Psyllid ID: psy2240

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MLSFGSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEcEEEEcccHHHHHHHHHHHHHHHHcccccEEEEEccccccccEEEEEEEEcHHHHHHHcccccccccccccEEEEcEEEEEcccccEEccccccccccccccEEEEcHHHHHHHHHHHHHcccEEEcccEEEEEEEEccccEEEEEcccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHccccccHHHEEEEEEEEcccccHHHHHHHHHHcHHHccccEEEEEEEcccHHHHHHHccccHcHHHHHHHcccHHHccccccccccccEEEEEcccccccccccccccccccccEEEEHHHHHHHHHHHHHHcccEEEccccHHHHHEcccccEEEEEEcccccccccccc
Coil and Loop (DISEMBL)
mlsfgssksdqfdvdmerfeDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVgghilsgavidpialnellpdwkdlgaplntpvhedkfayltkskrigipilpgmpmnnhgnYVVRLGHVVKWLGEQAEAmgveiypgipasevlyhgdgsvkgiatgdvgiakdgspk
Flexible Loop (DISEMBL)
mlsfgssksdqfdvDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGiatgdvgiakdgspk
Low Complexity Region (SEG)
MLSFGSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK
Disordered region (IsUnstruct)
****************ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG********
Disordered Region (DISOPRED)
******************FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKD****
Disordered Region (DISEMBL)
**********QFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK
Disordered Region (DISPRO)
*************VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGI*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSFGSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
Q921G7	616	Electron transfer flavopr	yes	N/A	0.928	0.274	0.721	6e-70
Q6UPE1	616	Electron transfer flavopr	yes	N/A	0.928	0.274	0.715	4e-69
Q2KIG0	617	Electron transfer flavopr	yes	N/A	0.928	0.273	0.704	1e-67
P55931	617	Electron transfer flavopr	yes	N/A	0.928	0.273	0.704	2e-67
Q16134	617	Electron transfer flavopr	yes	N/A	0.928	0.273	0.698	7e-67
Q5RDD3	617	Electron transfer flavopr	yes	N/A	0.928	0.273	0.698	7e-67
Q11190	597	Electron transfer flavopr	yes	N/A	0.934	0.284	0.676	2e-61
Q54XM6	606	Electron transfer flavopr	yes	N/A	0.950	0.285	0.603	3e-56
P94132	570	Probable electron transfe	yes	N/A	0.917	0.292	0.558	9e-47
Q9HZP5	551	Electron transfer flavopr	yes	N/A	0.906	0.299	0.549	2e-45

>sp|Q921G7|ETFD_MOUSE Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Mus musculus GN=Etfdh PE=1 SV=1

 Score =  263 bits (671), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 122/169 (72%), Positives = 145/169 (85%)

Query: 14  VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
           V+MERF + ADVVIVG GPAG++AAIRLKQLA + GK+++VCLVEKAA++G H LSGA +
Sbjct: 59  VNMERFAEEADVVIVGAGPAGLSAAIRLKQLAAEQGKDIRVCLVEKAAQIGAHTLSGACL 118

Query: 74  DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
           DP A  EL PDWK+ GAPLNTPV ED+FA LT+  RI +PILPG+PMNNHGNY+VRLGH+
Sbjct: 119 DPAAFKELFPDWKEKGAPLNTPVTEDRFAILTEKHRIPVPILPGLPMNNHGNYIVRLGHL 178

Query: 134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           V W+GEQAEA+GVE+YPG  A+EVLYH DGSVKGIAT DVGI KDG+PK
Sbjct: 179 VSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQKDGAPK 227

Accepts electrons from ETF and reduces ubiquinone.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 5EC: .EC: 5EC: .EC: 1

>sp|Q6UPE1|ETFD_RAT Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Rattus norvegicus GN=Etfdh PE=2 SV=1

 Score =  260 bits (664), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 121/169 (71%), Positives = 144/169 (85%)

Query: 14  VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
           V+MERF + ADVVIVG GPAG++AAIRLKQLA +  K+++VCLVEKAA++G H LSGA +
Sbjct: 59  VNMERFAEEADVVIVGAGPAGLSAAIRLKQLAAEQEKDIRVCLVEKAAQIGAHTLSGACL 118

Query: 74  DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
           DP A  EL PDWK+ GAPLNTPV ED+FA LT+  RI +PILPG+PMNNHGNY+VRLGH+
Sbjct: 119 DPAAFKELFPDWKEKGAPLNTPVTEDRFAILTEKHRIPVPILPGLPMNNHGNYIVRLGHL 178

Query: 134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           V W+GEQAEA+GVE+YPG  A+EVLYH DGSVKGIAT DVGI KDG+PK
Sbjct: 179 VSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQKDGAPK 227

Accepts electrons from ETF and reduces ubiquinone.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q2KIG0|ETFD_BOVIN Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Bos taurus GN=ETFDH PE=2 SV=1

 Score =  255 bits (651), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/169 (70%), Positives = 143/169 (84%)

Query: 14  VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
           V+MERF + ADVVIVG GPAG++AA RLKQLA +  K+++VCLVEKAA++G H LSGA +
Sbjct: 60  VNMERFAEEADVVIVGAGPAGLSAAARLKQLAAQHEKDIRVCLVEKAAQIGAHTLSGACL 119

Query: 74  DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
           DP AL EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGNY+VRLGH+
Sbjct: 120 DPRALQELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHL 179

Query: 134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI KDG+PK
Sbjct: 180 VSWMGEQAEALGVEVYPGYAAAEVLFHEDGSVKGIATNDVGIQKDGAPK 228

Accepts electrons from ETF and reduces ubiquinone.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Sus scrofa GN=ETFDH PE=1 SV=2

 Score =  254 bits (649), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/169 (70%), Positives = 141/169 (83%)

Query: 14  VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
           V+MERF + ADVVIVG GPAG++AA RLKQLA +  K+L+VCLVEKAA +G H LSGA +
Sbjct: 60  VNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACL 119

Query: 74  DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
           DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGNYVVRLGH+
Sbjct: 120 DPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHL 179

Query: 134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI KDG+PK
Sbjct: 180 VSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 228

Accepts electrons from ETF and reduces ubiquinone.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Homo sapiens GN=ETFDH PE=1 SV=2

 Score =  253 bits (645), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 118/169 (69%), Positives = 142/169 (84%)

Query: 14  VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
           V+MERF + ADVVIVG GPAG++AA+RLKQLA    K+++VCLVEKAA++G H LSGA +
Sbjct: 60  VNMERFAEEADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACL 119

Query: 74  DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
           DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGNY+VRLGH+
Sbjct: 120 DPGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHL 179

Query: 134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI KDG+PK
Sbjct: 180 VSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPK 228

Accepts electrons from ETF and reduces ubiquinone.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q5RDD3|ETFD_PONAB Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Pongo abelii GN=ETFDH PE=2 SV=1

 Score =  253 bits (645), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 118/169 (69%), Positives = 142/169 (84%)

Query: 14  VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
           V+MERF + ADVVIVG GPAG++AA+RLKQLA    K+++VCLVEKAA++G H LSGA +
Sbjct: 60  VNMERFAEGADVVIVGAGPAGLSAAVRLKQLAAAHEKDIRVCLVEKAAQIGAHTLSGACL 119

Query: 74  DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
           DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGNY+VRLGH+
Sbjct: 120 DPGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHL 179

Query: 134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI KDG+PK
Sbjct: 180 VSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPK 228

Accepts electrons from ETF and reduces ubiquinone.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q11190|ETFD_CAEEL Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Caenorhabditis elegans GN=let-721 PE=1 SV=2

 Score =  234 bits (597), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 142/170 (83%)

Query: 13  DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
           DVD+ R  DV DVVIVGGGP+G++AAIRL+QLAEK  KEL+VC+VEKA+ +GGH LSGAV
Sbjct: 41  DVDLARESDVYDVVIVGGGPSGLSAAIRLRQLAEKAQKELRVCVVEKASVIGGHTLSGAV 100

Query: 73  IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 132
           I+  AL+EL+P+WK+LGAP+   V  +  A LT+S RI +P+LPG+P+ NHGNY+VRLG 
Sbjct: 101 IETRALDELIPNWKELGAPVYQQVTSESIAILTESGRIPVPVLPGVPLANHGNYIVRLGK 160

Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           VV+WLGEQAEA GVE++P I ASEVLY+ DGSVKGIAT DVGI KDG+PK
Sbjct: 161 VVQWLGEQAEAAGVEVWPEIAASEVLYNEDGSVKGIATSDVGIGKDGAPK 210

Accepts electrons from ETF and reduces ubiquinone.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q54XM6|ETFD_DICDI Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Dictyostelium discoideum GN=etfdh PE=3 SV=1

 Score =  217 bits (553), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/179 (60%), Positives = 143/179 (79%), Gaps = 6/179 (3%)

Query: 2   LSFGSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
           + F SS+ +    D ++F    DVVIVG GP+G++ AIRLKQL+EK GK+L+VC+VEK +
Sbjct: 40  IRFFSSEQELPPRDSDQF----DVVIVGAGPSGLSTAIRLKQLSEKAGKDLRVCVVEKGS 95

Query: 62  EVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMN 121
           EVG HILSGAV+DP ALNEL+PDWK+ GAPL T V +DKF +LT+++ + +P  P + M+
Sbjct: 96  EVGSHILSGAVMDPKALNELIPDWKEKGAPLITEVKQDKFYFLTENRSLRLPT-PRL-MH 153

Query: 122 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGS 180
           N GNY++ LG+VV+WLGEQAE+MGVE+YP   ASEVLYH +G+V+GIAT D+GIAKDGS
Sbjct: 154 NEGNYIISLGNVVRWLGEQAESMGVEVYPSFAASEVLYHDNGAVRGIATNDMGIAKDGS 212

Accepts electrons from ETF and reduces ubiquinone.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|P94132|ETFD_ACIAD Probable electron transfer flavoprotein-ubiquinone oxidoreductase OS=Acinetobacter sp. (strain ADP1) GN=etfD PE=4 SV=1

 Score =  186 bits (471), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 96/172 (55%), Positives = 128/172 (74%), Gaps = 5/172 (2%)

Query: 14  VDMERFEDVADVVIVGGGPAGMAAAIRLKQLA-EKDGKELKVCLVEKAAEVGGHILSGAV 72
           + +ER     DVVIVG GPAG++AAI+++QLA E +  +L VC+VEK +EVG HILSGAV
Sbjct: 2   ITIEREAMEFDVVIVGAGPAGLSAAIKIRQLAIENNLPDLSVCVVEKGSEVGAHILSGAV 61

Query: 73  IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLT---KSKRIGIPILPGMPMNNHGNYVVR 129
           ++P A+NEL P+WK+ GAPLN PV EDK  +L    KS+     ++P   M+N GNYV+ 
Sbjct: 62  LEPRAINELFPNWKEEGAPLNVPVTEDKTYFLMSDEKSQEAPHWMVPKT-MHNDGNYVIS 120

Query: 130 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSP 181
           LG+VV+WLG++AE + V I+PG  A+E+LYH DG+VKGI TGD+GI KDG P
Sbjct: 121 LGNVVRWLGQKAEELEVSIFPGFAAAEILYHADGTVKGIQTGDMGIGKDGEP 172

Accepts electrons from ETF and reduces ubiquinone.

Acinetobacter sp. (strain ADP1) (taxid: 62977)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

>sp|Q9HZP5|ETFD_PSEAE Electron transfer flavoprotein-ubiquinone oxidoreductase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA2953 PE=1 SV=1

 Score =  181 bits (459), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/171 (54%), Positives = 120/171 (70%), Gaps = 6/171 (3%)

Query: 16  MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDP 75
           MER     DVVIVG GPAG++AA RLKQ A + G+E+ VC+VEK +EVG HILSGAV +P
Sbjct: 1   MEREYMEFDVVIVGAGPAGLSAACRLKQKAAEAGQEISVCVVEKGSEVGAHILSGAVFEP 60

Query: 76  IALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGM----PMNNHGNYVVRLG 131
            ALNEL PDWK+LGAPLNTPV  D   Y+ KS      + P       M+N GNY++ LG
Sbjct: 61  RALNELFPDWKELGAPLNTPVTGDDI-YVLKSAESATKV-PNFFVPKTMHNEGNYIISLG 118

Query: 132 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           ++ +WL +QAE +GVEIYPG  A E L   +G V+GI TGD+G+ ++G+PK
Sbjct: 119 NLCRWLAQQAEGLGVEIYPGFAAQEALIDENGVVRGIVTGDLGVDREGNPK 169

Accepts electrons from ETF and reduces ubiquinone.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 1

EC: .

EC: 5

EC: .

EC: 5

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
328720634	602	PREDICTED: electron transfer flavoprotei	0.934	0.282	0.794	4e-76
332372654	601	unknown [Dendroctonus ponderosae]	0.934	0.282	0.8	6e-74
91081319	601	PREDICTED: similar to AGAP005894-PA [Tri	0.934	0.282	0.764	4e-71
307186106	648	Electron transfer flavoprotein-ubiquinon	0.934	0.262	0.752	7e-71
332018285	606	Electron transfer flavoprotein-ubiquinon	0.934	0.280	0.752	1e-70
380026925	560	PREDICTED: electron transfer flavoprotei	0.934	0.303	0.758	1e-70
66540209	606	PREDICTED: electron transfer flavoprotei	0.934	0.280	0.758	2e-70
289743673	604	electron transfer flavoprotein ubiquinon	0.928	0.279	0.751	5e-70
322802783	548	hypothetical protein SINV_12757 [Solenop	0.934	0.310	0.741	6e-70
148233982	616	electron-transferring-flavoprotein dehyd	0.928	0.274	0.751	7e-70

>gi|328720634|ref|XP_003247087.1| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like isoform 1 [Acyrthosiphon pisum] gi|328720636|ref|XP_003247088.1| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like isoform 2 [Acyrthosiphon pisum]

 Score =  288 bits (738), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 135/170 (79%), Positives = 157/170 (92%)

Query: 13  DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
           D+ MER+EDVADVVIVGGGPAG++AAI+LK+LA ++ KEL+VC+VEKA+EVG HILSGAV
Sbjct: 45  DISMERYEDVADVVIVGGGPAGLSAAIKLKKLATENNKELRVCVVEKASEVGNHILSGAV 104

Query: 73  IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 132
           +DPIALNEL P+WKDLGAPL TPV +DKF YLTKS RI IPILPGMPM+NHGNY+VRLGH
Sbjct: 105 VDPIALNELFPNWKDLGAPLTTPVKDDKFGYLTKSSRIPIPILPGMPMDNHGNYIVRLGH 164

Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           +VKWLGEQAE++GVE+Y G PA+EVLYH DGSVKG+ATGDVGIAKDGSPK
Sbjct: 165 LVKWLGEQAESLGVEVYAGYPAAEVLYHDDGSVKGVATGDVGIAKDGSPK 214

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372654|gb|AEE61469.1| unknown [Dendroctonus ponderosae]

 Score =  281 bits (720), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 136/170 (80%), Positives = 153/170 (90%)

Query: 13  DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
           +V+MERF D  D++IVGGGPAGM+AAIR KQLAEKDGKE++VCLVEKA+EVGGHILSGAV
Sbjct: 46  EVNMERFADETDILIVGGGPAGMSAAIRAKQLAEKDGKEVRVCLVEKASEVGGHILSGAV 105

Query: 73  IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 132
           I P ALNEL+PDW++ GAPL TPV EDKFA+LT++ RI IP+LPG PM NHGNYVVRLGH
Sbjct: 106 IQPTALNELIPDWQEKGAPLKTPVKEDKFAFLTETGRIPIPVLPGTPMYNHGNYVVRLGH 165

Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           VV+WLGEQAEA+GVEIYPG  ASEVLYH DGSVKGIAT DVGIAKDGSPK
Sbjct: 166 VVQWLGEQAEALGVEIYPGYAASEVLYHEDGSVKGIATNDVGIAKDGSPK 215

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081319|ref|XP_969902.1| PREDICTED: similar to AGAP005894-PA [Tribolium castaneum] gi|270006103|gb|EFA02551.1| hypothetical protein TcasGA2_TC008256 [Tribolium castaneum]

 Score =  272 bits (696), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/170 (76%), Positives = 149/170 (87%)

Query: 13  DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
           +V+MERF D  D++I+GGGPAGM+AAIR KQLAEKDGKEL+VC+VEKA++VGGHILSGAV
Sbjct: 46  EVNMERFGDETDILIIGGGPAGMSAAIRAKQLAEKDGKELRVCVVEKASQVGGHILSGAV 105

Query: 73  IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 132
           I P AL+EL+PDW D GAPL TPV EDKF  LT + RI +P+LPG PM NHGNY+VRLGH
Sbjct: 106 IQPTALDELIPDWADKGAPLKTPVKEDKFGILTATGRIPVPVLPGTPMYNHGNYIVRLGH 165

Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           VV+WLGEQAEAMGVEIYPG  ASE+LYH DGSVKG+AT DVGIAKDGSPK
Sbjct: 166 VVQWLGEQAEAMGVEIYPGYAASEILYHPDGSVKGVATNDVGIAKDGSPK 215

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186106|gb|EFN71831.1| Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Camponotus floridanus]

 Score =  271 bits (694), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 128/170 (75%), Positives = 150/170 (88%)

Query: 13  DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
           DV+MER+ D  D++IVGGGPAG++AAI+ ++LAEK GKEL+V LVEKA+ +GGHILSGA 
Sbjct: 90  DVNMERYVDETDILIVGGGPAGLSAAIQARRLAEKHGKELRVTLVEKASTIGGHILSGAC 149

Query: 73  IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 132
           +DPIALNEL P+WK+LGAPLNTPV EDKFA+LT++KRI IPI  GMPM NHGNY+VRLGH
Sbjct: 150 LDPIALNELFPNWKELGAPLNTPVTEDKFAFLTENKRISIPIFKGMPMYNHGNYIVRLGH 209

Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           VV WLGEQAEA GVE+YPG  ASEVLY+ DGSVKG+AT DVGIAKDGSPK
Sbjct: 210 VVAWLGEQAEATGVEMYPGYAASEVLYYEDGSVKGVATNDVGIAKDGSPK 259

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018285|gb|EGI58890.1| Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Acromyrmex echinatior]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/170 (75%), Positives = 149/170 (87%)

Query: 13  DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
           +V+MER+ D  D++IVGGGPAG++AAI+ ++LAEK GKEL+V LVEKA+ +GGHILSGA 
Sbjct: 48  EVNMERYVDETDILIVGGGPAGLSAAIQARRLAEKHGKELRVTLVEKASAIGGHILSGAC 107

Query: 73  IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 132
           +DPIALNEL P+WK+LGAPLNTPV EDKFA+LT+ KRI IPI  GMPM NHGNY+VRLGH
Sbjct: 108 LDPIALNELFPNWKELGAPLNTPVTEDKFAFLTEMKRISIPIFKGMPMYNHGNYIVRLGH 167

Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           VV WLGEQAEA GVEIYPG  A+EVLYH DGSVKG+AT DVGIAKDGSPK
Sbjct: 168 VVTWLGEQAEAAGVEIYPGYAAAEVLYHEDGSVKGVATNDVGIAKDGSPK 217

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026925|ref|XP_003697189.1| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like, partial [Apis florea]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/170 (75%), Positives = 150/170 (88%)

Query: 13  DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
           DV+MER+ D  D++IVGGGPAG++AAI+ ++LAEK GK+LKV +VEKA+ +GGHILSGA 
Sbjct: 48  DVNMERYIDETDILIVGGGPAGLSAAIQARKLAEKYGKDLKVTVVEKASTIGGHILSGAC 107

Query: 73  IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 132
           +DPIALNEL P+WK+LGAPLNTPV EDKFA+LT+  R+ IPIL GMPM NHGNY+VRLGH
Sbjct: 108 LDPIALNELFPNWKELGAPLNTPVTEDKFAFLTEKNRLSIPILKGMPMYNHGNYIVRLGH 167

Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           VV WLGEQAEAMGVEIYPG  A+EVLYH DGSVKGIAT DVGIAKDGSPK
Sbjct: 168 VVTWLGEQAEAMGVEIYPGYAAAEVLYHEDGSVKGIATNDVGIAKDGSPK 217

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66540209|ref|XP_624722.1| PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial isoform 1 [Apis mellifera]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/170 (75%), Positives = 150/170 (88%)

Query: 13  DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
           DV+MER+ D  D++IVGGGPAG++AAI+ ++LAEK GK+LKV +VEKA+ +GGHILSGA 
Sbjct: 48  DVNMERYIDETDILIVGGGPAGLSAAIQARKLAEKYGKDLKVTVVEKASTIGGHILSGAC 107

Query: 73  IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 132
           +DPIALNEL P+WK+LGAPLNTPV EDKFA+LT+  R+ IPIL GMPM NHGNY+VRLGH
Sbjct: 108 LDPIALNELFPNWKELGAPLNTPVTEDKFAFLTEKNRLSIPILKGMPMYNHGNYIVRLGH 167

Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           VV WLGEQAEAMGVEIYPG  A+EVLYH DGSVKGIAT DVGIAKDGSPK
Sbjct: 168 VVTWLGEQAEAMGVEIYPGYAAAEVLYHEDGSVKGIATNDVGIAKDGSPK 217

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289743673|gb|ADD20584.1| electron transfer flavoprotein ubiquinone oxidoreductase [Glossina morsitans morsitans]

 Score =  268 bits (686), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 127/169 (75%), Positives = 149/169 (88%)

Query: 14  VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
           V+MERF D  DVVIVGGGPAGM+AAIR KQLA +  KE++VC+VEKAAEVGGHILSGAV+
Sbjct: 49  VNMERFIDEVDVVIVGGGPAGMSAAIRAKQLAAEQQKEIRVCVVEKAAEVGGHILSGAVV 108

Query: 74  DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
           DP+++NEL P+WK++GAPLNTPV +D F+YLT + RI IPI  G PM+NHGNYVVRLGH+
Sbjct: 109 DPVSINELFPNWKEMGAPLNTPVTKDTFSYLTDAGRISIPIFKGWPMDNHGNYVVRLGHL 168

Query: 134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           VKWLGEQAEA+GVEIYPG  A+EVL+H DGSVKG+AT DVGIAKDGSPK
Sbjct: 169 VKWLGEQAEALGVEIYPGCAAAEVLFHKDGSVKGVATNDVGIAKDGSPK 217

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802783|gb|EFZ22995.1| hypothetical protein SINV_12757 [Solenopsis invicta]

 Score =  268 bits (686), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 126/170 (74%), Positives = 148/170 (87%)

Query: 13  DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
           DV+MER+ D  D++I+GGGPAG++AAI+ ++LAEK GKEL+V LVEKA+ +GGHILSGA 
Sbjct: 43  DVNMERYVDQTDILIIGGGPAGLSAAIQARRLAEKHGKELRVTLVEKASAIGGHILSGAC 102

Query: 73  IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 132
           +DPIALNEL P+WK+LGAPLNTPV EDKFA+LT+ KRI IPI  GMPM NHGNY+VRLGH
Sbjct: 103 LDPIALNELFPNWKELGAPLNTPVTEDKFAFLTEKKRISIPIFKGMPMYNHGNYIVRLGH 162

Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           VV WLGEQAEA GVEIY G  A+E+LYH DGSVKG+AT DVGIAKDGSPK
Sbjct: 163 VVTWLGEQAEAAGVEIYAGYAAAEILYHEDGSVKGVATNDVGIAKDGSPK 212

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148233982|ref|NP_001087869.1| electron-transferring-flavoprotein dehydrogenase [Xenopus laevis] gi|51950165|gb|AAH82397.1| MGC81928 protein [Xenopus laevis]

 Score =  268 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 127/169 (75%), Positives = 144/169 (85%)

Query: 14  VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
           V+MERF + ADVVIVGGGPAG++AAIRLKQLA +  KEL+VCLVEK A++G HILSGA +
Sbjct: 59  VNMERFAEEADVVIVGGGPAGLSAAIRLKQLAAECDKELRVCLVEKGAQIGAHILSGACL 118

Query: 74  DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
           +P AL EL PDWK+ GAPLNTPV EDKF  LTK  RI +PILPG+PMNNHGNY+VRLGH 
Sbjct: 119 EPRALEELFPDWKERGAPLNTPVTEDKFGILTKKHRIPVPILPGLPMNNHGNYIVRLGHF 178

Query: 134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           V WLGEQAEA+GVEIYPG  A+EVL+H DGSVKGIAT DVGI KDGSPK
Sbjct: 179 VSWLGEQAEALGVEIYPGYAAAEVLFHEDGSVKGIATNDVGIHKDGSPK 227

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
ZFIN|ZDB-GENE-040912-168	617	etfdh "electron-transferring-f	0.928	0.273	0.733	1.3e-66
MGI|MGI:106100	616	Etfdh "electron transferring f	0.928	0.274	0.721	5.8e-66
FB|FBgn0033465	604	Etf-QO "Electron transfer flav	0.934	0.281	0.735	2e-65
RGD|735052	616	Etfdh "electron-transferring-f	0.928	0.274	0.715	4.1e-65
UNIPROTKB|F1NY29	477	ETFDH "Uncharacterized protein	0.928	0.354	0.715	1.8e-64
UNIPROTKB|Q2KIG0	617	ETFDH "Electron transfer flavo	0.928	0.273	0.704	9.7e-64
UNIPROTKB|E2QTI8	618	ETFDH "Uncharacterized protein	0.928	0.273	0.704	1.2e-63
UNIPROTKB|F6V7P2	617	ETFDH "Uncharacterized protein	0.928	0.273	0.704	1.2e-63
UNIPROTKB|F1RW89	616	ETFDH "Electron transfer flavo	0.928	0.274	0.704	1.6e-63
UNIPROTKB|J3KND9	570	ETFDH "Electron transfer flavo	0.928	0.296	0.698	2e-63

ZFIN|ZDB-GENE-040912-168 etfdh "electron-transferring-flavoprotein dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 124/169 (73%), Positives = 148/169 (87%)

Query:    14 VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
             V+MERF D ADVVI+GGGPAG++AAIRLKQLA +  KEL+VC+VEKA+++G H LSGA +
Sbjct:    60 VEMERFADEADVVIIGGGPAGLSAAIRLKQLANQHEKELRVCVVEKASQIGAHTLSGACL 119

Query:    74 DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
             +P ALNEL+PDWK+ GAPLNTPV EDKF+ LT+  RI +PILPG+PMNNHGNY+VRLGH 
Sbjct:   120 EPTALNELIPDWKERGAPLNTPVTEDKFSILTEKYRIPVPILPGLPMNNHGNYLVRLGHF 179

Query:   134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
             V+WLGEQAE +GVE+YPG  A+EVL+H DGSVKGIAT DVGIAKDGSPK
Sbjct:   180 VRWLGEQAEELGVELYPGYAAAEVLFHEDGSVKGIATNDVGIAKDGSPK 228

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0022904 "respiratory electron transport chain" evidence=IMP

MGI|MGI:106100 Etfdh "electron transferring flavoprotein, dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 122/169 (72%), Positives = 145/169 (85%)

Query:    14 VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
             V+MERF + ADVVIVG GPAG++AAIRLKQLA + GK+++VCLVEKAA++G H LSGA +
Sbjct:    59 VNMERFAEEADVVIVGAGPAGLSAAIRLKQLAAEQGKDIRVCLVEKAAQIGAHTLSGACL 118

Query:    74 DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
             DP A  EL PDWK+ GAPLNTPV ED+FA LT+  RI +PILPG+PMNNHGNY+VRLGH+
Sbjct:   119 DPAAFKELFPDWKEKGAPLNTPVTEDRFAILTEKHRIPVPILPGLPMNNHGNYIVRLGHL 178

Query:   134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
             V W+GEQAEA+GVE+YPG  A+EVLYH DGSVKGIAT DVGI KDG+PK
Sbjct:   179 VSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQKDGAPK 227

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0009055 "electron carrier activity" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=ISO

GO:0017133 "mitochondrial electron transfer flavoprotein complex" evidence=TAS

GO:0022900 "electron transport chain" evidence=ISO

GO:0031305 "integral to mitochondrial inner membrane" evidence=ISO

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048038 "quinone binding" evidence=ISO

GO:0048039 "ubiquinone binding" evidence=ISO

GO:0051536 "iron-sulfur cluster binding" evidence=ISO

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0033465 Etf-QO "Electron transfer flavoprotein-ubiquinone oxidoreductase" [Drosophila melanogaster (taxid:7227)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 125/170 (73%), Positives = 148/170 (87%)

Query:    13 DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
             +VDMER  +  D+VIVGGGPAGM+AAIR KQLA +  +E++VC+VEKAAEVGGHILSGAV
Sbjct:    48 EVDMERCVEEVDLVIVGGGPAGMSAAIRAKQLAAEKDQEIRVCVVEKAAEVGGHILSGAV 107

Query:    73 IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 132
             IDPI+LNEL+PDW++ GAPLNTPV +D F++LT S RI IP+  G PM+NHGNYVVRLGH
Sbjct:   108 IDPISLNELIPDWQEQGAPLNTPVTKDTFSFLTGSGRISIPVFKGWPMDNHGNYVVRLGH 167

Query:   133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
             +VKWLG+QAEA+GVEIYPG  ASEVL+H DGSVKGIAT DVGIAK G+PK
Sbjct:   168 LVKWLGDQAEALGVEIYPGCAASEVLFHEDGSVKGIATNDVGIAKSGAPK 217

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=ISS;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006119 "oxidative phosphorylation" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=IMP

RGD|735052 Etfdh "electron-transferring-flavoprotein dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 121/169 (71%), Positives = 144/169 (85%)

Query:    14 VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
             V+MERF + ADVVIVG GPAG++AAIRLKQLA +  K+++VCLVEKAA++G H LSGA +
Sbjct:    59 VNMERFAEEADVVIVGAGPAGLSAAIRLKQLAAEQEKDIRVCLVEKAAQIGAHTLSGACL 118

Query:    74 DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
             DP A  EL PDWK+ GAPLNTPV ED+FA LT+  RI +PILPG+PMNNHGNY+VRLGH+
Sbjct:   119 DPAAFKELFPDWKEKGAPLNTPVTEDRFAILTEKHRIPVPILPGLPMNNHGNYIVRLGHL 178

Query:   134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
             V W+GEQAEA+GVE+YPG  A+EVLYH DGSVKGIAT DVGI KDG+PK
Sbjct:   179 VSWMGEQAEALGVEVYPGYAAAEVLYHEDGSVKGIATNDVGIQKDGAPK 227

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0006979 "response to oxidative stress" evidence=IEA;ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0009055 "electron carrier activity" evidence=IEA;ISO;IDA

GO:0016491 "oxidoreductase activity" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA;ISO

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA;ISO

GO:0031966 "mitochondrial membrane" evidence=ISO;IDA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048038 "quinone binding" evidence=ISO

GO:0048039 "ubiquinone binding" evidence=IEA;ISO

GO:0051536 "iron-sulfur cluster binding" evidence=IDA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA;ISO

UNIPROTKB|F1NY29 ETFDH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 121/169 (71%), Positives = 145/169 (85%)

Query:    14 VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
             V+MERF + ADVVIVGGGPAG++AAIRLKQLA + GKE++VCLVEKA+++G H LSGA +
Sbjct:    62 VNMERFAEEADVVIVGGGPAGLSAAIRLKQLAAEQGKEIRVCLVEKASQIGAHTLSGACL 121

Query:    74 DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
             +P +L EL PDWK+ GAPL+TPV EDKF  LTK  RI +PILPG+PM NHGNY+VRLGH 
Sbjct:   122 EPRSLEELFPDWKERGAPLHTPVTEDKFGILTKKYRIPVPILPGLPMVNHGNYIVRLGHF 181

Query:   134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
             V+WLGEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI KDG+PK
Sbjct:   182 VRWLGEQAEALGVELYPGYAAAEVLFHEDGSVKGIATNDVGIQKDGAPK 230

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA

GO:0048039 "ubiquinone binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q2KIG0 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 119/169 (70%), Positives = 143/169 (84%)

Query:    14 VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
             V+MERF + ADVVIVG GPAG++AA RLKQLA +  K+++VCLVEKAA++G H LSGA +
Sbjct:    60 VNMERFAEEADVVIVGAGPAGLSAAARLKQLAAQHEKDIRVCLVEKAAQIGAHTLSGACL 119

Query:    74 DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
             DP AL EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGNY+VRLGH+
Sbjct:   120 DPRALQELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHL 179

Query:   134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
             V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI KDG+PK
Sbjct:   180 VSWMGEQAEALGVEVYPGYAAAEVLFHEDGSVKGIATNDVGIQKDGAPK 228

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0048039 "ubiquinone binding" evidence=IEA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2QTI8 ETFDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 119/169 (70%), Positives = 142/169 (84%)

Query:    14 VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
             V+MERF + ADVVIVG GPAG++AA+RLKQLA K  K+++VCLVEKAA++G H LSGA +
Sbjct:    60 VNMERFAEEADVVIVGAGPAGLSAAVRLKQLATKHEKDIRVCLVEKAAQIGAHTLSGACL 119

Query:    74 DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
             DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGNY+VRLGH+
Sbjct:   120 DPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHL 179

Query:   134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
             V W+GEQAEA+GVEIYPG  A+EVL+H D SVKGIAT DVGI KDG+PK
Sbjct:   180 VSWMGEQAEALGVEIYPGYAAAEVLFHEDSSVKGIATNDVGIQKDGAPK 228

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0048039 "ubiquinone binding" evidence=IEA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

UNIPROTKB|F6V7P2 ETFDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 119/169 (70%), Positives = 142/169 (84%)

Query:    14 VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
             V+MERF + ADVVIVG GPAG++AA+RLKQLA K  K+++VCLVEKAA++G H LSGA +
Sbjct:    60 VNMERFAEEADVVIVGAGPAGLSAAVRLKQLATKHEKDIRVCLVEKAAQIGAHTLSGACL 119

Query:    74 DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
             DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGNY+VRLGH+
Sbjct:   120 DPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHL 179

Query:   134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
             V W+GEQAEA+GVEIYPG  A+EVL+H D SVKGIAT DVGI KDG+PK
Sbjct:   180 VSWMGEQAEALGVEIYPGYAAAEVLFHEDSSVKGIATNDVGIQKDGAPK 228

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

UNIPROTKB|F1RW89 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 119/169 (70%), Positives = 142/169 (84%)

Query:    14 VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
             V+MERF + ADVVIVG GPAG++AA RLKQLA +  K+L+VCLVEKAA++G H LSGA +
Sbjct:    59 VNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAQIGAHTLSGACL 118

Query:    74 DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
             DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGNYVVRLGH+
Sbjct:   119 DPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHL 178

Query:   134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
             V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI KDG+PK
Sbjct:   179 VSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 227

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0048039 "ubiquinone binding" evidence=IEA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IEA

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

UNIPROTKB|J3KND9 ETFDH "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 118/169 (69%), Positives = 142/169 (84%)

Query:    14 VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
             V+MERF + ADVVIVG GPAG++AA+RLKQLA    K+++VCLVEKAA++G H LSGA +
Sbjct:    13 VNMERFAEEADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACL 72

Query:    74 DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
             DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGNY+VRLGH+
Sbjct:    73 DPGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHL 132

Query:   134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
             V W+GEQAEA+GVE+YPG  A+EVL+H DGSVKGIAT DVGI KDG+PK
Sbjct:   133 VSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPK 181

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P94132	ETFD_ACIAD	1, ., 5, ., 5, ., 1	0.5581	0.9175	0.2929	yes	N/A
Q16134	ETFD_HUMAN	1, ., 5, ., 5, ., 1	0.6982	0.9285	0.2739	yes	N/A
Q54XM6	ETFD_DICDI	1, ., 5, ., 5, ., 1	0.6033	0.9505	0.2854	yes	N/A
Q6UPE1	ETFD_RAT	1, ., 5, ., 5, ., 1	0.7159	0.9285	0.2743	yes	N/A
Q5RDD3	ETFD_PONAB	1, ., 5, ., 5, ., 1	0.6982	0.9285	0.2739	yes	N/A
P55931	ETFD_PIG	1, ., 5, ., 5, ., 1	0.7041	0.9285	0.2739	yes	N/A
Q11190	ETFD_CAEEL	1, ., 5, ., 5, ., 1	0.6764	0.9340	0.2847	yes	N/A
P87111	ETFD_SCHPO	1, ., 5, ., 5, ., 1	0.5058	0.9285	0.2674	yes	N/A
Q921G7	ETFD_MOUSE	1, ., 5, ., 5, ., 1	0.7218	0.9285	0.2743	yes	N/A
Q9HZP5	ETFD_PSEAE	1, ., 5, ., 5, ., 1	0.5497	0.9065	0.2994	yes	N/A
Q2KIG0	ETFD_BOVIN	1, ., 5, ., 5, ., 1	0.7041	0.9285	0.2739	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	182
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	2e-28
PRK10157	428	PRK10157, PRK10157, putative oxidoreductase FixC;	1e-10
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	5e-08
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	1e-07
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	4e-07
PRK10015	429	PRK10015, PRK10015, oxidoreductase; Provisional	5e-07
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	6e-07
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	7e-07
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	1e-06
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	3e-06
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	6e-06
PRK06854	608	PRK06854, PRK06854, adenylylsulfate reductase subu	7e-06
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	7e-06
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	9e-06
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-05
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	2e-05
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	2e-05
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	3e-05
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	3e-05
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	4e-05
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	4e-05
TIGR00275	400	TIGR00275, TIGR00275, flavoprotein, HI0933 family	5e-05
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	5e-05
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	6e-05
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	9e-05
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	1e-04
pfam13454	153	pfam13454, NAD_binding_9, FAD-NAD(P)-binding	1e-04
TIGR03997	645	TIGR03997, mycofact_OYE_2, mycofactocin system Fad	1e-04
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	1e-04
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	2e-04
TIGR01372	985	TIGR01372, soxA, sarcosine oxidase, alpha subunit	2e-04
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	2e-04
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	2e-04
PRK12844	557	PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrog	3e-04
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	3e-04
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	3e-04
pfam01946	229	pfam01946, Thi4, Thi4 family	3e-04
TIGR01790	388	TIGR01790, carotene-cycl, lycopene cyclase family	4e-04
PRK12843	578	PRK12843, PRK12843, putative FAD-binding dehydroge	4e-04
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	4e-04
TIGR01813	439	TIGR01813, flavo_cyto_c, flavocytochrome c	5e-04
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	5e-04
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	6e-04
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	6e-04
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	7e-04
PRK06069	577	PRK06069, sdhA, succinate dehydrogenase flavoprote	7e-04
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	8e-04
PRK08275	554	PRK08275, PRK08275, putative oxidoreductase; Provi	0.001
PLN02463	447	PLN02463, PLN02463, lycopene beta cyclase	0.001
PRK07843	557	PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrog	0.001
TIGR00562	462	TIGR00562, proto_IX_ox, protoporphyrinogen oxidase	0.001
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	0.002
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	0.002
TIGR00292	254	TIGR00292, TIGR00292, thiazole biosynthesis enzyme	0.002
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	0.002
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	0.002
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	0.003
PRK08294	634	PRK08294, PRK08294, phenol 2-monooxygenase; Provis	0.003
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	0.003
TIGR03996	633	TIGR03996, mycofact_OYE_1, mycofactocin system Fad	0.003
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	0.003
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	0.004

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score =  108 bits (272), Expect = 2e-28
 Identities = 56/167 (33%), Positives = 77/167 (46%), Gaps = 23/167 (13%)

Query: 20  EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79
               DVVIVG GPAG +AA RL +        L V ++EK +E G     G  + P AL 
Sbjct: 1   MMEYDVVIVGAGPAGSSAARRLAKAG------LDVLVLEKGSEPGAKPCCGGGLSPRALE 54

Query: 80  ELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGE 139
           EL+PD+ +    +   V   +  +  +   I +P+  G        Y+V      KWL E
Sbjct: 55  ELIPDFDEE---IERKVTGARIYFPGEKVAIEVPVGEG--------YIVDRAKFDKWLAE 103

Query: 140 QAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD------VGIAKDGS 180
           +AE  G E+YPG   + V+   DG V G+  GD      V I  DG 
Sbjct: 104 RAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV 150

Length = 396

>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 10/160 (6%)

Query: 20  EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79
           ED+ D +IVG G AG  AA+ L     ++G +  V ++E+    G   ++G  +   +L 
Sbjct: 3   EDIFDAIIVGAGLAGSVAALVLA----REGAQ--VLVIERGNSAGAKNVTGGRLYAHSLE 56

Query: 80  ELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMN-NHGNYVVRLGHVVKWLG 138
            ++P + D  AP+   +  +K A++T+   + +    G   + +  +Y V       WL 
Sbjct: 57  HIIPGFAD-SAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLM 115

Query: 139 EQAEAMGVEIYPGIPASEVLYHGDGSVKGI-ATGDVGIAK 177
           EQAE  G ++  GI    ++   DG V G+ A GDV  AK
Sbjct: 116 EQAEEAGAQLITGIRVDNLVQR-DGKVVGVEADGDVIEAK 154

Length = 428

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 36/157 (22%)

Query: 16  MERFEDVA--DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
            E+  D    DV IVG GP+G+ AA     LA+     LKV + E+    GG +  G ++
Sbjct: 17  FEKLLDYLEVDVAIVGAGPSGLTAA---YYLAKAG---LKVAVFERKLSFGGGMWGGGML 70

Query: 74  DPIAL--NELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLG 131
               +   E      + G      V +                         G YV    
Sbjct: 71  FNKIVVQEEADEILDEFGIRYK-EVED-------------------------GLYVADSV 104

Query: 132 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI 168
                L   A   G +I+ G+   +V+   D  V G+
Sbjct: 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGV 141

Length = 257

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
             DV I+G G +G+AAA  LKQ            + EK  +VGG
Sbjct: 7  THTDVAIIGAGQSGLAAAYALKQAGVP-----DFVIFEKRDDVGG 46

Length = 443

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 23/42 (54%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DVV++G GPAG  AAIR  QL       LKV LVEK   +GG
Sbjct: 6  DVVVIGAGPAGYVAAIRAAQLG------LKVALVEKGERLGG 41

Length = 454

>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional

 Score = 48.4 bits (115), Expect = 5e-07
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 9/154 (5%)

Query: 20  EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79
           +D  D ++VG G AG  AA+ + +        L V ++E+    G   ++G  +    L 
Sbjct: 3   DDKFDAIVVGAGVAGSVAALVMARAG------LDVLVIERGDSAGCKNMTGGRLYAHTLE 56

Query: 80  ELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMP-MNNHGNYVVRLGHVVKWLG 138
            ++P +    AP+   V  +K ++LT+   + +      P +  H +Y V    +  WL 
Sbjct: 57  AIIPGFAA-SAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLM 115

Query: 139 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 172
           EQAE  G +  PG+    ++  G+  V G+  GD
Sbjct: 116 EQAEQAGAQFIPGVRVDALVREGN-KVTGVQAGD 148

Length = 429

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 40/145 (27%), Positives = 53/145 (36%), Gaps = 16/145 (11%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
           DV IVG GPAG+A A+ L +        L V L+E+A         G  + P AL   L 
Sbjct: 4   DVAIVGAGPAGLALALALARAG------LDVTLLERAPRELLERGRGIALSPNAL-RALE 56

Query: 84  D---WKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHG-NYVVRLGHVVKWLGE 139
               W  L   L  P            + +   I     +      YVV    ++  L E
Sbjct: 57  RLGLWDRL-EALGVPPLHVMVVDDGGRRLL---IFDAAELGRGALGYVVPRSDLLNALLE 112

Query: 140 QAEAMG-VEIYPGIPASEVLYHGDG 163
            A A+  V +  G     V   GDG
Sbjct: 113 AARALPNVTLRFGAEVEAVEQDGDG 137

Length = 387

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 7/52 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI-LSGAVID 74
          DVV++G G AG+AAA+   +        LKV +VEK    GG    S   ID
Sbjct: 1  DVVVIGSGLAGLAAALEAAE------AGLKVAVVEKGQPFGGATAWSSGGID 46

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 7/58 (12%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL 81
          DVV+VGGGPAG+AAAI     A + G   KV LVE+   +GG + +  ++     N  
Sbjct: 1  DVVVVGGGPAGVAAAIA----AARLGA--KVLLVERRGWLGG-MATSGLVGTDDGNYD 51

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 6/43 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
          DVV++GGG AG+ AAI   +        LKV L+ KA    GH
Sbjct: 8  DVVVIGGGGAGLRAAIEAAE------AGLKVALLSKAPPKRGH 44

Length = 562

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 46/163 (28%), Positives = 64/163 (39%), Gaps = 24/163 (14%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
           DVV+VG GPAG +AA RL        K L+V L+EK +    +   G  + P AL EL  
Sbjct: 2   DVVVVGAGPAGASAAYRLAD------KGLRVLLLEKKSF-PRYKPCGGALSPRALEELDL 54

Query: 84  DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA 143
             +     +N       F+    S  I I             YV+      + L E+A+ 
Sbjct: 55  PGE---LIVNLVRGARFFSPNGDSVEIPIETELA--------YVIDRDAFDEQLAERAQE 103

Query: 144 MGVEIYPGIPASEVLYHGDGSVKGIAT------GDVGIAKDGS 180
            G E+  G    +V  H D  V  +          + I  DGS
Sbjct: 104 AGAELRLGTRVLDVEIHDDRVVVIVRGSEGTVTAKIVIGADGS 146

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha; Validated

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 13/61 (21%)

Query: 16 MERFEDV---ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGA 71
          M   E V    D++I+GGG AG  AA   K+ A     +LKV +VEKA     +I  SGA
Sbjct: 2  MANPEVVEVDTDILIIGGGMAGCGAAFEAKEWA----PDLKVLIVEKA-----NIKRSGA 52

Query: 72 V 72
          V
Sbjct: 53 V 53

Length = 608

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 44.8 bits (107), Expect = 7e-06
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 7/47 (14%)

Query: 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          F    DV+++G GP G  AAIR  QL       LKV +VEK  ++GG
Sbjct: 1  FAFEYDVIVIGAGPGGYVAAIRAAQLG------LKVAIVEK-EKLGG 40

Length = 462

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
            + DV+I+GGGPAG+ AAI   +        LKV L+ +  E GG
Sbjct: 1  MKIYDVIIIGGGPAGLTAAIYAAR------AGLKVVLILEGGEPGG 40

Length = 305

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 6/43 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
          DVVI+GGGPAG+AAAIRL +        LKV L+E+      +
Sbjct: 1  DVVIIGGGPAGLAAAIRLAR------LGLKVALIEREGGTCYN 37

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGA 71
          +DV+IVG GP+G+ AA     LA+     LKV + E+    GG I  G 
Sbjct: 31 SDVIIVGAGPSGLTAA---YYLAKAG---LKVAIFERKLSFGGGIWGGG 73

Length = 262

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          D+V++G GPAG  AA+   Q A K GK  +V ++E+   VGG
Sbjct: 7  DLVVIGSGPAGEGAAM---QAA-KLGK--RVAVIERYRNVGG 42

Length = 461

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 7/48 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG 70
          DV+++GGG AG+ AAI   +      +  +V L++K  ++G  IL SG
Sbjct: 2  DVIVIGGGAAGLMAAISAAK------RGRRVLLIDKGKKLGRKILISG 43

Length = 405

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DVV++G G  G+AAA  L +        LKV ++EK   VGG
Sbjct: 5  DVVVIGAGLNGLAAAALLAR------AGLKVTVLEKNDRVGG 40

Length = 487

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)

Query: 27 IVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
          IVG G +G+ AA  L     K GK   V ++EK   +GG+  S
Sbjct: 1  IVGAGLSGLVAAYLLA----KRGK--DVLVLEKRDRIGGNAYS 37

Length = 66

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 5/38 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
          D+VIVGGGP G+A A+ L +        LKV L+E   
Sbjct: 1  DIVIVGGGPVGLALALALARSG-----GLKVALIEATP 33

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 7/46 (15%)

Query: 26 VIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG 70
          +I+GGG AG+ AAI     A +    L V L+EK  ++G  +L SG
Sbjct: 1  IIIGGGAAGLMAAI---TAAREG---LSVLLLEKNKKIGKKLLISG 40

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae [Unknown function, Enzymes of unknown specificity]. Length = 400

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 26 VIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68
          ++VG G AGMA A  L  L +       V +V++ A+ GGH  
Sbjct: 1  LVVGAGAAGMAFADHLLDLGDAP-----VIIVDRGAQPGGHWR 38

Length = 202

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 11/56 (19%)

Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG 70
          MERF    DV+I+GGGPAG+ AAI   +     G+  +V L++K  ++G  IL SG
Sbjct: 1  MERF----DVIIIGGGPAGLMAAISAAKA----GR--RVLLIDKGPKLGRKILMSG 46

Length = 408

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 22/42 (52%), Positives = 26/42 (61%), Gaps = 7/42 (16%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DV+++GGGP G  AAIR  QL       LKV LVEK   +GG
Sbjct: 3  DVIVIGGGPGGYVAAIRAAQLG------LKVALVEK-EYLGG 37

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 4/41 (9%)

Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          + I+GGG AG++AA RL+    K G +++V L E    VGG
Sbjct: 3  IAIIGGGIAGLSAAYRLQ----KAGPDVEVTLFEADDRVGG 39

Length = 444

>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 26 VIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
           I+G GP G++   RL  L     + L + + + +    G +
Sbjct: 1  AIIGAGPRGLSVLERL--LRRAPDRPLDITVFDPSPPGAGGV 40

Length = 153

>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family oxidoreductase 2

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 25  VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
           V++VGGGPAG+ AA    +         +V L E+   +GG +   A +
Sbjct: 382 VLVVGGGPAGLEAAATAARRGH------RVTLFEREDRLGGQVRLAARL 424

The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown. Length = 645

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
          D+VIVG G AG+  A+RL+Q        L+V L++
Sbjct: 1  DLVIVGAGLAGLLLALRLRQ----ARPGLRVLLID 31

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 53/186 (28%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG--------GHILSGAVIDP 75
           DVV++GGG  G++ A    +LA +    L V L+E+  ++         G +  G   + 
Sbjct: 1   DVVVIGGGIVGLSTAY---ELARRG---LSVTLLER-GDLASGASGRNAGLLHPGLRKER 53

Query: 76  --------IALNELLPDW-KDLGAP--------LNTPVHEDKFAYLTK----SKRIGIP- 113
                   +   +L  +  ++LG          L     E +   L +     + +G+P 
Sbjct: 54  APLLARLALESRDLWRELIEELGIDCDFRRTGVLVLARDEAELDALRRLAAALRALGLPV 113

Query: 114 ----------ILPGMPMNNHGNYVVRLGHVV------KWLGEQAEAMGVEIYPGIPASEV 157
                     + PG+     G      G  V      + L   AEA+GVEI  G   + +
Sbjct: 114 ELLDAEELRELEPGLSPGIRGGLFYPDGGHVDPARLLRALARAAEALGVEILEGTEVTGL 173

Query: 158 LYHGDG 163
              G G
Sbjct: 174 EREGGG 179

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 7/52 (13%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-GAVID 74
           DV++VG GPAG+AAA      A + G   +V LV++  E GG +LS    ID
Sbjct: 165 DVLVVGAGPAGLAAA----LAAARAG--ARVILVDEQPEAGGSLLSEAETID 210

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]. Length = 985

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 6/36 (16%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
          DV+++G GPAG  AA R  +L        KV L+EK
Sbjct: 5  DVIVIGAGPAGYVAARRAAKL------GKKVALIEK 34

Length = 460

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 6/41 (14%)

Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          + IVGGG AG+AAA RL     K G E  V + E   ++GG
Sbjct: 2  IAIVGGGIAGLAAAYRL----AKRGHE--VTVFEADDQLGG 36

Length = 434

>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 14/83 (16%)

Query: 23  ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI-LSGAVIDPIALNEL 81
            DVV+VG G  GM AA+     A   G E  +  VEK  +VGG   +SG V+  +  N L
Sbjct: 7   YDVVVVGSGGGGMCAAL----AAADSGLEPLI--VEKQDKVGGSTAMSGGVL-WLPNNPL 59

Query: 82  LPDWKDLGAPLNTPVHEDKFAYL 104
           +   K  G P     HED  AYL
Sbjct: 60  M---KAAGVP---DSHEDALAYL 76

Length = 557

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          E    VV++G GPAG +AA R   L       L+   VE+ + +GG
Sbjct: 2  EIKTQVVVLGAGPAGYSAAFRAADLG------LETVCVERYSTLGG 41

Length = 471

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 7/53 (13%)

Query: 17  ERFEDVAD-VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68
           E   +V+  V+++GGG AG+ AA+ L  +        KV LVEK   +GG + 
Sbjct: 118 EIKVEVSKSVLVIGGGVAGITAALELADMG------FKVYLVEKEPSIGGRMA 164

Length = 622

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 6/49 (12%)

Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG 70
           +DVVIVG GP+G+ AA     LA+K    LKV ++E++   GG    G
Sbjct: 17 ESDVVIVGAGPSGLTAA---YYLAKKG---LKVAIIERSLSPGGGAWGG 59

This family includes a putative thiamine biosynthetic enzyme. Length = 229

>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          D+ ++GGGPAG+A A+ L +        L+V L+E    + G
Sbjct: 1  DLAVIGGGPAGLAIALELARP------GLRVQLIEPHPPIPG 36

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. Length = 388

>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 6/49 (12%)

Query: 17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          ER++   DV+++G G AGM+AA+     A   G  LKV LVE+   VGG
Sbjct: 11 ERWDAEFDVIVIGAGAAGMSAAL----FAAIAG--LKVLLVERTEYVGG 53

Length = 578

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 6/39 (15%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62
          D+V+VG GPAG++ A  L       G  LKV L+E+   
Sbjct: 5  DIVVVGAGPAGLSFARSLA------GSGLKVTLIERQPL 37

Length = 392

>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 10/70 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH-ILSG----AVIDPIAL 78
          DVV+VG G AG++AA+  K+    +     V L+EK   +GG+  ++     A       
Sbjct: 1  DVVVVGSGFAGLSAALSAKKAGAAN-----VVLLEKMPVIGGNSAIAAGGMNAAGTDQQK 55

Query: 79 NELLPDWKDL 88
             + D  +L
Sbjct: 56 ALGIEDSPEL 65

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton [Energy metabolism, Electron transport]. Length = 439

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 7/42 (16%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          D+VI+GGGP G  AAIR  QL       LK  LVEK   +GG
Sbjct: 6  DLVIIGGGPGGYVAAIRAGQLG------LKTALVEKGK-LGG 40

Length = 472

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
          DVVI+GGG  G A A  L +       +L V L+EK   V   
Sbjct: 5  DVVIIGGGIMGAATAYELSEY----EPDLSVALLEKEDGVAQE 43

Length = 429

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 6/46 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
          DVVI+GGGP G  AAIR  QL       LKV  VE  + +GG  L+
Sbjct: 5  DVVIIGGGPGGYNAAIRAGQLG------LKVACVEGRSTLGGTCLN 44

Length = 466

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 43/157 (27%), Positives = 59/157 (37%), Gaps = 36/157 (22%)

Query: 22  VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV----GGHILSGAVIDPIA 77
           V  V+IVGGG  G++AAI L++        + V LVE   E      G  L G  +   A
Sbjct: 4   VKKVLIVGGGIGGLSAAIALRRAG------IAVDLVEIDPEWRVYGAGITLQGNALR--A 55

Query: 78  LNEL-----------LPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNY 126
           L EL             D  DL  P  T + E        + R+    LPG      G  
Sbjct: 56  LRELGVLDECLEAGFGFDGVDLFDPDGTLLAE------LPTPRLAGDDLPG----GGGIM 105

Query: 127 VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG 163
              L  +   L + A A G ++  G   + +    DG
Sbjct: 106 RPALARI---LADAARAAGADVRLGTTVTAIEQDDDG 139

Length = 375

>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 8/57 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-----GAVIDP 75
          DVVIVG G AG+ AA+     AE+ G +L V +V K   +  H +S      AV+ P
Sbjct: 7  DVVIVGSGLAGLRAAV---AAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYP 60

Length = 577

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
           VVI+G GPAG+ AA  L +      +   V ++E    VGG
Sbjct: 6  SVVIIGAGPAGLTAAYELLK------RGYPVTVLEADPVVGG 41

Length = 479

>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 4/37 (10%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
          D++++GGG AG  AAI+ K   E++   L+V L+EKA
Sbjct: 11 DILVIGGGTAGPMAAIKAK---ERN-PALRVLLLEKA 43

Length = 554

>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 10/56 (17%)

Query: 7  SKSDQFDVDMERFE----DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
          +K +  D ++ RF+     V D+V+VGGGPAG+A A    Q   + G  L VC ++
Sbjct: 9  TKKENLDFELPRFDPSKSRVVDLVVVGGGPAGLAVA----QQVSEAG--LSVCCID 58

Length = 447

>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DVV+VG G AGM AA+     A   G  L   +VEKA   GG
Sbjct: 9  DVVVVGSGAAGMVAALT----AAHRG--LSTVVVEKAPHYGG 44

Length = 557

>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 14/105 (13%)

Query: 21  DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI----LSGAVIDP- 75
               VVI+GGG +G+ AA  L++   +   EL   LVE +  VGG I      G +I+  
Sbjct: 1   GKKHVVIIGGGISGLCAAYYLEKEIPELPVEL--TLVEASDRVGGKIQTVKEDGYLIERG 58

Query: 76  ----IALNELLPDW-KDLG--APLNTPVHEDKFAYLTKSKRIGIP 113
               +   +  PD  KDLG    L +     ++  + + K + +P
Sbjct: 59  PDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVP 103

This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 462

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 37.8 bits (89), Expect = 0.002
 Identities = 14/19 (73%), Positives = 16/19 (84%)

Query: 21  DVADVVIVGGGPAGMAAAI 39
           D  DV++VGGGPAG AAAI
Sbjct: 210 DPYDVLVVGGGPAGAAAAI 228

Length = 517

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 12/18 (66%), Positives = 16/18 (88%)

Query: 24 DVVIVGGGPAGMAAAIRL 41
          D+ ++GGGPAG+AAAI L
Sbjct: 9  DIAVIGGGPAGLAAAIAL 26

Length = 388

>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 6/49 (12%)

Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG 70
           +DV+IVG GP+G+ AA     LA+     LKVC++E++   GG    G
Sbjct: 21 ESDVIIVGAGPSGLTAA---YYLAK---NGLKVCVLERSLAFGGGSWGG 63

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DVV++G GP G  AAIR  QL       LKV  +E      G
Sbjct: 6  DVVVIGAGPGGYVAAIRAAQLG------LKVACIEAWKNPKG 41

Length = 475

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 13  DVDMERFEDVA--DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG 70
                  E +   DV++VGGGPAG AAAI   +      K L+  +V  A  +GG +   
Sbjct: 201 VEAASALEQLDPYDVLVVGGGPAGAAAAIYAAR------KGLRTAMV--AERIGGQVKDT 252

Query: 71  AVID 74
             I+
Sbjct: 253 VGIE 256

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 6/41 (14%)

Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
           V++G G  G+A AIRL          + V +VE+  + GG
Sbjct: 1  AVVIGAGFGGLALAIRLA------AAGIPVTVVEQRDKPGG 35

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
          D  DV+IVG GPAG+  A +L         ++   +VE+
Sbjct: 31 DEVDVLIVGCGPAGLTLAAQLSAFP-----DITTRIVER 64

Length = 634

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 25 VVIVGGGPAGMAAAIRLKQ 43
          VV+VG GP G+A AI L Q
Sbjct: 26 VVVVGAGPVGLALAIDLAQ 44

Length = 547

>gnl|CDD|188511 TIGR03996, mycofact_OYE_1, mycofactocin system FadH/OYE family oxidoreductase 1

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
           DV++VGGGPAG+ AA R+           +V L E++A +GG +   A    +     L 
Sbjct: 374 DVLVVGGGPAGLEAA-RVLAARGH-----RVTLAERSAHLGGMLRIAARGPGLHRLAALA 427

Query: 84  DW 85
           DW
Sbjct: 428 DW 429

The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp. The function of this oxidoreductase is unknown. Length = 633

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63
          DV+I+G GP G+A AI  ++        L   ++EK   V
Sbjct: 1  DVIIIGAGPCGLACAIEAQK------AGLSYLIIEKGNLV 34

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 15/81 (18%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL----- 78
          DV+IVGGG  G++ A+ L +L      ++K+ L+E  A        G     +AL     
Sbjct: 1  DVIIVGGGLVGLSLALALSRLG-----KIKIALIE--ANSPSAAQPGFDARSLALSYGSK 53

Query: 79 NEL--LPDWKDLGAPLNTPVH 97
            L  L  W  L AP  TP+ 
Sbjct: 54 QILEKLGLWPKL-APFATPIL 73

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
KOG2415|consensus	621		99.95
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.86
PRK10157	428	putative oxidoreductase FixC; Provisional	99.83
PRK10015	429	oxidoreductase; Provisional	99.82
COG2081	408	Predicted flavoproteins [General function predicti	99.78
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.78
PRK08013	400	oxidoreductase; Provisional	99.76
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.75
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.75
PRK06184	502	hypothetical protein; Provisional	99.75
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.75
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.74
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.74
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.73
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.73
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.73
PRK06834	488	hypothetical protein; Provisional	99.73
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.72
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.72
PRK08244	493	hypothetical protein; Provisional	99.71
PRK06996	398	hypothetical protein; Provisional	99.71
PRK09126	392	hypothetical protein; Provisional	99.7
PRK07190	487	hypothetical protein; Provisional	99.7
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.7
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.7
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.7
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.69
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.69
PRK06185	407	hypothetical protein; Provisional	99.69
PRK07045	388	putative monooxygenase; Reviewed	99.69
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.68
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.68
PRK06126	545	hypothetical protein; Provisional	99.68
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.68
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.68
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.68
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.68
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.68
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.67
PRK07588	391	hypothetical protein; Provisional	99.67
PRK06847	375	hypothetical protein; Provisional	99.67
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.67
PRK11445	351	putative oxidoreductase; Provisional	99.66
PRK07538	413	hypothetical protein; Provisional	99.66
PRK08163	396	salicylate hydroxylase; Provisional	99.66
COG0579	429	Predicted dehydrogenase [General function predicti	99.66
PRK06475	400	salicylate hydroxylase; Provisional	99.66
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.65
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.65
PLN02985	514	squalene monooxygenase	99.64
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.64
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.63
PRK05868	372	hypothetical protein; Validated	99.63
PRK08294	634	phenol 2-monooxygenase; Provisional	99.63
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.62
PRK06753	373	hypothetical protein; Provisional	99.62
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.62
PRK07121	492	hypothetical protein; Validated	99.61
PRK07236	386	hypothetical protein; Provisional	99.61
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.6
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.6
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.6
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.6
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.6
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.6
PRK07804	541	L-aspartate oxidase; Provisional	99.6
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.59
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.59
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.59
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.59
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.59
PRK08274	466	tricarballylate dehydrogenase; Validated	99.59
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.58
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.58
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.58
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.58
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.57
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.57
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.56
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.55
PRK12839	572	hypothetical protein; Provisional	99.55
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.55
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.55
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.54
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.54
PRK08275	554	putative oxidoreductase; Provisional	99.54
PLN02463	447	lycopene beta cyclase	99.54
PRK06175	433	L-aspartate oxidase; Provisional	99.54
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.53
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.53
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.53
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.53
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.53
PRK07395	553	L-aspartate oxidase; Provisional	99.53
PLN02697	529	lycopene epsilon cyclase	99.52
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.52
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.52
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.52
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.52
PLN02815	594	L-aspartate oxidase	99.51
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.51
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.51
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.51
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.51
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.5
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.5
KOG2820|consensus	399		99.5
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.49
PRK05257	494	malate:quinone oxidoreductase; Validated	99.49
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.49
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.49
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.49
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.49
PLN02661	357	Putative thiazole synthesis	99.48
KOG1399|consensus	448		99.48
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.47
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.47
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.47
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.47
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.47
PTZ00367	567	squalene epoxidase; Provisional	99.47
KOG1298|consensus	509		99.47
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.47
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.46
PRK08401	466	L-aspartate oxidase; Provisional	99.45
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.45
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.45
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.44
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.44
PRK08071	510	L-aspartate oxidase; Provisional	99.44
KOG2614|consensus	420		99.44
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.44
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.43
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.43
PRK09077	536	L-aspartate oxidase; Provisional	99.42
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.42
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.41
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.41
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.41
PRK07512	513	L-aspartate oxidase; Provisional	99.39
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.39
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.37
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.37
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.37
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.37
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.36
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.36
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	99.35
PRK06116	450	glutathione reductase; Validated	99.35
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.34
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.34
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.33
PRK06370	463	mercuric reductase; Validated	99.32
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.32
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.32
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.32
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.31
PTZ00058	561	glutathione reductase; Provisional	99.31
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.3
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.29
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.29
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.28
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.28
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.26
KOG2844|consensus	856		99.25
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.25
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.24
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.24
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.23
PLN02507	499	glutathione reductase	99.23
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.22
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.21
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	99.21
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.2
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.2
PRK14694	468	putative mercuric reductase; Provisional	99.19
PLN02546	558	glutathione reductase	99.18
PTZ00052	499	thioredoxin reductase; Provisional	99.16
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.16
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.16
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.14
TIGR02053	463	MerA mercuric reductase. This model represents the	99.14
PRK14727	479	putative mercuric reductase; Provisional	99.14
KOG0042|consensus	680		99.13
KOG2404|consensus	477		99.12
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.11
PRK13748	561	putative mercuric reductase; Provisional	99.1
PRK09897	534	hypothetical protein; Provisional	99.09
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.09
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.09
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	99.08
KOG0029|consensus	501		99.08
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.08
PRK10262	321	thioredoxin reductase; Provisional	99.07
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	99.06
PRK07208	479	hypothetical protein; Provisional	99.03
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.03
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.02
KOG2852|consensus	380		99.01
KOG1335|consensus	506		99.0
KOG2853|consensus	509		98.99
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.99
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.98
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.97
COG3573	552	Predicted oxidoreductase [General function predict	98.97
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.95
PRK12831	464	putative oxidoreductase; Provisional	98.94
PLN02268	435	probable polyamine oxidase	98.93
PLN02576	496	protoporphyrinogen oxidase	98.93
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.93
KOG3855|consensus	481		98.92
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.92
PRK07233	434	hypothetical protein; Provisional	98.92
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.92
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.92
KOG0405|consensus	478		98.89
KOG2665|consensus	453		98.89
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.87
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.86
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.83
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.83
KOG2960|consensus	328		98.82
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.8
COG3349	485	Uncharacterized conserved protein [Function unknow	98.8
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.8
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.79
PLN02568	539	polyamine oxidase	98.79
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.76
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.74
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.71
KOG4716|consensus	503		98.71
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.7
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.69
PLN02676	487	polyamine oxidase	98.68
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.68
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.67
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.67
PLN02852	491	ferredoxin-NADP+ reductase	98.66
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.65
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	98.65
KOG1238|consensus	623		98.64
PLN02529	738	lysine-specific histone demethylase 1	98.63
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.63
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.63
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.62
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.6
KOG2311|consensus	679		98.6
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.58
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.58
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.58
PLN02612	567	phytoene desaturase	98.57
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.57
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.56
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.53
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.52
PLN02487	569	zeta-carotene desaturase	98.52
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.52
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.52
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.51
PRK02106	560	choline dehydrogenase; Validated	98.51
PRK07846	451	mycothione reductase; Reviewed	98.5
PTZ00188	506	adrenodoxin reductase; Provisional	98.5
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.49
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	98.49
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.48
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.48
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.47
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.46
KOG1276|consensus	491		98.45
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.45
KOG0685|consensus	498		98.44
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.43
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.42
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	98.4
KOG3923|consensus	342		98.39
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.39
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.39
PLN03000	881	amine oxidase	98.37
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.35
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.35
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.34
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.33
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.33
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.32
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.32
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.31
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.31
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.3
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.29
PLN02976	1713	amine oxidase	98.27
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.26
PRK06370	463	mercuric reductase; Validated	98.25
TIGR02053	463	MerA mercuric reductase. This model represents the	98.24
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.24
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.24
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.24
PLN02785	587	Protein HOTHEAD	98.23
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.21
PRK13984	604	putative oxidoreductase; Provisional	98.2
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.2
PRK06116	450	glutathione reductase; Validated	98.19
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.19
KOG4254|consensus	561		98.19
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.18
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.18
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.17
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.17
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.17
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.14
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.12
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.12
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.08
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.07
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.07
PLN02507	499	glutathione reductase	98.06
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.06
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.05
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.04
PRK14694	468	putative mercuric reductase; Provisional	98.04
KOG1800|consensus	468		98.04
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.03
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.03
PRK14727	479	putative mercuric reductase; Provisional	98.03
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	98.03
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.01
KOG0399|consensus	2142		98.0
PRK13748	561	putative mercuric reductase; Provisional	98.0
KOG0404|consensus	322		98.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.99
PLN02546	558	glutathione reductase	97.99
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.98
PTZ00058	561	glutathione reductase; Provisional	97.98
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.95
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.89
PRK07846	451	mycothione reductase; Reviewed	97.86
PTZ00052	499	thioredoxin reductase; Provisional	97.86
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.84
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.81
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.79
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	97.78
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.74
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.69
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.63
COG4716	587	Myosin-crossreactive antigen [Function unknown]	97.59
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.56
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.56
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.55
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	97.48
KOG1335|consensus	506		97.46
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.44
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.43
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.41
KOG1336|consensus	478		97.36
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.32
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.3
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.28
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.21
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.2
KOG2755|consensus	334		97.19
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.17
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.16
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.13
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.1
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.06
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.03
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.97
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.97
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.89
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.88
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.88
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.84
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.82
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.8
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.76
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.75
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.74
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.74
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.73
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.72
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.71
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.67
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	96.67
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.65
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.65
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.64
PRK10262	321	thioredoxin reductase; Provisional	96.62
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.61
KOG1439|consensus	440		96.61
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.61
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.6
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.6
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.57
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.55
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	96.55
KOG4405|consensus	547		96.54
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.52
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.51
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.5
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.5
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.5
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.5
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.48
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	96.47
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.47
PRK12831	464	putative oxidoreductase; Provisional	96.46
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.44
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	96.43
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.42
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	96.42
PRK04148	134	hypothetical protein; Provisional	96.4
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.4
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.4
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.38
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.38
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.37
PRK11730	715	fadB multifunctional fatty acid oxidation complex	96.3
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.27
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.24
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.24
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.23
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	96.23
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.21
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.18
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.18
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	96.17
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.16
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	96.12
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.12
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.1
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.09
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.08
PRK07417	279	arogenate dehydrogenase; Reviewed	96.08
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.07
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.07
PRK06223	307	malate dehydrogenase; Reviewed	96.07
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.06
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	96.04
PRK08328	231	hypothetical protein; Provisional	96.02
KOG3851|consensus	446		96.02
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.96
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	95.92
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.9
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.89
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.89
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.88
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	95.85
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.84
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	95.81
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.79
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.77
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.74
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.74
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	95.72
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	95.69
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.68
KOG1346|consensus	659		95.64
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.64
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.63
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.61
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.6
PRK08223	287	hypothetical protein; Validated	95.58
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	95.56
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.55
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.55
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.52
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.52
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.51
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.5
KOG2495|consensus	491		95.47
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.47
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	95.47
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	95.46
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.45
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.45
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	95.44
PTZ00117	319	malate dehydrogenase; Provisional	95.43
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.37
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.35
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	95.34
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.33
KOG0024|consensus	354		95.33
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	95.33
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	95.33
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	95.31
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.31
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.31
PLN02494	477	adenosylhomocysteinase	95.3
PRK09496	453	trkA potassium transporter peripheral membrane com	95.29
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.27
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.26
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.26
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.22
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.2
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.18
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.17
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	95.14
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	95.14
PRK10669	558	putative cation:proton antiport protein; Provision	95.12
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.12

>KOG2415|consensus

Probab=99.95  E-value=1.2e-27  Score=170.29  Aligned_cols=161  Identities=71%  Similarity=1.175  Sum_probs=150.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      ..++||+||||||+||++|+.|.|.++++...++|+|+||....||.+.++..+++..+.+++++|++.+.+++++++.+
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d  153 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSD  153 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccccccc
Confidence            34689999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEeCCEEEecCC
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG  179 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~~~~vi~adG  179 (182)
                      .+.++.....++++..  .+...++.|.++-.++.++|-+.+++.|++|+-+..+.++..++++.+.||.++|+=|.-||
T Consensus       154 ~~~fLt~~~~i~vPv~--~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G  231 (621)
T KOG2415|consen  154 KFKFLTGKGRISVPVP--SPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDG  231 (621)
T ss_pred             ceeeeccCceeecCCC--cccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCC
Confidence            9988888777777665  56777889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy2240         180 SPK  182 (182)
Q Consensus       180 ~~~  182 (182)
                      +||
T Consensus       232 ~pK  234 (621)
T KOG2415|consen  232 APK  234 (621)
T ss_pred             Ccc
Confidence            987

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.86  E-value=3.6e-21  Score=142.62  Aligned_cols=143  Identities=36%  Similarity=0.569  Sum_probs=106.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      +++||+||||||+|+++|+.|++      .|++|+||||...++....+++.+.+..+.+....+...   +...+....
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~------~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~---i~~~v~~~~   72 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAK------AGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE---IERKVTGAR   72 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHH------cCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh---hheeeeeeE
Confidence            46899999999999999999999      899999999999998777776777777777776665532   222222211


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------EEeCCEE
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------IATGDVG  174 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------v~~~~~v  174 (182)
                      +...........        .....+.++|..+.++|.+.+++.|++++.+++++++..++++.+++      ....++|
T Consensus        73 ~~~~~~~~~~~~--------~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~v  144 (396)
T COG0644          73 IYFPGEKVAIEV--------PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVV  144 (396)
T ss_pred             EEecCCceEEec--------CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEE
Confidence            111100000111        11338899999999999999999999999999999999877776665      3457999


Q ss_pred             EecCCC
Q psy2240         175 IAKDGS  180 (182)
Q Consensus       175 i~adG~  180 (182)
                      |+|||.
T Consensus       145 I~AdG~  150 (396)
T COG0644         145 IDADGV  150 (396)
T ss_pred             EECCCc
Confidence            999996

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.83  E-value=1.1e-19  Score=135.75  Aligned_cols=152  Identities=27%  Similarity=0.490  Sum_probs=96.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      ..+||+||||||+|+++|+.|++      .|++|+||||.+.++....+++.+....+.+.++.+... ..+........
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~------~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~-~~~~~~~~~~~   76 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAR------EGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADS-APVERLITHEK   76 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHh------CCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhc-Ccccceeeeee
Confidence            35899999999999999999999      899999999998877654555555444444443332211 11111111111


Q ss_pred             HHHHHhhccCCCCCCCC-CCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE------EeCCE
Q psy2240         101 FAYLTKSKRIGIPILPG-MPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI------ATGDV  173 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------~~~~~  173 (182)
                      +.++.......+.+... ........+.+.|..|.++|.+.+++.|++++++++|+++..++ +.++++      ..+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~~~g~~i~A~~  155 (428)
T PRK10157         77 LAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVEADGDVIEAKT  155 (428)
T ss_pred             EEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEEcCCcEEECCE
Confidence            11111111111111100 01112236788999999999999999999999999999997643 444433      35689


Q ss_pred             EEecCCC
Q psy2240         174 GIAKDGS  180 (182)
Q Consensus       174 vi~adG~  180 (182)
                      ||.|+|.
T Consensus       156 VI~A~G~  162 (428)
T PRK10157        156 VILADGV  162 (428)
T ss_pred             EEEEeCC
Confidence            9999996

>PRK10015 oxidoreductase; Provisional

Probab=99.82  E-value=1.6e-19  Score=134.89  Aligned_cols=152  Identities=27%  Similarity=0.507  Sum_probs=94.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      .++||+||||||+|+++|+.|++      .|++|+||||.+.++....+++.+....+...++.+.. ...+........
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~------~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~-~~~i~~~~~~~~   76 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMAR------AGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAA-SAPVERKVTREK   76 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHh------CCCeEEEEecCCCCCcccccCceeecccHHHHcccccc-cCCcccccccee
Confidence            35899999999999999999999      89999999999877654444544433333333222110 011111111111


Q ss_pred             HHHHHhhccCCCCCCCC-CCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE------EeCCE
Q psy2240         101 FAYLTKSKRIGIPILPG-MPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI------ATGDV  173 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------~~~~~  173 (182)
                      +.++........++... ........+.+.|..|.++|.+.+++.|++++.+++|+++..++ +.+.++      ..+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~~~~~~i~A~~  155 (429)
T PRK10015         77 ISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQAGDDILEANV  155 (429)
T ss_pred             EEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEEeCCeEEECCE
Confidence            11111111111111100 00111236788999999999999999999999999999987643 444433      45689


Q ss_pred             EEecCCC
Q psy2240         174 GIAKDGS  180 (182)
Q Consensus       174 vi~adG~  180 (182)
                      ||.|+|.
T Consensus       156 VI~AdG~  162 (429)
T PRK10015        156 VILADGV  162 (429)
T ss_pred             EEEccCc
Confidence            9999996

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.78  E-value=5.1e-18  Score=121.41  Aligned_cols=151  Identities=27%  Similarity=0.302  Sum_probs=95.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-c--ccccC--hhHHhhhhhhHHhcCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-S--GAVID--PIALNELLPDWKDLGAPLNTP   95 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~--~~~~~--~~~~~~~~~~~~~~~~~~~~~   95 (182)
                      +.+||+|||||++|+++|..+++      +|.+|+|||+.+.+|.... +  ++++-  .....+++......+.++...
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~------~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sa   75 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAK------AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSA   75 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhh------cCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHH
Confidence            45799999999999999999999      8999999999998886542 2  22221  111333333322222222222


Q ss_pred             ---ch-hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE-----
Q psy2240          96 ---VH-EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK-----  166 (182)
Q Consensus        96 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~-----  166 (182)
                         ++ .+.+.|+...+ ..+........+   ...-....+.+.|..++++.||+|+.+++|.++..++++..+     
T Consensus        76 l~~ft~~d~i~~~e~~G-i~~~e~~~Gr~F---p~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g  151 (408)
T COG2081          76 LARFTPEDFIDWVEGLG-IALKEEDLGRMF---PDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSG  151 (408)
T ss_pred             HHhCCHHHHHHHHHhcC-CeeEEccCceec---CCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCC
Confidence               22 23444544432 222221111111   111234679999999999999999999999999886533332     


Q ss_pred             -EEEeCCEEEecCCCC
Q psy2240         167 -GIATGDVGIAKDGSP  181 (182)
Q Consensus       167 -~v~~~~~vi~adG~~  181 (182)
                       .+.++.+||+++|.+
T Consensus       152 ~~i~~d~lilAtGG~S  167 (408)
T COG2081         152 ETVKCDSLILATGGKS  167 (408)
T ss_pred             CEEEccEEEEecCCcC
Confidence             266778899999874

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.78  E-value=1.7e-17  Score=115.91  Aligned_cols=130  Identities=28%  Similarity=0.418  Sum_probs=88.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      .++||+|||||++|+++|+.|++      +|++|+|||+.+.+++..+.++.+....                 .+....
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~------~G~~V~liEk~~~~Ggg~~~gg~~~~~~-----------------~v~~~~   80 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAK------AGLKVAVFERKLSFGGGMWGGGMLFNKI-----------------VVQEEA   80 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHh------CCCeEEEEecCCCCCCccccCccccccc-----------------cchHHH
Confidence            46899999999999999999999      8999999999988776544333211110                 001112


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE------------
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI------------  168 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------------  168 (182)
                      ..++..   +.+++.    ....+.+.+++..+...|.+.+++.|++++++++|+++..++++.+.++            
T Consensus        81 ~~~l~~---~gv~~~----~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~  153 (257)
T PRK04176         81 DEILDE---FGIRYK----EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGL  153 (257)
T ss_pred             HHHHHH---CCCCce----eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCC
Confidence            222221   112211    1112245678889999999999999999999999999987555444432            


Q ss_pred             ------EeCCEEEecCCC
Q psy2240         169 ------ATGDVGIAKDGS  180 (182)
Q Consensus       169 ------~~~~~vi~adG~  180 (182)
                            +.+++||.|+|+
T Consensus       154 ~~~~~~i~Ak~VI~ATG~  171 (257)
T PRK04176        154 HVDPLTIEAKAVVDATGH  171 (257)
T ss_pred             CCCcEEEEcCEEEEEeCC
Confidence                  345788888886

>PRK08013 oxidoreductase; Provisional

Probab=99.76  E-value=5.9e-18  Score=125.85  Aligned_cols=149  Identities=21%  Similarity=0.244  Sum_probs=90.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-----cccccCh--hHHhhhhhhHHhcCCCCCc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-----SGAVIDP--IALNELLPDWKDLGAPLNT   94 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~   94 (182)
                      .+||+||||||+|+++|+.|++      .|++|+|||+.+.+.....     ....+.+  ..+.+.++.|.........
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~------~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~   76 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQG------SGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRAS   76 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhh------CCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCc
Confidence            5799999999999999999999      8999999999976432110     1111222  2334444544432211011


Q ss_pred             cchhhhHHHHHhh--ccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEE----
Q psy2240          95 PVHEDKFAYLTKS--KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKG----  167 (182)
Q Consensus        95 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~----  167 (182)
                      ....  +..+...  ....+... .. .....++.+++..|.+.|.+.+.+. +++++++++|++++.++++..+.    
T Consensus        77 ~~~~--~~~~~~~~~~~~~~~~~-~~-~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g  152 (400)
T PRK08013         77 CYHG--MEVWDKDSFGRIAFDDQ-SM-GYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDG  152 (400)
T ss_pred             cccE--EEEEeCCCCceEEEccc-cc-CCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCC
Confidence            1100  0000000  00001000 00 0111256889999999999999874 79999999999998766554332    


Q ss_pred             -EEeCCEEEecCCC
Q psy2240         168 -IATGDVGIAKDGS  180 (182)
Q Consensus       168 -v~~~~~vi~adG~  180 (182)
                       ....++||+|||.
T Consensus       153 ~~i~a~lvVgADG~  166 (400)
T PRK08013        153 SMLTARLVVGADGA  166 (400)
T ss_pred             CEEEeeEEEEeCCC
Confidence             2456999999996

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.75  E-value=9e-18  Score=125.49  Aligned_cols=152  Identities=17%  Similarity=0.208  Sum_probs=87.7

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccChh--HHhhhhhhHHhcCCCCCc
Q psy2240          18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDPI--ALNELLPDWKDLGAPLNT   94 (182)
Q Consensus        18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~   94 (182)
                      .+..++||+||||||+|+++|+.|++      .|++|+||||.+....... .+-.+.+.  .+.+.++.|...... ..
T Consensus        14 ~~~~~~dV~IvGaG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~-~~   86 (415)
T PRK07364         14 TRSLTYDVAIVGGGIVGLTLAAALKD------SGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQ-IG   86 (415)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHhc------CCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhh-cC
Confidence            34456899999999999999999999      8999999999986532111 11123332  233334444432111 00


Q ss_pred             cchhhhHHHHHhhc--cCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEEE---
Q psy2240          95 PVHEDKFAYLTKSK--RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGI---  168 (182)
Q Consensus        95 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~v---  168 (182)
                      ......  ......  ...+.. .... ....++...+..+.+.|.+.+.+. ++++++++++++++.++++..+.+   
T Consensus        87 ~~~~~~--~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~  162 (415)
T PRK07364         87 KFRQIR--LSDADYPGVVKFQP-TDLG-TEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIE  162 (415)
T ss_pred             CccEEE--EEeCCCCceeeecc-ccCC-CCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccC
Confidence            100000  000000  000110 0000 011134444457888898888764 799999999999987555543322   


Q ss_pred             -----EeCCEEEecCCC
Q psy2240         169 -----ATGDVGIAKDGS  180 (182)
Q Consensus       169 -----~~~~~vi~adG~  180 (182)
                           ...++||+|||.
T Consensus       163 ~~~~~i~adlvIgADG~  179 (415)
T PRK07364        163 GKQQTLQSKLVVAADGA  179 (415)
T ss_pred             CcceEEeeeEEEEeCCC
Confidence                 346999999996

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.75  E-value=1.4e-17  Score=110.29  Aligned_cols=131  Identities=28%  Similarity=0.383  Sum_probs=83.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      .++||+|||+||+|+++|+.|++      .|++|++||+...+||..+.++.+.....                 +....
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~------~g~kV~v~E~~~~~GGg~~~Gg~lf~~iV-----------------Vq~~a   72 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAK------AGLKVAVIERKLSPGGGMWGGGMLFNKIV-----------------VQEEA   72 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHH------HTS-EEEEESSSS-BTTTTS-CTT---EE-----------------EETTT
T ss_pred             ccCCEEEECCChhHHHHHHHHHH------CCCeEEEEecCCCCCccccccccccchhh-----------------hhhhH
Confidence            46899999999999999999999      89999999999988876665544322111                 11111


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe----------
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT----------  170 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~----------  170 (182)
                      ...+.. -...+..      +..+.+..+..++...|...+.+.|++|+..+.|+++..-++.++.|+..          
T Consensus        73 ~~iL~e-lgi~y~~------~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~gl  145 (230)
T PF01946_consen   73 DEILDE-LGIPYEE------YGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGL  145 (230)
T ss_dssp             HHHHHH-HT---EE-------SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--
T ss_pred             HHHHHh-CCceeEE------eCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhc
Confidence            111111 1111111      22235678899999999999988999999999999987644467777543          


Q ss_pred             --------CCEEEecCCCC
Q psy2240         171 --------GDVGIAKDGSP  181 (182)
Q Consensus       171 --------~~~vi~adG~~  181 (182)
                              +++||.|.|+.
T Consensus       146 HvDPl~i~ak~ViDaTGHd  164 (230)
T PF01946_consen  146 HVDPLTIRAKVVIDATGHD  164 (230)
T ss_dssp             T-B-EEEEESEEEE---SS
T ss_pred             CCCcceEEEeEEEeCCCCc
Confidence                    48999999984

>PRK06184 hypothetical protein; Provisional

Probab=99.75  E-value=1.8e-17  Score=126.57  Aligned_cols=147  Identities=21%  Similarity=0.216  Sum_probs=90.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhc---CCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDL---GAPLNTP   95 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~   95 (182)
                      .++||+||||||+|+++|+.|++      .|++|+||||.+.+.... .+..+.+..  +.+.++.+...   +......
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~------~Gi~v~viE~~~~~~~~~-ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~   74 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELAR------RGVSFRLIEKAPEPFPGS-RGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPM   74 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCCCCCcCc-cceeecHHHHHHHHHcCcHHHHHhcCccccce
Confidence            35899999999999999999999      899999999987654222 222233332  23333333322   1111000


Q ss_pred             chhhhHHHHHhhcc---CCCCC-CCC-CCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE--
Q psy2240          96 VHEDKFAYLTKSKR---IGIPI-LPG-MPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI--  168 (182)
Q Consensus        96 ~~~~~~~~~~~~~~---~~~~~-~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v--  168 (182)
                      .      .+.....   ..... ... .....+....+++..+.+.|.+.+.+.|++|++++++++++.++++..+.+  
T Consensus        75 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~  148 (502)
T PRK06184         75 R------IYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAG  148 (502)
T ss_pred             e------EEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEe
Confidence            0      0000000   00000 000 000111245788889999999999888999999999999987666543322  


Q ss_pred             ------EeCCEEEecCCC
Q psy2240         169 ------ATGDVGIAKDGS  180 (182)
Q Consensus       169 ------~~~~~vi~adG~  180 (182)
                            ...++||+|||+
T Consensus       149 ~~~~~~i~a~~vVgADG~  166 (502)
T PRK06184        149 PAGEETVRARYLVGADGG  166 (502)
T ss_pred             CCCeEEEEeCEEEECCCC
Confidence                  346999999997

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.75  E-value=7.9e-17  Score=106.48  Aligned_cols=131  Identities=26%  Similarity=0.437  Sum_probs=92.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      .+.||+|||+||+||++|+.|++      +|++|+++||.-.+||..+.++.+.+.-.                  -.+.
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk------~g~kV~i~E~~ls~GGG~w~GGmlf~~iV------------------v~~~   84 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAK------AGLKVAIFERKLSFGGGIWGGGMLFNKIV------------------VREE   84 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHh------CCceEEEEEeecccCCcccccccccceee------------------ecch
Confidence            35799999999999999999999      89999999999999887776655422111                  0001


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe----------
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT----------  170 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~----------  170 (182)
                      -..+...  +..+..    ....+.+..+...+...|...+.+.|++|+..+.|+++..-++.++.|+..          
T Consensus        85 a~~iL~e--~gI~ye----~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~l  158 (262)
T COG1635          85 ADEILDE--FGIRYE----EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGL  158 (262)
T ss_pred             HHHHHHH--hCCcce----ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhccc
Confidence            1111111  111111    122225677888999999999999999999999999987634436666443          


Q ss_pred             --------CCEEEecCCCC
Q psy2240         171 --------GDVGIAKDGSP  181 (182)
Q Consensus       171 --------~~~vi~adG~~  181 (182)
                              +++||.+.|+.
T Consensus       159 hvDPl~i~a~~VvDaTGHd  177 (262)
T COG1635         159 HVDPLTIRAKAVVDATGHD  177 (262)
T ss_pred             ccCcceeeEEEEEeCCCCc
Confidence                    48899999973

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.74  E-value=8.9e-17  Score=111.94  Aligned_cols=130  Identities=27%  Similarity=0.465  Sum_probs=87.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      .++||+|||||++|+++|+.|++      +|++|+||||...+++..+.++.+.+..                 ......
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~------~G~~V~vlEk~~~~Ggg~~~gg~~~~~~-----------------~~~~~~   76 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAK------NGLKVCVLERSLAFGGGSWGGGMLFSKI-----------------VVEKPA   76 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCccccCCCcceecc-----------------cccchH
Confidence            46899999999999999999999      8999999999998876554333221110                 000111


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC-cEEEE-----------
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG-SVKGI-----------  168 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g-~~~~v-----------  168 (182)
                      ..++..   +.++..    ....+.+..++..+.+.|.+.+.+.|+++++++.|+++..++++ ++.++           
T Consensus        77 ~~~l~~---~gi~~~----~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g  149 (254)
T TIGR00292        77 HEILDE---FGIRYE----DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAG  149 (254)
T ss_pred             HHHHHH---CCCCee----eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccC
Confidence            122221   112111    01112345578899999999999999999999999999875542 44443           


Q ss_pred             -------EeCCEEEecCCC
Q psy2240         169 -------ATGDVGIAKDGS  180 (182)
Q Consensus       169 -------~~~~~vi~adG~  180 (182)
                             +.+++||.|+|+
T Consensus       150 ~~~d~~~i~Ak~VVdATG~  168 (254)
T TIGR00292       150 LHVDPLTQRSRVVVDATGH  168 (254)
T ss_pred             CCCCCEEEEcCEEEEeecC
Confidence                   235888999885

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.74  E-value=2.2e-17  Score=122.62  Aligned_cols=151  Identities=23%  Similarity=0.208  Sum_probs=91.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccc----cccChh--HHhhhhhhHHhcCCCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG----AVIDPI--ALNELLPDWKDLGAPLN   93 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~   93 (182)
                      ...+||+||||||+|+++|+.|++      +|++|+||||.+.+.......    ..+.+.  .+.+.++.|........
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~------~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~   77 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALAD------AGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARA   77 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhc------CCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhC
Confidence            456899999999999999999999      899999999987543111100    112222  33444555554321111


Q ss_pred             ccchhhhHHHHHhh--ccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----
Q psy2240          94 TPVHEDKFAYLTKS--KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----  167 (182)
Q Consensus        94 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----  167 (182)
                      ......  ..+...  ....++.. . ......++.+++..+.+.|.+.+++.|++++++++|++++.++++..+.    
T Consensus        78 ~~~~~~--~~~~~~~~~~~~~~~~-~-~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g  153 (392)
T PRK08773         78 QPYRRM--RVWDAGGGGELGFDAD-T-LGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDG  153 (392)
T ss_pred             CcccEE--EEEeCCCCceEEechh-c-cCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCC
Confidence            111000  000000  00111100 0 0011125678899999999999999999999999999998755443321    


Q ss_pred             -EEeCCEEEecCCC
Q psy2240         168 -IATGDVGIAKDGS  180 (182)
Q Consensus       168 -v~~~~~vi~adG~  180 (182)
                       ....++||+|||.
T Consensus       154 ~~~~a~~vV~AdG~  167 (392)
T PRK08773        154 RRLEAALAIAADGA  167 (392)
T ss_pred             CEEEeCEEEEecCC
Confidence             2456899999997

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.73  E-value=2.4e-17  Score=121.68  Aligned_cols=148  Identities=28%  Similarity=0.338  Sum_probs=74.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc---cccccChh---HHhhhhhhHHhcCCCCCccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL---SGAVIDPI---ALNELLPDWKDLGAPLNTPV   96 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   96 (182)
                      |||+|||||++|+++|+.|++      .|.+|+||||.+..+....   .|.++-..   ....+..........+...+
T Consensus         1 ydviIIGgGaAGl~aA~~aa~------~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l   74 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAE------KGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSAL   74 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHH------TT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHh------CCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHH
Confidence            699999999999999999999      8999999999998875432   22222111   11111111111111221111


Q ss_pred             ----hhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----
Q psy2240          97 ----HEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----  167 (182)
Q Consensus        97 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----  167 (182)
                          ..+.+.++...+ .......+...++   ..-....+...|.+.+++.|++|+++++|.+|+.++++ +..     
T Consensus        75 ~~f~~~d~~~ff~~~G-v~~~~~~~gr~fP---~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~f~v~~~~  149 (409)
T PF03486_consen   75 KRFSPEDLIAFFEELG-VPTKIEEDGRVFP---KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDG-VFGVKTKN  149 (409)
T ss_dssp             HHS-HHHHHHHHHHTT---EEE-STTEEEE---TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTE-EEEEEETT
T ss_pred             hcCCHHHHHHHHHhcC-CeEEEcCCCEECC---CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCc-eeEeeccC
Confidence                123344444322 2222211111111   12245689999999999999999999999999875544 333     


Q ss_pred             ---EEeCCEEEecCCCC
Q psy2240         168 ---IATGDVGIAKDGSP  181 (182)
Q Consensus       168 ---v~~~~~vi~adG~~  181 (182)
                         +.++.+|||++|.+
T Consensus       150 ~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  150 GGEYEADAVILATGGKS  166 (409)
T ss_dssp             TEEEEESEEEE----SS
T ss_pred             cccccCCEEEEecCCCC
Confidence               34567888988875

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.73  E-value=3.1e-17  Score=120.99  Aligned_cols=145  Identities=19%  Similarity=0.240  Sum_probs=90.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc---ccccccChh--HHhhhhhhHHhcCCCCCccch
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI---LSGAVIDPI--ALNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   97 (182)
                      +||+||||||+|+++|+.|++      .|++|+|+|+.+......   ..+..+.+.  .+.+.++.|+.... ...++.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~------~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~-~~~~~~   74 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQ------KGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEK-FVAEMQ   74 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHc------CCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHh-hcCCCc
Confidence            689999999999999999999      899999999975322111   112223333  24455555654321 111111


Q ss_pred             hhhHHHHHhhc--cCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC-cEEecCCccceeEEcCCCcEEE----EEe
Q psy2240          98 EDKFAYLTKSK--RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKG----IAT  170 (182)
Q Consensus        98 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~~~~~g~~~~----v~~  170 (182)
                      ...  ......  ...+...    .....++.+++..|.+.|.+.+.+.+ ++++++++++++..++++..+.    ...
T Consensus        75 ~~~--~~~~~g~~~~~~~~~----~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~~~~  148 (374)
T PRK06617         75 DIY--VVDNKASEILDLRND----ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDKQIK  148 (374)
T ss_pred             EEE--EEECCCceEEEecCC----CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCCEEe
Confidence            100  000000  0111110    11122688999999999999998865 8999999999998755544332    345


Q ss_pred             CCEEEecCCC
Q psy2240         171 GDVGIAKDGS  180 (182)
Q Consensus       171 ~~~vi~adG~  180 (182)
                      .++||+|||.
T Consensus       149 adlvIgADG~  158 (374)
T PRK06617        149 CNLLIICDGA  158 (374)
T ss_pred             eCEEEEeCCC
Confidence            6999999997

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.73  E-value=4.3e-17  Score=121.47  Aligned_cols=151  Identities=20%  Similarity=0.190  Sum_probs=89.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc-------ccccccCh--hHHhhhhhhHHhcCCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI-------LSGAVIDP--IALNELLPDWKDLGAPL   92 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~   92 (182)
                      ++||+||||||+|+++|+.|++      .|++|+|||+.+......       ..+..+.+  ..+.+.++.|.......
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~------~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~   75 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQG------SGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARR   75 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhc------CCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhh
Confidence            4799999999999999999999      899999999986321100       01112222  23334445454321110


Q ss_pred             CccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----
Q psy2240          93 NTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----  167 (182)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----  167 (182)
                      ..+...  +..+....................++.+++..+.+.|.+.+++.|+++++++++++++.++++..+.     
T Consensus        76 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~  153 (405)
T PRK05714         76 ASPYSE--MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGR  153 (405)
T ss_pred             Ccccee--EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCC
Confidence            001000  0000000000000000000011124678888999999999988899999999999998766554332     


Q ss_pred             EEeCCEEEecCCC
Q psy2240         168 IATGDVGIAKDGS  180 (182)
Q Consensus       168 v~~~~~vi~adG~  180 (182)
                      ....++||+|||.
T Consensus       154 ~~~a~~vVgAdG~  166 (405)
T PRK05714        154 QLRAPLVVAADGA  166 (405)
T ss_pred             EEEeCEEEEecCC
Confidence            3456999999997

>PRK06834 hypothetical protein; Provisional

Probab=99.73  E-value=1.8e-16  Score=120.23  Aligned_cols=146  Identities=21%  Similarity=0.222  Sum_probs=90.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHHhcCCCCCccchh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWKDLGAPLNTPVHE   98 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   98 (182)
                      .++||+||||||+|+++|+.|++      +|++|+||||.+.+......+..+.+..+  .+.++.|....... .....
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~------~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~-~~~~~   74 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELAL------AGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQG-QVAQV   74 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcC-Ccccc
Confidence            45899999999999999999999      89999999998754311111222333332  33334444321110 00000


Q ss_pred             hhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCE
Q psy2240          99 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDV  173 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~  173 (182)
                      ..+    ....+....   .+...+..+.+.+..+.+.|.+.+++.|++|+++++|++++.++++..+.     ....++
T Consensus        75 ~~~----~~~~~~~~~---~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~  147 (488)
T PRK06834         75 TGF----AATRLDISD---FPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQY  147 (488)
T ss_pred             cee----eeEeccccc---CCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCE
Confidence            000    000111111   11111224567888999999999998999999999999998766554332     345699


Q ss_pred             EEecCCC
Q psy2240         174 GIAKDGS  180 (182)
Q Consensus       174 vi~adG~  180 (182)
                      ||+|||+
T Consensus       148 vVgADG~  154 (488)
T PRK06834        148 LVGCDGG  154 (488)
T ss_pred             EEEecCC
Confidence            9999997

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.72  E-value=9.7e-17  Score=118.85  Aligned_cols=144  Identities=31%  Similarity=0.395  Sum_probs=88.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC-CCCCccccccccChhHH--hhhhhhH---HhcCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA-EVGGHILSGAVIDPIAL--NELLPDW---KDLGAPLNTP   95 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~-~~~g~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~   95 (182)
                      .+||+||||||+|+++|+.|++      .|++|+|||+.+ ..... .-+..+.+..+  .+.++.+   ..........
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~------~G~~V~l~E~~~~~~~~~-~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~   74 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALAR------AGLDVTLLERAPRELLER-GRGIALSPNALRALERLGLWDRLEALGVPPLHV   74 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHh------CCCcEEEEccCccccccC-ceeeeecHhHHHHHHHcCChhhhhhccCCceee
Confidence            4699999999999999999999      899999999983 22111 12222333322  2223321   1111111110


Q ss_pred             c--hhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC-cEEecCCccceeEEcCCCcEEE-----
Q psy2240          96 V--HEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKG-----  167 (182)
Q Consensus        96 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~~~~~g~~~~-----  167 (182)
                      .  .....    ....++......    ....+.+++..+...|.+.+.+.+ ++++++++|+.++.+++...+.     
T Consensus        75 ~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG  146 (387)
T COG0654          75 MVVDDGGR----RLLIFDAAELGR----GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDG  146 (387)
T ss_pred             EEEecCCc----eeEEecccccCC----CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCC
Confidence            0  00000    000111111111    233778999999999999998865 9999999999998866443332     


Q ss_pred             -EEeCCEEEecCCC
Q psy2240         168 -IATGDVGIAKDGS  180 (182)
Q Consensus       168 -v~~~~~vi~adG~  180 (182)
                       ...++++|+|||.
T Consensus       147 ~~~~a~llVgADG~  160 (387)
T COG0654         147 ETLDADLLVGADGA  160 (387)
T ss_pred             cEEecCEEEECCCC
Confidence             2357999999996

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.72  E-value=4.6e-17  Score=119.06  Aligned_cols=150  Identities=24%  Similarity=0.307  Sum_probs=87.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHHhc---CC--CCCc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWKDL---GA--PLNT   94 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~---~~--~~~~   94 (182)
                      ++||+||||||+|+++|+.|++      +|++|+||||.+...... .+..+.+..+  .+.++.+...   ..  ....
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~------~G~~v~i~E~~~~~~~~~-~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   73 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALAR------AGIDVTIIERRPDPRPKG-RGIGLSPNSLRILQRLGLLDEILARGSPHEVMR   73 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHH------TTCEEEEEESSSSCCCSS-SSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHh------cccccccchhcccccccc-cccccccccccccccccchhhhhhhccccccee
Confidence            4799999999999999999999      899999999998754322 2233333332  2222333321   10  0000


Q ss_pred             cchhhhHHHH---HhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----
Q psy2240          95 PVHEDKFAYL---TKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----  167 (182)
Q Consensus        95 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----  167 (182)
                      ......+...   ...... ..... ..........+++..+.+.|.+.+++.|+++++++++++++.++++....    
T Consensus        74 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~  151 (356)
T PF01494_consen   74 IFFYDGISDSRIWVENPQI-REDME-IDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDG  151 (356)
T ss_dssp             EEEEEETTTSEEEEEEEEE-EEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEET
T ss_pred             eEeecccCCccceeeeccc-ceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccc
Confidence            0000000000   000000 00000 01122235678899999999999999999999999999998766553322    


Q ss_pred             ------EEeCCEEEecCCC
Q psy2240         168 ------IATGDVGIAKDGS  180 (182)
Q Consensus       168 ------v~~~~~vi~adG~  180 (182)
                            .+..++||+|||+
T Consensus       152 ~~g~~~~i~adlvVgADG~  170 (356)
T PF01494_consen  152 EDGEEETIEADLVVGADGA  170 (356)
T ss_dssp             CTCEEEEEEESEEEE-SGT
T ss_pred             cCCceeEEEEeeeecccCc
Confidence                  2346899999997

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08244 hypothetical protein; Provisional

Probab=99.71  E-value=1.8e-16  Score=120.83  Aligned_cols=146  Identities=23%  Similarity=0.342  Sum_probs=90.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhcCCCCCccchhh
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      ++||+||||||+|+++|+.|++      .|++|+||||.+..... ..+..+.+..  +.+.++.++..... .......
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~------~G~~v~viEr~~~~~~~-~ra~~l~~~~~e~l~~lGl~~~l~~~-~~~~~~~   73 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELAL------AGVKTCVIERLKETVPY-SKALTLHPRTLEILDMRGLLERFLEK-GRKLPSG   73 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCCC-cceeEecHHHHHHHHhcCcHHHHHhh-cccccce
Confidence            4799999999999999999999      89999999999764321 1222333332  23334443332110 0000000


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE--------EEeC
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--------IATG  171 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~--------v~~~  171 (182)
                      .+  ........+...   ....+..+.+++..+.+.|.+.+++.|+++++++++++++.++++..+.        ....
T Consensus        74 ~~--~~~~~~~~~~~~---~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a  148 (493)
T PRK08244         74 HF--AGLDTRLDFSAL---DTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTS  148 (493)
T ss_pred             EE--ecccccCCcccC---CCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEe
Confidence            00  000011111111   1111224568899999999999988899999999999998765553322        2356


Q ss_pred             CEEEecCCC
Q psy2240         172 DVGIAKDGS  180 (182)
Q Consensus       172 ~~vi~adG~  180 (182)
                      ++||+|||.
T Consensus       149 ~~vVgADG~  157 (493)
T PRK08244        149 SYVVGADGA  157 (493)
T ss_pred             CEEEECCCC
Confidence            999999997

>PRK06996 hypothetical protein; Provisional

Probab=99.71  E-value=1e-16  Score=119.23  Aligned_cols=148  Identities=21%  Similarity=0.261  Sum_probs=92.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCC----ceEEEEecCCCCCCccc-cccccC--hhHHhhhhhhHHhcCCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE----LKVCLVEKAAEVGGHIL-SGAVID--PIALNELLPDWKDLGAPLN   93 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g----~~v~vlE~~~~~~g~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~   93 (182)
                      ..+||+||||||+|+++|+.|++      +|    ++|+|+|+.+....... -+..+.  ...+.+.++.|......+.
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~------~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~   83 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLAR------RSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIE   83 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhc------CCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCccc
Confidence            45799999999999999999998      65    58999999864321111 111222  2344555666665332222


Q ss_pred             ccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------
Q psy2240          94 TPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------  167 (182)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------  167 (182)
                      .....+..    ......+.. .+.. ....++.+++..+.+.|.+.+.+.++++++++++++++.+.++..+.      
T Consensus        84 ~~~~~~~~----~~g~~~~~~-~~~~-~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g  157 (398)
T PRK06996         84 HIHVSQRG----HFGRTLIDR-DDHD-VPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQG  157 (398)
T ss_pred             EEEEecCC----CCceEEecc-cccC-CCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCc
Confidence            11100000    000000100 0111 11236789999999999999999999999999999997765554332      


Q ss_pred             --EEeCCEEEecCCC
Q psy2240         168 --IATGDVGIAKDGS  180 (182)
Q Consensus       168 --v~~~~~vi~adG~  180 (182)
                        ....++||+|||+
T Consensus       158 ~~~i~a~lvIgADG~  172 (398)
T PRK06996        158 ARTLRARIAVQAEGG  172 (398)
T ss_pred             ceEEeeeEEEECCCC
Confidence              3456999999995

>PRK09126 hypothetical protein; Provisional

Probab=99.70  E-value=1.5e-16  Score=118.18  Aligned_cols=152  Identities=22%  Similarity=0.286  Sum_probs=86.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC--cccccc--ccChh--HHhhhhhhHHhcCCCCCc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG--HILSGA--VIDPI--ALNELLPDWKDLGAPLNT   94 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g--~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~   94 (182)
                      +++||+||||||+|+++|+.|++      +|++|+|+||.+.+.-  ....+.  .+.+.  .+.+.++.+.........
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~   75 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAG------SGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEIS   75 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHh------CCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCC
Confidence            36899999999999999999999      8999999999976421  111111  12221  222333333322111000


Q ss_pred             cchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEE-----E
Q psy2240          95 PVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKG-----I  168 (182)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~-----v  168 (182)
                      +.....  ......................++.+++..+.+.|.+.+.+ .|++|+++++|++++.++++..+.     .
T Consensus        76 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~  153 (392)
T PRK09126         76 PLRDAK--VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRR  153 (392)
T ss_pred             ccceEE--EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCE
Confidence            100000  00000000000000000011124567888899999888754 689999999999998755443221     3


Q ss_pred             EeCCEEEecCCC
Q psy2240         169 ATGDVGIAKDGS  180 (182)
Q Consensus       169 ~~~~~vi~adG~  180 (182)
                      ...++||+|||.
T Consensus       154 ~~a~~vI~AdG~  165 (392)
T PRK09126        154 LTARLLVAADSR  165 (392)
T ss_pred             EEeCEEEEeCCC
Confidence            456899999996

>PRK07190 hypothetical protein; Provisional

Probab=99.70  E-value=2.7e-16  Score=119.24  Aligned_cols=147  Identities=21%  Similarity=0.279  Sum_probs=89.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhc---CCCCCcc-
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDL---GAPLNTP-   95 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~-   95 (182)
                      .+||+||||||+|+++|+.|++      .|++|+||||.+.+.... .+..+.+..  +.+.++.|...   ....... 
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar------~Gi~V~llEr~~~~~~~g-ra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~   77 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQL------CGLNTVIVDKSDGPLEVG-RADALNARTLQLLELVDLFDELYPLGKPCNTSS   77 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHH------cCCCEEEEeCCCcccccc-cceEeCHHHHHHHHhcChHHHHHhhCccceeEE
Confidence            4799999999999999999999      899999999998654221 122233332  23333433322   1111110 


Q ss_pred             chhhhHHHHHhhccCCCCCCCCCC-CCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EE
Q psy2240          96 VHEDKFAYLTKSKRIGIPILPGMP-MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IA  169 (182)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~  169 (182)
                      ..... ..+.    .......... ...+....+++..+++.|.+.+++.|++++++++|++++.++++..+.     ..
T Consensus        78 ~~~~g-~~i~----~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v  152 (487)
T PRK07190         78 VWANG-KFIS----RQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERI  152 (487)
T ss_pred             EecCC-ceEe----eccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEE
Confidence            00000 0000    0000000000 011113457788899999999998999999999999998866654332     34


Q ss_pred             eCCEEEecCCC
Q psy2240         170 TGDVGIAKDGS  180 (182)
Q Consensus       170 ~~~~vi~adG~  180 (182)
                      .+++||+|||+
T Consensus       153 ~a~~vVgADG~  163 (487)
T PRK07190        153 QSRYVIGADGS  163 (487)
T ss_pred             EeCEEEECCCC
Confidence            56999999997

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.70  E-value=9.1e-17  Score=118.96  Aligned_cols=147  Identities=21%  Similarity=0.252  Sum_probs=87.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc----ccccccChhH--HhhhhhhHHhcCCCCCccch
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI----LSGAVIDPIA--LNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   97 (182)
                      ||+|||||++|+++|+.|++      +|++|+|+||.+.++...    ..+..+.+..  ..+.++.+............
T Consensus         1 dViIvGaG~aGl~~A~~L~~------~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~   74 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALAR------SGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIR   74 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhc------CCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCce
Confidence            79999999999999999999      899999999998653211    1112233322  22233333222110001100


Q ss_pred             hhhHHHHHhhcc--CCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC-cEEecCCccceeEEcCCCcEEE-----EE
Q psy2240          98 EDKFAYLTKSKR--IGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKG-----IA  169 (182)
Q Consensus        98 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~~~~~g~~~~-----v~  169 (182)
                      .  +..+.....  ..+... .. ......+.+++..+.+.|.+.+.+.+ ++++++++|++++.++++..+.     ..
T Consensus        75 ~--~~~~~~~~~~~~~~~~~-~~-~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~  150 (385)
T TIGR01988        75 D--IHVSDGGSFGALHFDAD-EI-GLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQL  150 (385)
T ss_pred             E--EEEEeCCCCceEEechh-hc-CCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEE
Confidence            0  000000000  001100 00 01122567899999999999998887 9999999999998755443221     23


Q ss_pred             eCCEEEecCCC
Q psy2240         170 TGDVGIAKDGS  180 (182)
Q Consensus       170 ~~~~vi~adG~  180 (182)
                      ..++||+|||.
T Consensus       151 ~~~~vi~adG~  161 (385)
T TIGR01988       151 RARLLVGADGA  161 (385)
T ss_pred             EeeEEEEeCCC
Confidence            46899999996

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.70  E-value=1.2e-16  Score=119.03  Aligned_cols=151  Identities=19%  Similarity=0.237  Sum_probs=88.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC-CCCC-Ccc--ccccccCh--hHHhhhhhhHHhcCCCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA-AEVG-GHI--LSGAVIDP--IALNELLPDWKDLGAPLN   93 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~-~~~~-g~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~   93 (182)
                      |..+||+||||||+|+++|+.|++      .|++|+|||+. +... +..  .-+..+.+  ..+.+.++.|+.......
T Consensus         2 m~~~dV~IvGaG~~Gl~~A~~L~~------~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~   75 (405)
T PRK08850          2 MQSVDVAIIGGGMVGLALAAALKE------SDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRA   75 (405)
T ss_pred             CCcCCEEEECccHHHHHHHHHHHh------CCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhC
Confidence            346899999999999999999999      89999999996 3211 100  01112222  234445555554321111


Q ss_pred             ccchhhhHHHHHhh--ccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEE---
Q psy2240          94 TPVHEDKFAYLTKS--KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKG---  167 (182)
Q Consensus        94 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~---  167 (182)
                      .+...  +..+...  ....+..  ........++.+++..+.+.|.+.+.+ .+++++++++|++++.++++..+.   
T Consensus        76 ~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~  151 (405)
T PRK08850         76 APYIA--MEVWEQDSFARIEFDA--ESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDN  151 (405)
T ss_pred             CcccE--EEEEeCCCCceEEEec--cccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECC
Confidence            11100  0000000  0000100  000011125677888899999998876 479999999999998755543332   


Q ss_pred             --EEeCCEEEecCCC
Q psy2240         168 --IATGDVGIAKDGS  180 (182)
Q Consensus       168 --v~~~~~vi~adG~  180 (182)
                        ....++||+|||.
T Consensus       152 g~~~~a~lvIgADG~  166 (405)
T PRK08850        152 GQALTAKLVVGADGA  166 (405)
T ss_pred             CCEEEeCEEEEeCCC
Confidence              3456999999996

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.70  E-value=4e-16  Score=111.52  Aligned_cols=140  Identities=31%  Similarity=0.398  Sum_probs=87.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      +||+|||||++|+++|+.|++      .|++|+||||.+..+. ..++..+.+..+. .+..+...   ........  .
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~------~g~~v~vie~~~~~~~-~~~~~~~~~~~~~-~l~~~~~~---~~~~~~~~--~   67 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLAD------KGLRVLLLEKKSFPRY-KPCGGALSPRVLE-ELDLPLEL---IVNLVRGA--R   67 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCCCCc-ccccCccCHhHHH-HhcCCchh---hhhheeeE--E
Confidence            699999999999999999999      8999999999986653 2233333333322 11111100   00000000  0


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------EEeCCEEEe
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------IATGDVGIA  176 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------v~~~~~vi~  176 (182)
                      ++...... .    ..+......+.+++..+.+.|.+.+++.|++++++++|+++..++++..+.      ....++||.
T Consensus        68 ~~~~~~~~-~----~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~  142 (295)
T TIGR02032        68 FFSPNGDS-V----EIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIG  142 (295)
T ss_pred             EEcCCCcE-E----EeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEE
Confidence            00000000 0    001112235678999999999999999999999999999997755443221      345689999


Q ss_pred             cCCC
Q psy2240         177 KDGS  180 (182)
Q Consensus       177 adG~  180 (182)
                      |+|.
T Consensus       143 a~G~  146 (295)
T TIGR02032       143 ADGS  146 (295)
T ss_pred             CCCc
Confidence            9996

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.69  E-value=1.2e-16  Score=119.10  Aligned_cols=149  Identities=21%  Similarity=0.312  Sum_probs=88.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCCCCCCcc-ccccccChh--HHhhhhhhHHhcCCCCCccch
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAEVGGHI-LSGAVIDPI--ALNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~~~~g~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   97 (182)
                      +||+||||||+|+++|+.|++      +|  ++|+||||.+...... ..+..+.+.  .+.+.++.|+..... .....
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~------~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~   74 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQ------AAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPE-AQPIT   74 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhc------CCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhh-cCccc
Confidence            799999999999999999999      64  9999999987532111 122233332  333444444332110 11100


Q ss_pred             hhhHHHHHhhcc-----CCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----
Q psy2240          98 EDKFAYLTKSKR-----IGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----  167 (182)
Q Consensus        98 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----  167 (182)
                      ..  ........     .............+..+.+++..+.+.|.+.+.+.|++++++++|++++.++++..+.     
T Consensus        75 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~  152 (403)
T PRK07333         75 DM--VITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGS  152 (403)
T ss_pred             EE--EEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCC
Confidence            00  00000000     0000000000011124578999999999999988999999999999998655443221     


Q ss_pred             EEeCCEEEecCCC
Q psy2240         168 IATGDVGIAKDGS  180 (182)
Q Consensus       168 v~~~~~vi~adG~  180 (182)
                      ....++||+|||.
T Consensus       153 ~~~ad~vI~AdG~  165 (403)
T PRK07333        153 VLEARLLVAADGA  165 (403)
T ss_pred             EEEeCEEEEcCCC
Confidence            2456999999996

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.69  E-value=3e-16  Score=116.19  Aligned_cols=150  Identities=17%  Similarity=0.205  Sum_probs=87.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC--Cc-cccc--cccCh--hHHhhhhhhHHhcCCCCCc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG--GH-ILSG--AVIDP--IALNELLPDWKDLGAPLNT   94 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~--g~-~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~   94 (182)
                      ++||+||||||+|+++|+.|++      .|++|+|||+.+...  .. ....  ..+.+  ..+.+.++.|+........
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~------~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~   76 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAK------QGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVC   76 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHh------CCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCC
Confidence            4799999999999999999999      899999999875211  00 0000  12222  3444555655543211001


Q ss_pred             cchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEE-----E
Q psy2240          95 PVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKG-----I  168 (182)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~-----v  168 (182)
                      +..... .+........+.. .... ....++.+.+..+...|.+.+.. .+++++++++|++++.++++..+.     .
T Consensus        77 ~~~~~~-~~~~~~~~~~~~~-~~~~-~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~  153 (384)
T PRK08849         77 PYKRLE-TWEHPECRTRFHS-DELN-LDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAE  153 (384)
T ss_pred             ccceEE-EEeCCCceEEecc-cccC-CCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCE
Confidence            110000 0000000000000 0000 11124566667888889888766 479999999999998766654442     3


Q ss_pred             EeCCEEEecCCC
Q psy2240         169 ATGDVGIAKDGS  180 (182)
Q Consensus       169 ~~~~~vi~adG~  180 (182)
                      ...++||+|||.
T Consensus       154 ~~~~lvIgADG~  165 (384)
T PRK08849        154 IEAKWVIGADGA  165 (384)
T ss_pred             EEeeEEEEecCC
Confidence            456999999997

>PRK06185 hypothetical protein; Provisional

Probab=99.69  E-value=2.9e-16  Score=117.18  Aligned_cols=151  Identities=21%  Similarity=0.335  Sum_probs=88.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccCh--hHHhhhhhhHHhcCCCCCccch
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDP--IALNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   97 (182)
                      ..++||+|||||++|+++|+.|++      .|++|+|||+.+..... ..+..+.+  ..+.+.++.|............
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~------~G~~v~liE~~~~~~~~-~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~   76 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLAR------AGVDVTVLEKHADFLRD-FRGDTVHPSTLELMDELGLLERFLELPHQKVR   76 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCccCcc-ccCceeChhHHHHHHHcCChhHHhhcccceee
Confidence            456899999999999999999999      89999999998643211 11222222  2344444555443210001110


Q ss_pred             hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEE---------
Q psy2240          98 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKG---------  167 (182)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~---------  167 (182)
                      .  +.+.........-.+.......+..+.+++..+.+.|.+.+.+ .+++++++++|+++..+++ .+.+         
T Consensus        77 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~-~v~~v~~~~~~g~  153 (407)
T PRK06185         77 T--LRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGG-RVTGVRARTPDGP  153 (407)
T ss_pred             e--EEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCC-EEEEEEEEcCCCc
Confidence            0  0000000000000000011111224567888999999998876 4899999999999987543 3321         


Q ss_pred             -EEeCCEEEecCCC
Q psy2240         168 -IATGDVGIAKDGS  180 (182)
Q Consensus       168 -v~~~~~vi~adG~  180 (182)
                       ....++||+|||.
T Consensus       154 ~~i~a~~vI~AdG~  167 (407)
T PRK06185        154 GEIRADLVVGADGR  167 (407)
T ss_pred             EEEEeCEEEECCCC
Confidence             3456899999997

>PRK07045 putative monooxygenase; Reviewed

Probab=99.69  E-value=6.6e-16  Score=114.57  Aligned_cols=149  Identities=18%  Similarity=0.192  Sum_probs=88.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh--HHhhhhhhHHhcCCCCCccchh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVHE   98 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   98 (182)
                      ..+||+||||||+|+++|+.|++      .|++|+|+||.+.+.... .+..+.+.  .+.+.++.|...........  
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~------~G~~v~v~E~~~~~~~~~-~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~--   74 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGA------RGHSVTVVERAARNRAQN-GADLLKPSGIGVVRAMGLLDDVFAAGGLRR--   74 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHh------cCCcEEEEeCCCcccCCC-cccccCccHHHHHHHcCCHHHHHhcccccc--
Confidence            45799999999999999999999      899999999998653211 11112222  23344444433211000000  


Q ss_pred             hhHHHHHhhc-cCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEE-------E
Q psy2240          99 DKFAYLTKSK-RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGI-------A  169 (182)
Q Consensus        99 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v-------~  169 (182)
                      ..+..+.... ....+. ...... .....+++..+.+.|.+.+.. .|++++++++|++++.++++.++.+       .
T Consensus        75 ~~~~~~~~g~~~~~~~~-~~~~~~-g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~  152 (388)
T PRK07045         75 DAMRLYHDKELIASLDY-RSASAL-GYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERV  152 (388)
T ss_pred             cceEEecCCcEEEEecC-CccccC-CceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEE
Confidence            0000000000 000111 000001 112357888999999998854 6799999999999988666653333       3


Q ss_pred             eCCEEEecCCC
Q psy2240         170 TGDVGIAKDGS  180 (182)
Q Consensus       170 ~~~~vi~adG~  180 (182)
                      ..++||+|||.
T Consensus       153 ~~~~vIgADG~  163 (388)
T PRK07045        153 APTVLVGADGA  163 (388)
T ss_pred             ECCEEEECCCC
Confidence            46999999997

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.68  E-value=4.7e-16  Score=116.77  Aligned_cols=143  Identities=22%  Similarity=0.217  Sum_probs=81.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      .+++||+||||||+|+++|+.|++      .|++|+||||.+...  ..+++.+....+ +.++.+....   ...+.  
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~LA~------~G~~VlllEr~~~~~--k~cgg~i~~~~l-~~lgl~~~~~---~~~i~--  102 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETLAK------GGIETFLIERKLDNA--KPCGGAIPLCMV-GEFDLPLDII---DRKVT--  102 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCCCC--CCccccccHhHH-hhhcCcHHHH---HHHhh--
Confidence            356899999999999999999999      899999999985321  224444433222 1122111100   00000  


Q ss_pred             hHHHHHhh-ccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC---CCcEEE--------
Q psy2240         100 KFAYLTKS-KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG---DGSVKG--------  167 (182)
Q Consensus       100 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~---~g~~~~--------  167 (182)
                      .+.++... ....+..  . .........++|..|.+.|.+.+.+.|++++.+ .++++....   +...+.        
T Consensus       103 ~~~~~~p~~~~v~~~~--~-~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~  178 (450)
T PLN00093        103 KMKMISPSNVAVDIGK--T-LKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGS  178 (450)
T ss_pred             hheEecCCceEEEecc--c-CCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccc
Confidence            00000000 0000100  0 000011235899999999999999999999875 577775321   122221        


Q ss_pred             ------EEeCCEEEecCCC
Q psy2240         168 ------IATGDVGIAKDGS  180 (182)
Q Consensus       168 ------v~~~~~vi~adG~  180 (182)
                            ....++||+|||+
T Consensus       179 ~~g~~~~v~a~~VIgADG~  197 (450)
T PLN00093        179 GAGTPKTLEVDAVIGADGA  197 (450)
T ss_pred             cCCCccEEEeCEEEEcCCc
Confidence                  2356999999996

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.68  E-value=3.1e-16  Score=116.44  Aligned_cols=150  Identities=22%  Similarity=0.236  Sum_probs=88.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc---cc--cccccChh--HHhhhhhhHHhcCCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH---IL--SGAVIDPI--ALNELLPDWKDLGAPLN   93 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~---~~--~~~~~~~~--~~~~~~~~~~~~~~~~~   93 (182)
                      ..+||+||||||+|+++|+.|++      .|++|+|||+.+...-.   ..  ....+.+.  .+.+.++.|........
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~------~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~   77 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQ------HGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRS   77 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhc------CCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhC
Confidence            45899999999999999999999      89999999998632210   00  00112222  23344455543321100


Q ss_pred             ccchh-hhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEE----
Q psy2240          94 TPVHE-DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKG----  167 (182)
Q Consensus        94 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~----  167 (182)
                      .+... ..+.+  ......+.. .... ....++.+++..+.+.|.+.+.+. |++++++++|+++..++++..+.    
T Consensus        78 ~~~~~~~~~~~--~~~~~~~~~-~~~~-~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g  153 (391)
T PRK08020         78 HPYRRLETWEW--ETAHVVFDA-AELK-LPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADG  153 (391)
T ss_pred             cccceEEEEeC--CCCeEEecc-cccC-CCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCC
Confidence            00000 00000  000000000 0000 112256789999999999998775 89999999999998655543332    


Q ss_pred             -EEeCCEEEecCCC
Q psy2240         168 -IATGDVGIAKDGS  180 (182)
Q Consensus       168 -v~~~~~vi~adG~  180 (182)
                       ....++||+|||.
T Consensus       154 ~~~~a~~vI~AdG~  167 (391)
T PRK08020        154 EEIQAKLVIGADGA  167 (391)
T ss_pred             CEEEeCEEEEeCCC
Confidence             3456999999997

>PRK06126 hypothetical protein; Provisional

Probab=99.68  E-value=4e-16  Score=120.28  Aligned_cols=153  Identities=22%  Similarity=0.232  Sum_probs=87.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhc---CCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDL---GAPLNTP   95 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~   95 (182)
                      .++||+||||||+|+++|+.|++      +|++|+||||.+...... .+..+.+..  +.+.++.+...   +......
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~------~G~~v~viEr~~~~~~~~-ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~   78 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGR------RGVDSILVERKDGTAFNP-KANTTSARSMEHFRRLGIADEVRSAGLPVDYP   78 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCCCCCCCC-ccccCCHHHHHHHHhcChHHHHHhhcCCcccc
Confidence            45799999999999999999999      899999999987543211 122233332  22333333321   2111000


Q ss_pred             ----c----hhhhHHHHHhhccCC-CCCC--CCCC-CCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCC
Q psy2240          96 ----V----HEDKFAYLTKSKRIG-IPIL--PGMP-MNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGD  162 (182)
Q Consensus        96 ----~----~~~~~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~  162 (182)
                          .    ....+..+....... ....  .... ......+.+++..+.+.|.+.+++ .+++|+++++|++++.+++
T Consensus        79 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~  158 (545)
T PRK06126         79 TDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD  158 (545)
T ss_pred             CCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCC
Confidence                0    000000000000000 0000  0000 011124568888999999999876 5899999999999987655


Q ss_pred             CcEEE----------EEeCCEEEecCCC
Q psy2240         163 GSVKG----------IATGDVGIAKDGS  180 (182)
Q Consensus       163 g~~~~----------v~~~~~vi~adG~  180 (182)
                      +..+.          ....++||+|||+
T Consensus       159 ~v~v~~~~~~~g~~~~i~ad~vVgADG~  186 (545)
T PRK06126        159 GVTATVEDLDGGESLTIRADYLVGCDGA  186 (545)
T ss_pred             eEEEEEEECCCCcEEEEEEEEEEecCCc
Confidence            43322          2345899999997

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.68  E-value=1.4e-16  Score=117.85  Aligned_cols=146  Identities=21%  Similarity=0.265  Sum_probs=87.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCCCCCcc---ccccccChh--HHhhhhhhHHhcCCCCCccch
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAEVGGHI---LSGAVIDPI--ALNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~~~g~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   97 (182)
                      ||+||||||+|+++|+.|++      +| ++|+|+||.+......   ..+..+.+.  ...+.++.+...... .....
T Consensus         1 dv~IvGaG~aGl~~A~~L~~------~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~-~~~~~   73 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSR------LGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPF-ATPIL   73 (382)
T ss_pred             CEEEECccHHHHHHHHHHhc------CCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhh-cCccc
Confidence            79999999999999999999      89 9999999997653211   111223332  223333433332100 00000


Q ss_pred             hhhHHHHHhh--ccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEE-----EE
Q psy2240          98 EDKFAYLTKS--KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKG-----IA  169 (182)
Q Consensus        98 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~-----v~  169 (182)
                      ...  .....  ....+.. ..+. .....+.+++..|.+.|.+.+.+ .|++++++++|++++.++++..+.     ..
T Consensus        74 ~~~--~~~~~~~~~~~~~~-~~~~-~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~  149 (382)
T TIGR01984        74 DIH--VSDQGHFGATHLRA-SEFG-LPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQL  149 (382)
T ss_pred             eEE--EEcCCCCceEEech-hhcC-CCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEE
Confidence            000  00000  0000000 0000 11125678999999999999988 599999999999998755543332     24


Q ss_pred             eCCEEEecCCC
Q psy2240         170 TGDVGIAKDGS  180 (182)
Q Consensus       170 ~~~~vi~adG~  180 (182)
                      ..++||+|||.
T Consensus       150 ~ad~vV~AdG~  160 (382)
T TIGR01984       150 RAKLLIAADGA  160 (382)
T ss_pred             EeeEEEEecCC
Confidence            56999999996

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.68  E-value=3.7e-16  Score=120.26  Aligned_cols=151  Identities=19%  Similarity=0.159  Sum_probs=89.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhcCCCCCccch
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   97 (182)
                      +..+||+||||||+|+++|+.|++      .|++|+||||.+....... +..+.+..  +.+.++.+....... ... 
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~------~G~~v~v~Er~~~~~~~~r-a~~l~~~~~~~L~~lGl~~~l~~~~-~~~-   78 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQ------YGVRVLVLERWPTLYDLPR-AVGIDDEALRVLQAIGLADEVLPHT-TPN-   78 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCCCCc-eeeeCHHHHHHHHHcCChhHHHhhc-ccC-
Confidence            456899999999999999999999      8999999999986543222 22233222  222233332211000 000 


Q ss_pred             hhhHHHHHhhcc--CCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEE------
Q psy2240          98 EDKFAYLTKSKR--IGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGI------  168 (182)
Q Consensus        98 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v------  168 (182)
                       ..+.++.....  ..++.........+..+.+++..+.+.|.+.+.+ .|++|+++++|++++.++++..+.+      
T Consensus        79 -~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~  157 (538)
T PRK06183         79 -HGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQ  157 (538)
T ss_pred             -CceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCC
Confidence             00001000000  0011000000001123567888999999998877 4899999999999988666543322      


Q ss_pred             ---EeCCEEEecCCC
Q psy2240         169 ---ATGDVGIAKDGS  180 (182)
Q Consensus       169 ---~~~~~vi~adG~  180 (182)
                         ...++||+|||+
T Consensus       158 ~~~i~ad~vVgADG~  172 (538)
T PRK06183        158 RETVRARYVVGCDGA  172 (538)
T ss_pred             EEEEEEEEEEecCCC
Confidence               345899999997

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.68  E-value=3e-15  Score=113.22  Aligned_cols=38  Identities=26%  Similarity=0.239  Sum_probs=33.4

Q ss_pred             CCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE
Q psy2240         122 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY  159 (182)
Q Consensus       122 ~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~  159 (182)
                      .+....+++..+.+.|.+.+++.|++|+++++|++++.
T Consensus       174 ~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~  211 (460)
T TIGR03329       174 SPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE  211 (460)
T ss_pred             eCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee
Confidence            34456889999999999999999999999999999874

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.68  E-value=3.1e-16  Score=116.32  Aligned_cols=150  Identities=20%  Similarity=0.260  Sum_probs=87.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccC--hhHHhhhhhhHHhcCCCCCccch
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID--PIALNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   97 (182)
                      +..+||+|||||++|+++|+.|++      .|++|+|||+.+.... .... .+.  ...+.+.++.|...... ..+..
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~------~G~~v~liE~~~~~~~-~r~~-~l~~~s~~~l~~lgl~~~~~~~-~~~~~   75 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALAR------AGASVALVAPEPPYAD-LRTT-ALLGPSIRFLERLGLWARLAPH-AAPLQ   75 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhc------CCCeEEEEeCCCCCCC-cchh-hCcHHHHHHHHHhCchhhhHhh-cceee
Confidence            345799999999999999999999      8999999999875431 1111 121  12233444545433111 00000


Q ss_pred             hhhHHHHHhhccC-CC--CCCCCCC-CCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----E
Q psy2240          98 EDKFAYLTKSKRI-GI--PILPGMP-MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----I  168 (182)
Q Consensus        98 ~~~~~~~~~~~~~-~~--~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v  168 (182)
                      .  +.++...... ..  ..+.... .....++.+++..+.+.|.+.+.+.+...+++++|++++.++++..+.     .
T Consensus        76 ~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~  153 (388)
T PRK07494         76 S--MRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTT  153 (388)
T ss_pred             E--EEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCE
Confidence            0  0000000000 00  0000000 011225678999999999999987653338899999998755554332     2


Q ss_pred             EeCCEEEecCCC
Q psy2240         169 ATGDVGIAKDGS  180 (182)
Q Consensus       169 ~~~~~vi~adG~  180 (182)
                      ...++||+|||+
T Consensus       154 ~~a~~vI~AdG~  165 (388)
T PRK07494        154 LSARLVVGADGR  165 (388)
T ss_pred             EEEeEEEEecCC
Confidence            456999999997

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.68  E-value=8.2e-16  Score=114.00  Aligned_cols=137  Identities=28%  Similarity=0.409  Sum_probs=81.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC-CCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA-AEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      |||+||||||+|+++|+.|++      .|++|+|||+. +..   ..+++.+.+..+ +.++.+.....   .....  .
T Consensus         1 yDVvIVGaGpAG~~aA~~La~------~G~~V~l~E~~~~~~---~~cg~~i~~~~l-~~l~i~~~~~~---~~~~~--~   65 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLAR------AGIETILLERALSNI---KPCGGAIPPCLI-EEFDIPDSLID---RRVTQ--M   65 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHh------CCCcEEEEECCCCCc---CcCcCCcCHhhh-hhcCCchHHHh---hhcce--e
Confidence            699999999999999999999      89999999998 221   124444433322 12211111000   00000  0


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCcc--ccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------------
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNY--VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------------  167 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------------  167 (182)
                      ....... ...  ....+.  ...+  .++|..|.++|.+.+.+.|++++.. +|+++..++++..+.            
T Consensus        66 ~~~~~~~-~~~--~~~~~~--~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~  139 (388)
T TIGR02023        66 RMISPSR-VPI--KVTIPS--EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEK  139 (388)
T ss_pred             EEEcCCC-cee--eeccCC--CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcc
Confidence            0000000 000  000010  1122  5899999999999999999999765 688887655443222            


Q ss_pred             -EEeCCEEEecCCC
Q psy2240         168 -IATGDVGIAKDGS  180 (182)
Q Consensus       168 -v~~~~~vi~adG~  180 (182)
                       ....++||+|||.
T Consensus       140 ~~i~a~~VI~AdG~  153 (388)
T TIGR02023       140 GSVEADVVIGADGA  153 (388)
T ss_pred             eEEEeCEEEECCCC
Confidence             2356999999996

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.67  E-value=6.9e-16  Score=118.98  Aligned_cols=152  Identities=21%  Similarity=0.219  Sum_probs=88.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhcCCCCCccch
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   97 (182)
                      +.++||+||||||+|+++|+.|++      .|++|+||||.+...... .+..+.+..  +.+.++.+......-. ...
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~------~G~~v~viE~~~~~~~~~-ra~~l~~~~~~~l~~lGl~~~l~~~~~-~~~   92 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQ------QGVPVVLLDDDDTLSTGS-RAICFAKRSLEIFDRLGCGERMVDKGV-SWN   92 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh------CCCcEEEEeCCCCCCCCC-eEEEEcHHHHHHHHHcCCcHHHHhhCc-eee
Confidence            466899999999999999999999      899999999997543211 122233222  2223333322110000 000


Q ss_pred             hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEE--------E
Q psy2240          98 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKG--------I  168 (182)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~--------v  168 (182)
                      ... .+........+..........+....+++..+.+.|.+.+.+. ++++++++++++++.++++..+.        .
T Consensus        93 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~  171 (547)
T PRK08132         93 VGK-VFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYT  171 (547)
T ss_pred             cee-EEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEE
Confidence            000 0000000000110000000111134578889999999998774 69999999999998766554332        2


Q ss_pred             EeCCEEEecCCC
Q psy2240         169 ATGDVGIAKDGS  180 (182)
Q Consensus       169 ~~~~~vi~adG~  180 (182)
                      ...++||+|||+
T Consensus       172 i~ad~vVgADG~  183 (547)
T PRK08132        172 LEADWVIACDGA  183 (547)
T ss_pred             EEeCEEEECCCC
Confidence            356999999996

>PRK07588 hypothetical protein; Provisional

Probab=99.67  E-value=5.3e-16  Score=115.20  Aligned_cols=145  Identities=17%  Similarity=0.108  Sum_probs=83.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccC--hhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID--PIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      ||+|||||++|+++|+.|++      .|++|+||||.+..... ..+..+.  ...+.+.++.|...... .....  .+
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~~-g~~~~l~~~~~~~l~~lGl~~~l~~~-~~~~~--~~   71 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRR------YGHEPTLIERAPELRTG-GYMVDFWGVGYEVAKRMGITDQLREA-GYQIE--HV   71 (391)
T ss_pred             eEEEECccHHHHHHHHHHHH------CCCceEEEeCCCCccCC-CeEEeccCcHHHHHHHcCCHHHHHhc-cCCcc--ce
Confidence            79999999999999999999      89999999998754311 1111111  12233334444332110 00000  00


Q ss_pred             HHHHhhcc--CCCCCCCCCC-CCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCE
Q psy2240         102 AYLTKSKR--IGIPILPGMP-MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDV  173 (182)
Q Consensus       102 ~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~  173 (182)
                      .++...+.  ..++. ..+. ......+.+++..|.+.|.+.+. .+++|+++++|++++.++++..+.     ....++
T Consensus        72 ~~~~~~g~~~~~~~~-~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~  149 (391)
T PRK07588         72 RSVDPTGRRKADLNV-DSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDL  149 (391)
T ss_pred             EEEcCCCCEEEEecH-HHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCE
Confidence            00000000  00000 0000 01112357889999999988764 379999999999998755543331     234699


Q ss_pred             EEecCCC
Q psy2240         174 GIAKDGS  180 (182)
Q Consensus       174 vi~adG~  180 (182)
                      ||+|||.
T Consensus       150 vIgADG~  156 (391)
T PRK07588        150 VIGADGL  156 (391)
T ss_pred             EEECCCC
Confidence            9999996

>PRK06847 hypothetical protein; Provisional

Probab=99.67  E-value=9.1e-16  Score=113.33  Aligned_cols=147  Identities=22%  Similarity=0.250  Sum_probs=86.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhc---CCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDL---GAPLNTP   95 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~   95 (182)
                      ...||+|||||++|+++|+.|++      .|++|+|+|+.+..... ..+-.+.+..  ..+.++.+...   .......
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~------~g~~v~v~E~~~~~~~~-g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~   75 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRR------AGIAVDLVEIDPEWRVY-GAGITLQGNALRALRELGVLDECLEAGFGFDGV   75 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHh------CCCCEEEEecCCCCccC-CceeeecHHHHHHHHHcCCHHHHHHhCCCccce
Confidence            35689999999999999999999      89999999998754321 1122222222  12222222211   1111000


Q ss_pred             chhhhHHHHHhhccC--CCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----E
Q psy2240          96 VHEDKFAYLTKSKRI--GIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----I  168 (182)
Q Consensus        96 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v  168 (182)
                            .++...+..  ..+.........+....+++..+.+.|.+.+++.|++++++++|++++.++++..+.     .
T Consensus        76 ------~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~  149 (375)
T PRK06847         76 ------DLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTT  149 (375)
T ss_pred             ------EEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCE
Confidence                  000000000  000000000001224567889999999999988899999999999998654432221     2


Q ss_pred             EeCCEEEecCCC
Q psy2240         169 ATGDVGIAKDGS  180 (182)
Q Consensus       169 ~~~~~vi~adG~  180 (182)
                      ...++||+|||.
T Consensus       150 ~~ad~vI~AdG~  161 (375)
T PRK06847        150 GRYDLVVGADGL  161 (375)
T ss_pred             EEcCEEEECcCC
Confidence            346899999996

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.67  E-value=9.9e-16  Score=113.62  Aligned_cols=149  Identities=22%  Similarity=0.258  Sum_probs=86.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc--cccc--cccChh--HHhhhhhhHHhcCCCCCc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH--ILSG--AVIDPI--ALNELLPDWKDLGAPLNT   94 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~--~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~   94 (182)
                      +.+||+|||||++|+++|+.|++      .|++|+|+||.+.....  ....  ..+.+.  .+.+.++.|.........
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~   77 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQ------SGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLA   77 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHh------CCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCC
Confidence            45799999999999999999999      89999999999765321  1010  112222  222233333322100000


Q ss_pred             cchhhhHHHHHh-hccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC-cEEecCCccceeEEcCCCcEEE-----
Q psy2240          95 PVHEDKFAYLTK-SKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKG-----  167 (182)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~~~~~g~~~~-----  167 (182)
                      .....  ..... .....+....  ...+...+.+++..+.+.|.+.+++.+ ++++ +++|++++.++++..+.     
T Consensus        78 ~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~  152 (388)
T PRK07608         78 PVYDM--RVFGDAHARLHFSAYQ--AGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQ  152 (388)
T ss_pred             cceEE--EEEECCCceeEeeccc--cCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCC
Confidence            00000  00000 0000000000  011122467889999999999998877 9998 89999997655543332     


Q ss_pred             EEeCCEEEecCCC
Q psy2240         168 IATGDVGIAKDGS  180 (182)
Q Consensus       168 v~~~~~vi~adG~  180 (182)
                      ....+++|+|||.
T Consensus       153 ~~~a~~vI~adG~  165 (388)
T PRK07608        153 VLRADLVVGADGA  165 (388)
T ss_pred             EEEeeEEEEeCCC
Confidence            2446899999997

>PRK11445 putative oxidoreductase; Provisional

Probab=99.66  E-value=2.2e-15  Score=110.27  Aligned_cols=141  Identities=24%  Similarity=0.248  Sum_probs=84.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC--C-ccccccccChhHHh--hhhhhHHhcCCCCCccch
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG--G-HILSGAVIDPIALN--ELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~--g-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   97 (182)
                      +||+||||||+|+++|+.|++      . ++|+||||.+...  + ...+++.+.+....  +.++.+.... ....   
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~------~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~-~~~~---   70 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAG------K-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKD-VIAN---   70 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhc------c-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcc-eeec---
Confidence            699999999999999999999      8 9999999987543  1 11244445444331  2222221000 0000   


Q ss_pred             hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE--------EE
Q psy2240          98 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--------IA  169 (182)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~--------v~  169 (182)
                      .....  ...  ...... ....+....+.++|..|.+.|.+.+ +.++++++++.+++++.++++..+.        ..
T Consensus        71 ~~~~~--~~~--~~~~~~-~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i  144 (351)
T PRK11445         71 PQIFA--VKT--IDLANS-LTRNYQRSYINIDRHKFDLWLKSLI-PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHI  144 (351)
T ss_pred             cccce--eeE--eccccc-chhhcCCCcccccHHHHHHHHHHHH-hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEE
Confidence            00000  000  000000 0001111234699999999998854 5689999999999998755554332        23


Q ss_pred             eCCEEEecCCC
Q psy2240         170 TGDVGIAKDGS  180 (182)
Q Consensus       170 ~~~~vi~adG~  180 (182)
                      ..++||+|||.
T Consensus       145 ~a~~vV~AdG~  155 (351)
T PRK11445        145 TARYLVGADGA  155 (351)
T ss_pred             EeCEEEECCCC
Confidence            46999999997

>PRK07538 hypothetical protein; Provisional

Probab=99.66  E-value=4e-15  Score=111.23  Aligned_cols=144  Identities=24%  Similarity=0.248  Sum_probs=85.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhc---CCCCCccchh
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDL---GAPLNTPVHE   98 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~   98 (182)
                      ||+||||||+|+++|+.|++      .|++|+|+||.+.... ...+-.+.+..  ..+.++.+...   .......   
T Consensus         2 dV~IVGaG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~-~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~---   71 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQ------RGIEVVVFEAAPELRP-LGVGINLLPHAVRELAELGLLDALDAIGIRTREL---   71 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHh------CCCcEEEEEcCCcccc-cCcceeeCchHHHHHHHCCCHHHHHhhCCCCcce---
Confidence            79999999999999999999      8999999999876541 11222222222  22233333321   1111100   


Q ss_pred             hhHHHHHhhccCCCCC-CCCCCCCCCCccccchHHHHHHHHHHHHH-cC-cEEecCCccceeEEcCCCcEEE--------
Q psy2240          99 DKFAYLTKSKRIGIPI-LPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MG-VEIYPGIPASEVLYHGDGSVKG--------  167 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~g-v~i~~~~~v~~i~~~~~g~~~~--------  167 (182)
                         .++...+..-... ......+....+.++|..|.+.|.+.+.+ .| ..|+++++|++++.++++.++.        
T Consensus        72 ---~~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~  148 (413)
T PRK07538         72 ---AYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGD  148 (413)
T ss_pred             ---EEEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCc
Confidence               0000000000000 00000111224568999999999999866 46 5799999999998766664443        


Q ss_pred             --EEeCCEEEecCCC
Q psy2240         168 --IATGDVGIAKDGS  180 (182)
Q Consensus       168 --v~~~~~vi~adG~  180 (182)
                        ....|+||+|||.
T Consensus       149 ~~~~~adlvIgADG~  163 (413)
T PRK07538        149 LVSVRGDVLIGADGI  163 (413)
T ss_pred             cceEEeeEEEECCCC
Confidence              2346999999996

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.66  E-value=7.2e-16  Score=114.67  Aligned_cols=150  Identities=27%  Similarity=0.281  Sum_probs=86.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh--HHhhhhhhHHhcCCCCCccchh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVHE   98 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   98 (182)
                      +..||+||||||+|+++|+.|++      .|++|+|+||.+..+.. ..+-.+.+.  .+.+.++.+...... ....  
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~------~g~~v~v~Er~~~~~~~-g~gi~l~~~~~~~l~~lg~~~~~~~~-~~~~--   72 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALAR------QGIKVKLLEQAAEIGEI-GAGIQLGPNAFSALDALGVGEAARQR-AVFT--   72 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHh------CCCcEEEEeeCcccccc-cceeeeCchHHHHHHHcCChHHHHhh-ccCC--
Confidence            35699999999999999999999      89999999999765421 122222222  222333333221100 0000  


Q ss_pred             hhHHHHHh-hcc-C-CCCCCCCCC-CCCCCccccchHHHHHHHHHHHHHcC-cEEecCCccceeEEcCCCcEEE-----E
Q psy2240          99 DKFAYLTK-SKR-I-GIPILPGMP-MNNHGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDGSVKG-----I  168 (182)
Q Consensus        99 ~~~~~~~~-~~~-~-~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~~~~~g~~~~-----v  168 (182)
                      ..+.++.. ... . ..+...... .+......+++..+.+.|.+.+.+.+ ++++++++++++..++++..+.     .
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~  152 (396)
T PRK08163         73 DHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNR  152 (396)
T ss_pred             cceEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCE
Confidence            00000000 000 0 000000000 01111346899999999999997764 9999999999998655443321     2


Q ss_pred             EeCCEEEecCCC
Q psy2240         169 ATGDVGIAKDGS  180 (182)
Q Consensus       169 ~~~~~vi~adG~  180 (182)
                      ...++||+|||.
T Consensus       153 ~~ad~vV~AdG~  164 (396)
T PRK08163        153 WTGDALIGCDGV  164 (396)
T ss_pred             EecCEEEECCCc
Confidence            456999999996

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.66  E-value=5.4e-15  Score=108.71  Aligned_cols=156  Identities=28%  Similarity=0.346  Sum_probs=89.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc--ccccc------ChhHHh---------hhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL--SGAVI------DPIALN---------ELLP   83 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~--~~~~~------~~~~~~---------~~~~   83 (182)
                      .++||+|||||+.|+++|++|+++.    +.++|+||||...++..++  +.+..      .+..+.         ..+.
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~----p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~   77 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYE----PDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFA   77 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhC----CCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHH
Confidence            5689999999999999999999931    3399999999987764332  11111      111110         0011


Q ss_pred             hHHhcCCCCCcc------chhhh---HHHH----HhhccCCCCCC---------CC------CCCCCCCccccchHHHHH
Q psy2240          84 DWKDLGAPLNTP------VHEDK---FAYL----TKSKRIGIPIL---------PG------MPMNNHGNYVVRLGHVVK  135 (182)
Q Consensus        84 ~~~~~~~~~~~~------~~~~~---~~~~----~~~~~~~~~~~---------~~------~~~~~~~~~~~~~~~l~~  135 (182)
                      .-+....++...      ...+.   +..+    ..+.......+         +.      ...+.+.+..+++..+..
T Consensus        78 ~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~  157 (429)
T COG0579          78 ICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTR  157 (429)
T ss_pred             HHHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHH
Confidence            111111111110      01111   1111    11111111111         10      113445577899999999


Q ss_pred             HHHHHHHHcCcEEecCCccceeEEcCCC-cEEE-----E-EeCCEEEecCCC
Q psy2240         136 WLGEQAEAMGVEIYPGIPASEVLYHGDG-SVKG-----I-ATGDVGIAKDGS  180 (182)
Q Consensus       136 ~l~~~~~~~gv~i~~~~~v~~i~~~~~g-~~~~-----v-~~~~~vi~adG~  180 (182)
                      .|.+.++++|++++++++|++|++.++| .++.     . ..++.||.|.|.
T Consensus       158 ~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl  209 (429)
T COG0579         158 ALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGL  209 (429)
T ss_pred             HHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCch
Confidence            9999999999999999999999997775 2221     1 345566655553

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.66  E-value=1.3e-15  Score=113.34  Aligned_cols=148  Identities=22%  Similarity=0.235  Sum_probs=86.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh--HHhhhhhhHHhcCCCCCccchhhh
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      -+|+||||||+|+++|+.|++      +|++|+|+||.+.... ...+-.+.+.  .+.+.++.|..........   ..
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~------~G~~V~i~E~~~~~~~-~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~---~~   72 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAA------RGWAVTIIEKAQELSE-VGAGLQLAPNAMRHLERLGVADRLSGTGVTP---KA   72 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCccCc-CCccceeChhHHHHHHHCCChHHHhhcccCc---ce
Confidence            479999999999999999999      8999999999875432 1122222232  2333344444321110000   00


Q ss_pred             HHHHHhhc---cCCCCCCCCC-CCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEE--------
Q psy2240         101 FAYLTKSK---RIGIPILPGM-PMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKG--------  167 (182)
Q Consensus       101 ~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~--------  167 (182)
                      +.+.....   .......... ..+......++|..|.+.|.+.+.+ .+++++++++|++++.++++..+.        
T Consensus        73 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~  152 (400)
T PRK06475         73 LYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVE  152 (400)
T ss_pred             EEEecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCc
Confidence            00000000   0000000000 0011123468999999999999876 479999999999998755443222        


Q ss_pred             EEeCCEEEecCCC
Q psy2240         168 IATGDVGIAKDGS  180 (182)
Q Consensus       168 v~~~~~vi~adG~  180 (182)
                      ....|+||+|||.
T Consensus       153 ~~~adlvIgADG~  165 (400)
T PRK06475        153 TVSAAYLIACDGV  165 (400)
T ss_pred             EEecCEEEECCCc
Confidence            2346999999997

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.65  E-value=4.1e-16  Score=115.79  Aligned_cols=145  Identities=18%  Similarity=0.127  Sum_probs=84.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC--CCccccccccChh--HHhhhhhhHHhcCCCCCccch
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV--GGHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~--~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   97 (182)
                      .+||+||||||+|+++|+.|++      .|++|+|+||.+..  .+... ++.+.+.  .+.+.++.++..... .....
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~------~G~~v~v~E~~~~~~~~~~~~-a~~l~~~~~~~l~~lGl~~~l~~~-~~~~~   73 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHL------AGIDSVVLERRSREYVEGRIR-AGVLEQGTVDLLREAGVGERMDRE-GLVHD   73 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHh------cCCCEEEEEcCCccccccccc-eeEECHhHHHHHHHcCChHHHHhc-CCccC
Confidence            4799999999999999999999      89999999999753  11111 2223332  233334444332110 00000


Q ss_pred             hhhHHHHHhh--ccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE-cCCCcEEE-------
Q psy2240          98 EDKFAYLTKS--KRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY-HGDGSVKG-------  167 (182)
Q Consensus        98 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~-~~~g~~~~-------  167 (182)
                      .  +.+....  ...++...   . .......+++..+.+.|.+.+.+.|+++++++++++++. ++++..+.       
T Consensus        74 ~--~~~~~~g~~~~~~~~~~---~-~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~  147 (392)
T PRK08243         74 G--IELRFDGRRHRIDLTEL---T-GGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEE  147 (392)
T ss_pred             c--EEEEECCEEEEeccccc---c-CCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeE
Confidence            0  0000000  01111110   0 011123456778888898888888999999999999875 33332222       


Q ss_pred             -EEeCCEEEecCCC
Q psy2240         168 -IATGDVGIAKDGS  180 (182)
Q Consensus       168 -v~~~~~vi~adG~  180 (182)
                       ....++||+|||.
T Consensus       148 ~~i~ad~vVgADG~  161 (392)
T PRK08243        148 HRLDCDFIAGCDGF  161 (392)
T ss_pred             EEEEeCEEEECCCC
Confidence             2345899999997

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.65  E-value=3.1e-15  Score=109.55  Aligned_cols=150  Identities=28%  Similarity=0.430  Sum_probs=85.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccChh-----------HHhhhhhhHHhc---
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDPI-----------ALNELLPDWKDL---   88 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~~-----------~~~~~~~~~~~~---   88 (182)
                      ||+|||||++|+++|++|++      +|.+|+|||+....++.+. +.+.+.+.           .....+..|+..   
T Consensus         1 DvvIIGaGi~G~~~A~~La~------~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   74 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELAR------RGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEE   74 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHH------TTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHH------CCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhh
Confidence            79999999999999999999      8999999999955444442 22222111           111222233322   


Q ss_pred             -CCCCC--c--c---c-hhhhHHHH------HhhccCC------------CCCCCC---CCCCCCCccccchHHHHHHHH
Q psy2240          89 -GAPLN--T--P---V-HEDKFAYL------TKSKRIG------------IPILPG---MPMNNHGNYVVRLGHVVKWLG  138 (182)
Q Consensus        89 -~~~~~--~--~---~-~~~~~~~~------~~~~~~~------------~~~~~~---~~~~~~~~~~~~~~~l~~~l~  138 (182)
                       .....  .  .   . .......+      .......            .+....   ...+.+....+++..+.+.|.
T Consensus        75 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~  154 (358)
T PF01266_consen   75 YGIPVGFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALA  154 (358)
T ss_dssp             TTSSCEEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHH
T ss_pred             cCcccccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhH
Confidence             21111  0  0   0 11111110      0111111            111110   011234466789999999999


Q ss_pred             HHHHHcCcEEecCCccceeEEcCCCcEEEEEe------CCEEEecCCC
Q psy2240         139 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT------GDVGIAKDGS  180 (182)
Q Consensus       139 ~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~------~~~vi~adG~  180 (182)
                      +.+++.|++|+.+++|++|..++ +.+.+|.+      .+.||.|.|.
T Consensus       155 ~~~~~~Gv~i~~~~~V~~i~~~~-~~v~gv~~~~g~i~ad~vV~a~G~  201 (358)
T PF01266_consen  155 AEAQRAGVEIRTGTEVTSIDVDG-GRVTGVRTSDGEIRADRVVLAAGA  201 (358)
T ss_dssp             HHHHHTT-EEEESEEEEEEEEET-TEEEEEEETTEEEEECEEEE--GG
T ss_pred             HHHHHhhhhccccccccchhhcc-cccccccccccccccceeEecccc
Confidence            99999999999999999998744 44544433      3566666654

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PLN02985 squalene monooxygenase

Probab=99.64  E-value=3.1e-15  Score=113.99  Aligned_cols=150  Identities=20%  Similarity=0.263  Sum_probs=84.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh--HHhhhhhhHHhcCCCCCccch
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   97 (182)
                      +..+||+|||||++|+++|+.|++      .|++|+|+||.+..... ..+..+.+.  ...+.++.|........... 
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~------~G~~V~vlEr~~~~~~~-~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~-  112 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAK------DGRRVHVIERDLREPER-MMGEFMQPGGRFMLSKLGLEDCLEGIDAQKA-  112 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHH------cCCeEEEEECcCCCCcc-ccccccCchHHHHHHHcCCcchhhhccCccc-
Confidence            456899999999999999999999      89999999998643221 122223222  22333444332211100011 


Q ss_pred             hhhHHHHHhhc--cCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEEEE-----
Q psy2240          98 EDKFAYLTKSK--RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIA-----  169 (182)
Q Consensus        98 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~v~-----  169 (182)
                       ..+..+....  ...++...........++.+++..+.+.|.+++.+. +++++++ +++++..+ ++.+.+|.     
T Consensus       113 -~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~~d  189 (514)
T PLN02985        113 -TGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYKNSA  189 (514)
T ss_pred             -ccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEEcCC
Confidence             0000100000  011111000001112246788999999999999775 6888865 57776543 34333322     


Q ss_pred             ------eCCEEEecCCC
Q psy2240         170 ------TGDVGIAKDGS  180 (182)
Q Consensus       170 ------~~~~vi~adG~  180 (182)
                            ..++||+|||.
T Consensus       190 G~~~~~~AdLVVgADG~  206 (514)
T PLN02985        190 GEETTALAPLTVVCDGC  206 (514)
T ss_pred             CCEEEEECCEEEECCCC
Confidence                  35899999997

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.64  E-value=1.7e-15  Score=113.84  Aligned_cols=151  Identities=21%  Similarity=0.215  Sum_probs=85.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc-----------cccccccCh--hHHhhhhhhHHhcC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH-----------ILSGAVIDP--IALNELLPDWKDLG   89 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~-----------~~~~~~~~~--~~~~~~~~~~~~~~   89 (182)
                      +||+||||||+|+++|+.|++.  +...|++|+|||+.+.+...           ...+-.+.+  ..+.+.++.|....
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~--~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~   78 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNN--PLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQ   78 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcC--cccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhh
Confidence            6999999999999999999861  11138999999995422211           001112222  23334445554432


Q ss_pred             CCCCccchhhhHHHHHhhc--cCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC---cEEecCCccceeEEc----
Q psy2240          90 APLNTPVHEDKFAYLTKSK--RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG---VEIYPGIPASEVLYH----  160 (182)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g---v~i~~~~~v~~i~~~----  160 (182)
                      .........  +.++....  ...++..   ......++.+++..+.+.|.+.+.+.+   ++++++++|++++.+    
T Consensus        79 ~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~  153 (437)
T TIGR01989        79 SDRIQPFGR--MQVWDGCSLALIRFDRD---NGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYP  153 (437)
T ss_pred             hhcCCceee--EEEecCCCCceEEeecC---CCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccc
Confidence            111111100  00000000  0111110   001122567899999999999988764   899999999999742    


Q ss_pred             ---CCCcEEE-----EEeCCEEEecCCC
Q psy2240         161 ---GDGSVKG-----IATGDVGIAKDGS  180 (182)
Q Consensus       161 ---~~g~~~~-----v~~~~~vi~adG~  180 (182)
                         +++..+.     ....++||+|||+
T Consensus       154 ~~~~~~v~v~~~~g~~i~a~llVgADG~  181 (437)
T TIGR01989       154 NDNSNWVHITLSDGQVLYTKLLIGADGS  181 (437)
T ss_pred             cCCCCceEEEEcCCCEEEeeEEEEecCC
Confidence               1222221     2346999999997

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.63  E-value=4.3e-14  Score=107.96  Aligned_cols=143  Identities=22%  Similarity=0.329  Sum_probs=82.4

Q ss_pred             ccccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-h-hH----------Hhhhhh
Q psy2240          17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-P-IA----------LNELLP   83 (182)
Q Consensus        17 ~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-~-~~----------~~~~~~   83 (182)
                      ..++.++||||||+|++|+++|+.+++      .|.+|+||||.+..+|.+. +.+.+. . ..          ..+.+.
T Consensus        56 ~~~~~~~DVvVVG~G~AGl~AAi~Aa~------~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~  129 (506)
T PRK06481         56 SELKDKYDIVIVGAGGAGMSAAIEAKD------AGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYE  129 (506)
T ss_pred             ccccccCCEEEECcCHHHHHHHHHHHH------CCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHH
Confidence            344567899999999999999999999      8999999999998877542 222221 1 11          112222


Q ss_pred             hHHhcCCCCCcc--------chhhhHHHHHhhccCCCCCCC---CC--C-CCCCCccccchHHHHHHHHHHHHHcCcEEe
Q psy2240          84 DWKDLGAPLNTP--------VHEDKFAYLTKSKRIGIPILP---GM--P-MNNHGNYVVRLGHVVKWLGEQAEAMGVEIY  149 (182)
Q Consensus        84 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~---~~--~-~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~  149 (182)
                      ++........+.        ...+.+.|+...+ ..+....   ..  + ...+.........+...|.+.+++.|++++
T Consensus       130 ~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~G-v~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~  208 (506)
T PRK06481        130 ETLKGGGGTNDKALLRYFVDNSASAIDWLDSMG-IKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLF  208 (506)
T ss_pred             HHHHhcCCCCCHHHHHHHHhccHHHHHHHHHcC-ceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEE
Confidence            222222111111        1123345554322 1111110   00  0 000001112234678889999989999999


Q ss_pred             cCCccceeEEcCCCcEEE
Q psy2240         150 PGIPASEVLYHGDGSVKG  167 (182)
Q Consensus       150 ~~~~v~~i~~~~~g~~~~  167 (182)
                      ++++|++|.. +++.+++
T Consensus       209 ~~t~v~~l~~-~~g~V~G  225 (506)
T PRK06481        209 VNADVTKITE-KDGKVTG  225 (506)
T ss_pred             eCCeeEEEEe-cCCEEEE
Confidence            9999999986 4455544

>PRK05868 hypothetical protein; Validated

Probab=99.63  E-value=2.7e-15  Score=110.56  Aligned_cols=146  Identities=18%  Similarity=0.117  Sum_probs=82.2

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccCh--hHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDP--IALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      ||+|||||++|+++|+.|++      .|++|+|||+.+..... ..+-.+.+  ..+.+.++.+..... .......  +
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~------~G~~v~viE~~~~~~~~-g~~i~~~~~a~~~L~~lGl~~~~~~-~~~~~~~--~   72 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGR------HGYSVTMVERHPGLRPG-GQAIDVRGPALDVLERMGLLAAAQE-HKTRIRG--A   72 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHh------CCCCEEEEcCCCCCCCC-ceeeeeCchHHHHHHhcCCHHHHHh-hccCccc--e
Confidence            79999999999999999999      89999999999765421 11111222  122333343332210 0000000  0


Q ss_pred             HHHHhhcc-CCCCCC--CCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCE
Q psy2240         102 AYLTKSKR-IGIPIL--PGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDV  173 (182)
Q Consensus       102 ~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~  173 (182)
                      .+...... +.....  ............++|..|.+.|.+.+ ..|++++++++|++++.++++..+.     ....|+
T Consensus        73 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adl  151 (372)
T PRK05868         73 SFVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDL  151 (372)
T ss_pred             EEEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCE
Confidence            00000000 000000  00001111234677888888876654 4589999999999998654443332     234699


Q ss_pred             EEecCCC
Q psy2240         174 GIAKDGS  180 (182)
Q Consensus       174 vi~adG~  180 (182)
                      ||+|||.
T Consensus       152 vIgADG~  158 (372)
T PRK05868        152 VIGADGL  158 (372)
T ss_pred             EEECCCC
Confidence            9999996

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.63  E-value=1.3e-14  Score=113.24  Aligned_cols=152  Identities=16%  Similarity=0.153  Sum_probs=88.7

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCC-CceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhcC---CCC
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGK-ELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDLG---APL   92 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~---~~~   92 (182)
                      |..++||+||||||+||++|+.|++      . |++|+|||+.+..... ..+..+.+..  +.+.++.+....   ...
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar------~~Gi~v~IiE~~~~~~~~-grA~gl~prtleiL~~lGl~d~l~~~g~~~  101 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSA------FPDITTRIVERKPGRLEL-GQADGIACRTMEMFQAFGFAERILKEAYWI  101 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhc------CCCCcEEEEEcCCCCCCC-CeeeEEChHHHHHHHhccchHHHHhhcccc
Confidence            4457899999999999999999999      6 9999999998754321 1222334433  334444444321   111


Q ss_pred             Cc-cchhhh---HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC--cEEecCCccceeEEcCCC---
Q psy2240          93 NT-PVHEDK---FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG--VEIYPGIPASEVLYHGDG---  163 (182)
Q Consensus        93 ~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g--v~i~~~~~v~~i~~~~~g---  163 (182)
                      .. .+....   ...+.....  ...... .........+++..+++.|.+.+.+.+  +.+++++++++++.++++   
T Consensus       102 ~~~~~~~~~~~~~~~i~r~~~--~~~~~~-~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~  178 (634)
T PRK08294        102 NETAFWKPDPADPSTIVRTGR--VQDTED-GLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYP  178 (634)
T ss_pred             cceEEEcCCCccccceecccc--ccccCC-CCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCC
Confidence            10 000000   000000000  000000 011112357889999999999998766  578899999999875432   


Q ss_pred             cEEE-------------EEeCCEEEecCCC
Q psy2240         164 SVKG-------------IATGDVGIAKDGS  180 (182)
Q Consensus       164 ~~~~-------------v~~~~~vi~adG~  180 (182)
                      ..+.             ...+++||+|||+
T Consensus       179 V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa  208 (634)
T PRK08294        179 VTVTLRRTDGEHEGEEETVRAKYVVGCDGA  208 (634)
T ss_pred             EEEEEEECCCCCCCceEEEEeCEEEECCCC
Confidence            2221             3346999999997

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.62  E-value=2.4e-14  Score=106.91  Aligned_cols=155  Identities=21%  Similarity=0.330  Sum_probs=87.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCC-Cc-eEEEEecCCCCCCccc-cccccC--------hhHHhhhhhhHHhc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGK-EL-KVCLVEKAAEVGGHIL-SGAVID--------PIALNELLPDWKDL   88 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~-~v~vlE~~~~~~g~~~-~~~~~~--------~~~~~~~~~~~~~~   88 (182)
                      ...+||+|||||++|+++|++|++      + |. +|+||||.....+.+. +.+.+.        ..........|...
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~------~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l  101 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAK------EHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGL  101 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHH------hcCCCeEEEEEcccccCcccccccceeeecccCccccHHHHHHHHHHHHH
Confidence            356899999999999999999998      5 84 9999999875544432 222211        11111222333322


Q ss_pred             ----CCCC--C--ccc----hhhhHHHH----H--hhccCCCCCCC------CCC---------------CCCCCccccc
Q psy2240          89 ----GAPL--N--TPV----HEDKFAYL----T--KSKRIGIPILP------GMP---------------MNNHGNYVVR  129 (182)
Q Consensus        89 ----~~~~--~--~~~----~~~~~~~~----~--~~~~~~~~~~~------~~~---------------~~~~~~~~~~  129 (182)
                          +...  .  ..+    .......+    .  .....+...+.      ..|               .+.+....++
T Consensus       102 ~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~  181 (407)
T TIGR01373       102 SQDLNYNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTAR  181 (407)
T ss_pred             HHHhCCCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCC
Confidence                1110  0  000    11111111    0  11111111110      011               1122234667


Q ss_pred             hHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE-------EeCCEEEecCCC
Q psy2240         130 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-------ATGDVGIAKDGS  180 (182)
Q Consensus       130 ~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v-------~~~~~vi~adG~  180 (182)
                      +..+...|.+.+++.|++++++++|++++..+++.+.++       .++++||+|+|.
T Consensus       182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~  239 (407)
T TIGR01373       182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGH  239 (407)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChh
Confidence            888888999999999999999999999976444544433       344678888875

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK06753 hypothetical protein; Provisional

Probab=99.62  E-value=3.9e-15  Score=109.93  Aligned_cols=142  Identities=17%  Similarity=0.187  Sum_probs=83.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHHhcCCCCCccchhhhH
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      ||+||||||+|+++|+.|++      .|++|+|+||.+.+... ..+-.+.+..+  .+.++.+...... ....  ..+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~------~g~~v~v~E~~~~~~~~-g~gi~l~~~~~~~L~~~gl~~~~~~~-~~~~--~~~   71 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQE------QGHEVKVFEKNESVKEV-GAGIGIGDNVIKKLGNHDLAKGIKNA-GQIL--STM   71 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCccccc-ccceeeChHHHHHHHhcChHHHHHhc-CCcc--cce
Confidence            79999999999999999999      89999999999865421 12222333322  2222222221100 0000  000


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEe
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIA  176 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~  176 (182)
                      ..+...+.. +.... . ......+.++|..|.+.|.+.+.  +.+|+++++|++++.++++..+.     ....++||+
T Consensus        72 ~~~~~~g~~-~~~~~-~-~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vig  146 (373)
T PRK06753         72 NLLDDKGTL-LNKVK-L-KSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIG  146 (373)
T ss_pred             eEEcCCCCE-Eeecc-c-ccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEE
Confidence            011111100 00000 0 01123567899999999998875  46899999999998755443321     345699999


Q ss_pred             cCCC
Q psy2240         177 KDGS  180 (182)
Q Consensus       177 adG~  180 (182)
                      |||.
T Consensus       147 adG~  150 (373)
T PRK06753        147 ADGI  150 (373)
T ss_pred             CCCc
Confidence            9995

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.62  E-value=2.7e-15  Score=111.58  Aligned_cols=151  Identities=25%  Similarity=0.231  Sum_probs=85.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCC---CceEEEEecCCCCC----CccccccccChh--HHhhhhhhHHhcCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGK---ELKVCLVEKAAEVG----GHILSGAVIDPI--ALNELLPDWKDLGAP   91 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~---g~~v~vlE~~~~~~----g~~~~~~~~~~~--~~~~~~~~~~~~~~~   91 (182)
                      +.+||+||||||+|+++|+.|++      .   |++|+||||.....    +....+..+.+.  ...+.++.|......
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~------~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~   75 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSR------LSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADC   75 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhh------cccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhh
Confidence            45899999999999999999999      7   99999999963221    100112223222  233334444432110


Q ss_pred             CCccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEE---
Q psy2240          92 LNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKG---  167 (182)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~---  167 (182)
                       ........+..........+.. .... .....+.+++..+.+.|.+.+.+ .|++++++++|+++..++++..+.   
T Consensus        76 -~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~  152 (395)
T PRK05732         76 -ATPITHIHVSDRGHAGFVRLDA-EDYG-VPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDD  152 (395)
T ss_pred             -cCCccEEEEecCCCCceEEeeh-hhcC-CCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECC
Confidence             0000000000000000000000 0000 11114567888899999998866 579999999999997655443332   


Q ss_pred             --EEeCCEEEecCCC
Q psy2240         168 --IATGDVGIAKDGS  180 (182)
Q Consensus       168 --v~~~~~vi~adG~  180 (182)
                        ....++||+|||.
T Consensus       153 g~~~~a~~vI~AdG~  167 (395)
T PRK05732        153 GETLTGRLLVAADGS  167 (395)
T ss_pred             CCEEEeCEEEEecCC
Confidence              2456899999996

>PRK07121 hypothetical protein; Validated

Probab=99.61  E-value=1.8e-14  Score=109.86  Aligned_cols=45  Identities=42%  Similarity=0.598  Sum_probs=39.7

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      .++.++||||||+|.+|+++|+++++      .|.+|+||||.+..+|.+.
T Consensus        16 ~~~~~~DVvVVGaG~AGl~AA~~aae------~G~~VillEK~~~~gG~s~   60 (492)
T PRK07121         16 SWDDEADVVVVGFGAAGACAAIEAAA------AGARVLVLERAAGAGGATA   60 (492)
T ss_pred             ccCCccCEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCCCCCCccc
Confidence            34567999999999999999999999      8999999999988777553

>PRK07236 hypothetical protein; Provisional

Probab=99.61  E-value=7.7e-15  Score=108.79  Aligned_cols=142  Identities=19%  Similarity=0.191  Sum_probs=78.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHHhcCCCCCccch
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   97 (182)
                      ++..+|+|||||++|+++|+.|++      .|++|+|+||.+........+-.+.+..+  .+.++.+...  .......
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~--~~~~~~~   75 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRR------AGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA--DIGVPSR   75 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHh------CCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc--ccccCcc
Confidence            345799999999999999999999      89999999998743211111112333222  1222221111  0000000


Q ss_pred             hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCC
Q psy2240          98 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGD  172 (182)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~  172 (182)
                        ...++.....    .+...+.   ....+.+..+.+.|.+.+  .++.++++++|++++.++++..+.     ....+
T Consensus        76 --~~~~~~~~g~----~~~~~~~---~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad  144 (386)
T PRK07236         76 --ERIYLDRDGR----VVQRRPM---PQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETAD  144 (386)
T ss_pred             --ceEEEeCCCC----EeeccCC---CccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeC
Confidence              0000000000    0000000   112235566777776654  357899999999998755543332     33569


Q ss_pred             EEEecCCC
Q psy2240         173 VGIAKDGS  180 (182)
Q Consensus       173 ~vi~adG~  180 (182)
                      +||+|||.
T Consensus       145 ~vIgADG~  152 (386)
T PRK07236        145 LLVGADGG  152 (386)
T ss_pred             EEEECCCC
Confidence            99999996

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.60  E-value=9.8e-16  Score=114.69  Aligned_cols=137  Identities=31%  Similarity=0.338  Sum_probs=37.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHHH
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAY  103 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (182)
                      ||||||||++|+++|+.+++      .|.+|+|||+.+.+||....++........    ...        .........
T Consensus         1 DVVVvGgG~aG~~AAi~AAr------~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~----~~~--------~~~~gi~~e   62 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAAR------AGAKVLLIEKGGFLGGMATSGGVSPFDGNH----DED--------QVIGGIFRE   62 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHH------TTS-EEEE-SSSSSTGGGGGSSS-EETTEE----HHH--------HHHHHHHHH
T ss_pred             CEEEECccHHHHHHHHHHHH------CCCEEEEEECCccCCCcceECCcCChhhcc----hhh--------ccCCCHHHH
Confidence            89999999999999999999      899999999999999876655432111100    000        000000001


Q ss_pred             HHhhccCCCCCCC-CCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe----------CC
Q psy2240         104 LTKSKRIGIPILP-GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT----------GD  172 (182)
Q Consensus       104 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~----------~~  172 (182)
                      +...... ..... ...........+++..+...|.+.+.+.|+++++++.|.++.. +++++.+|..          ++
T Consensus        63 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~  140 (428)
T PF12831_consen   63 FLNRLRA-RGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAK  140 (428)
T ss_dssp             HHHST---------------------------------------------------------------------------
T ss_pred             HHHHHhh-hcccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence            1000000 00000 0000000024566777888888888888999999999999987 4456665443          47


Q ss_pred             EEEecCCC
Q psy2240         173 VGIAKDGS  180 (182)
Q Consensus       173 ~vi~adG~  180 (182)
                      ++|.|.|.
T Consensus       141 ~~IDaTG~  148 (428)
T PF12831_consen  141 VFIDATGD  148 (428)
T ss_dssp             --------
T ss_pred             cccccccc
Confidence            89999885

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.60  E-value=7.7e-14  Score=105.12  Aligned_cols=136  Identities=25%  Similarity=0.383  Sum_probs=79.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCCCCCccc-cccccC---hh---------HHhhhhhhHHhcC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAEVGGHIL-SGAVID---PI---------ALNELLPDWKDLG   89 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~~~g~~~-~~~~~~---~~---------~~~~~~~~~~~~~   89 (182)
                      ||||||+|++|+++|+.+++      +| .+|+||||.+..+|.+. +++.+.   ..         .....+..+....
T Consensus         1 DVvVVG~G~AGl~AA~~aa~------~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   74 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKK------AGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGG   74 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHH------cCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhc
Confidence            89999999999999999999      89 99999999988776653 232221   10         1111222222211


Q ss_pred             CCCCcc--------chhhhHHHHHhhccCCCCC--C--CC---CCC-CCCCccccchHHHHHHHHHHHHHcCcEEecCCc
Q psy2240          90 APLNTP--------VHEDKFAYLTKSKRIGIPI--L--PG---MPM-NNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIP  153 (182)
Q Consensus        90 ~~~~~~--------~~~~~~~~~~~~~~~~~~~--~--~~---~~~-~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~  153 (182)
                      ....+.        .....+.|+.  ....+..  .  ..   .+. ..+.........+.+.|.+.+++.|++|+++++
T Consensus        75 ~~~~~~~l~~~~~~~~~~~i~wl~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~  152 (439)
T TIGR01813        75 RGINDPELVRILAEESADAVDWLQ--DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSK  152 (439)
T ss_pred             CCCCCHHHHHHHHhccHHHHHHHH--hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCE
Confidence            111111        0123344554  1111111  0  00   000 000011234467889999999999999999999


Q ss_pred             cceeEEcCCCcEEE
Q psy2240         154 ASEVLYHGDGSVKG  167 (182)
Q Consensus       154 v~~i~~~~~g~~~~  167 (182)
                      |+++..++++.+++
T Consensus       153 v~~l~~~~~g~v~G  166 (439)
T TIGR01813       153 VEDLIQDDQGTVVG  166 (439)
T ss_pred             eeEeEECCCCcEEE
Confidence            99998866665554

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.60  E-value=4e-14  Score=108.97  Aligned_cols=152  Identities=18%  Similarity=0.194  Sum_probs=86.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccCh-------h--HHh---hhhhhHHh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDP-------I--ALN---ELLPDWKD   87 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~-------~--~~~---~~~~~~~~   87 (182)
                      .++||+|||||++|+++|+.|++      +|++|+||||.....|.+. +.+.+..       .  ...   +....|..
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~------rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~   78 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCAL------RGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKR   78 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHH------cCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999      8999999999865555443 2222111       0  000   00011111


Q ss_pred             cCCC-------CCccchhhhHHH------HHhhccCCCCC------------CCC---CCCCCCCccccchHHHHHHHHH
Q psy2240          88 LGAP-------LNTPVHEDKFAY------LTKSKRIGIPI------------LPG---MPMNNHGNYVVRLGHVVKWLGE  139 (182)
Q Consensus        88 ~~~~-------~~~~~~~~~~~~------~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~l~~~l~~  139 (182)
                      ....       +..........+      .......+...            +..   ...+.+ ...+++..+...+..
T Consensus        79 ~a~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~-dg~vdp~rl~~al~~  157 (546)
T PRK11101         79 IARHCVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVP-DGTVDPFRLTAANML  157 (546)
T ss_pred             hchHhhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEec-CcEECHHHHHHHHHH
Confidence            1000       000011111111      11111111111            100   001112 247899999999999


Q ss_pred             HHHHcCcEEecCCccceeEEcCCCcEEEE------------EeCCEEEecCCC
Q psy2240         140 QAEAMGVEIYPGIPASEVLYHGDGSVKGI------------ATGDVGIAKDGS  180 (182)
Q Consensus       140 ~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------------~~~~~vi~adG~  180 (182)
                      .++++|++++++++|+++..++ +.+.++            +.++.||.|.|.
T Consensus       158 ~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~  209 (546)
T PRK11101        158 DAKEHGAQILTYHEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGI  209 (546)
T ss_pred             HHHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCCh
Confidence            9999999999999999998743 444332            345778888775

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.60  E-value=5.7e-14  Score=108.83  Aligned_cols=142  Identities=18%  Similarity=0.159  Sum_probs=84.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-ccccc-------ChhHHhhhhhhHHhcCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVI-------DPIALNELLPDWKDLGAPL   92 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~   92 (182)
                      .++||+|||+|.+|+++|+.+++      .|.+|+||||....++.+. +.+.+       ........+.+....+..+
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~------~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~   79 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQ------SGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYI   79 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHH------cCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCC
Confidence            46899999999999999999999      8999999999976655432 22222       1122222333333333222


Q ss_pred             Cccc--------hhhhHHHHHhhccCCCCCCCCCCC--CCCCccc----------------cchHHHHHHHHHHHHHcCc
Q psy2240          93 NTPV--------HEDKFAYLTKSKRIGIPILPGMPM--NNHGNYV----------------VRLGHVVKWLGEQAEAMGV  146 (182)
Q Consensus        93 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------------~~~~~l~~~l~~~~~~~gv  146 (182)
                      .++.        ..+.+.|+.. ....+....+...  ...++..                -....+...|.+.+.+.++
T Consensus        80 ~d~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi  158 (588)
T PRK08958         80 GDQDAIEYMCKTGPEAILELEH-MGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHT  158 (588)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-cCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCC
Confidence            2221        2244555543 2222221111000  0000100                1245688889888888899


Q ss_pred             EEecCCccceeEEcCCCcEEEEE
Q psy2240         147 EIYPGIPASEVLYHGDGSVKGIA  169 (182)
Q Consensus       147 ~i~~~~~v~~i~~~~~g~~~~v~  169 (182)
                      ++++++.++++..+++++++|+.
T Consensus       159 ~i~~~~~~~~Li~~~~g~v~Gv~  181 (588)
T PRK08958        159 TIFSEWYALDLVKNQDGAVVGCT  181 (588)
T ss_pred             EEEeCcEEEEEEECCCCEEEEEE
Confidence            99999999999876567777643

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.60  E-value=4.2e-14  Score=105.12  Aligned_cols=153  Identities=22%  Similarity=0.248  Sum_probs=86.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCC--CceEEEEecCCCCCC-ccc-ccccc------ChhH-H----hhhhhhHH
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGK--ELKVCLVEKAAEVGG-HIL-SGAVI------DPIA-L----NELLPDWK   86 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~--g~~v~vlE~~~~~~g-~~~-~~~~~------~~~~-~----~~~~~~~~   86 (182)
                      .+||+|||||++|+++|++|++      +  |.+|+||||.+.++. .+. +.+.+      .+.. .    .+....|.
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~------~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~   75 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQE------RYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATK   75 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHH------hCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999      6  999999999865432 222 22211      1111 0    11122222


Q ss_pred             h----cCCCCCc-----cc-hhhhHHHHH------hhccCCCCCC------------C-CCCCCCCCccccchHHHHHHH
Q psy2240          87 D----LGAPLNT-----PV-HEDKFAYLT------KSKRIGIPIL------------P-GMPMNNHGNYVVRLGHVVKWL  137 (182)
Q Consensus        87 ~----~~~~~~~-----~~-~~~~~~~~~------~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~l~~~l  137 (182)
                      .    .+..+..     .. .......+.      .........+            . ....+.+....+++..+.+.|
T Consensus        76 ~~~~~~~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL  155 (393)
T PRK11728         76 AFCDQHGIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAM  155 (393)
T ss_pred             HHHHHcCCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHH
Confidence            2    1111110     00 111111110      0111111110            0 011233445678899999999


Q ss_pred             HHHHHHcCcEEecCCccceeEEcCCCcEEE----EEeCCEEEecCCC
Q psy2240         138 GEQAEAMGVEIYPGIPASEVLYHGDGSVKG----IATGDVGIAKDGS  180 (182)
Q Consensus       138 ~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----v~~~~~vi~adG~  180 (182)
                      .+.+++.|++++++++|++++.++++..+.    ....+.||.|.|.
T Consensus       156 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~vV~A~G~  202 (393)
T PRK11728        156 AELIQARGGEIRLGAEVTALDEHANGVVVRTTQGEYEARTLINCAGL  202 (393)
T ss_pred             HHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCCEEEeCEEEECCCc
Confidence            999999999999999999997644432221    2345677777775

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.60  E-value=6.3e-14  Score=103.76  Aligned_cols=151  Identities=21%  Similarity=0.215  Sum_probs=83.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC--Cccc-ccccc----C----hhHHhhhhhhHHhc---
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG--GHIL-SGAVI----D----PIALNELLPDWKDL---   88 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~--g~~~-~~~~~----~----~~~~~~~~~~~~~~---   88 (182)
                      +||+|||||++|+++|++|++      +|.+|+|||+.....  +.+. .++.+    .    .....+.+..|...   
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~------~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~   74 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAK------HGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKE   74 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHH
Confidence            599999999999999999999      899999999976532  2121 11111    0    01111222333322   


Q ss_pred             -CCCCCc----c-c--h-hhh----HHHHHhhccCCC------------CCCC--C--CCCCCCCccccchHHHHHHHHH
Q psy2240          89 -GAPLNT----P-V--H-EDK----FAYLTKSKRIGI------------PILP--G--MPMNNHGNYVVRLGHVVKWLGE  139 (182)
Q Consensus        89 -~~~~~~----~-~--~-~~~----~~~~~~~~~~~~------------~~~~--~--~~~~~~~~~~~~~~~l~~~l~~  139 (182)
                       +.....    . +  . ...    ....... ..+.            +.+.  .  ...+.+....+++..+.+.|.+
T Consensus        75 ~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~  153 (380)
T TIGR01377        75 AGTKLHRQTGLLLLGPKENQFLKTIQATLSRH-GLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQE  153 (380)
T ss_pred             hCCeeEeecCeEEEcCCCcHHHHHHHHHHHHc-CCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHH
Confidence             111100    0 0  0 011    1111111 1111            1110  0  0122344567899999999999


Q ss_pred             HHHHcCcEEecCCccceeEEcCCCcEE-----EEEeCCEEEecCCC
Q psy2240         140 QAEAMGVEIYPGIPASEVLYHGDGSVK-----GIATGDVGIAKDGS  180 (182)
Q Consensus       140 ~~~~~gv~i~~~~~v~~i~~~~~g~~~-----~v~~~~~vi~adG~  180 (182)
                      .+++.|++++++++|++++.+++...+     .+.++.+|+++++.
T Consensus       154 ~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~~i~a~~vV~aaG~~  199 (380)
T TIGR01377       154 LAEAHGATVRDGTKVVEIEPTELLVTVKTTKGSYQANKLVVTAGAW  199 (380)
T ss_pred             HHHHcCCEEECCCeEEEEEecCCeEEEEeCCCEEEeCEEEEecCcc
Confidence            999999999999999999864433222     13334566666653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.60  E-value=8.9e-14  Score=106.95  Aligned_cols=142  Identities=26%  Similarity=0.264  Sum_probs=84.4

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCC
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPL   92 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~   92 (182)
                      ++.++||+|||+|++|+++|+.+++      .|.+|+||||.+..+|.+. +.+.+.     .......+.+....+...
T Consensus        13 ~~~~~DVlVIG~G~AGl~AAi~aae------~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~   86 (541)
T PRK07804         13 WRDAADVVVVGSGVAGLTAALAARR------AGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGL   86 (541)
T ss_pred             cccccCEEEECccHHHHHHHHHHHH------cCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCC
Confidence            4667999999999999999999999      8999999999987665443 222211     122223333333332222


Q ss_pred             Cccc--------hhhhHHHHHhhccCCCCCCCCCC--CCCCCc------c----ccchHHHHHHHHHHHHHcCcEEecCC
Q psy2240          93 NTPV--------HEDKFAYLTKSKRIGIPILPGMP--MNNHGN------Y----VVRLGHVVKWLGEQAEAMGVEIYPGI  152 (182)
Q Consensus        93 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~----~~~~~~l~~~l~~~~~~~gv~i~~~~  152 (182)
                      .+..        ..+.+.|+... ...+....+..  ....++      .    ......+.+.|.+.+++.++++++++
T Consensus        87 ~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~  165 (541)
T PRK07804         87 CDPDAVRSLVAEGPRAVRELVAL-GARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHA  165 (541)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHc-CCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECe
Confidence            2211        12334455432 22222111100  000000      0    11345788999999988899999999


Q ss_pred             ccceeEEcCCCcEEE
Q psy2240         153 PASEVLYHGDGSVKG  167 (182)
Q Consensus       153 ~v~~i~~~~~g~~~~  167 (182)
                      .|+++..++++.+.+
T Consensus       166 ~v~~Li~~~~g~v~G  180 (541)
T PRK07804        166 LALDLLTDGTGAVAG  180 (541)
T ss_pred             EeeeeEEcCCCeEEE
Confidence            999998755555554

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.59  E-value=8.9e-14  Score=102.82  Aligned_cols=57  Identities=19%  Similarity=0.205  Sum_probs=41.8

Q ss_pred             CccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE----EEEeCCEEEecCCC
Q psy2240         124 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK----GIATGDVGIAKDGS  180 (182)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~----~v~~~~~vi~adG~  180 (182)
                      ...++++..+...+.+.+.+.|++++++++|+++..++++..+    +....+.||.|.|.
T Consensus       142 ~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~  202 (376)
T PRK11259        142 DGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADGTYEAKKLVVSAGA  202 (376)
T ss_pred             CCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCCEEEeeEEEEecCc
Confidence            3457788899999999998899999999999999874443222    12344667777765

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.59  E-value=6.9e-14  Score=108.88  Aligned_cols=143  Identities=17%  Similarity=0.119  Sum_probs=84.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-------hhHHhhhhhhHHhcCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-------PIALNELLPDWKDLGAP   91 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-------~~~~~~~~~~~~~~~~~   91 (182)
                      +.++||+|||+|.+|+++|+.+++      .|.+|+||||.+..++.+. +.+.+.       .......+.+....+..
T Consensus        27 ~~~~DVlVIG~G~AGl~AAi~Aa~------~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~  100 (617)
T PTZ00139         27 DHTYDAVVVGAGGAGLRAALGLVE------LGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDW  100 (617)
T ss_pred             ccccCEEEECccHHHHHHHHHHHH------cCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCC
Confidence            457899999999999999999999      8999999999987665442 222221       11122222222222222


Q ss_pred             CCccc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCCccc-----------------cchHHHHHHHHHHHHHc
Q psy2240          92 LNTPV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHGNYV-----------------VRLGHVVKWLGEQAEAM  144 (182)
Q Consensus        92 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----------------~~~~~l~~~l~~~~~~~  144 (182)
                      +.+..        ..+.+.|+... ...+....+.  .....++..                 -....+...|.+.+++.
T Consensus       101 ~~d~~lv~~l~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~  179 (617)
T PTZ00139        101 LGDQDAIQYMCREAPQAVLELESY-GLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKY  179 (617)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhc-CCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhC
Confidence            22211        22445555432 2222111110  000000100                 02357889999999889


Q ss_pred             CcEEecCCccceeEEcCCCcEEEEE
Q psy2240         145 GVEIYPGIPASEVLYHGDGSVKGIA  169 (182)
Q Consensus       145 gv~i~~~~~v~~i~~~~~g~~~~v~  169 (182)
                      |+++++++.++++..++++.+.|+.
T Consensus       180 gv~i~~~~~~~~Li~~~~g~v~Gv~  204 (617)
T PTZ00139        180 DCNFFIEYFALDLIMDEDGECRGVI  204 (617)
T ss_pred             CCEEEeceEEEEEEECCCCEEEEEE
Confidence            9999999999998875567777643

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.59  E-value=6.1e-14  Score=105.61  Aligned_cols=146  Identities=17%  Similarity=0.157  Sum_probs=82.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      ....+|+|||||++||++|.+|.+      .|++|+|+||.+..||.+.-........+    ....    . .......
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~------~G~~v~vfE~~~~vGG~W~~~~~~~~d~~----~~~~----~-~~~~~s~   72 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRR------EGHTVVVFEREKQVGGLWVYTPKSESDPL----SLDP----T-RSIVHSS   72 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHh------cCCeEEEEecCCCCcceeecCCCcCCCcc----ccCC----C-Ccccchh
Confidence            345689999999999999999999      89999999999998876532111100000    0000    0 0000001


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCC-------CCccccchHHHHHHHHHHHHHcCcE--EecCCccceeEEcCCCcEEEEE-
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNN-------HGNYVVRLGHVVKWLGEQAEAMGVE--IYPGIPASEVLYHGDGSVKGIA-  169 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~gv~--i~~~~~v~~i~~~~~g~~~~v~-  169 (182)
                      .+..+..+.....-.+.++|...       .........++.++|.+.+++.++.  |+++++|+++...++.+.+.+. 
T Consensus        73 ~Y~~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~  152 (461)
T PLN02172         73 VYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKN  152 (461)
T ss_pred             hhhhhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEc
Confidence            11111111100000111111110       1122345678999999999999987  9999999999875444433221 


Q ss_pred             --------eCCEEEecCCC
Q psy2240         170 --------TGDVGIAKDGS  180 (182)
Q Consensus       170 --------~~~~vi~adG~  180 (182)
                              ..|.||.|.|+
T Consensus       153 ~~~~~~~~~~d~VIvAtG~  171 (461)
T PLN02172        153 SGGFSKDEIFDAVVVCNGH  171 (461)
T ss_pred             CCCceEEEEcCEEEEeccC
Confidence                    12667777774

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.59  E-value=8.6e-14  Score=107.76  Aligned_cols=45  Identities=38%  Similarity=0.659  Sum_probs=40.0

Q ss_pred             ccccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        17 ~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..++.++||||||+|++|+++|+.+++      .|.+|+||||.+..+|.+
T Consensus         6 ~~~~~~~DVvVVG~G~AGl~AA~~aae------~G~~VivlEk~~~~gG~t   50 (584)
T PRK12835          6 QNFDREVDVLVVGSGGGGMTAALTAAA------RGLDTLVVEKSAHFGGST   50 (584)
T ss_pred             CCccCcCCEEEECccHHHHHHHHHHHH------CCCcEEEEEcCCCCCchH
Confidence            346678999999999999999999999      899999999998877654

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.59  E-value=1.6e-14  Score=107.29  Aligned_cols=140  Identities=22%  Similarity=0.323  Sum_probs=79.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      +||+||||||+|+++|+.|++      .|++|+||||......  .+++.+....+ +.++.+....   ...+.  ...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~------~G~~V~llE~~~~~~~--~cg~~i~~~~l-~~~g~~~~~~---~~~i~--~~~   66 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLAS------AGIQTFLLERKPDNAK--PCGGAIPLCMV-DEFALPRDII---DRRVT--KMK   66 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHh------CCCcEEEEecCCCCCC--CccccccHhhH-hhccCchhHH---Hhhhc--eeE
Confidence            489999999999999999999      8999999999864332  23444433222 2222111100   00000  000


Q ss_pred             HHHhhccCCCCCCCCCCCCCCC-ccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC---CCcEE------------
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHG-NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG---DGSVK------------  166 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~---~g~~~------------  166 (182)
                      .+.. ....+.. .. ...... .+.++|..|.+.|.+.+.+.|++++.++ +++++...   +...+            
T Consensus        67 ~~~p-~~~~~~~-~~-~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g  142 (398)
T TIGR02028        67 MISP-SNIAVDI-GR-TLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSG  142 (398)
T ss_pred             EecC-CceEEEe-cc-CCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCC
Confidence            0000 0000000 00 000111 2368999999999999999999998875 66664311   11111            


Q ss_pred             --EEEeCCEEEecCCC
Q psy2240         167 --GIATGDVGIAKDGS  180 (182)
Q Consensus       167 --~v~~~~~vi~adG~  180 (182)
                        .....++||+|||+
T Consensus       143 ~~~~i~a~~VIgADG~  158 (398)
T TIGR02028       143 TRCTLEVDAVIGADGA  158 (398)
T ss_pred             CccEEEeCEEEECCCc
Confidence              13456999999997

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.59  E-value=1.4e-13  Score=104.42  Aligned_cols=141  Identities=22%  Similarity=0.293  Sum_probs=78.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC--CCCccc-cccc--cCh---------hHHhhhhhhH
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE--VGGHIL-SGAV--IDP---------IALNELLPDW   85 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~--~~g~~~-~~~~--~~~---------~~~~~~~~~~   85 (182)
                      +.++||||||+|++|+++|+.+++      .|.+|+||||.+.  .+|.+. +++.  ...         ......+.++
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~------~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~   75 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAARE------AGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDL   75 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHH
Confidence            457899999999999999999999      8999999999974  455432 2221  000         0011222222


Q ss_pred             HhcCCCCCcc--------chhhhHHHHHhhccCCCCCCCCCCCC-CCCc--cccchHHHHHHHHHHHHHcCcEEecCCcc
Q psy2240          86 KDLGAPLNTP--------VHEDKFAYLTKSKRIGIPILPGMPMN-NHGN--YVVRLGHVVKWLGEQAEAMGVEIYPGIPA  154 (182)
Q Consensus        86 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~l~~~l~~~~~~~gv~i~~~~~v  154 (182)
                      ..........        ...+.+.|+...+ ..+......... ....  ..-....+...|.+.+++.|++++++++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~s~~~~~wl~~~G-v~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v  154 (466)
T PRK08274         76 LRVTGGRTDEALARLLIRESSDCRDWMRKHG-VRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPV  154 (466)
T ss_pred             HHhhCCCCCHHHHHHHHHcCHHHHHHHHhCC-ceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEE
Confidence            2221111111        0112344443321 111111000000 0000  01113568888999999999999999999


Q ss_pred             ceeEEcCCCcEEEE
Q psy2240         155 SEVLYHGDGSVKGI  168 (182)
Q Consensus       155 ~~i~~~~~g~~~~v  168 (182)
                      +++..+ ++.++++
T Consensus       155 ~~l~~~-~g~v~gv  167 (466)
T PRK08274        155 TALELD-DGRFVGA  167 (466)
T ss_pred             EEEEec-CCeEEEE
Confidence            999873 4655553

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.58  E-value=1.2e-13  Score=105.54  Aligned_cols=44  Identities=23%  Similarity=0.339  Sum_probs=38.6

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      |+.++||+|||||++|+++|+.|++      +|++|+||||.....|.+.
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~------rGl~V~LvEk~d~~~GtS~   46 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAG------RGLSVLLCEQDDLASATSS   46 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCCCccc
Confidence            4557899999999999999999999      9999999999977666553

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.58  E-value=1.1e-13  Score=107.83  Aligned_cols=143  Identities=17%  Similarity=0.148  Sum_probs=84.1

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-------hhHHhhhhhhHHhcCC
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-------PIALNELLPDWKDLGA   90 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-------~~~~~~~~~~~~~~~~   90 (182)
                      ...++||+|||+|++|+++|+.+++      .|.+|+||||....++.+. +.+.+.       .......+.+....+.
T Consensus        47 ~~~~~DVlVIG~G~AGl~AAl~Aae------~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~  120 (635)
T PLN00128         47 VDHTYDAVVVGAGGAGLRAAIGLSE------HGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSD  120 (635)
T ss_pred             eeeecCEEEECccHHHHHHHHHHHh------cCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhC
Confidence            3456899999999999999999999      8999999999987665442 222211       1222222233322222


Q ss_pred             CCCccc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCCcc-----------------ccchHHHHHHHHHHHHH
Q psy2240          91 PLNTPV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHGNY-----------------VVRLGHVVKWLGEQAEA  143 (182)
Q Consensus        91 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------~~~~~~l~~~l~~~~~~  143 (182)
                      .+.++.        .++.+.|+... ...+....+.  .....++.                 .-....+...|.+.+.+
T Consensus       121 ~~~d~~lv~~l~~~s~~~i~~L~~~-Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~  199 (635)
T PLN00128        121 WLGDQDAIQYMCREAPKAVIELENY-GLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMK  199 (635)
T ss_pred             CCCCHHHHHHHHHhHHHHHHHHHhC-CCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHh
Confidence            222211        22344555432 2222211110  00000000                 01245688899998888


Q ss_pred             cCcEEecCCccceeEEcCCCcEEEE
Q psy2240         144 MGVEIYPGIPASEVLYHGDGSVKGI  168 (182)
Q Consensus       144 ~gv~i~~~~~v~~i~~~~~g~~~~v  168 (182)
                      .|++|++++.++++..++++.+.|+
T Consensus       200 ~gv~i~~~~~~~~Li~~~~g~v~Gv  224 (635)
T PLN00128        200 HNTQFFVEYFALDLIMDSDGACQGV  224 (635)
T ss_pred             CCCEEEEeeEEEEEEEcCCCEEEEE
Confidence            8999999999999877546666664

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.58  E-value=2.6e-13  Score=104.64  Aligned_cols=45  Identities=38%  Similarity=0.576  Sum_probs=39.9

Q ss_pred             ccccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        17 ~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ..++.++||||||+| +|+++|+.+++      .|.+|+||||.+..||.+.
T Consensus        11 ~~~d~e~DvvvvG~G-~G~~aA~~a~~------~G~~v~v~Ek~~~~GG~~~   55 (564)
T PRK12845         11 PVRDTTVDLLVVGSG-TGMAAALAAHE------LGLSVLIVEKSSYVGGSTA   55 (564)
T ss_pred             CCCCceeCEEEECCc-HHHHHHHHHHH------CCCcEEEEecCCCCcCccc
Confidence            345678999999999 89999999999      8999999999988888664

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.58  E-value=8.4e-14  Score=106.37  Aligned_cols=156  Identities=18%  Similarity=0.171  Sum_probs=87.6

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccc-ccccCh----------hHHhhhhhhHH-
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-GAVIDP----------IALNELLPDWK-   86 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~-~~~~~~----------~~~~~~~~~~~-   86 (182)
                      |..++||+|||||++|+++|+.|++      +|++|+||||....+|.+.. .+.+..          ....+.+..+. 
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~------rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~   76 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAG------RGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREV   76 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHh------CCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3456899999999999999999999      89999999999766665542 222211          11111111111 


Q ss_pred             --hcCCCCCc------cchh-h--h------HHHHHhhcc-CCCC---CCC-----C-CCC-------CCCCccccchHH
Q psy2240          87 --DLGAPLNT------PVHE-D--K------FAYLTKSKR-IGIP---ILP-----G-MPM-------NNHGNYVVRLGH  132 (182)
Q Consensus        87 --~~~~~~~~------~~~~-~--~------~~~~~~~~~-~~~~---~~~-----~-~~~-------~~~~~~~~~~~~  132 (182)
                        .....+..      +... .  .      +..+..... ..++   .+.     . .+.       +.+...++++..
T Consensus        77 l~~~ap~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~r  156 (502)
T PRK13369         77 LLAAAPHIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDAR  156 (502)
T ss_pred             HHHhCCccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHH
Confidence              11100000      0000 0  0      011111000 0000   000     0 010       111233578889


Q ss_pred             HHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE---------EEeCCEEEecCCC
Q psy2240         133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG---------IATGDVGIAKDGS  180 (182)
Q Consensus       133 l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~---------v~~~~~vi~adG~  180 (182)
                      +...+...+++.|++++.+++|+++..+++.+.+.         .+..+.||.|.|.
T Consensus       157 l~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~  213 (502)
T PRK13369        157 LVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGP  213 (502)
T ss_pred             HHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCc
Confidence            99999999999999999999999998744322221         1456788988885

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.57  E-value=2.5e-14  Score=106.18  Aligned_cols=147  Identities=18%  Similarity=0.164  Sum_probs=81.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC--CccccccccChh--HHhhhhhhHHhcCCCCCccch
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG--GHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~--g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   97 (182)
                      .+||+||||||+|+++|+.|++      .|++|+||||.+...  ..... +.+.+.  .+.+.++.|+..... .....
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~------~G~~v~viE~~~~~~~~~~~~a-~~l~~~~~~~L~~lGl~~~l~~~-~~~~~   73 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHK------AGIDNVILERQSRDYVLGRIRA-GVLEQGTVDLLREAGVDERMDRE-GLVHE   73 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHH------CCCCEEEEECCCCcccCCceeE-eeECHHHHHHHHHCCChHHHHhc-Cceec
Confidence            4699999999999999999999      899999999997521  11112 223332  334445544433210 01110


Q ss_pred             hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE-cCCCcEEE--------E
Q psy2240          98 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY-HGDGSVKG--------I  168 (182)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~-~~~g~~~~--------v  168 (182)
                      ...  .........++. .... .........+..+.+.|.+.+.+.|+.++++++++.+.. ++++..+.        .
T Consensus        74 ~~~--~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~  149 (390)
T TIGR02360        74 GTE--IAFDGQRFRIDL-KALT-GGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHR  149 (390)
T ss_pred             ceE--EeeCCEEEEEec-cccC-CCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEE
Confidence            000  000000000110 0000 000011234567888899988888999999988877753 22222221        2


Q ss_pred             EeCCEEEecCCC
Q psy2240         169 ATGDVGIAKDGS  180 (182)
Q Consensus       169 ~~~~~vi~adG~  180 (182)
                      ...++||+|||.
T Consensus       150 i~adlvIGADG~  161 (390)
T TIGR02360       150 LDCDFIAGCDGF  161 (390)
T ss_pred             EEeCEEEECCCC
Confidence            345899999996

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.57  E-value=8.7e-14  Score=105.43  Aligned_cols=41  Identities=22%  Similarity=0.158  Sum_probs=35.3

Q ss_pred             CCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC
Q psy2240         123 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG  163 (182)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g  163 (182)
                      +....+++..+.+.|.+.+++.|++|+++++|++++.++++
T Consensus       170 p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~  210 (483)
T TIGR01320       170 AEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDG  210 (483)
T ss_pred             CCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC
Confidence            44567899999999999999999999999999999875443

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.56  E-value=9.9e-14  Score=104.43  Aligned_cols=57  Identities=25%  Similarity=0.387  Sum_probs=44.7

Q ss_pred             CCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEE-------eCCEEEecCCC
Q psy2240         123 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIA-------TGDVGIAKDGS  180 (182)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~-------~~~~vi~adG~  180 (182)
                      ..+++++|..+.+.|.+.+++.|++++.+ +|+++..+++|.+.+|.       ..+++|.|.|.
T Consensus       146 ~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~  209 (454)
T PF04820_consen  146 NYAYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGR  209 (454)
T ss_dssp             S-EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGG
T ss_pred             CeeEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCc
Confidence            34789999999999999999999999987 58888877788776654       45999999996

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.55  E-value=2.5e-13  Score=105.55  Aligned_cols=142  Identities=17%  Similarity=0.131  Sum_probs=81.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-------hhHHhhhhhhHHhcCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-------PIALNELLPDWKDLGAPL   92 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~   92 (182)
                      .++||+|||+|++|+++|+.+++      .|.+|+||||....++.+. +.+.+.       .......+.+....+..+
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~------~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~   84 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAE------AGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWL   84 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHH------cCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCC
Confidence            46899999999999999999999      8999999999876555432 222211       111111122222222222


Q ss_pred             Cccc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCCcc-----------------ccchHHHHHHHHHHHHHcC
Q psy2240          93 NTPV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHGNY-----------------VVRLGHVVKWLGEQAEAMG  145 (182)
Q Consensus        93 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------~~~~~~l~~~l~~~~~~~g  145 (182)
                      .+..        ..+.+.|+... ...+....+.  .....++.                 .-....+...|.+.+++.|
T Consensus        85 ~d~~lv~~l~~~s~~~i~~L~~~-Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~g  163 (598)
T PRK09078         85 GDQDAIEYMCREAPAAVYELEHY-GVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHN  163 (598)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHc-CCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcC
Confidence            2211        12334454332 2222111110  00000000                 0123468889999898889


Q ss_pred             cEEecCCccceeEEcCCCcEEEEE
Q psy2240         146 VEIYPGIPASEVLYHGDGSVKGIA  169 (182)
Q Consensus       146 v~i~~~~~v~~i~~~~~g~~~~v~  169 (182)
                      ++|++++.++++..+++++++|+.
T Consensus       164 i~i~~~~~v~~Li~~~~g~v~Gv~  187 (598)
T PRK09078        164 AEFFIEYFALDLIMDDGGVCRGVV  187 (598)
T ss_pred             CEEEEeEEEEEEEEcCCCEEEEEE
Confidence            999999999999875556677653

>PRK12839 hypothetical protein; Provisional

Probab=99.55  E-value=3.6e-13  Score=104.10  Aligned_cols=44  Identities=39%  Similarity=0.566  Sum_probs=38.8

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      +..++||+|||+|.+|+++|+.+++      .|.+|+||||....+|.+.
T Consensus         5 ~~~~~dv~ViG~G~aG~~aa~~~~~------~g~~v~~iek~~~~gg~~~   48 (572)
T PRK12839          5 MTHTYDVVVVGSGAGGLSAAVAAAY------GGAKVLVVEKASTCGGATA   48 (572)
T ss_pred             cCCcCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCcccc
Confidence            3457899999999999999999999      8999999999988777653

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.55  E-value=1e-13  Score=103.82  Aligned_cols=138  Identities=28%  Similarity=0.365  Sum_probs=80.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-ccccc---C---------hhHHhhhhhhHHhcCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVI---D---------PIALNELLPDWKDLGA   90 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~---~---------~~~~~~~~~~~~~~~~   90 (182)
                      ||||||+|++|+++|+.+++      +|.+|+||||.+..+|.+. +++.+   .         .......+.++.....
T Consensus         1 DVvVIG~G~AGl~AA~~Aae------~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   74 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAE------AGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGG   74 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHH------TTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTT
T ss_pred             CEEEECCCHHHHHHHHHHhh------hcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccc
Confidence            89999999999999999999      8999999999998776442 22221   0         0122233333333322


Q ss_pred             CCCcc--------chhhhHHHHHhhccCCCCCC--CC-----CCCCCCC------------ccccchHHHHHHHHHHHHH
Q psy2240          91 PLNTP--------VHEDKFAYLTKSKRIGIPIL--PG-----MPMNNHG------------NYVVRLGHVVKWLGEQAEA  143 (182)
Q Consensus        91 ~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~------------~~~~~~~~l~~~l~~~~~~  143 (182)
                      ...+.        ...+.+.|+.... ..+...  ..     .......            ........+...|.+.+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~  153 (417)
T PF00890_consen   75 GLNDPDLVRAFVENSPEAIDWLEELG-VPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEE  153 (417)
T ss_dssp             T-S-HHHHHHHHHHHHHHHHHHHHTT---B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhcccceehhhhhhc-ccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhh
Confidence            22111        1123445554432 112110  00     0000000            1112456789999999999


Q ss_pred             cCcEEecCCccceeEEcCCCcEEEEE
Q psy2240         144 MGVEIYPGIPASEVLYHGDGSVKGIA  169 (182)
Q Consensus       144 ~gv~i~~~~~v~~i~~~~~g~~~~v~  169 (182)
                      .|++|+++++++++..+ +++++++.
T Consensus       154 ~gv~i~~~~~~~~Li~e-~g~V~Gv~  178 (417)
T PF00890_consen  154 AGVDIRFNTRVTDLITE-DGRVTGVV  178 (417)
T ss_dssp             TTEEEEESEEEEEEEEE-TTEEEEEE
T ss_pred             cCeeeeccceeeeEEEe-CCceeEEE
Confidence            99999999999999884 56777643

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.55  E-value=5.8e-13  Score=103.40  Aligned_cols=142  Identities=20%  Similarity=0.162  Sum_probs=80.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-ccccc-------ChhHHhhhhhhHHhcCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVI-------DPIALNELLPDWKDLGAP   91 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~-------~~~~~~~~~~~~~~~~~~   91 (182)
                      ..++||+|||+|.+|+++|+.+++      .|.+|+||||....++.+. +.+.+       ........+.+....+..
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~------~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~   83 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLAR------AGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDW   83 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHH------CCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCC
Confidence            346899999999999999999999      8999999999876555442 22211       111222222222222222


Q ss_pred             CCccc--------hhhhHHHHHhhccCCCCCCCC--CCCCCCCcc----------------ccchHHHHHHHHHHHHHcC
Q psy2240          92 LNTPV--------HEDKFAYLTKSKRIGIPILPG--MPMNNHGNY----------------VVRLGHVVKWLGEQAEAMG  145 (182)
Q Consensus        92 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------------~~~~~~l~~~l~~~~~~~g  145 (182)
                      +.+..        ..+.+.|+.. ....+....+  +.....++.                .-....+...|.+.+.+.|
T Consensus        84 ~~d~~~v~~~~~~a~~~i~~L~~-~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~g  162 (591)
T PRK07057         84 LGDQDAIEFMCREAPNVVYELEH-FGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAK  162 (591)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh-cCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcC
Confidence            22211        1223444432 1122211110  000000000                0123568888999888899


Q ss_pred             cEEecCCccceeEEcCCCcEEEE
Q psy2240         146 VEIYPGIPASEVLYHGDGSVKGI  168 (182)
Q Consensus       146 v~i~~~~~v~~i~~~~~g~~~~v  168 (182)
                      +++++++.++++..++++.+.|+
T Consensus       163 i~i~~~~~~~~Li~~~~g~v~Gv  185 (591)
T PRK07057        163 TQFFVEWMALDLIRDADGDVLGV  185 (591)
T ss_pred             CEEEeCcEEEEEEEcCCCeEEEE
Confidence            99999999999987556666654

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.54  E-value=4.1e-13  Score=103.81  Aligned_cols=141  Identities=18%  Similarity=0.165  Sum_probs=81.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC---------hhHHhhhhhhHHhcCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID---------PIALNELLPDWKDLGA   90 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~---------~~~~~~~~~~~~~~~~   90 (182)
                      .++||+|||+|.+|+++|+.+++      .|.+|+||||.+..++.+. +++.+.         .......+.+....+.
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae------~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~   77 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIAS------AGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGD   77 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHH------CCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhc
Confidence            46899999999999999999999      8999999999976665442 222221         1111122222222222


Q ss_pred             CCCccc--------hhhhHHHHHhhccCCCCCCCCCC--CCCCCcc------c---cchHHHHHHHHHHHHHcCcEEecC
Q psy2240          91 PLNTPV--------HEDKFAYLTKSKRIGIPILPGMP--MNNHGNY------V---VRLGHVVKWLGEQAEAMGVEIYPG  151 (182)
Q Consensus        91 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~---~~~~~l~~~l~~~~~~~gv~i~~~  151 (182)
                      .+.+..        ..+.+.|+.. ....+....+..  ....++.      .   -....+...|.+.+++.|++++++
T Consensus        78 ~~~d~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~  156 (566)
T PRK06452         78 YLVDQDAAELLSNKSGEIVMLLER-WGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNE  156 (566)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH-CCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence            222111        1233455543 222222111100  0000000      0   123568888888888889999999


Q ss_pred             CccceeEEcCCCcEEEEE
Q psy2240         152 IPASEVLYHGDGSVKGIA  169 (182)
Q Consensus       152 ~~v~~i~~~~~g~~~~v~  169 (182)
                      +.++++.. ++|+++|+.
T Consensus       157 ~~~~~Li~-~~g~v~Gv~  173 (566)
T PRK06452        157 WFSLDLVT-DNKKVVGIV  173 (566)
T ss_pred             cEEEEEEE-ECCEEEEEE
Confidence            99999987 457777643

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.54  E-value=4.8e-13  Score=102.43  Aligned_cols=44  Identities=32%  Similarity=0.602  Sum_probs=39.1

Q ss_pred             ccccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          17 ERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        17 ~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..++.++||||||+| +|+++|+++++      .|.+|+||||.+..+|.+
T Consensus         2 ~~~d~~~DVvVVG~G-aGl~aA~~aa~------~G~~V~vlEk~~~~Gg~t   45 (513)
T PRK12837          2 SAWDEEVDVLVAGSG-GGVAGAYTAAR------EGLSVALVEATDKFGGTT   45 (513)
T ss_pred             CCCCCccCEEEECch-HHHHHHHHHHH------CCCcEEEEecCCCCCcce
Confidence            345678999999999 99999999999      899999999998777765

>PRK08275 putative oxidoreductase; Provisional

Probab=99.54  E-value=3.6e-13  Score=104.03  Aligned_cols=144  Identities=24%  Similarity=0.270  Sum_probs=79.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccc-c-cccC------hhHHhhhhhhHHhcCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-G-AVID------PIALNELLPDWKDLGAP   91 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~-~-~~~~------~~~~~~~~~~~~~~~~~   91 (182)
                      ..++||+|||+|.+|+++|+.+++.    +.|.+|+||||.+..++...+ + +.+.      .......+.+.......
T Consensus         7 ~~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~   82 (554)
T PRK08275          7 EVETDILVIGGGTAGPMAAIKAKER----NPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDG   82 (554)
T ss_pred             eEecCEEEECcCHHHHHHHHHHHHh----CCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCC
Confidence            4568999999999999999999981    137899999999864332211 1 1111      11122222222222222


Q ss_pred             CCccc--------hhhhHHHHHhhccCCCCCCCC--CCC---CCCCcc---ccchHHHHHHHHHHHHHcCcEEecCCccc
Q psy2240          92 LNTPV--------HEDKFAYLTKSKRIGIPILPG--MPM---NNHGNY---VVRLGHVVKWLGEQAEAMGVEIYPGIPAS  155 (182)
Q Consensus        92 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~---~~~~~~l~~~l~~~~~~~gv~i~~~~~v~  155 (182)
                      +.+..        ..+.+.|+... ...+....+  +..   ...+.+   ......+.+.|.+.+++.|++|++++.|+
T Consensus        83 ~~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~  161 (554)
T PRK08275         83 IVDQKAVYAYAEHSFETIQQLDRW-GVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMAT  161 (554)
T ss_pred             CccHHHHHHHHHhhHHHHHHHHHC-CCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEE
Confidence            22111        12334444332 122211110  000   000001   01234688899999988999999999999


Q ss_pred             eeEEcCCCcEEEE
Q psy2240         156 EVLYHGDGSVKGI  168 (182)
Q Consensus       156 ~i~~~~~g~~~~v  168 (182)
                      +|..++++.+.|+
T Consensus       162 ~Li~~~~g~v~Gv  174 (554)
T PRK08275        162 RLLTDADGRVAGA  174 (554)
T ss_pred             EEEEcCCCeEEEE
Confidence            9987545666553

>PLN02463 lycopene beta cyclase

Probab=99.54  E-value=8.1e-14  Score=104.45  Aligned_cols=136  Identities=20%  Similarity=0.127  Sum_probs=79.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+|||+.+...- ..+.+.. ...+ +.++....             
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~------~Gl~V~liE~~~~~~~-p~~~g~w-~~~l-~~lgl~~~-------------   84 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSE------AGLSVCCIDPSPLSIW-PNNYGVW-VDEF-EALGLLDC-------------   84 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHH------CCCeEEEeccCccchh-ccccchH-HHHH-HHCCcHHH-------------
Confidence            45899999999999999999999      8999999999764210 0000000 0001 00110000             


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEE
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGI  175 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi  175 (182)
                      +...........+. ............+++..|.+.|.+.+.+.|++++ ..+|++++.++++..+.     ...+++||
T Consensus        85 l~~~w~~~~v~~~~-~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI  162 (447)
T PLN02463         85 LDTTWPGAVVYIDD-GKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVL  162 (447)
T ss_pred             HHhhCCCcEEEEeC-CCCccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEE
Confidence            00000000000000 0000011124468999999999999988899987 56899998754443221     35578999


Q ss_pred             ecCCC
Q psy2240         176 AKDGS  180 (182)
Q Consensus       176 ~adG~  180 (182)
                      .|+|.
T Consensus       163 ~AdG~  167 (447)
T PLN02463        163 DATGF  167 (447)
T ss_pred             ECcCC
Confidence            99996

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.54  E-value=2.5e-13  Score=101.94  Aligned_cols=138  Identities=20%  Similarity=0.186  Sum_probs=78.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC----hhHHhhhhhhHHhcCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID----PIALNELLPDWKDLGAPLNTP   95 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~   95 (182)
                      .++||||||+|.+|+++|+.+ .      .|.+|+||||.+..++.+. +.+.+.    .......+.++...+....+.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a-~------~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~   75 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNL-R------KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNL   75 (433)
T ss_pred             ccccEEEECchHHHHHHHHHh-c------cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCH
Confidence            568999999999999999997 4      5899999999987776543 222221    122233333333222221111


Q ss_pred             --------chhhhHHHHHhhccCCCCCCCCCCCC-CCCc----c-----ccchHHHHHHHHHHHHH-cCcEEecCCccce
Q psy2240          96 --------VHEDKFAYLTKSKRIGIPILPGMPMN-NHGN----Y-----VVRLGHVVKWLGEQAEA-MGVEIYPGIPASE  156 (182)
Q Consensus        96 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~-----~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~  156 (182)
                              ...+.+.|+...+ ..+....+...+ ..+.    .     ......+.+.|.+.+++ .|++|++++++++
T Consensus        76 ~lv~~~~~~s~e~i~wL~~~G-v~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~  154 (433)
T PRK06175         76 EAVKILANESIENINKLIDMG-LNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVD  154 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC-CccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeee
Confidence                    1223455554322 222111100000 0000    0     11235678888888865 5899999999999


Q ss_pred             eEEcCCCcEEE
Q psy2240         157 VLYHGDGSVKG  167 (182)
Q Consensus       157 i~~~~~g~~~~  167 (182)
                      |..+ ++.+++
T Consensus       155 Li~~-~~~v~G  164 (433)
T PRK06175        155 IIEN-DNTCIG  164 (433)
T ss_pred             eEec-CCEEEE
Confidence            9763 455554

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.53  E-value=6.5e-13  Score=103.41  Aligned_cols=141  Identities=18%  Similarity=0.146  Sum_probs=79.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCC--CceEEEEecCCCCCCccccccc--cC-----hhHHhhhhhhHHhcCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGK--ELKVCLVEKAAEVGGHILSGAV--ID-----PIALNELLPDWKDLGA   90 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~--g~~v~vlE~~~~~~g~~~~~~~--~~-----~~~~~~~~~~~~~~~~   90 (182)
                      ..++||+|||+|++|+++|+.+++      .  |.+|+||||.+..++...+++.  ..     .......+.+......
T Consensus         9 ~~~~DVlVIG~G~AGl~AAi~Aae------~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~   82 (608)
T PRK06854          9 EVDTDILIIGGGMAGCGAAFEAKE------WAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLM   82 (608)
T ss_pred             eeEeCEEEECcCHHHHHHHHHHHH------hCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhcc
Confidence            346899999999999999999998      6  8999999999764433222221  11     0112222222222222


Q ss_pred             CCCccc--------hhhhHHHHHhhccCCCCCCCCCCCCCC--CccccchHHHHHHHHHHHHHcC-cEEecCCccceeEE
Q psy2240          91 PLNTPV--------HEDKFAYLTKSKRIGIPILPGMPMNNH--GNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLY  159 (182)
Q Consensus        91 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~~  159 (182)
                      ...+..        ....+.|+... ...+....+......  ....+....+.+.|.+.+++.+ +++++++.|+++..
T Consensus        83 ~~~d~~lv~~~~~~s~~~i~~L~~~-Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~  161 (608)
T PRK06854         83 GIVREDLVYDIARHVDSVVHLFEEW-GLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLV  161 (608)
T ss_pred             CCCCHHHHHHHHHhHHHHHHHHHHc-CCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE
Confidence            222210        12334444332 122211111111111  0112456678888888888765 99999999999976


Q ss_pred             cCCCcEEEE
Q psy2240         160 HGDGSVKGI  168 (182)
Q Consensus       160 ~~~g~~~~v  168 (182)
                      + ++.++|+
T Consensus       162 ~-~g~v~Gv  169 (608)
T PRK06854        162 D-DNRIAGA  169 (608)
T ss_pred             e-CCEEEEE
Confidence            3 3555543

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.53  E-value=3.4e-13  Score=103.27  Aligned_cols=141  Identities=19%  Similarity=0.225  Sum_probs=80.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC-CCCCcccc--ccccChhHHhhhhhhHHhcCCCCCccc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA-EVGGHILS--GAVIDPIALNELLPDWKDLGAPLNTPV   96 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~-~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (182)
                      +..+||+|||||++|+.+|+.+++      .|.+|+|||+.. ..|....+  -+.+....+.+.++   ..+       
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR------~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEid---alG-------   65 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAAR------MGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREID---ALG-------   65 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHH------cCCcEEEEecccccccccCCccccccchhhHHHHHHH---hcC-------
Confidence            346999999999999999999999      899999999985 33322111  11111111111111   111       


Q ss_pred             hhhhHHHHHhhccCCCCCCCC--CCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEEEEe---
Q psy2240          97 HEDKFAYLTKSKRIGIPILPG--MPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIAT---  170 (182)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~v~~---  170 (182)
                        ..+..........+..+..  .+........+++..+...|.+.+++. +++++ +..|+++.. +++.+.+|.+   
T Consensus        66 --g~~g~~~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG  141 (618)
T PRK05192         66 --GEMGKAIDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDG  141 (618)
T ss_pred             --CHHHHHHhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCC
Confidence              0011111111111111110  111111234788889999999988765 78875 567888876 4455665543   


Q ss_pred             ----CCEEEecCCC
Q psy2240         171 ----GDVGIAKDGS  180 (182)
Q Consensus       171 ----~~~vi~adG~  180 (182)
                          ++.||.|+|.
T Consensus       142 ~~I~Ak~VIlATGT  155 (618)
T PRK05192        142 LEFRAKAVVLTTGT  155 (618)
T ss_pred             CEEECCEEEEeeCc
Confidence                4778888884

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.53  E-value=6.6e-14  Score=104.75  Aligned_cols=145  Identities=21%  Similarity=0.171  Sum_probs=79.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCCCCCccccccccChhHH--hhhhhhHH---hcCCCCCccch
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWK---DLGAPLNTPVH   97 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~   97 (182)
                      +|+|||||++||++|+.|++      .| ++|+|+||.+.... ...+-.+.+..+  .+.++...   ...........
T Consensus         2 ~V~IiGgGiaGla~A~~L~~------~g~~~v~v~Er~~~~~~-~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~   74 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCK------HSHLNVQLFEAAPAFGE-VGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQ   74 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHh------cCCCCEEEEecCCcCCC-CccceeeCccHHHHHHHcCChhHHHHHhcCCCccCc
Confidence            59999999999999999999      77 69999999976542 112222333222  12222111   11100000000


Q ss_pred             hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCC
Q psy2240          98 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGD  172 (182)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~  172 (182)
                        .. ++...................+...++|..|.+.|.+.+.  +..++++++|++++.+++++.+.     ....+
T Consensus        75 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad  149 (414)
T TIGR03219        75 --DI-WFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCD  149 (414)
T ss_pred             --ce-eEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEee
Confidence              00 0000000000000000000111346889999999988774  35688999999998765554332     23469


Q ss_pred             EEEecCCC
Q psy2240         173 VGIAKDGS  180 (182)
Q Consensus       173 ~vi~adG~  180 (182)
                      +||+|||.
T Consensus       150 ~vVgADG~  157 (414)
T TIGR03219       150 LLIGADGI  157 (414)
T ss_pred             EEEECCCc
Confidence            99999996

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.53  E-value=4.2e-13  Score=100.34  Aligned_cols=35  Identities=20%  Similarity=0.468  Sum_probs=32.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      +||+|||||++|+++|++|++      .|.+|+||||++.+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~------~g~~V~vle~~~~~   36 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQ------RGYQVTVFDRHRYA   36 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCCC
Confidence            599999999999999999999      89999999999743

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.53  E-value=4.5e-13  Score=103.97  Aligned_cols=142  Identities=20%  Similarity=0.201  Sum_probs=81.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC--------hhHHhhhhhhHHhcCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID--------PIALNELLPDWKDLGAP   91 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~--------~~~~~~~~~~~~~~~~~   91 (182)
                      ..+||+|||+|++|+++|+.+++      .|.+|+||||.+..++.+. +++.+.        .......+.+....+..
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~------~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~   75 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAE------AGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDF   75 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHH------cCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCC
Confidence            35699999999999999999999      8999999999987665443 222211        11222333333333322


Q ss_pred             CCccc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCCcc---------ccchHHHHHHHHHHHHHcC----cEE
Q psy2240          92 LNTPV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHGNY---------VVRLGHVVKWLGEQAEAMG----VEI  148 (182)
Q Consensus        92 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~l~~~l~~~~~~~g----v~i  148 (182)
                      +.+..        .++.+.|+... ...+....+.  .....++.         ......+...|.+.+++.+    +++
T Consensus        76 ~~d~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i  154 (589)
T PRK08641         76 LANQPPVKAMCEAAPGIIHLLDRM-GVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTK  154 (589)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEE
Confidence            22211        12334555332 2222111110  00000011         1134568888888776543    789


Q ss_pred             ecCCccceeEEcCCCcEEEEE
Q psy2240         149 YPGIPASEVLYHGDGSVKGIA  169 (182)
Q Consensus       149 ~~~~~v~~i~~~~~g~~~~v~  169 (182)
                      ++++.++++..+++++++|+.
T Consensus       155 ~~~~~~~~Li~~~~g~v~Gv~  175 (589)
T PRK08641        155 YEGWEFLGAVLDDEGVCRGIV  175 (589)
T ss_pred             EeeEEEEEEEECCCCEEEEEE
Confidence            999999998876567777654

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.53  E-value=4.2e-13  Score=103.32  Aligned_cols=154  Identities=23%  Similarity=0.233  Sum_probs=88.3

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCC
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPL   92 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~   92 (182)
                      ...++||+|||+|.+|+++|+.++       .|.+|+||||.+..++.+. +.+.+.     .......+.++...+...
T Consensus         6 ~~~e~DVlVVG~G~AGl~AAi~A~-------~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~   78 (553)
T PRK07395          6 LPSQFDVLVVGSGAAGLYAALCLP-------SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGL   78 (553)
T ss_pred             ccccCCEEEECccHHHHHHHHHhh-------cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCC
Confidence            356789999999999999999985       4889999999987776542 322221     122233333333333222


Q ss_pred             Cccc--------hhhhHHHHHhhccCCCCCCCC-CCCCCCC------cccc---chHHHHHHHHHHHHH-cCcEEecCCc
Q psy2240          93 NTPV--------HEDKFAYLTKSKRIGIPILPG-MPMNNHG------NYVV---RLGHVVKWLGEQAEA-MGVEIYPGIP  153 (182)
Q Consensus        93 ~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~---~~~~l~~~l~~~~~~-~gv~i~~~~~  153 (182)
                      .+..        ..+.+.|+...+ ..+..... ......+      ....   ....+...|.+.+++ .|++|++++.
T Consensus        79 ~d~~lv~~~~~~s~~~i~wL~~~G-v~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~  157 (553)
T PRK07395         79 CDPEAVRFLVEQAPEAIASLVEMG-VAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQAL  157 (553)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcC-CeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcC
Confidence            2211        123445554321 22211100 0000000      0011   235688888888865 4899999999


Q ss_pred             cceeEEcC-CCcEEEEE-----------eCCEEEecCCC
Q psy2240         154 ASEVLYHG-DGSVKGIA-----------TGDVGIAKDGS  180 (182)
Q Consensus       154 v~~i~~~~-~g~~~~v~-----------~~~~vi~adG~  180 (182)
                      ++++..++ ++.++|+.           ++.+|++++|.
T Consensus       158 v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~  196 (553)
T PRK07395        158 ALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG  196 (553)
T ss_pred             hhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence            99998754 36666642           33566777764

>PLN02697 lycopene epsilon cyclase

Probab=99.52  E-value=3e-13  Score=103.02  Aligned_cols=134  Identities=16%  Similarity=0.088  Sum_probs=79.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      ..+||+||||||+|+++|+.|++      .|++|+|||+.......   .+.. ...+ +.++...             .
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak------~Gl~V~LIe~~~p~~~n---~GvW-~~~l-~~lgl~~-------------~  162 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAK------LGLNVGLIGPDLPFTNN---YGVW-EDEF-KDLGLED-------------C  162 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHh------CCCcEEEecCcccCCCc---cccc-hhHH-HhcCcHH-------------H
Confidence            45899999999999999999999      89999999986433211   1110 0011 1011000             0


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE------EEEeCCEE
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK------GIATGDVG  174 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~------~v~~~~~v  174 (182)
                      +...........+.... .........+++..|.+.|.+.+.+.|+++ .+++|+++..++++..+      ....+++|
T Consensus       163 i~~~w~~~~v~~~~~~~-~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lV  240 (529)
T PLN02697        163 IEHVWRDTIVYLDDDKP-IMIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLA  240 (529)
T ss_pred             HHhhcCCcEEEecCCce-eeccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEE
Confidence            00000000000000000 001111336899999999999998889998 57799999865554321      13567999


Q ss_pred             EecCCC
Q psy2240         175 IAKDGS  180 (182)
Q Consensus       175 i~adG~  180 (182)
                      |+|+|+
T Consensus       241 I~AdG~  246 (529)
T PLN02697        241 TVASGA  246 (529)
T ss_pred             EECCCc
Confidence            999997

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.52  E-value=6e-13  Score=102.61  Aligned_cols=141  Identities=21%  Similarity=0.185  Sum_probs=79.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC-CCCccc-ccccc-----ChhHHhhhhhhHHhcCCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE-VGGHIL-SGAVI-----DPIALNELLPDWKDLGAPL   92 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~-~~g~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~   92 (182)
                      ..++||+|||+|.+|+++|+.+ +      .|.+|+||||.+. .+|.+. +.+.+     ........+.++...+...
T Consensus         5 ~~~~DVlVVG~G~AGl~AAi~A-~------~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~   77 (543)
T PRK06263          5 IMITDVLIIGSGGAGARAAIEA-E------RGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYL   77 (543)
T ss_pred             eeccCEEEECccHHHHHHHHHH-h------cCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence            3568999999999999999999 8      7999999999864 344332 22222     1122223333332222222


Q ss_pred             Ccc--------chhhhHHHHHhhccCCCCCCCC--CCCCCCCccc---------cchHHHHHHHHHHHHHcCcEEecCCc
Q psy2240          93 NTP--------VHEDKFAYLTKSKRIGIPILPG--MPMNNHGNYV---------VRLGHVVKWLGEQAEAMGVEIYPGIP  153 (182)
Q Consensus        93 ~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~l~~~l~~~~~~~gv~i~~~~~  153 (182)
                      .+.        .....+.|+... ...+....+  +.....++..         .....+...|.+.+++.|++|++++.
T Consensus        78 ~d~~lv~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~  156 (543)
T PRK06263         78 NDPKLVEILVKEAPKRLKDLEKF-GALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVM  156 (543)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHc-CCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeE
Confidence            111        122334454332 122211000  0000001110         12356888888888888999999999


Q ss_pred             cceeEEcCCCcEEEE
Q psy2240         154 ASEVLYHGDGSVKGI  168 (182)
Q Consensus       154 v~~i~~~~~g~~~~v  168 (182)
                      ++++..++++.++|+
T Consensus       157 v~~Li~~~~~~v~Gv  171 (543)
T PRK06263        157 AIKLIVDENREVIGA  171 (543)
T ss_pred             eeeeEEeCCcEEEEE
Confidence            999987554445553

>TIGR00551 nadB L-aspartate oxidase

Probab=99.52  E-value=7.2e-13  Score=100.97  Aligned_cols=137  Identities=22%  Similarity=0.291  Sum_probs=79.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPLNTP   95 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~   95 (182)
                      ++||+|||+|++|+++|+.+++      .|. |+||||.+..++.+. +.+.+.     .......+.++......+.++
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~------~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~   74 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALAD------QGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDR   74 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHh------CCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCH
Confidence            5799999999999999999998      787 999999977666542 222211     122222333333333222221


Q ss_pred             c--------hhhhHHHHHhhccCCCCCCC--CCCCCCCCc------c---ccchHHHHHHHHHHHHH-cCcEEecCCccc
Q psy2240          96 V--------HEDKFAYLTKSKRIGIPILP--GMPMNNHGN------Y---VVRLGHVVKWLGEQAEA-MGVEIYPGIPAS  155 (182)
Q Consensus        96 ~--------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~---~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~  155 (182)
                      .        ..+.+.|+... ...+....  .+.....++      .   ......+...|.+.+++ .+++|++++.|+
T Consensus        75 ~~v~~~~~~~~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~  153 (488)
T TIGR00551        75 EAVEFVVSDARSAVQWLVDQ-GVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENAL  153 (488)
T ss_pred             HHHHHHHHhHHHHHHHHHHc-CCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEee
Confidence            1        12344555432 22221111  011100001      0   11345788999999987 699999999999


Q ss_pred             eeEEcCCCcEEE
Q psy2240         156 EVLYHGDGSVKG  167 (182)
Q Consensus       156 ~i~~~~~g~~~~  167 (182)
                      ++..+ ++.+.+
T Consensus       154 ~l~~~-~g~v~G  164 (488)
T TIGR00551       154 DLLIE-TGRVVG  164 (488)
T ss_pred             eeecc-CCEEEE
Confidence            99864 455554

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.52  E-value=7.3e-13  Score=104.39  Aligned_cols=151  Identities=20%  Similarity=0.210  Sum_probs=86.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC-CCccc-cccccCh---------hHH-----hhhhhhH
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV-GGHIL-SGAVIDP---------IAL-----NELLPDW   85 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~-~g~~~-~~~~~~~---------~~~-----~~~~~~~   85 (182)
                      .+||+|||||++|+++|++|++      +|.+|+|||+...+ .+.+. +++.+.+         ..+     ......|
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~------~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~  333 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALAR------RGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFY  333 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHH------CCCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999      89999999998643 33332 2222211         011     0112223


Q ss_pred             Hhc---CCCCC----ccc----hhhhHHHHH---hhcc----------------CCCCCCCCCCCCCCCccccchHHHHH
Q psy2240          86 KDL---GAPLN----TPV----HEDKFAYLT---KSKR----------------IGIPILPGMPMNNHGNYVVRLGHVVK  135 (182)
Q Consensus        86 ~~~---~~~~~----~~~----~~~~~~~~~---~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~  135 (182)
                      ...   +....    ..+    .......+.   ....                ...+. .....+.+...++++..+.+
T Consensus       334 ~~l~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~-~~~g~~~p~~G~v~p~~l~~  412 (662)
T PRK01747        334 DALPAAGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPV-PCGGIFYPQGGWLCPAELCR  412 (662)
T ss_pred             HHHHhcCCCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCC-CCCcEEeCCCCeeCHHHHHH
Confidence            322   11110    000    011111110   0000                00000 00112333456788999999


Q ss_pred             HHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEecCCC
Q psy2240         136 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIAKDGS  180 (182)
Q Consensus       136 ~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~adG~  180 (182)
                      .|.+.+++ |++++++++|+++..+++++.+.     +...+.||.|+|+
T Consensus       413 aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~  461 (662)
T PRK01747        413 ALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGH  461 (662)
T ss_pred             HHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCC
Confidence            99999988 99999999999998754433321     2346778888876

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.52  E-value=3.2e-13  Score=91.61  Aligned_cols=126  Identities=27%  Similarity=0.302  Sum_probs=68.5

Q ss_pred             EEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCCCCCCccccccccChhHHhhhhhhH---HhcCCCCCccchhhhH
Q psy2240          26 VIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAAEVGGHILSGAVIDPIALNELLPDW---KDLGAPLNTPVHEDKF  101 (182)
Q Consensus        26 ~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  101 (182)
                      +|||||++|+++|..|.+      .|++ ++||||.+.+||.+..-...     ......+   ................
T Consensus         1 ~IIGaG~aGl~~a~~l~~------~g~~~v~v~e~~~~~Gg~w~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLE------RGIDPVVVLERNDRPGGVWRRYYSY-----TRLHSPSFFSSDFGLPDFESFSFDDS   69 (203)
T ss_dssp             EEE--SHHHHHHHHHHHH------TT---EEEEESSSSSTTHHHCH-TT-----TT-BSSSCCTGGSS--CCCHSCHHHH
T ss_pred             CEECcCHHHHHHHHHHHh------CCCCcEEEEeCCCCCCCeeEEeCCC-----CccccCccccccccCCcccccccccC
Confidence            799999999999999999      8999 99999998888754310000     0000000   0000000000000000


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE-----EeCCEEEe
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-----ATGDVGIA  176 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v-----~~~~~vi~  176 (182)
                      .....                 ........++.++|.+.+++.+++++++++|+++.++++++.+.+     ..++.||.
T Consensus        70 ~~~~~-----------------~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVl  132 (203)
T PF13738_consen   70 PEWRW-----------------PHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVL  132 (203)
T ss_dssp             HHHHH-----------------SBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE
T ss_pred             CCCCC-----------------CcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEE
Confidence            00000                 022356678899999999999999999999999999877765532     22455555


Q ss_pred             cCC
Q psy2240         177 KDG  179 (182)
Q Consensus       177 adG  179 (182)
                      |.|
T Consensus       133 AtG  135 (203)
T PF13738_consen  133 ATG  135 (203)
T ss_dssp             ---
T ss_pred             eee
Confidence            555

...

>PLN02815 L-aspartate oxidase

Probab=99.51  E-value=1.2e-12  Score=101.33  Aligned_cols=153  Identities=16%  Similarity=0.168  Sum_probs=89.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPLN   93 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~   93 (182)
                      ..++||+|||+|.+|+++|+.+++      .| +|+||||.+..++.+. +.+.+.     ......++.++...+..+.
T Consensus        27 ~~~~DVlVVG~G~AGl~AAl~Aae------~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~   99 (594)
T PLN02815         27 TKYFDFLVIGSGIAGLRYALEVAE------YG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLC   99 (594)
T ss_pred             ccccCEEEECccHHHHHHHHHHhh------CC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCC
Confidence            346899999999999999999999      78 9999999988776543 322221     1223333344333333222


Q ss_pred             ccc--------hhhhHHHHHhhccCCCCCCCC--CCCCCCCcc---------ccchHHHHHHHHHHHHHc-CcEEecCCc
Q psy2240          94 TPV--------HEDKFAYLTKSKRIGIPILPG--MPMNNHGNY---------VVRLGHVVKWLGEQAEAM-GVEIYPGIP  153 (182)
Q Consensus        94 ~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~l~~~l~~~~~~~-gv~i~~~~~  153 (182)
                      ++.        ..+.+.|+...+ ..+....+  +.....++.         ......+...|.+.+++. +++|++++.
T Consensus       100 d~~lv~~~~~~s~e~i~~L~~~G-v~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~  178 (594)
T PLN02815        100 DEETVRVVCTEGPERVKELIAMG-ASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHF  178 (594)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhC-CeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceE
Confidence            221        223455554322 22221111  101111111         113456888888888764 899999999


Q ss_pred             cceeEEcCCC-c--EEEEE-------------eCCEEEecCCC
Q psy2240         154 ASEVLYHGDG-S--VKGIA-------------TGDVGIAKDGS  180 (182)
Q Consensus       154 v~~i~~~~~g-~--~~~v~-------------~~~~vi~adG~  180 (182)
                      +++|..++++ .  ++|+.             ++.+|++++|.
T Consensus       179 ~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~  221 (594)
T PLN02815        179 AIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA  221 (594)
T ss_pred             hheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence            9999875444 2  56543             23456677664

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.51  E-value=4.8e-13  Score=101.38  Aligned_cols=55  Identities=16%  Similarity=0.106  Sum_probs=39.5

Q ss_pred             cccchHHHHHHHHHHHHH----cC--cEEecCCccceeEEcCCCc-EE----E-EEeCCEEEecCCC
Q psy2240         126 YVVRLGHVVKWLGEQAEA----MG--VEIYPGIPASEVLYHGDGS-VK----G-IATGDVGIAKDGS  180 (182)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~----~g--v~i~~~~~v~~i~~~~~g~-~~----~-v~~~~~vi~adG~  180 (182)
                      ..+++..+.+.|.+.+++    .|  ++|+++++|++|+.++++. .+    + +.++.+|++|++.
T Consensus       206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G~i~A~~VVvaAG~~  272 (497)
T PTZ00383        206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGEIRARFVVVSACGY  272 (497)
T ss_pred             EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCCEEEeCEEEECcChh
Confidence            478999999999999988    77  7899999999998753332 22    1 3344555666553

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.51  E-value=1.1e-12  Score=102.59  Aligned_cols=140  Identities=20%  Similarity=0.162  Sum_probs=76.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC-Ccc-ccccccC--------hhHHhhhhhhHHhcCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG-GHI-LSGAVID--------PIALNELLPDWKDLGA   90 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~-g~~-~~~~~~~--------~~~~~~~~~~~~~~~~   90 (182)
                      .++||+|||+|.+|+++|+.+++      .|.+|+||||....+ +.+ .+.+.+.        .......+.+....+.
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae------~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~  107 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGE------LGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGD  107 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHH------cCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcC
Confidence            46899999999999999999999      899999999876554 222 2222221        1112222333333322


Q ss_pred             CCCcc--------chhhhHHHHHhhccCCCCCCCCC--CCCCCCccc---------cchHHH----HHHHHHHHHHcCcE
Q psy2240          91 PLNTP--------VHEDKFAYLTKSKRIGIPILPGM--PMNNHGNYV---------VRLGHV----VKWLGEQAEAMGVE  147 (182)
Q Consensus        91 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~l----~~~l~~~~~~~gv~  147 (182)
                      .+.+.        .....+.|+...+ ..+....+.  .....++..         .....+    .+.|.+.+++.|++
T Consensus       108 ~~~d~~lv~~l~~~s~~~i~wL~~~G-V~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~  186 (640)
T PRK07573        108 FRAREANVYRLAEVSVNIIDQCVAQG-VPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVK  186 (640)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhcC-CccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCE
Confidence            22221        1224455554322 222111000  000000000         011223    35666677788999


Q ss_pred             EecCCccceeEEcCCCcEEEE
Q psy2240         148 IYPGIPASEVLYHGDGSVKGI  168 (182)
Q Consensus       148 i~~~~~v~~i~~~~~g~~~~v  168 (182)
                      |++++.++++..+ ++.++|+
T Consensus       187 i~~~t~v~~Li~d-~g~V~GV  206 (640)
T PRK07573        187 MYTRTEMLDLVVV-DGRARGI  206 (640)
T ss_pred             EEeceEEEEEEEe-CCEEEEE
Confidence            9999999999864 4666654

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.51  E-value=4.7e-13  Score=103.28  Aligned_cols=43  Identities=40%  Similarity=0.665  Sum_probs=38.8

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ++.++||+|||+|.+|+++|+.+++      .|.+|+|||+.+..+|.+
T Consensus         3 ~d~~~DvvIiG~G~aGl~aA~~~a~------~G~~v~liEk~~~~gG~~   45 (557)
T PRK12844          3 WDETYDVVVVGSGGGGMCAALAAAD------SGLEPLIVEKQDKVGGST   45 (557)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCcee
Confidence            4568899999999999999999999      899999999998777764

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.51  E-value=1.1e-12  Score=102.44  Aligned_cols=42  Identities=33%  Similarity=0.540  Sum_probs=37.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      .++||+|||||+.|+++|+.|++      +|++|+||||.....|.+.
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~------rGl~V~LvE~~d~a~GtSs  111 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAAT------RGLRVGLVEREDFSSGTSS  111 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHh------CCCEEEEEeccccCCCccc
Confidence            45899999999999999999999      9999999999976666553

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.50  E-value=2.5e-12  Score=99.84  Aligned_cols=44  Identities=36%  Similarity=0.534  Sum_probs=39.2

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ++.++||+|||+|++|+++|+.+++      .|.+|+||||.+..+|.+.
T Consensus         9 ~~~~~dvvvvG~G~aG~~aa~~~~~------~g~~v~~iek~~~~gg~~~   52 (581)
T PRK06134          9 PDLECDVLVIGSGAAGLSAAVTAAW------HGLKVIVVEKDPVFGGTTA   52 (581)
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCCcccc
Confidence            5668999999999999999999999      8999999999987777553

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.50  E-value=1.9e-12  Score=100.38  Aligned_cols=47  Identities=43%  Similarity=0.627  Sum_probs=41.2

Q ss_pred             cccccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        16 ~~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      +..++.++||+|||+|++|+++|+.+++      .|.+|+||||....+|.+.
T Consensus        10 ~~~~~~~~dvvvvG~G~aG~~aa~~~~~------~g~~v~l~ek~~~~gg~~~   56 (578)
T PRK12843         10 PERWDAEFDVIVIGAGAAGMSAALFAAI------AGLKVLLVERTEYVGGTTA   56 (578)
T ss_pred             CCCCCCCCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCCccc
Confidence            4456678899999999999999999999      8999999999988777653

>KOG2820|consensus

Probab=99.50  E-value=1.4e-12  Score=91.73  Aligned_cols=147  Identities=21%  Similarity=0.303  Sum_probs=86.3

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccc---cC--------hhHHhhhhhhHH
Q psy2240          18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV---ID--------PIALNELLPDWK   86 (182)
Q Consensus        18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~---~~--------~~~~~~~~~~~~   86 (182)
                      .+.+..|++|||+|+-|+++|++|++      +|.++++||+.+.+-...++.+.   +.        .+...+.+..|+
T Consensus         3 ~~~~~~~viiVGAGVfG~stAyeLaK------~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~   76 (399)
T KOG2820|consen    3 EMVKSRDVIIVGAGVFGLSTAYELAK------RGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWR   76 (399)
T ss_pred             ccccceeEEEEcccccchHHHHHHHh------cCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHH
Confidence            35567899999999999999999999      89999999999876543332221   11        112233345565


Q ss_pred             hcCCCCCccc----------hhh--hHHHHHh---hcc------------CCCC---CCCC--CCCCCCCccccchHHHH
Q psy2240          87 DLGAPLNTPV----------HED--KFAYLTK---SKR------------IGIP---ILPG--MPMNNHGNYVVRLGHVV  134 (182)
Q Consensus        87 ~~~~~~~~~~----------~~~--~~~~~~~---~~~------------~~~~---~~~~--~~~~~~~~~~~~~~~l~  134 (182)
                      .........+          ..+  .+..+..   ...            ..++   .+++  .......+.++...+-.
T Consensus        77 ~~~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~ksl  156 (399)
T KOG2820|consen   77 NLPEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSL  156 (399)
T ss_pred             hChhhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHH
Confidence            5432211111          010  1110000   000            0011   0111  01122235577888889


Q ss_pred             HHHHHHHHHcCcEEecCCccceeEEc-CCCcEEEEEe
Q psy2240         135 KWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGIAT  170 (182)
Q Consensus       135 ~~l~~~~~~~gv~i~~~~~v~~i~~~-~~g~~~~v~~  170 (182)
                      ..|.+.+++.|+.++.+.+|+.+... +.+..+.|.+
T Consensus       157 k~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~T  193 (399)
T KOG2820|consen  157 KALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQT  193 (399)
T ss_pred             HHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEe
Confidence            99999999999999999999988753 3344444444

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.49  E-value=1.9e-12  Score=100.01  Aligned_cols=41  Identities=37%  Similarity=0.600  Sum_probs=37.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC--CCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA--EVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~--~~~g~~   67 (182)
                      .++||||||+|.+|+++|+.+++      .|.+|+||||.+  ..+|.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~------~G~~VivlEK~~~~~~GG~s   45 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELAD------AGKRVLLLDQENEANLGGQA   45 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCCCCCCCCce
Confidence            56899999999999999999999      899999999998  566654

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.49  E-value=1.7e-12  Score=98.63  Aligned_cols=41  Identities=20%  Similarity=0.242  Sum_probs=34.9

Q ss_pred             CCccccchHHHHHHHHHHHHHcC-cEEecCCccceeEEcCCC
Q psy2240         123 HGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVLYHGDG  163 (182)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~~~~~g  163 (182)
                      +.+..+++..+.+.|.+.+++.| ++|+++++|++++.++++
T Consensus       175 p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg  216 (494)
T PRK05257        175 EIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDG  216 (494)
T ss_pred             CCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCC
Confidence            34567899999999999998876 899999999999875555

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.49  E-value=1.6e-12  Score=100.87  Aligned_cols=140  Identities=21%  Similarity=0.151  Sum_probs=78.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-------hhHHhhhhhhHHhcCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-------PIALNELLPDWKDLGAPL   92 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~   92 (182)
                      .++||+|||+|++|+++|+.+++      . .+|+|+||.+..++.+. +.+.+.       .......+.+....+..+
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~------~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~   76 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGP------R-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYL   76 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHh------C-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCC
Confidence            46899999999999999999987      5 89999999976555332 222211       111111111222222222


Q ss_pred             Cccc--------hhhhHHHHHhhccCCCCCCCCCC--CC--------------CCCccc--cchHHHHHHHHHHHHHcCc
Q psy2240          93 NTPV--------HEDKFAYLTKSKRIGIPILPGMP--MN--------------NHGNYV--VRLGHVVKWLGEQAEAMGV  146 (182)
Q Consensus        93 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~--------------~~~~~~--~~~~~l~~~l~~~~~~~gv  146 (182)
                      .+..        ....+.|+.. ....+....+..  ..              ....+.  .....+...|.+.+++.|+
T Consensus        77 ~d~~~v~~~~~~~~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv  155 (583)
T PRK08205         77 VDQDAAEIMAKEAIDAVLDLEK-MGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGV  155 (583)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-cCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCC
Confidence            2211        1233444432 122221111100  00              000011  1345788899999988999


Q ss_pred             EEecCCccceeEEcCC---CcEEEE
Q psy2240         147 EIYPGIPASEVLYHGD---GSVKGI  168 (182)
Q Consensus       147 ~i~~~~~v~~i~~~~~---g~~~~v  168 (182)
                      ++++++.|+++..+++   +.++|+
T Consensus       156 ~i~~~~~v~~Li~~~~~~~g~v~Gv  180 (583)
T PRK08205        156 EFFNEFYVLDLLLTETPSGPVAAGV  180 (583)
T ss_pred             EEEeCCEEEEEEecCCccCCcEEEE
Confidence            9999999999986442   666554

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.49  E-value=9.2e-13  Score=101.74  Aligned_cols=42  Identities=43%  Similarity=0.632  Sum_probs=37.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..++||+|||+|++|+++|+.+++      .|++|+||||.+..+|.+
T Consensus         5 ~~~~DvvVvG~G~aG~~aA~~aa~------~G~~v~llEk~~~~gG~~   46 (557)
T PRK07843          5 VQEYDVVVVGSGAAGMVAALTAAH------RGLSTVVVEKAPHYGGST   46 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH------CCCCEEEEeCCCCCCccc
Confidence            457899999999999999999999      899999999998777654

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.49  E-value=4.9e-13  Score=103.67  Aligned_cols=141  Identities=26%  Similarity=0.278  Sum_probs=78.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccCh--------hHHhhhhhhHHhcCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDP--------IALNELLPDWKDLGAP   91 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~--------~~~~~~~~~~~~~~~~   91 (182)
                      .++||+|||||++|+++|+.+++.    ++|.+|+||||.+..++.+. +.+.+..        ......+.+.......
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~   77 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRL----DPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDY   77 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHh----cCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCC
Confidence            468999999999999999999971    13589999999976565432 2222211        1111112222222222


Q ss_pred             CCccc--------hhhhHHHHHhhccCCCCCCCCCCC--CCCCc-------cc--cchHHHHHHHHHHHHHcCcEEecCC
Q psy2240          92 LNTPV--------HEDKFAYLTKSKRIGIPILPGMPM--NNHGN-------YV--VRLGHVVKWLGEQAEAMGVEIYPGI  152 (182)
Q Consensus        92 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~--~~~~~l~~~l~~~~~~~gv~i~~~~  152 (182)
                      +.+..        ....+.|+.. ....++...+...  ...++       +.  .....+...|.+.+++.|+++++++
T Consensus        78 l~d~~~v~~l~~~a~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t  156 (575)
T PRK05945         78 LADQDAVAILTQEAPDVIIDLEH-LGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEW  156 (575)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH-cCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCc
Confidence            22211        1233444432 2222221111100  00000       11  1235788899998988899999999


Q ss_pred             ccceeEEcCCCcEEE
Q psy2240         153 PASEVLYHGDGSVKG  167 (182)
Q Consensus       153 ~v~~i~~~~~g~~~~  167 (182)
                      .|+++..+ ++.+.|
T Consensus       157 ~v~~L~~~-~g~v~G  170 (575)
T PRK05945        157 YVMRLILE-DNQAKG  170 (575)
T ss_pred             EEEEEEEE-CCEEEE
Confidence            99999763 455544

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.49  E-value=9.9e-13  Score=98.52  Aligned_cols=56  Identities=25%  Similarity=0.355  Sum_probs=41.3

Q ss_pred             CccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE------EeCCEEEecCCC
Q psy2240         124 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI------ATGDVGIAKDGS  180 (182)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------~~~~~vi~adG~  180 (182)
                      ....+++..+.+.|.+.+++.|++|+++++|++++.++ +.+.++      ...+.||.|.|.
T Consensus       194 ~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~~~~~a~~VV~a~G~  255 (416)
T PRK00711        194 NDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGGGVITADAYVVALGS  255 (416)
T ss_pred             CcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCCcEEeCCEEEECCCc
Confidence            34567888999999999999999999999999998644 333333      234666666664

>PLN02661 Putative thiazole synthesis

Probab=99.48  E-value=1.8e-12  Score=93.22  Aligned_cols=118  Identities=20%  Similarity=0.323  Sum_probs=69.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      .++||+|||||++|+++|+.|++.     .|++|+||||...++|..+.++.+.....                 +....
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~~~~GGG~~~gg~l~~~~v-----------------v~~~a  148 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQSVSPGGGAWLGGQLFSAMV-----------------VRKPA  148 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecCcccccceeeCcccccccc-----------------cccHH
Confidence            357999999999999999999971     38999999999877764432222110000                 00001


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEE
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGI  168 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v  168 (182)
                      ..++.. ....++....+      ....+...+...|.+.+.+ .|++++.++.++++..+ ++.+.|+
T Consensus       149 ~e~LeE-lGV~fd~~dgy------~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGV  209 (357)
T PLN02661        149 HLFLDE-LGVPYDEQENY------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGV  209 (357)
T ss_pred             HHHHHH-cCCCcccCCCe------eEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEE
Confidence            112211 11111111000      1111445666778876654 78999999999999873 4555443

>KOG1399|consensus

Probab=99.48  E-value=1.2e-12  Score=97.58  Aligned_cols=134  Identities=20%  Similarity=0.250  Sum_probs=84.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      ...+++|||||++||.+|.+|.+      .|++++++||.+..||.+.-.....                    ......
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~------~g~~v~vfEr~~~iGGlW~y~~~~~--------------------~~~ss~   58 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLR------EGHEVVVFERTDDIGGLWKYTENVE--------------------VVHSSV   58 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHH------CCCCceEEEecCCccceEeecCccc--------------------ccccch
Confidence            45689999999999999999999      8999999999999987553110000                    000000


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCC-CccccchHHHHHHHHHHHHHcCc--EEecCCccceeEEcCC-CcEEEE--------
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNH-GNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGD-GSVKGI--------  168 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~gv--~i~~~~~v~~i~~~~~-g~~~~v--------  168 (182)
                      +..+..+.....-.++++|.... ..+..+..++.++|.+.|++.+.  .|.++++|..+....+ -|.+..        
T Consensus        59 Y~~l~tn~pKe~~~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~  138 (448)
T KOG1399|consen   59 YKSLRTNLPKEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIE  138 (448)
T ss_pred             hhhhhccCChhhhcCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCccee
Confidence            11111111111112233343333 24456666999999999999874  6889998888876442 333322        


Q ss_pred             -EeCCEEEecCCC
Q psy2240         169 -ATGDVGIAKDGS  180 (182)
Q Consensus       169 -~~~~~vi~adG~  180 (182)
                       ...|.|+.|.|+
T Consensus       139 ~~ifd~VvVctGh  151 (448)
T KOG1399|consen  139 EEIFDAVVVCTGH  151 (448)
T ss_pred             EEEeeEEEEcccC
Confidence             123788888887

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.47  E-value=1.3e-12  Score=102.00  Aligned_cols=139  Identities=21%  Similarity=0.229  Sum_probs=79.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-ccccc----C----hhHHhhhhhhHHhcCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVI----D----PIALNELLPDWKDLGAP   91 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~----~----~~~~~~~~~~~~~~~~~   91 (182)
                      .++||+|||+|++|+++|+.+++      .|.+|+||||.+..++.+. +.+.+    .    .......+.+....+..
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae------~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~   80 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARE------RGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKF   80 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHH------CCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhcc
Confidence            46899999999999999999999      8999999999986655432 22211    0    11222223232222222


Q ss_pred             CCcc--------chhhhHHHHHhhccCCCCCCCCC--CCCCCCccc---------cchHHHHHHHHHHHHHc--------
Q psy2240          92 LNTP--------VHEDKFAYLTKSKRIGIPILPGM--PMNNHGNYV---------VRLGHVVKWLGEQAEAM--------  144 (182)
Q Consensus        92 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~l~~~l~~~~~~~--------  144 (182)
                      +.+.        .....+.|+.. ....+....+.  .....++..         .....+...|.+.+++.        
T Consensus        81 l~d~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~  159 (626)
T PRK07803         81 LNNWRMAELHAKEAPDRVWELET-YGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAEL  159 (626)
T ss_pred             CCcHHHHHHHHHHhHHHHHHHHH-CCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccc
Confidence            2222        12233444433 22222211110  000001110         12356888888888765        


Q ss_pred             C-----cEEecCCccceeEEcCCCcEEE
Q psy2240         145 G-----VEIYPGIPASEVLYHGDGSVKG  167 (182)
Q Consensus       145 g-----v~i~~~~~v~~i~~~~~g~~~~  167 (182)
                      |     +++++++.|+++..+ ++.+.|
T Consensus       160 G~~~~~v~i~~~~~v~~L~~~-~g~v~G  186 (626)
T PRK07803        160 GDYEARIKVFAECTITELLKD-GGRIAG  186 (626)
T ss_pred             cCCcCceEEEeCCEEEEEEEE-CCEEEE
Confidence            6     999999999999863 455554

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.47  E-value=1.2e-12  Score=97.15  Aligned_cols=133  Identities=26%  Similarity=0.279  Sum_probs=76.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHHH
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAY  103 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (182)
                      ||+|||||++|+++|+.|++      .|++|+|||+.+..++....+ .. ...+       ...+  +......   .|
T Consensus         1 DviIiGaG~AGl~~A~~la~------~g~~v~liE~~~~~~~~~~~~-~~-~~~~-------~~~~--~~~~~~~---~~   60 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELAR------PGLRVQLIEPHPPIPGNHTYG-VW-DDDL-------SDLG--LADCVEH---VW   60 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHh------CCCeEEEEccCCCCCCCcccc-cc-Hhhh-------hhhc--hhhHHhh---cC
Confidence            89999999999999999999      899999999987655321100 00 0000       0000  0000000   00


Q ss_pred             HHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC-cEEE-----EEeCCEEEec
Q psy2240         104 LTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG-SVKG-----IATGDVGIAK  177 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g-~~~~-----v~~~~~vi~a  177 (182)
                       .....+..+...  .........+++..+.+.|.+.+.+.|++++ ..+|+++..++++ ..+.     ....++||.|
T Consensus        61 -~~~~~~~~~~~~--~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A  136 (388)
T TIGR01790        61 -PDVYEYRFPKQP--RKLGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDA  136 (388)
T ss_pred             -CCceEEecCCcc--hhcCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEEC
Confidence             000000000000  0011223468999999999999988899886 5578888764222 2221     3456899999


Q ss_pred             CCC
Q psy2240         178 DGS  180 (182)
Q Consensus       178 dG~  180 (182)
                      +|.
T Consensus       137 ~G~  139 (388)
T TIGR01790       137 RGF  139 (388)
T ss_pred             CCC
Confidence            995

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.47  E-value=6e-12  Score=97.68  Aligned_cols=42  Identities=36%  Similarity=0.627  Sum_probs=38.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..++||+|||+|++|+++|+.+++      +|.+|+||||.+..+|.+
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~------~G~~v~llEk~~~~gG~~   48 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARK------LGLDVVVLEKEPVFGGTT   48 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH------cCCeEEEEecCCCCCCcc
Confidence            347899999999999999999999      899999999999877765

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.47  E-value=2.1e-12  Score=95.17  Aligned_cols=39  Identities=31%  Similarity=0.535  Sum_probs=34.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      +||+|||||++|+++|++|++      +|.+|+|||+.....|.+
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~------~G~~V~vle~~~~~~gaS   39 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAAR------RGLSVTVIERSSRAQGAS   39 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCCCCCcc
Confidence            589999999999999999999      899999999987544444

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.47  E-value=3.1e-12  Score=96.82  Aligned_cols=38  Identities=11%  Similarity=0.095  Sum_probs=32.2

Q ss_pred             CCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEc
Q psy2240         123 HGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYH  160 (182)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~  160 (182)
                      +.+..++...+.+.|.+.+.+ .|++++++++|++++.+
T Consensus       176 p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~  214 (497)
T PRK13339        176 DEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERL  214 (497)
T ss_pred             CCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEC
Confidence            345678999999999999865 58999999999999875

>PTZ00367 squalene epoxidase; Provisional

Probab=99.47  E-value=2.9e-13  Score=104.03  Aligned_cols=125  Identities=19%  Similarity=0.236  Sum_probs=67.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh--HHhhhhhhHHhcCCCCCccch
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   97 (182)
                      +.++||+|||||++|+++|+.|++      .|++|+||||.+.....-..+..+.+.  .+.+.++.|.... .......
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar------~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~-~i~~~~~  103 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSK------QGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAE-GIGMPCF  103 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHh------cCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHh-hcCccee
Confidence            356899999999999999999999      899999999986211000122223332  2333344443321 1111111


Q ss_pred             hhhHHHHHhhc-cCCCCCCCCCCCCCCCccccchHHHHHHHHHHH---HHcCcEEecCCccceeEE
Q psy2240          98 EDKFAYLTKSK-RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQA---EAMGVEIYPGIPASEVLY  159 (182)
Q Consensus        98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~gv~i~~~~~v~~i~~  159 (182)
                      .  +..+...+ ....+.    . ....+..+++..+.+.|.+.+   ...+++++.. +|+++..
T Consensus       104 ~--~~v~~~~G~~~~i~~----~-~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~  161 (567)
T PTZ00367        104 G--YVVFDHKGKQVKLPY----G-AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLE  161 (567)
T ss_pred             e--eEEEECCCCEEEecC----C-CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEecc
Confidence            0  00000001 000110    0 111245567888888898887   3457888654 6766643

>KOG1298|consensus

Probab=99.47  E-value=1.3e-13  Score=98.42  Aligned_cols=144  Identities=26%  Similarity=0.383  Sum_probs=82.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHH---hcCCCCCc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWK---DLGAPLNT   94 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~   94 (182)
                      +..+||+|||+|++|+++|+.|++      .|.+|.||||+-....+. -|..+.+...  ...++..+   ..+.+...
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~k------dGRrVhVIERDl~EPdRi-vGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~  115 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAK------DGRRVHVIERDLSEPDRI-VGELLQPGGYLALSKLGLEDCVEGIDAQRVT  115 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhh------CCcEEEEEecccccchHH-HHHhcCcchhHHHHHhCHHHHhhcccceEee
Confidence            456899999999999999999999      899999999985322111 1111222111  11111111   11111000


Q ss_pred             cchhhhHHHHH--hhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEEEe-
Q psy2240          95 PVHEDKFAYLT--KSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIAT-  170 (182)
Q Consensus        95 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v~~-  170 (182)
                           .+..+.  ++...+++. ..++ ..+.+..++..++.+-|++.+-. .++++..+ .|+++.+ +++.+.||.. 
T Consensus       116 -----Gy~ifk~gk~v~~pyP~-~~f~-~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLle-e~gvvkGV~yk  186 (509)
T KOG1298|consen  116 -----GYAIFKDGKEVDLPYPL-KNFP-SDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLE-EEGVVKGVTYK  186 (509)
T ss_pred             -----eeEEEeCCceeeccCCC-cCCC-CCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHh-ccCeEEeEEEe
Confidence                 000111  111122221 1111 22225677788999999998755 68888776 6777765 5567777654 


Q ss_pred             ----------CCEEEecCC
Q psy2240         171 ----------GDVGIAKDG  179 (182)
Q Consensus       171 ----------~~~vi~adG  179 (182)
                                +.+.|-|||
T Consensus       187 ~k~gee~~~~ApLTvVCDG  205 (509)
T KOG1298|consen  187 NKEGEEVEAFAPLTVVCDG  205 (509)
T ss_pred             cCCCceEEEecceEEEecc
Confidence                      367888888

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.47  E-value=3.1e-12  Score=99.23  Aligned_cols=136  Identities=23%  Similarity=0.253  Sum_probs=75.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-------h-hHHhhhhhhHHhcCCCCCc
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-------P-IALNELLPDWKDLGAPLNT   94 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-------~-~~~~~~~~~~~~~~~~~~~   94 (182)
                      ||+|||+|++|+++|+.+++      .|.+|+||||.+..++.+. +.+.+.       + ......+.+....+..+.+
T Consensus         1 DVlVVG~G~AGl~AA~~aae------~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d   74 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAK------AGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLAD   74 (566)
T ss_pred             CEEEECccHHHHHHHHHHHH------CCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCC
Confidence            89999999999999999999      8999999999986554432 111110       1 1111111111111111211


Q ss_pred             c--------chhhhHHHHHhhccCCCCCCCCC--CCCCCCc-------c--ccchHHHHHHHHHHHHHcCcEEecCCccc
Q psy2240          95 P--------VHEDKFAYLTKSKRIGIPILPGM--PMNNHGN-------Y--VVRLGHVVKWLGEQAEAMGVEIYPGIPAS  155 (182)
Q Consensus        95 ~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~--~~~~~~l~~~l~~~~~~~gv~i~~~~~v~  155 (182)
                      .        ...+.+.|+... ...+....+.  .....++       +  ......+...|.+.+++.|+++++++.++
T Consensus        75 ~~~v~~~~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~  153 (566)
T TIGR01812        75 QDAVEYMCQEAPKAILELEHW-GVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFAL  153 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEE
Confidence            1        112334454332 1222111110  0000000       0  11234678888888888899999999999


Q ss_pred             eeEEcCCCcEEE
Q psy2240         156 EVLYHGDGSVKG  167 (182)
Q Consensus       156 ~i~~~~~g~~~~  167 (182)
                      ++..+ ++.+.|
T Consensus       154 ~L~~~-~g~v~G  164 (566)
T TIGR01812       154 DLIHD-DGRVRG  164 (566)
T ss_pred             EEEEe-CCEEEE
Confidence            99874 466654

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.46  E-value=5.5e-13  Score=98.42  Aligned_cols=133  Identities=22%  Similarity=0.232  Sum_probs=77.1

Q ss_pred             cEEEECCChHHHHHHHHH--HHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          24 DVVIVGGGPAGMAAAIRL--KQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l--~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      ||+|||||++|+++|++|  ++      .|.+|+|||+.+...-......+           .|......    . ...+
T Consensus         1 DviIvGaGpAGlslA~~l~~~~------~g~~Vllid~~~~~~~~~~~tW~-----------~~~~~~~~----~-~~~v   58 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADAR------PGLSVLLIDPKPKPPWPNDRTWC-----------FWEKDLGP----L-DSLV   58 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcC------CCCEEEEEcCCccccccCCcccc-----------cccccccc----h-HHHH
Confidence            899999999999999999  55      79999999998765211011101           11110000    0 0000


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEe
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIA  176 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~  176 (182)
                      ........+..+.... .........+++..|.+.|.+.+. .+..++.+++|++|+.++++..+.     ...+++||+
T Consensus        59 ~~~w~~~~v~~~~~~~-~~~~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvD  136 (374)
T PF05834_consen   59 SHRWSGWRVYFPDGSR-ILIDYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVD  136 (374)
T ss_pred             heecCceEEEeCCCce-EEcccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEE
Confidence            0000000000000000 001122458999999999999998 455677789999998755433221     345688999


Q ss_pred             cCCC
Q psy2240         177 KDGS  180 (182)
Q Consensus       177 adG~  180 (182)
                      |+|.
T Consensus       137 a~g~  140 (374)
T PF05834_consen  137 ARGP  140 (374)
T ss_pred             CCCc
Confidence            9985

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.45  E-value=5.8e-12  Score=95.50  Aligned_cols=149  Identities=26%  Similarity=0.287  Sum_probs=81.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccC-----hhHHhhhhhhHHhcCCCCCccc-
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID-----PIALNELLPDWKDLGAPLNTPV-   96 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-   96 (182)
                      .||+|||+|++|+++|+.+++      .|.+|+||||.+..+....+.+.+.     .......+.++...+....++. 
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae------~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~   75 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAK------KGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEV   75 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHH------CCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHH
Confidence            599999999999999999999      8999999999864322112222221     1122222222222222222111 


Q ss_pred             -------hhhhHHHHHhhccCCCCC--CCCCCCCCCC--ccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcE
Q psy2240          97 -------HEDKFAYLTKSKRIGIPI--LPGMPMNNHG--NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV  165 (182)
Q Consensus        97 -------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~  165 (182)
                             ..+.+.|+... ...+..  ......+...  ........+.+.|.+.+++.|++++++ .++++.. +++.+
T Consensus        76 v~~~~~~~~~~i~~L~~~-Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v  152 (466)
T PRK08401         76 VWNVISKSSEAYDFLTSL-GLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKA  152 (466)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEE
Confidence                   12233444332 222211  0000101000  001124578899999999899999876 7888875 45566


Q ss_pred             EEE-------EeCCEEEecCCC
Q psy2240         166 KGI-------ATGDVGIAKDGS  180 (182)
Q Consensus       166 ~~v-------~~~~~vi~adG~  180 (182)
                      +++       .++.+|++++|.
T Consensus       153 ~Gv~~~g~~i~a~~VVLATGG~  174 (466)
T PRK08401        153 YGVFLDGELLKFDATVIATGGF  174 (466)
T ss_pred             EEEEECCEEEEeCeEEECCCcC
Confidence            553       344566666664

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.45  E-value=3.5e-12  Score=100.00  Aligned_cols=40  Identities=25%  Similarity=0.411  Sum_probs=36.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      .++||+|||+|.+|+++|+.+++      .|.+|+||||.+..++.
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae------~G~~VivleK~~~~~s~   43 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQ------RGLDTIVLSLVPAKRSH   43 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHH------cCCCEEEEeCCCCCCcc
Confidence            46899999999999999999999      89999999999876554

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.45  E-value=3.4e-12  Score=99.13  Aligned_cols=139  Identities=20%  Similarity=0.203  Sum_probs=77.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCC---ceEEEEecCCCCCCccc-cccccC----h---hHHhhhhhhHHhcC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE---LKVCLVEKAAEVGGHIL-SGAVID----P---IALNELLPDWKDLG   89 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g---~~v~vlE~~~~~~g~~~-~~~~~~----~---~~~~~~~~~~~~~~   89 (182)
                      .++||+|||+|++|+++|+.+++      .|   .+|+||||.+..++.+. +++.+.    .   ......+.+....+
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~------~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g   77 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAE------RSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGS   77 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHH------hCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhh
Confidence            36899999999999999999999      77   89999999987665443 222211    1   11112222222222


Q ss_pred             CCCCccc--------hhhhHHHHHhhccCCCCCCCCCC--CCCCCcccc---------chHHHHHHHHHHHHH-cCcEEe
Q psy2240          90 APLNTPV--------HEDKFAYLTKSKRIGIPILPGMP--MNNHGNYVV---------RLGHVVKWLGEQAEA-MGVEIY  149 (182)
Q Consensus        90 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~l~~~l~~~~~~-~gv~i~  149 (182)
                      ..+.++.        ..+.+.|+... ...+....+..  ....++...         ....+...|.+.+.+ .+++++
T Consensus        78 ~~~~d~~lv~~~~~~s~~~i~~L~~~-Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~  156 (577)
T PRK06069         78 DFLADQDAVEVFVREAPEEIRFLDHW-GVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFY  156 (577)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHc-CCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEE
Confidence            2222111        12334555432 22221111100  000011101         234578888888766 689999


Q ss_pred             cCCccceeEEcCCCcEEE
Q psy2240         150 PGIPASEVLYHGDGSVKG  167 (182)
Q Consensus       150 ~~~~v~~i~~~~~g~~~~  167 (182)
                      +++.++++..+ ++.++|
T Consensus       157 ~~~~v~~Li~~-~g~v~G  173 (577)
T PRK06069        157 DEHFVTSLIVE-NGVFKG  173 (577)
T ss_pred             ECCEEEEEEEE-CCEEEE
Confidence            99999999763 455554

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.44  E-value=2.5e-12  Score=93.82  Aligned_cols=139  Identities=24%  Similarity=0.346  Sum_probs=77.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEE-ecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLV-EKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vl-E~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ||+|||||.+|+.+|+.+++      .|.+|+|+ ++....+..+ +...+.......+....+..+         ..+.
T Consensus         1 DViVVGgG~AG~eAA~aaAr------~G~~V~Lit~~~d~i~~~~-Cnpsigg~~kg~L~~Eidalg---------g~m~   64 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAAR------MGAKVLLITHNTDTIGEMS-CNPSIGGIAKGHLVREIDALG---------GLMG   64 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHH------TT--EEEEES-GGGTT--S-SSSEEESTTHHHHHHHHHHTT----------SHH
T ss_pred             CEEEECCCHHHHHHHHHHHH------CCCCEEEEeeccccccccc-chhhhccccccchhHHHhhhh---------hHHH
Confidence            89999999999999999999      89999999 3433343322 222211111111111122221         1111


Q ss_pred             HHHhhccCCCCCC--CCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEEEe-------CC
Q psy2240         103 YLTKSKRIGIPIL--PGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIAT-------GD  172 (182)
Q Consensus       103 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v~~-------~~  172 (182)
                      .........+..+  ...|.-......+++..+.+++.+.+++ .+++|+ +.+|++|.. +++.+.+|.+       ++
T Consensus        65 ~~aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~  142 (392)
T PF01134_consen   65 RAADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEAD  142 (392)
T ss_dssp             HHHHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEEC
T ss_pred             HHHhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecC
Confidence            1222222211111  1111111114589999999999999988 678886 579999986 5678888776       47


Q ss_pred             EEEecCCC
Q psy2240         173 VGIAKDGS  180 (182)
Q Consensus       173 ~vi~adG~  180 (182)
                      .||-|.|.
T Consensus       143 ~vVlaTGt  150 (392)
T PF01134_consen  143 AVVLATGT  150 (392)
T ss_dssp             EEEE-TTT
T ss_pred             EEEEeccc
Confidence            88888875

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.44  E-value=5.5e-12  Score=97.88  Aligned_cols=141  Identities=20%  Similarity=0.198  Sum_probs=79.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCCCc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPLNT   94 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~   94 (182)
                      .++||+|||+|++|+++|+.+++.    ++|.+|+||||.+..++.+. +++.+.     .......+.+....+..+.+
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~----g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d   78 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEA----NPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCE   78 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCC
Confidence            468999999999999999999871    13589999999987666543 222211     11222223333333322222


Q ss_pred             cc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCCcc------c---cchHHHHHHHHHHHHHc-CcEEecCCcc
Q psy2240          95 PV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHGNY------V---VRLGHVVKWLGEQAEAM-GVEIYPGIPA  154 (182)
Q Consensus        95 ~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~---~~~~~l~~~l~~~~~~~-gv~i~~~~~v  154 (182)
                      ..        ..+.+.|+.. ....+....+.  .....++.      .   -....+...|.+.+.+. ++++++++.+
T Consensus        79 ~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v  157 (582)
T PRK09231         79 QDVVEYFVHHCPTEMTQLEQ-WGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFV  157 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEE
Confidence            11        1234455543 22222211110  00000110      0   12346788888887664 7999999999


Q ss_pred             ceeEEcCCCcEEE
Q psy2240         155 SEVLYHGDGSVKG  167 (182)
Q Consensus       155 ~~i~~~~~g~~~~  167 (182)
                      +++..+ ++.+.|
T Consensus       158 ~~Li~~-~g~v~G  169 (582)
T PRK09231        158 LDILVD-DGHVRG  169 (582)
T ss_pred             EEEEEe-CCEEEE
Confidence            999874 566655

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.44  E-value=5.8e-12  Score=96.43  Aligned_cols=150  Identities=17%  Similarity=0.164  Sum_probs=84.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCCCc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPLNT   94 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~   94 (182)
                      .++||+|||+|.+|+++|+.+++       |.+|+||||.+..++.+. +.+.+.     .......+.+....+..+.+
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-------g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d   74 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-------EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNN   74 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-------CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCC
Confidence            36899999999999999999964       789999999987776553 333221     12233333333333322222


Q ss_pred             cc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCCc------c----ccchHHHHHHHHHHHHHcCcEEecCCcc
Q psy2240          95 PV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHGN------Y----VVRLGHVVKWLGEQAEAMGVEIYPGIPA  154 (182)
Q Consensus        95 ~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~----~~~~~~l~~~l~~~~~~~gv~i~~~~~v  154 (182)
                      ..        ..+.+.|+.. ....++...+.  .....+.      .    ......+.+.|.+.++ .|++|++++.+
T Consensus        75 ~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v  152 (510)
T PRK08071         75 ERAVRYLVEEGPKEIQELIE-NGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMV  152 (510)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEh
Confidence            11        1233444433 22222211000  0000000      0    1123467888888776 59999999999


Q ss_pred             ceeEEcCCCcEEEEE------------eCCEEEecCCC
Q psy2240         155 SEVLYHGDGSVKGIA------------TGDVGIAKDGS  180 (182)
Q Consensus       155 ~~i~~~~~g~~~~v~------------~~~~vi~adG~  180 (182)
                      +++.. +++.+.++.            ++.+|++++|.
T Consensus       153 ~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~  189 (510)
T PRK08071        153 IDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGC  189 (510)
T ss_pred             hheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCC
Confidence            99976 345555432            24556666664

>KOG2614|consensus

Probab=99.44  E-value=7.7e-13  Score=95.38  Aligned_cols=39  Identities=38%  Similarity=0.652  Sum_probs=34.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      +.+|+|||||++|+++|+.|++      .|++|+|+|+...+.+.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r------~G~~v~VlE~~e~~R~~   40 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHR------KGIDVVVLESREDPRGE   40 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHH------cCCeEEEEeeccccccC
Confidence            3579999999999999999999      89999999998766543

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.44  E-value=2.2e-12  Score=100.24  Aligned_cols=149  Identities=18%  Similarity=0.157  Sum_probs=79.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC-CCcc--ccccccChhHH--hhhhhhH-----HhcC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV-GGHI--LSGAVIDPIAL--NELLPDW-----KDLG   89 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~-~g~~--~~~~~~~~~~~--~~~~~~~-----~~~~   89 (182)
                      .+..+|+|||||++|+++|+.|++      .|++|+|+||.+.. .+..  ..+-.+.+..+  .+.++.+     ...+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r------~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g  152 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKK------KGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAG  152 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHh------cCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhc
Confidence            345799999999999999999999      89999999998621 1100  01112233222  2222211     1111


Q ss_pred             CCCCccchhhhHHHHHh-hcc--CCCCCCCC-CCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcE
Q psy2240          90 APLNTPVHEDKFAYLTK-SKR--IGIPILPG-MPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV  165 (182)
Q Consensus        90 ~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~  165 (182)
                      ........    .+... ...  ..++.... .....+..+.++|..|.+.|.+.+..  ..++++++|++++.++++..
T Consensus       153 ~~~~~~i~----~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~--~~i~~g~~V~~I~~~~d~Vt  226 (668)
T PLN02927        153 CITGDRIN----GLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE--DVIRNESNVVDFEDSGDKVT  226 (668)
T ss_pred             Ccccceee----eeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC--CEEEcCCEEEEEEEeCCEEE
Confidence            10000000    00000 000  00110000 00001124578999999999776532  24778999999986544332


Q ss_pred             EE-----EEeCCEEEecCCC
Q psy2240         166 KG-----IATGDVGIAKDGS  180 (182)
Q Consensus       166 ~~-----v~~~~~vi~adG~  180 (182)
                      +.     ....++||+|||.
T Consensus       227 V~~~dG~ti~aDlVVGADG~  246 (668)
T PLN02927        227 VVLENGQRYEGDLLVGADGI  246 (668)
T ss_pred             EEECCCCEEEcCEEEECCCC
Confidence            21     2346999999996

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.43  E-value=6e-12  Score=97.53  Aligned_cols=141  Identities=21%  Similarity=0.211  Sum_probs=81.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPLNTP   95 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~   95 (182)
                      ++||+|||+|++|+++|+.+++.    ++|.+|+||||....++.+. +++.+.     .......+.+....+..+.+.
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~----g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~   78 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEA----NPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQ   78 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcH
Confidence            57999999999999999999871    13689999999987666543 322221     122233333333333333221


Q ss_pred             c--------hhhhHHHHHhhccCCCCCCCCCC--CCCCCcc------c---cchHHHHHHHHHHHHH-cCcEEecCCccc
Q psy2240          96 V--------HEDKFAYLTKSKRIGIPILPGMP--MNNHGNY------V---VRLGHVVKWLGEQAEA-MGVEIYPGIPAS  155 (182)
Q Consensus        96 ~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~---~~~~~l~~~l~~~~~~-~gv~i~~~~~v~  155 (182)
                      .        ..+.+.|+.. ....+....+..  ....++.      .   -....+...|.+.+.+ .++++++++.++
T Consensus        79 ~lv~~l~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~  157 (580)
T TIGR01176        79 DVVEYFVAEAPKEMVQLEH-WGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVT  157 (580)
T ss_pred             HHHHHHHHHhHHHHHHHHH-cCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEE
Confidence            1        2344555533 222222111100  0000110      1   1345788899888876 479999999999


Q ss_pred             eeEEcCCCcEEEE
Q psy2240         156 EVLYHGDGSVKGI  168 (182)
Q Consensus       156 ~i~~~~~g~~~~v  168 (182)
                      ++..+ ++.+.|+
T Consensus       158 ~Li~~-~g~v~Gv  169 (580)
T TIGR01176       158 DLLVD-DGRVCGL  169 (580)
T ss_pred             EEEee-CCEEEEE
Confidence            99874 5666654

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.43  E-value=3.1e-12  Score=96.29  Aligned_cols=152  Identities=24%  Similarity=0.240  Sum_probs=91.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccC-----------hh----HHhhhhhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID-----------PI----ALNELLPD   84 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~-----------~~----~~~~~~~~   84 (182)
                      +.++||+|||||++|+.+|+.++.      +|++|+|+|++....|.++....+-           .+    .+.+. ..
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~------RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er-~v   82 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAG------RGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAER-EV   82 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHh------CCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHH-HH
Confidence            367999999999999999999999      9999999999998887665332221           11    11111 01


Q ss_pred             HHhcCCCCCc------c-ch--------hhhHHHHHhhccC----------CCC-CCCCCCC---------CCCCccccc
Q psy2240          85 WKDLGAPLNT------P-VH--------EDKFAYLTKSKRI----------GIP-ILPGMPM---------NNHGNYVVR  129 (182)
Q Consensus        85 ~~~~~~~~~~------~-~~--------~~~~~~~~~~~~~----------~~~-~~~~~~~---------~~~~~~~~~  129 (182)
                      +......+..      + ..        ...+..++.....          ... .....|.         .....++++
T Consensus        83 L~~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vd  162 (532)
T COG0578          83 LLRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVD  162 (532)
T ss_pred             HHHhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceec
Confidence            1111111100      0 00        0111111111110          000 0000111         222345788


Q ss_pred             hHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe------------CCEEEecCCC
Q psy2240         130 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT------------GDVGIAKDGS  180 (182)
Q Consensus       130 ~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~------------~~~vi~adG~  180 (182)
                      ..+|.-.....+.++|.+++..++|+++..+. + +++|..            .+.||.|.|.
T Consensus       163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D~~tg~~~~ira~~VVNAaGp  223 (532)
T COG0578         163 DARLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVEDRETGETYEIRARAVVNAAGP  223 (532)
T ss_pred             hHHHHHHHHHHHHhcccchhhcceeeeeeecC-C-EEEEEEEecCCCcEEEEEcCEEEECCCc
Confidence            88999999999999999999999999998744 4 666553            4788988884

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.42  E-value=1.4e-11  Score=94.93  Aligned_cols=141  Identities=21%  Similarity=0.277  Sum_probs=80.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPLN   93 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~   93 (182)
                      +.++||+|||+|++|+++|+.+++      . .+|+||||.+..+|.+. +++.+.     .......+.+....+..+.
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~------~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~   78 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAE------H-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLC   78 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHH------C-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCC
Confidence            456899999999999999999988      5 79999999987666542 333221     1222233333332222222


Q ss_pred             ccc--------hhhhHHHHHhhccCCCCCCC------CCCCCCCCcc----cc-----chHHHHHHHHHHHHH-cCcEEe
Q psy2240          94 TPV--------HEDKFAYLTKSKRIGIPILP------GMPMNNHGNY----VV-----RLGHVVKWLGEQAEA-MGVEIY  149 (182)
Q Consensus        94 ~~~--------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~-----~~~~l~~~l~~~~~~-~gv~i~  149 (182)
                      +..        ....+.|+...+ ..+....      .+.....++.    .+     ....+...|.+.+++ .+++|+
T Consensus        79 d~~~v~~~~~~~~~~i~~L~~~G-v~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~  157 (536)
T PRK09077         79 DEDAVRFIAENAREAVQWLIDQG-VPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVL  157 (536)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcC-CccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence            211        123345554322 2222111      1111111110    11     234678888888866 489999


Q ss_pred             cCCccceeEEcC-----CCcEEEE
Q psy2240         150 PGIPASEVLYHG-----DGSVKGI  168 (182)
Q Consensus       150 ~~~~v~~i~~~~-----~g~~~~v  168 (182)
                      +++.++++..++     ++.++|+
T Consensus       158 ~~~~v~~Li~~~~~~~~~g~v~Gv  181 (536)
T PRK09077        158 ERHNAIDLITSDKLGLPGRRVVGA  181 (536)
T ss_pred             eeEEeeeeeecccccCCCCEEEEE
Confidence            999999987643     2566654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.42  E-value=2.9e-12  Score=98.03  Aligned_cols=113  Identities=22%  Similarity=0.288  Sum_probs=69.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHHH
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAY  103 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (182)
                      .|+|||||++||++|..|.+      .|++++++||.+..||.+.........    .-..|+.                
T Consensus         3 rVaVIGaG~sGL~a~k~l~e------~g~~~~~fE~~~~iGG~W~~~~~~~~g----~~~~y~s----------------   56 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLE------EGLEVTCFEKSDDIGGLWRYTENPEDG----RSSVYDS----------------   56 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHH------TT-EEEEEESSSSSSGGGCHSTTCCCS----EGGGSTT----------------
T ss_pred             EEEEECccHHHHHHHHHHHH------CCCCCeEEecCCCCCccCeeCCcCCCC----ccccccc----------------
Confidence            69999999999999999999      899999999999999865311100000    0000000                


Q ss_pred             HHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCc--EEecCCccceeEEcCC
Q psy2240         104 LTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGD  162 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv--~i~~~~~v~~i~~~~~  162 (182)
                      +..+.......++++|........+++.++.++|.+.+++.+.  .|+++++|+++++.++
T Consensus        57 l~~n~sk~~~~fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d  117 (531)
T PF00743_consen   57 LHTNTSKEMMAFSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPD  117 (531)
T ss_dssp             -B-SS-GGGSCCTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETT
T ss_pred             eEEeeCchHhcCCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccc
Confidence            0001111111223333322223356778999999999999885  5999999999987554

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR00275 flavoprotein, HI0933 family

Probab=99.41  E-value=1.7e-12  Score=96.61  Aligned_cols=127  Identities=21%  Similarity=0.302  Sum_probs=70.5

Q ss_pred             EEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc---cccccChh--HHhhhhhhHHhcCCCC----Cccc
Q psy2240          26 VIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL---SGAVIDPI--ALNELLPDWKDLGAPL----NTPV   96 (182)
Q Consensus        26 ~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~---~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~   96 (182)
                      +|||||++|+++|+.|++      +|.+|+||||.+..++...   .+.++...  ........+.......    ....
T Consensus         1 vIIGgG~aGl~aAi~aa~------~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~   74 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAR------EGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFS   74 (400)
T ss_pred             CEEEEeHHHHHHHHHHHh------cCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCC
Confidence            699999999999999999      8999999999988775432   11221110  0111111110000000    0001


Q ss_pred             hhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCC
Q psy2240          97 HEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD  162 (182)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~  162 (182)
                      ..+.+.|+...+ ..+........++   ..-....+.+.|.+.+++.|++++++++|+++..+++
T Consensus        75 ~~d~~~~~~~~G-v~~~~~~~g~~~p---~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~  136 (400)
T TIGR00275        75 NKDLIDFFESLG-LELKVEEDGRVFP---CSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDN  136 (400)
T ss_pred             HHHHHHHHHHcC-CeeEEecCCEeEC---CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC
Confidence            122334443221 2111111101110   1113467888999999999999999999999976443

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.41  E-value=3.8e-13  Score=107.26  Aligned_cols=135  Identities=24%  Similarity=0.302  Sum_probs=77.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHHH
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAY  103 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (182)
                      +|+||||||+|+++|+.|++.    ++|++|+|+||.+... ....+-.+.+..+ +.+..+..        .....+..
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~----~~G~~V~vlEr~~~~~-~~G~Gi~ls~~~l-~~L~~~~~--------~~~~~~~~   67 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLL----DPAHEVTVVERNRPYD-TFGWGVVFSDATL-GNLRAADP--------VSAAAIGD   67 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHh----CCCCeEEEEecCCCCc-ccCcceEccHHHH-HHHHhcCH--------HHHHHHHH
Confidence            699999999999999999981    1289999999987542 1112212222221 22221110        00000000


Q ss_pred             -HHhhccCCCCCCCCCC--CCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEeCCEEEecCCC
Q psy2240         104 -LTKSKRIGIPILPGMP--MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGS  180 (182)
Q Consensus       104 -~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~~~~vi~adG~  180 (182)
                       +.......+. .....  ........++|..|.+.|.+++.+.|++|+++++|+++....       ...|+||+|||.
T Consensus        68 ~~~~~~~~~~~-~~g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~~-------~~~D~VVgADG~  139 (765)
T PRK08255         68 AFNHWDDIDVH-FKGRRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQALA-------ADADLVIASDGL  139 (765)
T ss_pred             hcccCCceEEE-ECCEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhhh-------cCCCEEEEcCCC
Confidence             0000000000 00000  011112358899999999999999999999999998874211       356999999995

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.41  E-value=2.3e-11  Score=94.54  Aligned_cols=139  Identities=21%  Similarity=0.242  Sum_probs=75.8

Q ss_pred             cEEEECCChHHHHHHHHHH----HhhhhcCCCceEEEEecCCCCCCccccccc--cCh--------hHHhhhhhhHHhcC
Q psy2240          24 DVVIVGGGPAGMAAAIRLK----QLAEKDGKELKVCLVEKAAEVGGHILSGAV--IDP--------IALNELLPDWKDLG   89 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~----~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~--~~~--------~~~~~~~~~~~~~~   89 (182)
                      ||||||+|++||++|+.++    +      .|.+|+||||....+..+.+.+.  +..        ......+.+.....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e------~G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~   74 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDK------KGLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDL   74 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhh------CCCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhc
Confidence            8999999999999999998    5      68999999998754332222231  111        11122222222222


Q ss_pred             CCCCccc--------hhhhHHHHHhhccCCCCCCC-CCCCCCCCcc--ccchHHHHHHHHHHHHHcCcEEecCCccceeE
Q psy2240          90 APLNTPV--------HEDKFAYLTKSKRIGIPILP-GMPMNNHGNY--VVRLGHVVKWLGEQAEAMGVEIYPGIPASEVL  158 (182)
Q Consensus        90 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~  158 (182)
                      ..+.+..        ..+.+.|+.. ....+.... +......+..  .+..+.+.+.+...+++.++++++++.++++.
T Consensus        75 ~gl~d~~lV~~lv~~s~~~i~~L~~-~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll  153 (614)
T TIGR02061        75 MGLVREDLIFDMARHVDDSVHLFEE-WGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLL  153 (614)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHH-cCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEE
Confidence            2222211        1244555543 222222111 1111111000  11244566666666766678999999999998


Q ss_pred             EcCC--CcEEEEE
Q psy2240         159 YHGD--GSVKGIA  169 (182)
Q Consensus       159 ~~~~--g~~~~v~  169 (182)
                      .+++  |+++|+.
T Consensus       154 ~d~~~~GrV~Gv~  166 (614)
T TIGR02061       154 LDKNTPNRIAGAV  166 (614)
T ss_pred             ecCCCCCeEEEEE
Confidence            7543  6777643

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.39  E-value=1.5e-11  Score=94.26  Aligned_cols=150  Identities=22%  Similarity=0.227  Sum_probs=83.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC-CCCccc-cccccC-----hhHHhhhhhhHHhcCCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE-VGGHIL-SGAVID-----PIALNELLPDWKDLGAPLN   93 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~-~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~   93 (182)
                      .++||+|||+|.+|+++|+.++        +.+|+||||.+. .++.+. +.+.+.     .......+.++...+..+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa--------~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~   79 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA--------PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLC   79 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC--------cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCC
Confidence            4689999999999999999995        359999999986 344332 222221     1222333333333332222


Q ss_pred             ccc--------hhhhHHHHHhhccCCCCCCCC--CCCCCCCc------cc----cchHHHHHHHHHHHHHc-CcEEecCC
Q psy2240          94 TPV--------HEDKFAYLTKSKRIGIPILPG--MPMNNHGN------YV----VRLGHVVKWLGEQAEAM-GVEIYPGI  152 (182)
Q Consensus        94 ~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~----~~~~~l~~~l~~~~~~~-gv~i~~~~  152 (182)
                      +..        ..+.+.|+...+ ..+....+  +.....+.      ..    -....+.+.|.+.+++. |+++++++
T Consensus        80 d~~~v~~~~~~s~~~i~wL~~~G-v~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~  158 (513)
T PRK07512         80 DPAVAALITAEAPAAIEDLLRLG-VPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGA  158 (513)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhC-CccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECc
Confidence            211        123445554322 22221111  10000000      01    12356888898888764 89999999


Q ss_pred             ccceeEEcCCCcEEEEE-----------eCCEEEecCCC
Q psy2240         153 PASEVLYHGDGSVKGIA-----------TGDVGIAKDGS  180 (182)
Q Consensus       153 ~v~~i~~~~~g~~~~v~-----------~~~~vi~adG~  180 (182)
                      .|+++..+ ++.++++.           ++.+|++++|.
T Consensus       159 ~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~  196 (513)
T PRK07512        159 EARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGI  196 (513)
T ss_pred             Chhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence            99998763 45555432           34566666664

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.39  E-value=3.2e-11  Score=89.58  Aligned_cols=42  Identities=36%  Similarity=0.544  Sum_probs=36.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ++++||+|||||++|+++|++|++      .|.+|+++|+.....+.+
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~------~G~~V~vie~~~~~~g~s   43 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAE------RGADVTVLEAGEAGGGAA   43 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHH------cCCEEEEEecCccCCcch
Confidence            456899999999999999999999      899999999998655433

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.37  E-value=1.7e-11  Score=92.62  Aligned_cols=53  Identities=23%  Similarity=0.316  Sum_probs=45.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL   81 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~   81 (182)
                      +|||+||||||+|+++|+.+++      .|.+|+|+|+. ..||.....++++.+.+...
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~------~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~   54 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAAN------HGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYG   54 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHh------CCCcEEEEecC-ccCceeecCCcCchHHHHHH
Confidence            5899999999999999999999      89999999995 67887777778777765443

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.37  E-value=3.5e-11  Score=91.38  Aligned_cols=53  Identities=32%  Similarity=0.470  Sum_probs=44.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL   78 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~   78 (182)
                      +..+||+|||||++|+++|+.|++      .|.+|+|||+.+..||.....+++++..+
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~------~G~~v~liE~~~~~GG~~~~~gcipsk~l   55 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAK------LGKRVAVIERYRNVGGGCTHTGTIPSKAL   55 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHh------CCCEEEEEeccccccccccccCCCCHHHH
Confidence            346899999999999999999999      89999999998778887666666665544

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.37  E-value=9.2e-11  Score=89.39  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=37.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ..+++|||||++||++|+.|.+-  .+.+|.+|+|+|+.+.+||...
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~d--g~~~G~~VtIlEk~~~~GG~~~   66 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRD--GQMPGENITILEELDVPGGSLD   66 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc--cCCCCCcEEEEeCCCCCCCCcc
Confidence            46899999999999999999981  1224789999999999888653

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.37  E-value=2.2e-11  Score=94.85  Aligned_cols=138  Identities=18%  Similarity=0.125  Sum_probs=74.4

Q ss_pred             EEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC-Ccc-cccccc--------ChhHHhhhhhhHHhcCCCCCc
Q psy2240          25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG-GHI-LSGAVI--------DPIALNELLPDWKDLGAPLNT   94 (182)
Q Consensus        25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~-g~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~   94 (182)
                      |+|||+|++|+++|+.+++      .|.+|+||||.+..+ +.+ .+.+.+        ........+.++...+..+.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae------~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d   74 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAE------LGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRAR   74 (603)
T ss_pred             CEEECccHHHHHHHHHHHH------cCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCC
Confidence            6999999999999999999      899999999998433 322 222211        011222233333333322222


Q ss_pred             c--------chhhhHHHHHhhccCCCCCCCCC--CCCCCCcc---------ccchHHHHHHHHHHHHH----cCcEEecC
Q psy2240          95 P--------VHEDKFAYLTKSKRIGIPILPGM--PMNNHGNY---------VVRLGHVVKWLGEQAEA----MGVEIYPG  151 (182)
Q Consensus        95 ~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~l~~~l~~~~~~----~gv~i~~~  151 (182)
                      .        ...+.+.|+...+ ..+....+.  ..+..++.         .-....+...|.+.+++    .|++++++
T Consensus        75 ~~lv~~l~~~s~~~i~~L~~~G-v~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~  153 (603)
T TIGR01811        75 ESPVKRLAVASPEIIDLMDAMG-VPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEG  153 (603)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC-CEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeC
Confidence            1        1223455554322 222111100  00000000         01234566666655543    37999999


Q ss_pred             CccceeEEcCCCcEEEEE
Q psy2240         152 IPASEVLYHGDGSVKGIA  169 (182)
Q Consensus       152 ~~v~~i~~~~~g~~~~v~  169 (182)
                      ++++++..++++.++|+.
T Consensus       154 t~v~~Li~dd~grV~GV~  171 (603)
T TIGR01811       154 WEMLDIIVVDGNRARGII  171 (603)
T ss_pred             cEEEEEEEcCCCEEEEEE
Confidence            999999876556666643

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.36  E-value=3e-11  Score=91.84  Aligned_cols=56  Identities=36%  Similarity=0.494  Sum_probs=47.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL   81 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~   81 (182)
                      +..+||+|||||++|+.+|..|++      .|.+|+|||+.+..||...+.++++.+.+...
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~------~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~   57 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAAD------LGLETVCVERYSTLGGVCLNVGCIPSKALLHV   57 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCcccccccCCCcccHHHHHHH
Confidence            446899999999999999999999      89999999998778887777777777665443

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.36  E-value=3.3e-11  Score=91.54  Aligned_cols=52  Identities=44%  Similarity=0.613  Sum_probs=43.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN   79 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~   79 (182)
                      .+||++|||||++|+++|+.|++      .|.+|+|+|+.+ .||.....++++.+.+.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~------~G~~V~liE~~~-~GG~c~~~gciP~k~l~   54 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQ------LGLKVAIVEKEK-LGGTCLNRGCIPSKALL   54 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHH------CCCcEEEEeccc-cccceeecccCCcHHHH
Confidence            46899999999999999999999      899999999986 78776666666655443

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=99.35  E-value=4.5e-11  Score=87.98  Aligned_cols=57  Identities=19%  Similarity=0.223  Sum_probs=45.0

Q ss_pred             ccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCC-cEEE-----------EEeCCEEEecCCCC
Q psy2240         125 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDG-SVKG-----------IATGDVGIAKDGSP  181 (182)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g-~~~~-----------v~~~~~vi~adG~~  181 (182)
                      +..++-..|.+.|.+.+++. |++++++++|++|++.+++ +.+.           +.++-++|+|+|.+
T Consensus       175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a  244 (488)
T PF06039_consen  175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA  244 (488)
T ss_pred             CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHh
Confidence            45678889999999999886 8999999999999998888 4332           33345678999864

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK06116 glutathione reductase; Validated

Probab=99.35  E-value=2.5e-11  Score=91.85  Aligned_cols=51  Identities=27%  Similarity=0.487  Sum_probs=43.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL   78 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~   78 (182)
                      ..+||+||||||+|+++|+.|++      .|.+|+|+|+. ..||...+-++++++.+
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~------~G~~V~liE~~-~~GG~c~n~gciP~k~l   53 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAM------YGAKVALIEAK-RLGGTCVNVGCVPKKLM   53 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH------CCCeEEEEecc-chhhhhhccCcchHHHH
Confidence            46899999999999999999999      89999999986 57776666666666554

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.34  E-value=4.3e-11  Score=90.88  Aligned_cols=56  Identities=43%  Similarity=0.550  Sum_probs=47.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELL   82 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~   82 (182)
                      +.|||+||||||+|+++|+.+++      .|.+|+|||+....||.....++++++.+....
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~------~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~   57 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQ------LGLKVACVEGRSTLGGTCLNVGCMPSKALLHAS   57 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHh------CCCeEEEEecCCceeeeeccCcccccHHHHHHh
Confidence            35899999999999999999999      899999999876788877777888777654443

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.34  E-value=4.6e-11  Score=89.97  Aligned_cols=135  Identities=22%  Similarity=0.314  Sum_probs=74.2

Q ss_pred             EECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC--CCCccccccc--c-C---hh------HHhhhhhhHHhcCCCC
Q psy2240          27 IVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE--VGGHILSGAV--I-D---PI------ALNELLPDWKDLGAPL   92 (182)
Q Consensus        27 IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~--~~g~~~~~~~--~-~---~~------~~~~~~~~~~~~~~~~   92 (182)
                      |||+|++|+++|+.+++      .|.+|+||||.+.  .++.+..+..  . .   ..      .....+.++.......
T Consensus         1 VVG~G~AGl~AA~~Aa~------~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARR------AGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGR   74 (432)
T ss_pred             CCcccHHHHHHHHHHHh------CCCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCC
Confidence            79999999999999999      8999999999874  3443332211  0 0   00      0111222222211111


Q ss_pred             Cccc--------hhhhHHHHHhhccCCCCCCC--CCCCCCCCccc-cchHHHHHHHHHHHHHcCcEEecCCccceeEEcC
Q psy2240          93 NTPV--------HEDKFAYLTKSKRIGIPILP--GMPMNNHGNYV-VRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG  161 (182)
Q Consensus        93 ~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~  161 (182)
                      .+..        ..+.+.|+.... ..+....  ..+......+. -....+.+.|.+.+++.|++|+++++|++|..++
T Consensus        75 ~d~~l~~~~~~~s~~~i~wl~~~G-v~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~  153 (432)
T TIGR02485        75 TNESLSRLGIGRGSRDLRWAFAHG-VHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEA  153 (432)
T ss_pred             CCHHHHHHHHhcchhHHHHHHhCC-ceeeecCCCCccccCceeeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecC
Confidence            1110        123345554322 2221110  11110000000 1235688899999999999999999999998753


Q ss_pred             -CCcEEEE
Q psy2240         162 -DGSVKGI  168 (182)
Q Consensus       162 -~g~~~~v  168 (182)
                       +++++++
T Consensus       154 ~~g~v~gv  161 (432)
T TIGR02485       154 FDGAHDGP  161 (432)
T ss_pred             CCCeEEEE
Confidence             4666553

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.33  E-value=7e-11  Score=89.95  Aligned_cols=55  Identities=45%  Similarity=0.622  Sum_probs=46.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL   81 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~   81 (182)
                      ...||++|||||++|+++|+.|++      .|++|+|+|+. ..||.....++++++.+...
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~------~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~   56 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQ------LGLKTALVEKG-KLGGTCLHKGCIPSKALLHS   56 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHh------CCCeEEEEEcc-CCCcceEcCCcCchHHHHHH
Confidence            457999999999999999999999      89999999996 67887777777776665433

>PRK06370 mercuric reductase; Validated

Probab=99.32  E-value=2.7e-11  Score=92.03  Aligned_cols=56  Identities=25%  Similarity=0.381  Sum_probs=45.9

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL   81 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~   81 (182)
                      |+.++||+||||||+|+++|+.|++      .|++|+|+|+. ..||.....++++++.+...
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~------~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~   57 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAG------LGMKVALIERG-LLGGTCVNTGCVPTKTLIAS   57 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHh------CCCeEEEEecC-ccCCceeccccCcHHHHHHH
Confidence            4567999999999999999999999      89999999997 46766666677776655433

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.32  E-value=2.3e-11  Score=91.95  Aligned_cols=52  Identities=27%  Similarity=0.452  Sum_probs=43.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN   79 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~   79 (182)
                      ++|||+||||||+|+++|+.|++      .|.+|+|+||. ..||.....++++++.+.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~------~G~~V~liE~~-~~GG~c~~~gciPsk~l~   52 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAE------HGAKALLVEAK-KLGGTCVNVGCVPKKVMW   52 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH------CCCcEEEeccc-ccccceeccCcCccHHHH
Confidence            35899999999999999999999      89999999996 578777677777665543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.32  E-value=1.3e-10  Score=96.50  Aligned_cols=43  Identities=42%  Similarity=0.562  Sum_probs=38.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ..++||||||+|.+|+++|+.+++      .|.+|+||||.+..+|.+.
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae------~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAAS------CGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEEccCCCCCchh
Confidence            346899999999999999999999      8999999999998887653

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.32  E-value=1.7e-11  Score=90.34  Aligned_cols=131  Identities=21%  Similarity=0.227  Sum_probs=72.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc-ccccccChhHHhhhhhh-HHhcCCCCCccchhhhH
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI-LSGAVIDPIALNELLPD-WKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  101 (182)
                      ||+|||||++|+++|+.|++.    .+|++|++||+.+..++.. ++-......   ..... +...       +..   
T Consensus         1 DviIvGaG~AGl~lA~~L~~~----~~g~~V~lle~~~~~~~~~tw~~~~~~~~---~~~~~~~~~~-------v~~---   63 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRA----RPDFRIRVIEAGRTIGGNHTWSFFDSDLS---DAQHAWLADL-------VQT---   63 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCCCCCCCcccceecccccc---hhhhhhhhhh-------heE---
Confidence            899999999999999999981    1399999999988665421 110000000   00000 0000       000   


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE---EEeCCEEEecC
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG---IATGDVGIAKD  178 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~---v~~~~~vi~ad  178 (182)
                      .|  ....+..+...  .........+++..|.+.+.+.+.. +  ++.+++|+++.  +++..+.   ...+++||+|+
T Consensus        64 ~W--~~~~v~~~~~~--~~l~~~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~--~~~v~l~dg~~~~A~~VI~A~  134 (370)
T TIGR01789        64 DW--PGYEVRFPKYR--RKLKTAYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGLD--ADGVDLAPGTRINARSVIDCR  134 (370)
T ss_pred             eC--CCCEEECcchh--hhcCCCceEEEHHHHHHHHHHhhcc-c--EEecCEEEEEe--CCEEEECCCCEEEeeEEEECC
Confidence            00  00000000000  0011225688899999998877643 3  67788998883  3332221   35678999999


Q ss_pred             CC
Q psy2240         179 GS  180 (182)
Q Consensus       179 G~  180 (182)
                      |.
T Consensus       135 G~  136 (370)
T TIGR01789       135 GF  136 (370)
T ss_pred             CC
Confidence            94

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.31  E-value=6.5e-11  Score=84.93  Aligned_cols=86  Identities=28%  Similarity=0.364  Sum_probs=59.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      +||+|||||++|+++|..|++      .|.+|+|||+.+ .+|.....            .                   
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~------~g~~v~lie~~~-~gg~~~~~------------~-------------------   42 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAAR------ANLKTLIIEGME-PGGQLTTT------------T-------------------   42 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHH------CCCCEEEEeccC-CCcceeec------------c-------------------
Confidence            589999999999999999999      899999999886 44321100            0                   


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG  161 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~  161 (182)
                      ++     ..++.+         ...+....+...+.+.+++.++++++ ++|+++..++
T Consensus        43 ~~-----~~~~~~---------~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~   86 (300)
T TIGR01292        43 EV-----ENYPGF---------PEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSD   86 (300)
T ss_pred             cc-----cccCCC---------CCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecC
Confidence            00     000000         11223346778888888889999998 8999987644

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PTZ00058 glutathione reductase; Provisional

Probab=99.31  E-value=1.5e-10  Score=89.32  Aligned_cols=55  Identities=35%  Similarity=0.524  Sum_probs=46.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL   81 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~   81 (182)
                      ..+||++|||||++|.++|+.+++      .|.+|+|||+. ..||...+-++++++.+...
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~------~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~  100 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAAR------NKAKVALVEKD-YLGGTCVNVGCVPKKIMFNA  100 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHH------cCCeEEEEecc-cccccccccCCCCCchhhhh
Confidence            457899999999999999999999      89999999997 57887777788877665443

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.30  E-value=3.4e-11  Score=90.55  Aligned_cols=125  Identities=24%  Similarity=0.353  Sum_probs=74.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHE   98 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (182)
                      ...+||+|||||++|+++|++|.+      .|.+ ++||||+...||.++-                  .-.+......+
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~------~g~~~~~i~Ek~~~~Gg~W~~------------------~ry~~l~~~~p   61 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQ------AGVPDFVIFEKRDDVGGTWRY------------------NRYPGLRLDSP   61 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHH------cCCCcEEEEEccCCcCCcchh------------------ccCCceEECCc
Confidence            456799999999999999999999      8988 9999999988875431                  10010111000


Q ss_pred             hhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC--cEEecCCccceeEEcCCCcEEEE--------
Q psy2240          99 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG--VEIYPGIPASEVLYHGDGSVKGI--------  168 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g--v~i~~~~~v~~i~~~~~g~~~~v--------  168 (182)
                      .   +.     ..++..   +.. ..........+..++.+.+++++  ..|.+++.|+.+..++++....|        
T Consensus        62 ~---~~-----~~~~~~---p~~-~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~  129 (443)
T COG2072          62 K---WL-----LGFPFL---PFR-WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTG  129 (443)
T ss_pred             h---he-----eccCCC---ccC-CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCee
Confidence            0   00     011111   111 00111222236777777777766  45777788877777666533322        


Q ss_pred             -EeCCEEEecCCC
Q psy2240         169 -ATGDVGIAKDGS  180 (182)
Q Consensus       169 -~~~~~vi~adG~  180 (182)
                       ...+.||.|.|.
T Consensus       130 ~~~a~~vV~ATG~  142 (443)
T COG2072         130 ELTADFVVVATGH  142 (443)
T ss_pred             eEecCEEEEeecC
Confidence             235667777665

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.29  E-value=1.1e-10  Score=87.44  Aligned_cols=58  Identities=45%  Similarity=0.566  Sum_probs=51.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP   83 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~   83 (182)
                      +.+||++|||+|++|..+|..+++      .|.+|+++|+....||...+-+|++++.+.....
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~------~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~   59 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQ------LGLKVALVEKGERLGGTCLNVGCIPSKALLHAAE   59 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHh------CCCCEEEEeecCCcCceEEeeCccccHHHHHHHH
Confidence            467999999999999999999999      8999999999987888888889998887765543

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.29  E-value=1.5e-10  Score=88.99  Aligned_cols=154  Identities=25%  Similarity=0.254  Sum_probs=87.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccChh----------HHhhhhhhHHhc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDPI----------ALNELLPDWKDL   88 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~~----------~~~~~~~~~~~~   88 (182)
                      ..++||+|||||.+||.+|+.+++      .|++|+|+||.+..++.+. +.+.+...          ....++.+....
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~------~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg   77 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAE------AGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKG   77 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHh------cCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhc
Confidence            467899999999999999999999      8999999999998776553 22221110          111111111112


Q ss_pred             CCCCCccc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCC---------ccccchHHHHHHHHHHHHH-cCcEE
Q psy2240          89 GAPLNTPV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHG---------NYVVRLGHVVKWLGEQAEA-MGVEI  148 (182)
Q Consensus        89 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------~~~~~~~~l~~~l~~~~~~-~gv~i  148 (182)
                      ...+.+..        .+..+.++..... .+....+.  .....+         ...-..+.+...|.+.+.+ .++++
T Consensus        78 ~d~l~dqd~i~~~~~~ap~~v~~Le~~G~-~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~  156 (562)
T COG1053          78 GDGLGDQDAVEAFADEAPEAVDELEKWGV-PFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEI  156 (562)
T ss_pred             cCCcCCHHHHHHHHHhhHHHHHHHHHhCC-CcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchh
Confidence            22222211        1122333332221 11111110  000000         1122345788899999887 66789


Q ss_pred             ecCCccceeEEcCCCcEEEEE-------------eCCEEEecCCC
Q psy2240         149 YPGIPASEVLYHGDGSVKGIA-------------TGDVGIAKDGS  180 (182)
Q Consensus       149 ~~~~~v~~i~~~~~g~~~~v~-------------~~~~vi~adG~  180 (182)
                      +.++.++++..++++.+.|+.             ...+|++++|.
T Consensus       157 ~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~  201 (562)
T COG1053         157 FDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGA  201 (562)
T ss_pred             hhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCc
Confidence            999999999876665455532             23667777775

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.28  E-value=3.7e-11  Score=92.17  Aligned_cols=139  Identities=18%  Similarity=0.248  Sum_probs=78.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccc---ccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGA---VIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      +||+|||||++|+.+|..+++      .|.+|+|||+.....+...+..   ......+.+.++.   .+         .
T Consensus         1 yDViVIGaG~AGl~aA~ala~------~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEida---LG---------G   62 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAAR------MGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDA---LG---------G   62 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHH------CCCCEEEEecccccccCCCccccccccccchhhhhhhc---cc---------c
Confidence            699999999999999999999      8999999999754332221111   1111111111111   00         0


Q ss_pred             hHHHHHhhccCCCCCCC--CCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEEEEe------
Q psy2240         100 KFAYLTKSKRIGIPILP--GMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGIAT------  170 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~v~~------  170 (182)
                      .+..........+..+.  ..+........+++..+.+.|.+.+++. ++.++.+ .|+++..++++.+.+|.+      
T Consensus        63 ~~~~~~d~~~i~~r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I  141 (617)
T TIGR00136        63 LMGKAADKAGLQFRVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKF  141 (617)
T ss_pred             hHHHHHHhhceeheecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEE
Confidence            01111111111111110  0111111135789999999999999886 6788754 777876544556665543      


Q ss_pred             -CCEEEecCCC
Q psy2240         171 -GDVGIAKDGS  180 (182)
Q Consensus       171 -~~~vi~adG~  180 (182)
                       ++.||.|.|.
T Consensus       142 ~Ad~VILATGt  152 (617)
T TIGR00136       142 RAKAVIITTGT  152 (617)
T ss_pred             ECCEEEEccCc
Confidence             3667777664

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.28  E-value=1.7e-10  Score=93.73  Aligned_cols=37  Identities=38%  Similarity=0.530  Sum_probs=34.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++||+|||||.+|+++|+.+++      .|.+|+||||.+.
T Consensus        11 ~~~~DVlVVG~G~AGl~AAl~Aa~------~G~~V~lleK~~~   47 (897)
T PRK13800         11 RLDCDVLVIGGGTAGTMAALTAAE------HGANVLLLEKAHV   47 (897)
T ss_pred             eeecCEEEECcCHHHHHHHHHHHH------CCCeEEEEecccc
Confidence            457899999999999999999999      8999999999975

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.26  E-value=1.7e-10  Score=87.09  Aligned_cols=51  Identities=29%  Similarity=0.400  Sum_probs=40.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC-CCCccccccccChhH
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE-VGGHILSGAVIDPIA   77 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~-~~g~~~~~~~~~~~~   77 (182)
                      +.+||+|||||++|+++|..|++      .|.+|+|+||.+. .||...+.++++...
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~------~g~~V~liE~~~~~~GG~c~~~gciP~k~   53 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLAS------AGKKVALVEESKAMYGGTCINIGCIPTKT   53 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHh------CCCEEEEEecCCcccceeeecCccccchH
Confidence            36899999999999999999999      8999999999864 466544455554443

>KOG2844|consensus

Probab=99.25  E-value=1.5e-10  Score=88.27  Aligned_cols=59  Identities=19%  Similarity=0.308  Sum_probs=46.3

Q ss_pred             CCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe------CCEEEecCC
Q psy2240         120 MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT------GDVGIAKDG  179 (182)
Q Consensus       120 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~------~~~vi~adG  179 (182)
                      .+.++...+++..+.++|...+++.|+.|++++.|++|....+ ...+|.+      +..+|.|.|
T Consensus       176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-~~~gVeT~~G~iet~~~VNaaG  240 (856)
T KOG2844|consen  176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD-KFGGVETPHGSIETECVVNAAG  240 (856)
T ss_pred             eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-CccceeccCcceecceEEechh
Confidence            4566677899999999999999999999999999999976333 3335544      466777766

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.25  E-value=2.1e-11  Score=67.72  Aligned_cols=36  Identities=36%  Similarity=0.593  Sum_probs=32.5

Q ss_pred             EECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          27 IVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        27 IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      |||||++|+++|+.|++      .|.+|+|+|+.+.++|...
T Consensus         1 IiGaG~sGl~aA~~L~~------~g~~v~v~E~~~~~GG~~~   36 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAK------AGYRVTVFEKNDRLGGRAR   36 (68)
T ss_dssp             EES-SHHHHHHHHHHHH------TTSEEEEEESSSSSSGGGC
T ss_pred             CEeeCHHHHHHHHHHHH------CCCcEEEEecCcccCccee
Confidence            89999999999999999      8999999999999987654

...

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.24  E-value=1.6e-10  Score=88.08  Aligned_cols=51  Identities=39%  Similarity=0.553  Sum_probs=39.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC------CCCCCccccccccChh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA------AEVGGHILSGAVIDPI   76 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~------~~~~g~~~~~~~~~~~   76 (182)
                      ...+|++|||||++|+++|+.+++      .|.+|+|||+.      ...||...+.++++..
T Consensus         2 ~~~~DviIIG~G~aG~~aA~~~~~------~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k   58 (475)
T PRK06327          2 SKQFDVVVIGAGPGGYVAAIRAAQ------LGLKVACIEAWKNPKGKPALGGTCLNVGCIPSK   58 (475)
T ss_pred             CcceeEEEECCCHHHHHHHHHHHh------CCCeEEEEecccCCCCCCCcCCccccccccHHH
Confidence            346899999999999999999999      89999999982      3455555444554433

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.24  E-value=2e-10  Score=88.98  Aligned_cols=38  Identities=39%  Similarity=0.851  Sum_probs=33.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG   65 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g   65 (182)
                      ..+||+|||||++|+++|+.|++      +|++|+|||+. ..+|
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar------~g~~V~liE~~-~~GG   40 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGR------AKLDTLIIEKD-DFGG   40 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHH------CCCCEEEEecC-CCCc
Confidence            35899999999999999999999      89999999986 3444

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.23  E-value=2.9e-10  Score=87.49  Aligned_cols=106  Identities=27%  Similarity=0.329  Sum_probs=70.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      ..+||+|||||++|+++|..|++      .|++|+|+|+.  .||....                 ..            
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~------~G~~v~li~~~--~GG~~~~-----------------~~------------  252 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAAR------KGIRTGIVAER--FGGQVLD-----------------TM------------  252 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecC--CCCeeec-----------------cC------------
Confidence            46899999999999999999999      89999999763  4542210                 00            


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEE
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGI  175 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi  175 (182)
                                .++.+..       .......++.+.|.+.+++.|++++.+++|+++..+++.+.+.     ....+.+|
T Consensus       253 ----------~~~~~~~-------~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vV  315 (517)
T PRK15317        253 ----------GIENFIS-------VPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVI  315 (517)
T ss_pred             ----------cccccCC-------CCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEE
Confidence                      0000000       0012345788899999999999999999999997744332221     22345566


Q ss_pred             ecCCC
Q psy2240         176 AKDGS  180 (182)
Q Consensus       176 ~adG~  180 (182)
                      .|.|+
T Consensus       316 iAtG~  320 (517)
T PRK15317        316 LATGA  320 (517)
T ss_pred             ECCCC
Confidence            66664

>PLN02507 glutathione reductase

Probab=99.23  E-value=5.9e-10  Score=85.32  Aligned_cols=54  Identities=24%  Similarity=0.246  Sum_probs=43.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEec---------CCCCCCccccccccChhHHhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK---------AAEVGGHILSGAVIDPIALNE   80 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~---------~~~~~g~~~~~~~~~~~~~~~   80 (182)
                      ..||++|||||++|+.+|..+++      .|++|+|+|+         ....||....-++++++.+..
T Consensus        24 ~~yDvvVIG~GpaG~~aA~~a~~------~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~   86 (499)
T PLN02507         24 YDFDLFVIGAGSGGVRAARFSAN------FGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVY   86 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHH
Confidence            46899999999999999999999      8999999996         234666665666766666533

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.22  E-value=7.2e-10  Score=84.34  Aligned_cols=51  Identities=45%  Similarity=0.565  Sum_probs=41.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL   78 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~   78 (182)
                      .++||+|||||++|+++|+.|++      .|.+|+|||+. ..||.....++++.+.+
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~------~G~~V~lie~~-~~GG~c~~~gciPsk~l   53 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQ------LGLKTAVVEKK-YWGGVCLNVGCIPSKAL   53 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh------CCCeEEEEecC-CCCCceecCCccccHHH
Confidence            45899999999999999999999      89999999986 46766666666654443

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.21  E-value=1.1e-10  Score=80.09  Aligned_cols=38  Identities=42%  Similarity=0.674  Sum_probs=35.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      +|+|||+|++|+++|+.|+.      .|.+|+|+||+.-.+|+.
T Consensus         3 siaIVGaGiAGl~aA~~L~~------aG~~vtV~eKg~GvGGRl   40 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALRE------AGREVTVFEKGRGVGGRL   40 (331)
T ss_pred             cEEEEccchHHHHHHHHHHh------cCcEEEEEEcCCCcccch
Confidence            69999999999999999999      999999999998777754

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=99.21  E-value=3.6e-10  Score=83.50  Aligned_cols=114  Identities=17%  Similarity=0.139  Sum_probs=65.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc---------ChhHHhhhhhhHHhcCCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI---------DPIALNELLPDWKDLGAPLN   93 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~   93 (182)
                      .||+|||||++|+.+|+.|++      .|++|+|+|+.+...........+         ....+....+.|.       
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr------~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~-------   69 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAK------RGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLK-------   69 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHh------CCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchH-------
Confidence            489999999999999999999      899999999887553211100000         0111111122222       


Q ss_pred             ccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeE
Q psy2240          94 TPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVL  158 (182)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~  158 (182)
                           ..+..+.   ...+...........+...+++..+.+.|.+.+++ .+++++ ..+|+++.
T Consensus        70 -----~em~~lg---sl~~~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~  126 (436)
T PRK05335         70 -----EEMRRLG---SLIMEAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP  126 (436)
T ss_pred             -----HHHHHhc---chheecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence                 1111110   00000000000111113467888899999999876 479988 56999985

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=4e-10  Score=80.53  Aligned_cols=107  Identities=29%  Similarity=0.361  Sum_probs=66.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      +.+||+||||||+|+++|+.+++      ++++ ++|+|+.. ++|...               .+              
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r------~~l~~~li~~~~~-~gg~~~---------------~~--------------   45 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAAR------AGLKVVLILEGGE-PGGQLT---------------KT--------------   45 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHH------cCCCcEEEEecCC-cCCccc---------------cc--------------
Confidence            46899999999999999999999      8998 66666653 332110               00              


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE-E---EEeCCEEE
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK-G---IATGDVGI  175 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~-~---v~~~~~vi  175 (182)
                            .    ....+   |-+   ...+....|.+.+.+.+...++++.. ..|.+++..++...+ +   ...++.||
T Consensus        46 ------~----~veny---pg~---~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~~~ak~vI  108 (305)
T COG0492          46 ------T----DVENY---PGF---PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGTYEAKAVI  108 (305)
T ss_pred             ------e----eecCC---CCC---ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCeEEEeEEE
Confidence                  0    00001   111   22244568888999999899999888 677777653321111 1   23345555


Q ss_pred             ecCCC
Q psy2240         176 AKDGS  180 (182)
Q Consensus       176 ~adG~  180 (182)
                      -|.|+
T Consensus       109 iAtG~  113 (305)
T COG0492         109 IATGA  113 (305)
T ss_pred             ECcCC
Confidence            55554

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.20  E-value=1.1e-09  Score=83.35  Aligned_cols=49  Identities=51%  Similarity=0.706  Sum_probs=41.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA   77 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~   77 (182)
                      +|||+|||||++|+++|+.|++      .|.+|+|||+ +..||...+.++++...
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~------~G~~v~lie~-~~~GG~~~~~gc~Psk~   49 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQ------LGLKVALVEK-EYLGGTCLNVGCIPTKA   49 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHh------CCCeEEEEec-CCCCCceeecCccchHH
Confidence            3799999999999999999999      8999999999 67788766556655443

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK14694 putative mercuric reductase; Provisional

Probab=99.19  E-value=2.9e-10  Score=86.52  Aligned_cols=55  Identities=20%  Similarity=0.457  Sum_probs=45.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL   81 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~   81 (182)
                      ...+||+|||||++|+++|+.|++      .|++|+|||+. ..||...+.++++++.+.+.
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~------~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~   58 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATE------RGARVTLIERG-TIGGTCVNIGCVPSKIMIRA   58 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh------CCCcEEEEEcc-ccccceecCCccccHHHHHH
Confidence            356899999999999999999999      89999999997 57777666677766655433

>PLN02546 glutathione reductase

Probab=99.18  E-value=6.6e-10  Score=85.77  Aligned_cols=55  Identities=18%  Similarity=0.186  Sum_probs=44.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC---------CCCCCccccccccChhHHhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA---------AEVGGHILSGAVIDPIALNEL   81 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~---------~~~~g~~~~~~~~~~~~~~~~   81 (182)
                      .+|||+|||+|++|..+|..+++      .|.+|+|+|+.         ...||...+-+|++.+.+...
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~------~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~a  141 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASN------FGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYA  141 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHH
Confidence            45899999999999999999999      89999999962         235666667778877766443

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.16  E-value=5.8e-10  Score=85.38  Aligned_cols=50  Identities=30%  Similarity=0.476  Sum_probs=39.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC--------CCCCccccccccChhH
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA--------EVGGHILSGAVIDPIA   77 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~--------~~~g~~~~~~~~~~~~   77 (182)
                      .||++||||||+|+++|+.|++      .|.+|+|||+..        ..||...+-++++.+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~------~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~   62 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAA------HGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKL   62 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHh------CCCeEEEEeccCCCCccccccccceeccccccchHH
Confidence            5899999999999999999999      899999999732        2555544555555443

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.16  E-value=9.9e-10  Score=84.47  Aligned_cols=88  Identities=26%  Similarity=0.415  Sum_probs=60.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      ...+||+|||||++|+++|+.|++      .|++|+|||.  ..||....                 .           .
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~------~G~~v~li~~--~~GG~~~~-----------------~-----------~  253 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAAR------KGLRTAMVAE--RIGGQVKD-----------------T-----------V  253 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEec--CCCCcccc-----------------C-----------c
Confidence            345899999999999999999999      8999999975  34442210                 0           0


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG  161 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~  161 (182)
                      .+.        .+...   +       .....++.+.+.+.+++.|++++.+++|+++..++
T Consensus       254 ~~~--------~~~~~---~-------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~  297 (515)
T TIGR03140       254 GIE--------NLISV---P-------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETED  297 (515)
T ss_pred             Ccc--------ccccc---C-------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC
Confidence            000        00000   0       01234678888888888899999999999987644

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.16  E-value=8.8e-10  Score=81.65  Aligned_cols=150  Identities=18%  Similarity=0.226  Sum_probs=86.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc-cccccc----Ch-hHHhhhhhhHHhcCCCCCccch
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI-LSGAVI----DP-IALNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~-~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~   97 (182)
                      ||+|||+|++||++|+.|++      . .+|+||-|.+...+++ ++.+.+    .. +.......+-...+..+++...
T Consensus         9 dV~IiGsG~AGL~~AL~L~~------~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~a   81 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAP------S-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEA   81 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCC------C-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHH
Confidence            89999999999999999987      4 8999999998664333 233332    11 2233333333333334443321


Q ss_pred             --------hhhHHHHHhhccCCCCCCC--CCCCCCCCcc----c-----cchHHHHHHHHHHHHH-cCcEEecCCcccee
Q psy2240          98 --------EDKFAYLTKSKRIGIPILP--GMPMNNHGNY----V-----VRLGHVVKWLGEQAEA-MGVEIYPGIPASEV  157 (182)
Q Consensus        98 --------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~-----~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i  157 (182)
                              ...+.|+...+ ..++...  .+.....++.    .     -....+...|.+++++ ++++++.++.+.++
T Consensus        82 V~~iv~~~~~ai~~Li~~G-v~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~l  160 (518)
T COG0029          82 VEFIVSEAPEAIEWLIDLG-VPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDL  160 (518)
T ss_pred             HHHHHHhHHHHHHHHHHcC-CCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhh
Confidence                    23344443322 2222111  0111111111    1     2346789999999977 78999999999998


Q ss_pred             EEcCCCcEEEEE------------eCCEEEecCCCC
Q psy2240         158 LYHGDGSVKGIA------------TGDVGIAKDGSP  181 (182)
Q Consensus       158 ~~~~~g~~~~v~------------~~~~vi~adG~~  181 (182)
                      ..+++..+.|+.            +..+|++++|..
T Consensus       161 i~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g  196 (518)
T COG0029         161 IIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLG  196 (518)
T ss_pred             hhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCc
Confidence            874442332432            346677777753

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.14  E-value=2e-09  Score=61.99  Aligned_cols=77  Identities=29%  Similarity=0.373  Sum_probs=61.2

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHHH
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAY  103 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (182)
                      .++|||||+.|+-+|..|++      .|.+|++|++.+.+.. .                                    
T Consensus         1 ~vvViGgG~ig~E~A~~l~~------~g~~vtli~~~~~~~~-~------------------------------------   37 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAE------LGKEVTLIERSDRLLP-G------------------------------------   37 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHH------TTSEEEEEESSSSSST-T------------------------------------
T ss_pred             CEEEECcCHHHHHHHHHHHH------hCcEEEEEeccchhhh-h------------------------------------
Confidence            38999999999999999999      8999999999875430 0                                    


Q ss_pred             HHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe
Q psy2240         104 LTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT  170 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~  170 (182)
                              +                 ...+...+.+.+++.|+++++++.+++++.++++ +. |..
T Consensus        38 --------~-----------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~   77 (80)
T PF00070_consen   38 --------F-----------------DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL   77 (80)
T ss_dssp             --------S-----------------SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred             --------c-----------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence                    0                 0145667777788889999999999999987777 44 443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR02053 MerA mercuric reductase

Probab=99.14  E-value=1.7e-09  Score=82.23  Aligned_cols=52  Identities=31%  Similarity=0.476  Sum_probs=43.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL   81 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~   81 (182)
                      |||+||||||+|+++|+.|++      .|++|+|+|+.+ .||...+-++++++.+...
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~------~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~   52 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAE------LGASVAMVERGP-LGGTCVNVGCVPSKMLLRA   52 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCc-ccCCeeeecEEccHHHHHH
Confidence            699999999999999999999      899999999976 6776666677766665443

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK14727 putative mercuric reductase; Provisional

Probab=99.14  E-value=2.6e-09  Score=81.55  Aligned_cols=55  Identities=27%  Similarity=0.402  Sum_probs=47.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNE   80 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~   80 (182)
                      ...+|++|||+|++|+++|..|++      .|.+|+|+|+....||...+.++++++.+..
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~------~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~   68 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAE------HGARVTIIEGADVIGGCCVNVGCVPSKILIR   68 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHh------CCCeEEEEEccCcceeEeccccccccHHHHH
Confidence            456899999999999999999999      8999999999877888877777777666543

>KOG0042|consensus

Probab=99.13  E-value=3.8e-11  Score=89.37  Aligned_cols=42  Identities=33%  Similarity=0.505  Sum_probs=38.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      .++||+|||||.+|..+|+..+.      +|++|.++|++.+..|.++
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~T------RGLktaLVE~~DF~SGTSS  107 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAAT------RGLKTALVEAGDFASGTSS  107 (680)
T ss_pred             CcccEEEECCCccCcceeehhhc------ccceeEEEecccccCCccc
Confidence            35899999999999999999998      9999999999998887665

>KOG2404|consensus

Probab=99.12  E-value=9.2e-10  Score=77.55  Aligned_cols=151  Identities=23%  Similarity=0.276  Sum_probs=83.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccc--ccc-ChhHHhhhhhhHHhcCCCC--------
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG--AVI-DPIALNELLPDWKDLGAPL--------   92 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~--~~~-~~~~~~~~~~~~~~~~~~~--------   92 (182)
                      .++|||+|.+||+++..+-.      .|-.|+++|+....||++..+  +.. .....++.++..+.....+        
T Consensus        11 pvvVIGgGLAGLsasn~iin------~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~sak   84 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIIN------KGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAK   84 (477)
T ss_pred             cEEEECCchhhhhhHHHHHh------cCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcc
Confidence            69999999999999999988      566699999999999876421  111 1111111111000000000        


Q ss_pred             ----------CccchhhhHHHHHhhccCCCCCCC---C--CCCC-CCCccccchHHHHHHHHHHHHHc------CcEEec
Q psy2240          93 ----------NTPVHEDKFAYLTKSKRIGIPILP---G--MPMN-NHGNYVVRLGHVVKWLGEQAEAM------GVEIYP  150 (182)
Q Consensus        93 ----------~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~-~~~~~~~~~~~l~~~l~~~~~~~------gv~i~~  150 (182)
                                ........+.|+....++.+..+.   .  .|.. +...-..+...+...|...+++.      -++|..
T Consensus        85 sk~~~eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~  164 (477)
T KOG2404|consen   85 SKGVPELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILL  164 (477)
T ss_pred             cCCcHHHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhh
Confidence                      001122344555443333222111   1  1111 11122334457777777776552      288999


Q ss_pred             CCccceeEEcCCCcEEEEEe------------CCEEEecCCCC
Q psy2240         151 GIPASEVLYHGDGSVKGIAT------------GDVGIAKDGSP  181 (182)
Q Consensus       151 ~~~v~~i~~~~~g~~~~v~~------------~~~vi~adG~~  181 (182)
                      +++|++|.. .+|.+.+|..            ..+|.+++|-.
T Consensus       165 nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~  206 (477)
T KOG2404|consen  165 NSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFG  206 (477)
T ss_pred             cceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcC
Confidence            999999985 6677777543            35666666643

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.11  E-value=1.2e-10  Score=88.85  Aligned_cols=42  Identities=43%  Similarity=0.631  Sum_probs=38.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      +.+||+|||||+.||++|..|++      +|++|+|+||...+||..+
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~------~G~~V~VlE~~~~~GG~a~   43 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLAR------AGLKVTVLEKNDRVGGRAR   43 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHh------CCCEEEEEEecCCCCcceE
Confidence            45799999999999999999999      9999999999999888553

>PRK13748 putative mercuric reductase; Provisional

Probab=99.10  E-value=4.4e-09  Score=81.88  Aligned_cols=54  Identities=24%  Similarity=0.435  Sum_probs=45.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL   81 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~   81 (182)
                      ..+|++|||||++|+++|+.|++      .|++|+|||+. ..||...+-++++++.+...
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~------~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~  150 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVE------QGARVTLIERG-TIGGTCVNVGCVPSKIMIRA  150 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh------CCCeEEEEecC-cceeeccccCccccHHHHHH
Confidence            35899999999999999999999      89999999997 67887766777766665433

>PRK09897 hypothetical protein; Provisional

Probab=99.09  E-value=5.7e-09  Score=80.02  Aligned_cols=38  Identities=34%  Similarity=0.596  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      .+|+|||||++|+++|.+|.+.    +..++|+|+|+...+|
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~----~~~l~V~lfEp~~~~G   39 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQ----QTPLSISIFEQADEAG   39 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhc----CCCCcEEEEecCCCCC
Confidence            3799999999999999999872    1346999999987666

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.09  E-value=1.5e-09  Score=82.78  Aligned_cols=56  Identities=18%  Similarity=0.340  Sum_probs=47.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCC-CceEEEEecC--------CCCCCccccccccChhHHhhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGK-ELKVCLVEKA--------AEVGGHILSGAVIDPIALNELL   82 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~~v~vlE~~--------~~~~g~~~~~~~~~~~~~~~~~   82 (182)
                      .+||++|||||++|..+|+.+++      . |.+|+|||+.        ...||...+-++++++.+.+..
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~------~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a   66 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAAT------LYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGA   66 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHH------hcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHH
Confidence            46899999999999999999999      6 8999999984        3578877788888888775553

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.09  E-value=5.1e-09  Score=79.95  Aligned_cols=54  Identities=26%  Similarity=0.439  Sum_probs=43.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC--------CCCCccccccccChhHHhhh
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA--------EVGGHILSGAVIDPIALNEL   81 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~--------~~~g~~~~~~~~~~~~~~~~   81 (182)
                      .||++|||+|++|..+|+.+++      .|.+|++||+..        ..||...+-++++++.+...
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~------~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~   63 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAAD------YGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQA   63 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHH
Confidence            5899999999999999999999      899999999742        35665566677777665443

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=99.08  E-value=8.3e-10  Score=82.68  Aligned_cols=144  Identities=17%  Similarity=0.213  Sum_probs=81.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      ..+||+|||||.+|+-+|++.+|      .|.+++++--....-|..++...+.-...-.+....+..+         ..
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaAR------mG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALG---------G~   67 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAAR------MGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALG---------GL   67 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhc------cCCeEEEEEcCCCceeecccccccCCcccceeEEeehhcc---------ch
Confidence            45899999999999999999999      8999999988765444333322211100000011111111         11


Q ss_pred             HHHHHhhccCCCCCCC--CCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEEEeC------
Q psy2240         101 FAYLTKSKRIGIPILP--GMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIATG------  171 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v~~~------  171 (182)
                      +.........++..+.  ..|.-+....++++..+.+++.+.++. .+..++. ..|+++..+++..++||.+.      
T Consensus        68 Mg~~~D~~~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q-~~v~dli~e~~~~v~GV~t~~G~~~~  146 (621)
T COG0445          68 MGKAADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQ-GEVEDLIVEEGQRVVGVVTADGPEFH  146 (621)
T ss_pred             HHHhhhhcCCchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehH-hhhHHHhhcCCCeEEEEEeCCCCeee
Confidence            2222222223332221  122222224567788888888888876 4677765 47888876343357776653      


Q ss_pred             -CEEEecCCC
Q psy2240         172 -DVGIAKDGS  180 (182)
Q Consensus       172 -~~vi~adG~  180 (182)
                       +.||-+.|.
T Consensus       147 a~aVVlTTGT  156 (621)
T COG0445         147 AKAVVLTTGT  156 (621)
T ss_pred             cCEEEEeecc
Confidence             556655553

>KOG0029|consensus

Probab=99.08  E-value=2.7e-10  Score=86.48  Aligned_cols=43  Identities=33%  Similarity=0.568  Sum_probs=38.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      .+..+|+|||||++|+++|.+|.+      .|++|+|||++...||+..
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~------~G~~V~VLEARdRvGGRI~   55 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQD------FGFDVLVLEARDRVGGRIY   55 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHH------cCCceEEEeccCCcCceeE
Confidence            345689999999999999999999      8999999999999998653

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.08  E-value=2.4e-10  Score=83.24  Aligned_cols=141  Identities=23%  Similarity=0.296  Sum_probs=70.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC---CccccccccChhHHhhhhhhHHhcCCCCCccchh
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG---GHILSGAVIDPIALNELLPDWKDLGAPLNTPVHE   98 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (182)
                      .+|+++||.||++|++|..|...     ...+++.|||.+...   |....+..+....+       ..... ..++-.+
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~-----~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl-------~Dlvt-~~~P~s~   68 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEH-----GDLKALFLERRPSFSWHPGMLLPGARMQVSFL-------KDLVT-LRDPTSP   68 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHH-----H---EEEEES-SS--TTGGG--SS-B-SS-TT-------SSSST-TT-TTST
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhc-----CCCCEEEEecCCCCCcCCccCCCCCccccccc-------cccCc-CcCCCCc
Confidence            47999999999999999999984     258999999987532   11112222221111       11110 1111111


Q ss_pred             hhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC----cEE--------
Q psy2240          99 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG----SVK--------  166 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g----~~~--------  166 (182)
                      ..+..+......-.+      +...+...+.|.++.+++...+++.+-.+.++.+|++|+...++    ..+        
T Consensus        69 ~sflnYL~~~~rl~~------f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~  142 (341)
T PF13434_consen   69 FSFLNYLHEHGRLYE------FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGD  142 (341)
T ss_dssp             TSHHHHHHHTT-HHH------HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-
T ss_pred             ccHHHHHHHcCChhh------hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCC
Confidence            122112111110000      01111445678899999999998888669999999999875543    111        


Q ss_pred             --EEEeCCEEEecCCCC
Q psy2240         167 --GIATGDVGIAKDGSP  181 (182)
Q Consensus       167 --~v~~~~~vi~adG~~  181 (182)
                        .+.++++||+.++.|
T Consensus       143 ~~~~~ar~vVla~G~~P  159 (341)
T PF13434_consen  143 GETYRARNVVLATGGQP  159 (341)
T ss_dssp             EEEEEESEEEE----EE
T ss_pred             eeEEEeCeEEECcCCCC
Confidence              134567888887665

>PRK10262 thioredoxin reductase; Provisional

Probab=99.07  E-value=5.2e-09  Score=76.00  Aligned_cols=38  Identities=34%  Similarity=0.620  Sum_probs=33.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG   65 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g   65 (182)
                      ..+||+||||||+|+++|..|++      .|.++++||+. ..+|
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~------~g~~~~~ie~~-~~gg   42 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAAR------ANLQPVLITGM-EKGG   42 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH------CCCCeEEEEee-cCCC
Confidence            45799999999999999999999      89999999965 4444

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=99.06  E-value=1.8e-08  Score=65.56  Aligned_cols=143  Identities=16%  Similarity=0.172  Sum_probs=72.6

Q ss_pred             EEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccch-hhhHHHH
Q psy2240          26 VIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVH-EDKFAYL  104 (182)
Q Consensus        26 ~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  104 (182)
                      +|||+|++|++++.+|.+.. ......+|+|+|+.+...|....... ....+...    ............ .....|+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~-~~~~~~~I~vfd~~~~G~G~~~~~~~-~~~~llN~----~a~~~s~~~~~~~~~f~~Wl   74 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQA-DPKPPLEITVFDPSPFGAGGAYRPDQ-PPSHLLNT----PADQMSLFPDDPGDDFVDWL   74 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCccccccCCCCC-ChHHhhcc----cccccccccccCCCCHHHHH
Confidence            59999999999999999843 11246899999997652132221110 11111100    000000111111 2344455


Q ss_pred             HhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH------cCcEEe-cCCccceeEEcCCCcEEE-----EEeCC
Q psy2240         105 TKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA------MGVEIY-PGIPASEVLYHGDGSVKG-----IATGD  172 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~gv~i~-~~~~v~~i~~~~~g~~~~-----v~~~~  172 (182)
                      .......       .........++|..+-++|.+..+.      .+++|. ...+|++|...+++..+.     ....+
T Consensus        75 ~~~~~~~-------~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d  147 (156)
T PF13454_consen   75 RANGADE-------AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRAD  147 (156)
T ss_pred             HhcCccc-------ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeC
Confidence            4443200       0011113345555555555554333      244443 356999998866665331     23457


Q ss_pred             EEEecCCCC
Q psy2240         173 VGIAKDGSP  181 (182)
Q Consensus       173 ~vi~adG~~  181 (182)
                      .||.|.|++
T Consensus       148 ~VvLa~Gh~  156 (156)
T PF13454_consen  148 AVVLATGHQ  156 (156)
T ss_pred             EEEECCCCC
Confidence            788888875

>PRK07208 hypothetical protein; Provisional

Probab=99.03  E-value=3.9e-10  Score=86.08  Aligned_cols=42  Identities=38%  Similarity=0.617  Sum_probs=38.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      +...||+|||||++||++|+.|++      +|++|+|+|+.+..||..
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~------~g~~v~v~E~~~~~GG~~   43 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLK------RGYPVTVLEADPVVGGIS   43 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCcee
Confidence            456799999999999999999999      899999999999988864

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.03  E-value=5.6e-10  Score=84.41  Aligned_cols=48  Identities=29%  Similarity=0.459  Sum_probs=39.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC-CCCccccccccC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE-VGGHILSGAVID   74 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~-~~g~~~~~~~~~   74 (182)
                      ..|||+|||||++|+++|+.|++      +|.+|+|||+.+. .||...+.+++.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~------~g~~V~lie~~~~~~GG~~~~~gcip   50 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAK------AGWRVALIEQSNAMYGGTCINIGCIP   50 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHH------CCCeEEEEcCCCCccceeEeeccccc
Confidence            46899999999999999999999      8999999999863 566554444443

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.02  E-value=1.8e-08  Score=76.78  Aligned_cols=49  Identities=31%  Similarity=0.540  Sum_probs=42.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHh
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN   79 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~   79 (182)
                      |++|||+|++|+.+|..+++      .|.+|+|+|+.+ .||.....++++.+.+.
T Consensus         3 ~vvviG~G~~G~~~a~~~~~------~g~~v~~~e~~~-~gG~c~~~gciPsK~l~   51 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQ------LGADVTVIERDG-LGGAAVLTDCVPSKTLI   51 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHh------CCCeEEEEEccC-CCCcccccCCcchHHHH
Confidence            79999999999999999999      899999999975 67777677777666554

>KOG2852|consensus

Probab=99.01  E-value=1.9e-09  Score=74.83  Aligned_cols=137  Identities=20%  Similarity=0.222  Sum_probs=73.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc-----Chh-------HHhhhhhhHHh--
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI-----DPI-------ALNELLPDWKD--   87 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~-----~~~-------~~~~~~~~~~~--   87 (182)
                      ...|+|||||+.|+.+|+.|++.-..+.--+.|+++|+....++++..++.+     .++       ...++...+..  
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdey   89 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEY   89 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhh
Confidence            3679999999999999999999211111117899999998776655422211     110       00111111111  


Q ss_pred             -----cCCCCCc-c------------chhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC-cEE
Q psy2240          88 -----LGAPLNT-P------------VHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG-VEI  148 (182)
Q Consensus        88 -----~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-v~i  148 (182)
                           .++...+ .            ..++.+.|+..........+.    ......++|+..|.+.+...+++.+ |++
T Consensus        90 dGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG----~t~ttaqvhP~lFc~~i~sea~k~~~V~l  165 (380)
T KOG2852|consen   90 DGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIG----STNTTAQVHPYLFCHFILSEAEKRGGVKL  165 (380)
T ss_pred             cCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheecc----CCCccceeCHHHHHHHHHHHHHhhcCeEE
Confidence                 1111000 0            011223333322111111111    1223568999999999999998865 999


Q ss_pred             ecCCccceeEEcCCCc
Q psy2240         149 YPGIPASEVLYHGDGS  164 (182)
Q Consensus       149 ~~~~~v~~i~~~~~g~  164 (182)
                      .++ .|+++. ++.++
T Consensus       166 v~G-kv~ev~-dEk~r  179 (380)
T KOG2852|consen  166 VFG-KVKEVS-DEKHR  179 (380)
T ss_pred             EEe-eeEEee-ccccc
Confidence            887 666665 34443

>KOG1335|consensus

Probab=99.00  E-value=3.7e-09  Score=76.07  Aligned_cols=58  Identities=40%  Similarity=0.498  Sum_probs=50.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPD   84 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~   84 (182)
                      .++|++|||+||.|-.+|+..++      .|++++++|++...||...+-++++++.++..-+.
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQ------lGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~   95 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQ------LGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHL   95 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHH------hcceeEEEeccCccCceeeeccccccHHHhhhhHH
Confidence            46999999999999999999999      89999999999999998888888888776544333

>KOG2853|consensus

Probab=98.99  E-value=1.9e-08  Score=71.64  Aligned_cols=42  Identities=36%  Similarity=0.526  Sum_probs=35.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ...+||+|||||..|+++|+.|.+.  .+..|++|+|+||+.--
T Consensus        84 ~~~~dVvIIGGG~~GsS~AfWLKer--~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   84 PYHCDVVIIGGGGSGSSTAFWLKER--ARDEGLNVVVVERDDTY  125 (509)
T ss_pred             ccccCEEEECCCccchhhHHHHHHH--hhcCCceEEEEeccCcc
Confidence            4578999999999999999999873  33357999999999743

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.99  E-value=1.3e-08  Score=83.66  Aligned_cols=40  Identities=43%  Similarity=0.731  Sum_probs=36.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      ..+||+||||||+|+++|+.|++      .|++|+|+|+.+..+|.
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar------~G~~V~liD~~~~~GG~  201 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAAR------AGARVILVDEQPEAGGS  201 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCCCCCe
Confidence            35799999999999999999999      89999999999887753

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.98  E-value=9.1e-09  Score=76.57  Aligned_cols=36  Identities=39%  Similarity=0.446  Sum_probs=32.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      +||+|||||++|+.+|+.|++      .|++|+|+|+.+..+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr------~G~~V~LiE~rp~~~   36 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQ------AGVPVILYEMRPEKL   36 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHh------CCCcEEEEecccccc
Confidence            479999999999999999999      899999999887643

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.97  E-value=1.6e-09  Score=82.35  Aligned_cols=49  Identities=39%  Similarity=0.590  Sum_probs=40.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI   76 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~   76 (182)
                      ..|||+|||||++|+++|..|++      .|.+|+|||+ ...||....-++++++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~------~g~~v~lie~-~~~GG~~~~~gc~psk   50 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAK------LGKKVALIEK-GPLGGTCLNVGCIPSK   50 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHH------CCCeEEEEeC-CccccceeccceeeHH
Confidence            45899999999999999999999      8999999999 4567765555555443

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.97  E-value=4.7e-09  Score=74.57  Aligned_cols=36  Identities=36%  Similarity=0.579  Sum_probs=33.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .++|++|||+|.+||.+|.+|+.      +|.+|+++|+...
T Consensus         4 ~~~dvivvgaglaglvaa~elA~------aG~~V~ildQEge   39 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELAD------AGKRVLILDQEGE   39 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHh------cCceEEEEccccc
Confidence            46899999999999999999999      9999999998864

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.95  E-value=2.1e-08  Score=76.30  Aligned_cols=52  Identities=37%  Similarity=0.597  Sum_probs=43.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhh
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELL   82 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~   82 (182)
                      +++|||||++|+++|..|++      .|.+|+||||.+ .||...+.++++++.+.+..
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~------~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a   53 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQ------NGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESA   53 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHh------CCCcEEEEECCc-ccccCCCCccccchHHHHHH
Confidence            69999999999999999999      899999999975 67776677788777665443

>PRK12831 putative oxidoreductase; Provisional

Probab=98.94  E-value=4.2e-09  Score=80.01  Aligned_cols=40  Identities=33%  Similarity=0.518  Sum_probs=35.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      ...||+|||||++|+++|+.|++      .|++|+|+|+.+.+||.
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~------~G~~V~v~e~~~~~GG~  178 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAK------MGYDVTIFEALHEPGGV  178 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh------CCCeEEEEecCCCCCCe
Confidence            45699999999999999999999      89999999998877653

>PLN02268 probable polyamine oxidase

Probab=98.93  E-value=1.5e-09  Score=81.93  Aligned_cols=39  Identities=41%  Similarity=0.740  Sum_probs=36.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      +|+|||||++||++|+.|.+      .|++|+|||+++..||+..
T Consensus         2 ~VvVIGaGisGL~aA~~L~~------~g~~v~vlEa~~r~GGri~   40 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHD------ASFKVTLLESRDRIGGRVH   40 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHh------CCCeEEEEeCCCCCCceee
Confidence            79999999999999999999      8999999999999998754

>PLN02576 protoporphyrinogen oxidase

Probab=98.93  E-value=1.5e-09  Score=83.26  Aligned_cols=42  Identities=40%  Similarity=0.618  Sum_probs=37.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCC-CceEEEEecCCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGK-ELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~~v~vlE~~~~~~g~~~   68 (182)
                      ...||+|||||++||++|+.|++      . |.+|+|+|+.+..||...
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~------~~g~~v~vlEa~~rvGGr~~   53 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALAS------KHGVNVLVTEARDRVGGNIT   53 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH------hcCCCEEEEecCCCCCCcee
Confidence            34589999999999999999999      7 899999999999998653

>TIGR02730 carot_isom carotene isomerase

Probab=98.93  E-value=1.6e-09  Score=83.01  Aligned_cols=40  Identities=30%  Similarity=0.459  Sum_probs=37.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      +||+|||+|++|+++|..|++      +|.+|+||||+..+||...
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~------~G~~V~vlE~~~~~GG~~~   40 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAV------KGAKVLVLERYLIPGGSAG   40 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHH------CCCcEEEEECCCCCCCcee
Confidence            589999999999999999999      8999999999998887654

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG3855|consensus

Probab=98.92  E-value=1.5e-08  Score=73.62  Aligned_cols=154  Identities=19%  Similarity=0.176  Sum_probs=86.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC--CCCCCccc--------cccccChhHHhhhhhhHHhcCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA--AEVGGHIL--------SGAVIDPIALNELLPDWKDLGAP   91 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~--~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~   91 (182)
                      .+||+|||||++|++.|..|..  ++....++|.++|..  +..+.--.        +.....+..+.+.++.|......
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~s--np~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~  113 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGS--NPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHD  113 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhcc--CCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhh
Confidence            6899999999999999999985  555556799999998  33322111        11122333445556667665433


Q ss_pred             CCccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHH--HH-HHcCcEEecCCccceeEE------cCC
Q psy2240          92 LNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGE--QA-EAMGVEIYPGIPASEVLY------HGD  162 (182)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~-~~~gv~i~~~~~v~~i~~------~~~  162 (182)
                      ...++....  .++....-.+.. ...+.....++.+....+...|..  .. +..++++.+.+++.++..      ++.
T Consensus       114 R~~~~~~~~--v~Ds~s~a~I~~-~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n  190 (481)
T KOG3855|consen  114 RYQKFSRML--VWDSCSAALILF-DHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDN  190 (481)
T ss_pred             cccccccee--eecccchhhhhh-ccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCC
Confidence            333322110  000000000000 000111112566666677777773  33 235799999999887755      233


Q ss_pred             CcEEE-------EEeCCEEEecCCC
Q psy2240         163 GSVKG-------IATGDVGIAKDGS  180 (182)
Q Consensus       163 g~~~~-------v~~~~~vi~adG~  180 (182)
                      +-+..       ....+++|+|||.
T Consensus       191 ~~~~~i~l~dg~~~~~~LLigAdg~  215 (481)
T KOG3855|consen  191 GMWFHITLTDGINFATDLLIGADGF  215 (481)
T ss_pred             cceEEEEeccCceeeeceeeccccc
Confidence            33332       3456999999996

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.92  E-value=1.5e-09  Score=82.33  Aligned_cols=39  Identities=41%  Similarity=0.742  Sum_probs=35.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCCCCCCccc
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~~~~g~~~   68 (182)
                      +|+|||||++||++|+.|++      .|  .+|+|+|+++..||...
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~------~G~~~~V~vlEa~~~~GGr~~   42 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHK------KGPDADITLLEASDRLGGKIQ   42 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHH------hCCCCCEEEEEcCCCCcceEE
Confidence            59999999999999999999      67  89999999999998653

>PRK07233 hypothetical protein; Provisional

Probab=98.92  E-value=1.8e-09  Score=81.39  Aligned_cols=38  Identities=42%  Similarity=0.693  Sum_probs=35.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      +|+|||||++||++|+.|++      .|++|+|+|+.+.+||..
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~------~G~~v~vlE~~~~~GG~~   38 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAK------RGHEVTVFEADDQLGGLA   38 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHH------CCCcEEEEEeCCCCCCce
Confidence            58999999999999999999      899999999999999865

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.92  E-value=1.9e-09  Score=82.59  Aligned_cols=39  Identities=38%  Similarity=0.646  Sum_probs=36.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      .||+|||||++||++|..|++      +|++|+|+||++.+||..
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~------~G~~v~vlE~~~~~GG~~   40 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAK------RGYRVTLLEQHAQPGGCA   40 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCCCcc
Confidence            589999999999999999999      899999999999888754

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.92  E-value=1.6e-09  Score=82.37  Aligned_cols=40  Identities=43%  Similarity=0.729  Sum_probs=36.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCC----CceEEEEecCCCCCCccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGK----ELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~----g~~v~vlE~~~~~~g~~~   68 (182)
                      .||+|||||++||++|+.|++      .    |.+|+|+|+++..||...
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~------~~~~~g~~v~vlE~~~r~GG~~~   46 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEK------EIPELPVELTLVEASDRVGGKIQ   46 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHh------cCCCCCCcEEEEEcCCcCcceEE
Confidence            589999999999999999999      6    899999999999887643

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>KOG0405|consensus

Probab=98.89  E-value=6.1e-08  Score=69.21  Aligned_cols=138  Identities=24%  Similarity=0.315  Sum_probs=80.3

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh------HHhhhhhhHHhcCCC
Q psy2240          18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI------ALNELLPDWKDLGAP   91 (182)
Q Consensus        18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~   91 (182)
                      .....+|.+|||||-.|++.|...+.      .|.++.|+|..-..||....-++.+.+      .+...+.+-..++.+
T Consensus        16 ~~~k~fDylvIGgGSGGvasARrAa~------~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~   89 (478)
T KOG0405|consen   16 ADVKDFDYLVIGGGSGGVASARRAAS------HGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFP   89 (478)
T ss_pred             ccccccceEEEcCCcchhHHhHHHHh------cCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCc
Confidence            33568999999999999999999999      899999999876777766665654332      222223332333322


Q ss_pred             CCccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCc-c-----ceeEEcCCCcE
Q psy2240          92 LNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIP-A-----SEVLYHGDGSV  165 (182)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~-v-----~~i~~~~~g~~  165 (182)
                      .+.....+ +..+...               ...+ +  .+|.....+.+.+.++.++.+.. +     .+++. .++..
T Consensus        90 ~~~~~~fd-W~~ik~k---------------rday-i--~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~-~d~~~  149 (478)
T KOG0405|consen   90 INEEGSFD-WKVIKQK---------------RDAY-I--LRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEV-NDGTK  149 (478)
T ss_pred             cccccCCc-HHHHHhh---------------hhHH-H--HHHHHHHHhhccccceeEEeeeEEEcCCCceEEEe-cCCee
Confidence            22111111 0111000               0011 1  24555555666666788777642 2     23343 23333


Q ss_pred             EEEEeCCEEEecCCCC
Q psy2240         166 KGIATGDVGIAKDGSP  181 (182)
Q Consensus       166 ~~v~~~~~vi~adG~~  181 (182)
                      ....+..++|+.+|.|
T Consensus       150 ~~Ytak~iLIAtGg~p  165 (478)
T KOG0405|consen  150 IVYTAKHILIATGGRP  165 (478)
T ss_pred             EEEecceEEEEeCCcc
Confidence            3356678899999986

>KOG2665|consensus

Probab=98.89  E-value=1.5e-08  Score=71.37  Aligned_cols=139  Identities=23%  Similarity=0.336  Sum_probs=79.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc--------cccccChhHHhhh---------hh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL--------SGAVIDPIALNEL---------LP   83 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~--------~~~~~~~~~~~~~---------~~   83 (182)
                      ..+|++|||||++|++.|.+|.-    +.++++|.|||+....+-..+        ++-...+..+...         +.
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~l----rhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~  122 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSL----RHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYE  122 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhh----cCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHH
Confidence            46899999999999999999987    235899999999986552211        1111122221111         11


Q ss_pred             hHHhcCCCCCc------cchhhh-------HHHHHhhccCCCCCCCC-------------CCCCCCCccccchHHHHHHH
Q psy2240          84 DWKDLGAPLNT------PVHEDK-------FAYLTKSKRIGIPILPG-------------MPMNNHGNYVVRLGHVVKWL  137 (182)
Q Consensus        84 ~~~~~~~~~~~------~~~~~~-------~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~l  137 (182)
                      ...+...++-.      ....+.       +..-..+...++..+..             .....+....++.+.+...+
T Consensus       123 yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~  202 (453)
T KOG2665|consen  123 YCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSF  202 (453)
T ss_pred             HhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHH
Confidence            11122211110      000111       11111122111111111             11233446678888999999


Q ss_pred             HHHHHHcCcEEecCCccceeEEcCCC
Q psy2240         138 GEQAEAMGVEIYPGIPASEVLYHGDG  163 (182)
Q Consensus       138 ~~~~~~~gv~i~~~~~v~~i~~~~~g  163 (182)
                      .+..+..|.++..+-++..+.++.++
T Consensus       203 ~edF~~~gg~i~~n~~l~g~~~n~~~  228 (453)
T KOG2665|consen  203 GEDFDFMGGRIYTNFRLQGIAQNKEA  228 (453)
T ss_pred             HHHHHHhcccccccceeccchhccCC
Confidence            99999999999999999999875553

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.87  E-value=3.4e-09  Score=79.60  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=40.0

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      |+.++||+|||+|.+|+.+|..|++      .|.+|+++||++..||...
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~------~GkkVLhlD~n~~yGG~~a   44 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSV------NGKKVLHMDRNPYYGGESA   44 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhh------CCCEEEEecCCCCcCcccc
Confidence            4567999999999999999999999      9999999999998887654

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.86  E-value=3.1e-09  Score=81.64  Aligned_cols=38  Identities=37%  Similarity=0.584  Sum_probs=35.2

Q ss_pred             EEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      |+|||||++||++|..|++      .|++|+|||++..+||...
T Consensus         1 vvVIGaG~~GL~aA~~La~------~G~~V~VlE~~~~~GG~~~   38 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAA------AGIPVTVVEQRDKPGGRAG   38 (502)
T ss_pred             CEEECcCHHHHHHHHHHHh------CCCcEEEEECCCCCcCceE
Confidence            6899999999999999999      8999999999999988643

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.83  E-value=7.2e-09  Score=76.25  Aligned_cols=43  Identities=44%  Similarity=0.671  Sum_probs=39.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      +..+||+|||+|.+||++|++|.+      .|++|+|+|.++..||++.
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~k------aG~~v~ilEar~r~GGR~~   47 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKK------AGYQVQILEARDRVGGRSL   47 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhh------cCcEEEEEeccCCcCceeE
Confidence            567899999999999999999999      8999999999999998764

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.83  E-value=6.9e-09  Score=76.36  Aligned_cols=39  Identities=38%  Similarity=0.556  Sum_probs=35.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      +|++|||||++|+++|..|++      .|.+|+|||+.+..||..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~------~G~~V~viEk~~~iGG~~   40 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQ------LNKRVLVVEKRNHIGGNC   40 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHh------CCCeEEEEecCCCCCCce
Confidence            599999999999999999998      899999999988777643

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>KOG2960|consensus

Probab=98.82  E-value=2.2e-08  Score=66.79  Aligned_cols=47  Identities=38%  Similarity=0.627  Sum_probs=39.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV   72 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~   72 (182)
                      +.||+|||+|-+||++||..++    +.+.++|.+||.+-.+||..+-++.
T Consensus        76 esDvviVGAGSaGLsAAY~I~~----~rPdlkvaIIE~SVaPGGGaWLGGQ  122 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAK----NRPDLKVAIIESSVAPGGGAWLGGQ  122 (328)
T ss_pred             ccceEEECCCccccceeeeeec----cCCCceEEEEEeeecCCCcccccch
Confidence            5699999999999999999986    2267899999999888876665444

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.80  E-value=6.6e-09  Score=76.91  Aligned_cols=41  Identities=41%  Similarity=0.733  Sum_probs=37.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..-+++|||||++|+++|+.|++      .|++|.|+||.+..||..
T Consensus       123 v~~svLVIGGGvAGitAAl~La~------~G~~v~LVEKepsiGGrm  163 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELAD------MGFKVYLVEKEPSIGGRM  163 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHH------cCCeEEEEecCCcccccH
Confidence            44589999999999999999999      899999999999998863

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=7.3e-09  Score=77.39  Aligned_cols=39  Identities=38%  Similarity=0.575  Sum_probs=36.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      .|+|+|||++||++|+.|++      +|++|+|+|+++..||...
T Consensus         2 rVai~GaG~AgL~~a~~La~------~g~~vt~~ea~~~~GGk~~   40 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELAD------AGYDVTLYEARDRLGGKVA   40 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHh------CCCceEEEeccCccCceee
Confidence            59999999999999999999      9999999999999998653

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.80  E-value=6.8e-09  Score=79.03  Aligned_cols=45  Identities=36%  Similarity=0.632  Sum_probs=35.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      +|+|||||++||++|+.|++.....+.|.+|+|||+++..||...
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~   47 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH   47 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence            599999999999999999981000012479999999999998754

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.79  E-value=9.2e-09  Score=78.12  Aligned_cols=38  Identities=29%  Similarity=0.456  Sum_probs=35.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      +|+|||||++|+++|+.|++      +|++|+|+|+.+..||..
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~------~G~~v~vlE~~~~~GG~~   38 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLAD------AGHTPIVLEARDVLGGKV   38 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCCCc
Confidence            48999999999999999999      899999999999888864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02568 polyamine oxidase

Probab=98.79  E-value=1.1e-08  Score=78.93  Aligned_cols=41  Identities=34%  Similarity=0.624  Sum_probs=36.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCC-----ceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE-----LKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-----~~v~vlE~~~~~~g~~   67 (182)
                      +..||+|||||++|+++|..|++      .|     ++|+|+|++..+||..
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~------~g~~~~~~~v~v~E~~~~~GGr~   49 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYT------SSAANDMFELTVVEGGDRIGGRI   49 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh------cccccCCceEEEEeCCCCcCCeE
Confidence            34699999999999999999998      56     8999999999888764

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.76  E-value=2.1e-08  Score=78.75  Aligned_cols=54  Identities=33%  Similarity=0.385  Sum_probs=46.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC-CCCCccccccccChhHHhhh
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA-EVGGHILSGAVIDPIALNEL   81 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~-~~~g~~~~~~~~~~~~~~~~   81 (182)
                      +||++|||+|++|..+|+.+++      .|.+|+|||+.. ..||....-++++++.+...
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~------~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~  170 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAME------RGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYA  170 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCCCccccceeEeCCcchHHHHHH
Confidence            6899999999999999999999      899999999753 57887778888887765444

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.74  E-value=1.4e-08  Score=75.80  Aligned_cols=38  Identities=42%  Similarity=0.754  Sum_probs=34.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCCCCCCcc
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAEVGGHI   67 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~~~~g~~   67 (182)
                      .|+|||||++||++|+.|++      .+  .+++|+|+++..||..
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k------~~p~~~i~lfE~~~r~GG~l   41 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQK------AGPDVEVTLFEADDRVGGLL   41 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHH------hCCCCcEEEEecCCCCCceE
Confidence            48999999999999999999      66  8999999999888754

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.71  E-value=8.8e-07  Score=66.46  Aligned_cols=43  Identities=28%  Similarity=0.399  Sum_probs=36.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      .++=|||+|+++|++|..|-|  +-+-+|-+|+|||+.+..||..
T Consensus         3 ~~AyivGsGiAsLAAAvfLIr--Da~~pg~nIhIlE~~~~~GGsl   45 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIR--DAKMPGENIHILEELDVPGGSL   45 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhc--cCCCCccceEEEeCCCCCCCcc
Confidence            357799999999999999988  4445678999999999887754

>KOG4716|consensus

Probab=98.71  E-value=6.6e-08  Score=68.85  Aligned_cols=36  Identities=25%  Similarity=0.404  Sum_probs=33.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...||.+|||||-+||++|-++++      .|.+|.+||--.
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~------~G~kV~~lDfV~   52 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAAD------LGAKVACLDFVK   52 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHh------cCCcEEEEeecc
Confidence            567999999999999999999999      899999999764

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.70  E-value=2.5e-08  Score=81.18  Aligned_cols=40  Identities=33%  Similarity=0.576  Sum_probs=36.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+|+||||||+|+++|+.|++      .|++|+|+|+.+.+||..
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr------~G~~VTV~Ek~~~lGG~l  576 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLAR------AGHPVTVFEKKEKPGGVV  576 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH------CCCeEEEEecccccCcee
Confidence            4689999999999999999999      899999999998888764

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.69  E-value=1.8e-08  Score=72.33  Aligned_cols=34  Identities=35%  Similarity=0.517  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~   62 (182)
                      ||+||||+|.+|+.+|..|++      .+ .+|+|||+++.
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~------~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSE------AGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTT------STTS-EEEEESSBS
T ss_pred             CCEEEECcCHHHHHHHHHHhh------CCCCcEEEEEcccc
Confidence            799999999999999999998      65 79999999975

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PLN02676 polyamine oxidase

Probab=98.68  E-value=3.5e-08  Score=75.42  Aligned_cols=42  Identities=29%  Similarity=0.609  Sum_probs=37.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCCCCcc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEVGGHI   67 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~~g~~   67 (182)
                      ...+||+|||||++||++|+.|++      .|. +|+|+|+....||..
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~------~g~~~v~vlE~~~~~GG~~   66 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSE------AGIEDILILEATDRIGGRM   66 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH------cCCCcEEEecCCCCCCCcc
Confidence            346799999999999999999999      888 699999999888754

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.68  E-value=3.1e-08  Score=75.54  Aligned_cols=38  Identities=34%  Similarity=0.577  Sum_probs=35.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      +|+|||||++|+++|+.|++      .|++|+|+|+.+..||..
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~------~G~~v~v~E~~~~~GG~~   38 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVD------AGHEVDIYESRSFIGGKV   38 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHH------CCCcEEEEEecCCCCcee
Confidence            48999999999999999999      899999999999888754

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.67  E-value=4.6e-08  Score=69.00  Aligned_cols=40  Identities=35%  Similarity=0.466  Sum_probs=37.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      +|++|||+|.+|+.+|..|++      .|.+|+|+||++..||+..
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~------~gk~VLIvekR~HIGGNaY   41 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQ------LGKRVLIVEKRNHIGGNAY   41 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHH------cCCEEEEEeccccCCCccc
Confidence            699999999999999999998      8999999999999998763

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.67  E-value=3.3e-08  Score=80.67  Aligned_cols=41  Identities=27%  Similarity=0.511  Sum_probs=37.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ..+|+||||||+||++|+.|++      .|++|+|+|+.+..||...
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar------~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAV------EGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH------CCCeEEEEeeCCCCCceEE
Confidence            4689999999999999999999      8999999999998887654

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.66  E-value=1.1e-07  Score=72.39  Aligned_cols=44  Identities=30%  Similarity=0.403  Sum_probs=37.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS   69 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~   69 (182)
                      ..+|+|||+||+|+++|..|++.    ..|.+|+|+|+.+.++|....
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~----~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKA----HDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhh----CCCCeEEEEecCCCCcceEee
Confidence            45899999999999999999851    158999999999998876553

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.65  E-value=2.2e-07  Score=70.45  Aligned_cols=36  Identities=44%  Similarity=0.725  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      +|+|||||++|+++|..|++.    +.+.+|+|||+.+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~----~~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRL----NKELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHH----CCCCcEEEEECCCcc
Confidence            599999999999999999883    134699999998754

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.65  E-value=2.2e-07  Score=67.64  Aligned_cols=143  Identities=17%  Similarity=0.241  Sum_probs=85.9

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC---CccccccccChhHHhhhhhhHHhcCCCCCcc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG---GHILSGAVIDPIALNELLPDWKDLGAPLNTP   95 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (182)
                      |+..+|++.||-||.-|++|+.|...     .+.+++.|||.+...   |....+..+....+    .++-.    +.++
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~-----~~~~~lFLerkp~F~WHpGmllegstlQv~Fl----kDLVT----l~~P   68 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEH-----SGLKSLFLERKPDFSWHPGMLLEGSTLQVPFL----KDLVT----LVDP   68 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccc-----cCcceEEEecCCCCCcCCCcccCCccccccch----hhhcc----ccCC
Confidence            34568999999999999999999883     348899999987543   22222222222222    11111    1122


Q ss_pred             chhhhHHHH-HhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC-cEE-------
Q psy2240          96 VHEDKFAYL-TKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG-SVK-------  166 (182)
Q Consensus        96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g-~~~-------  166 (182)
                      -....+-.+ ..+..+       +.+.......+.|.++.+++...+... -.++++++|++|...+.+ ...       
T Consensus        69 Ts~ySFLNYL~~h~RL-------y~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~  140 (436)
T COG3486          69 TSPYSFLNYLHEHGRL-------YEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN  140 (436)
T ss_pred             CCchHHHHHHHHcchH-------hhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCC
Confidence            222222222 122111       122333466888999999999999887 678999999966332222 111       


Q ss_pred             --EEEeCCEEEecCCCCC
Q psy2240         167 --GIATGDVGIAKDGSPK  182 (182)
Q Consensus       167 --~v~~~~~vi~adG~~~  182 (182)
                        ...++++||+.+..|+
T Consensus       141 ~~~y~ar~lVlg~G~~P~  158 (436)
T COG3486         141 GTVYRARNLVLGVGTQPY  158 (436)
T ss_pred             CcEEEeeeEEEccCCCcC
Confidence              1345689999998875

>KOG1238|consensus

Probab=98.64  E-value=4.9e-07  Score=69.49  Aligned_cols=40  Identities=33%  Similarity=0.532  Sum_probs=34.7

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ...+||.||||||-+||.+|..|++.     +..+|+|||++..+
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn-----~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSEN-----PNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccC-----CCceEEEEecCCCC
Confidence            35679999999999999999999983     45899999999654

>PLN02529 lysine-specific histone demethylase 1

Probab=98.63  E-value=8e-08  Score=76.20  Aligned_cols=41  Identities=39%  Similarity=0.568  Sum_probs=37.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ...||+|||||++|+++|..|++      +|++|+|+|+....||..
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~------~g~~v~v~E~~~~~GG~~  199 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLS------FGFKVVVLEGRNRPGGRV  199 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH------cCCcEEEEecCccCcCce
Confidence            45799999999999999999999      899999999998877754

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.63  E-value=6.3e-08  Score=65.50  Aligned_cols=33  Identities=52%  Similarity=0.886  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ||+|||||++|+++|..|++      .+.+|+++|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~------~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELAR------PGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHH------TTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhc------CCCeEEEEecccc
Confidence            79999999999999999998      8999999987653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.63  E-value=3e-06  Score=62.76  Aligned_cols=50  Identities=26%  Similarity=0.306  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE-------EeCCEEEecCCCC
Q psy2240         131 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-------ATGDVGIAKDGSP  181 (182)
Q Consensus       131 ~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v-------~~~~~vi~adG~~  181 (182)
                      ..+.+.+++.+++.|++|+++++|++|+. +++.+.++       +..+.||.|-|++
T Consensus       173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grs  229 (486)
T COG2509         173 PKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRS  229 (486)
T ss_pred             HHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcc
Confidence            46888999999999999999999999987 44444433       3357777777763

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.62  E-value=4e-08  Score=70.06  Aligned_cols=41  Identities=29%  Similarity=0.501  Sum_probs=36.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      +..+|+|||+|++||++|+.|++       -.+|+++|++...||.+.
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~-------rhdVTLfEA~~rlGGha~   47 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSR-------RHDVTLFEADRRLGGHAN   47 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhc-------ccceEEEeccccccCccc
Confidence            44589999999999999999998       379999999999998654

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.60  E-value=8.5e-08  Score=76.54  Aligned_cols=41  Identities=41%  Similarity=0.634  Sum_probs=37.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ...+|+|||||++|+++|+.|++      .|++|+|+|+...+||..
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~------~g~~v~v~E~~~r~GGr~  277 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLS------MGFKVVVLEGRARPGGRV  277 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH------CCCcEEEEeccccCCCcc
Confidence            45789999999999999999999      899999999999888764

>KOG2311|consensus

Probab=98.60  E-value=4.8e-07  Score=67.29  Aligned_cols=37  Identities=30%  Similarity=0.457  Sum_probs=33.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...+||+|||||-+|+-+|.+.++      -|.+++++-.+-.
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR------~Ga~TlLlT~~ld   62 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAAR------LGARTLLLTHNLD   62 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHh------cCCceEEeecccc
Confidence            457899999999999999999999      7999999987754

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.58  E-value=1.4e-07  Score=74.83  Aligned_cols=41  Identities=34%  Similarity=0.618  Sum_probs=36.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ...+|+|||+|++|+++|..|++      .|++|+|+|+.+..+|..
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~------~G~~V~V~E~~~~~GG~l  366 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLAR------NGVAVTVYDRHPEIGGLL  366 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCcee
Confidence            34689999999999999999999      899999999998887654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.58  E-value=1.4e-07  Score=71.65  Aligned_cols=41  Identities=32%  Similarity=0.542  Sum_probs=36.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ...+|+|||||++|+++|..|++      .|++|+|+|+.+.++|..
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~------~G~~V~vie~~~~~GG~l  172 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAK------AGHSVTVFEALHKPGGVV  172 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCcEe
Confidence            45799999999999999999999      899999999998777654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.58  E-value=1.3e-07  Score=77.78  Aligned_cols=41  Identities=39%  Similarity=0.580  Sum_probs=36.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ..+|+||||||+||++|..|++      .|++|+|+|+.+.+||...
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~------~G~~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVK------YGVDVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCCCcceee
Confidence            4689999999999999999999      8999999999988877543

>PLN02612 phytoene desaturase

Probab=98.57  E-value=1.1e-07  Score=74.03  Aligned_cols=40  Identities=35%  Similarity=0.488  Sum_probs=36.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+|+|||||++|+++|+.|++      +|++|+|+|+....||..
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~------~g~~~~~~e~~~~~gG~~  132 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLAD------AGHKPILLEARDVLGGKV  132 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHh------cCCeEEEEecCCCCCCcc
Confidence            4689999999999999999999      899999999998877754

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.57  E-value=1.3e-07  Score=72.71  Aligned_cols=38  Identities=37%  Similarity=0.361  Sum_probs=35.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      +||+|||+|++|+.+|+.|++      .|++|++||+....++.
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~------~g~~v~~~e~~~~~~~~   38 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVD------AGLKVAMVEIGAADSFL   38 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHH------CCCeEEEEeccCccCCC
Confidence            699999999999999999999      89999999999887743

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.56  E-value=1e-07  Score=77.54  Aligned_cols=40  Identities=35%  Similarity=0.601  Sum_probs=36.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+|+|||||++|+++|+.|++      .|++|+|+|+.+.+||..
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar------~G~~VtV~Ek~~~~GG~l  578 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLAR------AGHPVTVFEREENAGGVV  578 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH------cCCeEEEEecccccCcce
Confidence            4589999999999999999999      899999999998888764

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.53  E-value=1e-07  Score=73.71  Aligned_cols=37  Identities=38%  Similarity=0.492  Sum_probs=34.4

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +..++|+||||+|.+|+.+|..|++      .|.+|+|||+.+
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~------~g~~VllLEaG~   40 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSD------AGLSVLVLEAGG   40 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcC------CCCeEEEEeCCC
Confidence            4567999999999999999999998      899999999995

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.52  E-value=9.1e-07  Score=67.04  Aligned_cols=36  Identities=25%  Similarity=0.541  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      +|+|||||++|+.+|..|.+.    +.+.+|+|||+.+..
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~----~~~~~I~li~~~~~~   38 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRL----DKESDIIIFEKDRDM   38 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhh----CCCCCEEEEECCCCc
Confidence            699999999999999999872    246899999998653

>PLN02487 zeta-carotene desaturase

Probab=98.52  E-value=2.8e-07  Score=71.50  Aligned_cols=39  Identities=33%  Similarity=0.568  Sum_probs=35.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      .+|+|||||++|+++|+.|++      .|++|+|+|+.+..||..
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~------~g~~v~i~E~~~~~gG~~  114 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLD------QGHEVDIYESRPFIGGKV  114 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHh------CCCeeEEEecCCCCCCce
Confidence            489999999999999999999      899999999999888744

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.52  E-value=2.4e-07  Score=74.60  Aligned_cols=42  Identities=31%  Similarity=0.558  Sum_probs=37.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ...+|+|||||++|+++|..|++      .|++|+|+|+.+.++|...
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~------~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAK------RGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCCCeee
Confidence            34689999999999999999999      8999999999887776543

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.52  E-value=5.6e-06  Score=61.87  Aligned_cols=40  Identities=28%  Similarity=0.440  Sum_probs=32.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG   65 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g   65 (182)
                      ++|+|||+|++|+.+|.+|.+..  +..+. |.|+|+.+..|.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~--~~~~~-Isi~e~~~~~G~   41 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSP--RPSGL-ISIFEPRPNFGQ   41 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCC--CCCCc-eEEeccccccCC
Confidence            58999999999999999998843  22233 999999987764

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.51  E-value=2.1e-07  Score=71.13  Aligned_cols=41  Identities=41%  Similarity=0.656  Sum_probs=36.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ...+|+|||+|++|+++|..|++      .|.+|+|+|+.+..+|..
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~------~G~~V~vie~~~~~GG~l  182 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLAR------AGHKVTVFERADRIGGLL  182 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh------CCCcEEEEecCCCCCcee
Confidence            34689999999999999999999      899999999998877654

>PRK02106 choline dehydrogenase; Validated

Probab=98.51  E-value=1.6e-07  Score=73.17  Aligned_cols=37  Identities=32%  Similarity=0.445  Sum_probs=33.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .++|+||||+|.+|+.+|..|++.     +|.+|+|||+++.
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~-----~g~~VlvlEaG~~   40 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSED-----PDVSVLLLEAGGP   40 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhC-----CCCeEEEecCCCc
Confidence            458999999999999999999982     5899999999963

>PRK07846 mycothione reductase; Reviewed

Probab=98.50  E-value=3.7e-07  Score=69.34  Aligned_cols=49  Identities=24%  Similarity=0.382  Sum_probs=39.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHh
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN   79 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~   79 (182)
                      +||++|||||++|..+|..  .      .|.+|+|+|+. ..||...+-++++++.+.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~------~G~~V~lie~~-~~GGtC~n~GCiPsK~l~   49 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--F------ADKRIAIVEKG-TFGGTCLNVGCIPTKMFV   49 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--H------CCCeEEEEeCC-CCCCcccCcCcchhHHHH
Confidence            3799999999999987755  3      69999999986 467777777787766543

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.50  E-value=4.1e-07  Score=68.77  Aligned_cols=44  Identities=30%  Similarity=0.380  Sum_probs=36.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG   70 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~   70 (182)
                      ...|+||||||+|+.+|..|+..     .|.+|+|+||.+.++|....+
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~-----~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKH-----ERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHh-----cCCeEEEEecCCCCccEEEEe
Confidence            45799999999999999976531     689999999999999876543

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.49  E-value=2.4e-06  Score=63.59  Aligned_cols=36  Identities=17%  Similarity=0.355  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+|+|||||++|+++|..|.+.    .+..+|+||++++.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~----~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQ----DAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhh----CcCCCEEEEeCCCC
Confidence            4899999999999999999772    25679999998763

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.49  E-value=3.4e-06  Score=65.96  Aligned_cols=51  Identities=18%  Similarity=0.184  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe-------------CCEEEecCCC
Q psy2240         130 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT-------------GDVGIAKDGS  180 (182)
Q Consensus       130 ~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~-------------~~~vi~adG~  180 (182)
                      ...+...|.+.+++.|++++.++.++++..+++|+++|+..             ..+|++++|.
T Consensus       125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  188 (570)
T PRK05675        125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGA  188 (570)
T ss_pred             HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCc
Confidence            46789999999988899999999999998766777777542             3466677765

>TIGR03452 mycothione_red mycothione reductase

Probab=98.48  E-value=4.2e-07  Score=69.10  Aligned_cols=49  Identities=22%  Similarity=0.379  Sum_probs=39.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHh
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN   79 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~   79 (182)
                      .||++|||+|++|..+|.  +.      .|.+|+|+|+. ..||...+-++++++.+.
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~------~g~~V~lie~~-~~GGtC~n~GCiPsK~l~   50 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RF------ADKRIAIVEKG-TFGGTCLNVGCIPTKMFV   50 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HH------CCCeEEEEeCC-CCCCeeeccCccchHHHH
Confidence            589999999999988753  34      69999999986 468777778888777654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.48  E-value=2.2e-07  Score=69.56  Aligned_cols=34  Identities=38%  Similarity=0.621  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++||+|||+|++|+++|+.|++      .|.+|+|||+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~------~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAE------AGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHH------CCCcEEEEECCC
Confidence            5899999999999999999999      899999999874

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.47  E-value=3e-07  Score=70.03  Aligned_cols=40  Identities=38%  Similarity=0.659  Sum_probs=35.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+|+|||||++|+++|..|++      .|++|+|+|+.+..+|..
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~------~g~~V~lie~~~~~gG~l  179 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLAR------KGYDVTIFEARDKAGGLL  179 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHh------CCCeEEEEccCCCCCcEe
Confidence            4689999999999999999999      899999999998776543

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.46  E-value=4.7e-07  Score=69.07  Aligned_cols=41  Identities=32%  Similarity=0.619  Sum_probs=36.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ...+|+|||+|++|+++|..|++      .|.+|+++|+.+..+|..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~------~G~~V~i~e~~~~~gG~l  180 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILAR------AGVQVVVFDRHPEIGGLL  180 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCCCCcee
Confidence            34689999999999999999999      899999999998877654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG1276|consensus

Probab=98.45  E-value=3.5e-07  Score=67.02  Aligned_cols=44  Identities=39%  Similarity=0.604  Sum_probs=35.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS   69 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~   69 (182)
                      ..+|+|+|||++||++|+.|++    ++....|+++|+.++.||-..+
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r----~~p~~~i~l~Ea~~RvGGwirS   54 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLAR----LGPDVTITLFEASPRVGGWIRS   54 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHh----cCCCceEEEEecCCcccceeee
Confidence            4589999999999999999999    2233456779999998875543

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.45  E-value=2.9e-07  Score=65.35  Aligned_cols=35  Identities=31%  Similarity=0.563  Sum_probs=32.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +++||+|||||.+|+++|+.|++      +|.++.|+.+.-
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~------~Gk~c~iv~~gQ   35 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQ------AGKRCAIVNRGQ   35 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHh------cCCcEEEEeCCh
Confidence            36899999999999999999999      899999998773

>KOG0685|consensus

Probab=98.44  E-value=4.3e-07  Score=67.37  Aligned_cols=43  Identities=40%  Similarity=0.601  Sum_probs=36.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ....|+|||||++|+++|..|-+.     -..+++|+|.....||+..
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~-----gf~~~~IlEa~dRIGGRI~   62 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLEN-----GFIDVLILEASDRIGGRIH   62 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHh-----CCceEEEEEeccccCceEe
Confidence            345899999999999999999861     3569999999999998654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.43  E-value=3.8e-07  Score=72.21  Aligned_cols=41  Identities=34%  Similarity=0.566  Sum_probs=36.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ..+|+|||||++|+++|+.|++      .|++|+|+|+.+..+|...
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~------~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLR------KGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCceee
Confidence            3589999999999999999999      8999999999988776543

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.42  E-value=5.9e-07  Score=71.07  Aligned_cols=40  Identities=30%  Similarity=0.626  Sum_probs=36.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+|+|||+|++|+++|..|++      .|++|+|+|+.+..+|..
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~------~G~~Vtv~e~~~~~GG~l  349 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILAR------AGVQVDVFDRHPEIGGML  349 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHH------cCCcEEEEeCCCCCCCee
Confidence            4689999999999999999999      899999999999877654

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=98.40  E-value=2.6e-06  Score=62.81  Aligned_cols=51  Identities=14%  Similarity=0.055  Sum_probs=39.5

Q ss_pred             chHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE-------EEEeCCEEEecCCCC
Q psy2240         129 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK-------GIATGDVGIAKDGSP  181 (182)
Q Consensus       129 ~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~-------~v~~~~~vi~adG~~  181 (182)
                      ....+...|..++++.||+|+++++|++|.  +++..+       .+.++.+|||++|.+
T Consensus        84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGTLRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCcEEEEECCCceEEecCEEEEcCCCcc
Confidence            456899999999999999999999999993  222211       145678899999975

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>KOG3923|consensus

Probab=98.39  E-value=9.5e-07  Score=61.84  Aligned_cols=48  Identities=17%  Similarity=0.153  Sum_probs=33.0

Q ss_pred             ccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEeCCEEEecCC
Q psy2240         125 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG  179 (182)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~~~~vi~adG  179 (182)
                      .+......+..+|...+.+.|+.+.. .+|.++..-..      ..-|+||.|.|
T Consensus       145 t~~sE~~~ylpyl~k~l~e~Gvef~~-r~v~~l~E~~~------~~~DVivNCtG  192 (342)
T KOG3923|consen  145 TYLSEGPKYLPYLKKRLTENGVEFVQ-RRVESLEEVAR------PEYDVIVNCTG  192 (342)
T ss_pred             EeeccchhhhHHHHHHHHhcCcEEEE-eeeccHHHhcc------CCCcEEEECCc
Confidence            34667789999999999999998775 47777753221      22355666655

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.39  E-value=4.5e-06  Score=63.05  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=31.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +...+|||||||.+|+.+|..|.+      .+.+|+|||+.+.
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~------~~~~ItlI~~~~~   44 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDP------KKYNITVISPRNH   44 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCc------CCCeEEEEcCCCC
Confidence            344689999999999999999866      5789999998753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.39  E-value=9e-06  Score=60.51  Aligned_cols=91  Identities=26%  Similarity=0.276  Sum_probs=63.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      .+++|||||..|+-+|..|++      .|.+|+++|+.+.....                                    
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~------~g~~Vtlv~~~~~~l~~------------------------------------  179 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCR------AGKAVTLVDNAASLLAS------------------------------------  179 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHh------cCCeEEEEecCCcccch------------------------------------
Confidence            479999999999999999998      89999999986532100                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEec
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIAK  177 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~a  177 (182)
                       .       .                 ...+...+.+.+++.|++++++++++++..++++..+.     ....|.+|.|
T Consensus       180 -~-------~-----------------~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a  234 (377)
T PRK04965        180 -L-------M-----------------PPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAA  234 (377)
T ss_pred             -h-------C-----------------CHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEEC
Confidence             0       0                 01234556666777899999999999987643322221     2345777777


Q ss_pred             CCC
Q psy2240         178 DGS  180 (182)
Q Consensus       178 dG~  180 (182)
                      .|.
T Consensus       235 ~G~  237 (377)
T PRK04965        235 AGL  237 (377)
T ss_pred             cCC
Confidence            775

>PLN03000 amine oxidase

Probab=98.37  E-value=7.2e-07  Score=71.66  Aligned_cols=41  Identities=39%  Similarity=0.578  Sum_probs=37.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ..+|+|||||++|+++|..|.+      .|++|+|+|+....||...
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~------~G~~V~VlE~~~riGGRi~  224 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMR------FGFKVTVLEGRKRPGGRVY  224 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHH------CCCcEEEEEccCcCCCCcc
Confidence            4789999999999999999999      8999999999998888653

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.35  E-value=8.3e-07  Score=71.93  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...+|+|||+||+|+++|+.|++      .|++|+++|+.+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~------~Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLR------SGHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHh------CCCeEEEEcccc
Confidence            34689999999999999999999      899999999864

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.35  E-value=1.4e-05  Score=60.77  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||||.+|+.+|..|++      .|.+|+++|+.+.
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~------~g~~Vtli~~~~~  191 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNK------LGSKVTVLDAAST  191 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCc
Confidence            479999999999999999998      8999999998754

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.34  E-value=1.1e-06  Score=64.72  Aligned_cols=40  Identities=40%  Similarity=0.537  Sum_probs=35.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+|+|||+|++|+++|..|++      .|.+|+++|+.+.+++..
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~------~g~~v~lie~~~~~gg~~   57 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLAC------LGYEVHVYDKLPEPGGLM   57 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHH------CCCcEEEEeCCCCCCcee
Confidence            3589999999999999999999      899999999998877643

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.33  E-value=1.4e-06  Score=66.83  Aligned_cols=40  Identities=38%  Similarity=0.611  Sum_probs=35.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+|+|||+|++|+++|..|++      .|.+|+|+|+.+..+|..
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~------~g~~V~v~e~~~~~gG~l  182 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNR------AGHTVTVFEREDRCGGLL  182 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH------cCCeEEEEecCCCCCcee
Confidence            3589999999999999999999      899999999998776543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.33  E-value=1.3e-05  Score=61.27  Aligned_cols=33  Identities=30%  Similarity=0.440  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .+++|||||.+|+.+|..|++      .|.+|+++|+.+
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtli~~~~  203 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFAS------LGSKVTVIEMLD  203 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCcEEEEEcCC
Confidence            479999999999999999999      799999999875

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.32  E-value=1e-06  Score=68.87  Aligned_cols=40  Identities=35%  Similarity=0.680  Sum_probs=35.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+|+|||+|++|+++|+.|++      .|.+|+++|+.+..+|..
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~------~G~~V~v~e~~~~~GG~l  176 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRR------MGHAVTIFEAGPKLGGMM  176 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCCee
Confidence            4589999999999999999999      899999999998877654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.32  E-value=1.7e-05  Score=59.50  Aligned_cols=34  Identities=41%  Similarity=0.560  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||+|..|+-+|..|++      .|.+|+++|+.+.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~------~g~~Vtlv~~~~~  178 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQ------RRCKVTVIELAAT  178 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCc
Confidence            469999999999999999998      8999999998754

>TIGR01810 betA choline dehydrogenase

Probab=98.31  E-value=6.7e-07  Score=69.37  Aligned_cols=33  Identities=36%  Similarity=0.551  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~   62 (182)
                      |+||||+|.+|+.+|..|++      .+ .+|+|||+++.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~------~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSE------DVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhcc------CCCCeEEEEecCCC
Confidence            89999999999999999999      67 79999999963

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.31  E-value=1.9e-05  Score=60.36  Aligned_cols=34  Identities=35%  Similarity=0.469  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||||++|+.+|..|++      .|.+|+++|+.+.
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~------~g~~Vtli~~~~~  204 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSR------LGTKVTIVEMAPQ  204 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCC
Confidence            479999999999999999998      7999999998753

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.30  E-value=1.5e-05  Score=60.99  Aligned_cols=90  Identities=19%  Similarity=0.212  Sum_probs=62.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+.....                                    
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~------~g~~Vtli~~~~~~l~~------------------------------------  213 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAA------LGVKVTLINTRDRLLSF------------------------------------  213 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCCcCCc------------------------------------
Confidence            479999999999999999999      89999999987532100                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEec
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIAK  177 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~a  177 (182)
                               +                + ..+...|.+.+++.|++++.+++|++++.++++..+.     ....+.+|.|
T Consensus       214 ---------~----------------d-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a  267 (461)
T PRK05249        214 ---------L----------------D-DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYA  267 (461)
T ss_pred             ---------C----------------C-HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEe
Confidence                     0                0 1244556666777899999999999997644332221     1234666666


Q ss_pred             CCC
Q psy2240         178 DGS  180 (182)
Q Consensus       178 dG~  180 (182)
                      .|.
T Consensus       268 ~G~  270 (461)
T PRK05249        268 NGR  270 (461)
T ss_pred             ecC
Confidence            654

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.29  E-value=2.4e-05  Score=59.88  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||||..|+-.|..|++      .|.+|+++|+.+.
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~------~G~~Vtlie~~~~  208 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRR------LGAQVTVVEYLDR  208 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEeCCCC
Confidence            479999999999999999998      8999999998653

>PLN02976 amine oxidase

Probab=98.27  E-value=1.5e-06  Score=72.81  Aligned_cols=40  Identities=33%  Similarity=0.733  Sum_probs=36.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+|+|||||++|+++|+.|++      .|++|+|||+.+.+||..
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~------~G~~V~VlEa~~~vGGri  732 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQR------QGFSVTVLEARSRIGGRV  732 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHH------CCCcEEEEeeccCCCCce
Confidence            4689999999999999999999      899999999998888764

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.26  E-value=2e-06  Score=64.99  Aligned_cols=40  Identities=40%  Similarity=0.625  Sum_probs=37.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ..|+|||+||+|+++|..|++      .|++|+++|+.+..+|...
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~------~G~~Vtv~e~~~~~GGll~  163 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSR------AGHDVTVFERVALDGGLLL  163 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHh------CCCeEEEeCCcCCCceeEE
Confidence            579999999999999999999      8999999999999887654

>PRK06370 mercuric reductase; Validated

Probab=98.25  E-value=3e-05  Score=59.30  Aligned_cols=34  Identities=26%  Similarity=0.501  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||+|..|+-+|..|++      .|.+|+++|+.+.
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~------~G~~Vtli~~~~~  205 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRR------FGSEVTVIERGPR  205 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCC
Confidence            479999999999999999999      8999999998754

>TIGR02053 MerA mercuric reductase

Probab=98.24  E-value=2.8e-05  Score=59.47  Aligned_cols=34  Identities=18%  Similarity=0.464  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||+|.+|+-+|..|++      .|.+|+++|+.+.
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~------~g~~Vtli~~~~~  200 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFAR------LGSEVTILQRSDR  200 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCcEEEEEcCCc
Confidence            579999999999999999999      8999999998753

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.24  E-value=6.9e-06  Score=66.56  Aligned_cols=37  Identities=19%  Similarity=0.344  Sum_probs=30.0

Q ss_pred             EEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      |+|||+|++|+++|..|.+..   ..+.+|+|||+.+...
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~---~~~~~Itvi~~e~~~~   37 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLN---RHMFEITIFGEEPHPN   37 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcC---CCCCeEEEEeCCCCCC
Confidence            689999999999999987731   1357999999987653

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.24  E-value=3.1e-05  Score=59.21  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||||.+|+-+|..|++      .|.+|+++|+.+.
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~------~g~~Vtli~~~~~  206 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYAS------LGAEVTIVEALPR  206 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCC
Confidence            479999999999999999998      8999999998754

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.24  E-value=3.1e-05  Score=59.39  Aligned_cols=34  Identities=38%  Similarity=0.509  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||||++|+.+|..|++      .|.+|+++|+.+.
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~------~g~~Vtli~~~~~  214 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLAD------FGVEVTVVEAADR  214 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHH------cCCeEEEEEecCc
Confidence            479999999999999999999      7999999998754

>PLN02785 Protein HOTHEAD

Probab=98.23  E-value=2.4e-06  Score=66.82  Aligned_cols=36  Identities=36%  Similarity=0.609  Sum_probs=32.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...||+||||||.+|+.+|..|++       +.+|+|||+++.
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-------~~~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-------NFSVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-------CCcEEEEecCCC
Confidence            346999999999999999999997       379999999974

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.21  E-value=2.2e-06  Score=63.91  Aligned_cols=33  Identities=36%  Similarity=0.690  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|++|||+|++|+++|+.|++      .|++|+|+|+..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~------~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAE------AGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHH------CCCCEEEEeCCC
Confidence            589999999999999999999      899999999875

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK13984 putative oxidoreductase; Provisional

Probab=98.20  E-value=3.4e-06  Score=66.52  Aligned_cols=41  Identities=37%  Similarity=0.547  Sum_probs=36.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ...+|+|||+|++|+++|..|++      .|++|+|||+.+.++|..
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~------~G~~v~vie~~~~~gG~~  322 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLAT------MGYEVTVYESLSKPGGVM  322 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCceE
Confidence            34689999999999999999999      899999999998777643

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.20  E-value=1.2e-05  Score=59.58  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|||||++|+.+|..|.+..   .++.+|+|||+.+.
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~---~~~~~I~li~~~~~   36 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKP---LPGVRVTLINPSST   36 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcC---CCCCEEEEECCCCC
Confidence            4899999999999999986411   14689999998754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK06116 glutathione reductase; Validated

Probab=98.19  E-value=5.5e-05  Score=57.70  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++++.+.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~  201 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNG------LGSETHLFVRGDA  201 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCC
Confidence            479999999999999999998      7999999998653

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.19  E-value=1.5e-05  Score=64.86  Aligned_cols=40  Identities=15%  Similarity=0.293  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      .+|+|||+|++|+++|..|.+...  ..+.+|+||++.+...
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~--~~~~~Itvi~~e~~~~   43 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKAD--AANFDITVFCEEPRIA   43 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCC--CCCCeEEEEECCCCCc
Confidence            379999999999999999976210  1357999999987653

>KOG4254|consensus

Probab=98.19  E-value=1.7e-06  Score=63.92  Aligned_cols=42  Identities=31%  Similarity=0.535  Sum_probs=37.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      .+++|++|||+|..||.+|..|++      .|.+|+++||+...+|.+
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r------~g~~V~vlerrhv~gGaa   53 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLAR------YGQSVAVLERRHVIGGAA   53 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHh------cCcceEEEEEeeecCcce
Confidence            568999999999999999999999      899999999997666654

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.18  E-value=5.4e-05  Score=57.40  Aligned_cols=73  Identities=30%  Similarity=0.325  Sum_probs=58.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||+.|+-.|-.+++      .|.+|+|||+.+..-..                                    
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~------LG~~VTiie~~~~iLp~------------------------------------  211 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAA------LGSKVTVVERGDRILPG------------------------------------  211 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCCCCCc------------------------------------
Confidence            469999999999999999999      89999999998753200                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG  163 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g  163 (182)
                               .                + .++.+.+.+.+++.|++++.+++++.++.++++
T Consensus       212 ---------~----------------D-~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~  246 (454)
T COG1249         212 ---------E----------------D-PEISKELTKQLEKGGVKILLNTKVTAVEKKDDG  246 (454)
T ss_pred             ---------C----------------C-HHHHHHHHHHHHhCCeEEEccceEEEEEecCCe
Confidence                     0                0 146667777777778999999999999875544

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.18  E-value=5.9e-05  Score=57.53  Aligned_cols=34  Identities=29%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~------~g~~Vtli~~~~~  200 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHG------LGSETHLVIRHER  200 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCC
Confidence            479999999999999999999      8999999998754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.17  E-value=5.7e-05  Score=57.85  Aligned_cols=33  Identities=36%  Similarity=0.480  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .+++|||||..|+-+|..|++      .|.+|+++|+.+
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~------~G~~Vtlv~~~~  205 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKN------YGVDVTIVEFLD  205 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHH------cCCeEEEEecCC
Confidence            479999999999999999999      799999999764

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=5.5e-06  Score=59.59  Aligned_cols=85  Identities=32%  Similarity=0.491  Sum_probs=56.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      ..|||+||||||+|.++|+..+|      +|+++=++-.  ..||...     +...+                      
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaAR------KGiRTGl~ae--rfGGQvl-----dT~~I----------------------  254 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAAR------KGIRTGLVAE--RFGGQVL-----DTMGI----------------------  254 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHh------hcchhhhhhh--hhCCeec-----cccch----------------------
Confidence            35899999999999999999999      8888765521  2333211     00000                      


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY  159 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~  159 (182)
                       ..+     ..++.             ....+|...|.++++++.+++....+++.++.
T Consensus       255 -ENf-----Isv~~-------------teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~  294 (520)
T COG3634         255 -ENF-----ISVPE-------------TEGPKLAAALEAHVKQYDVDVMNLQRASKLEP  294 (520)
T ss_pred             -hhe-----ecccc-------------ccchHHHHHHHHHHhhcCchhhhhhhhhccee
Confidence             000     00111             11237888899999999999998888888876

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.17  E-value=3.5e-05  Score=59.74  Aligned_cols=54  Identities=22%  Similarity=0.201  Sum_probs=42.5

Q ss_pred             cccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------------EEeCCEEEecCCC
Q psy2240         126 YVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------------IATGDVGIAKDGS  180 (182)
Q Consensus       126 ~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------------v~~~~~vi~adG~  180 (182)
                      ..+++..+...|.+.+++.|++|+++++|++++.++ +.+.+            .+.++.||.|.|.
T Consensus       123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~  188 (516)
T TIGR03377       123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREG-GRVTGVKVEDHKTGEEERIEAQVVINAAGI  188 (516)
T ss_pred             cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCEEEECCCc
Confidence            578999999999999999999999999999998743 43332            2345777777775

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.14  E-value=4e-05  Score=55.97  Aligned_cols=57  Identities=21%  Similarity=0.235  Sum_probs=43.9

Q ss_pred             CCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE------EeCCEEEecCCC
Q psy2240         123 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI------ATGDVGIAKDGS  180 (182)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------~~~~~vi~adG~  180 (182)
                      +....+++..+...|.+.+++.|++++.+++|+++..+ ++.+.+|      +..+.||.|.|+
T Consensus       129 ~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g~~~a~~vV~a~G~  191 (337)
T TIGR02352       129 PDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSGDVQADQVVLAAGA  191 (337)
T ss_pred             CCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCCEEECCEEEEcCCh
Confidence            34568899999999999999999999999999999874 3444433      334666666664

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.12  E-value=8.6e-05  Score=56.50  Aligned_cols=33  Identities=30%  Similarity=0.399  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|||+|..|+-.|..|++      .|.+|+++|+.+
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~------~g~~Vtli~~~~  191 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFAN------FGSKVTILEAAS  191 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------CCCeEEEEecCC
Confidence            379999999999999999999      899999999864

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.12  E-value=6.7e-05  Score=61.29  Aligned_cols=33  Identities=33%  Similarity=0.431  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|||||..|+-+|..|++      .|.+|+|+|+.+
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~------~G~~VtvVe~~~  178 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKN------LGVETHVIEFAP  178 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEeccc
Confidence            369999999999999999999      899999999865

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.08  E-value=7e-05  Score=56.17  Aligned_cols=72  Identities=39%  Similarity=0.565  Sum_probs=58.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      .+++|||+|+.|+.+|..|++      +|++|+++|+.+..++...                                  
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~------~G~~v~l~e~~~~~~~~~~----------------------------------  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAK------RGKKVTLIEAADRLGGQLL----------------------------------  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHH------cCCeEEEEEcccccchhhh----------------------------------
Confidence            589999999999999999999      8999999999987653210                                  


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG  161 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~  161 (182)
                                            .     ..+...+.+..++.|++++.++.+.+++...
T Consensus       177 ----------------------~-----~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~  208 (415)
T COG0446         177 ----------------------D-----PEVAEELAELLEKYGVELLLGTKVVGVEGKG  208 (415)
T ss_pred             ----------------------h-----HHHHHHHHHHHHHCCcEEEeCCceEEEEccc
Confidence                                  0     1356667777788899999999999997643

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.07  E-value=9.1e-05  Score=56.77  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++|+.+.
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~------~g~~Vtli~~~~~  211 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTE------LGVKVTLVSSRDR  211 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCc
Confidence            479999999999999999998      7999999998654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.07  E-value=0.00012  Score=55.86  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||+|..|+-+|..|++      .|.+|+++|+.+.
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~------~G~~Vtli~~~~~  200 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRG------LGVQVTLIYRGEL  200 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHH------cCCeEEEEEeCCC
Confidence            469999999999999999998      7999999997643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02507 glutathione reductase

Probab=98.06  E-value=0.00013  Score=56.34  Aligned_cols=33  Identities=21%  Similarity=0.224  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .+++|||||..|+-+|..|++      .|.+|+|+++.+
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~------~G~~Vtli~~~~  236 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRG------MGATVDLFFRKE  236 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHH------cCCeEEEEEecC
Confidence            479999999999999999998      799999999765

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.06  E-value=0.00014  Score=55.94  Aligned_cols=34  Identities=15%  Similarity=0.341  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||+|..|+.+|..|++      .|.+|+++|+.+.
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~------~g~~Vtli~~~~~  217 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRR------LGAEVTILEALPA  217 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEeCCCc
Confidence            479999999999999999998      7999999998653

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.05  E-value=0.00011  Score=55.91  Aligned_cols=89  Identities=20%  Similarity=0.274  Sum_probs=61.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||++|+-+|..|.+      .|.+|+++++.+....                                     
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~------~g~~Vtli~~~~~~l~-------------------------------------  186 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKH------LGKNVRIIQLEDRILP-------------------------------------  186 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHh------cCCcEEEEeCCcccCc-------------------------------------
Confidence            479999999999999999988      7899999987643210                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------EEeCCEEEe
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------IATGDVGIA  176 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------v~~~~~vi~  176 (182)
                         .    .+                + ..+.+.+.+.+++.|++++.+++++++..  ++.+..      ....+.+|.
T Consensus       187 ---~----~~----------------~-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~~i~~d~vi~  240 (444)
T PRK09564        187 ---D----SF----------------D-KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKGEYEADVVIV  240 (444)
T ss_pred             ---h----hc----------------C-HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCCEEEcCEEEE
Confidence               0    00                0 13555667777888999999999999854  232222      234466666


Q ss_pred             cCCC
Q psy2240         177 KDGS  180 (182)
Q Consensus       177 adG~  180 (182)
                      |.|.
T Consensus       241 a~G~  244 (444)
T PRK09564        241 ATGV  244 (444)
T ss_pred             CcCC
Confidence            6664

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.04  E-value=0.00011  Score=55.66  Aligned_cols=34  Identities=32%  Similarity=0.619  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+|+|||||.+|+.+|..|++      .|.+|+++++.+.
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtli~~~~~  171 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRE------RGKNVTLIHRSER  171 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHh------CCCcEEEEECCcc
Confidence            479999999999999999998      7899999998653

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK14694 putative mercuric reductase; Provisional

Probab=98.04  E-value=0.00013  Score=55.92  Aligned_cols=32  Identities=9%  Similarity=0.297  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++++.
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~------~g~~Vtlv~~~  210 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFAR------LGSRVTVLARS  210 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEECC
Confidence            479999999999999999999      89999999863

>KOG1800|consensus

Probab=98.04  E-value=7.6e-06  Score=59.41  Aligned_cols=42  Identities=33%  Similarity=0.392  Sum_probs=35.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ..|+|||+||+|..+|..|.+    +..+++|.|+|+.|.+.|...
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk----~~~~~~Vdi~Ek~PvPFGLvR   62 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLK----RHPNAHVDIFEKLPVPFGLVR   62 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHh----cCCCCeeEeeecCCcccceee
Confidence            379999999999999999987    125789999999998877554

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.03  E-value=8.6e-06  Score=61.02  Aligned_cols=37  Identities=32%  Similarity=0.443  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..+|+|||||++|+++|..|.+.    +...+|+|+++.+.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~----~~~~~I~li~~e~~   39 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQ----GFTGELHLFSDERH   39 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhh----CCCCCEEEeCCCCC
Confidence            35799999999999999999982    12348999998854

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.03  E-value=0.0001  Score=54.82  Aligned_cols=75  Identities=35%  Similarity=0.498  Sum_probs=53.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCC-------CceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCcc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGK-------ELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTP   95 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-------g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (182)
                      .+|+|||||++|.-+|-+|+.+...-..       .++|+|+|+.+....                              
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp------------------------------  205 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP------------------------------  205 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc------------------------------
Confidence            4699999999999999999875431100       247888887764320                              


Q ss_pred             chhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE
Q psy2240          96 VHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY  159 (182)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~  159 (182)
                                        .+              ..++..+..+.+++.||+|+.++.|++++.
T Consensus       206 ------------------~~--------------~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~  237 (405)
T COG1252         206 ------------------MF--------------PPKLSKYAERALEKLGVEVLLGTPVTEVTP  237 (405)
T ss_pred             ------------------CC--------------CHHHHHHHHHHHHHCCCEEEcCCceEEECC
Confidence                              00              024666777778889999999999999964

>PRK14727 putative mercuric reductase; Provisional

Probab=98.03  E-value=0.00014  Score=55.95  Aligned_cols=32  Identities=13%  Similarity=0.268  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++++.
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~------~G~~Vtlv~~~  220 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYAR------LGSRVTILARS  220 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCEEEEEEcC
Confidence            479999999999999999998      79999999864

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.03  E-value=4.3e-05  Score=54.69  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=64.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccc---------cChhHHhhhhhhHHhcCCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV---------IDPIALNELLPDWKDLGAPLN   93 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~   93 (182)
                      ..|-|||||.+|+-+|+++++      +|++|.++|-.+..+...+....         +....+....+.+        
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~------~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlL--------   69 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAK------RGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLL--------   69 (439)
T ss_pred             CceEEEcccccccHHHHHHHH------cCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHH--------
Confidence            469999999999999999999      99999999988754422211111         1111111111111        


Q ss_pred             ccchhhhHHH-----HHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC-cEEecCCccceeE
Q psy2240          94 TPVHEDKFAY-----LTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG-VEIYPGIPASEVL  158 (182)
Q Consensus        94 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-v~i~~~~~v~~i~  158 (182)
                          +..++.     +.......+        ...+...++|..+.+.+.+.++.+. ++|+. .+|+.|-
T Consensus        70 ----k~EMR~lgSlii~~Ad~~~V--------PAGgALAVDR~~Fs~~vT~~l~~hpli~vir-eEvt~iP  127 (439)
T COG1206          70 ----KAEMRLLGSLIIEAADKHRV--------PAGGALAVDRDGFSQAVTEKLENHPLIEVIR-EEVTEIP  127 (439)
T ss_pred             ----HHHHHHhhhHHhhhhhhccC--------CCCceeeecHhHHHHHHHHHHhcCCCEEEEc-cccccCC
Confidence                111111     111111111        2223568899999999999998754 77665 4788873

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.01  E-value=5.4e-05  Score=56.45  Aligned_cols=57  Identities=12%  Similarity=0.116  Sum_probs=41.2

Q ss_pred             CCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE----E-EEeCCEEEecCCC
Q psy2240         123 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK----G-IATGDVGIAKDGS  180 (182)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~----~-v~~~~~vi~adG~  180 (182)
                      +....+++..+...|.+.+++ |++++++++|++++.+++++.+    + ...++.||.|.|.
T Consensus       127 ~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~  188 (381)
T TIGR03197       127 PQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGA  188 (381)
T ss_pred             CCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCc
Confidence            445678999999999999998 9999999999999874443222    1 1334555555554

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>KOG0399|consensus

Probab=98.00  E-value=1.2e-05  Score=65.88  Aligned_cols=42  Identities=38%  Similarity=0.629  Sum_probs=37.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      .-..|.|||+||+||++|-+|-+      .|+.|+|+||...+||-..
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk------~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNK------AGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhh------cCcEEEEEEecCCcCceee
Confidence            34589999999999999999999      8999999999999887543

>PRK13748 putative mercuric reductase; Provisional

Probab=98.00  E-value=0.00014  Score=57.09  Aligned_cols=32  Identities=13%  Similarity=0.294  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++++.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~------~g~~Vtli~~~  302 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFAR------LGSKVTILARS  302 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCEEEEEecC
Confidence            479999999999999999999      89999999974

>KOG0404|consensus

Probab=98.00  E-value=0.00019  Score=48.77  Aligned_cols=90  Identities=31%  Similarity=0.427  Sum_probs=58.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      ...|+|||+||++-++|+.+++      +.++-+++|-.- .++.. .++.+.                   +       
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaar------aelkPllfEG~~-~~~i~-pGGQLt-------------------T-------   53 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAAR------AELKPLLFEGMM-ANGIA-PGGQLT-------------------T-------   53 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhh------cccCceEEeeee-ccCcC-CCceee-------------------e-------
Confidence            4579999999999999999999      889999999653 22111 111110                   0       


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY  159 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~  159 (182)
                             ..+++.++.+|.      -+....|.+.|++...+.|.+|+.. .|.++..
T Consensus        54 -------TT~veNfPGFPd------gi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~   97 (322)
T KOG0404|consen   54 -------TTDVENFPGFPD------GITGPELMDKMRKQSERFGTEIITE-TVSKVDL   97 (322)
T ss_pred             -------eeccccCCCCCc------ccccHHHHHHHHHHHHhhcceeeee-ehhhccc
Confidence                   001111222221      2334578999999999999998865 5666654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.00  E-value=0.00016  Score=55.50  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||||..|+-+|..|++      .|.+|+|+|+.+.
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~------~G~~Vtlv~~~~~  208 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHR------LGSEVDVVEMFDQ  208 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCCEEEEecCCC
Confidence            479999999999999999999      8999999998754

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.99  E-value=0.00022  Score=54.93  Aligned_cols=37  Identities=24%  Similarity=0.210  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||||..|+-+|..++.+.   ..|.+|+|+|+.+.
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~---~~G~~Vtli~~~~~  224 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYK---PRGGKVTLCYRNNM  224 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhc---cCCCeEEEEecCCc
Confidence            47999999999999997765521   03889999998754

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02546 glutathione reductase

Probab=97.99  E-value=0.00021  Score=55.84  Aligned_cols=34  Identities=21%  Similarity=0.270  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||||..|+-+|..|++      .|.+|+++|+.+.
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~------~g~~Vtlv~~~~~  286 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNG------LKSDVHVFIRQKK  286 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHh------cCCeEEEEEeccc
Confidence            479999999999999999998      7899999998653

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.98  E-value=0.00022  Score=54.61  Aligned_cols=34  Identities=24%  Similarity=0.501  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||+|..|+-+|..|++      .|.+|+++|+.+.
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~------~g~~Vtli~~~~~  203 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSR------LGVKVTVFERGDR  203 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCC
Confidence            479999999999999999999      8999999998754

>PTZ00058 glutathione reductase; Provisional

Probab=97.98  E-value=0.00025  Score=55.49  Aligned_cols=34  Identities=9%  Similarity=0.140  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||||..|+-.|..|++      .|.+|+++|+.+.
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~------~G~~Vtli~~~~~  271 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNR------LGAESYIFARGNR  271 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHH------cCCcEEEEEeccc
Confidence            479999999999999999998      7999999998653

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.95  E-value=0.00019  Score=58.50  Aligned_cols=33  Identities=27%  Similarity=0.584  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|||||..|+-+|..|++      .|.+|+|+|+.+
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~------~G~~Vtvv~~~~  173 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQN------LGMDVSVIHHAP  173 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHh------cCCeEEEEccCC
Confidence            469999999999999999999      899999999764

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.89  E-value=0.00029  Score=54.27  Aligned_cols=32  Identities=19%  Similarity=0.259  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      -.++|||||..|+-+|..|++      .|.+|+++++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~------~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAG------IGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHH------hCCcEEEEEec
Confidence            369999999999999999999      79999999863

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK07846 mycothione reductase; Reviewed

Probab=97.86  E-value=0.00042  Score=52.97  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||||..|+-+|..|++      .|.+|+++|+.+.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~------~G~~Vtli~~~~~  200 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSA------LGVRVTVVNRSGR  200 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCc
Confidence            479999999999999999999      8999999998653

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.86  E-value=0.00044  Score=53.53  Aligned_cols=32  Identities=22%  Similarity=0.327  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      .+++|||||..|+-+|..|++      .|.+|+++++.
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~------~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNE------LGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCcEEEEEcC
Confidence            379999999999999999999      89999999863

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.84  E-value=3.8e-05  Score=57.77  Aligned_cols=43  Identities=26%  Similarity=0.381  Sum_probs=32.7

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      |+.++||+|+|.|..-+.+|..|++      .|.+|+.+|+++.-||..
T Consensus         1 m~~~yDviI~GTGl~esila~als~------~GkkVLhiD~n~yYGg~~   43 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSR------SGKKVLHIDRNDYYGGEW   43 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHH------TT--EEEE-SSSSSCGGG
T ss_pred             CCccceEEEECCCcHHHHHHHHHHh------cCCEEEecCCCCCcCCch
Confidence            4678999999999999999999999      899999999998777643

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.81  E-value=0.0004  Score=52.86  Aligned_cols=34  Identities=18%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||||..|+-+|..|++      .|.+|+++|+.+.
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~------~g~~Vtli~~~~~  182 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYE------RGLHPTLIHRSDK  182 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCcEEEEecccc
Confidence            479999999999999999998      8999999998754

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.79  E-value=0.00065  Score=54.12  Aligned_cols=34  Identities=21%  Similarity=0.112  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||||..|+-.|..|++      .|.+|+++|+.+.
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~------~G~eVTLIe~~~~  346 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTA------LGSEVVSFEYSPQ  346 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHh------CCCeEEEEeccCc
Confidence            379999999999999999998      7999999998754

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=97.78  E-value=0.00037  Score=54.72  Aligned_cols=50  Identities=20%  Similarity=0.242  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe-------------CCEEEecCCC
Q psy2240         130 LGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT-------------GDVGIAKDGS  180 (182)
Q Consensus       130 ~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~-------------~~~vi~adG~  180 (182)
                      ...+...|.+.+++.|++|++++.++++.. ++|+++|+..             ..+|++++|.
T Consensus       118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~-~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~  180 (565)
T TIGR01816       118 GHAILHTLYQQNLKADTSFFNEYFALDLLM-EDGECRGVIAYCLETGEIHRFRAKAVVLATGGY  180 (565)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeccEEEEEEe-eCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCc
Confidence            356889999999889999999999999987 4677776432             3456666664

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.74  E-value=0.00048  Score=52.61  Aligned_cols=33  Identities=21%  Similarity=0.335  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|||||..|+-+|..|.+      .|.+|+++++..
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~------~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALR------LGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCEEEEEeecC
Confidence            479999999999999999999      899999998764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.69  E-value=0.0012  Score=50.49  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||||..|+.+|..|++      .|.+|++||+.+.
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~------~G~~Vtli~~~~~  203 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSA------LGTRVTIVNRSTK  203 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHh------CCCcEEEEEccCc
Confidence            479999999999999999998      8999999998643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.63  E-value=0.0011  Score=50.21  Aligned_cols=39  Identities=38%  Similarity=0.635  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcC--------CCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDG--------KELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~--------~g~~v~vlE~~~~   62 (182)
                      .++|||||++|+-+|..|+.+...+.        .+.+|+++|+.+.
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~  221 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE  221 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence            79999999999999999986432110        2578999987653

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=97.59  E-value=0.00041  Score=50.84  Aligned_cols=43  Identities=30%  Similarity=0.488  Sum_probs=35.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+-|||+|++||++|..|-|  +....|.++.+||.-+..||..
T Consensus        23 KsaY~vG~GlAsLA~AvfLIR--Dg~m~G~~IHilEelpl~GGSl   65 (587)
T COG4716          23 KSAYIVGGGLASLAAAVFLIR--DGQMDGKRIHILEELPLAGGSL   65 (587)
T ss_pred             ceeEEEccchHhhhheeEEEe--ccccCCceeEeeecCcccCCCC
Confidence            468899999999999999987  3333578999999988777643

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.56  E-value=0.00014  Score=48.41  Aligned_cols=33  Identities=24%  Similarity=0.472  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||+|..|...|..++.      .|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~------~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFAR------AGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHH------TTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHh------CCCcEEEEECChH
Confidence            38999999999999999999      8999999998753

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.56  E-value=0.00017  Score=46.90  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||||..|.++|..|++      +|.+|+++.+.+
T Consensus         1 KI~ViGaG~~G~AlA~~la~------~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLAD------NGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHH------CTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHH------cCCEEEEEeccH
Confidence            48999999999999999999      899999999875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.55  E-value=0.0048  Score=45.44  Aligned_cols=38  Identities=26%  Similarity=0.415  Sum_probs=28.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ....|+|||||.++.-++..|.+.    ++..+|+++-|++.
T Consensus       189 ~~~~V~VVGgGQSAAEi~~~L~~~----~~~~~V~~i~R~~~  226 (341)
T PF13434_consen  189 AGKRVAVVGGGQSAAEIFLDLLRR----GPEAKVTWISRSPG  226 (341)
T ss_dssp             --EEEEEE-SSHHHHHHHHHHHHH-----TTEEEEEEESSSS
T ss_pred             CCCeEEEECCcHhHHHHHHHHHhC----CCCcEEEEEECCCc
Confidence            345799999999999999999882    23358999988764

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=97.48  E-value=0.00017  Score=54.24  Aligned_cols=31  Identities=39%  Similarity=0.519  Sum_probs=28.1

Q ss_pred             hHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          32 PAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        32 ~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ++||++|+.|++      .|.+|+|||++..+||...
T Consensus         1 iaGL~aA~~L~~------~G~~v~vlEa~~r~GGr~~   31 (450)
T PF01593_consen    1 IAGLAAAYYLAK------AGYDVTVLEASDRVGGRIR   31 (450)
T ss_dssp             HHHHHHHHHHHH------TTTEEEEEESSSSSBTTS-
T ss_pred             ChHHHHHHHHHh------CCCCEEEEEcCCCCCcceE
Confidence            689999999999      8999999999999998754

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>KOG1335|consensus

Probab=97.46  E-value=0.0011  Score=48.67  Aligned_cols=75  Identities=21%  Similarity=0.391  Sum_probs=58.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||+|..||-.+.--.+      .|-+|+++|-.+..++..                                   
T Consensus       212 k~~~viG~G~IGLE~gsV~~r------LGseVT~VEf~~~i~~~m-----------------------------------  250 (506)
T KOG1335|consen  212 KKLTVIGAGYIGLEMGSVWSR------LGSEVTVVEFLDQIGGVM-----------------------------------  250 (506)
T ss_pred             ceEEEEcCceeeeehhhHHHh------cCCeEEEEEehhhhcccc-----------------------------------
Confidence            469999999999999988888      799999999776554210                                   


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV  165 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~  165 (182)
                                                + .++...+.+.++++|+.+..+++|...+.+.+|.+
T Consensus       251 --------------------------D-~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v  286 (506)
T KOG1335|consen  251 --------------------------D-GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV  286 (506)
T ss_pred             --------------------------C-HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce
Confidence                                      0 14555666666778999999999999998887643

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.44  E-value=0.00038  Score=53.64  Aligned_cols=32  Identities=34%  Similarity=0.444  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|||+|.+|+++|..|++      .|.+|+++|+.+
T Consensus        18 ~v~viG~G~~G~~~A~~L~~------~G~~V~~~d~~~   49 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLE------LGARVTVVDDGD   49 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCc
Confidence            69999999999999999998      899999999764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.43  E-value=0.0029  Score=45.41  Aligned_cols=33  Identities=33%  Similarity=0.566  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .+|+|||+|.+|+-+|..|++      .+.+|+++++.+
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~------~~~~V~~v~~~~  174 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTR------IAKKVTLVHRRD  174 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHh------hcCEEEEEEeCc
Confidence            479999999999999999998      788999999853

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.41  E-value=0.00029  Score=52.49  Aligned_cols=37  Identities=32%  Similarity=0.568  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...|||||||.+|+.+|..|.+..    .+.+|+++|+.+.
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~----~~~~itLVd~~~~   39 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKL----PDVEITLVDRRDY   39 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcC----CCCcEEEEeCCCc
Confidence            346999999999999999999821    1488999999974

>KOG1336|consensus

Probab=97.36  E-value=0.0042  Score=46.83  Aligned_cols=92  Identities=26%  Similarity=0.302  Sum_probs=67.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      .-.|+++|+|..|+-.|..|..      .+.+|+++++.+.+-.                     .              
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~------~~~~VT~V~~e~~~~~---------------------~--------------  251 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVS------KAKSVTVVFPEPWLLP---------------------R--------------  251 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHh------cCceEEEEccCccchh---------------------h--------------
Confidence            3469999999999999999988      7899999998764320                     0              


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEE-------eCCEE
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIA-------TGDVG  174 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~-------~~~~v  174 (182)
                       .+                    +     ..+.+.+.+..++.|++++.++.+.+++.+++|.+.-|.       .+|+|
T Consensus       252 -lf--------------------~-----~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlv  305 (478)
T KOG1336|consen  252 -LF--------------------G-----PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLV  305 (478)
T ss_pred             -hh--------------------h-----HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeE
Confidence             00                    0     134555666677889999999999999988888766443       34666


Q ss_pred             EecCCC
Q psy2240         175 IAKDGS  180 (182)
Q Consensus       175 i~adG~  180 (182)
                      |...|+
T Consensus       306 v~GiG~  311 (478)
T KOG1336|consen  306 VVGIGI  311 (478)
T ss_pred             EEeecc
Confidence            665554

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.32  E-value=0.0006  Score=43.97  Aligned_cols=31  Identities=35%  Similarity=0.556  Sum_probs=29.4

Q ss_pred             EEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      |+|+|+|..|+..|..|++      .|.+|.++.|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~------~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQ------AGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHH------TTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHH------CCCceEEEEccc
Confidence            7899999999999999999      899999999886

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.30  E-value=0.00056  Score=49.70  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||+|..|...|..++.      .|++|+++|..+.
T Consensus         9 ~VaVIGaG~MG~giA~~~a~------aG~~V~l~D~~~~   41 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALA------HGLDVVAWDPAPG   41 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHh------CCCeEEEEeCCHH
Confidence            59999999999999999999      8999999998763

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.28  E-value=0.0061  Score=49.73  Aligned_cols=33  Identities=30%  Similarity=0.458  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~   61 (182)
                      ..|+|||||.+|+-+|..+.+      .|.+ |+++++.+
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r------~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKR------LGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHH------cCCCeEEEeeecC
Confidence            479999999999999999998      7886 99998763

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.21  E-value=0.00066  Score=48.87  Aligned_cols=34  Identities=24%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|...|..|++      +|.+|+++|+++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~------~G~~V~l~d~~~~   38 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCAL------AGYDVLLNDVSAD   38 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHH------CCCeEEEEeCCHH
Confidence            469999999999999999999      8999999998753

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.20  E-value=0.00057  Score=49.56  Aligned_cols=33  Identities=30%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +|.|||+|..|.+.|..|++      +|.+|+++|+.+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~------~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFAR------AGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHH------CCCeeEEEeCCHH
Confidence            59999999999999999999      8999999999863

>KOG2755|consensus

Probab=97.19  E-value=0.00034  Score=48.65  Aligned_cols=34  Identities=32%  Similarity=0.557  Sum_probs=29.4

Q ss_pred             EEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+|||||++|.++|-.|+++-    +..+|+++.+++.
T Consensus         2 fivvgggiagvscaeqla~~~----psa~illitass~   35 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLE----PSAEILLITASSF   35 (334)
T ss_pred             eEEEcCccccccHHHHHHhhC----CCCcEEEEeccHH
Confidence            689999999999999999953    5679999988864

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.17  E-value=0.011  Score=43.94  Aligned_cols=35  Identities=34%  Similarity=0.585  Sum_probs=26.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEE
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLV   57 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vl   57 (182)
                      .+++|||+|.+|+-+|..|++....++...+|+|+
T Consensus       146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li  180 (364)
T TIGR03169       146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI  180 (364)
T ss_pred             ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            37999999999999999998743222222478887

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.16  E-value=0.00071  Score=46.77  Aligned_cols=33  Identities=27%  Similarity=0.581  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +++|||+|-.|.+.|..|++      .|.+|+++|+.+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~------~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSE------EGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHh------CCCceEEEEcCHH
Confidence            58999999999999999999      8999999999864

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.13  E-value=0.00082  Score=51.49  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|||.|++|+++|..|.+      .|.+|++.|+...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~------~G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKA------QGWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHH------CCCEEEEECCCCc
Confidence            48999999999999999999      8999999998764

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.10  E-value=0.00098  Score=47.82  Aligned_cols=33  Identities=27%  Similarity=0.353  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||+|..|...|..+++      .|++|+++|+.+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~------~G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCAR------AGVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHh------CCCEEEEEECCHH
Confidence            69999999999999999999      8999999998864

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.06  E-value=0.00079  Score=45.07  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=26.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||.|-.|+.+|..|++      .|++|+.+|.++.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~------~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAE------KGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHH------TTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHh------CCCEEEEEeCChH
Confidence            48999999999999999999      8999999998864

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.03  E-value=0.0012  Score=47.46  Aligned_cols=32  Identities=19%  Similarity=0.341  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||+|..|.+.|..|++      +|.+|+++|+++
T Consensus         5 kIaViGaG~mG~~iA~~la~------~G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAF------HGFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHh------cCCeEEEEeCCH
Confidence            59999999999999999999      899999999875

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.97  E-value=0.0012  Score=47.42  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||+|..|...|..|++      +|.+|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~------~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAV------SGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHh------CCCcEEEEeCCHH
Confidence            48999999999999999999      8999999998753

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.97  E-value=0.017  Score=44.54  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=26.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..|+|||||..|+-+|..+.+      .|. +|++++..+
T Consensus       282 k~VvVIGgG~~g~e~A~~~~~------~ga~~Vt~~~~~~  315 (471)
T PRK12810        282 KHVVVIGGGDTGMDCVGTAIR------QGAKSVTQRDIMP  315 (471)
T ss_pred             CEEEEECCcHHHHHHHHHHHH------cCCCeEEEccccC
Confidence            369999999999999988887      565 788666443

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.89  E-value=0.002  Score=46.74  Aligned_cols=32  Identities=31%  Similarity=0.367  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|+|||+|..|...|..|++      .|.+|+++.|+.
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~------~G~~V~lv~r~~   35 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLAR------AGLPVRLILRDR   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHh------CCCCeEEEEech
Confidence            59999999999999999999      899999999974

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.88  E-value=0.0064  Score=45.26  Aligned_cols=33  Identities=24%  Similarity=0.513  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~   62 (182)
                      +|+|||+|-.|..+|..|++      ++ .+|++.+|...
T Consensus         3 ~ilviGaG~Vg~~va~~la~------~~d~~V~iAdRs~~   36 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQ------NGDGEVTIADRSKE   36 (389)
T ss_pred             cEEEECCchhHHHHHHHHHh------CCCceEEEEeCCHH
Confidence            69999999999999999999      67 89999999853

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.88  E-value=0.0017  Score=46.68  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||+|..|...|..|++      .|.+|+++|+++.
T Consensus         5 ~I~ViGaG~mG~~iA~~la~------~G~~V~l~d~~~~   37 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFAR------TGYDVTIVDVSEE   37 (291)
T ss_pred             EEEEECccHHHHHHHHHHHh------cCCeEEEEeCCHH
Confidence            59999999999999999999      8999999998763

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.84  E-value=0.0026  Score=46.26  Aligned_cols=32  Identities=19%  Similarity=0.291  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|||+|..|.+.|..|++      .|.+|+++.|+.
T Consensus         7 ~I~IiG~GaiG~~lA~~L~~------~g~~V~~~~r~~   38 (313)
T PRK06249          7 RIGIIGTGAIGGFYGAMLAR------AGFDVHFLLRSD   38 (313)
T ss_pred             EEEEECCCHHHHHHHHHHHH------CCCeEEEEEeCC
Confidence            59999999999999999999      899999999875

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.82  E-value=0.003  Score=42.87  Aligned_cols=34  Identities=35%  Similarity=0.426  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ...|+|||+|..|..+|..|++      .|+ +++++|.+.
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~------~Gvg~i~lvD~D~   55 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLAR------AGIGKLILVDFDV   55 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHH------cCCCEEEEECCCE
Confidence            4679999999999999999999      898 699999884

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.80  E-value=0.0024  Score=49.71  Aligned_cols=35  Identities=40%  Similarity=0.600  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .+|+|||||..|+-+|..|++      .+.+|+++|+.+..
T Consensus       353 k~VvViGgG~~g~E~A~~L~~------~g~~Vtli~~~~~l  387 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAG------IVRHVTVLEFADEL  387 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHh------cCcEEEEEEeCCcC
Confidence            479999999999999999998      78899999987654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.76  E-value=0.0035  Score=42.69  Aligned_cols=32  Identities=22%  Similarity=0.400  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ..|+|||||.+|..-+..|.+      .|.+|+|++..
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~------~ga~VtVvsp~   41 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLK------AGAQLRVIAEE   41 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHH------CCCEEEEEcCC
Confidence            479999999999999999999      89999999864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.75  E-value=0.0031  Score=45.83  Aligned_cols=32  Identities=28%  Similarity=0.526  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||+|..|.+.|..|++      .|++|+++|+++
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~------~g~~V~~~d~~~   37 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFAR------KGLQVVLIDVME   37 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCeEEEEECCH
Confidence            59999999999999999999      899999999765

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.74  E-value=0.003  Score=45.55  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||+|..|...|..|++      .|.+|+++|+++.
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~------~G~~V~~~d~~~~   38 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAA------AGMDVWLLDSDPA   38 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHh------cCCeEEEEeCCHH
Confidence            59999999999999999999      8999999998753

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.74  E-value=0.0029  Score=45.71  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|||+|..|...|..|++      .|.+|++++|++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~------~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQ------AGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCeEEEEECCh
Confidence            48999999999999999999      899999999854

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.73  E-value=0.0024  Score=45.72  Aligned_cols=33  Identities=18%  Similarity=0.296  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||+|..|...|..+++      .|.+|+++|.++.
T Consensus         5 kI~VIG~G~mG~~ia~~la~------~g~~V~~~d~~~~   37 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAV------AGYDVVMVDISDA   37 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHH------CCCceEEEeCCHH
Confidence            59999999999999999999      8999999997753

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.72  E-value=0.0039  Score=40.57  Aligned_cols=31  Identities=35%  Similarity=0.398  Sum_probs=28.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEe
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE   58 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE   58 (182)
                      ...|+|||||-.|..-+..|.+      .|.+|+|+.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~------~ga~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKD------TGAFVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh------CCCEEEEEc
Confidence            3479999999999999999988      899999995

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.71  E-value=0.045  Score=44.13  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=27.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..|+|||||..|+-+|..+.+      .|. +|+++.+..
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r------~ga~~Vt~i~~~~  502 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALR------HGASNVTCAYRRD  502 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHH------cCCCeEEEeEecC
Confidence            379999999999999988888      675 699988764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.67  E-value=0.003  Score=49.66  Aligned_cols=34  Identities=29%  Similarity=0.495  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+|+|||||.+|+-+|..|++      .|.+|+++++.+.
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~------~g~~Vtli~~~~~  177 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTR------YASKVTVIVREPD  177 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHc------cCCEEEEEEeCCc
Confidence            479999999999999999998      7999999998864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=96.67  E-value=0.0032  Score=45.54  Aligned_cols=30  Identities=23%  Similarity=0.377  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEec
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK   59 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~   59 (182)
                      .|+|||+|..|...|..|++      .|.+|++++|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~------~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLE------AGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHH------CCCceEEEec
Confidence            48999999999999999999      8999999998

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.65  E-value=0.0023  Score=38.49  Aligned_cols=34  Identities=29%  Similarity=0.421  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...|+|||||..|..-+..|.+      .|.+|+|+....
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~------~gA~v~vis~~~   40 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLE------AGAKVTVISPEI   40 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCC------CTBEEEEEESSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHh------CCCEEEEECCch
Confidence            3579999999999999999998      899999998763

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.65  E-value=0.0033  Score=46.49  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|.|||.|-+||+.|..|++      .|++|+++|..+
T Consensus         2 kI~viGtGYVGLv~g~~lA~------~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAE------LGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHH------cCCeEEEEeCCH
Confidence            58999999999999999999      899999999885

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.64  E-value=0.0046  Score=42.03  Aligned_cols=32  Identities=31%  Similarity=0.442  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ..|+|||||-.|...+..|.+      .|.+|+|+++.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~------~ga~V~VIs~~   42 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLK------YGAHIVVISPE   42 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHH------CCCeEEEEcCC
Confidence            479999999999999999998      89999999754

>PRK10262 thioredoxin reductase; Provisional

Probab=96.62  E-value=0.004  Score=45.44  Aligned_cols=35  Identities=23%  Similarity=0.453  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ..++|||+|..|+-+|..|++      .+.+|+++++.+..
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~------~~~~Vtlv~~~~~~  181 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSN------IASEVHLIHRRDGF  181 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHh------hCCEEEEEEECCcc
Confidence            479999999999999999998      78999999997643

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.61  E-value=0.0042  Score=39.29  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      +..|+|||+|..|+.+|..|++      .|. +++++|.+..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~------~Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLAR------SGVGKITLVDDDIV   37 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHH------HTTSEEEEEESSBB
T ss_pred             CCEEEEECcCHHHHHHHHHHHH------hCCCceeecCCcce
Confidence            3579999999999999999999      677 8999998864

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>KOG1439|consensus

Probab=96.61  E-value=0.0012  Score=48.56  Aligned_cols=42  Identities=21%  Similarity=0.341  Sum_probs=37.1

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      |+.++||+|+|-|..=+..+..|+.      .|.+|+.+||++.-|+.
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~------~gkkVLhiDrN~yYG~~   42 (440)
T KOG1439|consen    1 MDEEYDVIVLGTGLTECILSGALSV------DGKKVLHIDRNDYYGGE   42 (440)
T ss_pred             CCCceeEEEEcCCchhheeeeeeee------cCcEEEEEeCCCCCCcc
Confidence            3556999999999999999999999      89999999999876653

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.61  E-value=0.0053  Score=37.62  Aligned_cols=32  Identities=34%  Similarity=0.566  Sum_probs=28.3

Q ss_pred             EEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      |+|+|.|..|..++..|.+      .+.+|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~------~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKE------GGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHH------TTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHh------CCCEEEEEECCcH
Confidence            6899999999999999998      7789999999863

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.60  E-value=0.0042  Score=47.53  Aligned_cols=33  Identities=36%  Similarity=0.507  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|+|+|..|+.+|..|++      .|.+|+++|+..
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~------~G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKK------LGAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCc
Confidence            469999999999999999999      899999999874

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.60  E-value=0.0062  Score=40.12  Aligned_cols=34  Identities=29%  Similarity=0.343  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...|+|+|+|.+|..++..|..      .|.+|+++|..+
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~------lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKG------LGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHH------TT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhH------CCCEEEeccCCH
Confidence            4689999999999999999998      799999999875

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.57  E-value=0.0044  Score=48.34  Aligned_cols=35  Identities=37%  Similarity=0.550  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .+|+|||||.+|+-+|..|+.      .+.+|+++++.+..
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~------~~~~Vtlv~~~~~l  386 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAG------IVKHVTVLEFAPEL  386 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHh------cCCEEEEEEECccc
Confidence            479999999999999999998      78999999988754

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.55  E-value=0.0045  Score=46.13  Aligned_cols=34  Identities=29%  Similarity=0.396  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..+++|||+|.+|..++..|..      .|.+|+++|+.+
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~------lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANG------LGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHH------CCCeEEEEECCH
Confidence            3579999999999999999998      799999999874

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.0068  Score=44.45  Aligned_cols=39  Identities=23%  Similarity=0.281  Sum_probs=35.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG   65 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g   65 (182)
                      ..+||+|.|-|+.=+..+..|+.      .|.+|+.||+++.-|+
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~------~~k~VlhiD~Nd~YG~   43 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSW------DGKNVLHIDKNDYYGS   43 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhh------cCceEEEEeCCCccCc
Confidence            36999999999999999999999      8999999999986553

>KOG4405|consensus

Probab=96.54  E-value=0.0037  Score=46.43  Aligned_cols=44  Identities=20%  Similarity=0.259  Sum_probs=38.8

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      .+.++|+||||-|..=.-+|.+.++      .|.+|+=+|+++.-||.+.
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSr------sG~sVLHlDsn~yYGg~wa   48 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSR------SGSSVLHLDSNEYYGGNWA   48 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhh------cCCceEeccCccccCCccc
Confidence            3467999999999999999999999      8999999999998887654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.52  E-value=0.0078  Score=38.14  Aligned_cols=34  Identities=26%  Similarity=0.393  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~   61 (182)
                      ...++|||+|-+|-+++..|..      .|.+ |+|+.|..
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~------~g~~~i~i~nRt~   46 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAA------LGAKEITIVNRTP   46 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHH------TTSSEEEEEESSH
T ss_pred             CCEEEEECCHHHHHHHHHHHHH------cCCCEEEEEECCH
Confidence            4579999999999999999999      7876 99998874

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.51  E-value=0.0047  Score=46.77  Aligned_cols=33  Identities=18%  Similarity=0.324  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||.|..|+.+|..|++      .|++|+++|+++.
T Consensus         5 kI~VIGlG~~G~~~A~~La~------~G~~V~~~D~~~~   37 (415)
T PRK11064          5 TISVIGLGYIGLPTAAAFAS------RQKQVIGVDINQH   37 (415)
T ss_pred             EEEEECcchhhHHHHHHHHh------CCCEEEEEeCCHH
Confidence            59999999999999999999      8999999998764

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.50  E-value=0.0078  Score=43.98  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ..|+|||+|..|.++|+.++.      .|+ +++|+|..+.
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~------~gl~~i~LvDi~~~   41 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVL------KNLGDVVLFDIVKN   41 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCCeEEEEeCCCc
Confidence            579999999999999999988      785 8999998764

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.50  E-value=0.0048  Score=45.44  Aligned_cols=32  Identities=25%  Similarity=0.409  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|.|||+|..|...|..|++      .|.+|++++|.+
T Consensus         4 kI~IiG~G~mG~~~A~~L~~------~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAA------AGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHh------cCCcEEEEecHH
Confidence            59999999999999999999      899999999864

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.50  E-value=0.031  Score=47.18  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..|+|||+|+.|+.+|..|++      .|. .|+|+|..+
T Consensus       318 k~VvViG~G~~g~e~A~~L~~------~G~~vV~vv~~~~  351 (985)
T TIGR01372       318 KRIVVATNNDSAYRAAADLLA------AGIAVVAIIDARA  351 (985)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCceEEEEccCc
Confidence            479999999999999999999      785 588998653

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.50  E-value=0.0059  Score=44.36  Aligned_cols=33  Identities=30%  Similarity=0.411  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~~   62 (182)
                      +|.|||+|..|.++|+.|++      .|  ..++++|+...
T Consensus         2 kI~IIGaG~VG~~~a~~l~~------~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLL------RGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHH------cCCCCEEEEEECCch
Confidence            59999999999999999998      77  48999998753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.48  E-value=0.0057  Score=44.77  Aligned_cols=32  Identities=34%  Similarity=0.511  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|.|||+|..|.+.|..|++      .|.+|+++.|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~------~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSS------KKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHH------CCCeEEEEecCH
Confidence            48999999999999999999      899999999864

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=96.47  E-value=0.0058  Score=47.47  Aligned_cols=34  Identities=29%  Similarity=0.351  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|...|..|++      .|++|+++|+.+.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~------aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQ------AGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCeEEEEeCCHH
Confidence            359999999999999999999      8999999998864

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.47  E-value=0.0065  Score=44.70  Aligned_cols=34  Identities=29%  Similarity=0.455  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ...|+|||+|-.|..+|..|++      .|. +++|+|.+.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~------aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVR------AGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH------cCCCEEEEEcCCc
Confidence            4579999999999999999999      887 899999985

>PRK12831 putative oxidoreductase; Provisional

Probab=96.46  E-value=0.0055  Score=47.11  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      -.|+|||||.+|+-+|..|.+      .|.+|+++++..
T Consensus       282 k~VvVIGgG~va~d~A~~l~r------~Ga~Vtlv~r~~  314 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALR------LGAEVHIVYRRS  314 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHH------cCCEEEEEeecC
Confidence            479999999999999999999      799999999865

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.44  E-value=0.0079  Score=42.65  Aligned_cols=37  Identities=24%  Similarity=0.250  Sum_probs=32.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAEV   63 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~~   63 (182)
                      ....|+|||.|..|+.+|..|++      .| -+++|+|.+...
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar------~GVg~itLiD~D~V~   66 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALAR------TGIGAITLIDMDDVC   66 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHH------cCCCEEEEEeCCEec
Confidence            34689999999999999999999      78 489999988643

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=96.43  E-value=0.0051  Score=47.70  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||+|..|...|..+++      .|++|+++|+.+.
T Consensus         7 kV~VIGaG~MG~gIA~~la~------aG~~V~l~d~~~e   39 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAAS------AGHQVLLYDIRAE   39 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHh------CCCeEEEEeCCHH
Confidence            59999999999999999999      8999999998864

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.42  E-value=0.0058  Score=45.25  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~~   62 (182)
                      ..++|||+|..|+-+|..|.+      .|.+ |+|+++.+.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~------~g~~~Vtvi~~~~~  207 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVL------LGAEKVYLAYRRTI  207 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHH------cCCCeEEEEeecch
Confidence            369999999999999999988      7886 999998653

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=96.42  E-value=0.0075  Score=43.76  Aligned_cols=32  Identities=31%  Similarity=0.618  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      .|.|||+|..|..+|+.|+.      .|+ +|+++|...
T Consensus         3 KV~VIGaG~vG~~iA~~la~------~g~~~VvlvDi~~   35 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAE------KELADLVLLDVVE   35 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHH------cCCCeEEEEeCCC
Confidence            58999999999999999998      665 899999854

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK04148 hypothetical protein; Provisional

Probab=96.40  E-value=0.0044  Score=39.01  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..+++||.| .|...|..|++      .|.+|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~------~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKE------SGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHH------CCCEEEEEECCHH
Confidence            369999999 89999999999      8999999998764

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.40  E-value=0.007  Score=45.61  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|+|.|+.|+.+|..+..      .|.+|+++|.++.
T Consensus       203 ktVvViG~G~IG~~va~~ak~------~Ga~ViV~d~d~~  236 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRG------QGARVIVTEVDPI  236 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHH------CCCEEEEEECChh
Confidence            479999999999999999887      7999999998763

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.40  E-value=0.0079  Score=44.27  Aligned_cols=35  Identities=31%  Similarity=0.464  Sum_probs=31.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ....|+|||+|-.|..+|..|++      .|. +++++|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~------aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVR------AGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH------cCCCeEEEEeCCc
Confidence            35689999999999999999999      788 999999875

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.38  E-value=0.0059  Score=47.23  Aligned_cols=34  Identities=26%  Similarity=0.290  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...|+|+|+|++|+.++..+..      .|.+|+++|.++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~------lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGS------LGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH------CCCEEEEEeCCH
Confidence            4579999999999999888877      788999999886

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.38  E-value=0.0071  Score=44.34  Aligned_cols=32  Identities=28%  Similarity=0.378  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||+|..|...|..|++      .|.+|++++|.+
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~------~G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAAS------KGVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCH
Confidence            59999999999999999999      899999999974

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.37  E-value=0.0091  Score=40.61  Aligned_cols=36  Identities=25%  Similarity=0.396  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ....|+|||.|..|..+|..|++      .|. +++++|.+..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~------~Gv~~i~lvD~d~v   56 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAG------AGVGTIVIVDDDHV   56 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH------cCCCeEEEecCCEE
Confidence            35689999999999999999999      787 8999998753

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.30  E-value=0.0069  Score=49.07  Aligned_cols=34  Identities=18%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|..+|..+++      .|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~------~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSAS------KGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHh------CCCeEEEEeCCHH
Confidence            359999999999999999999      8999999998853

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.27  E-value=0.0079  Score=43.92  Aligned_cols=32  Identities=28%  Similarity=0.432  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|.|||+|..|...|..|++      .|.+|+++++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~------~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLAR------NGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCEEEEEECCH
Confidence            59999999999999999999      899999999874

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.24  E-value=0.011  Score=39.22  Aligned_cols=32  Identities=28%  Similarity=0.372  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      .|+|||+|..|..+|..|++      .|. +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~------~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLAR------SGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHH------cCCCeEEEEeCCE
Confidence            38999999999999999999      788 599999885

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.24  E-value=0.011  Score=38.88  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=29.5

Q ss_pred             cccEEEECCCh-HHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGP-AGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~-~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...++|||+|- +|..+|..|.+      .|.+|+++.|..
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~------~g~~V~v~~r~~   78 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLN------RNATVTVCHSKT   78 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhh------CCCEEEEEECCc
Confidence            46899999995 69999999998      788999999874

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.23  E-value=0.0071  Score=45.78  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||.|..|+.+|..|++      .|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~------~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLAD------LGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHh------cCCeEEEEECCHH
Confidence            48999999999999999999      8999999998764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=96.23  E-value=0.008  Score=48.68  Aligned_cols=34  Identities=15%  Similarity=0.246  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|..+|..+++      .|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~------~G~~V~l~d~~~~  347 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSAS------KGTPIVMKDINQH  347 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHh------CCCeEEEEeCCHH
Confidence            369999999999999999999      8999999998853

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.21  E-value=0.0055  Score=43.90  Aligned_cols=35  Identities=29%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...+|+|||||.+|.-+|..+.-      -|.+|+++|.+.
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~g------lgA~Vtild~n~  201 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIG------LGADVTILDLNI  201 (371)
T ss_pred             CCccEEEECCccccchHHHHHhc------cCCeeEEEecCH
Confidence            34689999999999999988876      789999999984

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.18  E-value=0.017  Score=36.95  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=28.6

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +|+|||+ |..|.++|+.|...    +..-++.++|....
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~----~l~~ei~L~D~~~~   37 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQ----GLADEIVLIDINED   37 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT----TTSSEEEEEESSHH
T ss_pred             EEEEECCCChHHHHHHHHHHhC----CCCCceEEeccCcc
Confidence            5899999 99999999999981    23347999998753

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.18  E-value=0.013  Score=41.00  Aligned_cols=36  Identities=28%  Similarity=0.336  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEV   63 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~   63 (182)
                      ...|+|||+|..|..+|..|++      .|. +++++|.+...
T Consensus        24 ~~~VlvvG~GglGs~va~~La~------~Gvg~i~lvD~D~ve   60 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAA------AGVGNLTLLDFDTVS   60 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHH------cCCCEEEEEeCCccc
Confidence            4689999999999999999999      775 89999988643

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=96.17  E-value=0.01  Score=46.08  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||+|..|...|..|++      +|++|+++|+.+.
T Consensus         6 kIavIG~G~MG~~iA~~la~------~G~~V~v~D~~~~   38 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLL------AGIDVAVFDPHPE   38 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHh------CCCeEEEEeCCHH
Confidence            59999999999999999999      8999999998753

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.16  E-value=0.015  Score=37.15  Aligned_cols=33  Identities=27%  Similarity=0.444  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      .|+|||.|-.|..+|..|++      .|. +++++|.+..
T Consensus         1 ~VliiG~GglGs~ia~~L~~------~Gv~~i~ivD~d~v   34 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLAR------SGVGKITLIDFDTV   34 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHH------CCCCEEEEEcCCCc
Confidence            38999999999999999999      787 7999998754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=96.12  E-value=0.0077  Score=48.92  Aligned_cols=34  Identities=24%  Similarity=0.329  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|..+|..++.      .|++|+++|..+.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~------~G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVD------KGLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHh------CCCcEEEecCCHH
Confidence            369999999999999999999      8999999998863

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.12  E-value=0.013  Score=37.17  Aligned_cols=32  Identities=28%  Similarity=0.334  Sum_probs=27.0

Q ss_pred             EEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ++|+|+|..+..++..++.      -|++|+++|-++.
T Consensus         1 L~I~GaG~va~al~~la~~------lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAAL------LGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHH------CTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHh------CCCEEEEEcCCcc
Confidence            5899999999999998888      8999999998864

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.10  E-value=0.011  Score=42.75  Aligned_cols=32  Identities=34%  Similarity=0.502  Sum_probs=28.3

Q ss_pred             EEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          25 VVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        25 v~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      |.|||+|..|..+|..|+.      .|+ +|+++|..+.
T Consensus         1 I~IIGaG~vG~~ia~~la~------~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLAL------KELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHh------CCCcEEEEEeCCCc
Confidence            5799999999999999998      666 9999998753

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.09  E-value=0.015  Score=40.87  Aligned_cols=35  Identities=31%  Similarity=0.367  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ...|+|||.|..|+.+|..|++      .|. +++++|.+..
T Consensus        32 ~~~VliiG~GglGs~va~~La~------~Gvg~i~lvD~D~v   67 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAA------AGVGTLTLVDFDTV   67 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH------cCCCEEEEEcCCEE
Confidence            4689999999999999999999      786 8999988753

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.08  E-value=0.012  Score=45.19  Aligned_cols=33  Identities=33%  Similarity=0.476  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      -.|+|||||.+|+-+|..|.+      .|. +|+++++..
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~------~G~~~Vtlv~~~~  307 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKR------LGAESVTIVYRRG  307 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCCeEEEeeecC
Confidence            479999999999999999998      787 899999864

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.08  E-value=0.0099  Score=42.57  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||.|..|.+.|..|.+      +|.+|+++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~------~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRS------LGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            48999999999999999998      899999999875

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.07  E-value=0.015  Score=39.90  Aligned_cols=34  Identities=29%  Similarity=0.373  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ...|+|||+|..|..+|..|++      .|. +++++|.+.
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~------~Gvg~i~lvD~D~   62 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALAR------SGVGNLKLVDFDV   62 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHH------cCCCeEEEEeCCE
Confidence            4689999999999999999999      787 599999885

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.07  E-value=0.013  Score=42.02  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..++|||+|-+|.++++.|++      .|. +|+|++|..
T Consensus       128 k~vlIlGaGGaaraia~aL~~------~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLT------LGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHH------cCCCEEEEECCCH
Confidence            469999999999999999998      787 799999875

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.07  E-value=0.015  Score=42.26  Aligned_cols=33  Identities=33%  Similarity=0.472  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      .|.|||+|..|..+|..++.      .|+ +|.++|....
T Consensus         4 KI~VIGaG~vG~~ia~~la~------~~~~ev~L~D~~~~   37 (307)
T PRK06223          4 KISIIGAGNVGATLAHLLAL------KELGDVVLFDIVEG   37 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCeEEEEEECCCc
Confidence            69999999999999999998      565 9999998653

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.06  E-value=0.014  Score=42.48  Aligned_cols=32  Identities=19%  Similarity=0.241  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||+|..|.+.|..|++      .|.+|.+++|..
T Consensus         6 ~I~iiG~G~~G~~lA~~l~~------~G~~V~~~~r~~   37 (308)
T PRK14619          6 TIAILGAGAWGSTLAGLASA------NGHRVRVWSRRS   37 (308)
T ss_pred             EEEEECccHHHHHHHHHHHH------CCCEEEEEeCCC
Confidence            59999999999999999999      899999999875

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.04  E-value=0.0094  Score=48.27  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHH-HhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLK-QLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~-~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|.|||+|..|...|..++ .      .|++|+++|.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~------~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATK------AGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHH------cCCeEEEEeCCH
Confidence            46999999999999999998 6      799999999875

>PRK08328 hypothetical protein; Provisional

Probab=96.02  E-value=0.017  Score=40.18  Aligned_cols=35  Identities=26%  Similarity=0.411  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ...|+|||+|-.|+.+|..|++      .|. +++++|.+..
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~------~Gvg~i~lvD~D~v   62 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAA------AGVGRILLIDEQTP   62 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH------cCCCEEEEEcCCcc
Confidence            4679999999999999999999      786 7999987753

>KOG3851|consensus

Probab=96.02  E-value=0.0094  Score=43.03  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=30.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...+.|+|||||..|++.|..+.+-    ...-+|.|+|-..
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rk----l~~g~vgIvep~e   74 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRK----LGSGSVGIVEPAE   74 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhh----cCCCceEEecchh
Confidence            3568999999999999999999872    2234899998775

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.96  E-value=0.017  Score=37.85  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.+||-|..|...|..|.+      +|++|.++|+.+.
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~------~g~~v~~~d~~~~   35 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAK------AGYEVTVYDRSPE   35 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHH------TTTEEEEEESSHH
T ss_pred             EEEEEchHHHHHHHHHHHHh------cCCeEEeeccchh
Confidence            59999999999999999999      8999999998853

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=95.92  E-value=0.012  Score=42.40  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||+|..|...|..++.      .|++|+++|.++
T Consensus         5 kv~ViGaG~MG~gIA~~~A~------~G~~V~l~D~~~   36 (307)
T COG1250           5 KVAVIGAGVMGAGIAAVFAL------AGYDVVLKDISP   36 (307)
T ss_pred             EEEEEcccchhHHHHHHHhh------cCCceEEEeCCH
Confidence            59999999999999999998      789999999984

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.90  E-value=0.019  Score=41.74  Aligned_cols=33  Identities=30%  Similarity=0.469  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~~   62 (182)
                      .|+|||+|-+|.++|+.|+.      .|  .+++++|+...
T Consensus         2 kI~IIGaG~vG~~~a~~l~~------~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVN------QGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHh------cCCCCEEEEEeCCcc
Confidence            58999999999999999998      67  47999998754

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.89  E-value=0.017  Score=43.42  Aligned_cols=35  Identities=26%  Similarity=0.274  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...|+|||.|..|..+|..|..      .|.+|+++|.++.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~------~Ga~ViV~d~dp~  229 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARG------MGARVIVTEVDPI  229 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhh------CcCEEEEEeCChh
Confidence            3479999999999999999987      7999999998764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.89  E-value=0.017  Score=39.99  Aligned_cols=33  Identities=33%  Similarity=0.481  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCce---EEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELK---VCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~---v~vlE~~~   61 (182)
                      ..++|+|+|-+|..+|..|.+      .|.+   +.+++|..
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~------~G~~~~~i~ivdr~g   61 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLA------AGAKPENIVVVDSKG   61 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHH------cCcCcceEEEEeCCC
Confidence            479999999999999999998      7874   99999984

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.88  E-value=0.021  Score=39.63  Aligned_cols=35  Identities=34%  Similarity=0.418  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ...|+|||.|..|+.+|..|++      .|. +++++|.+..
T Consensus        21 ~~~VlivG~GglGs~va~~La~------~Gvg~i~lvD~D~v   56 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAA------AGVGKLGLVDDDVV   56 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH------cCCCEEEEEcCCEE
Confidence            4689999999999999999999      787 8999987753

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=95.85  E-value=0.014  Score=47.30  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHH-HhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLK-QLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~-~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|...|..++ +      .|++|+++|.++.
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~------~G~~V~l~d~~~~  339 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATK------AGIPVRIKDINPQ  339 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHH------cCCeEEEEeCCHH
Confidence            36999999999999999887 5      7999999998753

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.84  E-value=0.26  Score=39.76  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=27.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..|+|||+|..|+-.|..+.+      .|. +|+++++..
T Consensus       452 k~vvViGgG~~a~d~a~~~~~------~Ga~~Vt~v~rr~  485 (639)
T PRK12809        452 KRVVVLGGGDTTMDCLRTSIR------LNAASVTCAYRRD  485 (639)
T ss_pred             CeEEEECCcHHHHHHHHHHHH------cCCCeEEEeeecC
Confidence            479999999999999888777      674 799998764

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=95.81  E-value=0.02  Score=37.26  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=27.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|+|-|..|-.+|..|..      .|.+|+|.|.+|.
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~------~Ga~V~V~e~DPi   57 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRG------LGARVTVTEIDPI   57 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHH------TT-EEEEE-SSHH
T ss_pred             CEEEEeCCCcccHHHHHHHhh------CCCEEEEEECChH
Confidence            469999999999999999988      8999999999874

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.79  E-value=0.016  Score=42.03  Aligned_cols=32  Identities=25%  Similarity=0.460  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|+|+|..|+..|+.|++      .|.+|+++=|.+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~------~g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAK------AGHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHh------CCCeEEEEecHH
Confidence            48999999999999999999      788888887775

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.77  E-value=0.018  Score=44.40  Aligned_cols=35  Identities=14%  Similarity=0.307  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|||.|-.|+.+|..|++    +|+|.+|+.+|.++.
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~----~g~g~~V~gvD~~~~   37 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIAL----KCPDIEVVVVDISVP   37 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHh----cCCCCeEEEEECCHH
Confidence            49999999999999999998    223688999998763

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.74  E-value=0.021  Score=41.25  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...++|||.|.+|..++..|..      .|.+|+++++.+
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~------~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKA------LGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            4579999999999999999998      799999999885

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.74  E-value=0.027  Score=38.19  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ...|+|||.|..|+.+|..|++      .|. +++++|.+..
T Consensus        19 ~s~VlviG~gglGsevak~L~~------~GVg~i~lvD~d~v   54 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVL------AGIDSITIVDHRLV   54 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHH------cCCCEEEEEECCcC
Confidence            4689999999999999999999      787 5999997753

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=95.72  E-value=0.024  Score=39.05  Aligned_cols=32  Identities=22%  Similarity=0.430  Sum_probs=28.7

Q ss_pred             cEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.||| +|..|.++|..|++      .|.+|++++|++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~------~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAK------AGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHh------CCCEEEEEEcCH
Confidence            489997 69999999999999      889999998865

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=95.69  E-value=0.018  Score=41.44  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||.|..|...|..|++      .|.+|+++++.+.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~------~G~~V~~~dr~~~   33 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAK------AGYQLHVTTIGPE   33 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHH------CCCeEEEEcCCHH
Confidence            37899999999999999999      8999999998853

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.68  E-value=0.02  Score=44.32  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...++|+|+|++|+.++..+..      .|.+|+++|+++
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~------lGA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANS------LGAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCH
Confidence            4689999999999999988888      789999999875

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG1346|consensus

Probab=95.64  E-value=0.021  Score=42.82  Aligned_cols=132  Identities=22%  Similarity=0.229  Sum_probs=71.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      +.....+|||+|.+..+++.....    +-++.+|.+|.-.+...-.-       +....++   |     .+.++....
T Consensus       176 p~hvp~liigggtaAfaa~rai~s----~da~A~vl~iseepelPYmR-------PPLSKEL---W-----~~~dpn~~k  236 (659)
T KOG1346|consen  176 PKHVPYLIIGGGTAAFAAFRAIKS----NDATAKVLMISEEPELPYMR-------PPLSKEL---W-----WYGDPNSAK  236 (659)
T ss_pred             cccCceeEEcCCchhhhccccccc----CCCCceEEeeccCccCcccC-------CCcchhc---e-----ecCCCChhh
Confidence            345679999999987666555543    11567888887665432110       0000000   0     011111100


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE-----EEEeCCEE
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK-----GIATGDVG  174 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~-----~v~~~~~v  174 (182)
                      .+++.      ++..-...-++.++++.+++.+|-..     ..-|+-++.+.+|+.|.. ++..++     .+-.++.+
T Consensus       237 ~lrfk------qwsGkeRsiffepd~FfvspeDLp~~-----~nGGvAvl~G~kvvkid~-~d~~V~LnDG~~I~YdkcL  304 (659)
T KOG1346|consen  237 KLRFK------QWSGKERSIFFEPDGFFVSPEDLPKA-----VNGGVAVLRGRKVVKIDE-EDKKVILNDGTTIGYDKCL  304 (659)
T ss_pred             heeec------ccCCccceeEecCCcceeChhHCccc-----ccCceEEEeccceEEeec-ccCeEEecCCcEeehhhee
Confidence            00000      00001112345566778888776653     234689999999999864 333222     25568999


Q ss_pred             EecCCCCC
Q psy2240         175 IAKDGSPK  182 (182)
Q Consensus       175 i~adG~~~  182 (182)
                      |+++++||
T Consensus       305 IATG~~Pk  312 (659)
T KOG1346|consen  305 IATGVRPK  312 (659)
T ss_pred             eecCcCcc
Confidence            99999986

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.64  E-value=0.03  Score=38.89  Aligned_cols=35  Identities=31%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ...|+|||.|-.|..+|..|++      .|. +++|+|.+..
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar------~GVg~i~LvD~D~V   46 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALAR------SGVGKLTLIDFDVV   46 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH------cCCCEEEEECCCEE
Confidence            4679999999999999999999      787 8999998753

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.63  E-value=0.032  Score=40.63  Aligned_cols=33  Identities=39%  Similarity=0.589  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ..|.|||+|-.|.++|+.|+.      .++  ++.|+|...
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~------~~~~~el~LiD~~~   38 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILA------KGLADELVLVDVVE   38 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHh------cCCCCEEEEEeCCc
Confidence            479999999999999999988      454  799999765

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.61  E-value=0.023  Score=43.52  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .++|+|+|.+|.++|..|++      .|.+|++.|+..
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~------~G~~V~~~d~~~   38 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHK------LGANVTVNDGKP   38 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHH------CCCEEEEEcCCC
Confidence            58999999999999999999      899999999764

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.60  E-value=0.033  Score=37.77  Aligned_cols=34  Identities=15%  Similarity=0.275  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ...|+|||.|..|+.+|..|++      .|. +++++|.+.
T Consensus        21 ~s~VlIiG~gglG~evak~La~------~GVg~i~lvD~d~   55 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVL------SGIGSLTILDDRT   55 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHH------cCCCEEEEEECCc
Confidence            4689999999999999999999      887 699998775

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK08223 hypothetical protein; Validated

Probab=95.58  E-value=0.031  Score=40.03  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=31.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ....|+|||+|-.|+.+|..|++      .|+ +++++|.+..
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~------aGVG~i~lvD~D~V   62 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLAR------LGIGKFTIADFDVF   62 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHH------hCCCeEEEEeCCCc
Confidence            35689999999999999999999      786 7999998753

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=95.56  E-value=0.019  Score=44.25  Aligned_cols=34  Identities=18%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+|.|||.|..|...|..|++      +|++|.+++|.+.
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~------~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIAS------RGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHH------CCCeEEEEeCCHH
Confidence            479999999999999999999      8999999999864

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.55  E-value=0.028  Score=42.60  Aligned_cols=34  Identities=29%  Similarity=0.338  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|+|.|..|..+|..|..      .|.+|+++|+.+.
T Consensus       213 k~VlViG~G~IG~~vA~~lr~------~Ga~ViV~d~dp~  246 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRG------LGARVIVTEVDPI  246 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCEEEEEcCCch
Confidence            469999999999999999988      7999999998764

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.55  E-value=0.034  Score=37.77  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|+|.|-.|..+|..|.+      .|.+|++.|+++
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~------~G~~Vvv~D~~~   61 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLE------EGAKLIVADINE   61 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHH------CCCEEEEEcCCH
Confidence            369999999999999999999      899999999764

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.52  E-value=0.027  Score=40.93  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ..|.|||.|..|.+.|..|.+      .|.  +|+++++.+
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~------~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRR------LGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHh------cCCCcEEEEEECCH
Confidence            369999999999999999998      674  899999875

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.52  E-value=0.025  Score=43.87  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ..|+|+|.|.+|++++..|.+      .|.+|++.|+.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~------~G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTR------FGARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHH------CCCEEEEEcCC
Confidence            369999999999999998888      89999999965

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.51  E-value=0.034  Score=40.61  Aligned_cols=33  Identities=24%  Similarity=0.480  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ..|.|||+|-.|.++|+.|+.      .++  .+.|+|...
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~------~~~~~el~L~D~~~   41 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVN------QGIADELVIIDINK   41 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHh------cCCCCEEEEEeCCC
Confidence            479999999999999999988      676  799999864

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.50  E-value=0.028  Score=40.46  Aligned_cols=34  Identities=21%  Similarity=0.373  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||.|..|.++|..|..      .|.+|++++|.+.
T Consensus       152 k~v~IiG~G~iG~avA~~L~~------~G~~V~v~~R~~~  185 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSA------LGARVFVGARSSA  185 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHH------CCCEEEEEeCCHH
Confidence            479999999999999999988      7999999998753

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>KOG2495|consensus

Probab=95.47  E-value=0.0093  Score=44.61  Aligned_cols=40  Identities=40%  Similarity=0.662  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcC--------CCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDG--------KELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~--------~g~~v~vlE~~~~   62 (182)
                      ..++||||||+|.-.|.+|+.+-+++-        .-++|+++|+.+.
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~  266 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH  266 (491)
T ss_pred             EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence            479999999999999999976433111        2368999999873

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.47  E-value=0.028  Score=41.70  Aligned_cols=32  Identities=34%  Similarity=0.516  Sum_probs=25.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      .|+|+|+|+.||.++..+..      .|. +|+++|+.+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~------~Ga~~Viv~d~~~  203 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKL------LGASVVIVVDRSP  203 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHH------cCCceEEEeCCCH
Confidence            59999999999999555555      664 677778875

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=95.47  E-value=0.031  Score=41.20  Aligned_cols=31  Identities=26%  Similarity=0.235  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC--------ceEEEEecC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE--------LKVCLVEKA   60 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--------~~v~vlE~~   60 (182)
                      +|.|||+|..|.++|..|++      +|        .+|.++.++
T Consensus         1 kI~VIGaG~wGtALA~~la~------ng~~~~~~~~~~V~lw~~~   39 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAE------NARALPELFEESVRMWVFE   39 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHH------cCCcccccCCceEEEEEec
Confidence            48999999999999999998      78        899999873

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=95.46  E-value=0.038  Score=38.51  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      .|+|||+|-.|+.++..|++      .|. +++++|.+..
T Consensus         1 kVlvvG~GGlG~eilk~La~------~Gvg~i~ivD~D~V   34 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLAL------MGFGQIHVIDMDTI   34 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHH------cCCCeEEEEeCCEE
Confidence            38999999999999999999      676 7999998753

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.45  E-value=0.048  Score=31.54  Aligned_cols=32  Identities=31%  Similarity=0.450  Sum_probs=28.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCC-CceEEEEec
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGK-ELKVCLVEK   59 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~~v~vlE~   59 (182)
                      ...++|+|.|.+|..++..|.+      . +.++.+++|
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~------~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLAD------EGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------cCCCEEEEEcC
Confidence            3469999999999999999988      5 678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.45  E-value=0.029  Score=43.14  Aligned_cols=33  Identities=24%  Similarity=0.257  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|+|.|.+|.++|..|.+      .|.+|++.|+.+
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~------~G~~V~~~D~~~   47 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVK------LGAKVTAFDKKS   47 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHH------CCCEEEEECCCC
Confidence            369999999999999999998      899999999764

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=95.44  E-value=0.037  Score=38.73  Aligned_cols=42  Identities=26%  Similarity=0.361  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhh---hhcC--CCceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLA---EKDG--KELKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~---~~~~--~g~~v~vlE~~~~   62 (182)
                      ....|+|||+|-.|+.++..|++..   ..-|  .|.+++|+|.+..
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V   56 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV   56 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence            4568999999999999999999831   0000  1349999998753

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.43  E-value=0.041  Score=40.26  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=29.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~   62 (182)
                      ...|+|||+|..|.++|+.|+.      .| .+++|+|....
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~------~~~~~l~L~Di~~~   40 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQ------KNLGDVVLYDVIKG   40 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHH------CCCCeEEEEECCCc
Confidence            3479999999999999999988      66 58999998753

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=0.017  Score=42.32  Aligned_cols=35  Identities=40%  Similarity=0.564  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .||+|||||-+|.-+|+.|+-      --..|+++|=.+..
T Consensus       355 K~VAVIGGGNSGvEAAIDLAG------iv~hVtllEF~~eL  389 (520)
T COG3634         355 KRVAVIGGGNSGVEAAIDLAG------IVEHVTLLEFAPEL  389 (520)
T ss_pred             ceEEEECCCcchHHHHHhHHh------hhheeeeeecchhh
Confidence            489999999999999999965      22489999977654

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.35  E-value=0.04  Score=41.12  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ...|+|||+|..|+.+|..|++      .|. +++++|.+.
T Consensus        41 ~~~VliiG~GglG~~v~~~La~------~Gvg~i~ivD~D~   75 (370)
T PRK05600         41 NARVLVIGAGGLGCPAMQSLAS------AGVGTITLIDDDT   75 (370)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH------cCCCEEEEEeCCE
Confidence            4689999999999999999999      786 899999885

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=95.34  E-value=0.03  Score=42.08  Aligned_cols=32  Identities=19%  Similarity=0.378  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||.|..|+.+|..++.       |++|+++|++..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-------G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-------NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-------CCcEEEEECCHH
Confidence            48999999999999987764       799999999864

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.33  E-value=0.037  Score=39.87  Aligned_cols=33  Identities=15%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~   61 (182)
                      ..++|+|+|-+|.++|+.|++      .|.+ |+|+.|..
T Consensus       127 k~vlI~GAGGagrAia~~La~------~G~~~V~I~~R~~  160 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCAL------DGAKEITIFNIKD  160 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHH------CCCCEEEEEeCCc
Confidence            358999999999999999998      7886 99999864

>KOG0024|consensus

Probab=95.33  E-value=0.044  Score=39.65  Aligned_cols=46  Identities=17%  Similarity=0.322  Sum_probs=32.8

Q ss_pred             CccccccccccccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          10 DQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        10 ~~~~~~~~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      .++..+.........|+|.|+||.|+.+.+.+.-      .|. +|++.|-.+
T Consensus       158 ~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka------~GA~~VVi~d~~~  204 (354)
T KOG0024|consen  158 GVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKA------MGASDVVITDLVA  204 (354)
T ss_pred             hhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHH------cCCCcEEEeecCH
Confidence            3344444444455689999999999999887766      565 788887664

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=95.33  E-value=0.032  Score=40.32  Aligned_cols=33  Identities=15%  Similarity=0.288  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +|.|||.|..|...|..|++      .|.+|+++++.+.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~------~G~~V~v~d~~~~   35 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLK------QGHQLQVFDVNPQ   35 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHH------CCCeEEEEcCCHH
Confidence            59999999999999999999      8999999998753

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=95.33  E-value=0.025  Score=43.57  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|||+|.+|+-+|..|++      .+.+|+++.|..
T Consensus       205 k~VvVVG~G~Sg~diA~~L~~------~a~~V~l~~r~~  237 (461)
T PLN02172        205 EVVVVIGNFASGADISRDIAK------VAKEVHIASRAS  237 (461)
T ss_pred             CEEEEECCCcCHHHHHHHHHH------hCCeEEEEEeec
Confidence            479999999999999999999      678999998864

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=95.31  E-value=0.045  Score=39.79  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      .|.|||+|-.|.++|+.|..      .++  ++.|+|...
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~------~~~~~elvL~Di~~   34 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALA------LGLFSEIVLIDVNE   34 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHh------cCCCCEEEEEeCCc
Confidence            48999999999999999988      555  799999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.31  E-value=0.038  Score=42.31  Aligned_cols=33  Identities=15%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .++|+|.|.+|+++|..|++      .|.+|++.|..+.
T Consensus         7 ~~~v~G~g~~G~~~a~~l~~------~g~~v~~~d~~~~   39 (445)
T PRK04308          7 KILVAGLGGTGISMIAYLRK------NGAEVAAYDAELK   39 (445)
T ss_pred             EEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCCC
Confidence            59999999999999999999      8999999997653

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.31  E-value=0.04  Score=40.91  Aligned_cols=35  Identities=20%  Similarity=0.378  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ....|+|||.|-.|+.+|..|++      .|+ +++++|.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~------~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAG------AGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHH------cCCCeEEEEeCCE
Confidence            34689999999999999999999      786 899999875

>PLN02494 adenosylhomocysteinase

Probab=95.30  E-value=0.04  Score=42.16  Aligned_cols=35  Identities=26%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...++|+|.|..|..+|..+..      .|.+|+++|+++.
T Consensus       254 GKtVvViGyG~IGr~vA~~aka------~Ga~VIV~e~dp~  288 (477)
T PLN02494        254 GKVAVICGYGDVGKGCAAAMKA------AGARVIVTEIDPI  288 (477)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCch
Confidence            3479999999999999999977      7999999998864

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.29  E-value=0.029  Score=42.97  Aligned_cols=33  Identities=27%  Similarity=0.507  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|+|+|..|..+|..|.+      .|.+|+++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~------~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSG------ENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCcEEEEECCHH
Confidence            48999999999999999998      7999999998753

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.27  E-value=0.056  Score=31.81  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC---ceEEEE-ecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE---LKVCLV-EKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g---~~v~vl-E~~~~   62 (182)
                      .|.|||+|-.|.+++..|.+      .|   .+|.++ +|++.
T Consensus         1 kI~iIG~G~mg~al~~~l~~------~g~~~~~v~~~~~r~~~   37 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLA------SGIKPHEVIIVSSRSPE   37 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHH------TTS-GGEEEEEEESSHH
T ss_pred             CEEEECCCHHHHHHHHHHHH------CCCCceeEEeeccCcHH
Confidence            37899999999999999999      78   789866 77653

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.26  E-value=0.044  Score=39.49  Aligned_cols=32  Identities=19%  Similarity=0.368  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      .|+|||+|-.|+.+|..|++      .|. +++++|.+.
T Consensus         1 kVLIvGaGGLGs~vA~~La~------aGVg~ItlvD~D~   33 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLG------WGVRHITFVDSGK   33 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHH------cCCCeEEEECCCE
Confidence            48999999999999999999      786 799998775

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.26  E-value=0.044  Score=37.80  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ..|+|||||..++.=+..|.+      .|.+|+|+-..
T Consensus        26 ~~VLVVGGG~VA~RK~~~Ll~------~gA~VtVVap~   57 (223)
T PRK05562         26 IKVLIIGGGKAAFIKGKTFLK------KGCYVYILSKK   57 (223)
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCEEEEEcCC
Confidence            469999999999998889988      89999999543

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.22  E-value=0.12  Score=41.70  Aligned_cols=32  Identities=38%  Similarity=0.580  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .-+|||||.-|+-+|..|.+      .|.++.+++=.+
T Consensus       147 ~avVIGGGLLGlEaA~~L~~------~Gm~~~Vvh~~~  178 (793)
T COG1251         147 KAVVIGGGLLGLEAARGLKD------LGMEVTVVHIAP  178 (793)
T ss_pred             CcEEEccchhhhHHHHHHHh------CCCceEEEeecc
Confidence            46999999999999999999      899999997543

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.20  E-value=0.054  Score=36.53  Aligned_cols=33  Identities=36%  Similarity=0.651  Sum_probs=29.0

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|+|| |..|..++..|++      .|.+|+++.|..
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~------~g~~V~l~~R~~   62 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAR------EGARVVLVGRDL   62 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHH------CCCEEEEEcCCH
Confidence            46999997 9999999999998      788999998763

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.18  E-value=0.042  Score=40.58  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=27.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|.|||+|..|.+.|..|++      .| .++++.+++
T Consensus         8 mkI~IiGaGa~G~alA~~La~------~g-~v~l~~~~~   39 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICAR------RG-PTLQWVRSA   39 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHH------CC-CEEEEeCCH
Confidence            469999999999999999999      77 677776653

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.17  E-value=0.039  Score=41.94  Aligned_cols=33  Identities=36%  Similarity=0.371  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|||-|.+|.++|..|.+      .|.+|++.|+.+
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~------~G~~V~g~D~~~   36 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQ------KGVYVIGVDKSL   36 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHH------CCCEEEEEeCCc
Confidence            369999999999999999999      899999999764

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=95.14  E-value=0.053  Score=38.10  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=31.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +...++|+|+|..+..+|..+..      .|++|+++|-++.
T Consensus        99 p~~~L~IfGaG~va~~la~la~~------lGf~V~v~D~R~~  134 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAP------LPCRVTWVDSREA  134 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhc------CCCEEEEEeCCcc
Confidence            34689999999999999998888      8999999997654

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=95.14  E-value=0.051  Score=39.09  Aligned_cols=32  Identities=13%  Similarity=0.380  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      .|+|||+|..|+.++..|++      .|+ +++|+|-+.
T Consensus         1 kVlVVGaGGlG~eilknLal------~Gvg~I~IvD~D~   33 (291)
T cd01488           1 KILVIGAGGLGCELLKNLAL------SGFRNIHVIDMDT   33 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHH------cCCCeEEEECCCE
Confidence            48999999999999999999      776 789998774

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.12  E-value=0.034  Score=43.92  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +-.++|+|.|..|-.+|..|.+      +|.+++++|+++.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~------~g~~vvvId~d~~  451 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLA------AGIPLVVIETSRT  451 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHH------CCCCEEEEECCHH
Confidence            3579999999999999999998      8999999999864

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.12  E-value=0.049  Score=38.82  Aligned_cols=33  Identities=27%  Similarity=0.470  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|+|+|.+|.+++..|++      .|.+|++++|..
T Consensus       118 k~vliiGaGg~g~aia~~L~~------~g~~v~v~~R~~  150 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLK------ADCNVIIANRTV  150 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHH------CCCEEEEEeCCH
Confidence            469999999999999999998      788999998864

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
2gmh_A	584	Structure Of Porcine Electron Transfer Flavoprotein		2e-68

>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein- Ubiquinone Oxidoreductase In Complexed With Ubiquinone Length = 584

Iteration: 1
 Score =  254 bits (648), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 119/169 (70%), Positives = 141/169 (83%)
Query: 14  VDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
           V+MERF + ADVVIVG GPAG++AA RLKQLA +  K+L+VCLVEKAA +G H LSGA +
Sbjct: 27  VNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACL 86
Query: 74  DPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHV 133
           DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGNYVVRLGH+
Sbjct: 87  DPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHL 146
Query: 134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI KDG+PK
Sbjct: 147 VSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	1e-102
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	3e-29
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	1e-15
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	1e-14
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-14
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	5e-14
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	9e-14
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	2e-12
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	2e-10
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	2e-10
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	3e-10
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	4e-10
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	8e-10
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	9e-10
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	1e-09
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	9e-09
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	1e-08
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	3e-08
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	5e-08
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	7e-08
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	9e-08
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	9e-08
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	2e-07
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	2e-07
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	2e-07
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	2e-07
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	3e-07
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	4e-07
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	6e-07
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	6e-07
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	8e-07
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	9e-07
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	1e-06
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	1e-06
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	1e-06
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	1e-06
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	1e-06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	2e-06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	2e-06
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	2e-06
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	2e-06
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	2e-06
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	2e-06
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	2e-06
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	3e-06
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	3e-06
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	3e-06
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	3e-06
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	3e-06
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	3e-06
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	4e-06
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	4e-06
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	4e-06
1ojt_A	482	Surface protein; redox-active center, glycolysis,	6e-06
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	6e-06
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	6e-06
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	6e-06
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	6e-06
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	7e-06
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	8e-06
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	9e-06
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	1e-05
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	1e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	1e-05
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	1e-05
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	1e-05
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	2e-05
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	2e-05
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	2e-05
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	2e-05
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	3e-05
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	3e-05
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	4e-05
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	5e-05
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	5e-05
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	5e-05
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	5e-05
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	6e-05
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	6e-05
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	7e-05
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	7e-05
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	7e-05
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	8e-05
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	8e-05
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	8e-05
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	1e-04
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	1e-04
4fk1_A	304	Putative thioredoxin reductase; structural genomic	2e-04
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-04
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	2e-04
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	3e-04
3dme_A	369	Conserved exported protein; structural genomics, P	3e-04
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	3e-04
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	3e-04
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	3e-04
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	4e-04
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	4e-04
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	4e-04
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	4e-04
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	5e-04
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	5e-04
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	5e-04
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	5e-04
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	6e-04
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	7e-04
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	7e-04
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	7e-04
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	8e-04
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	8e-04

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584

 Score =  305 bits (782), Expect = e-102
 Identities = 119/170 (70%), Positives = 141/170 (82%)

Query: 13  DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
            V+MERF + ADVVIVG GPAG++AA RLKQLA +  K+L+VCLVEKAA +G H LSGA 
Sbjct: 26  GVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGAC 85

Query: 73  IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 132
           +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGNYVVRLGH
Sbjct: 86  LDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGH 145

Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           +V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI KDG+PK
Sbjct: 146 LVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 195

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score =  109 bits (273), Expect = 3e-29
 Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 15/171 (8%)

Query: 16  MERFEDVA--DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
               +  A  D+VIVG G  G++AA  L  L      +L++ +VE     GG    G  +
Sbjct: 71  FADLDAHAETDIVIVGAGSCGLSAAYVLSTLR----PDLRITIVEAGVAPGGGAWLGGQL 126

Query: 74  DP--IALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLG 131
               +          ++G P      E  +  +  +      +L  + +      +    
Sbjct: 127 FSAMVMRKPADVFLDEVGVPYED---EGDYVVVKHAALFTSTVLSKV-LQRPNVKLFNAT 182

Query: 132 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
            V   +  +  A            E        + G+ T    ++     +
Sbjct: 183 TVEDLITRKHHAESSSSSDD---GEAEDEAKVRIAGVVTNWTLVSMHHDDQ 230

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 69.4 bits (169), Expect = 1e-14
 Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 29/181 (16%)

Query: 16  MERFEDVA--DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG------HI 67
            +  +  A  DV+IVG G +G++AA  +     K+  +LKVC++E +   GG       +
Sbjct: 57  FKDLDKFAVSDVIIVGAGSSGLSAAYVIA----KNRPDLKVCIIESSVAPGGGSWLGGQL 112

Query: 68  LSGAVIDPIA---LNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRI---GIPILPGM--- 118
            S  V+   A   L EL   ++D G  +    H   F     SK +    + +       
Sbjct: 113 FSAMVMRKPAHLFLQELEIPYEDEGDYVVV-KHAALFISTVLSKVLQLPNVKLFNATCVE 171

Query: 119 -----PMNNHGNYVVRLGHVVKW-LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 172
                P    G   V  G V  W L  QA      + P +       +          G 
Sbjct: 172 DLVTRPPTEKGEVTVA-GVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGV 230

Query: 173 V 173
           +
Sbjct: 231 I 231

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 18/156 (11%)

Query: 20  EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG-GHILSGAVIDPIAL 78
           E   DV+I+GGG AG +AA +   L+ +    LK+ LV+       G    G  +     
Sbjct: 4   ELKYDVLIIGGGFAGSSAAYQ---LSRRG---LKILLVDSKPWNRIGDKPCGDAVSKAHF 57

Query: 79  NELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLG 138
           ++L   +   G  L   ++  K  Y    + +      G        + +      + + 
Sbjct: 58  DKLGMPYPK-GEELENKINGIKL-YSPDMQTVWTVNGEG--------FELNAPLYNQRVL 107

Query: 139 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG 174
           ++A+  GVEI+    A + ++  DG VKG    +  
Sbjct: 108 KEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRR 142

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 68.0 bits (166), Expect = 5e-14
 Identities = 34/163 (20%), Positives = 57/163 (34%), Gaps = 13/163 (7%)

Query: 16  MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE----VGGHILSGA 71
           M    +V D++++GGGP G   A  +       G   +V L+E+ A     +G  +L   
Sbjct: 1   MSTRPEVFDLIVIGGGPGGSTLASFVAMR----G--HRVLLLEREAFPRHQIGESLLPAT 54

Query: 72  VIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLG 131
           V    A+  L  + K  G P         F +  + +                 Y V   
Sbjct: 55  VHGICAMLGLTDEMKRAGFP---IKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERA 111

Query: 132 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVG 174
                L   +E  GV++       +VL+ G+ +V        G
Sbjct: 112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEG 154

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 66.6 bits (162), Expect = 9e-14
 Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 41/172 (23%)

Query: 16  MERFEDVA--DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
           M      A  DVV+VG G AG++AA     +++     ++V ++E++   GG    G  +
Sbjct: 31  MTDMITYAETDVVVVGAGSAGLSAAYE---ISKNPN--VQVAIIEQSVSPGGGAWLGGQL 85

Query: 74  DP--IALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLG 131
               I          ++                            G+  +    YVV   
Sbjct: 86  FSAMIVRKPAHLFLDEI----------------------------GVAYDEQDTYVVVKH 117

Query: 132 HVV---KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGS 180
             +     + +      V+++  + A +++      V G+ T    +A++  
Sbjct: 118 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHH 168

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 18/158 (11%)

Query: 20  EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE----VGGHILSGAVIDP 75
            +  DV+++G GPAG  AA  + +         KV +VEK       +G  +L   +   
Sbjct: 3   REKVDVLVIGAGPAGTVAASLVNK------SGFKVKIVEKQKFPRFVIGESLLPRCM--- 53

Query: 76  IALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGN-YVVRLGHVV 134
               E L +   L A       +   A   + K I          N     + V  G+  
Sbjct: 54  ----EHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFD 109

Query: 135 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 172
           K L ++A   GV++   +  +++ + G  SV  I   +
Sbjct: 110 KTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDIN 147

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 22/164 (13%)

Query: 16  MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA---EVGGHILSGAV 72
           M R      V I+GGGPAG  A + L +L    G    V + E++A      G  L    
Sbjct: 21  MTRS----KVAIIGGGPAGSVAGLTLHKL----G--HDVTIYERSAFPRYRVGESLLPGT 70

Query: 73  IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPI----LPGMPMNNHGNYVV 128
           +  +    L                     +L    +             P        V
Sbjct: 71  MSILNRLGLQEKIDAQNYVKKP-----SATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQV 125

Query: 129 RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 172
           +     K L ++A + G+ ++   P ++V       V       
Sbjct: 126 KREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRG 169

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 15/91 (16%)

Query: 23  ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS----GAVID--PI 76
           + + I+G GPAG+AA + L+Q    D       ++E+   VGG   S    G   +   I
Sbjct: 7   SRIAIIGAGPAGLAAGMYLEQAGFHD-----YTILERTDHVGGKCHSPNYHGRRYEMGAI 61

Query: 77  ALN----ELLPDWKDLGAPLNTPVHEDKFAY 103
                   +       G  ++ P    +F +
Sbjct: 62  MGVPSYDTIQEIMDRTGDKVDGPKLRREFLH 92

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 57.4 bits (137), Expect = 3e-10
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 18  RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK---AAEVGGHILSGAVID 74
             E+  D+V++G G  G A A  L+QLA        + LVE+     E G  IL+  V  
Sbjct: 32  FTEEAFDIVVIGAGRMGAACAFYLRQLA----PGRSLLLVEEGGLPNEEGATILAPGVWT 87

Query: 75  PIALNELLPDWKDLGAPLNTPVHED 99
              +       +         +   
Sbjct: 88  AQDIP---AGQEAQAEWTREQLLGA 109

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 41/193 (21%), Positives = 65/193 (33%), Gaps = 32/193 (16%)

Query: 2   LSFGSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
           +   + K+ Q        ++  DVVI+G G AG+AAA+  +      G   KV L+EK  
Sbjct: 106 VPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDA----G--AKVILLEKEP 159

Query: 62  EVGGH-ILSG----AVIDPIALNELLPDWKDL--------GAPLNTPVHEDKFAYLTKS- 107
             GG+  L+     A          + D K +        G  +N P      A  +   
Sbjct: 160 IPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDS 219

Query: 108 ----KRIGIPILPGMPMNNH-------GNYVVRLGH-VVKWLGEQAEAMGVEIYPGIPAS 155
                 +G  +     M                +G  V + L + A   G +I       
Sbjct: 220 IDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVV 279

Query: 156 EVLYHGDGSVKGI 168
            +L    G V G+
Sbjct: 280 RILEDASGKVTGV 292

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 40/180 (22%)

Query: 19  FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH-ILSGAVIDPIA 77
             +   V++VG G AG  A++  K+     G    V LV+KA   GG+ ++S   +    
Sbjct: 118 PSETTQVLVVGAGSAGFNASLAAKKA----GA--NVILVDKAPFSGGNSMISAGGM-NAV 170

Query: 78  LNEL-------------LPDWKDLGAPLNTPVHEDKFAYLTKS-----KRIGIPILPGMP 119
             +              + D    G   N        A  +       + +G  +     
Sbjct: 171 GTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANL---DD 227

Query: 120 MNNHGNYVVRLGHV-----------VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI 168
           +   G   V   H            +  L + A+  G++        +++ + D SV G 
Sbjct: 228 LKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGA 287

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 55.8 bits (135), Expect = 9e-10
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 15 DMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH-ILSGAVI 73
           +  ++  ADVV+ G G AG+AA+I     A + G    V ++E+ +  GG   L+G  I
Sbjct: 34 TVTEWDYEADVVVAGYGIAGVAASIE----AARAG--ADVLVLERTSGWGGATALAGGFI 87

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 44/195 (22%), Positives = 68/195 (34%), Gaps = 38/195 (19%)

Query: 3   SFGSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62
                KS++         D  DVV+VG G AG +AAI         G   KV L+EK   
Sbjct: 107 ELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDS----G--AKVILIEKEPV 160

Query: 63  VGGH-ILSG----AVIDPIALNELLPDWKDL--------GAPLNTPVHEDKFAYLTKS-- 107
           +GG+  L+     A        + + D  +L        G  +N          L+    
Sbjct: 161 IGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN---DPALVKVLSSHSK 217

Query: 108 ------KRIGIP-----ILPGM--PMNNHGNYVVRLGH-VVKWLGEQAEAMGVEIYPGIP 153
                   +G       ++ G      +       +G  VV+ L + A    +++     
Sbjct: 218 DSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTR 277

Query: 154 ASEVLYHGDGSVKGI 168
             EVL    G+VKGI
Sbjct: 278 GIEVLKDDKGTVKGI 292

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 53.0 bits (127), Expect = 9e-09
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS----GAVID 74
           VVI+GGG  G+AAA  +++  ++    L++ LVE +  VGG I +    G +I+
Sbjct: 7  HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIE 61

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 52.2 bits (124), Expect = 1e-08
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
          M   +   DV+++G GP G+ AA RL Q+           +V+     GG  
Sbjct: 4  MTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPS-----WMIVDSNETPGGLA 50

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 14/145 (9%)

Query: 20  EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79
             V D++ VG GP+ +A AI L++ A+  G  L+V  ++K  +   H     ++    L 
Sbjct: 28  AVVHDLIGVGFGPSNIALAIALQERAQAQG-ALEVLFLDKQGDYRWH--GNTLVSQSELQ 84

Query: 80  ELLPDWKDLGAPLNTPVHEDKF-AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLG 138
             +   KDL   L  P     F  YL K  R+           N G +         +L 
Sbjct: 85  --ISFLKDL-VSLRNPTSPYSFVNYLHKHDRLV-------DFINLGTFYPCRMEFNDYLR 134

Query: 139 EQAEAMGVEIYPGIPASEVLYHGDG 163
             A     +   G     +      
Sbjct: 135 WVASHFQEQSRYGEEVLRIEPMLSA 159

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 50.6 bits (122), Expect = 5e-08
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DV++VG G +G+ A  RL++L    G    V ++E A +VGG
Sbjct: 18 DVLVVGAGFSGLYALYRLREL----G--RSVHVIETAGDVGG 53

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 50.3 bits (121), Expect = 7e-08
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          D V++G G  G+  A  + Q     G  +KV  +E   +VGG
Sbjct: 11 DAVVIGAGVTGIYQAFLINQA----G--MKVLGIEAGEDVGG 46

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 49.9 bits (120), Expect = 9e-08
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DVV+VG G AG+ A  R +      G  L V   E A+ VGG
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQ----G--LTVRAFEAASGVGG 58

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 50.1 bits (119), Expect = 9e-08
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID 74
           VV++GGG +G+AA+  L +         KV LVE +  +GG I S    +
Sbjct: 4  TVVVLGGGISGLAASYHLSRA----PCPPKVVLVESSERLGGWIRSVRGPN 50

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          D V++G G  G+ A  +L          L     +KA   GG
Sbjct: 10 DAVVIGAGFGGIYAVHKLHHEL-----GLTTVGFDKADGPGG 46

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
           +VI+G GP G+ AA+RL +L  K+       L E     GG  
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKN-----WHLYECNDTPGGLS 49

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Length = 662

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
           D+++VGGG     AA    + A+K   E K+ LV+KA+
Sbjct: 23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS 61

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
            V+VG G  G+ A   L     ++G   ++ ++EK+A +GG
Sbjct: 2  RAVVVGAGLGGLLAGAFLA----RNGH--EIIVLEKSAMIGG 37

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 48.2 bits (114), Expect = 3e-07
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 18/107 (16%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS----GAVID----- 74
            V ++G G +G+AAA +LK         L V + E   + GG + S    G + D     
Sbjct: 15  RVAVIGAGVSGLAAAYKLKI------HGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANT 68

Query: 75  -PIALNELLPDWKDLGAP--LNTPVHEDKFAYLTKSKRIGIPILPGM 118
              +  ++      LG       P+ ++K         + +P  P  
Sbjct: 69  MTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPID 115

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DV I+G G AGM A    K+         KV L+E  A  G 
Sbjct: 10 DVAIIGTGTAGMGAYRAAKKHT------DKVVLIEGGA-YGT 44

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 47.5 bits (114), Expect = 6e-07
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 7/48 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG 70
          DV+++GGGP+G+ AAI   +      +   V L++K  ++G  +  SG
Sbjct: 28 DVIVIGGGPSGLMAAIGAAE------EGANVLLLDKGNKLGRKLAISG 69

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 46/151 (30%)

Query: 16  MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDP 75
           M+      DVV++GGG +G++A   L++        L   +++  A  GG          
Sbjct: 1   MDSV----DVVVIGGGQSGLSAGYFLRRSG------LSYVILDAEASPGGA--------- 41

Query: 76  IALNELLPDWKDL--GAPLNTPVHEDKFAYLTKSKRIGIPILPGMPM-NNHGNYVVRLGH 132
                    W+       L +P                   +PG PM  + G Y  R   
Sbjct: 42  ---------WQHAWHSLHLFSPAGWSS--------------IPGWPMPASQGPYPAR-AE 77

Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDG 163
           V+ +L +  +   + +   I    V + G+ 
Sbjct: 78  VLAYLAQYEQKYALPVLRPIRVQRVSHFGER 108

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 46.9 bits (111), Expect = 8e-07
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS----GAVID 74
           +VIVGGG  G+AAA   ++       +L + L+E    +GG + +    G  I+
Sbjct: 6  RLVIVGGGITGLAAAYYAERA----FPDLNITLLEAGERLGGKVATYREDGFTIE 56

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 46.8 bits (111), Expect = 9e-07
 Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 30/156 (19%)

Query: 13  DVDMERFEDVA-----------DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA 61
           + D E F ++A            VVIVG G AG++AA  L       G   +V ++E + 
Sbjct: 13  ENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGA----G--HQVTVLEASE 66

Query: 62  EVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMN 121
             GG + +         NE    + +LG       H     Y+   ++  + +      +
Sbjct: 67  RPGGRVRT-------YRNEEAGWYANLGPMRLPEKHRIVREYI---RKFDLRL---NEFS 113

Query: 122 NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEV 157
              +        ++    + +     +   +  SE 
Sbjct: 114 QENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEA 149

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 46.7 bits (110), Expect = 1e-06
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
          D +IVG G AG   A RL       G+  +V +V++   +GG+ 
Sbjct: 31 DYLIVGAGFAGSVLAERLA----SSGQ--RVLIVDRRPHIGGNA 68

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG 70
          + +I+G G AG+  A +L +          V + +   ++G  IL SG
Sbjct: 6  ENIIIGAGAAGLFCAAQLAK------LGKSVTVFDNGKKIGRKILMSG 47

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
          D+ +VG G  G+  A   +++A +  K  +V ++E+   +GG+ 
Sbjct: 9  DLFVVGSGFFGLTIA---ERVATQLDK--RVLVLERRPHIGGNA 47

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 11/56 (19%)

Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG 70
           E+     DVVI+G G AGM  AI   +      +  +V +++ A   G  I  SG
Sbjct: 25 AEKQ----DVVIIGAGAAGMMCAIEAGK------RGRRVLVIDHARAPGEKIRISG 70

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 25  VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
           V++VG GP+G+ AA     L  + G    V L E   ++GG +   + +
Sbjct: 394 VLVVGAGPSGLEAAR---ALGVR-G--YDVVLAEAGRDLGGRVTQESAL 436

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 17/117 (14%)

Query: 22  VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL 81
           + D ++VGGG +G+ AA  L           KV L+E    +GG   S           +
Sbjct: 1   MYDAIVVGGGFSGLKAARDLTN------AGKKVLLLEGGERLGGRAYSR------ESRNV 48

Query: 82  LPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLG 138
                ++G       H  + A      R GIP       +   ++  RLG       
Sbjct: 49  PGLRVEIGGAYLHRKHHPRLAAE--LDRYGIPTA---AASEFTSFRHRLGPTAVDQA 100

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 25  VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
           V+IVG GP+G  AA     L E  G    V L + A ++GGH+   A +
Sbjct: 392 VLIVGAGPSGSEAAR---VLMES-G--YTVHLTDTAEKIGGHLNQVAAL 434

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* Length = 643

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
          D++I+GGG +G  AA      A+  G  LKV LVEKA
Sbjct: 24 DILIIGGGFSGCGAAYEAAYWAKLGG--LKVTLVEKA 58

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 6/46 (13%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
           DV++VG GPAG+AAA      A + G   +V L+++ AE GG +L 
Sbjct: 130 DVLVVGAGPAGLAAAR----EASRSG--ARVMLLDERAEAGGTLLD 169

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
          D +IVG G  G   A  LK+L     K  KV ++EK   +GG+ 
Sbjct: 3  DYIIVGSGLFGAVCANELKKL----NK--KVLVIEKRNHIGGNA 40

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 6/40 (15%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62
           DV+I G G  G   A  L +         +V +VE+A  
Sbjct: 7  IDVLINGCGIGGAMLAYLLGRQ------GHRVVVVEQARR 40

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 17/138 (12%)

Query: 23  ADVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAEVGGHILSGAVIDPIA--- 77
             + IVGGG  G+AA   L +LA        + V + E   +   H   G     +    
Sbjct: 57  YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLK 116

Query: 78  --------LNELLPDWK----DLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGN 125
                   ++   P       ++GA     +    + Y + +     PI           
Sbjct: 117 AGRVSAALVHNGDPASGDTIYEVGAMRFPEIAGLTWHYASAAFGDAAPIKVFPNPGKVPT 176

Query: 126 YVVRLGHVVKWLGEQAEA 143
             V    V +++G   + 
Sbjct: 177 EFVFGNRVDRYVGSDPKD 194

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DVVI+GGGPAG  AAI+  QL            VEK  ++GG
Sbjct: 7  DVVIIGGGPAGYVAAIKAAQLG------FNTACVEKRGKLGG 42

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          D++++G GP G  AAIR  QL       +KV +VEK   +GG
Sbjct: 3  DLLVIGAGPGGYVAAIRAAQLG------MKVGVVEKEKALGG 38

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 493

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 7/46 (15%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
           DV I+GGGPAG+ AA+ L        + L V L+E+   +GG +  
Sbjct: 110 DVAIIGGGPAGIGAALEL-------QQYLTVALIEERGWLGGDMWL 148

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          D++++G GP G   AI+  QL       +KV +VEK +  GG
Sbjct: 27 DLIVIGSGPGGYVCAIKAAQLG------MKVAVVEKRSTYGG 62

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 10/50 (20%)

Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          M+       V I+G G AG+  AI LK     D       ++ +   VG 
Sbjct: 2  MQHH----KVAIIGAGAAGIGMAITLKDFGITD------VIILEKGTVGH 41

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DVVI+GGGP G  AAI+  QL        K   +EK   +GG
Sbjct: 8  DVVIIGGGPGGYVAAIKAAQLG------FKTTCIEKRGALGG 43

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DVV++GGGP G  A+I+  QL       +K   VEK   +GG
Sbjct: 4  DVVVIGGGPGGYVASIKAAQLG------MKTACVEKRGALGG 39

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 10/55 (18%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS----GAVID 74
          +V +VGGG +G+A A  L+             L+E +A +GG + +    G +++
Sbjct: 18 NVAVVGGGISGLAVAHHLRSRG------TDAVLLESSARLGGAVGTHALAGYLVE 66

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DVV++G G AG   A RL +          V + +   E+GG
Sbjct: 6  DVVVIGAGGAGYHGAFRLAKAK------YNVLMADPKGELGG 41

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 44.4 bits (106), Expect = 6e-06
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
           +   DVV++GGGP G +AA             LKV +VE+   +GG
Sbjct: 3  ADAEYDVVVLGGGPGGYSAAFAAADEG------LKVAIVERYKTLGG 43

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 44.7 bits (105), Expect = 6e-06
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 10/54 (18%)

Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
          M+       ++IVG G +G     +L     + G   +V ++++   +GG+   
Sbjct: 1  MKSK----KILIVGAGFSGAVIGRQLA----EKGH--QVHIIDQRDHIGGNSYD 44

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          M     V D+ I+GGGP G+  A            +  V ++E   ++GG
Sbjct: 1  MREDTKVYDITIIGGGPVGLFTAFYGGMR------QASVKIIESLPQLGG 44

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 44.4 bits (106), Expect = 6e-06
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          ADV ++G GP G  AAI+  QL        K   +EK   +GG
Sbjct: 7  ADVTVIGSGPGGYVAAIKAAQLG------FKTVCIEKNETLGG 43

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          D + +GGG AG   +  L+ +        +  +V++   +GG
Sbjct: 45 DAIFIGGGAAGRFGSAYLRAMG------GRQLIVDRWPFLGG 80

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 44.4 bits (106), Expect = 7e-06
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          E    V ++G G A MAAA++  +         +V L+E+   +GG
Sbjct: 2  EPPVQVAVIGSGGAAMAAALKAVEQG------AQVTLIERGT-IGG 40

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62
              DV+IVG GPAG+  A +L         +++ C+VE+   
Sbjct: 30 PSQVDVLIVGCGPAGLTLAAQLAAFP-----DIRTCIVEQKEG 67

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score = 44.3 bits (104), Expect = 9e-06
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE 62
          E   DV+IVG GPAG+ AA  L +   +   +LKV +++K + 
Sbjct: 6  ESYCDVLIVGAGPAGLMAARVLSEYVRQKP-DLKVRIIDKRST 47

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 25  VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPD 84
           ++++G GPAG+  A +LKQ          + +VEK  E    +  G V+           
Sbjct: 3   ILVIGAGPAGLVFASQLKQA----RPLWAIDIVEKNDE-QEVLGWGVVLPGRPGQHPANP 57

Query: 85  WKDLGAPL-NTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA 143
              L AP    P   + F  +  ++         +         V    +V  L ++  +
Sbjct: 58  LSYLDAPERLNPQFLEDFKLVHHNEPS-------LMSTGVLLCGVERRGLVHALRDKCRS 110

Query: 144 MGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 179
            G+ I    P        +     +A  D+ +  +G
Sbjct: 111 QGIAIRFESPLL------EHGELPLADYDLVVLANG 140

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
            V++G G  G+ +A RL     K G   +V + E+    GG
Sbjct: 2  KTVVIGAGLGGLLSAARLS----KAGH--EVEVFERLPITGG 37

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 13/82 (15%)

Query: 25  VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPD 84
           + +VG GPAG+A AI     A + G +  V L +  +E+GG       I           
Sbjct: 376 LAVVGAGPAGLAFAI---NAAAR-GHQ--VTLFDAHSEIGGQFNIAKQIPGKEEFYETLR 429

Query: 85  W-----KDLGAP--LNTPVHED 99
           +     +  G    LN  V  D
Sbjct: 430 YYRRMIEVTGVTLKLNHTVTAD 451

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 14/121 (11%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
            V++VG G +G++AA RL +    D     + ++E    +GG +                
Sbjct: 6   RVIVVGAGMSGISAAKRLSEAGITD-----LLILEATDHIGGRMHK---------TNFAG 51

Query: 84  DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA 143
              +LGA     V+  K   +       + +       ++    V       +  +  + 
Sbjct: 52  INVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQK 111

Query: 144 M 144
            
Sbjct: 112 R 112

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 10/114 (8%)

Query: 21  DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNE 80
                V++G G     +A+R   L E     ++  ++E     G           I    
Sbjct: 4   GYVPAVVIGTGYGAAVSALR---LGEAG---VQTLMLEM----GQLWNQPGPDGNIFCGM 53

Query: 81  LLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVV 134
           L PD +       T      F +L    R   P    +   N+    V +G  V
Sbjct: 54  LNPDKRSSWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGV 107

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 14/58 (24%)

Query: 20  EDVADVVIVGGGPAGMAAAI---RLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID 74
            D  DV+IVG GPAG AAA+   R         K ++  L+ +    GG +L    I+
Sbjct: 210 RDAYDVLIVGSGPAGAAAAVYSAR---------KGIRTGLMGE--RFGGQVLDTVDIE 256

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 11/51 (21%)

Query: 15 DMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
           M+ +    D++++G GP G  AAIR  QL       LKV  VE    VGG
Sbjct: 3  PMKTY----DLIVIGTGPGGYHAAIRAAQLG------LKVLAVEAGE-VGG 42

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
           +VI+GGGPAG  AA+          +  +V +++    +GG
Sbjct: 4  RIVILGGGPAGYEAALVAATSH---PETTQVTVIDCDG-IGG 41

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 19/120 (15%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
           DV IVG GP+G+AAA  L++     G  L V ++E    VGG   +         + +  
Sbjct: 7   DVAIVGAGPSGLAAATALRKA----G--LSVAVIEARDRVGGRTWT---------DTIDG 51

Query: 84  DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA 143
              ++G      V  D+ A ++    +G+             Y+   G   ++ G+    
Sbjct: 52  AVLEIGGQW---VSPDQTALISLLDELGLKTFE-RYREGESVYISSAGERTRYTGDSFPT 107

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 11/50 (22%)

Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          M  +    DVV++G GP G  AAIR  QL       L   +VE     GG
Sbjct: 1  MTHY----DVVVLGAGPGGYVAAIRAAQLG------LSTAIVEPKY-WGG 39

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 6/46 (13%)

Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
           D+ D+ I+GGGP G+ AA +           +   ++E   ++GG
Sbjct: 12 HDMRDLTIIGGGPTGIFAAFQCGMN------NISCRIIESMPQLGG 51

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 7/43 (16%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
           + ++VG GP G  AAIR  QL        KV +VEK   +GG
Sbjct: 4  TETLVVGAGPGGYVAAIRAAQLG------QKVTIVEKGN-LGG 39

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 42.1 bits (98), Expect = 5e-05
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-----GAVID 74
            V+I+G G AG+ AA  L Q   +D       ++E    VGG + +     G   D
Sbjct: 9  KKVIIIGAGIAGLKAASTLHQNGIQD-----CLVLEARDRVGGRLQTVTGYQGRKYD 60

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
           DV+I+GGGP GMA A+ L          +   +VE+      H
Sbjct: 27 TDVLILGGGPVGMALALDLAHR----Q--VGHLVVEQTDGTITH 64

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 42.2 bits (98), Expect = 5e-05
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 20/123 (16%)

Query: 23  ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-----------GA 71
             V+I+G G +G+AAA +L+         + V L+E    VGG + +             
Sbjct: 108 GKVIIIGSGVSGLAAARQLQSFG------MDVTLLEARDRVGGRVATFRKGNYVADLGAM 161

Query: 72  VIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRI--GIPILPGMPMNNHGNYVVR 129
           V+  +  N +    K +   L   + +    Y    + +      +     N        
Sbjct: 162 VVTGLGGNPMAVVSKQVNMEL-AKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSY 220

Query: 130 LGH 132
           L H
Sbjct: 221 LSH 223

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 14/68 (20%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELL 82
           DVV+VGGG +GMAAA  L          L V ++E    VGG   +             
Sbjct: 5  CDVVVVGGGISGMAAAKLLHD------SGLNVVVLEARDRVGGRTYTLRNQK-------- 50

Query: 83 PDWKDLGA 90
            + DLG 
Sbjct: 51 VKYVDLGG 58

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 41.3 bits (98), Expect = 6e-05
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 7/42 (16%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
           ++I+GGGP G  AAIR  QL       +   LVE  A +GG
Sbjct: 7  TLLIIGGGPGGYVAAIRAGQLG------IPTVLVEGQA-LGG 41

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
           DVV+VGGGP G+  A  L+      G  +   ++EK  E  GH
Sbjct: 50 TDVVVVGGGPVGLMLAGELRAG----G--VGALVLEKLVEPVGH 87

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 13/59 (22%)

Query: 13 DVDMERFEDVADVVIVGGGPAGMAAAI---RLKQLAEKDGKELKVCLVEKAAEVGGHIL 68
           V  E  E   DVVIVG G AG +AA+   R             V +++KA   GG   
Sbjct: 7  AVSSEEKERDFDVVIVGAGAAGFSAAVYAAR---------SGFSVAILDKAV-AGGLTA 55

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
          A V++VG GPAGM  A  L+      G  ++V ++E+  E  G 
Sbjct: 12 AAVIVVGAGPAGMMLAGELRLA----G--VEVVVLERLVERTGE 49

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
          A V++VG GPAG+  A  L+      G  + V ++E+  +  G 
Sbjct: 13 ASVIVVGAGPAGLMLAGELRLG----G--VDVMVLEQLPQRTGE 50

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
           DV++VG G  G++ A+ L +     G  ++V +VE+   +  +
Sbjct: 6  VDVLVVGAGLGGLSTAMFLARQ----G--VRVLVVERRPGLSPY 43

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 41.3 bits (98), Expect = 8e-05
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DV+++G GP G  AAI+  QL       LK  L+EK     G
Sbjct: 5  DVIVIGAGPGGYVAAIKSAQLG------LKTALIEKYKGKEG 40

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 41.1 bits (95), Expect = 8e-05
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 18/99 (18%)

Query: 23  ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-----------GA 71
             V+I+G G +G+AAA +L+         + V L+E    VGG + +             
Sbjct: 279 GKVIIIGSGVSGLAAARQLQSFG------MDVTLLEARDRVGGRVATFRKGNYVADLGAM 332

Query: 72  VIDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRI 110
           V+  +  N +    K +   L   + +    Y    + +
Sbjct: 333 VVTGLGGNPMAVVSKQVNMEL-AKIKQKCPLYEANGQAV 370

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
           D V+VG G  G+AAA  LK  +        V +V+     G  
Sbjct: 24 FDYVVVGAGVVGLAAAYYLKVWSGGS-----VLVVDAGHAPGSG 62

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 6/36 (16%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
          D  ++G GPAG+ A++    L        ++ L + 
Sbjct: 8  DCAVIGAGPAGLNASL---VLG---RARKQIALFDN 37

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
           D  DV+IVG GP G+ A   +          L    V+   E GG
Sbjct: 3  ADHTDVLIVGAGPTGLFAGFYVGMR------GLSFRFVDPLPEPGG 42

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 14/45 (31%)

Query: 24 DVVIVGGGPAGMAAAI---RLKQLAEKDGKELKVCLVEKAAEVGG 65
          DV+IVG GPAG AAAI   R         K ++  L+ +    GG
Sbjct: 3  DVLIVGSGPAGAAAAIYSAR---------KGIRTGLMGE--RFGG 36

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 7/42 (16%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          D++++GGG  GMAAA R  +         KV LVEK + +GG
Sbjct: 4  DLIVIGGGSGGMAAARRAARH----NA--KVALVEK-SRLGG 38

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGA 71
          D +++G G  G+A A   + LA       +V + E A  +G    S  
Sbjct: 6  DCIVIGAGVVGLAIA---RALAAGG---HEVLVAEAAEGIGTGT-SSR 46

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 6/36 (16%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
          DV+I+GG  AG++AA+   QL         + LV+ 
Sbjct: 4  DVIIIGGSYAGLSAAL---QLG---RARKNILLVDA 33

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* Length = 538

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 25 VVIVGGGPAG-MAAAIRLKQLAEKDGKELKVCLVEKA 60
          +VIVGGG AG MAA+     L     ++  + L+E A
Sbjct: 8  IVIVGGGTAGWMAASY----LVRALQQQANITLIESA 40

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
          AD +++G G AG +    L           +V ++E+ A+ G H
Sbjct: 10 ADYLVIGAGIAGASTGYWLSAHG-------RVVVLEREAQPGYH 46

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 15/85 (17%)

Query: 22  VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL 81
             DV+++GGG  G+ A   L           K  L+E    +GG   S           +
Sbjct: 39  PWDVIVIGGGYCGLTATRDLTV------AGFKTLLLEARDRIGGRSWSS---------NI 83

Query: 82  LPDWKDLGAPLNTPVHEDKFAYLTK 106
                ++G           +  +T+
Sbjct: 84  DGYPYEMGGTWVHWHQSHVWREITR 108

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Length = 180

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 10/16 (62%), Positives = 16/16 (100%)

Query: 24 DVVIVGGGPAGMAAAI 39
          DV++VGGGP+G++AA+
Sbjct: 3  DVIVVGGGPSGLSAAL 18

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
          +A V+IVG G  G   A  L++        L + + +KA + GG + +
Sbjct: 1  MAQVLIVGAGMTGSLCAALLRRQTSGP---LYLAVWDKADDSGGRMTT 45

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Length = 511

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 5/37 (13%)

Query: 25 VVIVGGGPAG-MAAAIRLKQLAEKDGKELKVCLVEKA 60
          VVIVGGG AG M A+     L       + V LVE  
Sbjct: 5  VVIVGGGTAGWMTASY----LKAAFDDRIDVTLVESG 37

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 6/107 (5%)

Query: 20  EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN 79
           +   DVVIVG GP G   A   ++L        KV + +      G  +     + +   
Sbjct: 44  DIKYDVVIVGSGPIGCTYA---RELVGAG---YKVAMFDIGEIDSGLKIGAHKKNTVEYQ 97

Query: 80  ELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNY 126
           + +  + ++       V       +  +            + N  N 
Sbjct: 98  KNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNP 144

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Length = 550

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 5/35 (14%)

Query: 25 VVIVGGGPAG-MAAAIRLKQLAEKDGKELKVCLVE 58
          ++IVGGG AG MAA+     L +       + L++
Sbjct: 28 ILIVGGGTAGWMAASY----LGKALQGTADITLLQ 58

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
           VV++GGGPAG+ +A  L++     G   KV ++E     GG + +
Sbjct: 13 SVVVLGGGPAGLCSAFELQKA----G--YKVTVLEARTRPGGRVWT 52

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} Length = 526

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 25 VVIVGGGPAG-MAAAIRLKQLAEKD-----GKELKVCLVEKAAEVGGHILSGAVIDPIAL 78
          ++IVGGG AG + A +   +            +L + L+E        +  G      + 
Sbjct: 10 IIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGVGEGTWPSMRST 69

Query: 79 NELLP 83
             + 
Sbjct: 70 LSKIG 74

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 28/150 (18%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGA---VIDPIALNE 80
            V I+G GP+G+     L +     G  +   ++E+      ++L      V++   + +
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKA----G--IDNVILERQTPD--YVLGRIRAGVLEQGMV-D 54

Query: 81  LLPDWKDLGAPLN---TPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLG--HVVK 135
           LL     +   +          + A+  + +RI +  L G         V   G   V +
Sbjct: 55  LL-REAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGK------TVTVYGQTEVTR 107

Query: 136 WLGEQAEAM-GVEIYPGIPASEVLYHGDGS 164
            L E  EA     +Y     +EV  H    
Sbjct: 108 DLMEAREACGATTVYQA---AEVRLHDLQG 134

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
          V+++GG    + AA  LK+L    G +  V ++ K+
Sbjct: 4  VLVLGGRFGALTAAYTLKRLV---GSKADVKVINKS 36

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
          VVI+G G  GM AA    ++ E  G   +V L+   
Sbjct: 7  VVILGAGTGGMPAA---YEMKEALGSGHEVTLISAN 39

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 20 EDVADVVIVGGGPAGMAAAI 39
           +  DV+IVG GPA   AA+
Sbjct: 13 GEKFDVIIVGLGPAAYGAAL 32

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* Length = 602

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
          M+ F+  AD+ IVG G AG+ AAI     A+      K+ L+ K
Sbjct: 1  MQTFQ--ADLAIVGAGGAGLRAAI---AAAQA-NPNAKIALISK 38

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
          VV+VGGG  G  AA  +K         ++V L+E  
Sbjct: 5  VVVVGGGTGGATAAKYIK----LADPSIEVTLIEPN 36

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.87
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.84
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.77
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.76
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.75
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.75
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.75
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.75
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.73
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.71
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.69
3dme_A	369	Conserved exported protein; structural genomics, P	99.69
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.69
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.67
3atr_A	453	Conserved archaeal protein; saturating double bond	99.67
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.67
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.66
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.65
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.65
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.65
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.65
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.64
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.64
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.64
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.64
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.64
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.63
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.63
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.63
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.62
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.62
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.61
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.61
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.61
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.61
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.61
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.6
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.6
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.6
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.59
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.59
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.58
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.58
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.57
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.57
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.56
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.56
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.56
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.56
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.55
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.55
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.54
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.54
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.54
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.54
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.54
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.53
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.53
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.52
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.52
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.52
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.52
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.51
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.51
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.51
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	99.49
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.49
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.49
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.48
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.47
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.47
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.46
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.46
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.46
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.46
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.46
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.45
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.45
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.44
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.43
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.43
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.43
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.43
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	99.42
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.42
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.41
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.41
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.4
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.4
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.4
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.38
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.36
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.35
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.34
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.34
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.34
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.34
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.34
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.33
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.32
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.32
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.31
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.28
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.27
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.26
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.26
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.26
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.25
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.25
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.24
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.21
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.21
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.19
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.19
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.19
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.19
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.18
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.18
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.18
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.18
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.17
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	99.17
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.17
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.17
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.17
4dna_A	463	Probable glutathione reductase; structural genomic	99.16
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.12
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.11
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.11
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.11
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.11
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.1
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	99.09
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.09
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.08
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.06
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.05
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.05
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.05
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.03
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.03
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	99.02
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.02
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.01
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.01
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.0
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.99
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.98
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.98
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.97
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.97
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.96
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.96
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.96
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.95
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.95
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.94
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.94
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.93
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.93
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.92
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.91
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.9
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.9
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.9
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.89
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.89
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.88
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.88
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.88
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.87
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.85
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.84
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.84
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.84
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.83
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.83
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.83
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.82
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.79
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.78
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.77
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.74
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.71
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.71
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.68
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.66
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.65
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.64
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.63
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.63
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.63
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.63
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.62
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.61
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.59
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.57
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.54
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.53
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.51
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.51
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.5
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.49
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.47
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.46
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.45
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.44
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	98.42
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.42
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.42
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	98.42
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.41
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.41
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.41
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.4
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.4
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.4
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.39
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.37
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.37
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.37
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.36
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.36
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	98.34
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.34
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.34
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.33
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.33
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.32
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.32
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.29
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.28
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.28
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.28
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.28
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.28
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.26
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.25
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.25
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.23
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.23
4dna_A	463	Probable glutathione reductase; structural genomic	98.23
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.22
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.22
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	98.2
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.19
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.18
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.14
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.11
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.1
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.1
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.09
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.08
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.05
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.03
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.02
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.97
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.97
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.9
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.89
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.88
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.87
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.84
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.83
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.83
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.78
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.78
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.69
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.68
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.67
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.66
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.57
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.57
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.53
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.49
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	97.41
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.4
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.39
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.38
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.37
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.3
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.28
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.23
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.19
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.16
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.13
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.02
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.02
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.96
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.89
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.89
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.86
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.84
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.84
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.81
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.81
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.79
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.77
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.76
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.76
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.76
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.75
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.73
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.72
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.71
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.7
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.7
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.69
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.68
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.68
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.66
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.65
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.64
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.62
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.62
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.62
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.62
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.62
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	96.61
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.6
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.6
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.59
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.57
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.55
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.55
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.55
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.54
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.53
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.51
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.47
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.47
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.45
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.44
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.44
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.43
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.42
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.41
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.39
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.38
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.38
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	96.38
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.38
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.37
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.37
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.33
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.31
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.31
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.3
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.27
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.25
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.25
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.24
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.24
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.22
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.21
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.2
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.19
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.19
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.18
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.15
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.14
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.13
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.12
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	96.11
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.11
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.1
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.08
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.08
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.06
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.06
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.05
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.05
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.01
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.01
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.01
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	96.01
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.0
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.0
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	95.99
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.98
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	95.97
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.95
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	95.95
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.93
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.92
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.9
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.89
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	95.89
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.87
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	95.87
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.86
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	95.86
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	95.85
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.85
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	95.85
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	95.84
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.83
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.81
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.81
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	95.8
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	95.8
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.8
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.8
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	95.79
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.78
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	95.77
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.76
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.75
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.74
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	95.74
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.73
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.73
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.73
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	95.72
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.72
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	95.71
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.67
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.67
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.67
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	95.66
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	95.66
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	95.65
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.65
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.62
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.61
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.57
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.56
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	95.56
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.54
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.52
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	95.51
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	95.5
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.5
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	95.49
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.48
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.47
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.46
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.46
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.41
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.38
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.38
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	95.38
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	95.37
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	95.37
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.35
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.35
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.35
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.35
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	95.33
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	95.31
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.31
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.3
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.28
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.26
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.26
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	95.25
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	95.25
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.23
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.22
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.21
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.17
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	95.16
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	95.16
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	95.15
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.13
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	95.12
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.08
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.08
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.08
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	95.05
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	95.04
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	94.99
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.98
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.98
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	94.97
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	94.97
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	94.96
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	94.88
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	94.87
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	94.85
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	94.84
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	94.83
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.81
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	94.79
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	94.77
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	94.74
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	94.7
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	94.69
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	94.67
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	94.66
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.54
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	94.53
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	94.51
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	94.47
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	94.44

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.87  E-value=1.1e-21  Score=150.66  Aligned_cols=162  Identities=66%  Similarity=1.137  Sum_probs=109.8

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchh
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHE   98 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (182)
                      ..+++||+|||||++|+++|+.|++.+++.+.|++|+||||.+.+++...++..+.+..+..+++.|...+..+...+..
T Consensus        32 ~~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~  111 (584)
T 2gmh_A           32 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTE  111 (584)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCE
T ss_pred             cccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeech
Confidence            34568999999999999999999993222222999999999988776555666777777777777777655444322221


Q ss_pred             hhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE----------
Q psy2240          99 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI----------  168 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v----------  168 (182)
                      ..+.++.......++..+.......+.+.+++..+.++|.+.+++.|++|+++++|+++..++++.+.+|          
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~  191 (584)
T 2gmh_A          112 DRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKD  191 (584)
T ss_dssp             EEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTT
T ss_pred             hheeeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCC
Confidence            1111111111111111111011223467889999999999999999999999999999988666665544          


Q ss_pred             ------------EeCCEEEecCCC
Q psy2240         169 ------------ATGDVGIAKDGS  180 (182)
Q Consensus       169 ------------~~~~~vi~adG~  180 (182)
                                  ...++||.|||.
T Consensus       192 G~~~~~~~~g~~i~Ad~VV~AdG~  215 (584)
T 2gmh_A          192 GAPKTTFERGLELHAKVTIFAEGC  215 (584)
T ss_dssp             SCEEEEEECCCEEECSEEEECCCT
T ss_pred             CCcccccCCceEEECCEEEEeeCC
Confidence                        335789999997

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.84  E-value=5.3e-21  Score=140.46  Aligned_cols=149  Identities=28%  Similarity=0.361  Sum_probs=93.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      |.+|||+||||||+|+++|+.|++      +|++|+||||.+.++....+++.+.+..+.. ++.+... ......+...
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~------~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~-l~~~~~~-~~~~~~~~~~   73 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAK------YGLKTLMIEKRPEIGSPVRCGEGLSKGILNE-ADIKADR-SFIANEVKGA   73 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSTTCSCCSCCEEETHHHHH-TTCCCCT-TTEEEEESEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH------CCCcEEEEeCCCCCCCCCceecccCHHHHHH-cCCCchh-hhhhcccceE
Confidence            456999999999999999999999      8999999999987765545555554443322 2211000 0000111000


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE----------E
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI----------A  169 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v----------~  169 (182)
                      .  .+......... ..........++.++|..+.+.|.+.+.+.|++++++++|+++..++ +.+.++          .
T Consensus        74 ~--~~~~~~~~~~~-~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~-~~~~~v~~~~~~~~~~~  149 (397)
T 3oz2_A           74 R--IYGPSEKRPII-LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKEN-GKVAGAKIRHNNEIVDV  149 (397)
T ss_dssp             E--EECTTCSSCEE-EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEET-TEEEEEEEEETTEEEEE
T ss_pred             E--EEeCCCceEee-ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeecc-ceeeeeeecccccceEE
Confidence            0  00000000000 00011122336789999999999999999999999999999988744 444432          3


Q ss_pred             eCCEEEecCCC
Q psy2240         170 TGDVGIAKDGS  180 (182)
Q Consensus       170 ~~~~vi~adG~  180 (182)
                      ..++||+|||.
T Consensus       150 ~a~~vIgAdG~  160 (397)
T 3oz2_A          150 RAKMVIAADGF  160 (397)
T ss_dssp             EEEEEEECCCT
T ss_pred             EEeEEEeCCcc
Confidence            45899999997

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.77  E-value=1e-18  Score=134.22  Aligned_cols=152  Identities=20%  Similarity=0.220  Sum_probs=89.0

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh--HHhhhhhhHHhc---CCCC
Q psy2240          18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI--ALNELLPDWKDL---GAPL   92 (182)
Q Consensus        18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~---~~~~   92 (182)
                      .+|+.+||+|||||++|+++|+.|++      .|++|+|||+.+.+....  +..+.+.  .+.+.++.|...   ....
T Consensus        19 ~~M~~~DVvIVGgG~AGl~aA~~Lar------~G~~V~LiEr~~~~~~~~--G~~l~p~~~~~l~~lGl~~~l~~~~~~~   90 (591)
T 3i3l_A           19 SHMTRSKVAIIGGGPAGSVAGLTLHK------LGHDVTIYERSAFPRYRV--GESLLPGTMSILNRLGLQEKIDAQNYVK   90 (591)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSCSSCCCC--CCBCCHHHHHHHHHTTCHHHHHHHCCEE
T ss_pred             CcCCCCCEEEECcCHHHHHHHHHHHc------CCCCEEEEcCCCCCCCce--eeeECHHHHHHHHHcCCcHHHHhcCCcc
Confidence            34557899999999999999999999      899999999997554322  2222222  222222322211   1000


Q ss_pred             CccchhhhHHHHHhhc--cCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC-cEEE--
Q psy2240          93 NTPVHEDKFAYLTKSK--RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG-SVKG--  167 (182)
Q Consensus        93 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g-~~~~--  167 (182)
                      .....   +.+.....  ...+......+...+..+.+++..+.+.|.+.+++.|++++++++|+++..+++. ..+.  
T Consensus        91 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~  167 (591)
T 3i3l_A           91 KPSAT---FLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVR  167 (591)
T ss_dssp             ECEEE---EECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEE
T ss_pred             cCCcE---EEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEe
Confidence            00000   00000000  0000000001112233678999999999999999999999999999999864222 1111  


Q ss_pred             ------EEeCCEEEecCCC
Q psy2240         168 ------IATGDVGIAKDGS  180 (182)
Q Consensus       168 ------v~~~~~vi~adG~  180 (182)
                            ....++||+|+|.
T Consensus       168 ~~G~~~~i~AdlVV~AdG~  186 (591)
T 3i3l_A          168 RGGESVTVESDFVIDAGGS  186 (591)
T ss_dssp             ETTEEEEEEESEEEECCGG
T ss_pred             cCCceEEEEcCEEEECCCC
Confidence                  2346889999996

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.76  E-value=1.4e-18  Score=128.79  Aligned_cols=147  Identities=21%  Similarity=0.246  Sum_probs=89.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHh---cCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKD---LGAPLNTP   95 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~   95 (182)
                      .++||+|||||++|+++|+.|++      .|++|+||||.+.+..  ..+..+.+..  ..+.++.+..   ........
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~------~G~~V~v~E~~~~~~~--~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~   75 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNK------SGFKVKIVEKQKFPRF--VIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFG   75 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT------TTCCEEEECSSCSSCC--CSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECE
T ss_pred             ccCcEEEECCCHHHHHHHHHHHh------CCCCEEEEeCCCCCCC--cccCcccHhHHHHHHHcCChHHHHHcCCcccCC
Confidence            35899999999999999999999      8999999999975432  1222222221  2222222221   11000000


Q ss_pred             chhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE-------
Q psy2240          96 VHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-------  168 (182)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v-------  168 (182)
                      ..   +  ........+.............+.+++..+.+.|.+.+++.|++|+++++|++++.++++..+.+       
T Consensus        76 ~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~  150 (421)
T 3nix_A           76 AK---F--VRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNK  150 (421)
T ss_dssp             EE---E--EETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCE
T ss_pred             cE---E--EeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCE
Confidence            00   0  00000000111101111122367899999999999999999999999999999987655543333       


Q ss_pred             --EeCCEEEecCCC
Q psy2240         169 --ATGDVGIAKDGS  180 (182)
Q Consensus       169 --~~~~~vi~adG~  180 (182)
                        ...++||.|+|.
T Consensus       151 ~~~~a~~vV~A~G~  164 (421)
T 3nix_A          151 REIEARFIIDASGY  164 (421)
T ss_dssp             EEEEEEEEEECCGG
T ss_pred             EEEEcCEEEECCCC
Confidence              446889999985

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.75  E-value=1.1e-17  Score=126.48  Aligned_cols=147  Identities=20%  Similarity=0.241  Sum_probs=93.3

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHHhcCCCCCcc
Q psy2240          18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWKDLGAPLNTP   95 (182)
Q Consensus        18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   95 (182)
                      ++.+++||+||||||+|+++|+.|++      +|++|+||||.+..... ..+..+.+..+  .+.++.+......  ..
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~------~G~~v~vlE~~~~~~~~-~r~~~l~~~~~~~l~~lGl~~~~~~~--~~   77 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRL------AGVEVVVLERLVERTGE-SRGLGFTARTMEVFDQRGILPRFGEV--ET   77 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHH------TTCCEEEEESCCC-CCC-CCSEEECHHHHHHHHTTTCGGGGCSC--CB
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHH------CCCCEEEEeCCCCCCCC-CCcceECHHHHHHHHHCCCHHHHHhc--cc
Confidence            34567899999999999999999999      89999999999765432 22333444332  2333334333211  01


Q ss_pred             chhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE--------
Q psy2240          96 VHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--------  167 (182)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~--------  167 (182)
                      .....+    ....+.....   ....+..+.+++..+.+.|.+.+++.|++|+++++|++++.++++..+.        
T Consensus        78 ~~~~~~----~~~~~~~~~~---~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~  150 (500)
T 2qa1_A           78 STQGHF----GGLPIDFGVL---EGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKH  150 (500)
T ss_dssp             CCEEEE----TTEEEEGGGS---TTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEE
T ss_pred             cccccc----cceecccccC---CCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCE
Confidence            000000    0000111000   1111125678999999999999999999999999999998866554332        


Q ss_pred             EEeCCEEEecCCC
Q psy2240         168 IATGDVGIAKDGS  180 (182)
Q Consensus       168 v~~~~~vi~adG~  180 (182)
                      ....++||+|||+
T Consensus       151 ~~~a~~vVgADG~  163 (500)
T 2qa1_A          151 TLRAAYLVGCDGG  163 (500)
T ss_dssp             EEEESEEEECCCT
T ss_pred             EEEeCEEEECCCc
Confidence            2346899999997

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.75  E-value=3.6e-18  Score=129.68  Aligned_cols=149  Identities=20%  Similarity=0.283  Sum_probs=88.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH---HhhhhhhHHhcCCCCCccch
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA---LNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   97 (182)
                      .++||+|||||++|+++|+.|++      +|++|+|||+.+.....  .+..+.+..   +.+.++.+............
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~------~G~~V~liE~~~~~~~~--~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~   77 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAM------RGHRVLLLEREAFPRHQ--IGESLLPATVHGICAMLGLTDEMKRAGFPIKR   77 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT------TTCCEEEECSSCSSCCC--SCCBCCHHHHTTHHHHTTCHHHHHTTTCCEEC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHh------CCCCEEEEccCCCCCCC--CCcccCcchHHHHHHHhCcHHHHHHcCCcccc
Confidence            45899999999999999999999      89999999999754321  222222222   22333333221100000000


Q ss_pred             hhhHHHHHhhc--cCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE--------
Q psy2240          98 EDKFAYLTKSK--RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--------  167 (182)
Q Consensus        98 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~--------  167 (182)
                      ...+.+.....  ...+....  .......+.+++..+.+.|.+.+++.|++|+++++|+++..++ +.+.+        
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~-~~v~gv~~~~~dG  154 (512)
T 3e1t_A           78 GGTFRWGKEPEPWTFGFTRHP--DDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEG-ERAVGVRYRNTEG  154 (512)
T ss_dssp             EEEEECSSCSSCEEEESSSSS--SSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEET-TEEEEEEEECSSS
T ss_pred             CceEEecCCccccccccccCC--CCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEEC-CEEEEEEEEeCCC
Confidence            00000000000  00010000  1112236789999999999999999999999999999998744 43322        


Q ss_pred             ---EEeCCEEEecCCC
Q psy2240         168 ---IATGDVGIAKDGS  180 (182)
Q Consensus       168 ---v~~~~~vi~adG~  180 (182)
                         ....++||.|+|.
T Consensus       155 ~~~~i~ad~VI~AdG~  170 (512)
T 3e1t_A          155 VELMAHARFIVDASGN  170 (512)
T ss_dssp             CEEEEEEEEEEECCCT
T ss_pred             CEEEEEcCEEEECCCc
Confidence               3346889999997

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.75  E-value=2.6e-17  Score=126.12  Aligned_cols=146  Identities=19%  Similarity=0.195  Sum_probs=91.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh--HHhhhhhhHHhcCCCCCccchh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI--ALNELLPDWKDLGAPLNTPVHE   98 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   98 (182)
                      +++||+|||||++|+++|+.|++      .|++|+||||.+..... ..+..+.+.  .+.+.++.|.............
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~------~G~~V~VlEr~~~~~~~-~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~  120 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRA------GGVGALVLEKLVEPVGH-DRAGALHIRTVETLDLRGLLDRFLEGTQVAKGL  120 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHH------TTCCEEEEBSCSSCCCS-SSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH------CCCCEEEEcCCCCCCCC-ceEEEECHHHHHHHHHcCChHHHHhcCcccCCc
Confidence            45899999999999999999999      89999999998765432 222333333  2333344444432111111000


Q ss_pred             hhHHHHHhhc--cCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE--------E
Q psy2240          99 DKFAYLTKSK--RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--------I  168 (182)
Q Consensus        99 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~--------v  168 (182)
                       .   +....  .+....   .....+..+.+++..+.+.|.+.+++.|++|+++++|++++.++++..+.        .
T Consensus       121 -~---~~~~~~~~~~~~~---~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~  193 (570)
T 3fmw_A          121 -P---FAGIFTQGLDFGL---VDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYP  193 (570)
T ss_dssp             -C---BTTBCTTCCBGGG---SCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEE
T ss_pred             -e---eCCcccccccccc---cCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEE
Confidence             0   00000  011111   11112235678999999999999998999999999999998766664432        3


Q ss_pred             EeCCEEEecCCC
Q psy2240         169 ATGDVGIAKDGS  180 (182)
Q Consensus       169 ~~~~~vi~adG~  180 (182)
                      ...++||+|||.
T Consensus       194 ~~a~~vV~ADG~  205 (570)
T 3fmw_A          194 VRARYGVGCDGG  205 (570)
T ss_dssp             EEESEEEECSCS
T ss_pred             EEeCEEEEcCCC
Confidence            456899999996

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.73  E-value=3.1e-17  Score=124.08  Aligned_cols=145  Identities=21%  Similarity=0.251  Sum_probs=93.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHHhcCCCCCccch
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   97 (182)
                      ..++||+||||||+|+++|+.|++      +|++|+||||.+..... ..+..+.+..+  .+.++.+......  ....
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~------~G~~v~vlE~~~~~~~~-~r~~~l~~~~~~~l~~lGl~~~~~~~--~~~~   80 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRL------GGVDVMVLEQLPQRTGE-SRGLGFTARTMEVFDQRGILPAFGPV--ETST   80 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESCSSCCCC-CCSEEECHHHHHHHHHTTCGGGGCSC--CEES
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH------CCCCEEEEECCCCCCCC-CceeEECHHHHHHHHHCCCHHHHHhc--cccc
Confidence            356899999999999999999999      89999999998765432 22333444332  2333434333211  1100


Q ss_pred             hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE--------EE
Q psy2240          98 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--------IA  169 (182)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~--------v~  169 (182)
                      ...+    ....+.....   ....+..+.+++..+.+.|.+.+++.|++|+++++|++++.++++..+.        ..
T Consensus        81 ~~~~----~~~~~~~~~~---~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~  153 (499)
T 2qa2_A           81 QGHF----GGRPVDFGVL---EGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSL  153 (499)
T ss_dssp             EEEE----TTEEEEGGGS---TTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEE
T ss_pred             ccee----cceecccccC---CCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEE
Confidence            0000    0000111100   1111225688999999999999999999999999999998866654432        23


Q ss_pred             eCCEEEecCCC
Q psy2240         170 TGDVGIAKDGS  180 (182)
Q Consensus       170 ~~~~vi~adG~  180 (182)
                      ..++||+|||+
T Consensus       154 ~a~~vVgADG~  164 (499)
T 2qa2_A          154 TTRYVVGCDGG  164 (499)
T ss_dssp             EEEEEEECCCT
T ss_pred             EeCEEEEccCc
Confidence            46899999997

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.71  E-value=8.4e-18  Score=128.29  Aligned_cols=144  Identities=20%  Similarity=0.203  Sum_probs=90.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHh---cCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKD---LGAPLNTP   95 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~   95 (182)
                      .++||+|||||++|+++|+.|++      +|++|+||||.+...... .+..+.+..  +.+.++.+..   ........
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~------~G~~v~viEr~~~~~~~~-~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~   76 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLAR------QGVRVLVVERRPGLSPYP-RAAGQNPRTMELLRIGGVADEVVRADDIRGTQ   76 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHT------TTCCEEEECSSSSCCCCC-CSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTT
T ss_pred             ccCcEEEECcCHHHHHHHHHHHH------CCCCEEEEeCCCCCCCCC-ccceECHHHHHHHHHcCCHHHHHhhCCCcccc
Confidence            45899999999999999999999      899999999998654322 233333332  2222332222   11111100


Q ss_pred             ----------chhh-------hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeE
Q psy2240          96 ----------VHED-------KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVL  158 (182)
Q Consensus        96 ----------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~  158 (182)
                                ....       .+......    ...     ......+.+++..+.+.|.+.+++.|++|+++++|++++
T Consensus        77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~  147 (535)
T 3ihg_A           77 GDFVIRLAESVRGEILRTVSESFDDMVAA----TEP-----CTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFR  147 (535)
T ss_dssp             SCCEEEEESSSSSCEEEEEESCHHHHHHT----TGG-----GCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEE
T ss_pred             cceeeeEEeccCCceeeeccccccccccc----ccc-----CCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence                      0000       00000000    000     011225678999999999999999999999999999998


Q ss_pred             EcCC----CcEEE--------EEeCCEEEecCCC
Q psy2240         159 YHGD----GSVKG--------IATGDVGIAKDGS  180 (182)
Q Consensus       159 ~~~~----g~~~~--------v~~~~~vi~adG~  180 (182)
                      .+++    +..+.        ....++||+|||.
T Consensus       148 ~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~  181 (535)
T 3ihg_A          148 QHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGN  181 (535)
T ss_dssp             EECGGGCSEEEEEEEETTEEEEEEEEEEEECCCT
T ss_pred             ECCCCccccEEEEEEcCCCeEEEEeCEEEECCCC
Confidence            8665    43332        2346899999997

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.69  E-value=3.9e-18  Score=126.06  Aligned_cols=146  Identities=19%  Similarity=0.174  Sum_probs=85.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHh---cCCCCCc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKD---LGAPLNT   94 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~   94 (182)
                      .+.+||+|||||++|+++|+.|++      +|++|+||||.+..... ..+..+.+..  +.+.++.|..   .......
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~------~G~~V~v~E~~~~~~~~-~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~   93 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQ------SGIDCDVYEAVKEIKPV-GAAISVWPNGVKCMAHLGMGDIMETFGGPLRR   93 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSCC-----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh------CCCCEEEEeCCCCCCCc-CeeEEECHHHHHHHHHCCCHHHHHhhcCCCcc
Confidence            456899999999999999999999      89999999999765421 1222233222  2222222221   1111110


Q ss_pred             cchhhhHHHHHhh-cc--CCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----
Q psy2240          95 PVHEDKFAYLTKS-KR--IGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----  167 (182)
Q Consensus        95 ~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----  167 (182)
                      ...      .... ..  ..++............+.+++..|.+.|.+.+.+  ++|+++++|++++.++++..+.    
T Consensus        94 ~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g  165 (407)
T 3rp8_A           94 MAY------RDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDG  165 (407)
T ss_dssp             EEE------EETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTS
T ss_pred             eEE------EECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCC
Confidence            000      0000 00  0000000000011236788999999999999976  8899999999998765543332    


Q ss_pred             -EEeCCEEEecCCC
Q psy2240         168 -IATGDVGIAKDGS  180 (182)
Q Consensus       168 -v~~~~~vi~adG~  180 (182)
                       ....++||+|||.
T Consensus       166 ~~~~a~~vV~AdG~  179 (407)
T 3rp8_A          166 SSASGDLLIAADGS  179 (407)
T ss_dssp             CEEEESEEEECCCT
T ss_pred             CEEeeCEEEECCCc
Confidence             3456999999997

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.69  E-value=5.3e-16  Score=112.90  Aligned_cols=56  Identities=16%  Similarity=0.095  Sum_probs=42.7

Q ss_pred             ccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE-E-------EEeCCEEEecCCC
Q psy2240         125 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK-G-------IATGDVGIAKDGS  180 (182)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~-~-------v~~~~~vi~adG~  180 (182)
                      ...+++..+.+.|.+.+++.|++|+++++|++++.++++.+. .       ....+.||.|.|.
T Consensus       144 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~  207 (369)
T 3dme_A          144 TGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGL  207 (369)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGG
T ss_pred             CEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCc
Confidence            456788899999999999999999999999999886555222 1       2334667777764

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.69  E-value=7e-17  Score=119.48  Aligned_cols=147  Identities=20%  Similarity=0.214  Sum_probs=82.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cc-c-ccChh---HHhhhhhhHHhcCCCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG-A-VIDPI---ALNELLPDWKDLGAPLN   93 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~-~-~~~~~---~~~~~~~~~~~~~~~~~   93 (182)
                      +..+||+|||||++|+++|+.|++      .|.+|+|||+.+..++... ++ + +....   .....+.   .......
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~------~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~---~~~~~~~   95 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGK------RGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLS---GNPHFCK   95 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEE---SSTTTTH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH------CCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhh---cCHHHHH
Confidence            356899999999999999999999      8999999999998765432 11 1 10000   0000000   0000000


Q ss_pred             c----cchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE---
Q psy2240          94 T----PVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK---  166 (182)
Q Consensus        94 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~---  166 (182)
                      .    ....+...++.... ...........    .....+..+.+.|.+.+++.|++|+++++|+++..++++..+   
T Consensus        96 ~~l~~~~~~~~~~~~~~~G-i~~~~~~~g~~----~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~  170 (417)
T 3v76_A           96 SALARYRPQDFVALVERHG-IGWHEKTLGQL----FCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTS  170 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHTT-CCEEECSTTEE----EESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEET
T ss_pred             HHHHhcCHHHHHHHHHHcC-CCcEEeeCCEE----eeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEEC
Confidence            0    00112223332221 11111111001    113456789999999999999999999999999875544322   


Q ss_pred             -EEEeCCEEEecCCC
Q psy2240         167 -GIATGDVGIAKDGS  180 (182)
Q Consensus       167 -~v~~~~~vi~adG~  180 (182)
                       +....+.||.|+|.
T Consensus       171 ~g~i~ad~VIlAtG~  185 (417)
T 3v76_A          171 AGTVDAASLVVASGG  185 (417)
T ss_dssp             TEEEEESEEEECCCC
T ss_pred             CcEEEeeEEEECCCC
Confidence             12344666666664

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.67  E-value=2.2e-16  Score=116.37  Aligned_cols=126  Identities=17%  Similarity=0.176  Sum_probs=72.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cc--cccChh---HHhhhhhhHHhcCCCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG--AVIDPI---ALNELLPDWKDLGAPLN   93 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~--~~~~~~---~~~~~~~~~~~~~~~~~   93 (182)
                      |.++||+|||||++|+++|+.|++      +|.+|+|||+.+..++... ++  .+....   ...+.+..   . ..+.
T Consensus         2 M~~~dViIIGgG~aGl~aA~~la~------~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~---~-~~~~   71 (401)
T 2gqf_A            2 SQYSENIIIGAGAAGLFCAAQLAK------LGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ---N-PHFV   71 (401)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECS---C-TTST
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHh------CCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccC---C-HHHH
Confidence            456899999999999999999999      8999999999987754332 11  110000   00011100   0 0000


Q ss_pred             cc-----chhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEc
Q psy2240          94 TP-----VHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH  160 (182)
Q Consensus        94 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~  160 (182)
                      ..     ...+.+.++...+ ..+........+.   .. ++..+.+.|.+.+++.|++++++++|+++..+
T Consensus        72 ~~~l~~~~~~~~~~~~~~~G-i~~~~~~~g~~~p---~~-~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~  138 (401)
T 2gqf_A           72 KSALARYTNWDFISLVAEQG-ITYHEKELGQLFC---DE-GAEQIVEMLKSECDKYGAKILLRSEVSQVERI  138 (401)
T ss_dssp             HHHHHHSCHHHHHHHHHHTT-CCEEECSTTEEEE---TT-CTHHHHHHHHHHHHHHTCEEECSCCEEEEEEC
T ss_pred             HHHHHhCCHHHHHHHHHhCC-CceEECcCCEEcc---CC-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcc
Confidence            00     0111223332211 1111110000010   01 56789999999999999999999999999865

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.67  E-value=2.1e-17  Score=123.79  Aligned_cols=143  Identities=23%  Similarity=0.284  Sum_probs=85.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC-CccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG-GHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      .++||+|||||++|+++|+.|++      +|++|+|||+.+.+. +...++..+....+ +.++.+............  
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~------~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l-~~lg~~~~~~~~~~~~~~--   75 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSR------RGLKILLVDSKPWNRIGDKPCGDAVSKAHF-DKLGMPYPKGEELENKIN--   75 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSS------SSCCEEEECSSCGGGTTCSCCCCEEEHHHH-HHTTCCCCCGGGEEEEEE--
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH------CCCCEEEEECCCCCCCCcccccccccHHHH-HHhcCCCCchHHHHhhhc--
Confidence            46899999999999999999999      899999999987642 22223332322222 111111000000000000  


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------------
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------------  167 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------------  167 (182)
                      .+..+.....      ...+ .....+.+++..+.+.|.+.+.+.|++++++++|+++..++ +.+.+            
T Consensus        76 ~~~~~~~~~~------~~~~-~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~G~~~  147 (453)
T 3atr_A           76 GIKLYSPDMQ------TVWT-VNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFED-GYVKGAVLFNRRTNEEL  147 (453)
T ss_dssp             EEEEECTTSS------CEEE-EEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEET-TEEEEEEEEETTTTEEE
T ss_pred             ceEEECCCCc------eEEe-ECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEEC-CEEEEEEEEEcCCCceE
Confidence            0000000000      0000 01125678999999999999998999999999999998744 33321            


Q ss_pred             EEeCCEEEecCCC
Q psy2240         168 IATGDVGIAKDGS  180 (182)
Q Consensus       168 v~~~~~vi~adG~  180 (182)
                      ....++||+|||.
T Consensus       148 ~~~ad~VV~AdG~  160 (453)
T 3atr_A          148 TVYSKVVVEATGY  160 (453)
T ss_dssp             EEECSEEEECCGG
T ss_pred             EEEcCEEEECcCC
Confidence            3456899999996

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.67  E-value=6.6e-16  Score=117.21  Aligned_cols=44  Identities=34%  Similarity=0.493  Sum_probs=39.7

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ++.++||||||+|++|+++|+.|++      .|.+|+||||.+..+|.+.
T Consensus        38 ~~~~~DVvVVGaG~AGl~AA~~aa~------~G~~V~vlEk~~~~GG~s~   81 (510)
T 4at0_A           38 WDYEADVVVAGYGIAGVAASIEAAR------AGADVLVLERTSGWGGATA   81 (510)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCTTGG
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCCCCCCcch
Confidence            4567999999999999999999999      8999999999998887653

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.66  E-value=2.8e-16  Score=120.16  Aligned_cols=150  Identities=19%  Similarity=0.186  Sum_probs=87.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHHh---cCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWKD---LGAPLNTP   95 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~   95 (182)
                      .++||+|||||++|+++|+.|++      +|++|+||||.+..+... .+..+.+..+  .+.++.+..   ........
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~------~G~~V~vlEr~~~~~~~~-~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~   97 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAH------RQVGHLVVEQTDGTITHP-RVGTIGPRSMELFRRWGVAKQIRTAGWPGDHP   97 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSCSCCSSC-CCCEECHHHHHHHHHTTCHHHHHTSSCCTTSB
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH------CCCCEEEEeCCCCCCCCC-ceeeeCHHHHHHHHHcCChHHHHhhcCCcccc
Confidence            46899999999999999999999      899999999997664322 2333433332  222232222   11111100


Q ss_pred             chhhhHHHHHhh--ccCCCCCCC---CCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE---
Q psy2240          96 VHEDKFAYLTKS--KRIGIPILP---GMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG---  167 (182)
Q Consensus        96 ~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~---  167 (182)
                      .....+......  ..+..+...   .........+.+++..+.+.|.+.+++.   |+++++|++++.++++..+.   
T Consensus        98 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~  174 (549)
T 2r0c_A           98 LDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITD  174 (549)
T ss_dssp             CCEEEESSBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEE
T ss_pred             cceEEeccCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEE
Confidence            000000000000  001111000   0001122346788999999999999876   99999999998866654332   


Q ss_pred             -------EEeCCEEEecCCC
Q psy2240         168 -------IATGDVGIAKDGS  180 (182)
Q Consensus       168 -------v~~~~~vi~adG~  180 (182)
                             ....++||+|||.
T Consensus       175 ~~~G~~~~i~a~~vVgADG~  194 (549)
T 2r0c_A          175 LRTGATRAVHARYLVACDGA  194 (549)
T ss_dssp             TTTCCEEEEEEEEEEECCCT
T ss_pred             CCCCCEEEEEeCEEEECCCC
Confidence                   2345899999997

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.65  E-value=5.3e-16  Score=115.97  Aligned_cols=145  Identities=21%  Similarity=0.316  Sum_probs=80.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccc--c-----ChhHHhhhhhhHHhcCCC-
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAV--I-----DPIALNELLPDWKDLGAP-   91 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~--~-----~~~~~~~~~~~~~~~~~~-   91 (182)
                      +++||+|||||++|+++|+.|++      .|.+|+||||.+..++... +++.  .     ....+...+......... 
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~------~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAE------EGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSA   98 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHH------CCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHH
Confidence            45899999999999999999999      8999999999987765332 1111  0     011111111100000000 


Q ss_pred             CCccchhhhHHHHHhhccCCCCCCCCCCCCCCCcccc----chHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE
Q psy2240          92 LNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVV----RLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG  167 (182)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~  167 (182)
                      +......+.+.|+.... ..+...       ..+..+    ....+.+.|.+.+++.|++|+++++|+++..++ +.+++
T Consensus        99 ~~~~~~~~~~~~~~~~G-~~~~~~-------~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~-~~v~~  169 (447)
T 2i0z_A           99 FSIFNNEDIITFFENLG-VKLKEE-------DHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-GQTKA  169 (447)
T ss_dssp             HHHSCHHHHHHHHHHTT-CCEEEC-------GGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEE
T ss_pred             HHhcCHHHHHHHHHhcC-CceEEe-------eCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC-CcEEE
Confidence            00000112233332211 111110       001112    357889999999999999999999999998643 44333


Q ss_pred             E-------EeCCEEEecCCC
Q psy2240         168 I-------ATGDVGIAKDGS  180 (182)
Q Consensus       168 v-------~~~~~vi~adG~  180 (182)
                      |       ...+.||.|+|.
T Consensus       170 V~~~~G~~i~Ad~VVlAtGg  189 (447)
T 2i0z_A          170 VILQTGEVLETNHVVIAVGG  189 (447)
T ss_dssp             EEETTCCEEECSCEEECCCC
T ss_pred             EEECCCCEEECCEEEECCCC
Confidence            3       234556655554

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.65  E-value=1.4e-15  Score=111.43  Aligned_cols=156  Identities=19%  Similarity=0.228  Sum_probs=87.3

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccChhH-------H----hhhhhhHH
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDPIA-------L----NELLPDWK   86 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~~~-------~----~~~~~~~~   86 (182)
                      .+.++||+|||||++|+++|+.|++      +|.+|+|||+....++.+. +++.+.+..       .    ......|.
T Consensus        14 ~~~~~dvvIIGgG~~Gl~~A~~La~------~G~~V~llE~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~   87 (382)
T 1ryi_A           14 MKRHYEAVVIGGGIIGSAIAYYLAK------ENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYK   87 (382)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTT
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHh------CCCcEEEEeCCCCCcccchhcCceeccCccCCCCcHHHHHHHHHHHHHH
Confidence            3456899999999999999999999      8999999999876554432 223222111       0    00011111


Q ss_pred             h--------cCCCCC--c--cc----hhhhHHHHHhhccC-C------------CCCCCC---CCCCCCCccccchHHHH
Q psy2240          87 D--------LGAPLN--T--PV----HEDKFAYLTKSKRI-G------------IPILPG---MPMNNHGNYVVRLGHVV  134 (182)
Q Consensus        87 ~--------~~~~~~--~--~~----~~~~~~~~~~~~~~-~------------~~~~~~---~~~~~~~~~~~~~~~l~  134 (182)
                      .        .+....  .  .+    .......+...... .            .+.+..   ...+.+....+++..+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  167 (382)
T 1ryi_A           88 GLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVC  167 (382)
T ss_dssp             THHHHHHHHHCCCCCCBCCCEEEEESSHHHHHHHHTTTTSTTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHH
T ss_pred             HHHHHHHHhhCCCcCeeecceEEEEeCHHHHHHHHHHhhcCCeEEECHHHHHHhCCCCCcccceEEEeCCCeEEcHHHHH
Confidence            0        011110  0  00    01111111110000 0            010000   00112234577888999


Q ss_pred             HHHHHHHHHcCcEEecCCccceeEEcCCCcEE----EEEeCCEEEecCCC
Q psy2240         135 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK----GIATGDVGIAKDGS  180 (182)
Q Consensus       135 ~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~----~v~~~~~vi~adG~  180 (182)
                      +.|.+.+++.|++++++++|+++..++++..+    +....+.||.|+|.
T Consensus       168 ~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~  217 (382)
T 1ryi_A          168 KAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGV  217 (382)
T ss_dssp             HHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTEEEEEEEEEECCGG
T ss_pred             HHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCceEEcCEEEECCCh
Confidence            99999999999999999999999874443311    12345677777775

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.65  E-value=2.7e-15  Score=110.51  Aligned_cols=153  Identities=20%  Similarity=0.214  Sum_probs=85.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC--Cccc-cccccC----h----hHHhhhhhhHHh--
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG--GHIL-SGAVID----P----IALNELLPDWKD--   87 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~--g~~~-~~~~~~----~----~~~~~~~~~~~~--   87 (182)
                      ..+||+|||||++|+++|+.|++      +|.+|+||||.+..+  +.+. ..+.+.    .    ....+.+..|..  
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~------~G~~V~vlE~~~~~~~~gas~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   76 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAE------RGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPLWRALE   76 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESSCTTCSSSSCCSSEEEECSCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCCCCCCCCCCCcCeEEEeccCcchhhhHHHHHHHHHHHHH
Confidence            35899999999999999999999      899999999987654  3332 111110    0    111111222221  


Q ss_pred             --cCCCCCc----------------cchhhhHHHHHhhccCCCCC---------CCCC-------CCCCCCccccchHHH
Q psy2240          88 --LGAPLNT----------------PVHEDKFAYLTKSKRIGIPI---------LPGM-------PMNNHGNYVVRLGHV  133 (182)
Q Consensus        88 --~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~---------~~~~-------~~~~~~~~~~~~~~l  133 (182)
                        .......                ........+.... ......         ++..       ..+.+....+++..+
T Consensus        77 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~  155 (397)
T 2oln_A           77 SRCERRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKL-SVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGT  155 (397)
T ss_dssp             HHHTCCCEECCCEEEEECSSCCBTTBCHHHHHHHHHHT-TCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHHHH
T ss_pred             HHhCccHHHHCCcEEEcCCCccchhHHHHHHHHHHHHc-CCCceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcHHHH
Confidence              1111100                0001111111111 111100         0000       011223457788899


Q ss_pred             HHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----EEeCCEEEecCCC
Q psy2240         134 VKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----IATGDVGIAKDGS  180 (182)
Q Consensus       134 ~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----v~~~~~vi~adG~  180 (182)
                      .+.|.+.+++.|++|+++++|++|+.++++..+.    ...++.||.|+|.
T Consensus       156 ~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g~i~a~~VV~A~G~  206 (397)
T 2oln_A          156 LAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRGTYRAGKVVLACGP  206 (397)
T ss_dssp             HHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSCEEEEEEEEECCGG
T ss_pred             HHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCCEEEcCEEEEcCCc
Confidence            9999999999999999999999998755432221    2234667777764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.65  E-value=4.1e-15  Score=114.18  Aligned_cols=140  Identities=21%  Similarity=0.283  Sum_probs=82.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccCh--hH----------HhhhhhhHHh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDP--IA----------LNELLPDWKD   87 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~--~~----------~~~~~~~~~~   87 (182)
                      .++||+|||||++|+++|+.|++      .|.+|+||||.+..++.+. +++.+..  ..          ....+..+..
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~------~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~  193 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKK------AGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMK  193 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH------HTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHH
Confidence            56899999999999999999999      7999999999998877653 3322211  01          1111222222


Q ss_pred             cCCCCCccc--------hhhhHHHHHhhccCCCCCC---CCCCC---CCCCccccchHHHHHHHHHHHHHcCcEEecCCc
Q psy2240          88 LGAPLNTPV--------HEDKFAYLTKSKRIGIPIL---PGMPM---NNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIP  153 (182)
Q Consensus        88 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~  153 (182)
                      .........        ....+.|+... ...+..+   .....   ..+....+.+..+.+.|.+.+++.|++|+++++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~-Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~  272 (566)
T 1qo8_A          194 GGRQQNDIKLVTILAEQSADGVQWLESL-GANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSR  272 (566)
T ss_dssp             HTTTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEE
T ss_pred             hcCCCCCHHHHHHHHhccHHHHHHHHhc-CCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCE
Confidence            221111110        11223344332 1222111   00000   001111245778999999999999999999999


Q ss_pred             cceeEEcCCCcEEE
Q psy2240         154 ASEVLYHGDGSVKG  167 (182)
Q Consensus       154 v~~i~~~~~g~~~~  167 (182)
                      |++|..++++.+.+
T Consensus       273 v~~l~~~~~g~v~G  286 (566)
T 1qo8_A          273 VVKLVVNDDHSVVG  286 (566)
T ss_dssp             EEEEEECTTSBEEE
T ss_pred             EEEEEECCCCcEEE
Confidence            99998754355544

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.64  E-value=6.3e-17  Score=119.28  Aligned_cols=147  Identities=16%  Similarity=0.100  Sum_probs=87.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhcCCCCCccchhh
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      ++||+|||||++|+++|+.|++      .|++|+||||.+.... ...+..+.+..  ..+.++.+...... ...... 
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~------~G~~V~viE~~~~~~~-~~~~~~l~~~~~~~l~~~g~~~~~~~~-~~~~~~-   76 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGR------QGHRVVVVEQARRERA-INGADLLKPAGIRVVEAAGLLAEVTRR-GGRVRH-   76 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSCCC----CCCCEECHHHHHHHHHTTCHHHHHHT-TCEEEC-
T ss_pred             cCCEEEECcCHHHHHHHHHHHh------CCCcEEEEeCCCCCCc-cCceeeECchHHHHHHHcCcHHHHHHh-CCCcce-
Confidence            5799999999999999999999      8999999999875421 12222333322  22222222221000 000000 


Q ss_pred             hHHHHHhhc--cCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCc--EEE-----EE
Q psy2240         100 KFAYLTKSK--RIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGS--VKG-----IA  169 (182)
Q Consensus       100 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~--~~~-----v~  169 (182)
                       +.++....  ...++. .... .....+.+++..+.+.|.+.+++. |++|+++++|++++.++++.  .+.     ..
T Consensus        77 -~~~~~~~g~~~~~~~~-~~~~-~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~  153 (399)
T 2x3n_A           77 -ELEVYHDGELLRYFNY-SSVD-ARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVL  153 (399)
T ss_dssp             -EEEEEETTEEEEEEET-TSSC-GGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             -eEEEeCCCCEEEecch-HHhc-ccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEE
Confidence             00000000  000000 0000 111246789999999999999987 89999999999998766554  231     33


Q ss_pred             eCCEEEecCCC
Q psy2240         170 TGDVGIAKDGS  180 (182)
Q Consensus       170 ~~~~vi~adG~  180 (182)
                      ..++||+|||.
T Consensus       154 ~ad~vV~AdG~  164 (399)
T 2x3n_A          154 RPRVVVGADGI  164 (399)
T ss_dssp             EEEEEEECCCT
T ss_pred             ECCEEEECCCC
Confidence            45899999997

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.64  E-value=3.9e-15  Score=109.04  Aligned_cols=153  Identities=16%  Similarity=0.272  Sum_probs=87.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccCh----h----HHhhhhhhHHhc---
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDP----I----ALNELLPDWKDL---   88 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~----~----~~~~~~~~~~~~---   88 (182)
                      .++||+|||||++|+++|++|++      +|.+|+|||+....++.+. +++.+.+    .    ........|...   
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~------~G~~V~lle~~~~~~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~l~~~   77 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAK------RGEEVTVIEKRFIGSGSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEE   77 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSTTCSHHHHCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCCCCCccccccCeeeecCCChHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999      8999999999864443332 2222211    0    111111222211   


Q ss_pred             -CCCC--Cccc----hhhhHHHHH------hhccCCC------------CCCC--CC--CCCCCCccccchHHHHHHHHH
Q psy2240          89 -GAPL--NTPV----HEDKFAYLT------KSKRIGI------------PILP--GM--PMNNHGNYVVRLGHVVKWLGE  139 (182)
Q Consensus        89 -~~~~--~~~~----~~~~~~~~~------~~~~~~~------------~~~~--~~--~~~~~~~~~~~~~~l~~~l~~  139 (182)
                       +..+  ...+    .......+.      .......            +.+.  ..  ..+.+....+++..+.+.|.+
T Consensus        78 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  157 (382)
T 1y56_B           78 YGFSFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAV  157 (382)
T ss_dssp             HTCCEECCCEEEEECSHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHSSTTCCCTTCCEEEEETTCCEECHHHHHHHHHH
T ss_pred             hCCCeeccceEEEEeCHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHhCCCCCcccceEEEEcCCCeeECHHHHHHHHHH
Confidence             1000  0000    011111100      0001111            1110  00  011233456788999999999


Q ss_pred             HHHHcCcEEecCCccceeEEcCCCcEEEE------EeCCEEEecCCC
Q psy2240         140 QAEAMGVEIYPGIPASEVLYHGDGSVKGI------ATGDVGIAKDGS  180 (182)
Q Consensus       140 ~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------~~~~~vi~adG~  180 (182)
                      .+++.|++|+++++|++++.++ +.+.++      ...+.||.|+|.
T Consensus       158 ~~~~~Gv~i~~~~~v~~i~~~~-~~v~gv~~~~g~i~a~~VV~A~G~  203 (382)
T 1y56_B          158 KAKEYGAKLLEYTEVKGFLIEN-NEIKGVKTNKGIIKTGIVVNATNA  203 (382)
T ss_dssp             HHHHTTCEEECSCCEEEEEESS-SBEEEEEETTEEEECSEEEECCGG
T ss_pred             HHHHCCCEEECCceEEEEEEEC-CEEEEEEECCcEEECCEEEECcch
Confidence            9999999999999999998744 444433      345778888775

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.64  E-value=1.3e-14  Score=106.91  Aligned_cols=173  Identities=20%  Similarity=0.246  Sum_probs=93.4

Q ss_pred             CCcCCCCCCCccccccccccccccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCCCCCccc-cccccCh---
Q psy2240           1 MLSFGSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAEVGGHIL-SGAVIDP---   75 (182)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~~~g~~~-~~~~~~~---   75 (182)
                      |..+.+....|....++ .+.++||+|||||++|+++|++|++.     +| .+|+|||+.+..++.+. +.+.+..   
T Consensus         1 ~~~~~~~~~~~~~~~~~-~~~~~dVvIIG~G~~Gl~~A~~La~~-----~G~~~V~vlE~~~~~~gas~~~~g~~~~~~~   74 (405)
T 2gag_B            1 MADLLPEHPEFLWANPE-PKKSYDAIIVGGGGHGLATAYFLAKN-----HGITNVAVLEKGWLAGGNMARNTTIIRSNYL   74 (405)
T ss_dssp             --CCCCCCCSCCCCCCC-CCSEEEEEEECCSHHHHHHHHHHHHH-----HCCCCEEEECSSSTTCSGGGTSCCCBCCCCS
T ss_pred             CccccccCccceecCCC-CCCcCCEEEECcCHHHHHHHHHHHHh-----cCCCcEEEEeCCCCCCCcccccCceeeecCC
Confidence            33445555556322221 24568999999999999999999972     37 89999999985544432 2222211   


Q ss_pred             -----hHHhhhhhhHHh----cCCC--CCc--cc----hhhhHHHHH------hhccCCC------------CCCC----
Q psy2240          76 -----IALNELLPDWKD----LGAP--LNT--PV----HEDKFAYLT------KSKRIGI------------PILP----  116 (182)
Q Consensus        76 -----~~~~~~~~~~~~----~~~~--~~~--~~----~~~~~~~~~------~~~~~~~------------~~~~----  116 (182)
                           ......+..|..    .+..  +..  .+    .......+.      .......            +.+.    
T Consensus        75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~  154 (405)
T 2gag_B           75 WDESAGIYEKSLKLWEQLPEDLEYDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGVDAEWLDPSQVKEACPIINTSDD  154 (405)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTCCCCCBCCCEEEEECSHHHHHHHHHHHHHHHTBTCCCEEECHHHHHHHCTTSCCSTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCCcCEecccEEEEEcCHHHHHHHHHHHHHHHhcCCCceEeCHHHHHhhCCCCccccc
Confidence                 111111122221    1111  000  00    001111100      0111111            1000    


Q ss_pred             ---C--CCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe------CCEEEecCCC
Q psy2240         117 ---G--MPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT------GDVGIAKDGS  180 (182)
Q Consensus       117 ---~--~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~------~~~vi~adG~  180 (182)
                         .  ...+.+....+++..+.+.|.+.+++.|++++++++|+++..+ ++.++++.+      .+.||.|+|.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~a~~vV~a~G~  228 (405)
T 2gag_B          155 IRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTTRGTIHAGKVALAGAG  228 (405)
T ss_dssp             SSSCCCEEEEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTCCEEEEEEEECCGG
T ss_pred             ccccceeEEEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEe-CCEEEEEEeCCceEECCEEEECCch
Confidence               0  0011223456788899999999999999999999999999874 344444433      4667777774

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.64  E-value=1.3e-15  Score=111.67  Aligned_cols=140  Identities=24%  Similarity=0.240  Sum_probs=85.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhc---CCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDL---GAPLNTP   95 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~   95 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+||||.+..+.. ..+..+.+..  ..+.++.+...   .......
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~------~G~~v~viE~~~~~~~~-~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~   82 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQ------NGWDVRLHEKSSELRAF-GAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTY   82 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSCCCC-SSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH------CCCCEEEEecCCCCCCC-CceEEeCccHHHHHHHcCCHHHHHhhCCCccce
Confidence            35799999999999999999999      89999999998766532 1222222222  12222222221   1111000


Q ss_pred             chhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE----EEEeC
Q psy2240          96 VHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK----GIATG  171 (182)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~----~v~~~  171 (182)
                      .      ++.. +.. +..   .+......+.+++..+.+.|.+.+++.|++|+++++|++++.  ++.+.    .....
T Consensus        83 ~------~~~~-g~~-~~~---~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~~v~~~~g~~~~a  149 (379)
T 3alj_A           83 E------TWMH-NKS-VSK---ETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VGRLTLQTGEVLEA  149 (379)
T ss_dssp             E------EEET-TEE-EEE---ECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TTEEEETTSCEEEC
T ss_pred             E------EEeC-Cce-eee---ccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CCEEEECCCCEEEc
Confidence            0      0000 000 000   000011257889999999999999999999999999999875  33211    13457


Q ss_pred             CEEEecCCC
Q psy2240         172 DVGIAKDGS  180 (182)
Q Consensus       172 ~~vi~adG~  180 (182)
                      ++||+|||.
T Consensus       150 d~vV~AdG~  158 (379)
T 3alj_A          150 DLIVGADGV  158 (379)
T ss_dssp             SEEEECCCT
T ss_pred             CEEEECCCc
Confidence            999999997

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.64  E-value=5.1e-15  Score=110.35  Aligned_cols=154  Identities=16%  Similarity=0.253  Sum_probs=89.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCCCCcccccc---cc--------Ch------hHHhhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEVGGHILSGA---VI--------DP------IALNEL   81 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~~g~~~~~~---~~--------~~------~~~~~~   81 (182)
                      ..++||+|||||++|+++|++|++      +|. +|+||||.+..++.+....   .+        ..      ......
T Consensus         4 ~~~~dVvIIGgG~aGlsaA~~La~------~G~~~V~vlE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   77 (438)
T 3dje_A            4 TKSSSLLIVGAGTWGTSTALHLAR------RGYTNVTVLDPYPVPSAISAGNDVNKVISSGQYSNNKDEIEVNEILAEEA   77 (438)
T ss_dssp             CTTSCEEEECCSHHHHHHHHHHHH------TTCCCEEEEESSCSSCTTCTTCSSCEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH------cCCCcEEEEeCCCCCCCCccCCCCccEEEeccCCchhhhcchhHHHHHHH
Confidence            456899999999999999999999      899 9999999987665432110   00        01      122222


Q ss_pred             hhhHHhcCCC---CC-----c-cchhhhHHHHHhh----ccCCC-------------CC-C-C-CC----CCCCCCc-cc
Q psy2240          82 LPDWKDLGAP---LN-----T-PVHEDKFAYLTKS----KRIGI-------------PI-L-P-GM----PMNNHGN-YV  127 (182)
Q Consensus        82 ~~~~~~~~~~---~~-----~-~~~~~~~~~~~~~----~~~~~-------------~~-~-~-~~----~~~~~~~-~~  127 (182)
                      +..|......   +.     . .........+...    .....             +. + . .+    ..+.+.. ..
T Consensus        78 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~l~~~~~~g~~g~~~~~~~g~  157 (438)
T 3dje_A           78 FNGWKNDPLFKPYYHDTGLLMSACSQEGLDRLGVRVRPGEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGW  157 (438)
T ss_dssp             HHHHHHCTTTGGGEECCCEEEEECSHHHHHHHHHHHCGGGCTTCEEECSHHHHHTTSCTTTSCSCCTTCEEEEESSSCEE
T ss_pred             HHHHhhCccccCcEeccceEEEecCcchHHHHHHHHhhcccCCceecCCHHHHHHhCCcccccCCCCCceEEEeCCCCEE
Confidence            3344432100   00     0 0011111111110    00111             10 0 0 00    1122234 67


Q ss_pred             cchHHHHHHHHHHHHHcCcEEecCC---ccceeEEcCCCcEEEE-------EeCCEEEecCCC
Q psy2240         128 VRLGHVVKWLGEQAEAMGVEIYPGI---PASEVLYHGDGSVKGI-------ATGDVGIAKDGS  180 (182)
Q Consensus       128 ~~~~~l~~~l~~~~~~~gv~i~~~~---~v~~i~~~~~g~~~~v-------~~~~~vi~adG~  180 (182)
                      +++..+.+.|.+.+++.|++|++++   +|++|..+ ++.+.+|       +.++.||.|.|+
T Consensus       158 ~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~~G~~i~Ad~VV~AtG~  219 (438)
T 3dje_A          158 AHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTADGKIWRAERTFLCAGA  219 (438)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE-TTEEEEEEETTTEEEECSEEEECCGG
T ss_pred             ecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec-CCeEEEEEECCCCEEECCEEEECCCC
Confidence            7888999999999999999999999   99999874 4445433       335667777664

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.63  E-value=9.4e-15  Score=114.53  Aligned_cols=154  Identities=14%  Similarity=0.094  Sum_probs=86.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC-ccc-cccccChh------HH--------hhhhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG-HIL-SGAVIDPI------AL--------NELLPD   84 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g-~~~-~~~~~~~~------~~--------~~~~~~   84 (182)
                      .++||+|||||++|+++|+.|++      +|.+|+|||+...+++ .+. +++.+.+.      .+        ......
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~------~G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~a~~~  336 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQR------RGAVVTLYCADAQPAQGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQ  336 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHT------TTCCEEEEESSSSTTCSGGGCSCEEECCCCCSSCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHH------CCCcEEEEeCCCccccccccccCCEEecCCCCCChHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999      8999999999865553 222 22222110      01        011122


Q ss_pred             HHhc---CCCCCc--------cchhhhHHHHHhhc--cCCCC---CC-----------CC--CCCCCCCccccchHHHHH
Q psy2240          85 WKDL---GAPLNT--------PVHEDKFAYLTKSK--RIGIP---IL-----------PG--MPMNNHGNYVVRLGHVVK  135 (182)
Q Consensus        85 ~~~~---~~~~~~--------~~~~~~~~~~~~~~--~~~~~---~~-----------~~--~~~~~~~~~~~~~~~l~~  135 (182)
                      |...   +.....        .........+....  .....   .+           ..  ...+.+....+++..+.+
T Consensus       337 ~~~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~  416 (689)
T 3pvc_A          337 YDQLLEQGIAFDHQWCGVSQLAFDDKSRGKIEKMLHTQWPVEFAEAMSREQLSELAGLDCAHDGIHYPAGGWLCPSDLTH  416 (689)
T ss_dssp             HHHHHHTTCCCCEECCCEEEECCSHHHHHHHHHHTTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHHH
T ss_pred             HHHhhhhccccccccCceEEeccCHHHHHHHHHHHhcCCChHHhhccCHHHHHHhcCCCcccceEEecCCeEECHHHHHH
Confidence            2211   111100        00111111111111  11110   00           00  001223355678899999


Q ss_pred             HHHHHHHHcCcEEecCCccceeEEcCCCcEEE------EEeCCEEEecCCC
Q psy2240         136 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------IATGDVGIAKDGS  180 (182)
Q Consensus       136 ~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------v~~~~~vi~adG~  180 (182)
                      .|.+.+++.|++|+++++|++|+.+++++.+.      ....+.||.|.|.
T Consensus       417 aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~  467 (689)
T 3pvc_A          417 ALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGH  467 (689)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGG
T ss_pred             HHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCc
Confidence            99999999999999999999998865553221      1234566666664

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.63  E-value=1.5e-14  Score=109.97  Aligned_cols=150  Identities=15%  Similarity=0.182  Sum_probs=83.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccc------cccChh-HHh---hhhhhHHhcC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG------AVIDPI-ALN---ELLPDWKDLG   89 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~------~~~~~~-~~~---~~~~~~~~~~   89 (182)
                      ...+||+|||||++|+++|+.|++      .|++|+|||+.+..++.....      ....+. ...   .-...|....
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~------~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgk  178 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQ------MGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGK  178 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHH------TTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH------CCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCc
Confidence            345799999999999999999999      899999999987653221100      000000 000   0000010000


Q ss_pred             C--CCCc--cchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcE
Q psy2240          90 A--PLNT--PVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV  165 (182)
Q Consensus        90 ~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~  165 (182)
                      .  ....  ......+.++.... ......  +... +.........+.+.|.+.+++.|++|+++++|+++..+ ++.+
T Consensus       179 l~~~i~~~~~~~~~v~~~~~~~G-~~~~i~--~~~~-p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~-~~~v  253 (549)
T 3nlc_A          179 LYSQVKDPNFYGRKVITEFVEAG-APEEIL--YVSK-PHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHME-DGQI  253 (549)
T ss_dssp             CCCCSCCTTCHHHHHHHHHHHTT-CCGGGG--TBSS-CCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEES-SSBE
T ss_pred             eEEEeccccccHHHHHHHHHHcC-CCceEe--eccc-cccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEe-CCEE
Confidence            0  0000  00112222222211 111110  0001 11223455678999999999999999999999999874 4444


Q ss_pred             EEE-------EeCCEEEecCCC
Q psy2240         166 KGI-------ATGDVGIAKDGS  180 (182)
Q Consensus       166 ~~v-------~~~~~vi~adG~  180 (182)
                      .++       ...+.||.|+|+
T Consensus       254 ~gV~l~~G~~i~Ad~VVlA~G~  275 (549)
T 3nlc_A          254 TGVTLSNGEEIKSRHVVLAVGH  275 (549)
T ss_dssp             EEEEETTSCEEECSCEEECCCT
T ss_pred             EEEEECCCCEEECCEEEECCCC
Confidence            443       345778888887

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.63  E-value=2e-14  Score=112.54  Aligned_cols=154  Identities=16%  Similarity=0.120  Sum_probs=87.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC-ccc-cccccCh------hHHh--------hhhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG-HIL-SGAVIDP------IALN--------ELLPD   84 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g-~~~-~~~~~~~------~~~~--------~~~~~   84 (182)
                      ..+||+|||||++|+++|+.|++      +|.+|+||||...+++ .+. +++.+.+      ..+.        .....
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~------~G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  344 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLR------RGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRF  344 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT------TTCEEEEEESSSSSSCSTTCCSCEEECCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCcccccCccCCCceecCcCCCCccHHHHHHHHHHHHHHHH
Confidence            34899999999999999999999      8999999999765553 222 2222211      1111        11222


Q ss_pred             HHhcCCCCCc--------cchhhhHHHHHh--hccCCCC---CC-----------CC--CCCCCCCccccchHHHHHHHH
Q psy2240          85 WKDLGAPLNT--------PVHEDKFAYLTK--SKRIGIP---IL-----------PG--MPMNNHGNYVVRLGHVVKWLG  138 (182)
Q Consensus        85 ~~~~~~~~~~--------~~~~~~~~~~~~--~~~~~~~---~~-----------~~--~~~~~~~~~~~~~~~l~~~l~  138 (182)
                      |...+.....        .........+..  ...+...   .+           ..  ...+.+....+++..+...|.
T Consensus       345 ~~~l~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~  424 (676)
T 3ps9_A          345 YDQLPVKFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVL  424 (676)
T ss_dssp             HHHCCSCCCEECCCEEEECCSHHHHHHHHHHHTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHHHHHH
T ss_pred             HHHCCCCcCcCcCCeeeecCCHHHHHHHHHHHhcCCcHHHhhhCCHHHHHHhhCCCccCCcEEecCCeeeCHHHHHHHHH
Confidence            3333221110        001111111111  1111111   00           00  011223355778899999999


Q ss_pred             HHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEecCCC
Q psy2240         139 EQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIAKDGS  180 (182)
Q Consensus       139 ~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~adG~  180 (182)
                      +.+++.|++|+++++|++|..+++++.+.     ....+.||.|+|.
T Consensus       425 ~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~  471 (676)
T 3ps9_A          425 ELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGH  471 (676)
T ss_dssp             HHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGG
T ss_pred             HHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCc
Confidence            99999999999999999998755442211     1233667777664

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.62  E-value=2.4e-14  Score=110.09  Aligned_cols=139  Identities=27%  Similarity=0.372  Sum_probs=80.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccCh--hH----------HhhhhhhHHhc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDP--IA----------LNELLPDWKDL   88 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~--~~----------~~~~~~~~~~~   88 (182)
                      ++||+|||||++|+++|+.|++      .|.+|+||||.+..++.+. +++.+..  ..          ....+..+...
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~------~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~  199 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATD------SGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKG  199 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHh
Confidence            6899999999999999999999      8999999999998877653 3322210  01          11111111111


Q ss_pred             CCCCCccc--------hhhhHHHHHhhccCCCCCC---CCCCCC---CCCccccchHHHHHHHHHHHHHcCcEEecCCcc
Q psy2240          89 GAPLNTPV--------HEDKFAYLTKSKRIGIPIL---PGMPMN---NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPA  154 (182)
Q Consensus        89 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v  154 (182)
                      +....+..        ....+.|+... ...+...   ......   ........+..+.+.|.+.+++.|++|+++++|
T Consensus       200 g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v  278 (571)
T 1y0p_A          200 GQNINDPALVKVLSSHSKDSVDWMTAM-GADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRG  278 (571)
T ss_dssp             TTTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEE
T ss_pred             cCCCCCHHHHHHHHHccHHHHHHHHhc-CCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEe
Confidence            11111110        11223333321 1222110   000000   000111345789999999999999999999999


Q ss_pred             ceeEEcCCCcEEE
Q psy2240         155 SEVLYHGDGSVKG  167 (182)
Q Consensus       155 ~~i~~~~~g~~~~  167 (182)
                      ++|..++++++.+
T Consensus       279 ~~l~~~~~g~v~G  291 (571)
T 1y0p_A          279 IEVLKDDKGTVKG  291 (571)
T ss_dssp             EEEEECTTSCEEE
T ss_pred             eEeEEcCCCeEEE
Confidence            9998755365543

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.62  E-value=1.3e-14  Score=106.48  Aligned_cols=152  Identities=22%  Similarity=0.266  Sum_probs=86.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC--Cccc-cccccC---------hhHHhhhhhhHHhc-
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG--GHIL-SGAVID---------PIALNELLPDWKDL-   88 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~--g~~~-~~~~~~---------~~~~~~~~~~~~~~-   88 (182)
                      ++||+|||||++|+++|++|++      +|.+|+|||+....+  +.+. +.+.+.         .....+....|... 
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~------~G~~V~vie~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~   76 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAK------QGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELE   76 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHh------CCCeEEEEeCCCCCCCCCCCCCcchhhhhhhcCCchHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999      899999999987655  4332 111111         01111222222221 


Q ss_pred             ---CCCCCcc-----c----h----hhhHHHHHhhccCCCCCC---------CCC-------CCCCCCccccchHHHHHH
Q psy2240          89 ---GAPLNTP-----V----H----EDKFAYLTKSKRIGIPIL---------PGM-------PMNNHGNYVVRLGHVVKW  136 (182)
Q Consensus        89 ---~~~~~~~-----~----~----~~~~~~~~~~~~~~~~~~---------~~~-------~~~~~~~~~~~~~~l~~~  136 (182)
                         +......     +    .    .....+... .......+         +..       ..+.+....+++..+.+.
T Consensus        77 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (389)
T 2gf3_A           77 KETHHKIFTKTGVLVFGPKGESAFVAETMEAAKE-HSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRA  155 (389)
T ss_dssp             HHCSSCCEECCCEEEEEETTCCHHHHHHHHHHHH-TTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHH
T ss_pred             HHhCCcceeecceEEEcCCCchHHHHHHHHHHHH-cCCCcEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHHHHHH
Confidence               1111000     0    0    011111111 11111000         100       011223456788899999


Q ss_pred             HHHHHHHcCcEEecCCccceeEEcCCCcEE----EEEeCCEEEecCCC
Q psy2240         137 LGEQAEAMGVEIYPGIPASEVLYHGDGSVK----GIATGDVGIAKDGS  180 (182)
Q Consensus       137 l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~----~v~~~~~vi~adG~  180 (182)
                      |.+.+++.|++++++++|++++.++++..+    +....+.||.|+|.
T Consensus       156 l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~  203 (389)
T 2gf3_A          156 YRELAEARGAKVLTHTRVEDFDISPDSVKIETANGSYTADKLIVSMGA  203 (389)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTEEEEEEEEEECCGG
T ss_pred             HHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCCEEEeCEEEEecCc
Confidence            999999999999999999999875554322    12345677777774

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.61  E-value=8.9e-15  Score=106.94  Aligned_cols=153  Identities=13%  Similarity=0.036  Sum_probs=86.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC-Cccc-cccccC----hhH----HhhhhhhHHhcC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG-GHIL-SGAVID----PIA----LNELLPDWKDLG   89 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~-g~~~-~~~~~~----~~~----~~~~~~~~~~~~   89 (182)
                      +.++||+|||||++|+++|++|++       |.+|+|||+.+.++ +.+. +++.+.    ...    .......|....
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La~-------G~~V~vlE~~~~~g~~as~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~   79 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLSA-------HGRVVVLEREAQPGYHSTGRSAAHYTVAYGTPQVRALTAASRAFFDNPP   79 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHTT-------TSCEEEECSSSSTTSSGGGSCCCEECSSSSCHHHHHHHHHHHHHHHSCC
T ss_pred             CCcCCEEEECCcHHHHHHHHHHhC-------CCCEEEEECCCCccccccccccceeecccCCHHHHHHHHHHHHHHHHhh
Confidence            346899999999999999999985       89999999997555 3332 222221    111    111122333221


Q ss_pred             CCC-----Cc---------cchhhhH----HHHHhhccCCCCC------------CCC----CCCCCCCccccchHHHHH
Q psy2240          90 APL-----NT---------PVHEDKF----AYLTKSKRIGIPI------------LPG----MPMNNHGNYVVRLGHVVK  135 (182)
Q Consensus        90 ~~~-----~~---------~~~~~~~----~~~~~~~~~~~~~------------~~~----~~~~~~~~~~~~~~~l~~  135 (182)
                      ..+     ..         ......+    .+... .......            +..    ...+.+....+++..+.+
T Consensus        80 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~-~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~  158 (381)
T 3nyc_A           80 AGFCEHPLLSPRPEMVVDFSDDPEELRRQYESGKA-LVPQMRLLDAEQACSIVPVLRRDKVFGATYDPTGADIDTDALHQ  158 (381)
T ss_dssp             TTSCSSCSEEECCEEEECSSCCHHHHHHHHHHHHH-HCTTCEEECHHHHHHHSTTBCGGGCCCEEEETTCEEECHHHHHH
T ss_pred             hhhCCcccccccceEEEechHHHHHHHHHHHHHHH-cCCCcEEeCHHHHHHhCCCcccccceEEEEcCCCceECHHHHHH
Confidence            111     00         0000111    11111 1111111            100    011223355788899999


Q ss_pred             HHHHHHHHcCcEEecCCccceeEEcCCCcEE----EEEeCCEEEecCCC
Q psy2240         136 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVK----GIATGDVGIAKDGS  180 (182)
Q Consensus       136 ~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~----~v~~~~~vi~adG~  180 (182)
                      .|.+.+++.|++|+++++|++|+.+++++.+    +....+.||.|.|.
T Consensus       159 ~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g~i~a~~VV~A~G~  207 (381)
T 3nyc_A          159 GYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAGSYRAAVLVNAAGA  207 (381)
T ss_dssp             HHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSEEEEESEEEECCGG
T ss_pred             HHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCCEEEcCEEEECCCh
Confidence            9999999999999999999999875544222    12334566666664

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.61  E-value=6.3e-15  Score=108.71  Aligned_cols=145  Identities=17%  Similarity=0.200  Sum_probs=78.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccc-ccccChhHH--hhhhhh---HHh---cCCCCC-
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS-GAVIDPIAL--NELLPD---WKD---LGAPLN-   93 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~-~~~~~~~~~--~~~~~~---~~~---~~~~~~-   93 (182)
                      +|+||||||+||++|+.|++      +|++|+||||.+.+...... +-.+.+..+  .+.+..   +..   ...... 
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~------~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~   76 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRK------HGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGG   76 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHh------CCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCc
Confidence            69999999999999999999      89999999998765422111 111223221  111111   110   000000 


Q ss_pred             -ccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----
Q psy2240          94 -TPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----  167 (182)
Q Consensus        94 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----  167 (182)
                       ...............  ..... .........+.++|..|.+.|.+.+   +.+|++++++++++.++++.+..     
T Consensus        77 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~i~R~~L~~~L~~~~---~~~v~~~~~v~~~~~~~~~~v~v~~~dG  150 (412)
T 4hb9_A           77 QSRFYNERMRLLAVHG--GISPM-AGKIISEQRLSISRTELKEILNKGL---ANTIQWNKTFVRYEHIENGGIKIFFADG  150 (412)
T ss_dssp             CCEEECTTSCEEEC-----------------CEEEEEHHHHHHHHHTTC---TTTEECSCCEEEEEECTTSCEEEEETTS
T ss_pred             ceeEecCCcceecccC--Ccccc-ccccccccceEeeHHHHHHHHHhhc---cceEEEEEEEEeeeEcCCCeEEEEECCC
Confidence             000000000000000  00000 0011112245688888988887655   45789999999998766665432     


Q ss_pred             -EEeCCEEEecCCC
Q psy2240         168 -IATGDVGIAKDGS  180 (182)
Q Consensus       168 -v~~~~~vi~adG~  180 (182)
                       ....++||+|||.
T Consensus       151 ~~~~adlvVgADG~  164 (412)
T 4hb9_A          151 SHENVDVLVGADGS  164 (412)
T ss_dssp             CEEEESEEEECCCT
T ss_pred             CEEEeeEEEECCCC
Confidence             2346999999997

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.61  E-value=4.6e-15  Score=107.45  Aligned_cols=124  Identities=24%  Similarity=0.397  Sum_probs=80.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+|||+.+.++|.+..              .|...  ....+   . 
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~------~g~~v~vie~~~~~gg~~~~--------------~~~~~--~~~~~---~-   55 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRR------SGLSYVILDAEASPGGAWQH--------------AWHSL--HLFSP---A-   55 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH------SSCCEEEECCSSSSSGGGGG--------------SCTTC--BCSSC---G-
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH------CCCCEEEEECCCCCCCcccC--------------CCCCc--EecCc---h-
Confidence            35799999999999999999999      89999999999887754321              01000  00000   0 


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcE-EE----EEeCCEEE
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV-KG----IATGDVGI  175 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~-~~----v~~~~~vi  175 (182)
                             ....+   +.++.........++..+.++|.+.+++.|++++++++|+++..+++.+. +.    ....+.||
T Consensus        56 -------~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vV  125 (357)
T 4a9w_A           56 -------GWSSI---PGWPMPASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVI  125 (357)
T ss_dssp             -------GGSCC---SSSCCCCCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSCEEEEEEEE
T ss_pred             -------hhhhC---CCCCCCCCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCCEEEeCEEE
Confidence                   00001   11111122234456778999999999999999999999999987544322 21    23346677


Q ss_pred             ecCCC
Q psy2240         176 AKDGS  180 (182)
Q Consensus       176 ~adG~  180 (182)
                      .|+|.
T Consensus       126 ~AtG~  130 (357)
T 4a9w_A          126 SATGT  130 (357)
T ss_dssp             ECCCS
T ss_pred             ECCCC
Confidence            77773

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.61  E-value=1.1e-14  Score=106.34  Aligned_cols=153  Identities=17%  Similarity=0.218  Sum_probs=85.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccc--cc-ccC---------hhHHhhhhhhHHhcC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS--GA-VID---------PIALNELLPDWKDLG   89 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~--~~-~~~---------~~~~~~~~~~~~~~~   89 (182)
                      ++||+|||||++|+++|++|++      +|.+|+|||+.....+...+  +. .+.         ..........|....
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~------~G~~V~vle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~   75 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATR------AGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLVLRAQMLWDELS   75 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHH------TTCCEEEECSSCSSSSSSSCCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCCCCCCCCccceeeeccCCCchHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999      89999999998765432211  11 111         011112222333221


Q ss_pred             ---C--CCC--c-cc-----hhhhHHHH---HhhccCCCCCC---------CCC-------CCCCCCccccchHHHHHHH
Q psy2240          90 ---A--PLN--T-PV-----HEDKFAYL---TKSKRIGIPIL---------PGM-------PMNNHGNYVVRLGHVVKWL  137 (182)
Q Consensus        90 ---~--~~~--~-~~-----~~~~~~~~---~~~~~~~~~~~---------~~~-------~~~~~~~~~~~~~~l~~~l  137 (182)
                         .  ...  . .+     ....+...   ..........+         +..       ..+.+....+++..+.+.|
T Consensus        76 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~l~~~l  155 (372)
T 2uzz_A           76 RHNEDDPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTW  155 (372)
T ss_dssp             TTCSSSCSEECCCEEEEEETTCHHHHHHHHHHHHTTCCEEEEEHHHHHHHCTTCCCCTTEEEEEESSCEEEEHHHHHHHH
T ss_pred             HhCCCccceeeeceEEEeCCCcHHHHHHHHHHHHcCCCcEecCHHHHHhhCCCccCCCCceEEEeCCCcEEcHHHHHHHH
Confidence               1  000  0 00     00011110   00000110000         000       0122335677888999999


Q ss_pred             HHHHHHcCcEEecCCccceeEEcCCCcEEE----EEeCCEEEecCCC
Q psy2240         138 GEQAEAMGVEIYPGIPASEVLYHGDGSVKG----IATGDVGIAKDGS  180 (182)
Q Consensus       138 ~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----v~~~~~vi~adG~  180 (182)
                      .+.+++.|++++++++|++++.++++..+.    ....+.||.|.|.
T Consensus       156 ~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g~~~a~~vV~a~G~  202 (372)
T 2uzz_A          156 IQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADGEYQAKKAIVCAGT  202 (372)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCEEEEEEEEECCGG
T ss_pred             HHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCCeEEcCEEEEcCCc
Confidence            999999999999999999998755443221    1234667767664

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.61  E-value=1.9e-16  Score=116.47  Aligned_cols=144  Identities=16%  Similarity=0.102  Sum_probs=84.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc-cccccccChhHH--hhhhhhHHhc---CCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH-ILSGAVIDPIAL--NELLPDWKDL---GAPLNTP   95 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~-~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~   95 (182)
                      ++||+|||||++|+++|+.|++      .|++|+||||.+...+. ...++.+.+...  .+.++.+...   .......
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~   75 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHK------AGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGV   75 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH------HTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCE
T ss_pred             CccEEEECCCHHHHHHHHHHHH------CCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceE
Confidence            4799999999999999999999      79999999998742100 111222333221  2222222111   1000000


Q ss_pred             -chhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCC-CcEEE------
Q psy2240          96 -VHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKG------  167 (182)
Q Consensus        96 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~-g~~~~------  167 (182)
                       +....     ....+.+....    .....+.+++..+.+.|.+.+.+.|++|+++++|++++.+++ +..+.      
T Consensus        76 ~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~  146 (394)
T 1k0i_A           76 EIAFAG-----QRRRIDLKRLS----GGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGE  146 (394)
T ss_dssp             EEEETT-----EEEEECHHHHH----TSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTE
T ss_pred             EEEECC-----ceEEecccccc----CCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCc
Confidence             00000     00000000000    011245667888999999999888999999999999986432 23222      


Q ss_pred             --EEeCCEEEecCCC
Q psy2240         168 --IATGDVGIAKDGS  180 (182)
Q Consensus       168 --v~~~~~vi~adG~  180 (182)
                        ....++||+|||.
T Consensus       147 ~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A          147 RLRLDCDYIAGCDGF  161 (394)
T ss_dssp             EEEEECSEEEECCCT
T ss_pred             EEEEEeCEEEECCCC
Confidence              2457999999997

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.60  E-value=1.6e-15  Score=111.84  Aligned_cols=144  Identities=17%  Similarity=0.153  Sum_probs=83.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccc-cCh---hHHhhhhhhHHhc---CCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV-IDP---IALNELLPDWKDL---GAPL   92 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~-~~~---~~~~~~~~~~~~~---~~~~   92 (182)
                      +..+||+|||||++|+++|+.|++      .|++|+||||.+........+.. +.+   ..+.+.++.|...   ....
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~   97 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQ------NGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPM   97 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHT------TTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH------CCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhccc
Confidence            456899999999999999999999      89999999998765432211111 111   1222223332221   1111


Q ss_pred             CccchhhhHHHHHhhccCCCCCC-CCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----
Q psy2240          93 NTPVHEDKFAYLTKSKRIGIPIL-PGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----  167 (182)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----  167 (182)
                      ...+       +........... +.  ........+++..|.+.|.+.+.+  ++|+++++|++++.+++++.+.    
T Consensus        98 ~~~~-------~~~~g~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g  166 (398)
T 2xdo_A           98 GVNI-------ADEKGNILSTKNVKP--ENRFDNPEINRNDLRAILLNSLEN--DTVIWDRKLVMLEPGKKKWTLTFENK  166 (398)
T ss_dssp             CEEE-------ECSSSEEEEECCCGG--GTTSSCCEECHHHHHHHHHHTSCT--TSEEESCCEEEEEECSSSEEEEETTS
T ss_pred             ceEE-------ECCCCCchhhccccc--cCCCCCceECHHHHHHHHHhhcCC--CEEEECCEEEEEEECCCEEEEEECCC
Confidence            1000       000000000000 00  001123468889999999887753  6899999999998765543332    


Q ss_pred             -EEeCCEEEecCCC
Q psy2240         168 -IATGDVGIAKDGS  180 (182)
Q Consensus       168 -v~~~~~vi~adG~  180 (182)
                       ....++||+|||.
T Consensus       167 ~~~~ad~vV~AdG~  180 (398)
T 2xdo_A          167 PSETADLVILANGG  180 (398)
T ss_dssp             CCEEESEEEECSCT
T ss_pred             cEEecCEEEECCCc
Confidence             2345899999997

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.60  E-value=2.9e-15  Score=110.42  Aligned_cols=140  Identities=15%  Similarity=0.115  Sum_probs=81.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHHhcCCCCCccchh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWKDLGAPLNTPVHE   98 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   98 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+||||.+........+-.+.+...  .+.++.+..   ........
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~---~~~~~~~~   74 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRD------AGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELD---SISVPSSS   74 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGG---GTCBCCCE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh------CCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccc---cccccccc
Confidence            35799999999999999999999      89999999998764211111212333222  122221110   00000000


Q ss_pred             hhHHHHHh-hccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCC
Q psy2240          99 DKFAYLTK-SKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGD  172 (182)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~  172 (182)
                        +.++.. .... ...      .......+++..+.+.|.+.+  .+++|+++++|++++.++++..+.     ....+
T Consensus        75 --~~~~~~~~g~~-~~~------~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad  143 (397)
T 2vou_A           75 --MEYVDALTGER-VGS------VPADWRFTSYDSIYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEAN  143 (397)
T ss_dssp             --EEEEETTTCCE-EEE------EECCCCEEEHHHHHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEES
T ss_pred             --eEEEecCCCCc-ccc------ccCcccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECC
Confidence              000000 0000 000      000122456678888888776  589999999999998766554332     24569


Q ss_pred             EEEecCCC
Q psy2240         173 VGIAKDGS  180 (182)
Q Consensus       173 ~vi~adG~  180 (182)
                      +||+|||.
T Consensus       144 ~vV~AdG~  151 (397)
T 2vou_A          144 WVIGADGG  151 (397)
T ss_dssp             EEEECCCT
T ss_pred             EEEECCCc
Confidence            99999997

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.60  E-value=2.7e-15  Score=110.97  Aligned_cols=146  Identities=24%  Similarity=0.294  Sum_probs=85.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCCCCCCccccccccChhHH--hhhhhhHHhc---CCCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWKDL---GAPLN   93 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~   93 (182)
                      +..+||+|||||++|+++|+.|++      .|++ |+||||.+..+.. ..+..+.+..+  .+.++.+...   .....
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~------~G~~~v~v~E~~~~~~~~-g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~   74 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQ------AGIGKVTLLESSSEIRPL-GVGINIQPAAVEALAELGLGPALAATAIPTH   74 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHH------TTCSEEEEEESSSSCCCC-SCEEEECHHHHHHHHHTTCHHHHHHHSEEEC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHh------CCCCeEEEEECCCCcccc-eeEEEEChHHHHHHHHCCChHHHHhhCCCcc
Confidence            345899999999999999999999      8999 9999998765431 12222333222  1222222211   10000


Q ss_pred             ccchhhhHHHHHhhcc--CCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cC-cEEecCCccceeEEcCCCcEEE--
Q psy2240          94 TPVHEDKFAYLTKSKR--IGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MG-VEIYPGIPASEVLYHGDGSVKG--  167 (182)
Q Consensus        94 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~g-v~i~~~~~v~~i~~~~~g~~~~--  167 (182)
                      ..      .+......  ...+. .....+....+.+++..|.+.|.+.+++ .| ++|+++++|++++. +++..+.  
T Consensus        75 ~~------~~~~~~g~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~  146 (410)
T 3c96_A           75 EL------RYIDQSGATVWSEPR-GVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGA  146 (410)
T ss_dssp             EE------EEECTTSCEEEEEEC-GGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEE
T ss_pred             eE------EEEcCCCCEEeeccC-CccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEe
Confidence            00      00000000  00000 0000011224678999999999999976 46 58999999999987 5554332  


Q ss_pred             --------EEeCCEEEecCCC
Q psy2240         168 --------IATGDVGIAKDGS  180 (182)
Q Consensus       168 --------v~~~~~vi~adG~  180 (182)
                              ....++||+|||.
T Consensus       147 ~~~~g~~~~~~ad~vV~AdG~  167 (410)
T 3c96_A          147 RDGHGKPQALGADVLVGADGI  167 (410)
T ss_dssp             EETTSCEEEEEESEEEECCCT
T ss_pred             cCCCCCceEEecCEEEECCCc
Confidence                    2345899999997

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.59  E-value=1.7e-14  Score=103.32  Aligned_cols=111  Identities=17%  Similarity=0.236  Sum_probs=70.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCC--CceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGK--ELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHE   98 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~--g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (182)
                      .++||+|||||++|+++|+.|++      .  |++|+|||+.+.+++..+.++.....                 .....
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~------~~~G~~V~LiEk~~~~GGg~~~~g~~~~~-----------------~~~~~  134 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLST------LRPDLRITIVEAGVAPGGGAWLGGQLFSA-----------------MVMRK  134 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHH------HCTTSCEEEEESSSSCCTTTTCCBTTCCC-----------------EEEET
T ss_pred             CcCCEEEECccHHHHHHHHHHHh------cCCCCEEEEEeCCCccCCccccCCccchh-----------------hhcch
Confidence            35899999999999999999999      5  89999999998776543322111000                 00011


Q ss_pred             hhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcC
Q psy2240          99 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHG  161 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~  161 (182)
                      ....++.... ..+.....+      ....+...+.+.|.+.+.+ .|++++++++|+++..++
T Consensus       135 ~~~~~L~~~G-v~~~~~G~~------~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~  191 (344)
T 3jsk_A          135 PADVFLDEVG-VPYEDEGDY------VVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRK  191 (344)
T ss_dssp             TTHHHHHHHT-CCCEECSSE------EEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEE
T ss_pred             HHHHHHHHcC-CcccccCCe------EEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC
Confidence            2223332211 111110000      1122356788899998887 599999999999997754

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.59  E-value=3.9e-14  Score=107.12  Aligned_cols=123  Identities=24%  Similarity=0.252  Sum_probs=80.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHh--hhhhhHHhcCCCCCccchh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALN--ELLPDWKDLGAPLNTPVHE   98 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   98 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+|||+.+..++...  ..+.+..+.  ..++.+...          
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~------~G~~V~liEk~~~~g~~~~--~~~~~~~~~~l~~~g~~~~~----------  152 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELAL------LGARVVLVEKRIKFSRHNV--LHLWPFTIHDLRALGAKKFY----------  152 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESCSSCCCCCE--EECCHHHHHHHHTTTHHHHC----------
T ss_pred             CCCCEEEECccHHHHHHHHHHHH------CCCeEEEEEeccccCCCCc--ccCChhHHHHHHHcCCcccc----------
Confidence            45799999999999999999999      8999999999987653211  111121111  111111100          


Q ss_pred             hhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC---CCcEEEE-------
Q psy2240          99 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG---DGSVKGI-------  168 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~---~g~~~~v-------  168 (182)
                               ..+.          ......+++..+.+.|.+.+++.|++|+++++|+++..++   ++..+.+       
T Consensus       153 ---------~~~~----------~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~  213 (497)
T 2bry_A          153 ---------GRFC----------TGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQ  213 (497)
T ss_dssp             ---------TTTT----------CTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHH
T ss_pred             ---------cccc----------ccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCC
Confidence                     0000          0012356778999999999998999999999999998642   2223322       


Q ss_pred             ---EeCCEEEecCCC
Q psy2240         169 ---ATGDVGIAKDGS  180 (182)
Q Consensus       169 ---~~~~~vi~adG~  180 (182)
                         ...++||.|+|.
T Consensus       214 ~~~i~ad~VV~A~G~  228 (497)
T 2bry_A          214 LASYEFDVLISAAGG  228 (497)
T ss_dssp             HHTCCBSEEEECCCT
T ss_pred             EEEEEcCEEEECCCC
Confidence               124789999886

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.58  E-value=1.7e-14  Score=112.16  Aligned_cols=154  Identities=16%  Similarity=0.137  Sum_probs=88.3

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH--hhhhhhHHh---cCCCC
Q psy2240          18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NELLPDWKD---LGAPL   92 (182)
Q Consensus        18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~---~~~~~   92 (182)
                      .+..++||+|||||++|+++|+.|++.     +|++|+||||.+..... ..+..+.+..+  .+.++.+..   .....
T Consensus        28 ~~~~~~dVlIVGaGpaGL~~A~~La~~-----~G~~V~viEr~~~~~~~-g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~  101 (639)
T 2dkh_A           28 AVPSQVDVLIVGCGPAGLTLAAQLAAF-----PDIRTCIVEQKEGPMEL-GQADGIACRTMEMFEAFEFADSILKEACWI  101 (639)
T ss_dssp             SCCSEEEEEEECCSHHHHHHHHHHTTC-----TTSCEEEECSSSSCCSS-CSCCEECHHHHHHHHHTTCHHHHHHHSEEE
T ss_pred             CCCCCCcEEEECcCHHHHHHHHHHHHh-----CCCCEEEEeCCCCCCCC-CceeeeCHHHHHHHHHcCcHHHHHHhcccc
Confidence            334568999999999999999999871     38999999998765432 22223333322  222222211   11000


Q ss_pred             Ccc-chhhh---HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCc--EEecCCccceeEEcCC----
Q psy2240          93 NTP-VHEDK---FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGD----  162 (182)
Q Consensus        93 ~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv--~i~~~~~v~~i~~~~~----  162 (182)
                      ... +....   ...+.....  ++.. ...........+++..+.+.|.+.+++.|+  +|+++++|++++.+++    
T Consensus       102 ~~~~~~~~~~~~~g~~~~~~~--~~~~-~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~  178 (639)
T 2dkh_A          102 NDVTFWKPDPGQPGRIARHGR--VQDT-EDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADY  178 (639)
T ss_dssp             CEEEEEEECTTSTTCEEEEEE--EESS-CTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSC
T ss_pred             cceEEECCCCCCCcceEeecc--cCcc-cCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcC
Confidence            000 00000   000000000  0000 001111224578999999999999999877  9999999999987653    


Q ss_pred             CcEEEE-------------EeCCEEEecCCC
Q psy2240         163 GSVKGI-------------ATGDVGIAKDGS  180 (182)
Q Consensus       163 g~~~~v-------------~~~~~vi~adG~  180 (182)
                      +..+.+             ...++||+|||+
T Consensus       179 ~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~  209 (639)
T 2dkh_A          179 PVTVTLERCDAAHAGQIETVQARYVVGCDGA  209 (639)
T ss_dssp             CEEEEEEECSGGGTTCEEEEEEEEEEECCCT
T ss_pred             CEEEEEEeccccCCCCeEEEEeCEEEECCCc
Confidence            222222             235899999997

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.58  E-value=6.5e-14  Score=107.83  Aligned_cols=142  Identities=18%  Similarity=0.166  Sum_probs=80.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-c-cccc---C---hhHHhhhhhhHHhcCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-S-GAVI---D---PIALNELLPDWKDLGAP   91 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~-~~~~---~---~~~~~~~~~~~~~~~~~   91 (182)
                      +.++||+|||||++|+++|+.|++      .|.+|+||||.+..++.+. + ++..   .   .......+.+....+..
T Consensus         5 ~~~~DVvVVGaG~AGl~AA~~la~------~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~   78 (588)
T 2wdq_A            5 VREFDAVVIGAGGAGMRAALQISQ------SGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDY   78 (588)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTT
T ss_pred             cccCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCC
Confidence            456899999999999999999999      8999999999987654432 2 2211   1   11111111111111111


Q ss_pred             CCccc--------hhhhHHHHHhhccCCCCCCCCCCCC--CCCcc----------------ccchHHHHHHHHHHHHHcC
Q psy2240          92 LNTPV--------HEDKFAYLTKSKRIGIPILPGMPMN--NHGNY----------------VVRLGHVVKWLGEQAEAMG  145 (182)
Q Consensus        92 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----------------~~~~~~l~~~l~~~~~~~g  145 (182)
                      +.+..        ....+.|+... ...+.........  ..++.                ......+.+.|.+.+++.|
T Consensus        79 ~~d~~~v~~~~~~~~~~i~~l~~~-Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~g  157 (588)
T 2wdq_A           79 IGDQDAIEYMCKTGPEAILELEHM-GLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNH  157 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHT-TCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHhHHHHHHHHHHc-CCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            11110        11233444322 2222211110000  00000                0123678899999998899


Q ss_pred             cEEecCCccceeEEcCCCcEEEE
Q psy2240         146 VEIYPGIPASEVLYHGDGSVKGI  168 (182)
Q Consensus       146 v~i~~~~~v~~i~~~~~g~~~~v  168 (182)
                      ++|+++++|+++..++++.+.++
T Consensus       158 v~i~~~~~v~~L~~~~~g~v~Gv  180 (588)
T 2wdq_A          158 TTIFSEWYALDLVKNQDGAVVGC  180 (588)
T ss_dssp             CEEEETEEEEEEEECTTSCEEEE
T ss_pred             CEEEeCcEEEEEEECCCCEEEEE
Confidence            99999999999987545655554

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.57  E-value=3.4e-14  Score=107.92  Aligned_cols=55  Identities=25%  Similarity=0.318  Sum_probs=46.5

Q ss_pred             ccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE-------EeCCEEEecCCC
Q psy2240         125 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-------ATGDVGIAKDGS  180 (182)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v-------~~~~~vi~adG~  180 (182)
                      .+.+++..+.+.|.+.+++.|++++++ +|+++..++++.++++       ...++||+|+|.
T Consensus       167 ~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~  228 (511)
T 2weu_A          167 AYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGF  228 (511)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGG
T ss_pred             eEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCc
Confidence            578999999999999999999999999 9999987666654443       456899999996

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.57  E-value=3.7e-14  Score=100.06  Aligned_cols=109  Identities=21%  Similarity=0.394  Sum_probs=69.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCC-CceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGK-ELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      .++||+|||||++|+++|+.|++      + |.+|+|||+.+.+++..+..+.....     +            .....
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~------~~G~~V~viEk~~~~gg~~~~~~~~~~~-----~------------~~~~~   94 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISK------NPNVQVAIIEQSVSPGGGAWLGGQLFSA-----M------------IVRKP   94 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHT------STTSCEEEEESSSSCCTTTTCCSTTCCC-----E------------EEETT
T ss_pred             cccCEEEECccHHHHHHHHHHHH------cCCCeEEEEECCCCCCCceecCCcchHH-----H------------HcCcH
Confidence            45799999999999999999999      7 99999999998776543322111000     0            00011


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccc--cchHHHHHHHHHHHHH-cCcEEecCCccceeEEcC
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYV--VRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHG  161 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~  161 (182)
                      ...++... ...+..        .+.+.  .++..+...|.+.+.+ .|++++++++|+++..++
T Consensus        95 ~~~~l~~~-G~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~  150 (284)
T 1rp0_A           95 AHLFLDEI-GVAYDE--------QDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG  150 (284)
T ss_dssp             THHHHHHH-TCCCEE--------CSSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEET
T ss_pred             HHHHHHHc-CCCccc--------CCCEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecC
Confidence            12233221 111111        11222  2567788888888866 699999999999998643

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.56  E-value=4.2e-14  Score=100.73  Aligned_cols=117  Identities=21%  Similarity=0.365  Sum_probs=73.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCC--CceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGK--ELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~--g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      ++||+|||||++|+++|+.|++      .  |.+|+|+|+.+..++..+.++.....                 ......
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~------~~~g~~V~v~e~~~~~ggg~~~~g~~~~~-----------------~~~~~~  121 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAK------NRPDLKVCIIESSVAPGGGSWLGGQLFSA-----------------MVMRKP  121 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHH------HCTTSCEEEECSSSSCCTTTTCCGGGCCC-----------------EEEETT
T ss_pred             cCCEEEECccHHHHHHHHHHHh------cCCCCeEEEEecCccccccccccCcccch-----------------hhhhhH
Confidence            4699999999999999999999      5  89999999998887644322211100                 001112


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcC--C-C--cEEEE
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHG--D-G--SVKGI  168 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~--~-g--~~~~v  168 (182)
                      ...++.... ..+..  .    .......+...+...|.+.+.+ .|++++++++|+++..++  + +  ++.|+
T Consensus       122 ~~~~L~~~G-v~~~~--~----g~~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GV  189 (326)
T 2gjc_A          122 AHLFLQELE-IPYED--E----GDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGV  189 (326)
T ss_dssp             THHHHHHTT-CCCEE--C----SSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEE
T ss_pred             HHHHHHhhC-ccccc--C----CCeEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEE
Confidence            222332211 11111  0    0001122456788889998887 499999999999998753  3 4  56554

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.56  E-value=5.3e-15  Score=109.28  Aligned_cols=152  Identities=16%  Similarity=0.110  Sum_probs=83.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCC--CceEEEEecCCCCCCccc-ccc-cc-Ch--------hHHhhhhhhHHhc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGK--ELKVCLVEKAAEVGGHIL-SGA-VI-DP--------IALNELLPDWKDL   88 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~--g~~v~vlE~~~~~~g~~~-~~~-~~-~~--------~~~~~~~~~~~~~   88 (182)
                      ++||+|||||++|+++|+.|++      +  |++|+|||+.....+.+. +++ .+ ..        ......+..|...
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~------~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~  109 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQ------LAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGA  109 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH------HCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTG
T ss_pred             cCCEEEECCcHHHHHHHHHHHh------cCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHH
Confidence            5899999999999999999999      7  999999999865554432 222 12 11        1111122233321


Q ss_pred             -CC----CCCc--------------cchhhhHHHHHhhcc--CCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcE
Q psy2240          89 -GA----PLNT--------------PVHEDKFAYLTKSKR--IGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVE  147 (182)
Q Consensus        89 -~~----~~~~--------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~  147 (182)
                       +.    .+..              .+.............  ...+... ...+.+....+++..+.+.|.+.+++.|++
T Consensus       110 ~~~~~~~~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~  188 (405)
T 3c4n_A          110 LGSGKTLEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLP-VARVDPRALTYRPGSLALLAAQQAIGQGAG  188 (405)
T ss_dssp             GGSSCCCCEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSC-EEEEETTCEEECHHHHHHHHHHHHHTTTCE
T ss_pred             hCCCCCCcEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcce-EEEEcCCCEEEcHHHHHHHHHHHHHHCCCE
Confidence             00    0000              000000000000000  0000000 001223355778899999999999999999


Q ss_pred             EecCCccc---------eeEEcCCCcEE----EEEeCCEEEecCCC
Q psy2240         148 IYPGIPAS---------EVLYHGDGSVK----GIATGDVGIAKDGS  180 (182)
Q Consensus       148 i~~~~~v~---------~i~~~~~g~~~----~v~~~~~vi~adG~  180 (182)
                      ++++++|+         ++..++++..+    +....+.||.|+|.
T Consensus       189 i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g~i~a~~VV~A~G~  234 (405)
T 3c4n_A          189 LLLNTRAELVPGGVRLHRLTVTNTHQIVVHETRQIRAGVIIVAAGA  234 (405)
T ss_dssp             EECSCEEEEETTEEEEECBCC-------CBCCEEEEEEEEEECCGG
T ss_pred             EEcCCEEEeccccccccceEeeCCeEEEEECCcEEECCEEEECCCc
Confidence            99999999         88754332211    23445778888875

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.56  E-value=5.1e-14  Score=107.58  Aligned_cols=56  Identities=18%  Similarity=0.183  Sum_probs=46.4

Q ss_pred             CccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE-------EeCCEEEecCCC
Q psy2240         124 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-------ATGDVGIAKDGS  180 (182)
Q Consensus       124 ~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v-------~~~~~vi~adG~  180 (182)
                      ..+.+++..+.+.|.+.+++.|++++++ +|+++..++++.++++       ...++||+|+|.
T Consensus       158 ~~~~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~  220 (538)
T 2aqj_A          158 HAWHFDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGM  220 (538)
T ss_dssp             CEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGG
T ss_pred             ccEEEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCC
Confidence            3678999999999999999999999999 8999987666654443       346899999996

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.56  E-value=5.9e-14  Score=112.11  Aligned_cols=153  Identities=18%  Similarity=0.225  Sum_probs=86.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCC--CCccc-cccccCh----h----HHhhhhhhHHhc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEV--GGHIL-SGAVIDP----I----ALNELLPDWKDL   88 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~--~g~~~-~~~~~~~----~----~~~~~~~~~~~~   88 (182)
                      .++||+|||||++|+++|++|++      +|. +|+|||+....  ++.+. +.+.+..    .    ........|...
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~------~G~~~V~vlE~~~~~~~~gss~~~~G~~~~~~~~~~~~~l~~~s~~~~~~l   76 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVT------RGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSL   76 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHH------TTCCCEEEECSSCTTCCCSGGGTCCCEECCCCSCHHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh------CCCCcEEEEeCCCCCCCcccceeCCceeecCCCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999      898 99999998753  33322 2222211    0    111112223332


Q ss_pred             CCCC------Ccc----chhhhHHHHH------hhccCCCCCC---------CCC-------CCCCCCccccchHHHHHH
Q psy2240          89 GAPL------NTP----VHEDKFAYLT------KSKRIGIPIL---------PGM-------PMNNHGNYVVRLGHVVKW  136 (182)
Q Consensus        89 ~~~~------~~~----~~~~~~~~~~------~~~~~~~~~~---------~~~-------~~~~~~~~~~~~~~l~~~  136 (182)
                      ....      ...    .....+..+.      .........+         +..       ..+.+....+++..+...
T Consensus        77 ~~~~~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~G~~~~~l~~~e~~~~~p~l~~~~~~gg~~~~~~g~v~p~~l~~~  156 (830)
T 1pj5_A           77 TEDGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQL  156 (830)
T ss_dssp             EETTEESEECCCEEEEESSHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHH
T ss_pred             HhhCCCCeeecCcEEEEeCHHHHHHHHHHHHHHHHcCCCeEEECHHHHHHhCccCCccceEEEEEECCCceEcHHHHHHH
Confidence            1000      000    0011111110      0001111100         000       011223556788999999


Q ss_pred             HHHHHHHcCcEEecCCccceeEEcCCCcEEEE------EeCCEEEecCCC
Q psy2240         137 LGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI------ATGDVGIAKDGS  180 (182)
Q Consensus       137 l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------~~~~~vi~adG~  180 (182)
                      |.+.+++.|++|+++++|++|+.++ +.+.+|      +.++.||.|.|.
T Consensus       157 L~~~a~~~Gv~i~~~t~V~~i~~~~-~~v~~V~t~~G~i~Ad~VV~AaG~  205 (830)
T 1pj5_A          157 LIKRTESAGVTYRGSTTVTGIEQSG-GRVTGVQTADGVIPADIVVSCAGF  205 (830)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEETTEEEECSEEEECCGG
T ss_pred             HHHHHHHcCCEEECCceEEEEEEeC-CEEEEEEECCcEEECCEEEECCcc
Confidence            9999999999999999999998744 444333      345777777775

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.55  E-value=2.2e-14  Score=109.88  Aligned_cols=42  Identities=24%  Similarity=0.411  Sum_probs=37.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      .++||+|||||++|+++|+.|++      +|++|+|||+.+..+|.+.
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~------~G~~V~LlEk~d~~~GtS~   58 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQV------RGIQTGLVEMNDFASGTSS   58 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHT------TTCCEEEEESSSTTCSGGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh------CCCcEEEEECCCCCCCccc
Confidence            46899999999999999999999      8999999999976666543

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.55  E-value=1.7e-13  Score=104.44  Aligned_cols=55  Identities=18%  Similarity=0.362  Sum_probs=45.6

Q ss_pred             ccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEE-------EeCCEEEecCCC
Q psy2240         125 NYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGI-------ATGDVGIAKDGS  180 (182)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v-------~~~~~vi~adG~  180 (182)
                      .+.+++..+.+.|.+.+++ .|++++++ +|+++..++++.++++       ...++||+|||.
T Consensus       169 ~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~  231 (526)
T 2pyx_A          169 GYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGA  231 (526)
T ss_dssp             EEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGG
T ss_pred             eEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCc
Confidence            5789999999999999998 89999999 6999987656654433       346899999996

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.54  E-value=1.7e-13  Score=105.94  Aligned_cols=143  Identities=16%  Similarity=0.115  Sum_probs=81.0

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-ccccc-C------hhHHhhhhhhHHhcC
Q psy2240          18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVI-D------PIALNELLPDWKDLG   89 (182)
Q Consensus        18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~-~------~~~~~~~~~~~~~~~   89 (182)
                      .++.++||||||||++|+++|+.|++      .|.+|+||||.+..++.+. +.+.+ .      .......+.+....+
T Consensus        14 ~~~~~~DVvVVG~G~AGl~AAl~aa~------~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g   87 (621)
T 2h88_A           14 VVDHEFDAVVVGAGGAGLRAAFGLSE------AGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGS   87 (621)
T ss_dssp             EEEEEEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHT
T ss_pred             cccccCCEEEECccHHHHHHHHHHHH------CCCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhc
Confidence            34567899999999999999999999      8999999999976655432 22211 1      111111211111112


Q ss_pred             CCCCccc--------hhhhHHHHHhhccCCCCCCCCCCCC--CCCc--------------c---ccchHHHHHHHHHHHH
Q psy2240          90 APLNTPV--------HEDKFAYLTKSKRIGIPILPGMPMN--NHGN--------------Y---VVRLGHVVKWLGEQAE  142 (182)
Q Consensus        90 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------------~---~~~~~~l~~~l~~~~~  142 (182)
                      ..+.+..        ....+.|+... ...+.........  ..++              .   ......+...|.+.++
T Consensus        88 ~~l~d~~~v~~l~~~s~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~  166 (621)
T 2h88_A           88 DWLGDQDAIHYMTEQAPAAVIELENY-GMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSL  166 (621)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHH
Confidence            1221111        11233444332 2222211110000  0000              0   0134578999999998


Q ss_pred             HcCcEEecCCccceeEEcCCCcEEEE
Q psy2240         143 AMGVEIYPGIPASEVLYHGDGSVKGI  168 (182)
Q Consensus       143 ~~gv~i~~~~~v~~i~~~~~g~~~~v  168 (182)
                      +.|++|++++.|+++..+ ++.+.++
T Consensus       167 ~~gv~i~~~~~v~~Li~~-~g~v~Gv  191 (621)
T 2h88_A          167 RYDTSYFVEYFALDLLME-NGECRGV  191 (621)
T ss_dssp             TSCCEEEETEEEEEEEEE-TTEEEEE
T ss_pred             hCCCEEEEceEEEEEEEE-CCEEEEE
Confidence            899999999999999863 4555543

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.54  E-value=1.9e-13  Score=103.61  Aligned_cols=41  Identities=22%  Similarity=0.393  Sum_probs=35.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      .++||+|||||++|+++|+.|++      +|++|+|||+.....|.+
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~------~G~~V~llE~~~~~~gtS   42 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAG------RGLSVLMLEAQDLACATS   42 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSTTCSGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh------CCCCEEEEECCCCCCCcc
Confidence            35899999999999999999999      899999999987655544

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.54  E-value=7.6e-15  Score=114.44  Aligned_cols=135  Identities=16%  Similarity=0.191  Sum_probs=77.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHHhcC---CCCCcc-
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWKDLG---APLNTP-   95 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~-   95 (182)
                      ++||+||||||+||++|+.|++... +..|++|+||||.+..... ..+..+.+..  +.+.++.|....   ...... 
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~-~~~Gi~v~viE~~~~~~~~-gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~   85 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVR-QKPDLKVRIIDKRSTKVYN-GQADGLQCRTLESLKNLGLADKILSEANDMSTIA   85 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHH-HSTTCCEEEECSSSSCCCS-CSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHhcccc-ccCCCCEEEEeCCCCCCCC-CceeEEChHHHHHHHHCCCHHHHHHhccccceEE
Confidence            5799999999999999999998211 1138999999998754321 1222333333  333344443321   111110 


Q ss_pred             chhhh-HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC---cEEecCCccceeEEcC
Q psy2240          96 VHEDK-FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG---VEIYPGIPASEVLYHG  161 (182)
Q Consensus        96 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g---v~i~~~~~v~~i~~~~  161 (182)
                      +.... ...+.....+....   ..........+++..+.+.|.+.+++.|   ++|++++++++++.++
T Consensus        86 ~~~~~~~g~i~~~~~~~~~~---~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~  152 (665)
T 1pn0_A           86 LYNPDENGHIRRTDRIPDTL---PGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDS  152 (665)
T ss_dssp             EEEECTTSCEEEEEEEESSC---TTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECG
T ss_pred             EEeCCCCcceEeecccCccc---CCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecC
Confidence            00000 00000000000000   0111222567899999999999998876   8999999999998754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.54  E-value=3.2e-13  Score=105.00  Aligned_cols=42  Identities=29%  Similarity=0.442  Sum_probs=36.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      +.++||||||||++|+++|+.|++      .|.+|+||||.+..++.+
T Consensus         3 ~~~~DVvVIGgG~AGL~AAl~aae------~G~~V~vlEK~~~~~g~s   44 (660)
T 2bs2_A            3 VQYCDSLVIGGGLAGLRAAVATQQ------KGLSTIVLSLIPVKRSHS   44 (660)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHT------TTCCEEEECSSCGGGSGG
T ss_pred             cccccEEEECchHHHHHHHHHHHH------CCCcEEEEeccCCCCCcc
Confidence            346899999999999999999999      899999999998665443

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.54  E-value=1.8e-13  Score=106.34  Aligned_cols=142  Identities=18%  Similarity=0.146  Sum_probs=79.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCC------CceEEEEecCCCCCCcccccc--cc----ChhHHhhhhhhHHh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGK------ELKVCLVEKAAEVGGHILSGA--VI----DPIALNELLPDWKD   87 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~------g~~v~vlE~~~~~~g~~~~~~--~~----~~~~~~~~~~~~~~   87 (182)
                      ..++||||||||++||++|+.|++      .      |.+|+||||.+..++.+.+.+  .+    ........+.....
T Consensus        20 ~~~~DVvVVG~G~AGL~AAl~aa~------~~~~~~pG~~V~vleK~~~~~s~s~AqG~~gi~a~l~~ds~e~~~~~~~~   93 (662)
T 3gyx_A           20 EHSVDLLMVGGGMGNCGAAFEAVR------WADKYAPEAKILLVDKASLERSGAVAQGLSAINTYLGDNNADDYVRMVRT   93 (662)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHH------HHHHHCTTCCEEEECSSCTTTCSTTTTCEEEECCCCTTSCHHHHHHHHHH
T ss_pred             eEEcCEEEECCCHHHHHHHHHHHh------hccccCCCCcEEEEEecCCCCCcccccCcchheeecCCCCHHHHHHHHHH
Confidence            346899999999999999999998      5      899999999876554433333  21    11111111111111


Q ss_pred             cCCCCCccc--------hhhhHHHHHhhccCCCCCC-CCC-------------------CCCCCC--ccccchHHHHHHH
Q psy2240          88 LGAPLNTPV--------HEDKFAYLTKSKRIGIPIL-PGM-------------------PMNNHG--NYVVRLGHVVKWL  137 (182)
Q Consensus        88 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~-------------------~~~~~~--~~~~~~~~l~~~l  137 (182)
                      ....+.+..        ....+.++...+ ..+... .+.                   ......  ...+....+.+.|
T Consensus        94 ~~~gl~d~~~v~~l~~~a~~~i~~L~~~G-v~f~~~~~~G~~~~g~~~~~fg~~~~~gg~~~~r~~~~~~~~G~~i~~~L  172 (662)
T 3gyx_A           94 DLMGLVREDLIYDLGRHVDDSVHLFEEWG-LPVWIKDEHGHNLDGAQAKAAGKSLRNGDKPVRSGRWQIMINGESYKVIV  172 (662)
T ss_dssp             HTTTCCCHHHHHHHHHHHHHHHHHHHHHT-CCBCEECSSSCEECHHHHHHHTCCTTTTCCBCCSSTTCEEEEETSHHHHH
T ss_pred             hcCCCccHHHHHHHHHHHHHHHHHHHHcC-CCceecCCCCccccchhhhccccccccCccccccceecccCCHHHHHHHH
Confidence            111121111        112233333211 112111 000                   000000  1234456788899


Q ss_pred             HHHHHHc--CcEEecCCccceeEEcCC--CcEEEE
Q psy2240         138 GEQAEAM--GVEIYPGIPASEVLYHGD--GSVKGI  168 (182)
Q Consensus       138 ~~~~~~~--gv~i~~~~~v~~i~~~~~--g~~~~v  168 (182)
                      .+.+++.  |++|++++.|+++..+++  +++.|+
T Consensus       173 ~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv  207 (662)
T 3gyx_A          173 AEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGA  207 (662)
T ss_dssp             HHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEE
T ss_pred             HHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEE
Confidence            9999887  999999999999987554  366654

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.53  E-value=4.6e-13  Score=104.17  Aligned_cols=143  Identities=24%  Similarity=0.221  Sum_probs=78.7

Q ss_pred             ccccccEEEECCChHHHHHHHHHH----HhhhhcCCCceEEEEecCCCCCCccccccc------cC-------hhHHhhh
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLK----QLAEKDGKELKVCLVEKAAEVGGHILSGAV------ID-------PIALNEL   81 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~----~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~------~~-------~~~~~~~   81 (182)
                      ...++||||||||++|+++|+.|+    +      .|.+|+||||.+..++...+++.      +.       .......
T Consensus        19 ~~~~~DVvVIG~G~AGl~AAl~aa~~~~~------~G~~V~vlEK~~~~~s~~~a~G~~~~~~~~~~~~~~g~~ds~~~~   92 (643)
T 1jnr_A           19 EVVETDILIIGGGFSGCGAAYEAAYWAKL------GGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDY   92 (643)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHHHHHTT------TTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHH
T ss_pred             eeccCCEEEECcCHHHHHHHHHHhhhhhh------CCCeEEEEeCcCCCCCcceecccccccchhhHHHhcCCCCCHHHH
Confidence            345789999999999999999999    4      58999999999754322222221      10       0111122


Q ss_pred             hhhHHhcCCCCCccc--------hhhhHHHHHhhccCCCCCCCCCCCCCCC--ccccchHHHHHHHHHHHHHc-Cc-EEe
Q psy2240          82 LPDWKDLGAPLNTPV--------HEDKFAYLTKSKRIGIPILPGMPMNNHG--NYVVRLGHVVKWLGEQAEAM-GV-EIY  149 (182)
Q Consensus        82 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~-gv-~i~  149 (182)
                      +.+.......+.+..        ....+.|+... ...+....+......+  ...+++..+.+.|.+.+++. |+ +|+
T Consensus        93 ~~~~~~~g~~l~d~~~v~~~~~~~~~~i~~l~~~-Gv~f~~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~gv~~i~  171 (643)
T 1jnr_A           93 VRYVTLDMMGLAREDLVADYARHVDGTVHLFEKW-GLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIY  171 (643)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT-TCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHHHHHHCGGGEE
T ss_pred             HHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHc-CCcceeCCCCCccCCCccccCCCcHHHHHHHHHHHHhcCCCcEEE
Confidence            222222222222210        11233344332 1222111111111111  11234556788888888887 99 999


Q ss_pred             cCCccceeEEcCC--CcEEEE
Q psy2240         150 PGIPASEVLYHGD--GSVKGI  168 (182)
Q Consensus       150 ~~~~v~~i~~~~~--g~~~~v  168 (182)
                      +++.|+++..+++  +.+.|+
T Consensus       172 ~~~~v~~L~~~~~~~g~v~Gv  192 (643)
T 1jnr_A          172 ERVFIFELLKDNNDPNAVAGA  192 (643)
T ss_dssp             CSEEEEEEEECTTCTTBEEEE
T ss_pred             ecCEEEEEEEcCCccceeEEE
Confidence            9999999987543  266553

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.53  E-value=1.1e-13  Score=99.58  Aligned_cols=92  Identities=26%  Similarity=0.314  Sum_probs=64.2

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC----CCCCccccccccChhHHhhhhhhHHhcCCCCCc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA----EVGGHILSGAVIDPIALNELLPDWKDLGAPLNT   94 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (182)
                      ..+.+||+|||||++|+++|+.|++      .|++|+|||+.+    .++|....                  ..     
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~------~g~~v~vie~~~~~~~~~gg~~~~------------------~~-----   69 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLAR------AEIKPILYEGMMANGIAAGGQLTT------------------TT-----   69 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHH------TTCCCEEECCSSBTTBCTTCGGGG------------------SS-----
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHH------CCCCEEEEecCCCCCCCcCccccc------------------ch-----
Confidence            3456899999999999999999999      899999999965    23321110                  00     


Q ss_pred             cchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCC
Q psy2240          95 PVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD  162 (182)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~  162 (182)
                                   ....++.+         ...+.+..+...+.+.+++.|++++.++ |+++..+.+
T Consensus        70 -------------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~  114 (338)
T 3itj_A           70 -------------EIENFPGF---------PDGLTGSELMDRMREQSTKFGTEIITET-VSKVDLSSK  114 (338)
T ss_dssp             -------------EECCSTTC---------TTCEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSSS
T ss_pred             -------------hhcccCCC---------cccCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCC
Confidence                         00001000         1234567889999999999999999988 999876443

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.52  E-value=3.5e-13  Score=103.58  Aligned_cols=140  Identities=26%  Similarity=0.343  Sum_probs=80.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-h-----------hHHhhhhhhHHh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-P-----------IALNELLPDWKD   87 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-~-----------~~~~~~~~~~~~   87 (182)
                      ..+||+|||+|++|+++|+.|++      .|.+|+|||+.+..++.+. +++.+. .           .....++.++..
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~------~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~  198 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARD------AGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMK  198 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHS------SSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHH
Confidence            35799999999999999999999      8999999999998876653 222210 0           011111222222


Q ss_pred             cCCCCCccc--------hhhhHHHHHhhccCCCCCC---CCCCCC---CCCccccchHHHHHHHHHHHHHcCcEEecCCc
Q psy2240          88 LGAPLNTPV--------HEDKFAYLTKSKRIGIPIL---PGMPMN---NHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIP  153 (182)
Q Consensus        88 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~  153 (182)
                      .+....+..        ....+.|+... ...+...   ......   ...........+...|.+.+++.|++|+++++
T Consensus       199 ~g~~~~~~~~v~~~~~~~~~~i~~l~~~-Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~  277 (572)
T 1d4d_A          199 GGRNINDPELVKVLANNSSDSIDWLTSM-GADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSR  277 (572)
T ss_dssp             HTTTCSCHHHHHHHHHTHHHHHHHHHHH-TCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEE
T ss_pred             hcCCCCCHHHHHHHHHccHHHHHHHHhc-CCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCE
Confidence            221111110        11233444332 2222111   110000   00011134668999999999999999999999


Q ss_pred             cceeEEcCCCcEEE
Q psy2240         154 ASEVLYHGDGSVKG  167 (182)
Q Consensus       154 v~~i~~~~~g~~~~  167 (182)
                      |++|..++++.+.+
T Consensus       278 v~~l~~~~~g~v~G  291 (572)
T 1d4d_A          278 VVRILEDASGKVTG  291 (572)
T ss_dssp             EEEEEEC--CCEEE
T ss_pred             EEEEEECCCCeEEE
Confidence            99998744255443

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.52  E-value=1.8e-13  Score=93.84  Aligned_cols=114  Identities=23%  Similarity=0.290  Sum_probs=73.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      +++||+|||||++|+.+|+.|++      .|.+|+|||+.....| .......         .       ...   ....
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~------~g~~v~lie~~~~~~G-~~~~~~~---------~-------~~~---~~~~   55 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQ------KGVRVGLLTQSLDAVM-MPFLPPK---------P-------PFP---PGSL   55 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH------TTCCEEEEESCGGGTT-CCSSCCC---------S-------CCC---TTCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH------CCCCEEEEecCCCcCC-cccCccc---------c-------ccc---hhhH
Confidence            35899999999999999999999      8999999999853332 1110000         0       000   0001


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEEE-------EeCC
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGI-------ATGD  172 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~v-------~~~~  172 (182)
                      +..+.     +    ..       +.  ++..+.+.|.+.+++. |++++ +++|+++..++ +.+.++       ...+
T Consensus        56 ~~~~~-----d----~~-------g~--~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~-~~v~~v~~~~g~~i~a~  115 (232)
T 2cul_A           56 LERAY-----D----PK-------DE--RVWAFHARAKYLLEGLRPLHLF-QATATGLLLEG-NRVVGVRTWEGPPARGE  115 (232)
T ss_dssp             HHHHC-----C----TT-------CC--CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEET-TEEEEEEETTSCCEECS
T ss_pred             Hhhhc-----c----CC-------CC--CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeC-CEEEEEEECCCCEEECC
Confidence            11110     0    00       11  5678899999999886 99998 57999998644 444333       3457


Q ss_pred             EEEecCCC
Q psy2240         173 VGIAKDGS  180 (182)
Q Consensus       173 ~vi~adG~  180 (182)
                      .||.|+|.
T Consensus       116 ~VV~A~G~  123 (232)
T 2cul_A          116 KVVLAVGS  123 (232)
T ss_dssp             EEEECCTT
T ss_pred             EEEECCCC
Confidence            88888886

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.52  E-value=1.2e-13  Score=106.34  Aligned_cols=139  Identities=20%  Similarity=0.232  Sum_probs=79.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC-CCCccccc---cccChhHHhhhhhhHHhcCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE-VGGHILSG---AVIDPIALNELLPDWKDLGAPLNTPV   96 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~-~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (182)
                      ..+||+|||||++|+++|+.|++      .|.+|+|||+.+. .+. ..+.   +......+.+   .+...+..     
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr------~G~kVlLIEk~~~~iG~-~~Cnps~ggia~~~lv~---ei~algg~-----   91 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAAR------MGQQTLLLTHNIDTLGQ-MSCNPAIGGIGKGHLVK---EVDALGGL-----   91 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESCGGGTTC-CSSSSEEESTTHHHHHH---HHHHTTCS-----
T ss_pred             CcCCEEEECChHHHHHHHHHHHh------CCCCEEEEeeccccccc-ccccccccchhhHHHHH---HHHHhccH-----
Confidence            46899999999999999999999      8999999999852 332 1111   1111111111   11111100     


Q ss_pred             hhhhHHHHHhhccCCCCCCCC--CCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEEEe---
Q psy2240          97 HEDKFAYLTKSKRIGIPILPG--MPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIAT---  170 (182)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v~~---  170 (182)
                          +..........+..+..  .+........+++..+...|.+.+++ .|++|+ +++|+++.. +++.+.+|.+   
T Consensus        92 ----~~~~~d~~gi~f~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~-e~g~V~GV~t~dG  165 (651)
T 3ces_A           92 ----MAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIV-ENDRVVGAVTQMG  165 (651)
T ss_dssp             ----HHHHHHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE-SSSBEEEEEETTS
T ss_pred             ----HHHHhhhcccchhhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEe-cCCEEEEEEECCC
Confidence                01111111111111110  01111112357788899999999988 699994 679999986 4455555443   


Q ss_pred             ----CCEEEecCCC
Q psy2240         171 ----GDVGIAKDGS  180 (182)
Q Consensus       171 ----~~~vi~adG~  180 (182)
                          ++.||.|+|.
T Consensus       166 ~~I~Ad~VVLATGt  179 (651)
T 3ces_A          166 LKFRAKAVVLTVGT  179 (651)
T ss_dssp             EEEEEEEEEECCST
T ss_pred             CEEECCEEEEcCCC
Confidence                3567777765

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.52  E-value=5e-14  Score=102.58  Aligned_cols=145  Identities=16%  Similarity=0.212  Sum_probs=82.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc------ccccccCh-------hH----Hhhhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI------LSGAVIDP-------IA----LNELL   82 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~------~~~~~~~~-------~~----~~~~~   82 (182)
                      ..++||+|||||++|+++|++|++      +|.+|+||||.....|.+      .+++.+.+       ..    ..+.+
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~------~G~~V~vle~~~~~~g~s~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~   77 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILAR------KGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTLTDGPRQAKWEESTF   77 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSCTTCTTCTTSSGGGCCCBCCCCSCTTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHh------CCCEEEEEeccCCCCcCCcCcccCcccccccCcccCCCchHHHHHHHHHH
Confidence            346899999999999999999999      899999999987544311      12222111       01    11112


Q ss_pred             hhHHhcCCC-CCcc------c-h-h--hhHHHHHhhccCCCCCCCC--CC-----CCCCCccccchHHHHHHHHHHHHHc
Q psy2240          83 PDWKDLGAP-LNTP------V-H-E--DKFAYLTKSKRIGIPILPG--MP-----MNNHGNYVVRLGHVVKWLGEQAEAM  144 (182)
Q Consensus        83 ~~~~~~~~~-~~~~------~-~-~--~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~l~~~l~~~~~~~  144 (182)
                      ..|...... ....      + . .  ....+... ....+..+..  .|     ... ....+++..+...|.+.+++.
T Consensus        78 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~l~~~~~p~~~~g~~~-~~~~v~p~~~~~~l~~~~~~~  155 (363)
T 1c0p_A           78 KKWVELVPTGHAMWLKGTRRFAQNEDGLLGHWYKD-ITPNYRPLPSSECPPGAIGVTY-DTLSVHAPKYCQYLARELQKL  155 (363)
T ss_dssp             HHHHHHTTTTSSEEEEEEEEEESSGGGGGGGTTTT-TSTTCEECCGGGSSTTCEEEEE-EEEECCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCcccCCeEEECCEEEEecCccchhHHHHH-hCCCcEECCHHHCCCceEEEEE-ecceecHHHHHHHHHHHHHHC
Confidence            233332111 0000      0 0 0  00001000 0000111100  00     000 245789999999999999999


Q ss_pred             CcEEecCCccceeEEcCCCcEEEEEeCCEEEecCCC
Q psy2240         145 GVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGS  180 (182)
Q Consensus       145 gv~i~~~~~v~~i~~~~~g~~~~v~~~~~vi~adG~  180 (182)
                      |++|++ ++|+++..+   .  .  .++.||.|+|.
T Consensus       156 G~~i~~-~~v~~l~~~---~--~--~a~~VV~A~G~  183 (363)
T 1c0p_A          156 GATFER-RTVTSLEQA---F--D--GADLVVNATGL  183 (363)
T ss_dssp             TCEEEE-CCCSBGGGT---C--S--SCSEEEECCGG
T ss_pred             CCEEEE-EEcccHhhc---C--c--CCCEEEECCCc
Confidence            999999 999998642   1  1  56778877775

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.51  E-value=1.7e-13  Score=102.41  Aligned_cols=35  Identities=23%  Similarity=0.191  Sum_probs=31.7

Q ss_pred             ccccchHHHHHHHHHHHHHcCcEEecCCccceeEE
Q psy2240         125 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY  159 (182)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~  159 (182)
                      ...+++..+.+.|.+.+++.|++|+++++|++|..
T Consensus       175 ~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~  209 (448)
T 3axb_A          175 AGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVEL  209 (448)
T ss_dssp             EEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEE
T ss_pred             CeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEe
Confidence            45678889999999999999999999999999986

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.51  E-value=4.3e-14  Score=108.17  Aligned_cols=55  Identities=16%  Similarity=0.215  Sum_probs=46.0

Q ss_pred             ccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEEE-------EeCCEEEecCCC
Q psy2240         125 NYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKGI-------ATGDVGIAKDGS  180 (182)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~v-------~~~~~vi~adG~  180 (182)
                      .+.+++..+.+.|.+.+++. |++++++ +|+++..++++.++++       ...++||.|+|.
T Consensus       188 ~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~  250 (550)
T 2e4g_A          188 AWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGF  250 (550)
T ss_dssp             EEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGG
T ss_pred             ceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCC
Confidence            56799999999999999988 9999999 9999987666655443       446899999996

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=99.49  E-value=6.5e-15  Score=107.97  Aligned_cols=134  Identities=20%  Similarity=0.168  Sum_probs=78.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCC--CceEEEEecCCCCCCccccccccChhHHhhhh--hhH-HhcCCCCCccc-h
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGK--ELKVCLVEKAAEVGGHILSGAVIDPIALNELL--PDW-KDLGAPLNTPV-H   97 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~--g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~-~   97 (182)
                      ||+|||||++|+++|+.|++      .  |++|+||||.+..... ..+..+.+..+....  ..+ ..   .+.... .
T Consensus         2 dV~IVGaG~aGl~~A~~L~~------~~~G~~V~v~E~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   71 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQ------ARPLWAIDIVEKNDEQEVL-GWGVVLPGRPGQHPANPLSYLDA---PERLNPQF   71 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------HCTTSEEEEECSSCTTCCC-CSEEEEESCTTTCTTCGGGGSSC---GGGGCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHh------cCCCCCEEEEECCCCCCcc-eeEEEeCcHHHHhhcCcchhhhh---hHHHhhcc
Confidence            79999999999999999999      6  9999999998765210 011111111111000  001 00   000000 0


Q ss_pred             hhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEeCCEEEec
Q psy2240          98 EDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAK  177 (182)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~~~~vi~a  177 (182)
                      ...+.+.. .+ ..+.  ..   .....+.+++..+.+.|.+.+++.|++++++++|++++..  .    ....++||+|
T Consensus        72 ~~~~~~~~-~g-~~~~--~~---~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~----~~~ad~vV~A  138 (381)
T 3c4a_A           72 LEDFKLVH-HN-EPSL--MS---TGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL--P----LADYDLVVLA  138 (381)
T ss_dssp             ECCEEEEE-SS-SEEE--CC---CCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC--C----GGGCSEEEEC
T ss_pred             ccceEEEe-CC-eeEE--ec---CCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc--c----cccCCEEEEC
Confidence            00000000 00 0000  00   0112457899999999999999899999999999998642  1    2357999999


Q ss_pred             CCC
Q psy2240         178 DGS  180 (182)
Q Consensus       178 dG~  180 (182)
                      ||.
T Consensus       139 dG~  141 (381)
T 3c4a_A          139 NGV  141 (381)
T ss_dssp             CGG
T ss_pred             CCC
Confidence            996

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.49  E-value=6.1e-14  Score=104.87  Aligned_cols=146  Identities=15%  Similarity=0.134  Sum_probs=81.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCCCCCCccccccccChh-HHh---hhh---hhHH-----
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAAEVGGHILSGAVIDPI-ALN---ELL---PDWK-----   86 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~~~~g~~~~~~~~~~~-~~~---~~~---~~~~-----   86 (182)
                      ..+||+|||||++|+++|+.|++      .|.  +|+|||+.+..+|.+......... .+.   ...   ..+.     
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~------~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~   78 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLA------EKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALP   78 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT------TTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHh------cCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccC
Confidence            45799999999999999999999      888  999999998877654322110000 000   000   0000     


Q ss_pred             hcCCCCCccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE
Q psy2240          87 DLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK  166 (182)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~  166 (182)
                      .........+..........        +.+++........+++..+.++|.+.+++.+..++++++|+++..+++++.+
T Consensus        79 ~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V  150 (447)
T 2gv8_A           79 VYPSPLYRDLQTNTPIELMG--------YCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVV  150 (447)
T ss_dssp             BCCCCCCTTCBCSSCHHHHS--------CTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEE
T ss_pred             CccCchhhhhccCCCHHHhc--------cCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEE
Confidence            00000000000000000000        0111111111334567789999999998878889999999999764443322


Q ss_pred             E-----------EEeCCEEEecCCC
Q psy2240         167 G-----------IATGDVGIAKDGS  180 (182)
Q Consensus       167 ~-----------v~~~~~vi~adG~  180 (182)
                      .           ....+.||.|+|+
T Consensus       151 ~~~~~~~G~~~~~~~~d~VVvAtG~  175 (447)
T 2gv8_A          151 TYKGTKAGSPISKDIFDAVSICNGH  175 (447)
T ss_dssp             EEEESSTTCCEEEEEESEEEECCCS
T ss_pred             EEeecCCCCeeEEEEeCEEEECCCC
Confidence            2           2334677777775

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.49  E-value=2.9e-13  Score=103.88  Aligned_cols=140  Identities=18%  Similarity=0.197  Sum_probs=79.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC-CCCCccc--cccccChhHHhhhhhhHHhcCCCCCccch
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA-EVGGHIL--SGAVIDPIALNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~-~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (182)
                      ..+||+|||||++|+++|+.|++      .|.+|+|||+.+ ..+....  +.+.+....+.+.   ....+..      
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr------~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~e---ldalgg~------   90 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAAR------MGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVRE---IDALGGE------   90 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHH------TTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHH---HHHHTCS------
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH------CCCCEEEEEecccccCCcCccccccccchHHHHHH---HHHhhhH------
Confidence            46899999999999999999999      899999999985 3332111  1111111111111   1111100      


Q ss_pred             hhhHHHHHhhccCCCCCCC--CCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEEEe----
Q psy2240          98 EDKFAYLTKSKRIGIPILP--GMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIAT----  170 (182)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v~~----  170 (182)
                         +..........+..+.  ..+........+++..+.+.|.+.+++ .|++|+ +++|+++.. +++.+.+|.+    
T Consensus        91 ---~~~~~d~~gi~f~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~-e~g~V~GV~t~dG~  165 (637)
T 2zxi_A           91 ---MGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIV-KNNQVVGVRTNLGV  165 (637)
T ss_dssp             ---HHHHHHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEE-SSSBEEEEEETTSC
T ss_pred             ---HHHHhhhcccceeecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEe-cCCEEEEEEECCCc
Confidence               0111111111111110  001111112356788899999999988 599995 679999986 4455655543    


Q ss_pred             ---CCEEEecCCC
Q psy2240         171 ---GDVGIAKDGS  180 (182)
Q Consensus       171 ---~~~vi~adG~  180 (182)
                         ++.||.|+|.
T Consensus       166 ~i~AdaVVLATG~  178 (637)
T 2zxi_A          166 EYKTKAVVVTTGT  178 (637)
T ss_dssp             EEECSEEEECCTT
T ss_pred             EEEeCEEEEccCC
Confidence               4567777664

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.48  E-value=8.5e-13  Score=101.87  Aligned_cols=139  Identities=22%  Similarity=0.208  Sum_probs=75.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCCCCCCccc--ccccc---C-hhHHhhhhhhHHhcCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAEVGGHIL--SGAVI---D-PIALNELLPDWKDLGAPL   92 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~~~~g~~~--~~~~~---~-~~~~~~~~~~~~~~~~~~   92 (182)
                      .++||+|||||++|+++|+.|++      .|  .+|+||||.+..++.+.  .++..   . .......+.+....+..+
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~------~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~   77 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQ------ANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWL   77 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH------HCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh------cCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCC
Confidence            46899999999999999999999      78  99999999876554332  12211   0 011111111111111111


Q ss_pred             Cccc--------hhhhHHHHHhhccCCCCCCCCC--CCCCCCccc---------cchHHHHHHHHHHHHHcC-cEEecCC
Q psy2240          93 NTPV--------HEDKFAYLTKSKRIGIPILPGM--PMNNHGNYV---------VRLGHVVKWLGEQAEAMG-VEIYPGI  152 (182)
Q Consensus        93 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~l~~~l~~~~~~~g-v~i~~~~  152 (182)
                      .+..        ....+.|+... ...+......  .....++..         .....+...|.+.+++.| ++|++++
T Consensus        78 ~d~~~v~~~~~~~~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~  156 (602)
T 1kf6_A           78 CEQDVVDYFVHHCPTEMTQLELW-GCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEH  156 (602)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHT-TCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCC
Confidence            1110        11223333221 1222111110  000000111         124578999999998888 9999999


Q ss_pred             ccceeEEcCCCcEEE
Q psy2240         153 PASEVLYHGDGSVKG  167 (182)
Q Consensus       153 ~v~~i~~~~~g~~~~  167 (182)
                      +|+++..+ ++.+.+
T Consensus       157 ~v~~l~~~-~g~v~G  170 (602)
T 1kf6_A          157 FVLDILVD-DGHVRG  170 (602)
T ss_dssp             EEEEEEEE-TTEEEE
T ss_pred             EEEEEEEe-CCEEEE
Confidence            99999874 344443

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.47  E-value=4.9e-13  Score=95.52  Aligned_cols=88  Identities=22%  Similarity=0.256  Sum_probs=63.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      +.+||+|||||++|+++|+.|++      .|++|+|||+.  .+|....                               
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~------~g~~v~lie~~--~gg~~~~-------------------------------   54 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSAR------YMLKTLVIGET--PGGQLTE-------------------------------   54 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESS--TTGGGGG-------------------------------
T ss_pred             CccCEEEECccHHHHHHHHHHHH------CCCcEEEEecc--CCCeecc-------------------------------
Confidence            35799999999999999999999      89999999998  5543221                               


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG  163 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g  163 (182)
                           ......++.          ...+.+..+...+.+.+++.|+++++ ++|+++..+++.
T Consensus        55 -----~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~  101 (323)
T 3f8d_A           55 -----AGIVDDYLG----------LIEIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRGDE  101 (323)
T ss_dssp             -----CCEECCSTT----------STTEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC--C
T ss_pred             -----cccccccCC----------CCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecCCE
Confidence                 000000110          11145678889999999989999999 899999764433

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.47  E-value=2e-12  Score=99.37  Aligned_cols=41  Identities=27%  Similarity=0.460  Sum_probs=36.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      .++||+|||||++|+++|+.|++      +|++|+|||+....+|.+
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~------rG~~V~LlE~~~~~~GtS   71 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAA------SGIKTGLIEMQDFAEGTS   71 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSTTCSGG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH------CCCcEEEEeCCCCCCCcc
Confidence            46899999999999999999999      899999999997666654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.46  E-value=4.6e-13  Score=102.19  Aligned_cols=136  Identities=18%  Similarity=0.202  Sum_probs=66.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC-----hhHHhhhhhhHHhcCCCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID-----PIALNELLPDWKDLGAPLN   93 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~   93 (182)
                      +.++||+|||||++|+++|+.|++       |.+|+||||.+..++.+. +++.+.     .......+.++...+..+.
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-------G~~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~ds~~~~~~d~l~~g~g~~   78 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-------QHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGIC   78 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-------TSCEEEECSSCTTC-------------CCSHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-------CCcEEEEECCCCCCCChhhcCCCEEEecCCCCCHHHHHHHHHHhhcccC
Confidence            346899999999999999999975       789999999987665442 222221     1122222222222222222


Q ss_pred             ccc--------hhhhHHHHHhhccCCCCCCC----C--CCCCCCCcc---------ccchHHHHHHHHHHHHH-cCcEEe
Q psy2240          94 TPV--------HEDKFAYLTKSKRIGIPILP----G--MPMNNHGNY---------VVRLGHVVKWLGEQAEA-MGVEIY  149 (182)
Q Consensus        94 ~~~--------~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~---------~~~~~~l~~~l~~~~~~-~gv~i~  149 (182)
                      +..        ....+.|+... ...+....    .  +.....++.         ...+..+.+.|.+.+++ .|++|+
T Consensus        79 d~~~v~~~~~~~~~~i~~l~~~-Gv~f~~~~~~~~~g~~~~~~~gg~~~~r~~~~~d~~g~~l~~~L~~~~~~~~gv~i~  157 (540)
T 1chu_A           79 DRHAVEFVASNARSCVQWLIDQ-GVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVL  157 (540)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHT-TCC--------------------------------------CCCHHHHHHCTTEEEE
T ss_pred             CHHHHHHHHHhHHHHHHHHHHc-CCCcccCcccCcCCccccccccccccCeEEEeCCCCHHHHHHHHHHHHHcCCCCEEE
Confidence            110        11233344322 12221111    0  000000000         11334677888888888 799999


Q ss_pred             cCCccceeEEcCCC
Q psy2240         150 PGIPASEVLYHGDG  163 (182)
Q Consensus       150 ~~~~v~~i~~~~~g  163 (182)
                      ++++|+++..++++
T Consensus       158 ~~~~v~~L~~~~~g  171 (540)
T 1chu_A          158 ERTNAVDLIVSDKI  171 (540)
T ss_dssp             CSEEEEEEEEGGGT
T ss_pred             eCcEEEEEEEcCCC
Confidence            99999999874334

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.46  E-value=3.6e-13  Score=98.08  Aligned_cols=134  Identities=16%  Similarity=0.206  Sum_probs=74.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      ..+||+|||||++|+++|+.|++      .|. +|+|||+.+ .++.....               ......+.......
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~------~g~~~v~lie~~~-~Gg~~~~~---------------~~~~~~~~~~~~~~   60 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKD------FGITDVIILEKGT-VGHSFKHW---------------PKSTRTITPSFTSN   60 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH------TTCCCEEEECSSS-TTHHHHTS---------------CTTCBCSSCCCCCG
T ss_pred             ccCcEEEECcCHHHHHHHHHHHH------cCCCcEEEEecCC-CCCccccC---------------cccccccCcchhcc
Confidence            35799999999999999999999      898 999999987 55422110               00000000000000


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----EEeCCEEE
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----IATGDVGI  175 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----v~~~~~vi  175 (182)
                      .+..    ..+........+........+++..+..++.+.+++.|++++++++|+++..+++++.+.    ....+.||
T Consensus        61 ~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~d~vV  136 (369)
T 3d1c_A           61 GFGM----PDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIF  136 (369)
T ss_dssp             GGTC----CCTTCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCCEEEEEEE
T ss_pred             cCCc----hhhhhccccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCCEEEeCEEE
Confidence            0000    000000000000000002234566788888888888999999999999998754444332    12234555


Q ss_pred             ecCCC
Q psy2240         176 AKDGS  180 (182)
Q Consensus       176 ~adG~  180 (182)
                      .|.|+
T Consensus       137 lAtG~  141 (369)
T 3d1c_A          137 VATGD  141 (369)
T ss_dssp             ECCCS
T ss_pred             ECCCC
Confidence            55554

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.46  E-value=6.6e-13  Score=96.53  Aligned_cols=113  Identities=21%  Similarity=0.294  Sum_probs=74.9

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchh
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHE   98 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (182)
                      |+..+||+|||||++|+++|+.|++      .|++|+|||+.+..+|...                  ... +.      
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~------~g~~v~lie~~~~~gg~~~------------------~~~-~~------   59 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGM------NNISCRIIESMPQLGGQLA------------------ALY-PE------   59 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCHHHH------------------HTC-TT------
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHh------CCCCEEEEecCCCCCCccc------------------ccC-CC------
Confidence            3456899999999999999999999      8999999999877654221                  000 00      


Q ss_pred             hhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCc-EEE-----EEeCC
Q psy2240          99 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGS-VKG-----IATGD  172 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~-~~~-----v~~~~  172 (182)
                              ...+..+.          ...+++..+.+.|.+.+++.+++++++++|+++..++++. .+.     ....+
T Consensus        60 --------~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~  121 (360)
T 3ab1_A           60 --------KHIYDVAG----------FPEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSR  121 (360)
T ss_dssp             --------SEECCSTT----------CSSEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEE
T ss_pred             --------cccccCCC----------CCCCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEee
Confidence                    00000000          1124567888899998988899999999999998754422 221     22345


Q ss_pred             EEEecCCC
Q psy2240         173 VGIAKDGS  180 (182)
Q Consensus       173 ~vi~adG~  180 (182)
                      .+|.|+|.
T Consensus       122 ~li~AtG~  129 (360)
T 3ab1_A          122 AVLIAAGL  129 (360)
T ss_dssp             EEEECCTT
T ss_pred             EEEEccCC
Confidence            66666665

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.46  E-value=1.2e-12  Score=93.55  Aligned_cols=108  Identities=20%  Similarity=0.202  Sum_probs=70.6

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchh
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHE   98 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (182)
                      |+..+||+|||||++|+++|+.|++      .|++|+|||+. ..+|.......                          
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~------~g~~v~lie~~-~~gg~~~~~~~--------------------------   59 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAAR------SGFSVAILDKA-VAGGLTAEAPL--------------------------   59 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESS-STTGGGGGCSC--------------------------
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHh------CCCcEEEEeCC-CCCccccccch--------------------------
Confidence            4557899999999999999999999      89999999995 44432210000                          


Q ss_pred             hhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----EEeCCEE
Q psy2240          99 DKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----IATGDVG  174 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----v~~~~~v  174 (182)
                                   ...+   +.+    ..+++..+.+.+.+.+++.|+++++ .+|+++..+.+...+.    ....+.+
T Consensus        60 -------------~~~~---~~~----~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~~~~~~~~l  118 (319)
T 3cty_A           60 -------------VENY---LGF----KSIVGSELAKLFADHAANYAKIREG-VEVRSIKKTQGGFDIETNDDTYHAKYV  118 (319)
T ss_dssp             -------------BCCB---TTB----SSBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEETTEEEEEESSSEEEEEEE
T ss_pred             -------------hhhc---CCC----cccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEeCCEEEEEECCCEEEeCEE
Confidence                         0000   000    1234557788888888888999988 6898887644322221    1234667


Q ss_pred             EecCCC
Q psy2240         175 IAKDGS  180 (182)
Q Consensus       175 i~adG~  180 (182)
                      |.|+|.
T Consensus       119 i~AtG~  124 (319)
T 3cty_A          119 IITTGT  124 (319)
T ss_dssp             EECCCE
T ss_pred             EECCCC
Confidence            777664

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.46  E-value=8.5e-13  Score=101.54  Aligned_cols=142  Identities=14%  Similarity=0.150  Sum_probs=78.7

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC-CCCCccc--cccccChhHHhhhhhhHHhcCCCCCcc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA-EVGGHIL--SGAVIDPIALNELLPDWKDLGAPLNTP   95 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~-~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (182)
                      +...+||+|||||++|+++|+.|++      .|.+|+|||+.+ ..++...  +.+.+....+.+.+..|..   ..   
T Consensus        18 ~~~~yDVIVIGgG~AGl~AAlaLAr------~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g---~~---   85 (641)
T 3cp8_A           18 GSHMYDVIVVGAGHAGCEAALAVAR------GGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGG---EM---   85 (641)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTC---SH---
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHH------CCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhccc---HH---
Confidence            4456899999999999999999999      899999999985 2333211  1111111112122221110   00   


Q ss_pred             chhhhHHHHHhhccCCCCCCC--CCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeEEcCCCcEEEEEe--
Q psy2240          96 VHEDKFAYLTKSKRIGIPILP--GMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVLYHGDGSVKGIAT--  170 (182)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~~~~~g~~~~v~~--  170 (182)
                           ..+... ....+..+.  ..+........+++..+...|.+.+++ .|++++. .+|+++..+ ++.+.+|.+  
T Consensus        86 -----~~~~d~-~gi~f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d-~g~V~GV~t~~  157 (641)
T 3cp8_A           86 -----GKAIDA-TGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSAN-SGKFSSVTVRS  157 (641)
T ss_dssp             -----HHHHHH-HEEEEEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEE-TTEEEEEEETT
T ss_pred             -----HHHHHh-cCCchhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEec-CCEEEEEEECC
Confidence                 011111 111111110  001111112467888999999999987 4899964 589998763 445554443  


Q ss_pred             -----CCEEEecCCC
Q psy2240         171 -----GDVGIAKDGS  180 (182)
Q Consensus       171 -----~~~vi~adG~  180 (182)
                           ++.||.|+|.
T Consensus       158 G~~i~Ad~VVLATG~  172 (641)
T 3cp8_A          158 GRAIQAKAAILACGT  172 (641)
T ss_dssp             SCEEEEEEEEECCTT
T ss_pred             CcEEEeCEEEECcCC
Confidence                 3456666664

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.45  E-value=4.5e-12  Score=83.41  Aligned_cols=103  Identities=24%  Similarity=0.351  Sum_probs=71.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      +|++|||||++|+.+|..|++      .|.+|+|+|+.+..-...                      ..           
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~------~g~~v~lie~~~~~~~~~----------------------~~-----------   42 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLAR------AGLKVLVLDGGRSKVKGV----------------------SR-----------   42 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH------TTCCEEEEECSCCTTTTC----------------------SC-----------
T ss_pred             CeEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCCCcccCc----------------------hh-----------
Confidence            689999999999999999999      899999999986211000                      00           


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----EEeCCEEEecC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----IATGDVGIAKD  178 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----v~~~~~vi~ad  178 (182)
                               ...++.++      ..+....+.+.+.+.+++.|++++++ +|++++.++++..+.    ....+.||.|.
T Consensus        43 ---------~~~~~~~~------~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g~i~ad~vI~A~  106 (180)
T 2ywl_A           43 ---------VPNYPGLL------DEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEGVEKAERLLLCT  106 (180)
T ss_dssp             ---------CCCSTTCT------TCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSCEEEEEEEEECC
T ss_pred             ---------hhccCCCc------CCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCCEEEECEEEECC
Confidence                     00000000      12345688899999999999999999 999998754443221    23457777777


Q ss_pred             CC
Q psy2240         179 GS  180 (182)
Q Consensus       179 G~  180 (182)
                      |.
T Consensus       107 G~  108 (180)
T 2ywl_A          107 HK  108 (180)
T ss_dssp             TT
T ss_pred             CC
Confidence            75

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.45  E-value=1.2e-12  Score=93.92  Aligned_cols=93  Identities=24%  Similarity=0.360  Sum_probs=67.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+|||+.+..+|....           .++   .             
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~------~g~~v~lie~~~~~gG~~~~-----------~~~---~-------------   52 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGM------RQASVKIIESLPQLGGQLSA-----------LYP---E-------------   52 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCHHHHH-----------HCT---T-------------
T ss_pred             ccceEEEECCCHHHHHHHHHHHH------CCCCEEEEEcCCCCCceehh-----------cCC---C-------------
Confidence            45799999999999999999999      89999999999877643210           000   0             


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCC
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD  162 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~  162 (182)
                            ......+.          ...+.+..+...+.+.+++.+++++++++|+++..+++
T Consensus        53 ------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~   98 (332)
T 3lzw_A           53 ------KYIYDVAG----------FPKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQAD   98 (332)
T ss_dssp             ------SEECCSTT----------CSSEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTT
T ss_pred             ------ceEeccCC----------CCCCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCC
Confidence                  00000100          11245678899999999889999999999999987554

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.44  E-value=7.4e-12  Score=94.16  Aligned_cols=147  Identities=20%  Similarity=0.207  Sum_probs=78.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-ccccc----Ch-hHHhhhhhhHHhcCCCCCccc-
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVI----DP-IALNELLPDWKDLGAPLNTPV-   96 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~-   96 (182)
                      ||+|||||++|+++|+.|++      .|.+|+||||. ..++.+. +.+.+    .. ......+.+....+..+.+.. 
T Consensus         1 DVvVIG~G~AGl~aA~~la~------~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~   73 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRR------AGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKT   73 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHH------TTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHH
T ss_pred             CEEEECCCHHHHHHHHHHHH------CCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHH
Confidence            79999999999999999999      89999999999 5555432 22211    11 111111111111111111110 


Q ss_pred             -------hhhhHHHHHhhccCCCCC-CC--CCCCCCCC--ccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCc
Q psy2240          97 -------HEDKFAYLTKSKRIGIPI-LP--GMPMNNHG--NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGS  164 (182)
Q Consensus        97 -------~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~--~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~  164 (182)
                             ....+.++... ...+.. ..  ........  ........+.+.|.+.+++.|++++++++| ++..+ ++.
T Consensus        74 v~~~~~~~~~~i~~l~~~-Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~-~~~  150 (472)
T 2e5v_A           74 VNYVTSEAKNVIETFESW-GFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVK-DGK  150 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEE-TTE
T ss_pred             HHHHHHHHHHHHHHHHHc-CCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEe-CCE
Confidence                   11223333221 121211 00  00000000  012245678899999998889999999999 99764 455


Q ss_pred             EEEEEe--------CCEEEecCCC
Q psy2240         165 VKGIAT--------GDVGIAKDGS  180 (182)
Q Consensus       165 ~~~v~~--------~~~vi~adG~  180 (182)
                      +.++..        .+.||.|+|.
T Consensus       151 v~Gv~v~~~~g~~~a~~VVlAtGg  174 (472)
T 2e5v_A          151 VTGFVTEKRGLVEDVDKLVLATGG  174 (472)
T ss_dssp             EEEEEETTTEEECCCSEEEECCCC
T ss_pred             EEEEEEEeCCCeEEeeeEEECCCC
Confidence            544322        3555555554

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.43  E-value=1.9e-12  Score=93.03  Aligned_cols=108  Identities=23%  Similarity=0.223  Sum_probs=70.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC----CCCCCccccccccChhHHhhhhhhHHhcCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA----AEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPV   96 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+|||+.    ...++...                  ...       
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~------~g~~v~lie~~~~~~~~~gg~~~------------------~~~-------   55 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAAR------AELKPLLFEGWMANDIAPGGQLT------------------TTT-------   55 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH------TTCCCEEECCSSBTTBCTTCGGG------------------GCS-------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH------CCCeEEEEeccCccccCCCceee------------------ecc-------
Confidence            45799999999999999999999      89999999982    22222110                  000       


Q ss_pred             hhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----EEeCC
Q psy2240          97 HEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----IATGD  172 (182)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----v~~~~  172 (182)
                                 .....+.+         ...+++..+...|.+.+++.|++++.++ |+++..+.+.+.+.    ....+
T Consensus        56 -----------~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~~~~~~~~~  114 (333)
T 1vdc_A           56 -----------DVENFPGF---------PEGILGVELTDKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFTDSKAILAD  114 (333)
T ss_dssp             -----------EECCSTTC---------TTCEEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSSSSEEEECSSEEEEEE
T ss_pred             -----------ccccCCCC---------ccCCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEECCcEEEcC
Confidence                       00001100         1224567888899988988999999986 88887644433221    23446


Q ss_pred             EEEecCCC
Q psy2240         173 VGIAKDGS  180 (182)
Q Consensus       173 ~vi~adG~  180 (182)
                      .+|.|+|.
T Consensus       115 ~vv~A~G~  122 (333)
T 1vdc_A          115 AVILAIGA  122 (333)
T ss_dssp             EEEECCCE
T ss_pred             EEEECCCC
Confidence            67777764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.43  E-value=3e-12  Score=92.08  Aligned_cols=111  Identities=27%  Similarity=0.257  Sum_probs=73.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+|||+.+..+|...                  .. .+. .      
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~------~g~~v~lie~~~~~gg~~~------------------~~-~~~-~------   51 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGM------RGLSFRFVDPLPEPGGQLT------------------AL-YPE-K------   51 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESSSSSCHHHH------------------HT-CTT-S------
T ss_pred             CcCcEEEECCCHHHHHHHHHHHh------CCCCEEEEeCCCCCCCeee------------------cc-CCC-c------
Confidence            45899999999999999999999      8999999999877664221                  00 000 0      


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEE
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGI  175 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi  175 (182)
                             ..+..+.          ...+.+..+...|.+.+++.+++++++++|+++..+++.+.+.     ....+.+|
T Consensus        52 -------~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv  114 (335)
T 2zbw_A           52 -------YIYDVAG----------FPKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVI  114 (335)
T ss_dssp             -------EECCSTT----------CSSEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEE
T ss_pred             -------eeeccCC----------CCCCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEE
Confidence                   0000000          1124556788888888888899999999999987644322221     12335566


Q ss_pred             ecCCC
Q psy2240         176 AKDGS  180 (182)
Q Consensus       176 ~adG~  180 (182)
                      .|.|.
T Consensus       115 ~AtG~  119 (335)
T 2zbw_A          115 IAAGV  119 (335)
T ss_dssp             ECCTT
T ss_pred             ECCCC
Confidence            66664

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.43  E-value=4.5e-12  Score=96.86  Aligned_cols=127  Identities=20%  Similarity=0.268  Sum_probs=79.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCC-ccchhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLN-TPVHED   99 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   99 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+|||+.+..||...                  ....+-. ......
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~------~g~~v~iiE~~~~~GGtw~------------------~~~yPg~~~d~~~~   63 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQ------AGMKVLGIEAGEDVGGTWY------------------WNRYPGCRLDTESY   63 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCTHHH------------------HCCCTTCBCSSCHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHh------CCCCEEEEeCCCCCCCccc------------------cCCCCceeecCchh
Confidence            45799999999999999999999      8999999999988776421                  1111100 000111


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCc--EEecCCccceeEEcCCCcEEE-------EEe
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKG-------IAT  170 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv--~i~~~~~v~~i~~~~~g~~~~-------v~~  170 (182)
                      .+.........     ..   +.......++.++..++.+.+++.++  .++++++|+++..+++...+.       ...
T Consensus        64 ~y~~~f~~~~~-----~~---~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~  135 (545)
T 3uox_A           64 AYGYFALKGII-----PE---WEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVT  135 (545)
T ss_dssp             HHCHHHHTTSS-----TT---CCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEE
T ss_pred             hcccccCcccc-----cC---CCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEE
Confidence            11111111100     00   11113345677899999999988887  799999999998755432222       234


Q ss_pred             CCEEEecCC
Q psy2240         171 GDVGIAKDG  179 (182)
Q Consensus       171 ~~~vi~adG  179 (182)
                      .+.||.|.|
T Consensus       136 ad~lV~AtG  144 (545)
T 3uox_A          136 CRFLISATG  144 (545)
T ss_dssp             EEEEEECCC
T ss_pred             eCEEEECcC
Confidence            567777777

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.43  E-value=4.7e-12  Score=90.76  Aligned_cols=108  Identities=26%  Similarity=0.330  Sum_probs=71.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      +..+||+|||||++|+++|+.|++      .|++|+|||+. ..+|.......                           
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~------~g~~v~lie~~-~~gg~~~~~~~---------------------------   51 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGR------AQLSTLILEKG-MPGGQIAWSEE---------------------------   51 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESS-CTTGGGGGCSC---------------------------
T ss_pred             cccCCEEEECCCHHHHHHHHHHHH------cCCcEEEEeCC-CCCcccccccc---------------------------
Confidence            346899999999999999999999      89999999998 45543211000                           


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEc--CCC-cEEE-----EEeC
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH--GDG-SVKG-----IATG  171 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~--~~g-~~~~-----v~~~  171 (182)
                                  ....+.+      ...+++..+.+.+.+.+++.|+++++ .+|+++..+  ++. +.+.     ....
T Consensus        52 ------------~~~~~~~------~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~  112 (325)
T 2q7v_A           52 ------------VENFPGF------PEPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRA  112 (325)
T ss_dssp             ------------BCCSTTC------SSCBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEE
T ss_pred             ------------cccCCCC------CCCCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEe
Confidence                        0000000      11245567888898889889999987 589888764  332 2221     2334


Q ss_pred             CEEEecCCC
Q psy2240         172 DVGIAKDGS  180 (182)
Q Consensus       172 ~~vi~adG~  180 (182)
                      +.+|.|+|.
T Consensus       113 ~~vv~AtG~  121 (325)
T 2q7v_A          113 KAVILATGA  121 (325)
T ss_dssp             EEEEECCCE
T ss_pred             CEEEECcCC
Confidence            666666664

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=99.42  E-value=8.3e-14  Score=100.99  Aligned_cols=49  Identities=16%  Similarity=0.269  Sum_probs=38.5

Q ss_pred             ccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEeCCEEEecCCC
Q psy2240         125 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGS  180 (182)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~~~~vi~adG~  180 (182)
                      ...+++..+.+.|.+.+++.|++|++ ++|++++.+.+      ...+.||.|+|.
T Consensus       136 ~~~v~p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~------~~a~~VV~A~G~  184 (351)
T 3g3e_A          136 SLILEGKNYLQWLTERLTERGVKFFQ-RKVESFEEVAR------EGADVIVNCTGV  184 (351)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEEE-CCCCCHHHHHH------TTCSEEEECCGG
T ss_pred             ceEEcHHHHHHHHHHHHHHCCCEEEE-EEeCCHHHhhc------CCCCEEEECCCc
Confidence            35788999999999999999999999 89999864321      235777777775

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.42  E-value=1.1e-12  Score=100.33  Aligned_cols=129  Identities=19%  Similarity=0.221  Sum_probs=79.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      ...+||+|||||++|+++|+.|++      .|++|+|||+.+..+|........  ..    ..+..  ...+...+...
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~------~G~~v~iiE~~~~~GGtw~~~~yp--g~----~~dv~--s~~y~~~f~~~   84 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRS------QGLTVRAFEAASGVGGVWYWNRYP--GA----RCDVE--SIDYSYSFSPE   84 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCTHHHHCCCT--TC----BCSSC--TTTSSCCSCHH
T ss_pred             CCCCCEEEECchHHHHHHHHHHHh------CCCCEEEEeCCCCCCCccccCCCC--Cc----eeCCC--chhcccccccc
Confidence            346899999999999999999999      899999999998877643211000  00    00000  00000000000


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCc--EEecCCccceeEEcCCCcEEEE-------Ee
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGI-------AT  170 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv--~i~~~~~v~~i~~~~~g~~~~v-------~~  170 (182)
                          .....    .         ......++.++..++.+.+++.++  .++++++|+++..+++...+.|       ..
T Consensus        85 ----~~~~~----~---------~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~  147 (549)
T 4ap3_A           85 ----LEQEW----N---------WSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVS  147 (549)
T ss_dssp             ----HHHHC----C---------CSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEE
T ss_pred             ----cccCC----C---------CccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEE
Confidence                00000    0         012345677899999999999887  8999999999987665433322       34


Q ss_pred             CCEEEecCC
Q psy2240         171 GDVGIAKDG  179 (182)
Q Consensus       171 ~~~vi~adG  179 (182)
                      .+.||.|.|
T Consensus       148 ad~lV~AtG  156 (549)
T 4ap3_A          148 ARFLVVAAG  156 (549)
T ss_dssp             EEEEEECCC
T ss_pred             eCEEEECcC
Confidence            577777777

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.41  E-value=3.6e-12  Score=90.78  Aligned_cols=105  Identities=26%  Similarity=0.299  Sum_probs=70.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      +||+|||||++|+++|+.|++      .|. +|+|||+. ..+|.......                             
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~------~g~~~v~lie~~-~~gg~~~~~~~-----------------------------   45 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATR------GGVKNAVLFEKG-MPGGQITGSSE-----------------------------   45 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH------TTCSSEEEECSS-STTCGGGGCSC-----------------------------
T ss_pred             ceEEEECccHHHHHHHHHHHH------CCCCcEEEEcCC-CCCcccccccc-----------------------------
Confidence            699999999999999999999      899 99999996 34442211000                             


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEe
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIA  176 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~  176 (182)
                                ....+.+      ...+++..+.+.+.+.+++.|++++. ++|+++..+++.+.+.     ....+.+|.
T Consensus        46 ----------~~~~~~~------~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~  108 (311)
T 2q0l_A           46 ----------IENYPGV------KEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVII  108 (311)
T ss_dssp             ----------BCCSTTC------CSCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEE
T ss_pred             ----------cccCCCC------cccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEE
Confidence                      0000000      12356678888998888888999988 7899987644322221     233466666


Q ss_pred             cCCC
Q psy2240         177 KDGS  180 (182)
Q Consensus       177 adG~  180 (182)
                      |+|.
T Consensus       109 AtG~  112 (311)
T 2q0l_A          109 ATGG  112 (311)
T ss_dssp             CCCE
T ss_pred             CCCC
Confidence            6664

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.41  E-value=2.5e-13  Score=94.90  Aligned_cols=40  Identities=33%  Similarity=0.532  Sum_probs=37.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ++||+||||||+||++|+.|++      +|++|+||||.+.+||..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~------~G~~V~v~Ek~~~~GG~~   41 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTA------AGHQVHLFDKSRGSGGRM   41 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHH------CCCCEEEEECCCCCCCcc
Confidence            5799999999999999999999      899999999999888754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.40  E-value=2.8e-12  Score=91.25  Aligned_cols=37  Identities=24%  Similarity=0.521  Sum_probs=32.4

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+.|||+||||||+|+++|+.|++      .|++|+|||+..
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar------~g~~v~lie~~~   39 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGR------ARKQIALFDNNT   39 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHH------TTCCEEEEECSC
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHH------CCCCEEEEeCCC
Confidence            3567999999999999999999999      899999999874

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.40  E-value=8e-12  Score=92.69  Aligned_cols=40  Identities=28%  Similarity=0.493  Sum_probs=36.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      .||+|||||++|+++|+.|++      +|.+|+|||+++.+||...
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~------~G~~V~vlE~~~~~GG~~~   40 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSK------AGHEVEVFERLPITGGRFT   40 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHH------TTCEEEEECSSSSSBTTSS
T ss_pred             CcEEEECCCHHHHHHHHHHHh------CCCceEEEeCCCCCCCcee
Confidence            389999999999999999999      8999999999998887653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.40  E-value=1.6e-12  Score=99.13  Aligned_cols=129  Identities=17%  Similarity=0.209  Sum_probs=80.5

Q ss_pred             ccccEEEECCChHHHHHHHHHH-HhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLK-QLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~-~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      ..+||+|||||++|+++|+.|+ +      .|++|+|||+.+..+|........  ...   .+ ....  .+.......
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~------~G~~v~viE~~~~~GGtw~~~~yp--g~~---~d-~~s~--~~~~~~~~~   72 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHE------LGLTTVGFDKADGPGGTWYWNRYP--GAL---SD-TESH--LYRFSFDRD   72 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT------TCCCEEEEESSSSSCTHHHHCCCT--TCE---EE-EEGG--GSSCCSCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHc------CCCCEEEEECCCCCCCcccccCCC--Cce---ec-CCcc--eeeeccccc
Confidence            4579999999999999999999 7      899999999998877643211000  000   00 0000  000000000


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCc--EEecCCccceeEEcCCCcEEEE-------Ee
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGI-------AT  170 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv--~i~~~~~v~~i~~~~~g~~~~v-------~~  170 (182)
                          ....  .  .         ......++.++.+++.+.+++.++  .++++++|+++..++++..+.|       ..
T Consensus        73 ----~~~~--~--~---------~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~  135 (540)
T 3gwf_A           73 ----LLQE--S--T---------WKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYR  135 (540)
T ss_dssp             ----HHHH--C--C---------CSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             ----cccC--C--C---------CcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEE
Confidence                0000  0  0         013356778899999999999888  8999999999987665333322       34


Q ss_pred             CCEEEecCCC
Q psy2240         171 GDVGIAKDGS  180 (182)
Q Consensus       171 ~~~vi~adG~  180 (182)
                      .+.||.|+|.
T Consensus       136 ad~lV~AtG~  145 (540)
T 3gwf_A          136 AKYVVNAVGL  145 (540)
T ss_dssp             EEEEEECCCS
T ss_pred             eCEEEECCcc
Confidence            5677778873

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.38  E-value=4.3e-12  Score=97.00  Aligned_cols=130  Identities=18%  Similarity=0.185  Sum_probs=78.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      +..+||+|||||++|+++|+.|++      .|++|+|||+.+..||.......  +...   ++   .....+...+.+.
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~------~G~~v~iiE~~~~~GG~w~~~~~--pg~~---~d---~~~~~~~~~f~~~   79 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRE------LGRSVHVIETAGDVGGVWYWNRY--PGAR---CD---IESIEYCYSFSEE   79 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCTHHHHCCC--TTCB---CS---SCTTTSSCCSCHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHh------CCCCEEEEeCCCCCCCcccccCC--Ccee---ec---ccccccccccChh
Confidence            346899999999999999999999      89999999999888764321100  0000   00   0000000000010


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcC--cEEecCCccceeEEcCCCcEEE-------EEe
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMG--VEIYPGIPASEVLYHGDGSVKG-------IAT  170 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g--v~i~~~~~v~~i~~~~~g~~~~-------v~~  170 (182)
                      .   . ..  +..           .....++.++.++|.+.+++.+  ..++++++|+++..++++....       ...
T Consensus        80 ~---~-~~--~~~-----------~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~  142 (542)
T 1w4x_A           80 V---L-QE--WNW-----------TERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIR  142 (542)
T ss_dssp             H---H-HH--CCC-----------CBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEE
T ss_pred             h---h-hc--cCc-----------ccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEE
Confidence            0   0 00  000           0223456788888888887765  6799999999998765432222       234


Q ss_pred             CCEEEecCCC
Q psy2240         171 GDVGIAKDGS  180 (182)
Q Consensus       171 ~~~vi~adG~  180 (182)
                      .+.||.|+|.
T Consensus       143 ad~vV~AtG~  152 (542)
T 1w4x_A          143 ARYLIMASGQ  152 (542)
T ss_dssp             EEEEEECCCS
T ss_pred             eCEEEECcCC
Confidence            5778888884

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.36  E-value=2.6e-12  Score=91.62  Aligned_cols=36  Identities=42%  Similarity=0.600  Sum_probs=33.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|||+||||||+|+++|+.|++      .|++|+|||+...
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~------~g~~v~liE~~~~   38 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGR------SSLKPVMYEGFMA   38 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH------TTCCCEEECCSSG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH------CCCCEEEEecCCC
Confidence            35899999999999999999999      8999999999753

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.35  E-value=8.7e-12  Score=90.06  Aligned_cols=42  Identities=33%  Similarity=0.529  Sum_probs=34.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      .||+|||||++|+++|+.|++.   ..+|++|+||||.+..+|..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~---~~~G~~V~v~Ek~~~~gg~~   43 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQ---TSGPLYLAVWDKADDSGGRM   43 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSC---C-CCEEEEEECSSSSSCGGG
T ss_pred             CcEEEECCcHHHHHHHHHHHhh---ccCCceEEEEECCCCCccce
Confidence            5899999999999999999871   01489999999998877654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.34  E-value=1.1e-11  Score=89.18  Aligned_cols=107  Identities=21%  Similarity=0.286  Sum_probs=69.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      +..+||+|||||++|+++|+.|++      .|++|+|||+. ..+|......                       .    
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~------~g~~v~lie~~-~~gg~~~~~~-----------------------~----   57 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAAR------AQLAPLVFEGT-SFGGALMTTT-----------------------D----   57 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHH------TTCCCEEECCS-SCSCGGGSCS-----------------------C----
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh------CCCeEEEEecC-CCCCceeccc-----------------------h----
Confidence            456899999999999999999999      89999999975 3443211000                       0    


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE-E-----EEeCCE
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK-G-----IATGDV  173 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~-~-----v~~~~~  173 (182)
                                  ....+.   +   ...+.+..+...+.+.+++.++++++++ |+++.. .+.+.+ .     ....+.
T Consensus        58 ------------~~~~~~---~---~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~  117 (335)
T 2a87_A           58 ------------VENYPG---F---RNGITGPELMDEMREQALRFGADLRMED-VESVSL-HGPLKSVVTADGQTHRARA  117 (335)
T ss_dssp             ------------BCCSTT---C---TTCBCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-SSSSEEEEETTSCEEEEEE
T ss_pred             ------------hhhcCC---C---CCCCCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-CCcEEEEEeCCCCEEEeCE
Confidence                        000000   0   1124556788888888888899999986 888765 333222 1     233456


Q ss_pred             EEecCCC
Q psy2240         174 GIAKDGS  180 (182)
Q Consensus       174 vi~adG~  180 (182)
                      +|.|+|.
T Consensus       118 lviAtG~  124 (335)
T 2a87_A          118 VILAMGA  124 (335)
T ss_dssp             EEECCCE
T ss_pred             EEECCCC
Confidence            6666664

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.34  E-value=1.7e-11  Score=86.57  Aligned_cols=103  Identities=18%  Similarity=0.143  Sum_probs=66.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      .+||+|||||++|+++|+.|++      .|++|+|||+.+..+...                   .              
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~------~g~~v~lie~~~~~~~~~-------------------~--------------   42 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGR------ARKNILLVDAGERRNRFA-------------------S--------------   42 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH------TTCCEEEEECCCCGGGGC-------------------S--------------
T ss_pred             CCCEEEECCCHHHHHHHHHHHh------CCCCEEEEeCCCcccccc-------------------h--------------
Confidence            3799999999999999999999      899999999875322100                   0              


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHc-CcEEecCCccceeEEcCCCcEEE-----EEeCCEEE
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAM-GVEIYPGIPASEVLYHGDGSVKG-----IATGDVGI  175 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi  175 (182)
                            ....+      +.    ....++..+...+.+.+++. +++++. .+|+++..+++++.+.     ....+.+|
T Consensus        43 ------~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~vv  105 (297)
T 3fbs_A           43 ------HSHGF------LG----QDGKAPGEIIAEARRQIERYPTIHWVE-GRVTDAKGSFGEFIVEIDGGRRETAGRLI  105 (297)
T ss_dssp             ------CCCSS------TT----CTTCCHHHHHHHHHHHHTTCTTEEEEE-SCEEEEEEETTEEEEEETTSCEEEEEEEE
T ss_pred             ------hhcCC------cC----CCCCCHHHHHHHHHHHHHhcCCeEEEE-eEEEEEEEcCCeEEEEECCCCEEEcCEEE
Confidence                  00000      00    11344567888888888876 677765 5899997754433221     12335566


Q ss_pred             ecCCC
Q psy2240         176 AKDGS  180 (182)
Q Consensus       176 ~adG~  180 (182)
                      .|.|.
T Consensus       106 iAtG~  110 (297)
T 3fbs_A          106 LAMGV  110 (297)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            66654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.34  E-value=1.1e-11  Score=88.61  Aligned_cols=107  Identities=22%  Similarity=0.269  Sum_probs=69.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+|||+. .++|....                  ..           
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~------~g~~v~lie~~-~~gg~~~~------------------~~-----------   47 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAAR------ANLQPVLITGM-EKGGQLTT------------------TT-----------   47 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT------TTCCCEEECCS-STTGGGGG------------------CS-----------
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH------CCCcEEEEccC-CCCceEec------------------ch-----------
Confidence            45799999999999999999999      89999999975 34432110                  00           


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----EEeCCEEEe
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----IATGDVGIA  176 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----v~~~~~vi~  176 (182)
                             .   ....+.+      ...+.+..+.+.+.+.+++.+++++.++ |+.+..+.+.+.+.    ....+.+|.
T Consensus        48 -------~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~v~~~~~~~~~~~lv~  110 (320)
T 1trb_A           48 -------E---VENWPGD------PNDLTGPLLMERMHEHATKFETEIIFDH-INKVDLQNRPFRLNGDNGEYTCDALII  110 (320)
T ss_dssp             -------B---CCCSTTC------CSSCBHHHHHHHHHHHHHHTTCEEECCC-EEEEECSSSSEEEEESSCEEEEEEEEE
T ss_pred             -------h---hhhCCCC------CCCCCHHHHHHHHHHHHHHCCCEEEEee-eeEEEecCCEEEEEeCCCEEEcCEEEE
Confidence                   0   0000000      1123456788888888888999999986 88887543333220    223456666


Q ss_pred             cCCC
Q psy2240         177 KDGS  180 (182)
Q Consensus       177 adG~  180 (182)
                      |.|.
T Consensus       111 AtG~  114 (320)
T 1trb_A          111 ATGA  114 (320)
T ss_dssp             CCCE
T ss_pred             CCCC
Confidence            6664

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.34  E-value=3.5e-13  Score=100.30  Aligned_cols=138  Identities=14%  Similarity=0.035  Sum_probs=73.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC---CccccccccChhHHhhhhhhHHhcCCCCCccch
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG---GHILSGAVIDPIALNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (182)
                      +..||+|||||++|+++|+.|++      +|++|+|||+.+...   +...+........+..    ....+......  
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~------~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~----~~~lg~~~~~~--   88 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQ------HDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQR----EVALDVNEWPS--   88 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHH------TTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHH----HHHTTCCCSCH--
T ss_pred             CCCCEEEECCcHHHHHHHHHHHH------CCCeEEEEcCCChHhhcccccccchhccchhhhh----hhhcChhhhhh--
Confidence            34799999999999999999999      899999999986321   2111222222222211    11111110000  


Q ss_pred             hhhHHHHHhhccCCCCC--CCCC-CCCCCCccccchHHHHHHHHHHHHHcCcEEecCC-ccceeEEcCCCcEEEEEeCCE
Q psy2240          98 EDKFAYLTKSKRIGIPI--LPGM-PMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGI-PASEVLYHGDGSVKGIATGDV  173 (182)
Q Consensus        98 ~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~-~v~~i~~~~~g~~~~v~~~~~  173 (182)
                        ....+ .........  ...+ .......+.+++..+...|.+.+++.|+++++.. .+.++.....       ..++
T Consensus        89 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~Gv~v~~~~v~~~~l~~~~~-------~ad~  158 (430)
T 3ihm_A           89 --EEFGY-FGHYYYVGGPQPMRFYGDLKAPSRAVDYRLYQPMLMRALEARGGKFCYDAVSAEDLEGLSE-------QYDL  158 (430)
T ss_dssp             --HHHCE-EEEEEEECSSSCEEEEEEEEEEEBEECHHHHHHHHHHHHHHTTCEEEECCCCGGGHHHHHT-------TSSE
T ss_pred             --hcccc-cceeEEECCCCccccchhcCCcceeecHHHHHHHHHHHHHHcCCEEEEEecchhhhhhhcc-------cCCE
Confidence              00000 000000000  0000 0001124677888999999999999999998743 3355432111       3578


Q ss_pred             EEecCCC
Q psy2240         174 GIAKDGS  180 (182)
Q Consensus       174 vi~adG~  180 (182)
                      ||+|+|.
T Consensus       159 VV~AdG~  165 (430)
T 3ihm_A          159 LVVCTGK  165 (430)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            8888886

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.34  E-value=1.2e-11  Score=91.64  Aligned_cols=39  Identities=31%  Similarity=0.544  Sum_probs=36.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ||+|||||++||++|+.|++      +|.+|+||||.+..||...
T Consensus         2 dVvVIGaGiaGLsaA~~La~------~G~~V~vlE~~~~~GG~~~   40 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLAR------NGHEIIVLEKSAMIGGRFT   40 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHH------TTCEEEEECSSSSSCTTSS
T ss_pred             cEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCCCCceeE
Confidence            89999999999999999999      8999999999998887653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.33  E-value=1.6e-11  Score=87.50  Aligned_cols=38  Identities=39%  Similarity=0.691  Sum_probs=34.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG   65 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g   65 (182)
                      .+|||+||||||+|+++|+.|++      .|++|+|||+.. ++|
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~------~g~~V~liE~~~-~gG   42 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASR------ANLKTVMIERGI-PGG   42 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESSC-TTG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH------CCCCEEEEecCC-CCC
Confidence            46999999999999999999999      899999999864 444

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.32  E-value=1.3e-11  Score=87.82  Aligned_cols=87  Identities=29%  Similarity=0.385  Sum_probs=61.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEE-EecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCL-VEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~v-lE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+| +|| +..+|......                            
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~------~g~~v~li~e~-~~~gG~~~~~~----------------------------   47 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATR------GGLKNVVMFEK-GMPGGQITSSS----------------------------   47 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHH------HTCSCEEEECS-SSTTGGGGGCS----------------------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHH------CCCCeEEEEeC-CCCCceeeeec----------------------------
Confidence            34799999999999999999999      7999999 999 44554321100                            


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG  161 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~  161 (182)
                                 ....++.   .   ...+.+..+...+.+.+++.+++++.+ +|+++ .++
T Consensus        48 -----------~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~   90 (315)
T 3r9u_A           48 -----------EIENYPG---V---AQVMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKN   90 (315)
T ss_dssp             -----------CBCCSTT---C---CSCBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EEC
T ss_pred             -----------eeccCCC---C---CCCCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecC
Confidence                       0000000   0   123455688889999999899999988 88888 544

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.32  E-value=1.5e-12  Score=97.73  Aligned_cols=119  Identities=24%  Similarity=0.241  Sum_probs=67.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCC-----ceEEEEecCCCCCCccc---cccccChhHHhhhhhhHHhcCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE-----LKVCLVEKAAEVGGHIL---SGAVIDPIALNELLPDWKDLGAPL   92 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-----~~v~vlE~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~   92 (182)
                      ..+||+|||||++|+++|+.|++      .|     .+|+|||+.+..+....   .+..+....+    .++.    ..
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~------~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~----~~l~----~~   94 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQE------RAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFL----KDLV----SL   94 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHH------HHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTT----SSSS----TT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh------cccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchh----hccc----cc
Confidence            35799999999999999999999      67     89999999987652110   0000100000    0000    00


Q ss_pred             Cccchhh-hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEc
Q psy2240          93 NTPVHED-KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH  160 (182)
Q Consensus        93 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~  160 (182)
                      ..+.... ...++...... ..+      .........+..+.+++...+++.++.++++++|+++..+
T Consensus        95 ~~p~~~~~~~~~l~~~~~~-~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~  156 (463)
T 3s5w_A           95 RNPTSPYSFVNYLHKHDRL-VDF------INLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPM  156 (463)
T ss_dssp             TCTTCTTSHHHHHHHTTCH-HHH------HHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEE
T ss_pred             cCCCCCCChhHhhhhcCce-eec------ccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEe
Confidence            0010011 11111111100 000      0000223456788889988888889999999999999764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.31  E-value=2.5e-12  Score=96.56  Aligned_cols=138  Identities=17%  Similarity=0.166  Sum_probs=76.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCce---EEEEecCCCCCCccccccc--cChhHHhhhhhhHHhcCCCCCccch
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELK---VCLVEKAAEVGGHILSGAV--IDPIALNELLPDWKDLGAPLNTPVH   97 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~---v~vlE~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   97 (182)
                      .||+|||||++|+++|..|++.. +  .|++   |+|||+.+..||.+.....  ..+.........+...    .....
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~-~--~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l----~~~~~   75 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQ-E--KGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYL----WSNGP   75 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHH-H--TTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTC----BCSSC
T ss_pred             CcEEEECccHHHHHHHHHHHhhh-h--cCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccch----hhcCC
Confidence            58999999999999999998721 0  3788   9999999888765432110  0000000000000000    00000


Q ss_pred             hhhHHHHHhhccCCCCCCCCCCCC----CCCccccchHHHHHHHHHHHHHcCcE--EecCCccceeEEcCCC--cEEE--
Q psy2240          98 EDKFAYLTKSKRIGIPILPGMPMN----NHGNYVVRLGHVVKWLGEQAEAMGVE--IYPGIPASEVLYHGDG--SVKG--  167 (182)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~gv~--i~~~~~v~~i~~~~~g--~~~~--  167 (182)
                      ...         ..   +.+++..    ......+++..+.++|.+.+++.|++  ++++++|+++..++++  +.+.  
T Consensus        76 ~~~---------~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~  143 (464)
T 2xve_A           76 KEC---------LE---FADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQ  143 (464)
T ss_dssp             GGG---------TC---BTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEE
T ss_pred             hhh---------cc---cCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEE
Confidence            000         00   0000000    00123456778999999999888987  9999999999875442  2221  


Q ss_pred             --------EEeCCEEEecCC
Q psy2240         168 --------IATGDVGIAKDG  179 (182)
Q Consensus       168 --------v~~~~~vi~adG  179 (182)
                              ....+.||.|.|
T Consensus       144 ~~~~g~~~~~~~d~VVvAtG  163 (464)
T 2xve_A          144 DHTTDTIYSEEFDYVVCCTG  163 (464)
T ss_dssp             ETTTTEEEEEEESEEEECCC
T ss_pred             EcCCCceEEEEcCEEEECCC
Confidence                    223466777777

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.28  E-value=1.6e-11  Score=92.85  Aligned_cols=51  Identities=33%  Similarity=0.533  Sum_probs=40.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI   76 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~   76 (182)
                      ++++||+|||||++|+++|+.|++      .|.+|+|||+.+..||.....+++...
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~------~G~~V~liEk~~~~GG~~~~~gciP~k   73 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQ------LGMKVAVVEKRSTYGGTCLNVGCIPSK   73 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHH------TTCCEEEEESSSSSSHHHHHHSHHHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCCccccccchhhH
Confidence            456899999999999999999999      899999999988888765544444333

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.27  E-value=4.8e-12  Score=95.12  Aligned_cols=48  Identities=31%  Similarity=0.531  Sum_probs=40.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID   74 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~   74 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+||||.+..||.....+++.
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~------~G~~V~liEk~~~~GG~~~~~gciP   50 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAK------AKYNVLMADPKGELGGNCLYSGCVP   50 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECTTSSSSHHHHHHSHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHh------CCCeEEEEECCCCCCCcccccCCCc
Confidence            46899999999999999999999      8999999998888887655444443

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.26  E-value=4.6e-11  Score=90.16  Aligned_cols=49  Identities=39%  Similarity=0.624  Sum_probs=40.3

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI   73 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~   73 (182)
                      |+..+||+|||||++|+++|+.|++      .|.+|+|||+.+..+|...+.+++
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~------~G~~V~liE~~~~~GG~~~~~g~~   51 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAAD------EGLKVAIVERYKTLGGVCLNVGCI   51 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESSSCSSHHHHHHSHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHh------CCCeEEEEeCCCCCCCceeeeccc
Confidence            3456899999999999999999999      899999999987777654433343

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.26  E-value=1.6e-11  Score=92.99  Aligned_cols=127  Identities=22%  Similarity=0.358  Sum_probs=69.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhh--------hcCCCceEEEEecCCCCC---CccccccccChhHHhhhhhhHHhc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAE--------KDGKELKVCLVEKAAEVG---GHILSGAVIDPIALNELLPDWKDL   88 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~--------~~~~g~~v~vlE~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~   88 (182)
                      +.-+||||||+||+||++|++|.+...        ....+..++.+||.+..+   +....+..+....+    .++.. 
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl----~Dlvt-  111 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFI----KDLAT-  111 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGG----GSSST-
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccch----hhhcc-
Confidence            445899999999999999999987311        011234677888876543   11111111111111    11100 


Q ss_pred             CCCCCccchhhhH-HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC
Q psy2240          89 GAPLNTPVHEDKF-AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG  161 (182)
Q Consensus        89 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~  161 (182)
                         +.++-....+ .++.....+ .      ++.......+.+.++.++|...+++.+..|+++++|++++.++
T Consensus       112 ---l~~P~s~~sf~~yl~~~~rl-~------~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~  175 (501)
T 4b63_A          112 ---LRDPRSSFTFLNYLHQKGRL-I------HFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGK  175 (501)
T ss_dssp             ---TTCTTCTTSHHHHHHHHTCH-H------HHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEEC
T ss_pred             ---ccCCCCccchHHHHHHhCCc-c------CCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeecccc
Confidence               1111111111 111111110 0      0011114456788999999999998888899999999997644

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.26  E-value=4.3e-12  Score=96.26  Aligned_cols=48  Identities=31%  Similarity=0.513  Sum_probs=40.0

Q ss_pred             cccccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        16 ~~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      |+..++++||+|||||++||++|+.|++.     .|.+|+|||+++.+||...
T Consensus         4 Ms~p~~~~DVvIIGaGisGLsaA~~L~k~-----~G~~V~VlE~~~~~GG~~~   51 (513)
T 4gde_A            4 MTHPDISVDVLVIGAGPTGLGAAKRLNQI-----DGPSWMIVDSNETPGGLAS   51 (513)
T ss_dssp             --CCSEEEEEEEECCSHHHHHHHHHHHHH-----CCSCEEEEESSSSCCGGGC
T ss_pred             CCCCCCCCCEEEECCcHHHHHHHHHHHhh-----CCCCEEEEECCCCCcCCee
Confidence            33445678999999999999999999872     4899999999999998653

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.25  E-value=3.3e-11  Score=91.70  Aligned_cols=37  Identities=32%  Similarity=0.423  Sum_probs=33.6

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++..+||+|||||++|+++|+.|++      .|.+|+|||+.+
T Consensus        29 ~~~~~DVvVIGgGpaGl~aA~~la~------~G~~V~liEk~~   65 (519)
T 3qfa_A           29 KSYDYDLIIIGGGSGGLAAAKEAAQ------YGKKVMVLDFVT   65 (519)
T ss_dssp             SSCSEEEEEECCSHHHHHHHHHHHH------TTCCEEEECCCC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHh------CCCeEEEEeccC
Confidence            3456899999999999999999999      899999999964

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.25  E-value=1.7e-11  Score=92.34  Aligned_cols=51  Identities=41%  Similarity=0.619  Sum_probs=41.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChh
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPI   76 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~   76 (182)
                      +..+||+|||||++|+++|+.|++      .|++|+|||+.+..+|.....+++...
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~------~G~~V~liE~~~~~GG~~~~~g~~psk   53 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQ------LGFNTACVEKRGKLGGTCLNVGCIPSK   53 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESSSSSSHHHHHHSHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCcCCccceeccHHHH
Confidence            446899999999999999999999      899999999987777655444444333

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.24  E-value=1.1e-10  Score=83.01  Aligned_cols=84  Identities=29%  Similarity=0.357  Sum_probs=59.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      ++||+|||||++|+++|+.|++      .|++|+|||+.  .+|.....                 .             
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~------~g~~v~li~~~--~gG~~~~~-----------------~-------------   42 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSAR------KGIRTGLMGER--FGGQILDT-----------------V-------------   42 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHT------TTCCEEEECSS--TTGGGGGC-----------------C-------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHH------CCCcEEEEeCC--CCceeccc-----------------c-------------
Confidence            3799999999999999999999      89999999863  34322100                 0             


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY  159 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~  159 (182)
                               ..+.+   ..    ....++..+.+.+.+.+++.+++++.+++|+.+..
T Consensus        43 ---------~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~   84 (310)
T 1fl2_A           43 ---------DIENY---IS----VPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIP   84 (310)
T ss_dssp             ---------EECCB---TT----BSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEEC
T ss_pred             ---------ccccc---cC----cCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEe
Confidence                     00000   00    11234567888888888888999999999999865

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.21  E-value=1e-10  Score=88.31  Aligned_cols=46  Identities=22%  Similarity=0.348  Sum_probs=37.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI   73 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~   73 (182)
                      ..+||+|||||++|+++|+.|++      .|.+|+|||+ ...||.....+++
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~------~G~~V~liEk-~~~GG~~~~~gci   70 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGA------LGKRVAIAEE-YRIGGTCVIRGCV   70 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH------TTCCEEEEES-SCTTHHHHHHSHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh------CcCEEEEEeC-CCCCCceeccCcc
Confidence            36899999999999999999999      8999999999 4566654433443

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.21  E-value=9e-11  Score=88.27  Aligned_cols=48  Identities=44%  Similarity=0.675  Sum_probs=40.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID   74 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~   74 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+|||+.+..+|.....+++.
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~------~g~~V~liE~~~~~GG~~~~~g~~p   52 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQ------LGFKTTCIEKRGALGGTCLNVGCIP   52 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH------HTCCEEEEECSSSSCCSHHHHSHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCCccccccCcCccc
Confidence            45799999999999999999999      7999999999988887654444443

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=99.19  E-value=1.7e-11  Score=88.06  Aligned_cols=48  Identities=38%  Similarity=0.670  Sum_probs=39.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV   72 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~   72 (182)
                      .++||+||||||+|+++|+.|++.    ..|++|+||||.+.+||....++.
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~----r~G~~V~viEk~~~~GG~~~~~~~  111 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKN----RPDLKVCIIESSVAPGGGSWLGGQ  111 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHH----CTTSCEEEECSSSSCCTTTTCCST
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHh----CCCCeEEEEECCCCCCceEEeCCc
Confidence            357999999999999999999751    159999999999988887654443

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.19  E-value=6.1e-11  Score=89.15  Aligned_cols=46  Identities=41%  Similarity=0.662  Sum_probs=39.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI   73 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~   73 (182)
                      ++||+|||||++|+++|+.|++      .|.+|+|||+.+..||.....+++
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~------~g~~V~lie~~~~~GG~~~~~g~~   47 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQ------LGMKTACVEKRGALGGTCLNVGCI   47 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESSSSSSHHHHHHSHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCCcCCcCCCcCcH
Confidence            4799999999999999999999      899999999998787755443443

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.19  E-value=1.4e-10  Score=87.63  Aligned_cols=35  Identities=29%  Similarity=0.508  Sum_probs=32.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ..++||+|||||++|+++|+.|++      .|.+|+||||.
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~------~G~~V~liEk~   38 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQ------LGKKVAVADYV   38 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh------CCCeEEEEEec
Confidence            346899999999999999999999      89999999983

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.19  E-value=2.3e-10  Score=87.13  Aligned_cols=44  Identities=23%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ++..+||+|||||++|+++|+.|++      .|.+|+|||+.+..||...
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~------~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRA------MGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHH------TTCCEEEEESSSSSSCHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHH------CCCCEEEEeCCCCCCCccc
Confidence            3456899999999999999999999      8999999999986776543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.18  E-value=4.4e-11  Score=89.85  Aligned_cols=39  Identities=44%  Similarity=0.602  Sum_probs=34.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      .+||+|||||++|+++|+.|++      .|++|+|||+. ..+|..
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~------~G~~V~liE~~-~~gG~~   41 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQ------LGLSTAIVEPK-YWGGVC   41 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSS-CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHh------CCCeEEEEeCC-CCCCcc
Confidence            5799999999999999999999      89999999998 455443

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.18  E-value=1.8e-10  Score=86.78  Aligned_cols=48  Identities=25%  Similarity=0.469  Sum_probs=38.7

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI   73 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~   73 (182)
                      ++..+||+|||||++|+++|+.|++      .|.+|+|||+. ..||.....+++
T Consensus        17 ~~~~~dVvIIGgG~aGl~aA~~la~------~G~~V~liE~~-~~GG~~~~~gc~   64 (478)
T 3dk9_A           17 AVASYDYLVIGGGSGGLASARRAAE------LGARAAVVESH-KLGGTCVNVGCV   64 (478)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHH------TTCCEEEEESS-CTTHHHHHHSHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHh------CCCeEEEEecC-CCCCcccccCcc
Confidence            3456899999999999999999999      89999999987 456554433443

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.18  E-value=5e-11  Score=89.87  Aligned_cols=47  Identities=30%  Similarity=0.482  Sum_probs=37.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI   73 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~   73 (182)
                      +.++||+|||||++|+++|+.|++      .|.+|+|||+. ..+|...+.+++
T Consensus         9 ~~~~dVvVIGgG~aGl~aA~~l~~------~g~~V~liE~~-~~GG~~~n~gci   55 (479)
T 2hqm_A            9 TKHYDYLVIGGGSGGVASARRAAS------YGAKTLLVEAK-ALGGTCVNVGCV   55 (479)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH------TSCCEEEEESS-CTTHHHHHHSHH
T ss_pred             cccCCEEEEcCCHHHHHHHHHHHH------CCCcEEEEeCC-CcCCcCcccCcH
Confidence            456899999999999999999999      89999999997 456544433443

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.18  E-value=1.1e-10  Score=87.95  Aligned_cols=41  Identities=39%  Similarity=0.600  Sum_probs=36.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      .++||+|||||++|+++|+.|++      .|++|+|||+.+..+|..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~------~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQ------LGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH------HTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh------CCCEEEEEeCCCccCCCC
Confidence            46899999999999999999999      799999999998666554

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.17  E-value=1.2e-10  Score=88.25  Aligned_cols=46  Identities=30%  Similarity=0.587  Sum_probs=37.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCC---CceEEEEecCCCCCCccccccccC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGK---ELKVCLVEKAAEVGGHILSGAVID   74 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~---g~~v~vlE~~~~~~g~~~~~~~~~   74 (182)
                      .+||+|||||++|+++|+.|++      .   |.+|+|||+.+ .||.....++++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~------~~~~G~~V~liE~~~-~GG~~~~~g~~p   50 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAAT------SHPETTQVTVIDCDG-IGGAAVLDDCVP   50 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH------HCTTTEEEEEEESSC-TTHHHHHTSHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHh------CCCCcCEEEEEeCCC-cCCcccCcCccc
Confidence            4799999999999999999999      6   89999999987 666544334433

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=99.17  E-value=3.1e-10  Score=87.18  Aligned_cols=37  Identities=30%  Similarity=0.567  Sum_probs=33.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..+||+||||||.+||.+|..|++-     .+.+|+|||+.+
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~-----~~~~VLlLEaG~   53 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTEN-----PNISVLVIESGS   53 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTS-----TTCCEEEECSSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhC-----CCCcEEEEecCC
Confidence            4579999999999999999999961     478999999987

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.17  E-value=4.6e-10  Score=85.47  Aligned_cols=85  Identities=27%  Similarity=0.364  Sum_probs=60.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+|+|+.  .+|.....                 ..           
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~------~G~~v~lie~~--~GG~~~~~-----------------~~-----------  254 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSAR------KGIRTGLMGER--FGGQVLDT-----------------VD-----------  254 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSS--TTGGGTTC-----------------SC-----------
T ss_pred             CcccEEEECCcHHHHHHHHHHHh------CCCeEEEEECC--CCCccccc-----------------cc-----------
Confidence            46899999999999999999999      89999999863  34321100                 00           


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY  159 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~  159 (182)
                                 .+.+..       ....++..+...+.+.+++.|++++.+++|+++..
T Consensus       255 -----------~~~~~~-------~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~  295 (521)
T 1hyu_A          255 -----------IENYIS-------VPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVP  295 (521)
T ss_dssp             -----------BCCBTT-------BSSBCHHHHHHHHHHHHHTSCEEEECSCCEEEEEC
T ss_pred             -----------ccccCC-------CCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEe
Confidence                       000000       01134567888888889889999999999999864

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.17  E-value=3.6e-11  Score=90.03  Aligned_cols=45  Identities=22%  Similarity=0.284  Sum_probs=40.8

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      .|+.++||+|||+|++||++|+.|++      +|.+|+|||+++..||...
T Consensus         7 ~~~~~~dvvVIGaG~~GL~aA~~La~------~G~~V~vlE~~~~~GG~~~   51 (453)
T 2bcg_G            7 TIDTDYDVIVLGTGITECILSGLLSV------DGKKVLHIDKQDHYGGEAA   51 (453)
T ss_dssp             CCCCBCSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCGGGC
T ss_pred             hccccCCEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCCCCCcccc
Confidence            45567899999999999999999999      8999999999999998764

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.17  E-value=1.5e-10  Score=87.23  Aligned_cols=49  Identities=37%  Similarity=0.542  Sum_probs=40.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID   74 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~   74 (182)
                      +..+||+|||||++|+++|+.|++      .|.+|+|||+.+..||.....++++
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~------~g~~V~liE~~~~~GG~~~~~g~~P   52 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQ------LGFKTVCIEKNETLGGTCLNVGCIP   52 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHH------TTCCEEEEECSSSSSHHHHHHSHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHh------CCCeEEEEeCCCCcCCcccccCccc
Confidence            345899999999999999999999      8999999999988877654444433

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.16  E-value=2e-10  Score=86.21  Aligned_cols=45  Identities=22%  Similarity=0.389  Sum_probs=37.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI   73 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~   73 (182)
                      .+||+|||||++|+++|+.|++      .|++|+|||+ ...||.....+++
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~------~G~~V~liEk-~~~GG~~~~~gci   49 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAA------LGKKVAIAEE-FRYGGTCVIRGCV   49 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHT------TTCCEEEEES-SCTTHHHHHHSHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHh------CCCEEEEEeC-CCCCCcccccCch
Confidence            5899999999999999999999      8999999999 5566654443443

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.12  E-value=7.5e-11  Score=89.90  Aligned_cols=53  Identities=26%  Similarity=0.447  Sum_probs=41.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC--------CCCccccccccChhHHh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE--------VGGHILSGAVIDPIALN   79 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~--------~~g~~~~~~~~~~~~~~   79 (182)
                      .+||++|||+|++|.++|..+++      .|.+|+|||+...        .||...+-++++++.+.
T Consensus        41 ydYDviVIG~GpaG~~aA~~aa~------~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~  101 (542)
T 4b1b_A           41 YDYDYVVIGGGPGGMASAKEAAA------HGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMH  101 (542)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHT------TTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccccccccccCCCCCcccccchHHHHHHH
Confidence            36899999999999999999999      8999999998653        45444455666665553

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.11  E-value=1.4e-10  Score=86.81  Aligned_cols=38  Identities=34%  Similarity=0.552  Sum_probs=33.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      .||+|||||++|+++|+.|++.    ++|.+|+|||+.+..+
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~----~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKK----YPQAEISLIDKQATVG   40 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----CSSSEEEEECSSSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhh----CcCCcEEEEECCCCCc
Confidence            4899999999999999999982    1389999999998654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.11  E-value=1.3e-10  Score=89.67  Aligned_cols=41  Identities=29%  Similarity=0.507  Sum_probs=34.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      +...||+|||||++|+++|+.|++.    +.|.+|+|||+.+..+
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~----~~g~~V~vie~~~~~~   74 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRL----SEEDEIIMVERGEYIS   74 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHH----CSSSEEEEECSSSCSS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhh----CcCCCEEEEECCCCcc
Confidence            3456899999999999999999982    1389999999987653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.11  E-value=4.4e-10  Score=84.40  Aligned_cols=45  Identities=44%  Similarity=0.635  Sum_probs=37.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI   73 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~   73 (182)
                      .+||+|||||++|+++|..|++      .|.+|+|||+.+ .||.....+++
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~------~g~~V~lie~~~-~GG~~~~~g~i   50 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQ------LGLKVLAVEAGE-VGGVCLNVGCI   50 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESSC-TTHHHHHTSHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCC-CCCCCCCcChH
Confidence            5899999999999999999999      899999999987 56544333333

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.11  E-value=7e-11  Score=87.10  Aligned_cols=43  Identities=26%  Similarity=0.512  Sum_probs=38.4

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCC-CceEEEEecCCCCCCcc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGK-ELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~~v~vlE~~~~~~g~~   67 (182)
                      |...+||+|||||++|+++|+.|++      . |.+|+|||+++..||..
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~------~~g~~v~v~E~~~~~GG~~   47 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVAT------QLDKRVLVLERRPHIGGNA   47 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHH------HSCCCEEEECSSSSSSGGG
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHH------hCCCCEEEEeCCCCCCCee
Confidence            4446899999999999999999999      6 89999999999888765

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.10  E-value=8.8e-10  Score=82.66  Aligned_cols=41  Identities=41%  Similarity=0.658  Sum_probs=35.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ..+||+|||||++|+++|..|++      .|.+|+|||+ ...||...
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~------~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQ------LGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH------HTCCEEEECS-SCTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH------CCCEEEEEcc-CCCCCcCC
Confidence            45799999999999999999999      7899999999 55666543

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=99.09  E-value=4.8e-10  Score=86.11  Aligned_cols=37  Identities=41%  Similarity=0.530  Sum_probs=33.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAE   62 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~   62 (182)
                      ..+||+||||||.+||.+|..|++      .+ .+|+|||+.+.
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse------~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAE------NPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTT------STTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHh------CCCCcEEEEecCCC
Confidence            356999999999999999999998      66 79999999875

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.09  E-value=9.9e-10  Score=82.30  Aligned_cols=45  Identities=42%  Similarity=0.642  Sum_probs=36.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI   73 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~   73 (182)
                      ++||+|||||++|+++|..|++      .|.+|+|||+. ..+|.....+++
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~------~g~~V~lie~~-~~gG~~~~~g~~   47 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQ------LGQKVTIVEKG-NLGGVCLNVGCI   47 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH------TTCCEEEEESS-CTTHHHHHTSHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHh------CCCeEEEEECC-CCCCcCcCcCch
Confidence            4799999999999999999999      89999999998 556544333333

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.08  E-value=1.3e-09  Score=82.57  Aligned_cols=45  Identities=42%  Similarity=0.716  Sum_probs=36.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI   73 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~   73 (182)
                      ++||+|||||++|+++|+.|++      .|.+|+|||+.+ .||.....+++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~------~g~~V~liE~~~-~GG~c~~~gc~   46 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAAR------HNAKVALVEKSR-LGGTCVNVGCV   46 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH------TTCCEEEEESSS-TTHHHHHTSHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCC-cCccccccCCc
Confidence            4799999999999999999999      899999999984 55544333333

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.06  E-value=1.9e-09  Score=81.33  Aligned_cols=35  Identities=26%  Similarity=0.424  Sum_probs=31.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      +..+||+|||||++|+++|+.|++      .|.+|+||||.
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~------~G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVL------NGARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHH------TTCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH------CCCEEEEEEec
Confidence            356899999999999999999999      89999999953

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.06  E-value=1.1e-09  Score=82.30  Aligned_cols=48  Identities=29%  Similarity=0.538  Sum_probs=39.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID   74 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~   74 (182)
                      +..+||+|||||++|+++|+.|++      .|.+|+|||+. ..||.....++++
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~------~g~~V~lie~~-~~GG~~~~~g~ip   49 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVE------QGAQVTLIERG-TIGGTCVNVGCVP   49 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESS-STTHHHHHHSHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH------CCCEEEEEeCC-CCCccccCCCccc
Confidence            346899999999999999999999      89999999998 5676554444443

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.05  E-value=1.7e-10  Score=85.72  Aligned_cols=40  Identities=38%  Similarity=0.592  Sum_probs=36.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      +||+|||||++|+++|+.|++      .|.+|+|||+++..||...
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~------~G~~V~vlE~~~~~GG~~~   41 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTN------AGKKVLLLEGGERLGGRAY   41 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHH------TTCCEEEECSSSSSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHH------cCCeEEEEecCCCccCeec
Confidence            699999999999999999999      8999999999888887653

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.05  E-value=1.1e-10  Score=88.28  Aligned_cols=40  Identities=33%  Similarity=0.566  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      .+|+|||||++||++|+.|++      +|++|+|||+++.+||...
T Consensus         2 k~VvVIGaG~~GL~aA~~La~------~G~~V~VlEa~~~~GG~~~   41 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQA------AGIPVLLLEQRDKPGGRAY   41 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHH------TTCCEEEECCC-------C
T ss_pred             CCEEEECCcHHHHHHHHHHHH------CCCcEEEEccCCCCCCcEE
Confidence            369999999999999999999      8999999999999988653

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=99.05  E-value=5.2e-10  Score=84.58  Aligned_cols=38  Identities=16%  Similarity=0.283  Sum_probs=33.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCC---ceEEEEecCCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE---LKVCLVEKAAEVG   64 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g---~~v~vlE~~~~~~   64 (182)
                      +.+||+|||||++|+++|..|++      .|   .+|+|||+.+..+
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~------~g~~~~~V~lie~~~~~~   74 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLT------NYGDANEIVVFDQNSNIS   74 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH------HHGGGSEEEEECSSSCCS
T ss_pred             cCCcEEEECCCHHHHHHHHHHHh------cCCCCCeEEEEECCCCCC
Confidence            35899999999999999999998      56   8999999987543

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.03  E-value=2.6e-10  Score=86.75  Aligned_cols=41  Identities=46%  Similarity=0.708  Sum_probs=37.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+||+|||||++|+++|+.|++      .|.+|+|||+++..||..
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~------~G~~V~vlE~~~~~GGr~   43 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHD------SGLNVVVLEARDRVGGRT   43 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHH------TTCCEEEECSSSSSBTTC
T ss_pred             CCceEEEECCCHHHHHHHHHHHH------CCCCEEEEeCCCCCCCce
Confidence            45799999999999999999999      899999999999888765

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.03  E-value=2.4e-10  Score=86.95  Aligned_cols=41  Identities=34%  Similarity=0.554  Sum_probs=37.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~~~g~~   67 (182)
                      ...||+|||||++||++|+.|++      .| .+|+|||+.+.+||..
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~------~G~~~V~VlEa~~riGGr~   48 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQ------NGIQDCLVLEARDRVGGRL   48 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHH------TTCCSEEEECSSSSSBTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh------cCCCCEEEEeCCCCCCCce
Confidence            45799999999999999999999      89 9999999999999865

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=99.02  E-value=4.3e-09  Score=76.54  Aligned_cols=110  Identities=20%  Similarity=0.179  Sum_probs=65.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccc---------ccChh----HHhhhhhhHHhcC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGA---------VIDPI----ALNELLPDWKDLG   89 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~---------~~~~~----~~~~~~~~~~~~~   89 (182)
                      .||+|||||++|+.+|+.|++      .|.+|+|+|+.+.........+         .+...    ..-.+....+..+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~------~G~~V~liE~~~~~~tp~h~~d~i~eL~CnpSigG~~~~~akGlL~~EIdaLG   75 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLR------LGVPVRLFEMRPKRMTPAHGTDRFAEIVCSNSLGGEGETNAKGLLQAEMRRAG   75 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH------TTCCEEEECCTTTSCCSSCCSSCTTCCCSCCEEEECSTTCHHHHHHHHHHHHT
T ss_pred             CCEEEECchHHHHHHHHHHHH------CCCcEEEEeccCCcCCccccCCCccccccCcCCCccccccchhHHHHHHHHcC
Confidence            589999999999999999999      8999999999874432211110         00000    0000011111110


Q ss_pred             CCCCccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH-cCcEEecCCccceeE
Q psy2240          90 APLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA-MGVEIYPGIPASEVL  158 (182)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~v~~i~  158 (182)
                               ..+.........  +   .     .....++|..+.+.+.+.++. .+++++ +.+|++|.
T Consensus        76 ---------g~m~~~aD~~~i--p---A-----g~al~vDR~~f~~~~~~~le~~pni~l~-q~eV~~l~  125 (443)
T 3g5s_A           76 ---------SLVMEAADLARV--P---A-----GGALAVDREEFSGYITERLTGHPLLEVV-REEVREIP  125 (443)
T ss_dssp             ---------CHHHHHHHHSEE--C---C-----TTEEEECHHHHHHHHHHHHHTCTTEEEE-CSCCCSCC
T ss_pred             ---------ChHhhhhhhcCC--C---C-----CccccCCcHHHHHHHHHHHHcCCCeEEE-hhhhhhhc
Confidence                     111111111111  1   1     113469999999999999977 568887 56888884

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.02  E-value=4.3e-10  Score=83.43  Aligned_cols=42  Identities=33%  Similarity=0.614  Sum_probs=37.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~~~g~~~   68 (182)
                      ...||+|||||++|+++|+.|++      .| .+|+|+|+.+.+||...
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~------~g~~~v~v~E~~~~~GG~~~   47 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQ------AGFHDYTILERTDHVGGKCH   47 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH------TTCCCEEEECSSSCSSTTCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh------CCCCcEEEEECCCCCCCccc
Confidence            45799999999999999999999      89 89999999998887653

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.01  E-value=4.2e-10  Score=82.60  Aligned_cols=43  Identities=33%  Similarity=0.491  Sum_probs=38.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ...+||+|||||++|+++|+.|++      .|.+|+|||+.+..||...
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~------~g~~v~v~E~~~~~GG~~~   69 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLAS------SGQRVLIVDRRPHIGGNAY   69 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSSGGGC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHH------CCCceEEEeccCCCCCccc
Confidence            356899999999999999999999      8999999999988887653

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.01  E-value=3.2e-10  Score=85.28  Aligned_cols=40  Identities=43%  Similarity=0.692  Sum_probs=36.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCCCCCCccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAAEVGGHIL   68 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~~~~g~~~   68 (182)
                      .||+|||||++||++|+.|++      +|.  +|+|||+++..||...
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~------~G~~~~V~vlEa~~~~GG~~~   44 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSR------APCPPKVVLVESSERLGGWIR   44 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHT------SSSCCEEEEECSSSSSBTTCC
T ss_pred             ceEEEECCcHHHHHHHHHHHh------CCCCCcEEEEeCCCCCCCceE
Confidence            589999999999999999999      898  9999999998887653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.00  E-value=2.2e-10  Score=85.90  Aligned_cols=40  Identities=45%  Similarity=0.749  Sum_probs=36.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCC------ceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKE------LKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g------~~v~vlE~~~~~~g~~   67 (182)
                      .+||+|||||++||++|+.|++      .|      .+|+|||+.+..||..
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~------~G~~~~~~~~V~vlEa~~~~GG~~   50 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEK------EIKEKNLPLELTLVEASPRVGGKI   50 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH------HHTTTTCSEEEEEECSSSSSCTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHH------hccccCCCCCEEEEECCCCCCceE
Confidence            4799999999999999999999      67      9999999998888754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.00  E-value=6.4e-10  Score=82.38  Aligned_cols=37  Identities=43%  Similarity=0.697  Sum_probs=32.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCce--EEEEecCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELK--VCLVEKAAEV   63 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~--v~vlE~~~~~   63 (182)
                      ..+||+|||||++|+++|..|++      .|.+  |+|||+.+..
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~------~g~~~~V~lie~~~~~   46 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQ------NGFEGRVLVIGREPEI   46 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH------TTCCSCEEEEESSSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHc------cCcCCCEEEEecCCCC
Confidence            45799999999999999999999      7776  9999998754

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.00  E-value=5.2e-10  Score=84.47  Aligned_cols=42  Identities=36%  Similarity=0.718  Sum_probs=38.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      +...||+|||||++||++|+.|++      .|.+|+|||+.+..||..
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~------~g~~v~v~E~~~~~GG~~   50 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQK------AGYKVTVLEARTRPGGRV   50 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSCTTC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH------CCCCEEEEeccCCCCCce
Confidence            346799999999999999999999      899999999999988864

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.99  E-value=6.3e-10  Score=83.72  Aligned_cols=38  Identities=32%  Similarity=0.554  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ..||+|||||++|+++|+.|++.    ++|.+|+|||+.+..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~----~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRL----DPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHH----CTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhh----CcCCCEEEEECCCcc
Confidence            35899999999999999999982    138999999998764

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.98  E-value=8.4e-10  Score=83.46  Aligned_cols=40  Identities=33%  Similarity=0.578  Sum_probs=37.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      +||+|||||++|+++|+.|++      .|++|+|||+.+.+||...
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~------~g~~v~v~E~~~~~GGr~~   79 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTV------AGFKTLLLEARDRIGGRSW   79 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHH------TTCCEEEECSSSBSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHH------CCCCEEEEeCCCCCCCcce
Confidence            799999999999999999999      8999999999999888653

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.98  E-value=7.6e-10  Score=80.64  Aligned_cols=41  Identities=34%  Similarity=0.519  Sum_probs=37.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC-CCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA-AEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~-~~~~g~~   67 (182)
                      ...||+|||||++|+++|+.|++      .|++|+|||+. +..||..
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~------~G~~V~VlE~~~~~vGGr~   84 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTR------AGHDVTILEANANRVGGRI   84 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHH------TSCEEEEECSCSSCCBTTC
T ss_pred             CCceEEEECCCHHHHHHHHHHHH------CCCcEEEEeccccccCCce
Confidence            45799999999999999999999      89999999999 7777754

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.97  E-value=1.4e-09  Score=82.23  Aligned_cols=39  Identities=51%  Similarity=0.857  Sum_probs=35.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      ..+||+|||||++|+++|+.|++      . .+|+|||+.+..+|.
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~------~-~~V~vie~~~~~GG~  145 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQ------Y-LTVALIEERGWLGGD  145 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTT------T-CCEEEECTTSSSSCS
T ss_pred             ccCCEEEECccHHHHHHHHHHHh------c-CCEEEEeCCCCCCCe
Confidence            45799999999999999999999      7 999999999877654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.97  E-value=3.5e-09  Score=80.18  Aligned_cols=34  Identities=26%  Similarity=0.510  Sum_probs=30.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEe
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE   58 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE   58 (182)
                      ...+||+|||||++|+++|+.|++.     .|++|+|||
T Consensus         5 ~~~~dvvVIGgG~aGl~aA~~la~~-----~G~~V~liE   38 (495)
T 2wpf_A            5 SKAFDLVVIGAGSGGLEAGWNAATL-----YGKRVAVVD   38 (495)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHH-----HCCCEEEEE
T ss_pred             ccccCEEEECCChhHHHHHHHHHHh-----cCCeEEEEe
Confidence            3468999999999999999999872     378999999

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.96  E-value=8.2e-10  Score=82.60  Aligned_cols=39  Identities=46%  Similarity=0.650  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      ..||+|||||++|+++|+.|++.    +.|.+|+|||+.+..+
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~----~~~~~V~vie~~~~~~   41 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRL----KPEWDVKVFEATEWVS   41 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH----CTTSEEEEECSSSCCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHh----CcCCCEEEEECCCccc
Confidence            46899999999999999999982    2378999999987543

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.96  E-value=7.8e-10  Score=82.82  Aligned_cols=45  Identities=20%  Similarity=0.232  Sum_probs=39.8

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      .|+..+||+|||+|++|+++|+.|++      .|.+|++|||.+..||...
T Consensus        16 ~~~~~~dv~iiG~G~~g~~~a~~l~~------~g~~v~~~e~~~~~Gg~~~   60 (475)
T 3p1w_A           16 FQGEHYDVIILGTGLKECILSGLLSH------YGKKILVLDRNPYYGGETA   60 (475)
T ss_dssp             -CCCEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCGGGC
T ss_pred             cccccCCEEEECCCHHHHHHHHHHHH------CCCcEEEEeccCCCCCCcc
Confidence            45667999999999999999999999      8999999999998887643

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.96  E-value=6.2e-10  Score=83.77  Aligned_cols=43  Identities=33%  Similarity=0.570  Sum_probs=37.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ...+||+|||||++|+++|+.|++      .|.+|+|||+.+..||...
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~------~g~~v~v~E~~~~~GGr~~   56 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRS------RGTDAVLLESSARLGGAVG   56 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHT------TTCCEEEECSSSSSBTTCC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHH------CCCCEEEEEcCCCCCceee
Confidence            345799999999999999999999      8999999999999888653

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.95  E-value=6.7e-10  Score=83.58  Aligned_cols=40  Identities=38%  Similarity=0.634  Sum_probs=36.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~~~~g~~   67 (182)
                      .+||+|||||++|+++|+.|++      .|  .+|+|||+.+..||..
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~------~g~~~~v~v~E~~~~~GG~~   45 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAER------AFPDLNITLLEAGERLGGKV   45 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHH------HCTTSEEEEECSSSSSBTTC
T ss_pred             cccEEEECCCHHHHHHHHHHHH------hCCCCCEEEEECCCCCCcee
Confidence            5799999999999999999999      67  9999999998887753

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.95  E-value=7.7e-10  Score=82.73  Aligned_cols=41  Identities=44%  Similarity=0.703  Sum_probs=37.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+||+|||||++|+++|+.|++      .|.+|+|||+.+..||..
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~------~g~~v~v~E~~~~~GG~~   44 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRK------AGLSVAVIEARDRVGGRT   44 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH------CCCcEEEEECCCCCCCce
Confidence            45799999999999999999999      899999999999888765

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.94  E-value=9.2e-10  Score=83.41  Aligned_cols=42  Identities=33%  Similarity=0.617  Sum_probs=37.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ...+||+|||||++||++|+.|++      +|++|+|||+.+..||..
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~------~g~~v~v~E~~~~~GG~~   52 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKI------HGLNVTVFEAEGKAGGKL   52 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHT------TSCEEEEECSSSSSCSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH------CCCcEEEEEeCCCCCCce
Confidence            345799999999999999999999      899999999999988764

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.94  E-value=3.1e-09  Score=79.11  Aligned_cols=36  Identities=36%  Similarity=0.478  Sum_probs=32.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~~   62 (182)
                      +.+||+|||||++|+++|..|++      .|.  +|+|||+.+.
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~------~g~~~~V~lie~~~~   40 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRA------SGWEGNIRLVGDATV   40 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHH------TTCCSEEEEECSCCS
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHc------cCcCCCEEEEECCCC
Confidence            35799999999999999999999      777  8999998764

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.93  E-value=1.4e-09  Score=83.34  Aligned_cols=37  Identities=32%  Similarity=0.423  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ++|+||||||.+|+.+|..|++.     .+.+|+|||+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~-----~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTED-----PDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTS-----TTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhC-----cCCcEEEEecCCcc
Confidence            58999999999999999999972     58999999998644

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.93  E-value=3.3e-09  Score=83.37  Aligned_cols=41  Identities=39%  Similarity=0.661  Sum_probs=36.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      ...+||+|||||++|+++|+.|++      .|++|+|||+.+..+|.
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~------~G~~V~liE~~~~~GG~  429 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGV------RGYDVVLAEAGRDLGGR  429 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH------HTCEEEEECSSSSSCTH
T ss_pred             cccceEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCCE
Confidence            446799999999999999999999      79999999999877754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.92  E-value=4.1e-09  Score=79.50  Aligned_cols=38  Identities=32%  Similarity=0.500  Sum_probs=32.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      .||+|||||++|+++|+.|++.    ++|.+|+|||+.+..+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~----~~g~~V~lie~~~~~~   74 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRN----DENANVVTLEKGEIYS   74 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----CTTCEEEEECSSSCCS
T ss_pred             ceEEEECCCHHHHHHHHHHHhh----CcCCcEEEEECCCCCC
Confidence            5999999999999999999982    1389999999987543

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.91  E-value=5.5e-09  Score=81.88  Aligned_cols=39  Identities=36%  Similarity=0.671  Sum_probs=35.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG   65 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g   65 (182)
                      ..+||+|||||++|+++|..|++      .|++|+|||+.+..+|
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~------~g~~V~lie~~~~~gg  410 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAA------RGHQVTLFDAHSEIGG  410 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT------TTCEEEEEESSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh------CCCeEEEEeCCCCCCC
Confidence            35799999999999999999999      8999999999987765

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.90  E-value=2.1e-09  Score=80.08  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=38.9

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      |+.++||+|||+|++|+++|+.|++      .|.+|+++|+++..||..
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~------~g~~v~~~e~~~~~gg~~   45 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSV------NGKKVLHMDRNPYYGGES   45 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCTTS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCccccc
Confidence            4456899999999999999999999      899999999999888764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.90  E-value=3.3e-09  Score=77.85  Aligned_cols=38  Identities=24%  Similarity=0.399  Sum_probs=33.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      ++..|+|||||++|+++|..|.+      .+.+|+|||+.+..+
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~------~~~~itlie~~~~~~   45 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALG------KCDDITMINSEKYLP   45 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTT------TCSCEEEECSSSSCC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhC------CCCEEEEEECCCCCC
Confidence            45689999999999999999966      789999999987643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.90  E-value=5.5e-09  Score=78.23  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=32.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      +||+|||||++|+++|..|++.    ++|.+|+|||+.+..+
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~----~~g~~V~lie~~~~~~   38 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIAD----HPDADVTAYEMNDNIS   38 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----CTTCEEEEEESSSCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhh----CcCCcEEEEECCCCCC
Confidence            4899999999999999999982    1389999999987543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.89  E-value=6.9e-09  Score=84.24  Aligned_cols=41  Identities=41%  Similarity=0.691  Sum_probs=36.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+|||+.+..+|..
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~------~G~~V~lie~~~~~GG~~  167 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASR------SGARVMLLDERAEAGGTL  167 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSSGGG
T ss_pred             cCCCEEEECCCHHHHHHHHHHHh------CCCcEEEEeCCCCCCcee
Confidence            45799999999999999999999      899999999998777543

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.89  E-value=1.3e-09  Score=79.45  Aligned_cols=39  Identities=38%  Similarity=0.563  Sum_probs=36.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      +||+|||||++|+++|+.|++      .|.+|+|||+.+..||..
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~------~g~~v~v~E~~~~~GG~~   40 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKK------LNKKVLVIEKRNHIGGNA   40 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGG------GTCCEEEECSSSSSSGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHh------CCCcEEEEecCCCCCcce
Confidence            689999999999999999999      799999999998888764

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.88  E-value=2.3e-09  Score=80.89  Aligned_cols=42  Identities=33%  Similarity=0.485  Sum_probs=37.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~~~g~~~   68 (182)
                      ..+||+|||||++|+++|+.|++      .| .+|+|||+.+..||...
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~------~g~~~v~v~E~~~~~GG~~~   50 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTE------LGYKNWHLYECNDTPGGLSR   50 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHH------TTCCSEEEEESSSSSSGGGC
T ss_pred             cCCCEEEECcCHHHHHHHHHHHH------cCCCCEEEEeCCCCCCCeee
Confidence            45799999999999999999999      77 79999999998887654

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.88  E-value=2.3e-09  Score=78.63  Aligned_cols=40  Identities=25%  Similarity=0.517  Sum_probs=36.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      +.||+|||||++|+++|+.|++      .|.+|+|+|+.+..||..
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~------~g~~v~v~E~~~~~GG~~   42 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAE------KGHQVHIIDQRDHIGGNS   42 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT------TTCEEEEEESSSSSSGGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHH------CCCcEEEEEecCCcCCcc
Confidence            4689999999999999999999      899999999998888754

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.88  E-value=4e-09  Score=81.03  Aligned_cols=38  Identities=26%  Similarity=0.525  Sum_probs=32.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      .||+|||||++|+++|+.|++.    +.+.+|+|||+.+..+
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~----~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRL----SETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHH----CSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhh----CcCCCEEEEECCCCcc
Confidence            3799999999999999999982    2488999999987653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.87  E-value=1.7e-09  Score=80.97  Aligned_cols=44  Identities=41%  Similarity=0.651  Sum_probs=37.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV   72 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~   72 (182)
                      +||+|||||++|+++|+.|++      .|.+|+|||+.+..||.....++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~------~g~~V~lie~~~~~GG~~~~~g~   45 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQ------LGMKVGVVEKEKALGGTCLRVGC   45 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH------TTCCEEEEESSSSSSHHHHHHSH
T ss_pred             CCEEEECCChhHHHHHHHHHH------CCCeEEEEeCCCCCCCccceecc
Confidence            799999999999999999999      89999999999777765443333

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.85  E-value=2.3e-09  Score=81.13  Aligned_cols=45  Identities=36%  Similarity=0.422  Sum_probs=37.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI   73 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~   73 (182)
                      .+||+|||||++|+++|+.|++      .|.+|+|||+++ .||....-+++
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~------~G~~V~liE~~~-~GGtc~~~gci   52 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKK------HTDKVVLIEGGA-YGTTCARVGCM   52 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT------TCSCEEEEESSC-SSCHHHHHSHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHh------CCCcEEEEeCCC-CCCcccccChh
Confidence            5899999999999999999999      899999999975 66654333333

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.84  E-value=1.9e-08  Score=73.72  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=30.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~   61 (182)
                      ..+||+|||||++|+++|..|++      .|  .+|+++|+++
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~------~g~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRK------LDGETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHT------TCSSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHh------hCCCCCEEEEECCC
Confidence            35799999999999999999998      66  5799999874

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.84  E-value=2e-09  Score=80.82  Aligned_cols=40  Identities=30%  Similarity=0.552  Sum_probs=35.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+||+|||||++|+++|+.|++      .|.+|+|||+. ..+|..
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~------~g~~V~liE~~-~~GG~~   42 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAA------FGKRVALIESK-ALGGTC   42 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESS-CTTHHH
T ss_pred             ccCcEEEECCCHHHHHHHHHHHh------CCCcEEEEcCC-CCCCcC
Confidence            46899999999999999999999      89999999998 556543

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.84  E-value=9.7e-09  Score=76.77  Aligned_cols=37  Identities=22%  Similarity=0.345  Sum_probs=32.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      ||+|||||++|+++|..|++.    ++|.+|+|||+.+..+
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~----~~g~~V~lie~~~~~~   38 (447)
T 1nhp_A            2 KVIVLGSSHGGYEAVEELLNL----HPDAEIQWYEKGDFIS   38 (447)
T ss_dssp             EEEEECSSHHHHHHHHHHHHH----CTTSEEEEEESSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHh----CcCCeEEEEECCCccC
Confidence            799999999999999999982    1389999999987543

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.83  E-value=3.9e-09  Score=81.93  Aligned_cols=41  Identities=34%  Similarity=0.404  Sum_probs=36.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      +..+||+|||||++|+++|+.|++      +|++|+|||+.+..++.
T Consensus        44 ~~~~dvvIIG~G~aGl~aA~~l~~------~G~~V~liE~~~~~gg~   84 (623)
T 3pl8_A           44 DIKYDVVIVGSGPIGCTYARELVG------AGYKVAMFDIGEIDSGL   84 (623)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSCCCSSS
T ss_pred             cccCCEEEECCcHHHHHHHHHHHh------CCCcEEEEeccCCCCCc
Confidence            356899999999999999999999      89999999999877653

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.83  E-value=1.9e-09  Score=80.64  Aligned_cols=40  Identities=33%  Similarity=0.529  Sum_probs=35.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+||+|||||++|+++|+.|++      .|.+|+|||++ ..+|..
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~------~g~~V~liE~~-~~GG~~   42 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAM------YGQKCALIEAK-ELGGTC   42 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT------TTCCEEEEESS-CTTHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh------CCCeEEEEcCC-CCCCcc
Confidence            45899999999999999999999      89999999998 456543

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.83  E-value=3.9e-09  Score=79.88  Aligned_cols=41  Identities=37%  Similarity=0.555  Sum_probs=37.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ...||+|||||++|+++|+.|++      .|.+|+|||+.+..||..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~------~g~~v~vlE~~~~~gg~~   72 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAG------AGHQVTVLEASERPGGRV   72 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHH------HTCEEEEECSSSSSBTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh------CCCeEEEEECCCCCCCce
Confidence            35799999999999999999999      799999999999888864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.82  E-value=4e-08  Score=76.04  Aligned_cols=34  Identities=24%  Similarity=0.446  Sum_probs=31.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ..+||+|||||++|+++|..|++      .|.+|+|||+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~------~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAK------YGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHH------TTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHh------CCCeEEEEecc
Confidence            45899999999999999999999      89999999984

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.79  E-value=7.7e-09  Score=77.47  Aligned_cols=41  Identities=34%  Similarity=0.555  Sum_probs=36.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ...||+|||||++|+++|+.|++      .|++|+|||+.+..+|..
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~------~G~~V~v~e~~~~~GG~l  161 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRA------KGYEVHVYDRYDRMGGLL  161 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH------HTCCEEEECSSSSCSTHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCCCCCee
Confidence            45799999999999999999999      799999999998877654

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.78  E-value=3.7e-09  Score=78.15  Aligned_cols=36  Identities=31%  Similarity=0.496  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +|+|||||++|+++|..|++..   +.|.+|+|||+.+.
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~---~~g~~V~vie~~~~   38 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLV---GSKADVKVINKSRF   38 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHH---GGGSEEEEEESSSE
T ss_pred             eEEEECCCHHHHHHHHHHHhhC---CCCCeEEEEeCCCC
Confidence            7999999999999999998721   14789999999873

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.77  E-value=5.9e-09  Score=76.94  Aligned_cols=35  Identities=29%  Similarity=0.612  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~~~   63 (182)
                      .||+|||||++|+++|..|++      .|.  +|+|||+.+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~------~g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQ------AKYPGRIALINDEKHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH------TTCCSCEEEECCSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHh------hCcCCCEEEEeCCCCC
Confidence            479999999999999999999      777  89999998743

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.74  E-value=2e-08  Score=79.62  Aligned_cols=41  Identities=39%  Similarity=0.668  Sum_probs=36.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      ...+||+|||||++|+++|+.|++      .|++|+|||+.+..||.
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~------~g~~v~v~E~~~~~ggr  374 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHN------FGIKVTVLEAKDRIGGR  374 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHH------HTCEEEEECSSSSSCTT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH------CCCcEEEEecccceece
Confidence            345799999999999999999999      79999999998888773

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.71  E-value=2.3e-07  Score=67.97  Aligned_cols=92  Identities=18%  Similarity=0.192  Sum_probs=65.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      ..+++|||+|+.|+.+|..|++      .|.+|+++|+.+.....                                   
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~------~g~~Vtlv~~~~~~~~~-----------------------------------  183 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSS------GGYQLDVVAPCEQVMPG-----------------------------------  183 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSSSSTT-----------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHh------CCCeEEEEecCcchhhc-----------------------------------
Confidence            3579999999999999999999      89999999987643210                                   


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEe
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIA  176 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~  176 (182)
                                                .....+.+.+.+.+++.|++++++++|++++.++++..+.     ....|.||.
T Consensus       184 --------------------------~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~  237 (384)
T 2v3a_A          184 --------------------------LLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVS  237 (384)
T ss_dssp             --------------------------TSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEE
T ss_pred             --------------------------ccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEE
Confidence                                      0012456677777888899999999999997644322111     223466776


Q ss_pred             cCCC
Q psy2240         177 KDGS  180 (182)
Q Consensus       177 adG~  180 (182)
                      |.|.
T Consensus       238 a~G~  241 (384)
T 2v3a_A          238 AVGL  241 (384)
T ss_dssp             CSCE
T ss_pred             CcCC
Confidence            6664

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.71  E-value=1.6e-08  Score=76.08  Aligned_cols=41  Identities=29%  Similarity=0.593  Sum_probs=36.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~~g~~   67 (182)
                      ..+||+|||||++|+++|+.|++      .|. +|+|+|+.+..||..
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~------~g~~~v~~~e~~~~~gg~~   44 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSE------AGITDLLILEATDHIGGRM   44 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHH------TTCCCEEEECSSSSSBTTS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh------cCCCceEEEeCCCCCCCce
Confidence            35799999999999999999999      898 899999998888754

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.68  E-value=8.7e-08  Score=71.45  Aligned_cols=37  Identities=38%  Similarity=0.563  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .||+|||||++|+++|+.|++..   ..|.+|+|||+.+.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~---~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEAL---GSGHEVTLISANDY   41 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHH---GGGSEEEEECSSSE
T ss_pred             CcEEEECCcHHHHHHHHHHhccC---CCcCEEEEEeCCCC
Confidence            58999999999999999998722   14789999999863

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.66  E-value=3.3e-07  Score=68.84  Aligned_cols=71  Identities=17%  Similarity=0.226  Sum_probs=56.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      .+++|||||..|+.+|..|++      .|.+|+++|+.+.....                                    
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtlv~~~~~~l~~------------------------------------  207 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRR------LGAEVTLIEYMPEILPQ------------------------------------  207 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSSTT------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHH------CCCeEEEEEcCCccccc------------------------------------
Confidence            479999999999999999999      89999999987653210                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG  161 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~  161 (182)
                                                ....+.+.+.+.+++.|++++++++|++++.++
T Consensus       208 --------------------------~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~  240 (464)
T 2eq6_A          208 --------------------------GDPETAALLRRALEKEGIRVRTKTKAVGYEKKK  240 (464)
T ss_dssp             --------------------------SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEET
T ss_pred             --------------------------cCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeC
Confidence                                      001455667777788899999999999987643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.65  E-value=4.2e-07  Score=68.06  Aligned_cols=90  Identities=17%  Similarity=0.245  Sum_probs=64.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      .+++|||||++|+.+|..|++      .|.+|+++|+.+.....      .                             
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~------~g~~V~lv~~~~~~l~~------~-----------------------------  206 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHR------LGAEVIVLEYMDRILPT------M-----------------------------  206 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSCTT------S-----------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCEEEEEecCCccccc------c-----------------------------
Confidence            479999999999999999999      89999999987643100      0                             


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEec
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIAK  177 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~a  177 (182)
                                                 ...+.+.+.+.+++.|++++.+++|++++.++++..+.     ....|.||.|
T Consensus       207 ---------------------------~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A  259 (455)
T 2yqu_A          207 ---------------------------DLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVA  259 (455)
T ss_dssp             ---------------------------CHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEEC
T ss_pred             ---------------------------CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEEC
Confidence                                       01345556677777899999999999998644322111     2234667666


Q ss_pred             CCC
Q psy2240         178 DGS  180 (182)
Q Consensus       178 dG~  180 (182)
                      .|.
T Consensus       260 ~G~  262 (455)
T 2yqu_A          260 VGR  262 (455)
T ss_dssp             SCE
T ss_pred             cCC
Confidence            664

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.64  E-value=2.5e-08  Score=75.43  Aligned_cols=33  Identities=24%  Similarity=0.562  Sum_probs=29.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEe
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE   58 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE   58 (182)
                      ..+||+|||||++|+++|+.|++.     .|.+|+|||
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~-----~G~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASL-----HKKRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHH-----HCCCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHH-----cCCEEEEEe
Confidence            358999999999999999999872     378999999

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.63  E-value=4.6e-08  Score=76.55  Aligned_cols=41  Identities=37%  Similarity=0.638  Sum_probs=37.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      ....||+|||+|++|+++|+.|++      .|++|+|+|+.+..||.
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~------~g~~v~~~e~~~~~gg~  145 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQS------FGMDVTLLEARDRVGGR  145 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHH------TTCEEEEECSSSSSBTT
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCCCc
Confidence            345799999999999999999999      89999999999888774

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.63  E-value=5.8e-08  Score=76.76  Aligned_cols=42  Identities=38%  Similarity=0.632  Sum_probs=37.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ..+||+|||||++|+++|+.|++      .|++|+|||+.+..+|...
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~------~G~~Vtlie~~~~~GG~~~  429 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLME------SGYTVHLTDTAEKIGGHLN  429 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSTTTTHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCCcCCeee
Confidence            35799999999999999999999      8999999999988877653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.63  E-value=6.5e-07  Score=66.93  Aligned_cols=90  Identities=24%  Similarity=0.276  Sum_probs=65.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      ..+++|||||++|+.+|..|++      .|.+|+++|+.+.+...                                   
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~------~g~~Vtlv~~~~~~l~~-----------------------------------  187 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAK------AGKKVTVIDILDRPLGV-----------------------------------  187 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSSTTTT-----------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHH------CCCeEEEEecCcccccc-----------------------------------
Confidence            4689999999999999999999      89999999988643210                                   


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------EEeCCEEE
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------IATGDVGI  175 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------v~~~~~vi  175 (182)
                                  .+              ...+.+.+.+.+++.|++++++++|++++.+  +.+..      ....|.||
T Consensus       188 ------------~~--------------~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~~v~~~~~~i~~d~vi  239 (447)
T 1nhp_A          188 ------------YL--------------DKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVTDKNAYDADLVV  239 (447)
T ss_dssp             ------------TC--------------CHHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEESSCEEECSEEE
T ss_pred             ------------cC--------------CHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEEEEEECCCEEECCEEE
Confidence                        00              0245667777888889999999999999753  32211      23456777


Q ss_pred             ecCCC
Q psy2240         176 AKDGS  180 (182)
Q Consensus       176 ~adG~  180 (182)
                      .|.|.
T Consensus       240 ~a~G~  244 (447)
T 1nhp_A          240 VAVGV  244 (447)
T ss_dssp             ECSCE
T ss_pred             ECcCC
Confidence            77664

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.63  E-value=3e-08  Score=75.95  Aligned_cols=37  Identities=41%  Similarity=0.596  Sum_probs=33.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +.++|+||||+|++|+++|..|++      .|.+|+|||+.+.
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~------~g~~VlvlE~g~~   41 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSE------AGKKVLLLERGGP   41 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHh------CCCeEEEEeCCCC
Confidence            356899999999999999999999      8999999999864

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.62  E-value=2.2e-08  Score=76.31  Aligned_cols=37  Identities=43%  Similarity=0.619  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ++||+||||+|.+|+.+|..|++.     .+.+|+|||+++.
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~-----~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSED-----PDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTS-----TTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhC-----CCCeEEEEcCCCC
Confidence            479999999999999999999962     4789999999964

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.61  E-value=6.5e-08  Score=77.38  Aligned_cols=40  Identities=38%  Similarity=0.644  Sum_probs=36.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      ...+|+|||+|++|+++|+.|++      .|++|+|||+.+.+||.
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~------~g~~v~v~E~~~~~GG~  316 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQS------FGMDVTLLEARDRVGGR  316 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSCTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH------CCCcEEEEEecCcCCCc
Confidence            45699999999999999999999      89999999999888874

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.59  E-value=9.2e-07  Score=66.17  Aligned_cols=90  Identities=22%  Similarity=0.150  Sum_probs=64.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+.+|..|++      .|.+|+++|+.+.....      +         +                   
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtlv~~~~~~l~~------~---------~-------------------  207 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVING------LGAKTHLFEMFDAPLPS------F---------D-------------------  207 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSSTT------S---------C-------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHh------cCCEEEEEEeCCchhhh------h---------h-------------------
Confidence            479999999999999999999      89999999987542100      0         0                   


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE-E-----EEeCCEEEe
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK-G-----IATGDVGIA  176 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~-~-----v~~~~~vi~  176 (182)
                                                  ..+.+.+.+.+++.|++++++++|++++.++++.+. .     ....|.||.
T Consensus       208 ----------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~  259 (450)
T 1ges_A          208 ----------------------------PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIW  259 (450)
T ss_dssp             ----------------------------HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEE
T ss_pred             ----------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEE
Confidence                                        024455666777789999999999999864444221 1     233466777


Q ss_pred             cCCC
Q psy2240         177 KDGS  180 (182)
Q Consensus       177 adG~  180 (182)
                      |.|.
T Consensus       260 a~G~  263 (450)
T 1ges_A          260 AIGR  263 (450)
T ss_dssp             CSCE
T ss_pred             CCCC
Confidence            7664

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.57  E-value=1e-06  Score=66.37  Aligned_cols=69  Identities=20%  Similarity=0.284  Sum_probs=56.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      .+++|||||..|+-+|..|++      .|.+|+++|+.+......               +                   
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtlv~~~~~~l~~~---------------~-------------------  223 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSR------LGSKVTVVEFQPQIGASM---------------D-------------------  223 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSSSSS---------------C-------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHH------cCCEEEEEEeCCcccccc---------------C-------------------
Confidence            479999999999999999999      899999999986543100               0                   


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY  159 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~  159 (182)
                                                  ..+.+.+.+.+++.|++++++++|+++..
T Consensus       224 ----------------------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~  252 (478)
T 1v59_A          224 ----------------------------GEVAKATQKFLKKQGLDFKLSTKVISAKR  252 (478)
T ss_dssp             ----------------------------HHHHHHHHHHHHHTTCEEECSEEEEEEEE
T ss_pred             ----------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence                                        24566777777888999999999999975

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.54  E-value=1.1e-06  Score=65.81  Aligned_cols=90  Identities=20%  Similarity=0.252  Sum_probs=64.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      .+++|||||..|+-+|..|++      .|.+|+++|+.+....                                     
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtlv~~~~~~l~-------------------------------------  207 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYAN------FGTKVTILEGAGEILS-------------------------------------  207 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSSSST-------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCcEEEEEcCCcccc-------------------------------------
Confidence            579999999999999999999      8999999998764310                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE--------EEeCCEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--------IATGDVG  174 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~--------v~~~~~v  174 (182)
                                 .+              ...+.+.+.+.+++.|++++.+++|++++.++++..+.        ....|.|
T Consensus       208 -----------~~--------------~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~v  262 (455)
T 1ebd_A          208 -----------GF--------------EKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYV  262 (455)
T ss_dssp             -----------TS--------------CHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEE
T ss_pred             -----------cc--------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEE
Confidence                       00              01355566777788899999999999997644332221        1234667


Q ss_pred             EecCCC
Q psy2240         175 IAKDGS  180 (182)
Q Consensus       175 i~adG~  180 (182)
                      |.|.|.
T Consensus       263 v~a~G~  268 (455)
T 1ebd_A          263 LVTVGR  268 (455)
T ss_dssp             EECSCE
T ss_pred             EECcCC
Confidence            766664

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.53  E-value=2.9e-06  Score=62.81  Aligned_cols=91  Identities=23%  Similarity=0.333  Sum_probs=67.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      ...++|||+|..|+-+|..|++      .|.+|+++|+.+....                                    
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~------~g~~Vtvv~~~~~~l~------------------------------------  189 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTK------FGVNVTLLEALPRVLA------------------------------------  189 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSSTTT------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHh------cCCeEEEEecCCchhh------------------------------------
Confidence            3579999999999999999999      8999999998764310                                    


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEE-------eCCEE
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIA-------TGDVG  174 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~-------~~~~v  174 (182)
                                 ..              ....+.+.+.+.+++.|++++++++|++++. +++.+.++.       ..|.|
T Consensus       190 -----------~~--------------~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~v~l~dG~~i~aD~V  243 (415)
T 3lxd_A          190 -----------RV--------------AGEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVRMQDGSVIPADIV  243 (415)
T ss_dssp             -----------TT--------------SCHHHHHHHHHHHHHTTCEEEETCCEEEEEE-SSSBEEEEEESSSCEEECSEE
T ss_pred             -----------hh--------------cCHHHHHHHHHHHHhCCCEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEE
Confidence                       00              0024666777788889999999999999986 444544433       35777


Q ss_pred             EecCCC
Q psy2240         175 IAKDGS  180 (182)
Q Consensus       175 i~adG~  180 (182)
                      |.|.|.
T Consensus       244 v~a~G~  249 (415)
T 3lxd_A          244 IVGIGI  249 (415)
T ss_dssp             EECSCC
T ss_pred             EECCCC
Confidence            777664

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.51  E-value=1.1e-07  Score=71.99  Aligned_cols=41  Identities=24%  Similarity=0.408  Sum_probs=34.2

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ++..+||+|||||++|+++|..|.+.    +.|.+|+|||+.+..
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~----~~g~~V~lie~~~~~   48 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRAR----DPGARVLIVSEDPEL   48 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHH----STTCEEEEEESSSSC
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhc----CCCCeEEEEeCCCCC
Confidence            34568999999999999999999872    248999999998654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.51  E-value=1e-07  Score=70.43  Aligned_cols=37  Identities=30%  Similarity=0.358  Sum_probs=32.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAAEV   63 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~~~   63 (182)
                      ..+||+|||||++|+++|..|++      .|.  +|+|||+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~------~g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQ------AGYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHH------HTCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHc------cCCCCeEEEEECCCCC
Confidence            45799999999999999999999      566  59999998754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.50  E-value=3.3e-06  Score=62.31  Aligned_cols=90  Identities=24%  Similarity=0.377  Sum_probs=66.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||+|..|+-+|..|.+      .|.+|+++|+.+.....                                    
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtvv~~~~~~~~~------------------------------------  180 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARA------KGLEVDVVELAPRVMAR------------------------------------  180 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSTTTT------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHh------CCCEEEEEeCCCcchhh------------------------------------
Confidence            479999999999999999999      89999999987532100                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE-------EeCCEEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI-------ATGDVGI  175 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v-------~~~~~vi  175 (182)
                                              . ....+.+.+.+.+++.|++++++++|++++.+ ++.+.++       ...|.||
T Consensus       181 ------------------------~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~dG~~i~aD~Vv  234 (404)
T 3fg2_P          181 ------------------------V-VTPEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSDGNTLPCDLVV  234 (404)
T ss_dssp             ------------------------T-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSEEE
T ss_pred             ------------------------c-cCHHHHHHHHHHHHhCCcEEEECCEEEEEEec-CCcEEEEEeCCCCEEEcCEEE
Confidence                                    0 01246667778888899999999999999763 3444433       3357777


Q ss_pred             ecCCC
Q psy2240         176 AKDGS  180 (182)
Q Consensus       176 ~adG~  180 (182)
                      .|.|.
T Consensus       235 ~a~G~  239 (404)
T 3fg2_P          235 VGVGV  239 (404)
T ss_dssp             ECCCE
T ss_pred             ECcCC
Confidence            77664

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.49  E-value=2.4e-06  Score=64.36  Aligned_cols=74  Identities=20%  Similarity=0.249  Sum_probs=57.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+......                                   
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~~l~~~-----------------------------------  217 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQR------LGADVTAVEFLGHVGGVG-----------------------------------  217 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSSCSS-----------------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHH------cCCEEEEEeccCccCCcc-----------------------------------
Confidence            479999999999999999999      899999999876432100                                   


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG  163 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g  163 (182)
                               +                + ..+.+.+.+.+++.|++++++++|++++.++++
T Consensus       218 ---------~----------------~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~  252 (474)
T 1zmd_A          218 ---------I----------------D-MEISKNFQRILQKQGFKFKLNTKVTGATKKSDG  252 (474)
T ss_dssp             ---------C----------------C-HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTS
T ss_pred             ---------c----------------C-HHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCc
Confidence                     0                0 135556777778889999999999999865444

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.47  E-value=1.7e-07  Score=76.62  Aligned_cols=40  Identities=30%  Similarity=0.495  Sum_probs=35.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCCCCc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEVGGH   66 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~~g~   66 (182)
                      ..+||+|||||++|+++|..|++      .|+ +|+|||+.+..+|.
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~------~G~~~Vtv~E~~~~~GG~  226 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLAR------LGYSDITIFEKQEYVGGL  226 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHH------TTCCCEEEEESSSSCSTH
T ss_pred             CCCEEEEECccHHHHHHHHHHHh------cCCCcEEEEeCCCCCCcc
Confidence            35799999999999999999999      898 79999999877764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.46  E-value=1.9e-07  Score=69.98  Aligned_cols=45  Identities=24%  Similarity=0.315  Sum_probs=35.3

Q ss_pred             cccEEEECCChHHHHHHHHHHH-hhhhcCCCceEEEEecCCCCCCc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQ-LAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~-~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      .+||+|||||++|+++|..|++ ....+..|.+|+|||+.+.++|.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~   48 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL   48 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCc
Confidence            4699999999999999999987 42100017999999999877654

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.45  E-value=9.2e-08  Score=73.08  Aligned_cols=37  Identities=38%  Similarity=0.551  Sum_probs=33.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ..++|+||||+|.+|+.+|..|++       |.+|+|||+++..
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse-------g~~VlvLEaG~~~   60 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE-------KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT-------TSCEEEECSSBCG
T ss_pred             cCcccEEEECccHHHHHHHHHHhc-------CCcEEEEecCCCc
Confidence            356899999999999999999986       6899999999754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.44  E-value=3.6e-06  Score=63.50  Aligned_cols=89  Identities=22%  Similarity=0.349  Sum_probs=65.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      ..+++|||||++|+.+|..|++      .|.+|+++|+.+.....                                   
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~------~g~~Vtlv~~~~~~l~~-----------------------------------  224 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVE------LGKKVRMIERNDHIGTI-----------------------------------  224 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHH------TTCEEEEECCGGGTTSS-----------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHh------cCCeEEEEEeCCchhhc-----------------------------------
Confidence            3579999999999999999999      89999999987543200                                   


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------EEeCCEEE
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------IATGDVGI  175 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------v~~~~~vi  175 (182)
                                +                 ...+.+.+.+.+++.|++++++++|+++..+  +.+..      ....|.||
T Consensus       225 ----------~-----------------~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~v~~v~~~~~~i~~D~vi  275 (480)
T 3cgb_A          225 ----------Y-----------------DGDMAEYIYKEADKHHIEILTNENVKAFKGN--ERVEAVETDKGTYKADLVL  275 (480)
T ss_dssp             ----------S-----------------CHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SBEEEEEETTEEEECSEEE
T ss_pred             ----------C-----------------CHHHHHHHHHHHHHcCcEEEcCCEEEEEEcC--CcEEEEEECCCEEEcCEEE
Confidence                      0                 0135566777788889999999999999753  33322      23456777


Q ss_pred             ecCCC
Q psy2240         176 AKDGS  180 (182)
Q Consensus       176 ~adG~  180 (182)
                      .|.|.
T Consensus       276 ~a~G~  280 (480)
T 3cgb_A          276 VSVGV  280 (480)
T ss_dssp             ECSCE
T ss_pred             ECcCC
Confidence            66664

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=98.42  E-value=3.7e-07  Score=70.69  Aligned_cols=45  Identities=20%  Similarity=0.273  Sum_probs=40.2

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      .++++||++|||+|..|+.+|..|++      .|.+|++|||++..||...
T Consensus         4 ~~~~~~D~~i~GtGl~~~~~a~~~~~------~g~~vl~id~~~~~gg~~~   48 (650)
T 1vg0_A            4 NLPSDFDVIVIGTGLPESIIAAACSR------SGQRVLHVDSRSYYGGNWA   48 (650)
T ss_dssp             CCCSBCSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCGGGC
T ss_pred             cCCCcCCEEEECCcHHHHHHHHHHHh------CCCEEEEEcCCCcccCccc
Confidence            34557999999999999999999999      8999999999999887643

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.42  E-value=3e-06  Score=63.67  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||||..|+.+|..|++      .|.+|+++|+.+.
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~------~G~~Vtlv~~~~~  200 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRS------FGSEVTVVALEDR  200 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh------cCCEEEEEEcCCc
Confidence            479999999999999999999      8999999998754

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.42  E-value=5.2e-06  Score=61.36  Aligned_cols=89  Identities=22%  Similarity=0.312  Sum_probs=64.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++|+.+.....                                    
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtvv~~~~~~l~~------------------------------------  181 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARK------LGLSVTILEAGDELLVR------------------------------------  181 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSSHH------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHh------CCCeEEEEecCCccchh------------------------------------
Confidence            479999999999999999999      89999999987643200                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-------EEeCCEEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-------IATGDVGI  175 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-------v~~~~~vi  175 (182)
                      .+                         ...+.+.+.+.+++.|++++++++|++++.++  .+.+       ....|.||
T Consensus       182 ~~-------------------------~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~~~v~~~dg~~i~aD~Vv  234 (410)
T 3ef6_A          182 VL-------------------------GRRIGAWLRGLLTELGVQVELGTGVVGFSGEG--QLEQVMASDGRSFVADSAL  234 (410)
T ss_dssp             HH-------------------------CHHHHHHHHHHHHHHTCEEECSCCEEEEECSS--SCCEEEETTSCEEECSEEE
T ss_pred             hc-------------------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEeccC--cEEEEEECCCCEEEcCEEE
Confidence            00                         01455667777788899999999999997532  2222       23457777


Q ss_pred             ecCCC
Q psy2240         176 AKDGS  180 (182)
Q Consensus       176 ~adG~  180 (182)
                      .|.|.
T Consensus       235 ~a~G~  239 (410)
T 3ef6_A          235 ICVGA  239 (410)
T ss_dssp             ECSCE
T ss_pred             EeeCC
Confidence            77664

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=98.42  E-value=2.9e-07  Score=69.89  Aligned_cols=37  Identities=30%  Similarity=0.475  Sum_probs=33.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|++|||+|++|+.+|..|++      .|.+|+|||+...
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~------~~~~v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQ------AGIPTQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH------CCCcEEEEECCCC
Confidence            457899999999999999999999      8999999999863

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.41  E-value=5.8e-06  Score=62.15  Aligned_cols=90  Identities=17%  Similarity=0.165  Sum_probs=64.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+.....      +                             
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~~l~~------~-----------------------------  213 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWAR------LGAEVTVVEFAPRCAPT------L-----------------------------  213 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSSTT------S-----------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHH------hCCEEEEEecCCccccc------C-----------------------------
Confidence            479999999999999999999      89999999987643210      0                             


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHH-HHcCcEEecCCccceeEEcCCCcEEE---------EEeCC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQA-EAMGVEIYPGIPASEVLYHGDGSVKG---------IATGD  172 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~gv~i~~~~~v~~i~~~~~g~~~~---------v~~~~  172 (182)
                                                 ...+.+.+.+.+ ++.|++++.+++|++++.++++..+.         ....|
T Consensus       214 ---------------------------d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D  266 (468)
T 2qae_A          214 ---------------------------DEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCE  266 (468)
T ss_dssp             ---------------------------CHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEES
T ss_pred             ---------------------------CHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECC
Confidence                                       013456677777 78899999999999998644332211         22346


Q ss_pred             EEEecCCC
Q psy2240         173 VGIAKDGS  180 (182)
Q Consensus       173 ~vi~adG~  180 (182)
                      .||.|.|.
T Consensus       267 ~vv~a~G~  274 (468)
T 2qae_A          267 ALLVSVGR  274 (468)
T ss_dssp             EEEECSCE
T ss_pred             EEEECCCc
Confidence            66666663

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.41  E-value=8.2e-06  Score=60.73  Aligned_cols=91  Identities=24%  Similarity=0.331  Sum_probs=64.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+.+...                                    
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~------~G~~Vtlv~~~~~~l~~------------------------------------  187 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIK------ANMHVTLLDTAARVLER------------------------------------  187 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSTTTT------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHh------CCCEEEEEEeCCccccc------------------------------------
Confidence            479999999999999999999      89999999986542100                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEc-CCCcEEEE-------EeCCEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYH-GDGSVKGI-------ATGDVG  174 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~-~~g~~~~v-------~~~~~v  174 (182)
                                              .+ ...+.+.+.+.+++.|++++++++|+++..+ +++.+..+       ...|.|
T Consensus       188 ------------------------~~-~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~V  242 (431)
T 1q1r_A          188 ------------------------VT-APPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLV  242 (431)
T ss_dssp             ------------------------TS-CHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEE
T ss_pred             ------------------------hh-hHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEE
Confidence                                    00 0135556677777889999999999999752 23433332       345777


Q ss_pred             EecCCC
Q psy2240         175 IAKDGS  180 (182)
Q Consensus       175 i~adG~  180 (182)
                      |.|.|.
T Consensus       243 v~a~G~  248 (431)
T 1q1r_A          243 IAGIGL  248 (431)
T ss_dssp             EECCCE
T ss_pred             EECCCC
Confidence            777663

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.41  E-value=2.7e-07  Score=69.26  Aligned_cols=39  Identities=31%  Similarity=0.420  Sum_probs=34.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCCCCCCc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAAEVGGH   66 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~~~~g~   66 (182)
                      .+||+|||||++|+.+|..|++      .|  .+|+|||+.+.++|.
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~------~g~~~~V~vie~~~~~gg~   46 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLK------HHSRAHVDIYEKQLVPFGL   46 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH------HCSSCEEEEECSSSSSCTH
T ss_pred             CceEEEECcCHHHHHHHHHHHh------cCCCCCEEEEeCCCcCCce
Confidence            4689999999999999999998      56  999999999877653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.40  E-value=2.2e-07  Score=67.69  Aligned_cols=35  Identities=37%  Similarity=0.560  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      -.|++|||||++|+++|..|++      .| +|+|||+.+..
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~------~g-~V~lie~~~~~   42 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQ------TY-EVTVIDKEPVP   42 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTT------TS-EEEEECSSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhh------cC-CEEEEECCCCC
Confidence            3699999999999999999998      78 99999998753

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.40  E-value=3.7e-07  Score=67.49  Aligned_cols=36  Identities=22%  Similarity=0.503  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCce--EEEEecCCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELK--VCLVEKAAEVG   64 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~--v~vlE~~~~~~   64 (182)
                      .+|+|||||++|+++|..|++      .|.+  |+|||+.+...
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~------~g~~~~V~li~~~~~~~   40 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRA------EGFEGRISLIGDEPHLP   40 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCCSEEEEEECSSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHc------cCcCCeEEEEECCCCCC
Confidence            389999999999999999999      6766  99999987644

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.39  E-value=3.7e-07  Score=69.28  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=33.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .++|++|||+|++|+++|+.|++      .|.+|+|||+.+.
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~------~~~~v~~~e~~~~   39 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGE------AGVQTLMLEMGQL   39 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh------CCCcEEEEeCCCC
Confidence            46899999999999999999999      8999999999874

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.37  E-value=3e-06  Score=63.57  Aligned_cols=35  Identities=29%  Similarity=0.537  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .+++|||||.+|+.+|..|++      .|.+|+++|+.+..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRK------LGAQVSVVEARERI  206 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------HTCEEEEECSSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHH------CCCeEEEEEcCCcc
Confidence            479999999999999999999      78999999988643

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.37  E-value=9.5e-06  Score=61.27  Aligned_cols=90  Identities=20%  Similarity=0.194  Sum_probs=64.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      .+++|||+|..|+-+|..|++      .|.+|+++++.+......               +                   
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~------~g~~Vtli~~~~~~l~~~---------------~-------------------  231 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHG------LGVKTTLLHRGDLILRNF---------------D-------------------  231 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSSTTS---------------C-------------------
T ss_pred             CcEEEECcCHHHHHHHHHHHH------cCCeEEEEECCCcccccc---------------C-------------------
Confidence            479999999999999999999      899999999876431000               0                   


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEec
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIAK  177 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~a  177 (182)
                                                  ..+.+.+.+.+++.|++++.+++|++++.++++..+.     ....|.||.|
T Consensus       232 ----------------------------~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A  283 (484)
T 3o0h_A          232 ----------------------------YDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLA  283 (484)
T ss_dssp             ----------------------------HHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEEC
T ss_pred             ----------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEe
Confidence                                        1345567777778899999999999998744432221     2234667777


Q ss_pred             CCC
Q psy2240         178 DGS  180 (182)
Q Consensus       178 dG~  180 (182)
                      .|.
T Consensus       284 ~G~  286 (484)
T 3o0h_A          284 TGR  286 (484)
T ss_dssp             CCE
T ss_pred             eCC
Confidence            664

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.37  E-value=2.6e-06  Score=64.04  Aligned_cols=90  Identities=22%  Similarity=0.255  Sum_probs=63.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+.....                                    
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtli~~~~~~l~~------------------------------------  215 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGR------IGSEVTVVEFASEIVPT------------------------------------  215 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHH------HTCEEEEECSSSSSSTT------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCcEEEEEcCCccccc------------------------------------
Confidence            479999999999999999999      78999999988643210                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----------EEeCC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----------IATGD  172 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----------v~~~~  172 (182)
                               +                 ...+.+.+.+.+++.|++++.+++|+++..++++..+.          ....|
T Consensus       216 ---------~-----------------~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D  269 (470)
T 1dxl_A          216 ---------M-----------------DAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEAD  269 (470)
T ss_dssp             ---------S-----------------CHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEES
T ss_pred             ---------c-----------------cHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECC
Confidence                     0                 01345566777788899999999999997543332221          12346


Q ss_pred             EEEecCCC
Q psy2240         173 VGIAKDGS  180 (182)
Q Consensus       173 ~vi~adG~  180 (182)
                      .||.|.|.
T Consensus       270 ~vv~a~G~  277 (470)
T 1dxl_A          270 VVLVSAGR  277 (470)
T ss_dssp             EEECCCCE
T ss_pred             EEEECCCC
Confidence            67766663

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.36  E-value=6.9e-06  Score=62.14  Aligned_cols=90  Identities=22%  Similarity=0.151  Sum_probs=64.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCC---CceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGK---ELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~---g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      ..++|||||..|+-+|..|++      .   |.+|+++|+.+.....                             +   
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~------~~~~g~~Vtlv~~~~~~l~~-----------------------------~---  229 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNA------YKARGGQVDLAYRGDMILRG-----------------------------F---  229 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHH------HSCTTCEEEEEESSSSSSTT-----------------------------S---
T ss_pred             CeEEEECCCHHHHHHHHHHHh------hccCcCeEEEEEcCCCcccc-----------------------------c---
Confidence            479999999999999999998      6   8999999987643200                             0   


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE-E-----EEeCCE
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK-G-----IATGDV  173 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~-~-----v~~~~~  173 (182)
                                                    ...+.+.+.+.+++.|++|+++++|++++.++++.+. .     ....|.
T Consensus       230 ------------------------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~  279 (490)
T 1fec_A          230 ------------------------------DSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDV  279 (490)
T ss_dssp             ------------------------------CHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESE
T ss_pred             ------------------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCE
Confidence                                          0135566777778889999999999999864433221 1     223456


Q ss_pred             EEecCCC
Q psy2240         174 GIAKDGS  180 (182)
Q Consensus       174 vi~adG~  180 (182)
                      ||.|.|.
T Consensus       280 vv~a~G~  286 (490)
T 1fec_A          280 VMLAIGR  286 (490)
T ss_dssp             EEECSCE
T ss_pred             EEEccCC
Confidence            6666553

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.36  E-value=8.2e-06  Score=61.06  Aligned_cols=90  Identities=20%  Similarity=0.216  Sum_probs=64.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++|+.+......                                   
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~~l~~~-----------------------------------  188 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSN------QNYNVNLIDGHERVLYKY-----------------------------------  188 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHT------TTCEEEEEESSSSTTTTT-----------------------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHh------cCCEEEEEEcCCchhhhh-----------------------------------
Confidence            479999999999999999998      799999999876432100                                   


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE------EeCCEEEe
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI------ATGDVGIA  176 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------~~~~~vi~  176 (182)
                               +                + ..+.+.+.+.+++.|++++.+++|++++. +++.+..+      ...|.||.
T Consensus       189 ---------~----------------~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~v~~v~~~g~~i~~D~vv~  241 (452)
T 2cdu_A          189 ---------F----------------D-KEFTDILAKDYEAHGVNLVLGSKVAAFEE-VDDEIITKTLDGKEIKSDIAIL  241 (452)
T ss_dssp             ---------S----------------C-HHHHHHHHHHHHHTTCEEEESSCEEEEEE-ETTEEEEEETTSCEEEESEEEE
T ss_pred             ---------h----------------h-hhHHHHHHHHHHHCCCEEEcCCeeEEEEc-CCCeEEEEEeCCCEEECCEEEE
Confidence                     0                0 13556667777888999999999999975 23433322      23466666


Q ss_pred             cCCC
Q psy2240         177 KDGS  180 (182)
Q Consensus       177 adG~  180 (182)
                      |.|.
T Consensus       242 a~G~  245 (452)
T 2cdu_A          242 CIGF  245 (452)
T ss_dssp             CCCE
T ss_pred             CcCC
Confidence            6653

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=98.34  E-value=2.3e-07  Score=72.72  Aligned_cols=36  Identities=31%  Similarity=0.470  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCC--------ceEEEEecCC-CC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKE--------LKVCLVEKAA-EV   63 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--------~~v~vlE~~~-~~   63 (182)
                      ..+|+|||||++||++|+.|++      .|        ++|+|+|+.+ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~------~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGR------LAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH------HHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHH------cCcccccCCCceEEEEeccCccc
Confidence            3689999999999999999998      66        9999999998 77

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.34  E-value=9.7e-06  Score=60.93  Aligned_cols=89  Identities=16%  Similarity=0.134  Sum_probs=63.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+....       +         +                   
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~~l~-------~---------~-------------------  215 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFAR------LGSKVTVLARNTLFFR-------E---------D-------------------  215 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSCTTTT-------S---------C-------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHH------cCCEEEEEEECCccCC-------C---------C-------------------
Confidence            479999999999999999999      8999999998753210       0         0                   


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE----EEEeCCEEEecC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK----GIATGDVGIAKD  178 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~----~v~~~~~vi~ad  178 (182)
                                                  ..+.+.+.+.+++.|++++.+++|+++..+++...+    +....|.||.|.
T Consensus       216 ----------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~~~i~aD~Vv~a~  267 (467)
T 1zk7_A          216 ----------------------------PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHGELRADKLLVAT  267 (467)
T ss_dssp             ----------------------------HHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEETTEEEEESEEEECS
T ss_pred             ----------------------------HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEECCcEEEcCEEEECC
Confidence                                        135566777778889999999999999763322111    123346666665


Q ss_pred             CC
Q psy2240         179 GS  180 (182)
Q Consensus       179 G~  180 (182)
                      |.
T Consensus       268 G~  269 (467)
T 1zk7_A          268 GR  269 (467)
T ss_dssp             CE
T ss_pred             CC
Confidence            53

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.34  E-value=7.1e-06  Score=62.07  Aligned_cols=89  Identities=21%  Similarity=0.239  Sum_probs=64.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+.....                                    
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~------~g~~Vtlv~~~~~~l~~------------------------------------  232 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQR------KGKEVVLIDVVDTCLAG------------------------------------  232 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSSTTTT------------------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHH------CCCeEEEEEcccchhhh------------------------------------
Confidence            479999999999999999999      89999999987643210                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------EEeCCEEEe
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------IATGDVGIA  176 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------v~~~~~vi~  176 (182)
                              .+                + ..+.+.+.+.+++.|++++.+++|+++.. + +.+..      ....|.||.
T Consensus       233 --------~~----------------~-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~-~~v~~v~~~g~~i~~D~Vi~  285 (490)
T 2bc0_A          233 --------YY----------------D-RDLTDLMAKNMEEHGIQLAFGETVKEVAG-N-GKVEKIITDKNEYDVDMVIL  285 (490)
T ss_dssp             --------TS----------------C-HHHHHHHHHHHHTTTCEEEETCCEEEEEC-S-SSCCEEEESSCEEECSEEEE
T ss_pred             --------HH----------------H-HHHHHHHHHHHHhCCeEEEeCCEEEEEEc-C-CcEEEEEECCcEEECCEEEE
Confidence                    00                0 13556667777888999999999999974 2 32211      234567776


Q ss_pred             cCCC
Q psy2240         177 KDGS  180 (182)
Q Consensus       177 adG~  180 (182)
                      |.|.
T Consensus       286 a~G~  289 (490)
T 2bc0_A          286 AVGF  289 (490)
T ss_dssp             CCCE
T ss_pred             CCCC
Confidence            6664

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.33  E-value=1.1e-05  Score=61.15  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+..
T Consensus       175 k~vvViGgG~ig~E~A~~l~~------~g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSR------LGVIVKVFGRSGSV  209 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHH------TTCEEEEECCTTCC
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEEECCcc
Confidence            479999999999999999999      89999999988653

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.33  E-value=1.3e-05  Score=61.19  Aligned_cols=90  Identities=16%  Similarity=0.225  Sum_probs=65.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+.....                                    
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~------~G~~Vtlv~~~~~~l~~------------------------------------  252 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNA------TGRRTVMLVRTEPLKLI------------------------------------  252 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSCTTTTC------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEEecCccccc------------------------------------
Confidence            579999999999999999999      89999999987642100                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcE----E----E--EEeCC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV----K----G--IATGD  172 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~----~----~--v~~~~  172 (182)
                               +                 ...+.+.+.+.+++.|++++++++|+++..++++.+    +    +  ....|
T Consensus       253 ---------~-----------------~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD  306 (523)
T 1mo9_A          253 ---------K-----------------DNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETD  306 (523)
T ss_dssp             ---------C-----------------SHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECS
T ss_pred             ---------c-----------------cHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcC
Confidence                     0                 013456677778888999999999999986445532    1    1  23456


Q ss_pred             EEEecCCC
Q psy2240         173 VGIAKDGS  180 (182)
Q Consensus       173 ~vi~adG~  180 (182)
                      .||.|.|.
T Consensus       307 ~Vv~A~G~  314 (523)
T 1mo9_A          307 FVFLGLGE  314 (523)
T ss_dssp             CEEECCCC
T ss_pred             EEEECcCC
Confidence            66666664

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.32  E-value=8e-06  Score=61.77  Aligned_cols=90  Identities=24%  Similarity=0.364  Sum_probs=64.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+.....                                    
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~~l~~------------------------------------  236 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWAR------LGAKVTVVEFLDTILGG------------------------------------  236 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------HTCEEEEECSSSSSSSS------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCEEEEEecccccccc------------------------------------
Confidence            479999999999999999999      78999999887643210                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----------EEeCC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----------IATGD  172 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----------v~~~~  172 (182)
                               +                + ..+.+.+.+.+++.|++++.+++|++++.++++..+.          ....|
T Consensus       237 ---------~----------------d-~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D  290 (491)
T 3urh_A          237 ---------M----------------D-GEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAE  290 (491)
T ss_dssp             ---------S----------------C-HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEES
T ss_pred             ---------C----------------C-HHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcC
Confidence                     0                0 1455566777788899999999999997644332221          22346


Q ss_pred             EEEecCCC
Q psy2240         173 VGIAKDGS  180 (182)
Q Consensus       173 ~vi~adG~  180 (182)
                      .||.|.|.
T Consensus       291 ~Vi~a~G~  298 (491)
T 3urh_A          291 VVLIATGR  298 (491)
T ss_dssp             EEEECCCC
T ss_pred             EEEEeeCC
Confidence            67766664

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.32  E-value=1.5e-05  Score=60.45  Aligned_cols=90  Identities=20%  Similarity=0.236  Sum_probs=64.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++|+.+.....                             +      
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~------~g~~Vtlv~~~~~~l~~-----------------------------~------  221 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTE------LGVPVTVVASQDHVLPY-----------------------------E------  221 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHH------TTCCEEEECSSSSSSCC-----------------------------S------
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCccccc-----------------------------c------
Confidence            479999999999999999999      89999999987643200                             0      


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEec
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIAK  177 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~a  177 (182)
                                                 ...+.+.+.+.+++.|++|+.+++|++++.++++..+.     ....|.||.|
T Consensus       222 ---------------------------d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a  274 (499)
T 1xdi_A          222 ---------------------------DADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMT  274 (499)
T ss_dssp             ---------------------------SHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEEC
T ss_pred             ---------------------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEEC
Confidence                                       01345566777788899999999999998644332221     2234566666


Q ss_pred             CCC
Q psy2240         178 DGS  180 (182)
Q Consensus       178 dG~  180 (182)
                      .|.
T Consensus       275 ~G~  277 (499)
T 1xdi_A          275 IGS  277 (499)
T ss_dssp             CCE
T ss_pred             CCC
Confidence            553

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.29  E-value=5.2e-07  Score=69.11  Aligned_cols=37  Identities=41%  Similarity=0.625  Sum_probs=33.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCC-CceEEEEecCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGK-ELKVCLVEKAAEV   63 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~~v~vlE~~~~~   63 (182)
                      ..+|++|||+|++|+.+|..|++      . |.+|+|||+.+..
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~------~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSE------DPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTT------STTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh------CCCCCEEEEecCCcC
Confidence            46899999999999999999998      6 8999999998644

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.28  E-value=1.9e-05  Score=59.54  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+.
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~------~g~~Vtlv~~~~~  219 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHG------LGSETHLVIRGET  219 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHH------TTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCceEEEEeCCc
Confidence            479999999999999999999      8999999998764

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.28  E-value=1e-05  Score=59.00  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||||.+|+-+|..|++      .|.+|+++|+.+.
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~  177 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAE------AGYHVKLIHRGAM  177 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHH------TTCEEEEECSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHh------CCCEEEEEeCCCe
Confidence            579999999999999999999      8999999998764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.28  E-value=2.1e-05  Score=59.61  Aligned_cols=90  Identities=16%  Similarity=0.126  Sum_probs=63.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+.+...                             +      
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~------~g~~Vtlv~~~~~~l~~-----------------------------~------  215 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKR------LGIDSYIFARGNRILRK-----------------------------F------  215 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHT------TTCEEEEECSSSSSCTT-----------------------------S------
T ss_pred             CeEEEECChHHHHHHHHHHHH------cCCeEEEEecCCccCcc-----------------------------c------
Confidence            479999999999999999998      89999999987643200                             0      


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcE-EE-----E-EeCCEEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV-KG-----I-ATGDVGI  175 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~-~~-----v-~~~~~vi  175 (182)
                                                + ..+.+.+.+.+++.|++++.+++|++++.++++.+ +.     . ...|.||
T Consensus       216 --------------------------d-~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi  268 (500)
T 1onf_A          216 --------------------------D-ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVI  268 (500)
T ss_dssp             --------------------------C-HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEE
T ss_pred             --------------------------c-hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEE
Confidence                                      0 13445566777888999999999999986443321 11     1 3446666


Q ss_pred             ecCCC
Q psy2240         176 AKDGS  180 (182)
Q Consensus       176 ~adG~  180 (182)
                      .|.|.
T Consensus       269 ~a~G~  273 (500)
T 1onf_A          269 YCVGR  273 (500)
T ss_dssp             ECCCB
T ss_pred             ECCCC
Confidence            66654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.28  E-value=2.4e-05  Score=57.80  Aligned_cols=88  Identities=20%  Similarity=0.305  Sum_probs=63.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+.....                                    
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~~l~~------------------------------------  183 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATART------AGVHVSLVETQPRLMSR------------------------------------  183 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSSSSTT------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHh------CCCEEEEEEeCCccccc------------------------------------
Confidence            579999999999999999999      89999999987643100                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE----EEEeCCEEEecC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK----GIATGDVGIAKD  178 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~----~v~~~~~vi~ad  178 (182)
                                 .             + ...+.+.+.+.+++.|++++.+++|++++ ++  .+.    .....|.||.|.
T Consensus       184 -----------~-------------~-~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~--~v~~~~g~~i~~D~vi~a~  235 (408)
T 2gqw_A          184 -----------A-------------A-PATLADFVARYHAAQGVDLRFERSVTGSV-DG--VVLLDDGTRIAADMVVVGI  235 (408)
T ss_dssp             -----------T-------------S-CHHHHHHHHHHHHHTTCEEEESCCEEEEE-TT--EEEETTSCEEECSEEEECS
T ss_pred             -----------c-------------c-CHHHHHHHHHHHHHcCcEEEeCCEEEEEE-CC--EEEECCCCEEEcCEEEECc
Confidence                       0             0 01345566777788899999999999986 22  221    133457777666


Q ss_pred             CC
Q psy2240         179 GS  180 (182)
Q Consensus       179 G~  180 (182)
                      |.
T Consensus       236 G~  237 (408)
T 2gqw_A          236 GV  237 (408)
T ss_dssp             CE
T ss_pred             CC
Confidence            63

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.28  E-value=1.7e-05  Score=56.30  Aligned_cols=34  Identities=24%  Similarity=0.466  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||+|.+|+-+|..|++      .|.+|+++++.+.
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~------~g~~Vtlv~~~~~  179 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSN------IASEVHLIHRRDG  179 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTT------TSSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh------cCCeEEEEEeCCc
Confidence            479999999999999999998      7999999998753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.26  E-value=2e-05  Score=59.30  Aligned_cols=90  Identities=23%  Similarity=0.287  Sum_probs=65.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCC-CceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGK-ELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      .+++|||+|..|+-+|..|++      . |.+|+++|+.+.....                                   
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~------~~g~~Vtlv~~~~~~l~~-----------------------------------  198 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLAD------MWGIDTTVVELADQIMPG-----------------------------------  198 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------HHCCEEEEECSSSSSSTT-----------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHH------hcCCcEEEEEccCccccc-----------------------------------
Confidence            479999999999999999999      7 8999999987532100                                   


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------EEeCCEEE
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------IATGDVGI  175 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------v~~~~~vi  175 (182)
                                  .             . ...+.+.+.+.+++.|++++.+++|++++. +++.+..      ....|.||
T Consensus       199 ------------~-------------~-~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~v~~~~g~~i~aD~Vv  251 (472)
T 3iwa_A          199 ------------F-------------T-SKSLSQMLRHDLEKNDVVVHTGEKVVRLEG-ENGKVARVITDKRTLDADLVI  251 (472)
T ss_dssp             ------------T-------------S-CHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEESSCEEECSEEE
T ss_pred             ------------c-------------c-CHHHHHHHHHHHHhcCCEEEeCCEEEEEEc-cCCeEEEEEeCCCEEEcCEEE
Confidence                        0             0 024667777788889999999999999986 3333321      23457777


Q ss_pred             ecCCC
Q psy2240         176 AKDGS  180 (182)
Q Consensus       176 ~adG~  180 (182)
                      .|.|.
T Consensus       252 ~a~G~  256 (472)
T 3iwa_A          252 LAAGV  256 (472)
T ss_dssp             ECSCE
T ss_pred             ECCCC
Confidence            77664

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.25  E-value=2.3e-05  Score=58.81  Aligned_cols=34  Identities=29%  Similarity=0.454  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+.
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~  205 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKN------YGVDVTIVEFLPR  205 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHH------cCCeEEEEEcCCc
Confidence            479999999999999999999      8999999998764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.25  E-value=7.9e-06  Score=61.68  Aligned_cols=71  Identities=18%  Similarity=0.126  Sum_probs=55.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+.....                             .      
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~------~G~~Vtlv~~~~~~l~~-----------------------------~------  224 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYST------LGSRLDVVEMMDGLMQG-----------------------------A------  224 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHH------HTCEEEEECSSSSSSTT-----------------------------S------
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEEECCccccc-----------------------------c------
Confidence            479999999999999999999      78999999987643200                             0      


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHG  161 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~  161 (182)
                                                 ...+.+.+.+.+++.|++++++++|++++.++
T Consensus       225 ---------------------------~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~  256 (482)
T 1ojt_A          225 ---------------------------DRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKE  256 (482)
T ss_dssp             ---------------------------CHHHHHHHHHHHGGGEEEEECSCEEEEEEEET
T ss_pred             ---------------------------CHHHHHHHHHHHHhcCCEEEECCEEEEEEEcC
Confidence                                       01344566677778899999999999997643

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.23  E-value=1.3e-06  Score=64.30  Aligned_cols=35  Identities=37%  Similarity=0.582  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|||||++|+++|..|.+.    +++.+|+|||+++.
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~----~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLA----DPSIEVTLIEPNET   38 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH----CTTSEEEEECSCSS
T ss_pred             EEEEECCcHHHHHHHHHHHhc----CcCCeEEEEeCCCC
Confidence            599999999999999999873    24579999999864

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.23  E-value=2.8e-05  Score=58.20  Aligned_cols=91  Identities=20%  Similarity=0.149  Sum_probs=64.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++|+.+......                                   
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~~l~~~-----------------------------------  186 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVK------MKKTVHVFESLENLLPKY-----------------------------------  186 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSSSSTTT-----------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCeEEEEEccCcccccc-----------------------------------
Confidence            479999999999999999999      899999999876431000                                   


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE----EEeCCEEEecC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG----IATGDVGIAKD  178 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~----v~~~~~vi~ad  178 (182)
                                               ++ ..+.+.+.+.+++.|++++.+++|++++.++++..+.    ....|.||.|.
T Consensus       187 -------------------------~d-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~i~aD~Vv~A~  240 (452)
T 3oc4_A          187 -------------------------FD-KEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQEISCDSGIFAL  240 (452)
T ss_dssp             -------------------------CC-HHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSCEEEESEEEECS
T ss_pred             -------------------------CC-HHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCCEEEeCEEEECc
Confidence                                     00 1456677777888899999999999998634332111    22346666666


Q ss_pred             CC
Q psy2240         179 GS  180 (182)
Q Consensus       179 G~  180 (182)
                      |.
T Consensus       241 G~  242 (452)
T 3oc4_A          241 NL  242 (452)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.23  E-value=2.9e-05  Score=58.28  Aligned_cols=89  Identities=19%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++++.+.....                                    
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~------~g~~Vt~v~~~~~~l~~------------------------------------  208 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHG------LGVKTTLIYRGKEILSR------------------------------------  208 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSSTT------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCccccc------------------------------------
Confidence            479999999999999999999      89999999987532100                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEE-------eCCEEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIA-------TGDVGI  175 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~-------~~~~vi  175 (182)
                               +                + ..+.+.+.+.+++.|++++.+++|++++.++++.+ .+.       ..|.||
T Consensus       209 ---------~----------------~-~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~g~i~aD~Vv  261 (463)
T 4dna_A          209 ---------F----------------D-QDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRR-VATTMKHGEIVADQVM  261 (463)
T ss_dssp             ---------S----------------C-HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCE-EEEESSSCEEEESEEE
T ss_pred             ---------c----------------C-HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEE-EEEEcCCCeEEeCEEE
Confidence                     0                0 13566777778889999999999999987545432 222       346666


Q ss_pred             ecCCC
Q psy2240         176 AKDGS  180 (182)
Q Consensus       176 ~adG~  180 (182)
                      .|.|.
T Consensus       262 ~a~G~  266 (463)
T 4dna_A          262 LALGR  266 (463)
T ss_dssp             ECSCE
T ss_pred             EeeCc
Confidence            66553

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.22  E-value=2.6e-05  Score=59.91  Aligned_cols=34  Identities=29%  Similarity=0.460  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||||..|+-+|..|++      .|.+|+++|+.+.
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtlv~~~~~  185 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHH------LGIKTTLLELADQ  185 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh------cCCcEEEEEcCCc
Confidence            379999999999999999999      8999999998754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.22  E-value=2.4e-05  Score=59.26  Aligned_cols=90  Identities=23%  Similarity=0.183  Sum_probs=63.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCC---CceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhh
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGK---ELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHED   99 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~---g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
                      ..++|||||..|+-+|..|++      .   |.+|+++|+.+.....                             +   
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~------~~~~g~~Vtlv~~~~~~l~~-----------------------------~---  233 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNA------YKPPGGKVTLCYRNNLILRG-----------------------------F---  233 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHH------HCCTTCEEEEEESSSSSCTT-----------------------------S---
T ss_pred             CeEEEECCCHHHHHHHHHHHh------hCCCCCeEEEEEcCCccccc-----------------------------c---
Confidence            479999999999999999998      6   8999999987643200                             0   


Q ss_pred             hHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE-E-----EEeCCE
Q psy2240         100 KFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK-G-----IATGDV  173 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~-~-----v~~~~~  173 (182)
                                                   + ..+.+.+.+.+++.|++++++++|+++..++++.+. .     ....|.
T Consensus       234 -----------------------------d-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~  283 (495)
T 2wpf_A          234 -----------------------------D-ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDV  283 (495)
T ss_dssp             -----------------------------C-HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESE
T ss_pred             -----------------------------C-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCE
Confidence                                         0 134456666777889999999999999864433221 1     223466


Q ss_pred             EEecCCC
Q psy2240         174 GIAKDGS  180 (182)
Q Consensus       174 vi~adG~  180 (182)
                      ||.|.|.
T Consensus       284 vv~a~G~  290 (495)
T 2wpf_A          284 VMMAIGR  290 (495)
T ss_dssp             EEECSCE
T ss_pred             EEECCCC
Confidence            6666653

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=98.20  E-value=1.4e-06  Score=67.34  Aligned_cols=38  Identities=32%  Similarity=0.511  Sum_probs=33.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .++|++|||+|++|+++|..|++.     .|.+|+|||++...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~-----~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTEN-----PKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTS-----TTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC-----CCCcEEEEecCCcc
Confidence            568999999999999999999972     48999999998643

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.19  E-value=3.1e-05  Score=58.31  Aligned_cols=90  Identities=14%  Similarity=0.100  Sum_probs=64.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++++.+....                                     
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~------~g~~Vtlv~~~~~~l~-------------------------------------  217 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWAR------LGAEVTVLEAMDKFLP-------------------------------------  217 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSSSST-------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCCcCc-------------------------------------
Confidence            479999999999999999999      8999999998653210                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE--------EEeCCEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG--------IATGDVG  174 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~--------v~~~~~v  174 (182)
                                 .+              ...+.+.+.+.+++.|++++.+++|++++.++++..+.        ....|.|
T Consensus       218 -----------~~--------------~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~v  272 (476)
T 3lad_A          218 -----------AV--------------DEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKL  272 (476)
T ss_dssp             -----------TS--------------CHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEE
T ss_pred             -----------cc--------------CHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEE
Confidence                       00              01355666777788899999999999998644432221        2234666


Q ss_pred             EecCCC
Q psy2240         175 IAKDGS  180 (182)
Q Consensus       175 i~adG~  180 (182)
                      |.|.|.
T Consensus       273 i~a~G~  278 (476)
T 3lad_A          273 IVAVGR  278 (476)
T ss_dssp             EECSCE
T ss_pred             EEeeCC
Confidence            666653

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.18  E-value=2.1e-06  Score=63.91  Aligned_cols=35  Identities=37%  Similarity=0.673  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|||||++|+++|..|++.    +++.+|+|||+++.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~----~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNL----MPDLKITLISDRPY   38 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHH----CTTCEEEEECSSSE
T ss_pred             cEEEECCCHHHHHHHHHHhcc----CcCCeEEEEcCCCC
Confidence            599999999999999999883    24589999999863

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.14  E-value=2e-06  Score=64.13  Aligned_cols=37  Identities=27%  Similarity=0.532  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      +|+|||||++|+++|..|++.    ++..+|+|||+++...
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~----g~~~~V~lie~~~~~~   38 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRL----DKESDIIIFEKDRDMS   38 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHH----CSSSCEEEEESSSCSS
T ss_pred             eEEEECCCHHHHHHHHHHHhC----CCCCcEEEEeCCCCCC
Confidence            599999999999999999982    2336899999987543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.11  E-value=3.4e-05  Score=59.64  Aligned_cols=89  Identities=22%  Similarity=0.287  Sum_probs=63.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++|+.+.....                                    
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtlv~~~~~~l~~------------------------------------  225 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRE------RGIEVTLVEMANQVMPP------------------------------------  225 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSCTT------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHh------CCCeEEEEecCCccccc------------------------------------
Confidence            479999999999999999999      89999999987543210                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE----EEEeCCEEEecC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK----GIATGDVGIAKD  178 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~----~v~~~~~vi~ad  178 (182)
                               +                 ...+.+.+.+.+++.|++++.+++|++++.+.+ .+.    .....|.||.|.
T Consensus       226 ---------~-----------------~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~v~~~~g~~i~~D~Vi~a~  278 (588)
T 3ics_A          226 ---------I-----------------DYEMAAYVHEHMKNHDVELVFEDGVDALEENGA-VVRLKSGSVIQTDMLILAI  278 (588)
T ss_dssp             ---------S-----------------CHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT-EEEETTSCEEECSEEEECS
T ss_pred             ---------C-----------------CHHHHHHHHHHHHHcCCEEEECCeEEEEecCCC-EEEECCCCEEEcCEEEEcc
Confidence                     0                 013455666777788999999999999875322 221    133457777666


Q ss_pred             CC
Q psy2240         179 GS  180 (182)
Q Consensus       179 G~  180 (182)
                      |.
T Consensus       279 G~  280 (588)
T 3ics_A          279 GV  280 (588)
T ss_dssp             CE
T ss_pred             CC
Confidence            64

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.10  E-value=5.1e-05  Score=57.27  Aligned_cols=72  Identities=18%  Similarity=0.273  Sum_probs=55.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++++......                ++                   
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~l~~----------------~d-------------------  226 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKG------LGYEPTVMVRSIVLRG----------------FD-------------------  226 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSCSSTT----------------SC-------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHH------cCCEEEEEeCCCCCcc----------------cC-------------------
Confidence            469999999999999999999      8999999987421100                00                   


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG  163 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g  163 (182)
                                                  ..+.+.+.+.+++.|++++.+++|++++.++++
T Consensus       227 ----------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~  259 (483)
T 3dgh_A          227 ----------------------------QQMAELVAASMEERGIPFLRKTVPLSVEKQDDG  259 (483)
T ss_dssp             ----------------------------HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTS
T ss_pred             ----------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC
Confidence                                        134556677778889999999999999864444

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.10  E-value=2.2e-06  Score=65.04  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +..|||||||++|+++|..|++      .+.+|+|||+++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~------~~~~VtLId~~~   75 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDT------KKYNVSIISPRS   75 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCT------TTCEEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHhhh------CCCcEEEECCCC
Confidence            3579999999999999999987      789999999986

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.09  E-value=8.1e-05  Score=56.09  Aligned_cols=73  Identities=25%  Similarity=0.164  Sum_probs=56.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++++.+.....                                    
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~~l~~------------------------------------  225 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSA------LGSKTSLMIRHDKVLRS------------------------------------  225 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSCTT------------------------------------
T ss_pred             ccEEEECCCHHHHHHHHHHHH------cCCeEEEEEeCCccccc------------------------------------
Confidence            479999999999999999999      89999999987542200                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG  163 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g  163 (182)
                               +                 ...+.+.+.+.+++.|++++.+++|++++.++++
T Consensus       226 ---------~-----------------d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~  260 (478)
T 3dk9_A          226 ---------F-----------------DSMISTNCTEELENAGVEVLKFSQVKEVKKTLSG  260 (478)
T ss_dssp             ---------S-----------------CHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSS
T ss_pred             ---------c-----------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCC
Confidence                     0                 0124456666777889999999999999865555

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.08  E-value=6.1e-05  Score=56.45  Aligned_cols=38  Identities=21%  Similarity=0.379  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ..+|+|||||.+|+-+|..|++.    ..+.+|++++|.+..
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~----~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDS----YPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH----CTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhc----CCCCeEEEEEeCCCC
Confidence            35799999999999999999982    128899999998753

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.05  E-value=7.1e-05  Score=56.56  Aligned_cols=72  Identities=15%  Similarity=0.224  Sum_probs=54.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++++......                                     
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~------~g~~Vtlv~~~~~l~~-------------------------------------  222 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTG------IGLDTTVMMRSIPLRG-------------------------------------  222 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH------TTCCEEEEESSCSSTT-------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCceEEEEcCccccc-------------------------------------
Confidence            369999999999999999999      8999999997531100                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG  163 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g  163 (182)
                               +                + ..+.+.+.+.+++.|++++.++++++++..+++
T Consensus       223 ---------~----------------d-~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~  257 (488)
T 3dgz_A          223 ---------F----------------D-QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTN  257 (488)
T ss_dssp             ---------S----------------C-HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTS
T ss_pred             ---------C----------------C-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCC
Confidence                     0                0 134556677778889999999999998764443

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.03  E-value=5.5e-05  Score=57.89  Aligned_cols=72  Identities=15%  Similarity=0.167  Sum_probs=55.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-.|..+++      .|.+|+|+++......                                     
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~------lG~~VTii~~~~~L~~-------------------------------------  260 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNS------LGYDVTVAVRSIVLRG-------------------------------------  260 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH------HTCCEEEEESSCSSTT-------------------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHh------cCCeEEEecccccccc-------------------------------------
Confidence            479999999999999999999      7999999987432110                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG  163 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g  163 (182)
                               +                + .++.+.+.+.+++.|++++.++.+..++..++.
T Consensus       261 ---------~----------------D-~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~  295 (542)
T 4b1b_A          261 ---------F----------------D-QQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDK  295 (542)
T ss_dssp             ---------S----------------C-HHHHHHHHHHHHHTTCEEEETCCEEEEEEETTE
T ss_pred             ---------c----------------c-hhHHHHHHHHHHhhcceeecceEEEEEEecCCe
Confidence                     0                0 135566677778899999999999999875443

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.02  E-value=2.5e-05  Score=56.56  Aligned_cols=34  Identities=35%  Similarity=0.546  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|||+|.+|+-+|..|++      .|.+|+++++.+.
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~------~g~~V~lv~~~~~  197 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIK------NAASVTLVHRGHE  197 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTT------TSSEEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHh------cCCEEEEEEcCCC
Confidence            479999999999999999998      7899999998754

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.00  E-value=3e-05  Score=56.85  Aligned_cols=35  Identities=17%  Similarity=0.195  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .+++|||||..|+-+|..|++      .|.+|+++|+.+..
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~------~g~~Vtvv~~~~~~  181 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIID------SGTPASIGIILEYP  181 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH------HTCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh------CCCeEEEEEcCCcc
Confidence            479999999999999999999      78999999998754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.00  E-value=0.00016  Score=53.99  Aligned_cols=34  Identities=26%  Similarity=0.499  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||+|..|+-+|..|++      .|.+|+++|+.+.
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~  182 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAA------QGKNVTMIVRGER  182 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh------CCCeEEEEEcCCc
Confidence            379999999999999999999      8999999998764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.97  E-value=5.7e-05  Score=53.94  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||+|.+|+-+|..|++      .|.+|+++++.+.
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~------~g~~v~~v~~~~~  207 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTK------YGSKVFMLVRKDH  207 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTT------TSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh------cCCEEEEEEcCCc
Confidence            469999999999999999998      7899999998754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.97  E-value=7.2e-05  Score=53.16  Aligned_cols=33  Identities=33%  Similarity=0.521  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++++.+
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~------~g~~V~~i~~~~  188 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSE------YVKNVTIIEYMP  188 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTT------TBSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh------hCCcEEEEEcCC
Confidence            479999999999999999998      789999999865

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.90  E-value=0.00017  Score=51.01  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|||+|..|+-+|..|++      .|.+|+++++.+.
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~------~g~~Vtlv~~~~~  177 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLAN------ICKKVYLIHRRDG  177 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHT------TSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh------cCCEEEEEeeCCc
Confidence            579999999999999999998      7899999998753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.89  E-value=0.00015  Score=52.42  Aligned_cols=34  Identities=24%  Similarity=0.472  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|||+|.+|+-+|..|++      .|.+|+++++.+.
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~------~g~~V~lv~~~~~  200 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAK------NGSDIALYTSTTG  200 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECC---
T ss_pred             CEEEEECCCcCHHHHHHHHHh------cCCeEEEEecCCC
Confidence            379999999999999999999      7999999998754

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.88  E-value=0.00018  Score=54.43  Aligned_cols=94  Identities=23%  Similarity=0.258  Sum_probs=61.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++....  .|.+|+++++.+.....                                    
T Consensus       181 ~~vvViGgG~iG~E~A~~l~~~~~~--~g~~V~~v~~~~~~~~~------------------------------------  222 (493)
T 1m6i_A          181 KSITIIGGGFLGSELACALGRKARA--LGTEVIQLFPEKGNMGK------------------------------------  222 (493)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHH--HTCEEEEECSSSSTTTT------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhh--cCCEEEEEecCcccccc------------------------------------
Confidence            4799999999999999999873211  26789999876431100                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE-E-----EEeCCEEEe
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK-G-----IATGDVGIA  176 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~-~-----v~~~~~vi~  176 (182)
                                 .+             + ..+.+.+.+.+++.|++++.+++|+++..++ +.+. .     ....|.||.
T Consensus       223 -----------~l-------------~-~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~-~~~~v~l~dG~~i~aD~Vv~  276 (493)
T 1m6i_A          223 -----------IL-------------P-EYLSNWTMEKVRREGVKVMPNAIVQSVGVSS-GKLLIKLKDGRKVETDHIVA  276 (493)
T ss_dssp             -----------TS-------------C-HHHHHHHHHHHHTTTCEEECSCCEEEEEEET-TEEEEEETTSCEEEESEEEE
T ss_pred             -----------cC-------------C-HHHHHHHHHHHHhcCCEEEeCCEEEEEEecC-CeEEEEECCCCEEECCEEEE
Confidence                       00             0 1344556677788899999999999997533 2221 0     223466766


Q ss_pred             cCCC
Q psy2240         177 KDGS  180 (182)
Q Consensus       177 adG~  180 (182)
                      |.|.
T Consensus       277 a~G~  280 (493)
T 1m6i_A          277 AVGL  280 (493)
T ss_dssp             CCCE
T ss_pred             CCCC
Confidence            6663

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.87  E-value=0.00017  Score=50.88  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++++.+.
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~------~g~~v~~~~~~~~  181 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLAN------ICSKIYLIHRRDE  181 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHT------TSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh------hCCEEEEEEeCCC
Confidence            479999999999999999999      7899999998754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.84  E-value=0.00016  Score=51.04  Aligned_cols=34  Identities=41%  Similarity=0.563  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|||+|.+|+-+|..|++      .|.+|+++++.+.
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~------~g~~Vtlv~~~~~  178 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAG------IVEHVTLLEFAPE  178 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT------TBSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHH------hCCEEEEEEeCcc
Confidence            479999999999999999998      7899999998754

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.83  E-value=0.0002  Score=54.31  Aligned_cols=27  Identities=7%  Similarity=0.142  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHcCcEEecCCccceeE
Q psy2240         132 HVVKWLGEQAEAMGVEIYPGIPASEVL  158 (182)
Q Consensus       132 ~l~~~l~~~~~~~gv~i~~~~~v~~i~  158 (182)
                      .+.+.+.+.+++.||+++.+++|++++
T Consensus       273 ~~~~~~~~~L~~~GV~v~~~~~v~~v~  299 (502)
T 4g6h_A          273 KLSSYAQSHLENTSIKVHLRTAVAKVE  299 (502)
T ss_dssp             HHHHHHHHHHHHTTCEEETTEEEEEEC
T ss_pred             HHHHHHHHHHHhcceeeecCceEEEEe
Confidence            466677778888999999999999885

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.83  E-value=0.00011  Score=54.69  Aligned_cols=34  Identities=21%  Similarity=0.416  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||||..|+-+|..+++      .|.+|+++|+.+.
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~------~g~~Vtlv~~~~~  181 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYE------RGLHPTLIHRSDK  181 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------HTCEEEEEESSSC
T ss_pred             cEEEEECCccchhhhHHHHHh------cCCcceeeeeecc
Confidence            379999999999999999999      7999999998764

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.78  E-value=0.00027  Score=53.88  Aligned_cols=32  Identities=19%  Similarity=0.259  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~------~G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAG------IGLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH------TTCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHH------cCCeEEEEecc
Confidence            369999999999999999999      89999999974

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.78  E-value=0.0003  Score=50.25  Aligned_cols=34  Identities=26%  Similarity=0.524  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|||+|.+|+-+|..|++      .|.+|+++++.+.
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~------~g~~V~~v~~~~~  186 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLD------TARRITLIHRRPQ  186 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTT------TSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh------hCCEEEEEEcCCc
Confidence            479999999999999999998      7899999998753

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.69  E-value=0.0005  Score=48.90  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||+|.+|+-+|..|++      .|.+|+++++.+.
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~------~g~~Vtlv~~~~~  186 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTK------FADEVTVIHRRDT  186 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT------TCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh------cCCEEEEEeCCCc
Confidence            479999999999999999998      7899999998753

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.68  E-value=0.00037  Score=54.98  Aligned_cols=35  Identities=31%  Similarity=0.259  Sum_probs=31.0

Q ss_pred             ccEEEEC--CChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVG--GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIG--gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .+|+|||  +|.+|+-+|..|++      .|.+|+++++.+..
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~------~g~~Vtlv~~~~~l  560 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQ------KGYEVSIVTPGAQV  560 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHH------TTCEEEEEESSSST
T ss_pred             CEEEEEcCCCCccHHHHHHHHHh------CCCeeEEEeccccc
Confidence            3599999  99999999999999      89999999987643

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.67  E-value=0.00022  Score=50.90  Aligned_cols=34  Identities=24%  Similarity=0.425  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|||+|.+|+-+|..|++      .|.+|+++++.+.
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~------~g~~V~lv~~~~~  193 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTK------YGSKVYIIHRRDA  193 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTT------TSSEEEEECSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHh------cCCeEEEEecCCc
Confidence            479999999999999999988      7899999998754

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.66  E-value=8.4e-05  Score=47.26  Aligned_cols=35  Identities=26%  Similarity=0.232  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...|+|+|+|..|..+|..|.+      .|.+|+++|+++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~------~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASS------SGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHh------CCCeEEEEECCHH
Confidence            3479999999999999999998      8999999998764

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.57  E-value=0.0011  Score=49.82  Aligned_cols=34  Identities=24%  Similarity=0.424  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++++.+.
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtlv~~~~~  206 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRL------MGVQTHIIEMLDR  206 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH------cCCEEEEEEeCCc
Confidence            469999999999999999999      8999999998764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.57  E-value=0.00013  Score=45.58  Aligned_cols=35  Identities=17%  Similarity=0.358  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .-.|+|||.|..|..+|..|.+      .|.+|+++|+++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~------~g~~v~vid~~~~   41 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLA------SDIPLVVIETSRT   41 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH------TTCCEEEEESCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHH------CCCCEEEEECCHH
Confidence            3469999999999999999999      8999999999863

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.53  E-value=0.00094  Score=47.44  Aligned_cols=34  Identities=24%  Similarity=0.443  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+++++.+.
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~------~~~~v~~~~~~~~  188 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEP------IAKEVSIIHRRDK  188 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTT------TBSEEEEECSSSS
T ss_pred             CEEEEECCCHhHHHHHHHHHh------hCCeEEEEEecCc
Confidence            479999999999999999998      7889999998754

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.49  E-value=0.00012  Score=51.96  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=32.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      ..++|||||..|+-+|..|++      .|.+|+|+|+.+...
T Consensus       146 k~vvViGgG~ig~E~A~~l~~------~g~~Vtlv~~~~~~~  181 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTK------FADKVTIVHRRDELR  181 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT------TCSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHh------cCCEEEEEecccccC
Confidence            479999999999999999998      799999999987543

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=97.41  E-value=0.00041  Score=51.87  Aligned_cols=34  Identities=32%  Similarity=0.511  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|..+|..|++      .|++|+++|+++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~------aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGL------AGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHH------CCCeEEEEECcHH
Confidence            469999999999999999999      8999999998865

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.40  E-value=0.00031  Score=44.46  Aligned_cols=33  Identities=12%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|+|+|..|...|..|.+      .|.+|+++|+++
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~------~g~~V~vid~~~   36 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQ------RGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH------TTCCEEEEECCC
T ss_pred             CcEEEECCCHHHHHHHHHHHH------CCCCEEEEECCC
Confidence            469999999999999999998      899999999974

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.39  E-value=0.00024  Score=44.02  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|||+|..|..+|..|.+      .|.+|+++|+++
T Consensus         6 ~i~IiG~G~iG~~~a~~L~~------~g~~v~~~d~~~   37 (140)
T 1lss_A            6 YIIIAGIGRVGYTLAKSLSE------KGHDIVLIDIDK   37 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCeEEEEECCH
Confidence            59999999999999999998      899999999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.38  E-value=0.00023  Score=44.38  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .++|+|+|..|..+|..|.+      .|.+|+++|+++
T Consensus         8 ~v~I~G~G~iG~~la~~L~~------~g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTA------AGKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHH------TTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHH------CCCeEEEEECCH
Confidence            69999999999999999999      899999999875

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.37  E-value=0.0019  Score=45.58  Aligned_cols=35  Identities=26%  Similarity=0.398  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...++|||+|..|+-+|..|++      .|.+|+++++.+.
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~------~g~~v~~~~~~~~  188 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSS------YSTKVYLIHRRDT  188 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------HSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------hCCeEEEEEeCCC
Confidence            3579999999999999999999      7899999998754

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.30  E-value=0.00024  Score=50.64  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|.|||+|..|...|..+++      .|++|+++|..+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~------~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFAS------GGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHh------CCCeEEEEECCH
Confidence            469999999999999999999      899999999875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.28  E-value=0.00028  Score=49.87  Aligned_cols=35  Identities=29%  Similarity=0.493  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~------~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTK------YGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTT------TSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHH------hCCeeeeecccccc
Confidence            479999999999999999999      89999999987643

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.23  E-value=0.00052  Score=48.13  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|..+|..|++      .|++|+++|+++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~------~G~~V~l~d~~~~   38 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAF------HGFAVTAYDINTD   38 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCeEEEEeCCHH
Confidence            369999999999999999999      8999999998753

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.19  E-value=0.00064  Score=40.67  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~   61 (182)
                      .|+|+|+|..|..++..|.+      .| .+|+++++.+
T Consensus         7 ~v~I~G~G~iG~~~~~~l~~------~g~~~v~~~~r~~   39 (118)
T 3ic5_A            7 NICVVGAGKIGQMIAALLKT------SSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------CSSEEEEEEESCH
T ss_pred             eEEEECCCHHHHHHHHHHHh------CCCceEEEEeCCH
Confidence            59999999999999999999      88 8999999864

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.16  E-value=0.0007  Score=47.90  Aligned_cols=32  Identities=28%  Similarity=0.441  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||+|..|..+|..|++      .|++|+++|+++
T Consensus        17 ~I~VIG~G~mG~~iA~~la~------~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAA------TGHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCeEEEEECCH
Confidence            59999999999999999999      899999999875

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.13  E-value=0.00041  Score=45.27  Aligned_cols=33  Identities=27%  Similarity=0.273  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCC-CceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGK-ELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~~v~vlE~~~   61 (182)
                      -.|+|||+|..|..+|..|.+      . |.+|+++|+++
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~------~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRA------RYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH------HHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHh------ccCCeEEEEECCH
Confidence            369999999999999999998      7 89999999875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.02  E-value=0.00084  Score=41.65  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|+|+|..|..+|..|.+      .|.+|+++|+.+
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~------~g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHR------MGHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHH------TTCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCH
Confidence            59999999999999999998      789999999864

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.02  E-value=0.00098  Score=47.58  Aligned_cols=32  Identities=19%  Similarity=0.368  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|||+|..|.+.|..|++      .|.+|++++|.+
T Consensus         4 kI~IiGaGaiG~~~a~~L~~------~g~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAK------TGHCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHH------TTCEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHh------CCCeEEEEeCCh
Confidence            69999999999999999999      899999999875

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.96  E-value=0.00073  Score=45.40  Aligned_cols=33  Identities=24%  Similarity=0.442  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|||+|..|..+|..|.+      .|.+|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~------~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLS------RKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHH------TTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCeEEEEECCHH
Confidence            48999999999999999999      8999999998763

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.89  E-value=0.0011  Score=47.18  Aligned_cols=32  Identities=22%  Similarity=0.361  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|||+|..|.+.|..|++      .|.+|++++|++
T Consensus         4 kI~IiGaGaiG~~~a~~L~~------~g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQR------SGEDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHH------TSCCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHH------CCCeEEEEEcCc
Confidence            69999999999999999999      899999999875

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.86  E-value=0.0015  Score=46.60  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..|.|||+|..|.++|..|++      .|+ +|+++|+.+
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~------~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGK------DNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------HTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCceEEEEeCCc
Confidence            369999999999999999998      787 999999875

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.84  E-value=0.0013  Score=49.49  Aligned_cols=35  Identities=11%  Similarity=0.028  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ..|+|||+|.+|+-+|..|++      .|.+|+++++.+.+
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~------~g~~V~li~~~~~~  232 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYK------YGAKKLISCYRTAP  232 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHH------TTCSEEEEECSSCC
T ss_pred             CEEEEEcCCCCHHHHHHHHHH------hCCeEEEEEECCCC
Confidence            479999999999999999999      78999999987643

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.84  E-value=0.0016  Score=47.03  Aligned_cols=33  Identities=27%  Similarity=0.212  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|.|||+|..|...|..|++      .|.+|+++++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~------~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLAL------KGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHh------CCCEEEEEeCCH
Confidence            369999999999999999999      899999999874

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.81  E-value=0.002  Score=45.10  Aligned_cols=33  Identities=15%  Similarity=0.163  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||+|..|...|..|++      .|.+|++++|++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~------~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCK------QGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHh------CCCCEEEEEcCcc
Confidence            48999999999999999999      8999999998764

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.81  E-value=0.0019  Score=46.34  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..|+|||+|-.|.++|..|++      .|+ +|+++|+..
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~------~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCAL------RELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------HTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCCeEEEEECCh
Confidence            369999999999999999998      677 999999875

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.79  E-value=0.0023  Score=42.76  Aligned_cols=34  Identities=18%  Similarity=0.266  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|.+.|..|++      .|.+|+++++.+.
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~------~g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEI------AGHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHH------CCCEEEEEcCCHH
Confidence            369999999999999999999      8999999998764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.77  E-value=0.0016  Score=46.52  Aligned_cols=35  Identities=31%  Similarity=0.514  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ..|+|||+|.+|+-+|..|++      .|.+|+++++.+..
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~------~g~~V~l~~~~~~~  190 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTR------FARSVTLVHRRDEF  190 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTT------TCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHH------hCCeEEEEEcCCcC
Confidence            479999999999999999998      78999999988654

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.76  E-value=0.0019  Score=46.37  Aligned_cols=31  Identities=23%  Similarity=0.368  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      .|+|||+|..|.+.|..|++      .|.+|++++|.
T Consensus         5 kI~IiGaG~~G~~~a~~L~~------~g~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLAL------AGEAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHH------TTCCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHH------CCCEEEEEECh
Confidence            69999999999999999999      89999999985

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.76  E-value=0.0024  Score=45.35  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||.|..|...|..|++      .|++|+++++.+.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~------~G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLK------NGFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHH------CCCeEEEEeCCHH
Confidence            369999999999999999999      8999999999864

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.76  E-value=0.0026  Score=45.44  Aligned_cols=33  Identities=36%  Similarity=0.489  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..|+|||+|-.|..+|..|+.      .|+ +|+++|...
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~------~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQ------KNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCCeEEEEeCCH
Confidence            369999999999999999999      787 899999875

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.75  E-value=0.0024  Score=46.95  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...|+|||+|.+|+.+|..|..      .|.+|+++|+.+.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~------lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARR------LGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHH------CCCEEEEEcCCHH
Confidence            4579999999999999999988      7999999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.73  E-value=0.0015  Score=48.79  Aligned_cols=34  Identities=15%  Similarity=0.183  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~~   62 (182)
                      .+|+|||+|.+|+-+|..|++      .+.+ |+++++.+.
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~------~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTP------VAKHPIYQSLLGGG  247 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTT------TSCSSEEEECTTCC
T ss_pred             CEEEEEccCcCHHHHHHHHHH------HhCCcEEEEeCCCC
Confidence            479999999999999999998      7888 999998763

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.72  E-value=0.0019  Score=50.06  Aligned_cols=32  Identities=13%  Similarity=0.181  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      -.++|||||.+|+-+|..|++      .|.+|+++++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLAS------LGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH------TTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHH------cCCEEEEEECC
Confidence            369999999999999999999      89999999987

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.71  E-value=0.0017  Score=49.80  Aligned_cols=34  Identities=15%  Similarity=0.291  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+|+|||+|.+|+-+|..|++      .+.+|++++|.+.
T Consensus       179 krV~VIG~G~sgve~a~~l~~------~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAP------EVEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTT------TCSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHh------hCCEEEEEECCCC
Confidence            479999999999999999998      7899999999875

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.70  E-value=0.0026  Score=47.55  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +..+.|||.|..|+.+|..|++      .|++|+++|+++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~------~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSD------FGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHH------CCCEEEEEeCCHH
Confidence            4579999999999999999999      8999999999875

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.70  E-value=0.0015  Score=46.14  Aligned_cols=36  Identities=19%  Similarity=0.183  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ...|.|||.|..|...|..|++      .|++|+++++++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~------~G~~V~~~dr~~~~   50 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTE------WPGGVTVYDIRIEA   50 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTT------STTCEEEECSSTTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCHHH
Confidence            3479999999999999999999      89999999998754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.69  E-value=0.0023  Score=48.27  Aligned_cols=33  Identities=18%  Similarity=0.362  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|.|||.|..|+.+|..|++      .|.+|+++|+++
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~------~G~~V~~~d~~~   41 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLAD------IGHDVFCLDVDQ   41 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             ceEEEECcCHHHHHHHHHHHh------CCCEEEEEECCH
Confidence            469999999999999999999      899999999875

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.68  E-value=0.012  Score=46.41  Aligned_cols=27  Identities=30%  Similarity=0.421  Sum_probs=23.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEE
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVC   55 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~   55 (182)
                      ..|+|||||.+|+-+|..|++      .|.+|+
T Consensus       495 ~~VvVIGgG~~g~E~A~~l~~------~G~~vt  521 (671)
T 1ps9_A          495 NKVAIIGCGGIGFDTAMYLSQ------PGESTS  521 (671)
T ss_dssp             SEEEEECCHHHHHHHHHHHTC------CSSCGG
T ss_pred             CeEEEECCChhHHHHHHHHHh------cCCCcc
Confidence            479999999999999999988      676554

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.68  E-value=0.0025  Score=45.39  Aligned_cols=32  Identities=22%  Similarity=0.469  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      .|+|||+|..|..+|..|++      .|.  +|+++|+..
T Consensus         9 kI~IiGaG~vG~~~a~~l~~------~g~~~~V~l~d~~~   42 (319)
T 1lld_A            9 KLAVIGAGAVGSTLAFAAAQ------RGIAREIVLEDIAK   42 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCCCEEEEEeCCh
Confidence            69999999999999999999      788  999999874

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.66  E-value=0.0016  Score=49.96  Aligned_cols=34  Identities=12%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+|+|||+|.+|+-+|..|++      .+.+|++++|.+.
T Consensus       186 krV~VIG~G~tgve~a~~la~------~~~~Vtv~~r~~~  219 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAE------TAKELYVFQRTPN  219 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT------TBSEEEEEESSCC
T ss_pred             CeEEEECCCccHHHHHHHHHh------hCCEEEEEEcCCC
Confidence            479999999999999999998      7899999999875

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.65  E-value=0.0023  Score=48.20  Aligned_cols=34  Identities=21%  Similarity=0.343  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCC-Cc-eEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGK-EL-KVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~-~v~vlE~~~~   62 (182)
                      ..|.|||.|..|+.+|..|++      . |+ +|+++|+++.
T Consensus        19 mkIaVIGlG~mG~~lA~~la~------~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFAD------APCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH------STTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHH------hCCCCeEEEEECChh
Confidence            369999999999999999999      8 99 9999999876

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.64  E-value=0.0031  Score=45.21  Aligned_cols=33  Identities=30%  Similarity=0.522  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..|.|||+|..|.++|..|++      .|+ +|+++|...
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~------~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQ------KDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCCeEEEEECCH
Confidence            369999999999999999999      788 999999875

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.62  E-value=0.0016  Score=45.86  Aligned_cols=32  Identities=31%  Similarity=0.469  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|||+|..|.+.|..|++      .|.+|++++|++
T Consensus         4 kI~iiGaGa~G~~~a~~L~~------~g~~V~~~~r~~   35 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQ------SLPHTTLIGRHA   35 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHH------HCTTCEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHH------CCCeEEEEEecc
Confidence            69999999999999999998      788999999874

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.62  E-value=0.0025  Score=45.10  Aligned_cols=34  Identities=29%  Similarity=0.252  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||.|..|...|..|++      .|.+|+++++.+.
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~------~G~~V~~~dr~~~   41 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLR------AGLSTWGADLNPQ   41 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHH------CCCeEEEEECCHH
Confidence            369999999999999999999      8999999998753

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.62  E-value=0.0021  Score=43.34  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=29.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ...|+|||||.+|...+..|.+      .|.+|+|++..
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~------~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQ------EGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGG------GCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------CCCEEEEECCC
Confidence            3479999999999999999999      79999999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.62  E-value=0.0019  Score=49.60  Aligned_cols=34  Identities=15%  Similarity=0.388  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|||+|.+|+-+|..|++      .+.+|++++|.+.
T Consensus       192 krV~VIG~G~sgve~a~~l~~------~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAE------QAEQLFVFQRSAN  225 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------HBSEEEEEESSCC
T ss_pred             CEEEEECCCchHHHHHHHHHh------hCCEEEEEECCCC
Confidence            479999999999999999999      6889999999875

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.62  E-value=0.0023  Score=43.99  Aligned_cols=34  Identities=29%  Similarity=0.358  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ...|+|||+|-.|..+|..|++      .|. +++++|++.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~------~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLAS------AGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHH------HTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHH------cCCCeEEEEcCCC
Confidence            3579999999999999999999      787 899999886

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=96.61  E-value=0.0018  Score=47.03  Aligned_cols=32  Identities=31%  Similarity=0.485  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||+|..|.+.|..|++      .|.+|+++++.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~------~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSK------KCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTT------TEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHh------CCCEEEEEECCH
Confidence            69999999999999999998      899999999874

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.60  E-value=0.0025  Score=47.93  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|.|||+|..|..+|..|++      .|++|+++|+++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~------~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFAR------VGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT------TTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHh------CCCeEEEEECCH
Confidence            369999999999999999999      899999999875

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.60  E-value=0.0031  Score=44.60  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||+|..|...|..|++      .|.+|+++++++
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~------~g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQ------GGNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHh------CCCcEEEEECCH
Confidence            59999999999999999999      899999999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.59  E-value=0.0015  Score=45.53  Aligned_cols=33  Identities=24%  Similarity=0.505  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|||||-+|...+..|.+      .|.+|+|++...
T Consensus        14 k~VLVVGgG~va~rka~~Ll~------~Ga~VtViap~~   46 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMP------TGCKLTLVSPDL   46 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGG------GTCEEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHh------CCCEEEEEcCCC
Confidence            469999999999999999999      899999998754

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.57  E-value=0.0026  Score=46.39  Aligned_cols=35  Identities=26%  Similarity=0.275  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...|+|||+|.+|+.+|..|..      .|.+|+++|+.+.
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~------lGa~V~v~D~~~~  218 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKR------LGAKTTGYDVRPE  218 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHH------HTCEEEEECSSGG
T ss_pred             CCEEEEECchHHHHHHHHHHHH------CCCEEEEEeCCHH
Confidence            3579999999999999999988      6899999998864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.55  E-value=0.0035  Score=44.97  Aligned_cols=34  Identities=21%  Similarity=0.251  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +..|.|||+|..|...|..|++      .|.+|++++|.+
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~------~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHE------NGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHh------CCCeEEEEeCCH
Confidence            4579999999999999999999      899999999864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.55  E-value=0.0032  Score=47.14  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||.|..|+.+|..|++      .|.+|+++|+++.
T Consensus         4 kI~VIG~G~vG~~lA~~La~------~G~~V~~~D~~~~   36 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAE------LGANVRCIDTDRN   36 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCEEEEECSCHH
T ss_pred             EEEEECcCHHHHHHHHHHHh------cCCEEEEEECCHH
Confidence            59999999999999999999      8999999998753

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.55  E-value=0.0025  Score=48.65  Aligned_cols=35  Identities=40%  Similarity=0.563  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .+|+|||||.+|+-+|..|++      .|.+|+++++.+..
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~------~g~~Vtlv~~~~~l  390 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAG------IVEHVTLLEFAPEM  390 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------HBSEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHh------hCCEEEEEEeCccc
Confidence            479999999999999999999      68999999987654

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.54  E-value=0.0037  Score=44.30  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||.|..|...|..|++      .|++|+++++.+.
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~------~G~~V~~~dr~~~   43 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLK------QGKRVAIWNRSPG   43 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSHH
T ss_pred             CeEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCHH
Confidence            469999999999999999999      8999999998763

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.53  E-value=0.0037  Score=44.31  Aligned_cols=32  Identities=31%  Similarity=0.444  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      .|+|||+|..|.++|..|+.      .|+  +|+++|+..
T Consensus         2 kI~VIGaG~vG~~la~~la~------~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVL------RGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCCCEEEEEeCCH
Confidence            58999999999999999998      788  999999874

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.51  E-value=0.0031  Score=45.74  Aligned_cols=36  Identities=14%  Similarity=0.257  Sum_probs=31.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ....|.|||.|..|...|..|++      .|.+|+++++.+.
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~------~G~~V~v~dr~~~   56 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRK------GGHECVVYDLNVN   56 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHh------CCCEEEEEeCCHH
Confidence            34579999999999999999999      8999999998753

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.47  E-value=0.003  Score=45.77  Aligned_cols=33  Identities=33%  Similarity=0.398  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|.|||+|..|.+.|..|++      .|.+|+++++++
T Consensus        30 mkI~VIGaG~mG~alA~~La~------~G~~V~l~~r~~   62 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLAR------KGQKVRLWSYES   62 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHT------TTCCEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHH------CCCeEEEEeCCH
Confidence            479999999999999999999      899999999874

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.47  E-value=0.0034  Score=47.02  Aligned_cols=33  Identities=24%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|.|||.|.+|+++|..|.+      .|.+|++.|+.+
T Consensus        10 k~v~viG~G~sG~s~A~~l~~------~G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAK------LGAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHH------TTCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHh------CCCEEEEEeCCc
Confidence            469999999999999999999      899999999854

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.45  E-value=0.0025  Score=42.88  Aligned_cols=34  Identities=21%  Similarity=0.388  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEE-EecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCL-VEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~v-lE~~~~   62 (182)
                      ..|.|||+|-.|.+.|..|++      .|.+|++ ++|++.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~------~g~~V~~v~~r~~~   58 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTA------AQIPAIIANSRGPA   58 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHH------TTCCEEEECTTCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCEEEEEECCCHH
Confidence            469999999999999999999      8899999 888754

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.44  E-value=0.005  Score=43.85  Aligned_cols=32  Identities=41%  Similarity=0.592  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~   60 (182)
                      ..|.|||+|..|.++|+.|++      .|+ +|+++|..
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~------~g~~~v~l~D~~   41 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQ------KELADVVLVDIP   41 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCCeEEEEecc
Confidence            479999999999999999999      788 99999987

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.44  E-value=0.0028  Score=47.30  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .|+|||.|.+|+++|..|++      +|.+|++.|.....
T Consensus         7 ~v~viG~G~~G~~~a~~l~~------~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            7 NVVIIGLGLTGLSCVDFFLA------RGVTPRVMDTRMTP   40 (439)
T ss_dssp             CEEEECCHHHHHHHHHHHHT------TTCCCEEEESSSSC
T ss_pred             EEEEEeecHHHHHHHHHHHh------CCCEEEEEECCCCc
Confidence            59999999999999999988      89999999987643

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.43  E-value=0.0032  Score=44.89  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||.|..|...|..|++      .|.+|+++++.+.
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~------~G~~V~~~dr~~~   65 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCE------AGYALQVWNRTPA   65 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHH------TTCEEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHHHHh------CCCeEEEEcCCHH
Confidence            369999999999999999999      8999999998853

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=96.42  E-value=0.0054  Score=43.57  Aligned_cols=35  Identities=20%  Similarity=0.429  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|||+|..|.++|..|++.    +.|.+|+++|+.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~----~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEK----QLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCChh
Confidence            489999999999999999981    12689999998753

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.41  E-value=0.006  Score=43.62  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ..|.|||+|..|.++|..|+.      .|+ +++++|..+.
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~------~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGL------KELGDVVLFDIAEG   42 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCCeEEEEeCCch
Confidence            469999999999999999998      677 9999998753

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.39  E-value=0.0048  Score=45.94  Aligned_cols=35  Identities=17%  Similarity=0.242  Sum_probs=31.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ....|+|||.|-.|+.+|..|++      .|++|+.+|-++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~------~G~~V~g~Did~   54 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFAL------LGHRVVGYDVNP   54 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH------HTCEEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHh------CCCcEEEEECCH
Confidence            34679999999999999999999      799999999875

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.38  E-value=0.0048  Score=43.21  Aligned_cols=33  Identities=24%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||.|..|...|..|++      .|++|+++++++.
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~------~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVK------AGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHH------CCCeEEEEcCCHH
Confidence            59999999999999999999      8999999999864

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.38  E-value=0.0041  Score=45.36  Aligned_cols=35  Identities=34%  Similarity=0.560  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      .+..|+|+|+|.+|+.+|..|..      .|. +|+++|+..
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~------~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLA------AGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHH------HTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHH------cCCCeEEEEECCC
Confidence            34689999999999999999988      688 999999974

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=96.38  E-value=0.0044  Score=46.82  Aligned_cols=34  Identities=26%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|..+|..|++      .|++|+++|+++.
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~------aG~~V~l~D~~~e   39 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAAS------HGHQVLLYDISAE   39 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH------TTCCEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHH------CCCeEEEEECCHH
Confidence            369999999999999999999      8999999998753

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.38  E-value=0.0048  Score=42.23  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...|.|||.|-.|.+.|..|++      .|.+|++++|.+.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~------~G~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALAD------LGHEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHH------CCCEEEEEeCChh
Confidence            3469999999999999999999      8999999998764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.37  E-value=0.0039  Score=46.14  Aligned_cols=32  Identities=22%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|||.|-.|..+|..|.+      .|++|++||+++
T Consensus         6 ~viIiG~Gr~G~~va~~L~~------~g~~vvvId~d~   37 (413)
T 3l9w_A            6 RVIIAGFGRFGQITGRLLLS------SGVKMVVLDHDP   37 (413)
T ss_dssp             SEEEECCSHHHHHHHHHHHH------TTCCEEEEECCH
T ss_pred             eEEEECCCHHHHHHHHHHHH------CCCCEEEEECCH
Confidence            59999999999999999999      899999999985

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.37  E-value=0.0051  Score=43.84  Aligned_cols=32  Identities=25%  Similarity=0.319  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|||+|..|.+.|..|++      .|.+|+++ +++
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~------~G~~V~l~-~~~   51 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLAR------AGHEVILI-ARP   51 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH------TTCEEEEE-CCH
T ss_pred             CcEEEECcCHHHHHHHHHHHH------CCCeEEEE-EcH
Confidence            469999999999999999999      89999999 654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.33  E-value=0.0019  Score=48.52  Aligned_cols=32  Identities=25%  Similarity=0.464  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|+|+|-.|..+|..|..      .|.+|++||+++
T Consensus         5 ~iiI~G~G~vG~~la~~L~~------~~~~v~vId~d~   36 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVG------ENNDITIVDKDG   36 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCS------TTEEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHH------CCCCEEEEECCH
Confidence            49999999999999999988      899999999986

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.31  E-value=0.0054  Score=45.21  Aligned_cols=35  Identities=29%  Similarity=0.332  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...|+|||+|.+|+.++..+..      .|.+|+++|+.+.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~------~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANS------LGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------CCCEEEEEcCCHH
Confidence            3479999999999999998887      7999999998764

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.31  E-value=0.0044  Score=46.21  Aligned_cols=32  Identities=25%  Similarity=0.247  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||.|..|+.+|..|++      .|.+|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~la~------~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSA------RGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            48999999999999999999      899999999875

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.30  E-value=0.0056  Score=45.91  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      .+|+|||||.+|+-+|..+.+      .|. +|+++++.+.
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r------~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIR------QGATSVKCLYRRDR  299 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHH------TTCSEEEEECSSCS
T ss_pred             CEEEEECCChhHHHHHHHHHH------cCCCEEEEEEeCCc
Confidence            479999999999999999998      777 5999998764

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.27  E-value=0.0082  Score=42.85  Aligned_cols=34  Identities=29%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ..|.|||+|..|.++|..|++      .++ +++++|..+.
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~------~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALI------KQLGDVVLFDIAQG   40 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCceEEEEeCChH
Confidence            469999999999999999998      666 9999998753

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.25  E-value=0.0019  Score=40.39  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...|+|||+|..|...+..|.+      .|.+|+++++.+.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~------~g~~v~v~~r~~~   55 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSY------PQYKVTVAGRNID   55 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCT------TTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh------CCCEEEEEcCCHH
Confidence            3469999999999999999987      7889999998753

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.25  E-value=0.0062  Score=42.81  Aligned_cols=35  Identities=29%  Similarity=0.312  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ....|+|||+|-.|+.+|..|++      .|+ +++|+|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~------aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTR------CGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHH------HTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHH------cCCCEEEEECCCc
Confidence            34689999999999999999999      675 899999876

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.24  E-value=0.0075  Score=42.83  Aligned_cols=34  Identities=21%  Similarity=0.234  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|...|..|++      .|.+|+++++.+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~------~g~~V~~~~~~~~   64 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLK------MGHTVTVWNRTAE   64 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH------TTCCEEEECSSGG
T ss_pred             CeEEEEcccHHHHHHHHHHHh------CCCEEEEEeCCHH
Confidence            469999999999999999998      7899999998754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.24  E-value=0.0071  Score=44.29  Aligned_cols=35  Identities=29%  Similarity=0.295  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...|+|+|+|.+|+.++..+..      .|.+|+++|+.+.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~------~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKR------LGAVVMATDVRAA  206 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCHH
Confidence            3579999999999999998887      7899999998764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.22  E-value=0.0072  Score=43.89  Aligned_cols=33  Identities=30%  Similarity=0.370  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|+|+|.+|..++..|..      .|.+|+++++.+
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~------~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVG------LGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCEEEEEeCCH
Confidence            579999999999999999988      789999999875

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.007  Score=45.89  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...|.|||.|..|...|..|++      +|++|++++|.+.
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~------~G~~V~v~dr~~~   44 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAAD------HGFTVCAYNRTQS   44 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHH------CCCEEEEEeCCHH
Confidence            4579999999999999999999      8999999998763

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.20  E-value=0.0086  Score=40.46  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=30.4

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|.|| |..|..++..|.+      .|.+|+++.|.+.
T Consensus        22 ~~ilVtGatG~iG~~l~~~L~~------~G~~V~~~~R~~~   56 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKN------KGHEPVAMVRNEE   56 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH------TTCEEEEEESSGG
T ss_pred             CeEEEECCCChHHHHHHHHHHh------CCCeEEEEECChH
Confidence            35999998 9999999999999      8999999998754

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.19  E-value=0.0089  Score=42.43  Aligned_cols=32  Identities=31%  Similarity=0.511  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      .|+|||+|-.|..+|..|+.      .|. +|+++|...
T Consensus         4 kI~VIGaG~vG~~~a~~la~------~g~~~v~L~Di~~   36 (309)
T 1ur5_A            4 KISIIGAGFVGSTTAHWLAA------KELGDIVLLDIVE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHH------CCCCeEEEEeCCc
Confidence            69999999999999999998      776 899999764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.19  E-value=0.0064  Score=45.64  Aligned_cols=41  Identities=20%  Similarity=0.303  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhh--------------cCCCc-eEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEK--------------DGKEL-KVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~--------------~~~g~-~v~vlE~~~~~   63 (182)
                      ..++|||+|.+|+-+|..|++..++              +..|. +|+|++|....
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            4799999999999999999820000              00576 79999987643

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.18  E-value=0.0065  Score=43.76  Aligned_cols=33  Identities=21%  Similarity=0.174  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|.|||.|..|.+.|..|.+      .|.+|+++++++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~------~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHA------ANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH------TTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHH------CCCEEEEEeCCH
Confidence            369999999999999999999      899999999885

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.15  E-value=0.0052  Score=46.37  Aligned_cols=36  Identities=17%  Similarity=0.336  Sum_probs=31.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+.+|.|||.|..|...|..|++      .|.+|++++|.+.
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~------~G~~V~v~~r~~~   49 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIES------RGYTVSIFNRSRE   49 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHT------TTCCEEEECSSHH
T ss_pred             CCCeEEEEccHHHHHHHHHHHHh------CCCeEEEEeCCHH
Confidence            34579999999999999999999      8999999998753

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.14  E-value=0.0066  Score=44.23  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=30.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKA   60 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~   60 (182)
                      .+..|+|+|+|.+|..+|..|..      .|. +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~------~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLD------LGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH------HTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHh------CCCCeEEEEECC
Confidence            34689999999999999999988      677 89999997

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.13  E-value=0.0055  Score=43.77  Aligned_cols=30  Identities=27%  Similarity=0.329  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEec
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK   59 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~   59 (182)
                      .|.|||+|..|...|..|++      .|.+|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~------~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVD------NGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHH------HCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHh------CCCeEEEEEc
Confidence            48999999999999999998      7899999998

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.12  E-value=0.0081  Score=42.88  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCC----ceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKE----LKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g----~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|.+.|..|.+      .|    .+|++++|.+.
T Consensus        23 mkI~iIG~G~mG~ala~~L~~------~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTA------AGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHH------TTSSCGGGEEEECSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHH------CCCCCcceEEEECCCcc
Confidence            369999999999999999998      78    79999998753

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=96.11  E-value=0.01  Score=43.01  Aligned_cols=34  Identities=35%  Similarity=0.539  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .|+|+|||..|..+++.+.+      .|++|+++|.++..
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~------~G~~vv~vd~~~~~   36 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKK------AGMKVVLVDKNPQA   36 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCEEEEEESCTTC
T ss_pred             EEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCCCC
Confidence            49999999999999999988      89999999987653

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.11  E-value=0.0095  Score=39.90  Aligned_cols=33  Identities=27%  Similarity=0.336  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|.|||+|..|...|..|++      .|.+|++++|++
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~------~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVG------SGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH------TTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHH------CCCEEEEEeCCH
Confidence            369999999999999999998      789999999875

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.10  E-value=0.0059  Score=42.98  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|.|||+|..|...|..|++      .|.+|+++++.+
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~------~g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLK------EGVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHH------TTCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHH------CCCeEEEEeCCH
Confidence            369999999999999999998      789999999875

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.08  E-value=0.0049  Score=42.97  Aligned_cols=33  Identities=9%  Similarity=0.219  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||+|.+|+-+|..|++      .| +|+++++.+.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~------~g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPD------WG-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGG------TS-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhh------cC-cEEEEECCCC
Confidence            479999999999999999998      78 9999998764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.08  E-value=0.005  Score=43.15  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||.|..|...|..|++      .|++|+++++++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~------~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVR------AGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHH------HTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHH------CCCeEEEEcCCHH
Confidence            59999999999999999999      7899999999865

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.06  E-value=0.0099  Score=42.66  Aligned_cols=35  Identities=20%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ...|+|||+|-.|+.+|..|++      .|. +++++|.+..
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~------aGVg~ItlvD~D~V   69 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIA------WGVRKITFVDNGTV   69 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------TTCCEEEEECCCBC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------cCCCEEEEecCCEe
Confidence            4679999999999999999999      786 7999998763

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.06  E-value=0.0068  Score=43.23  Aligned_cols=32  Identities=28%  Similarity=0.427  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      .|.|||+|-.|.++|..|++      .|.  +|+++|+.+
T Consensus         2 kI~VIGaG~~G~~la~~l~~------~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLM------KGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------HTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCCCeEEEEeCCh
Confidence            48999999999999999998      677  999999874

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.05  E-value=0.006  Score=45.91  Aligned_cols=32  Identities=19%  Similarity=0.388  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCC--CceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGK--ELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~--g~~v~vlE~~~   61 (182)
                      .|.|||.|..|+..|..|++      .  |.+|+++|+++
T Consensus         7 kI~VIG~G~mG~~lA~~La~------~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            7 KICCIGAGYVGGPTCSVIAH------MCPEIRVTVVDVNE   40 (467)
T ss_dssp             EEEEECCSTTHHHHHHHHHH------HCTTSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHh------cCCCCEEEEEECCH
Confidence            69999999999999999998      5  79999999875

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.05  E-value=0.011  Score=40.98  Aligned_cols=34  Identities=26%  Similarity=0.521  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||+|-+|.+++..|++      .|.+|+|+.|...
T Consensus       119 k~vlvlGaGGaaraia~~L~~------~G~~v~V~nRt~~  152 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKK------QGLQVSVLNRSSR  152 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCHH
Confidence            469999999999999999999      7899999998864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.01  E-value=0.011  Score=41.16  Aligned_cols=33  Identities=15%  Similarity=0.351  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|+|+|.+|.++|..|++      .|.+|++++|..
T Consensus       120 k~vlViGaGg~g~a~a~~L~~------~G~~V~v~~R~~  152 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLS------LDCAVTITNRTV  152 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHH------cCCEEEEEECCH
Confidence            469999999999999999999      889999998874

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.01  E-value=0.01  Score=43.21  Aligned_cols=33  Identities=33%  Similarity=0.432  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|+|+|..|..+|..|..      .|.+|+++++++
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~------~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALG------MGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCEEEEEECCH
Confidence            469999999999999999988      899999999875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.01  E-value=0.0082  Score=42.77  Aligned_cols=33  Identities=15%  Similarity=0.196  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~   61 (182)
                      ..|.|||.|..|...|..|++      .| .+|+++++.+
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~------~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGG------RNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT------TTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHH------cCCCeEEEEeCCC
Confidence            369999999999999999999      89 9999999986

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=96.01  E-value=0.0072  Score=47.99  Aligned_cols=34  Identities=32%  Similarity=0.410  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|..+|..|++      .|++|+++|+++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~------aG~~V~l~D~~~~  346 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALIL------SNYPVILKEVNEK  346 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHT------TTCCEEEECSSHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHh------CCCEEEEEECCHH
Confidence            369999999999999999999      8999999998753

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.00  E-value=0.0064  Score=43.06  Aligned_cols=30  Identities=20%  Similarity=0.319  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCC-----C-ceEEEEec
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGK-----E-LKVCLVEK   59 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~-----g-~~v~vlE~   59 (182)
                      .|.|||+|..|...|..|++      .     | .+|++++|
T Consensus        10 ~I~iiG~G~mG~~~a~~L~~------~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A           10 KIAVFGLGGVGGYYGAMLAL------RAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------HHHHTTSSEEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHh------CccccCCCCCEEEEEc
Confidence            59999999999999999998      7     8 89999988

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.00  E-value=0.0056  Score=44.17  Aligned_cols=33  Identities=27%  Similarity=0.270  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC-------ceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-------LKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-------~~v~vlE~~~~   62 (182)
                      .|.|||+|..|.+.|..|++      .|       .+|+++++++.
T Consensus        10 kI~iIG~G~mG~~~a~~l~~------~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A           10 KVCIVGSGNWGSAIAKIVGG------NAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------HHHHCTTEEEEEEEECCCCB
T ss_pred             eEEEECCCHHHHHHHHHHHh------cCCcccCCCCeEEEEEcChh
Confidence            69999999999999999998      67       89999998765

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=95.99  E-value=0.011  Score=44.65  Aligned_cols=34  Identities=18%  Similarity=0.449  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+|.|||.|..|...|..|++      .|++|+++++.+.
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~------~G~~V~v~dr~~~   38 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMND------HGFVVCAFNRTVS   38 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSTH
T ss_pred             CEEEEEChhHHHHHHHHHHHH------CCCEEEEEeCCHH
Confidence            369999999999999999999      8999999999864

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.98  E-value=0.0098  Score=42.33  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ..|.|||.|..|.+.|..|.+      .|.  +|+++++.+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~------~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRR------SGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHH------TTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHh------CCCCCEEEEEECCH
Confidence            469999999999999999999      788  999999875

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=95.97  E-value=0.0094  Score=41.64  Aligned_cols=54  Identities=17%  Similarity=0.116  Sum_probs=29.1

Q ss_pred             CCcCCCCCCCccccccccccccccEEEECC---ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240           1 MLSFGSSKSDQFDVDMERFEDVADVVIVGG---GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~dv~IIGg---G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      |+++.+..+......|..+ ...-++|.||   |-.|..+|..|++      .|.+|+++.|..
T Consensus         1 m~r~~~~~~~~~~~~m~~l-~~k~vlVTGas~~~gIG~~ia~~l~~------~G~~V~~~~r~~   57 (285)
T 2p91_A            1 MLRKLSKFSNKGEVFMGLL-EGKRALITGVANERSIAYGIAKSFHR------EGAQLAFTYATP   57 (285)
T ss_dssp             ----------------CTT-TTCEEEECCCSSTTSHHHHHHHHHHH------TTCEEEEEESSG
T ss_pred             CcccccccccCCcchhhcc-CCCEEEEECCCCCCcHHHHHHHHHHH------cCCEEEEEeCCH
Confidence            5555555444333322211 1234888897   4779999999999      899999998875

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=95.95  E-value=0.0083  Score=42.62  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~   60 (182)
                      ..|.|||.|..|...|..|++      .|. +|+++++.
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~------~G~~~V~~~dr~   57 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQ------AGAIDMAAYDAA   57 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------HSCCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHH------CCCCeEEEEcCC
Confidence            469999999999999999999      788 99999996

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.93  E-value=0.0099  Score=41.92  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=30.1

Q ss_pred             cEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.||| .|..|.+.|..|++      .|.+|+++++++.
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~------~G~~V~~~~~~~~   56 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRA------SGYPISILDREDW   56 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHT------TTCCEEEECTTCG
T ss_pred             EEEEEcCCCHHHHHHHHHHHh------CCCeEEEEECCcc
Confidence            599999 99999999999998      8999999998753

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.92  E-value=0.012  Score=39.16  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=29.1

Q ss_pred             cEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+||| +|-.|...|..|++      .|.+|++++|.+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~------~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLAT------LGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT------TTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHH------CCCEEEEEeCCH
Confidence            489999 99999999999998      789999999874

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.90  E-value=0.012  Score=40.87  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||+|..|.+.|..|.+      .|.+|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~------~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRR------RGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            48999999999999999998      789999999875

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.89  E-value=0.014  Score=41.65  Aligned_cols=33  Identities=24%  Similarity=0.477  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ..|+|||+|-.|.++|+.|+.      .++  +++++|...
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~------~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMAL------RQTANELVLIDVFK   42 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH------TTCSSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCCCEEEEEeCCh
Confidence            579999999999999999998      676  899999875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=95.89  E-value=0.0067  Score=44.22  Aligned_cols=33  Identities=15%  Similarity=0.124  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC-------ceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-------LKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-------~~v~vlE~~~~   62 (182)
                      .|.|||+|..|.+.|..|++      .|       .+|+++++.+.
T Consensus        23 kI~iIGaG~mG~alA~~L~~------~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGT------NAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHH------HHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHH------cCCccCCCCCeEEEEECChh
Confidence            59999999999999999998      67       89999998764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.87  E-value=0.013  Score=42.82  Aligned_cols=33  Identities=33%  Similarity=0.442  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|||+|..|..+|..+..      .|.+|+++|+.+
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~------~Ga~V~~~d~~~  201 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANG------MGATVTVLDINI  201 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCEEEEEeCCH
Confidence            469999999999999999988      799999999875

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=95.87  E-value=0.008  Score=47.75  Aligned_cols=34  Identities=26%  Similarity=0.390  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|..+|..+++      .|++|+++|..+.
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~------aG~~V~l~D~~~~  350 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFAR------VGISVVAVESDPK  350 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT------TTCEEEEECSSHH
T ss_pred             cEEEEEcccHHHHHHHHHHHh------CCCchhcccchHh
Confidence            479999999999999999999      8999999998753

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.86  E-value=0.012  Score=42.02  Aligned_cols=33  Identities=21%  Similarity=0.176  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHH-HHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMA-AAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~-~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||.|.+|++ +|..|.+      .|.+|++.|+...
T Consensus         6 ~i~~iGiGg~Gms~~A~~L~~------~G~~V~~~D~~~~   39 (326)
T 3eag_A            6 HIHIIGIGGTFMGGLAAIAKE------AGFEVSGCDAKMY   39 (326)
T ss_dssp             EEEEESCCSHHHHHHHHHHHH------TTCEEEEEESSCC
T ss_pred             EEEEEEECHHHHHHHHHHHHh------CCCEEEEEcCCCC
Confidence            5999999999997 7888888      8999999998753

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=95.86  E-value=0.012  Score=43.28  Aligned_cols=39  Identities=18%  Similarity=0.301  Sum_probs=31.7

Q ss_pred             cccccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        16 ~~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++.|++...|+|+|+|..|..++..+.+      .|++|++++ .+
T Consensus        18 ~~~mm~~~~I~ilGgG~lg~~l~~aa~~------lG~~v~~~d-~~   56 (403)
T 3k5i_A           18 QGHMWNSRKVGVLGGGQLGRMLVESANR------LNIQVNVLD-AD   56 (403)
T ss_dssp             ---CCSCCEEEEECCSHHHHHHHHHHHH------HTCEEEEEE-ST
T ss_pred             eccCCCCCEEEEECCCHHHHHHHHHHHH------CCCEEEEEE-CC
Confidence            3445555679999999999999999999      799999999 54

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=95.85  E-value=0.012  Score=44.50  Aligned_cols=32  Identities=16%  Similarity=0.450  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|.|||.|..|...|..|++      .|.+|++++|.+
T Consensus         4 ~IgvIG~G~mG~~lA~~La~------~G~~V~v~dr~~   35 (482)
T 2pgd_A            4 DIALIGLAVMGQNLILNMND------HGFVVCAFNRTV   35 (482)
T ss_dssp             SEEEECCSHHHHHHHHHHHH------TTCCEEEECSST
T ss_pred             eEEEEChHHHHHHHHHHHHH------CCCeEEEEeCCH
Confidence            69999999999999999999      899999999875

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.85  E-value=0.0096  Score=42.22  Aligned_cols=32  Identities=22%  Similarity=0.292  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~   61 (182)
                      .|+|||+|-.|.++|..|++      .|  .+|+++|+..
T Consensus         3 kI~VIGaG~~G~~la~~L~~------~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIA------QGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------HTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCCCEEEEEcCCH
Confidence            59999999999999999998      67  6899999874

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=95.85  E-value=0.0088  Score=42.77  Aligned_cols=32  Identities=19%  Similarity=0.385  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|||+|.+|+-+|..|++      .| +|+++++.+
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~------~~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVST------VA-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTT------TS-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHh------hC-CEEEEECCC
Confidence            479999999999999999998      66 799998874

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=95.84  E-value=0.014  Score=40.75  Aligned_cols=34  Identities=15%  Similarity=0.546  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc---eEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL---KVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~---~v~vlE~~~~   62 (182)
                      ..|.|||+|-.|.+.|..|.+      .|+   +|+++++++.
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~------~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIA------NGYDPNRICVTNRSLD   40 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHH------TTCCGGGEEEECSSSH
T ss_pred             CEEEEEcccHHHHHHHHHHHH------CCCCCCeEEEEeCCHH
Confidence            369999999999999999999      787   8999998863

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.83  E-value=0.01  Score=41.85  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      .|.|||+|..|.++|+.|++      .|.  +++++|+.+
T Consensus         2 kI~ViGaG~vG~~la~~l~~------~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLL------NLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------HSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCCCeEEEEECCh
Confidence            48999999999999999998      666  899999875

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.81  E-value=0.025  Score=42.68  Aligned_cols=39  Identities=13%  Similarity=0.160  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe
Q psy2240         131 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT  170 (182)
Q Consensus       131 ~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~  170 (182)
                      ..+.+.|.+.+++.|++|+++++|++|+. +++++++|..
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~-~~~~~~gV~~  259 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMET-TGNKIEAVHL  259 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEE
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEe-eCCeEEEEEe
Confidence            46889999999999999999999999987 4566666554

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.81  E-value=0.012  Score=40.39  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ...|+|||+|-.|..+|..|++      .|+ +++|+|.+.
T Consensus        28 ~~~VlvvG~GglG~~va~~La~------~Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAG------AGVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHH------TTCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHH------cCCCeEEEEeCCC
Confidence            4579999999999999999999      786 899998875

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=95.80  E-value=0.012  Score=40.57  Aligned_cols=34  Identities=15%  Similarity=0.148  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC----ceEEEEecCCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE----LKVCLVEKAAEV   63 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g----~~v~vlE~~~~~   63 (182)
                      .|.|||+|..|.+.|..|++      .|    .+|+++++.+..
T Consensus         6 ~i~iiG~G~mG~~~a~~l~~------~g~~~~~~v~~~~~~~~~   43 (262)
T 2rcy_A            6 KLGFMGLGQMGSALAHGIAN------ANIIKKENLFYYGPSKKN   43 (262)
T ss_dssp             CEEEECCSHHHHHHHHHHHH------HTSSCGGGEEEECSSCCS
T ss_pred             EEEEECcCHHHHHHHHHHHH------CCCCCCCeEEEEeCCccc
Confidence            69999999999999999998      67    689999988653

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=95.80  E-value=0.0097  Score=47.33  Aligned_cols=33  Identities=21%  Similarity=0.126  Sum_probs=30.5

Q ss_pred             ccEEEEC--CChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVG--GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIG--gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|||  ||..|+-+|..|++      .|.+|+++++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~------~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLAT------AGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHH------TTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHH------cCCEEEEEeccc
Confidence            3799999  99999999999999      899999999887

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.80  E-value=0.011  Score=41.95  Aligned_cols=34  Identities=24%  Similarity=0.606  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~~   62 (182)
                      ..|.|||+|..|..+|+.|+.      .|+  +++|+|....
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~------~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISA------KGIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------HTCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHh------cCCCCEEEEEcCCcc
Confidence            469999999999999999988      677  9999998763

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.80  E-value=0.0098  Score=44.19  Aligned_cols=33  Identities=18%  Similarity=0.369  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||.|..|+.+|..|++       |.+|+++|+++.
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-------G~~V~~~D~~~~   69 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-------NHEVVALDIVQA   69 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-------TSEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-------CCeEEEEecCHH
Confidence            369999999999999999875       799999998753

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=95.79  E-value=0.012  Score=41.34  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||.|..|...|..|++      .|.+|+++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~------~g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMK------HGYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHH------TTCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHH------CCCEEEEEeCCHH
Confidence            48999999999999999998      7899999998753

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.78  E-value=0.0047  Score=41.87  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=29.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .-.++|+|+|..|..+|..|.+      .|. |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~------~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRG------SEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTT------SEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHh------CCe-EEEEECCHH
Confidence            3469999999999999999988      788 999998864

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=95.77  E-value=0.0092  Score=47.32  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|..|..+|..|++      .|++|+++|+++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~------aG~~V~l~D~~~~  348 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSAS------KGTPILMKDINEH  348 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHH------TTCCEEEECSSHH
T ss_pred             CEEEEECCChhhHHHHHHHHh------CCCEEEEEECCHH
Confidence            369999999999999999999      8999999998753

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.76  E-value=0.0082  Score=45.34  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||.|..|+..|..|++.    +.|.+|+++|+++
T Consensus        11 kI~VIG~G~vG~~~A~~La~~----g~g~~V~~~D~~~   44 (481)
T 2o3j_A           11 KVVCVGAGYVGGPTCAMIAHK----CPHITVTVVDMNT   44 (481)
T ss_dssp             EEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECCH
Confidence            699999999999999999981    1278999999875

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.75  E-value=0.016  Score=40.40  Aligned_cols=32  Identities=28%  Similarity=0.341  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      .|.|||+|..|.+.|..|++      .|.  +|+++++.+
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~------~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRR------SGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHH------TTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHh------cCCCcEEEEEeCCH
Confidence            49999999999999999998      787  899999875

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.74  E-value=0.013  Score=48.44  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      +|+|||||..|+-+|..|.+      .|. +|+++++.+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~------~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALR------CGARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHH------TTCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHH------cCCCEEEEEEecC
Confidence            79999999999999999999      786 899999876

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=95.74  E-value=0.0087  Score=44.06  Aligned_cols=29  Identities=17%  Similarity=0.319  Sum_probs=26.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCC-CceEEEEe
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGK-ELKVCLVE   58 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~-g~~v~vlE   58 (182)
                      .|.|||+|..|.+.|..|++      . |.+|++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~------~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAAS------RDGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTT------STTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHh------CCCCEEEEEe
Confidence            59999999999999999987      4 89999999

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.73  E-value=0.01  Score=44.17  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ....|||.|-.|+.+|..|++      .|++|+++|+++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~------~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAK------HGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH------TTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHH------CCCEEEEEECCHH
Confidence            468999999999999999999      8999999999864

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.73  E-value=0.013  Score=41.85  Aligned_cols=33  Identities=18%  Similarity=0.413  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ..|.|||+|..|.++|+.|++      .|+  +++++|...
T Consensus         6 ~kI~ViGaG~vG~~~a~~l~~------~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            6 NKVALIGAGFVGSSYAFALIN------QGITDELVVIDVNK   40 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------HTCCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCCceEEEEecch
Confidence            469999999999999999998      566  899999753

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.73  E-value=0.012  Score=44.23  Aligned_cols=33  Identities=30%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|+|+|..|.++|..|+.      .|.+|++.|+.+
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa------~GA~Viv~D~~~  298 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQ------AGARVIVTEIDP  298 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHH------CCCEEEEEcCCH
Confidence            359999999999999999999      899999999875

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=95.72  E-value=0.015  Score=41.47  Aligned_cols=33  Identities=24%  Similarity=0.512  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ..|+|||+|..|.++|+.|+.      .+.  +++++|...
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~------~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMN------QGIADEIVLIDANE   41 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------HTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHh------CCCCCEEEEEeCCc
Confidence            469999999999999999987      454  899999874

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.72  E-value=0.016  Score=43.52  Aligned_cols=32  Identities=25%  Similarity=0.325  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ..|+|||||.+|...+..|.+      .|.+|+|++..
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~------~ga~V~vi~~~   44 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLE------AGARLTVNALT   44 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CcCEEEEEcCC
Confidence            469999999999999999999      89999999975

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=95.71  E-value=0.012  Score=40.46  Aligned_cols=32  Identities=25%  Similarity=0.458  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~   61 (182)
                      .|.|||+|..|...|..|++      .| .+|+++++.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~------~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVK------QGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------HCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHH------CCCCeEEEECCCH
Confidence            48999999999999999998      78 8999999874

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.67  E-value=0.015  Score=40.96  Aligned_cols=33  Identities=9%  Similarity=0.314  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..++|||+|.+|.++|..|.+      .|. +|+++.|..
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~------~G~~~V~v~nR~~  175 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLS------TAAERIDMANRTV  175 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT------TTCSEEEEECSSH
T ss_pred             CEEEEECcHHHHHHHHHHHHH------CCCCEEEEEeCCH
Confidence            369999999999999999998      787 999999874

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.67  E-value=0.015  Score=43.93  Aligned_cols=32  Identities=31%  Similarity=0.490  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|.|||.|..|...|..|++      .|.+|++++|.+
T Consensus         3 kIgVIG~G~mG~~lA~~La~------~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAE------KGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHH------TTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHH------CCCEEEEEeCCH
Confidence            59999999999999999999      899999999875

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.67  E-value=0.02  Score=40.96  Aligned_cols=33  Identities=36%  Similarity=0.561  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ..|.|||+|..|.++|+.|+.      .|+  +++++|...
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~------~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLM------KDLADEVALVDVME   56 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHH------HCCCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCCCeEEEEECCH
Confidence            479999999999999999998      676  899999764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=95.66  E-value=0.017  Score=40.36  Aligned_cols=32  Identities=22%  Similarity=0.403  Sum_probs=29.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||+ |-.|...|..|.+      .|.+|+++++.+
T Consensus        13 ~I~iIG~tG~mG~~la~~l~~------~g~~V~~~~r~~   45 (286)
T 3c24_A           13 TVAILGAGGKMGARITRKIHD------SAHHLAAIEIAP   45 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------SSSEEEEECCSH
T ss_pred             EEEEECCCCHHHHHHHHHHHh------CCCEEEEEECCH
Confidence            5999999 9999999999998      899999999874

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=95.66  E-value=0.029  Score=40.91  Aligned_cols=35  Identities=26%  Similarity=0.422  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...|+|||+|..|.+++..+.+      .|++|++++..+.
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~------lG~~viv~d~~~~   46 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQK------MGYKVVVLDPSED   46 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------CCCEEEEEECCCC
Confidence            3469999999999999999999      8999999998754

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=95.65  E-value=0.017  Score=43.51  Aligned_cols=33  Identities=18%  Similarity=0.343  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .+|.|||.|..|...|..|++      .|.+|++++|.+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~------~G~~V~v~dr~~   38 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVES------RGYTVAIYNRTT   38 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSH
T ss_pred             CcEEEEeeHHHHHHHHHHHHh------CCCEEEEEcCCH
Confidence            479999999999999999999      899999999875

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.65  E-value=0.014  Score=40.99  Aligned_cols=32  Identities=16%  Similarity=0.258  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||+|..|...|..|++      .|.+|+++++.+
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~------~g~~V~~~~~~~   38 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLK------AGYSLVVSDRNP   38 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             eEEEECchHHHHHHHHHHHh------CCCEEEEEeCCH
Confidence            59999999999999999998      789999999875

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.62  E-value=0.014  Score=41.46  Aligned_cols=32  Identities=22%  Similarity=0.487  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      .|.|||+|..|.++|+.|++      .++  +++++|..+
T Consensus         2 kv~ViGaG~vG~~~a~~l~~------~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVAR------QDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------HTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCCCEEEEEeCch
Confidence            48999999999999999998      565  899999875

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.61  E-value=0.026  Score=41.83  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...|+|+|+|..|..++..+.+      .|++|+++|..+.
T Consensus        35 ~~~IlIlG~G~lg~~~~~aa~~------lG~~v~v~d~~~~   69 (419)
T 4e4t_A           35 GAWLGMVGGGQLGRMFCFAAQS------MGYRVAVLDPDPA   69 (419)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------CCCEEEEECCCCc
Confidence            4579999999999999999998      8999999987653

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.57  E-value=0.014  Score=41.08  Aligned_cols=33  Identities=24%  Similarity=0.379  Sum_probs=29.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...|.|||+|..|...|..|+ .      |++|+++|+.+
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-a------G~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-S------KHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-T------TSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-c------CCEEEEEECCH
Confidence            347999999999999999987 3      89999999875

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.56  E-value=0.019  Score=44.26  Aligned_cols=35  Identities=29%  Similarity=0.429  Sum_probs=32.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      -.++|||+|-.|..+|..|.+      .|.+|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~------~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDR------KPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH------TTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHH------CCCCEEEEECChHH
Confidence            479999999999999999999      89999999999754

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=95.56  E-value=0.014  Score=40.63  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|+|+|.+|.++|..|++      .|.+|+++.|..
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~------~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQ------AQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHH------TTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            469999999999999999999      789999999875

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.54  E-value=0.025  Score=40.58  Aligned_cols=34  Identities=35%  Similarity=0.582  Sum_probs=29.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ...|.|||+|..|.++|+.|+.      .|+  +++++|...
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~------~~~~~el~L~Di~~   54 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILM------KDLADELALVDVIE   54 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHH------TTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh------CCCCceEEEEeCCh
Confidence            3479999999999999999998      676  899999763

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.52  E-value=0.025  Score=39.29  Aligned_cols=33  Identities=27%  Similarity=0.448  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|.|+|..|..++..|.+      .|.+|+++.|...
T Consensus         5 ~ilVtGaG~iG~~l~~~L~~------~g~~V~~~~r~~~   37 (286)
T 3gpi_A            5 KILIAGCGDLGLELARRLTA------QGHEVTGLRRSAQ   37 (286)
T ss_dssp             CEEEECCSHHHHHHHHHHHH------TTCCEEEEECTTS
T ss_pred             cEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCcc
Confidence            59999999999999999999      8999999998754

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=95.51  E-value=0.022  Score=40.98  Aligned_cols=33  Identities=30%  Similarity=0.423  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||.|..|.+.|..|.+      .|.+|++.++.+.
T Consensus        18 ~I~IIG~G~mG~alA~~L~~------~G~~V~~~~~~~~   50 (338)
T 1np3_A           18 KVAIIGYGSQGHAHACNLKD------SGVDVTVGLRSGS   50 (338)
T ss_dssp             CEEEECCSHHHHHHHHHHHH------TTCCEEEECCTTC
T ss_pred             EEEEECchHHHHHHHHHHHH------CcCEEEEEECChH
Confidence            59999999999999999998      7899999998753

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=95.50  E-value=0.017  Score=43.27  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhh--------------hcCCC-ceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAE--------------KDGKE-LKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~--------------~~~~g-~~v~vlE~~~~~   63 (182)
                      ..|+|||+|.+|+-+|..|++..+              -+..| .+|+|+++....
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            479999999999999999986100              00014 489999987643

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.50  E-value=0.019  Score=40.72  Aligned_cols=31  Identities=29%  Similarity=0.481  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|||+|..|.+.|..|+.       |.+|++++|++
T Consensus         4 kI~IiGaGa~G~~~a~~L~~-------g~~V~~~~r~~   34 (307)
T 3ego_A            4 KIGIIGGGSVGLLCAYYLSL-------YHDVTVVTRRQ   34 (307)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-------TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhc-------CCceEEEECCH
Confidence            59999999999999999973       78999999875

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=95.49  E-value=0.018  Score=39.37  Aligned_cols=33  Identities=18%  Similarity=0.314  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc----eEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL----KVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~----~v~vlE~~~~   62 (182)
                      .|.|||.|..|.+.|..|.+      .|+    +|+++++++.
T Consensus         4 ~i~iIG~G~mG~~~a~~l~~------~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            4 QIGFIGCGNMGMAMIGGMIN------KNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CEEEECCSHHHHHHHHHHHH------TTSSCGGGEEEECSCHH
T ss_pred             eEEEECccHHHHHHHHHHHh------CCCCCCCeEEEEeCCHH
Confidence            59999999999999999999      787    9999998753

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.48  E-value=0.023  Score=39.09  Aligned_cols=33  Identities=33%  Similarity=0.459  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      .++|||+|-+|.+++..|.+      .|. +|++++|.+.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~------~G~~~I~v~nR~~~  143 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQ------MGVKDIWVVNRTIE  143 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHH------TTCCCEEEEESCHH
T ss_pred             eEEEECcHHHHHHHHHHHHH------cCCCEEEEEeCCHH
Confidence            79999999999999999999      788 8999998753

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.47  E-value=0.017  Score=41.75  Aligned_cols=35  Identities=26%  Similarity=0.419  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ...|+|||+|..|..+|..|++      .|. +++|+|.+..
T Consensus       118 ~~~VlvvG~GglGs~va~~La~------aGvg~i~lvD~D~V  153 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILAT------SGIGEIILIDNDQI  153 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------HTCSEEEEEECCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHh------CCCCeEEEECCCcC
Confidence            4579999999999999999999      676 8999998753

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.46  E-value=0.0075  Score=49.47  Aligned_cols=35  Identities=9%  Similarity=0.153  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ..++|||+|..|+-+|..|++      .|.+|+|+|+.+..
T Consensus       285 k~vvViGgG~~g~E~A~~L~~------~G~~Vtvv~~~~~~  319 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAA------TGGVVAVIDARSSI  319 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGG------GTCCSEEEESCSSC
T ss_pred             CeEEEEcCCHHHHHHHHHHHH------cCCcEEEEECCCcc
Confidence            479999999999999999998      78999999998754

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.46  E-value=0.021  Score=44.10  Aligned_cols=35  Identities=20%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ...|+|||+|-.|+.+|..|++      .|+ +++|+|.+..
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~------aGVG~ItLvD~D~V  361 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIA------WGVRKITFVDNGTV  361 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------TTCCEEEEECCCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHH------cCCCEEEEEcCCCC
Confidence            4579999999999999999999      786 8999998763

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.41  E-value=0.018  Score=40.11  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|||+|.+|.+.|..|.+      .|.+|++++|.+
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~------~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVK------EGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------HTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHH------cCCEEEEEECCH
Confidence            469999999999999999998      678999999875

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.38  E-value=0.027  Score=39.74  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..+.|||+|..|..+|..|..      .|.+|+++++.+
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~------~G~~V~~~d~~~  190 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAA------LGANVKVGARSS  190 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSH
T ss_pred             CEEEEEcccHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            469999999999999999988      799999999875

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.38  E-value=0.023  Score=40.50  Aligned_cols=34  Identities=26%  Similarity=0.478  Sum_probs=29.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ...|+|||+|-.|.++|+.|+.      .++  .+.++|...
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~------~~~~~el~L~Di~~   40 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQ------QGIAEEFVIVDVVK   40 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHH------HTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHc------CCCCCEEEEEeCCc
Confidence            3579999999999999999988      454  899999863

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=95.38  E-value=0.016  Score=40.43  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~   63 (182)
                      ..++|||+|-+|.+++..|.+      .|. +|+++.|....
T Consensus       118 k~vlvlGaGg~g~aia~~L~~------~G~~~v~v~~R~~~~  153 (277)
T 3don_A          118 AYILILGAGGASKGIANELYK------IVRPTLTVANRTMSR  153 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHT------TCCSCCEEECSCGGG
T ss_pred             CEEEEECCcHHHHHHHHHHHH------CCCCEEEEEeCCHHH
Confidence            469999999999999999999      888 89999988643

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=95.37  E-value=0.034  Score=41.92  Aligned_cols=40  Identities=15%  Similarity=0.243  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe
Q psy2240         131 GHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT  170 (182)
Q Consensus       131 ~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~  170 (182)
                      ..+.+.|.+.+++.|++|+++++|++|..++++.+.+|.+
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~  295 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKS  295 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEE
Confidence            4789999999999999999999999998756677776655

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=95.37  E-value=0.054  Score=40.24  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHcCcEEecCCccceeE
Q psy2240         134 VKWLGEQAEAMGVEIYPGIPASEVL  158 (182)
Q Consensus       134 ~~~l~~~~~~~gv~i~~~~~v~~i~  158 (182)
                      ...+.+.+++.|++++.+++|++++
T Consensus       211 ~~~~~~~l~~~gI~~~~~~~v~~v~  235 (437)
T 3sx6_A          211 KGILTKGLKEEGIEAYTNCKVTKVE  235 (437)
T ss_dssp             HHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEE
Confidence            3455566677899999999999885

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.35  E-value=0.028  Score=39.96  Aligned_cols=32  Identities=19%  Similarity=0.381  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~   60 (182)
                      ..++|+|+|-+|.++|..|++      .|. +|+|+.|.
T Consensus       155 k~~lVlGaGG~g~aia~~L~~------~Ga~~V~i~nR~  187 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAAL------DGVKEISIFNRK  187 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCSEEEEEECS
T ss_pred             CEEEEECCChHHHHHHHHHHH------CCCCEEEEEECC
Confidence            469999999999999999999      898 89999987

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.35  E-value=0.021  Score=40.63  Aligned_cols=33  Identities=21%  Similarity=0.521  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ..|+|||+|-.|.++|+.|+.      .++  .+.++|...
T Consensus         7 ~KI~IIGaG~vG~~la~~l~~------~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            7 NKVVLIGNGAVGSSYAFSLVN------QSIVDELVIIDLDT   41 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------HCSCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCCCEEEEEeCCh
Confidence            479999999999999999988      554  899998753

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.35  E-value=0.028  Score=39.51  Aligned_cols=33  Identities=27%  Similarity=0.397  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..+.|||.|..|..+|..|..      .|.+|+++++.+
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~------~G~~V~~~dr~~  188 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAA------LGAKVKVGARES  188 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSH
T ss_pred             CEEEEEeeCHHHHHHHHHHHh------CCCEEEEEECCH
Confidence            469999999999999999988      799999999875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.35  E-value=0.028  Score=39.39  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..++|+|+|-+|.+++..|++      .|. +|+|+.|..
T Consensus       128 k~vlVlGaGG~g~aia~~L~~------~G~~~v~i~~R~~  161 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVT------HGVQKLQVADLDT  161 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCSEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHH------CCCCEEEEEECCH
Confidence            469999999999999999999      788 799998875

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=95.33  E-value=0.017  Score=40.80  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      .|-+||-|..|...|..|.+      .|++|++++|.+...
T Consensus         7 kIgfIGLG~MG~~mA~~L~~------~G~~V~v~dr~~~~~   41 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLE------AGYELVVWNRTASKA   41 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHH------TTCEEEEC-------
T ss_pred             cEEEEecHHHHHHHHHHHHH------CCCeEEEEeCCHHHH
Confidence            59999999999999999999      899999999987543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=95.31  E-value=0.021  Score=43.22  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|||.|..|..+|..|..      .|.+|+++|+++.
T Consensus       275 ktV~IiG~G~IG~~~A~~lka------~Ga~Viv~d~~~~  308 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKG------QGARVSVTEIDPI  308 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHHH------CCCEEEEEeCCHH
Confidence            469999999999999999987      7999999998753

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.31  E-value=0.02  Score=40.95  Aligned_cols=33  Identities=21%  Similarity=0.418  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ..|+|||+|..|.++|+.|+.      .|+  ++.++|...
T Consensus        10 ~kV~ViGaG~vG~~~a~~l~~------~~~~~el~l~D~~~   44 (326)
T 3vku_A           10 QKVILVGDGAVGSSYAYAMVL------QGIAQEIGIVDIFK   44 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------HTCCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh------CCCCCeEEEEeCCh
Confidence            369999999999999999998      566  899999753

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.30  E-value=0.023  Score=43.87  Aligned_cols=34  Identities=21%  Similarity=0.374  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ...|+|||+|-.|+.+|..|++      .|+ +++|+|.+.
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~------aGVG~ItLvD~D~  361 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIA------WGVRKITFVDNGT  361 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHT------TTCCEEEEECCSB
T ss_pred             CCeEEEECCCHHHHHHHHHHHH------cCCCEEEEECCCc
Confidence            3579999999999999999999      787 899998775

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.28  E-value=0.035  Score=36.82  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=29.0

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|.|| |..|..++..|.+      .|.+|+++.|.+
T Consensus         2 kvlVtGatG~iG~~l~~~L~~------~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKN------RGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHh------CCCEEEEEEcCc
Confidence            3899996 9999999999999      899999999875

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.26  E-value=0.023  Score=42.06  Aligned_cols=33  Identities=27%  Similarity=0.318  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|||.|..|..+|..|..      .|.+|++.|+++
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra------~Ga~Viv~D~dp  253 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKA------MGSIVYVTEIDP  253 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHH------CCCEEEEEeCCh
Confidence            469999999999999999987      799999999875

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.26  E-value=0.031  Score=40.27  Aligned_cols=33  Identities=30%  Similarity=0.448  Sum_probs=28.4

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          23 ADVVIVGG-GPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ..|+|||+ |-.|.++|+.++.      .|.  +++++|...
T Consensus         9 ~KV~ViGaaG~VG~~~a~~l~~------~g~~~evvLiDi~~   44 (343)
T 3fi9_A            9 EKLTIVGAAGMIGSNMAQTAAM------MRLTPNLCLYDPFA   44 (343)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHH------TTCCSCEEEECSCH
T ss_pred             CEEEEECCCChHHHHHHHHHHh------cCCCCEEEEEeCCc
Confidence            46999997 9999999999988      664  899999763

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=95.25  E-value=0.0053  Score=41.63  Aligned_cols=31  Identities=19%  Similarity=0.207  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      .|.|||.|..|.+.|..|.+      .|++|+.+++.
T Consensus         8 kI~IIG~G~~G~sLA~~L~~------~G~~V~~~~~~   38 (232)
T 3dfu_A            8 RVGIFDDGSSTVNMAEKLDS------VGHYVTVLHAP   38 (232)
T ss_dssp             EEEEECCSCCCSCHHHHHHH------TTCEEEECSSG
T ss_pred             EEEEEeeCHHHHHHHHHHHH------CCCEEEEecCH
Confidence            59999999999999999999      89999999875

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=95.25  E-value=0.025  Score=39.07  Aligned_cols=32  Identities=22%  Similarity=0.388  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~   61 (182)
                      .|.|||+|-.|...|..|++      .|.+ |.++++.+
T Consensus        12 ~i~iiG~G~mG~~~a~~l~~------~g~~~v~~~~~~~   44 (266)
T 3d1l_A           12 PIVLIGAGNLATNLAKALYR------KGFRIVQVYSRTE   44 (266)
T ss_dssp             CEEEECCSHHHHHHHHHHHH------HTCCEEEEECSSH
T ss_pred             eEEEEcCCHHHHHHHHHHHH------CCCeEEEEEeCCH
Confidence            69999999999999999998      6888 89999875

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.23  E-value=0.032  Score=39.93  Aligned_cols=35  Identities=17%  Similarity=0.216  Sum_probs=30.7

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ..|+|.|| |..|..++..|.+      .|.+|+++.|.+..
T Consensus        20 ~~vlVtGatG~iG~~l~~~L~~------~G~~V~~~~r~~~~   55 (347)
T 4id9_A           20 HMILVTGSAGRVGRAVVAALRT------QGRTVRGFDLRPSG   55 (347)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHH------TTCCEEEEESSCCS
T ss_pred             CEEEEECCCChHHHHHHHHHHh------CCCEEEEEeCCCCC
Confidence            46999998 9999999999999      89999999988643

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.22  E-value=0.024  Score=40.26  Aligned_cols=32  Identities=28%  Similarity=0.540  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      .|.|||+|..|.++|+.|+.      .++ .+.++|...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~------~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMM------RGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHH------HTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHh------CCCCEEEEEcCCh
Confidence            48999999999999999988      566 699999875

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=95.21  E-value=0.042  Score=40.18  Aligned_cols=34  Identities=24%  Similarity=0.473  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|||+|..|..++..+.+      .|++|++++..+.
T Consensus        15 k~IlIlG~G~~g~~la~aa~~------~G~~vi~~d~~~~   48 (389)
T 3q2o_A           15 KTIGIIGGGQLGRMMALAAKE------MGYKIAVLDPTKN   48 (389)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHH------cCCEEEEEeCCCC
Confidence            469999999999999999998      8999999997753

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.17  E-value=0.023  Score=40.48  Aligned_cols=32  Identities=16%  Similarity=0.188  Sum_probs=28.4

Q ss_pred             ccEEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ..++|||+| +.|..+|..|..      .|.+|++++|.
T Consensus       178 k~vvVIG~G~iVG~~~A~~L~~------~gAtVtv~nR~  210 (320)
T 1edz_A          178 KKCIVINRSEIVGRPLAALLAN------DGATVYSVDVN  210 (320)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHT------TSCEEEEECSS
T ss_pred             CEEEEECCCcchHHHHHHHHHH------CCCEEEEEeCc
Confidence            479999999 679999999998      78999999775

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=95.16  E-value=0.024  Score=40.91  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ...|+|||+|..|+.+|..|++      .|+ +++|+|.+..
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~------~Gvg~itlvD~d~V   71 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLIL------AGVKGLTMLDHEQV   71 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------HTCSEEEEECCCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHH------cCCCEEEEEECCCc
Confidence            4689999999999999999999      787 8999987753

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=95.16  E-value=0.029  Score=39.29  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..++|+|+|-+|.+++..|.+      .|. +|+|+.|..
T Consensus       123 k~vlvlGaGGaaraia~~L~~------~G~~~v~v~nRt~  156 (282)
T 3fbt_A          123 NICVVLGSGGAARAVLQYLKD------NFAKDIYVVTRNP  156 (282)
T ss_dssp             SEEEEECSSTTHHHHHHHHHH------TTCSEEEEEESCH
T ss_pred             CEEEEECCcHHHHHHHHHHHH------cCCCEEEEEeCCH
Confidence            479999999999999999999      788 899998875

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=95.15  E-value=0.021  Score=40.08  Aligned_cols=32  Identities=25%  Similarity=0.494  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|+|+|-.|.++|..|++      .| +|++++|..
T Consensus       129 k~vlV~GaGgiG~aia~~L~~------~G-~V~v~~r~~  160 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAK------DN-NIIIANRTV  160 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTS------SS-EEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHH------CC-CEEEEECCH
Confidence            359999999999999999998      89 999998864

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.13  E-value=0.033  Score=38.46  Aligned_cols=32  Identities=28%  Similarity=0.514  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .++|||+|..|.+.|..|.+      .|.+|++++|.+
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~------~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALRE------AGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHH------TTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            79999999999999999998      788999999874

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=95.12  E-value=0.026  Score=38.91  Aligned_cols=30  Identities=23%  Similarity=0.302  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEec
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK   59 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~   59 (182)
                      .|.|||.|..|...|..|++      .|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~------~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRS------RGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHH------TTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHH------CCCeEEEeCC
Confidence            48999999999999999999      8999999876

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.08  E-value=0.038  Score=38.46  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..++|+|+|-+|.+++..|++      .|. +|+++.|..
T Consensus       121 k~~lvlGaGg~~~aia~~L~~------~G~~~v~i~~R~~  154 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQ------AGPSELVIANRDM  154 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TCCSEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHH------cCCCEEEEEeCCH
Confidence            469999999999999999999      896 999998875

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.08  E-value=0.045  Score=35.79  Aligned_cols=33  Identities=18%  Similarity=0.406  Sum_probs=29.9

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|.|| |..|..++..|.+      .|.+|+++.|.+.
T Consensus         5 ~ilVtGatG~iG~~l~~~l~~------~g~~V~~~~r~~~   38 (206)
T 1hdo_A            5 KIAIFGATGQTGLTTLAQAVQ------AGYEVTVLVRDSS   38 (206)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH------TTCEEEEEESCGG
T ss_pred             EEEEEcCCcHHHHHHHHHHHH------CCCeEEEEEeChh
Confidence            5999998 9999999999999      8999999998754

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.08  E-value=0.05  Score=37.44  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=28.7

Q ss_pred             ccEEEECC-C-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGG-G-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGg-G-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .-++|.|| | -.|..+|..|++      .|.+|++++|..
T Consensus        23 k~vlITGasg~GIG~~~a~~l~~------~G~~V~~~~r~~   57 (266)
T 3o38_A           23 KVVLVTAAAGTGIGSTTARRALL------EGADVVISDYHE   57 (266)
T ss_dssp             CEEEESSCSSSSHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             CEEEEECCCCCchHHHHHHHHHH------CCCEEEEecCCH
Confidence            35899998 6 489999999999      899999998874

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=95.05  E-value=0.033  Score=41.44  Aligned_cols=35  Identities=17%  Similarity=0.407  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ....|+|||+|-.|+.+|..|++      .|+ +++|+|.+.
T Consensus        39 ~~~~VlvvG~GGlGs~va~~La~------aGvg~i~ivD~D~   74 (434)
T 1tt5_B           39 DTCKVLVIGAGGLGCELLKNLAL------SGFRQIHVIDMDT   74 (434)
T ss_dssp             HTCCEEEECSSTHHHHHHHHHHH------TTCCCEEEEECCB
T ss_pred             cCCEEEEECcCHHHHHHHHHHHH------cCCCEEEEEcCCE
Confidence            35689999999999999999999      787 899998764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=95.04  E-value=0.03  Score=39.12  Aligned_cols=34  Identities=21%  Similarity=0.285  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||+|..|.+.|..|++.    +.+.+|+++++++
T Consensus         8 ~I~iIG~G~mG~~~a~~l~~~----g~~~~V~~~d~~~   41 (290)
T 3b1f_A            8 TIYIAGLGLIGASLALGIKRD----HPHYKIVGYNRSD   41 (290)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH----CTTSEEEEECSSH
T ss_pred             eEEEEeeCHHHHHHHHHHHhC----CCCcEEEEEcCCH
Confidence            599999999999999999881    1267999999874

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=94.99  E-value=0.028  Score=37.54  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=29.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|.|| |..|..++..|.+      .|.+|+++.|.+.
T Consensus         6 ~ilItGatG~iG~~l~~~L~~------~g~~V~~~~r~~~   39 (227)
T 3dhn_A            6 KIVLIGASGFVGSALLNEALN------RGFEVTAVVRHPE   39 (227)
T ss_dssp             EEEEETCCHHHHHHHHHHHHT------TTCEEEEECSCGG
T ss_pred             EEEEEcCCchHHHHHHHHHHH------CCCEEEEEEcCcc
Confidence            5999995 9999999999999      8999999999864

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.98  E-value=0.024  Score=41.80  Aligned_cols=31  Identities=19%  Similarity=0.425  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||.|..|+..|..|++       |.+|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-------G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-------QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-------TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-------CCEEEEEECCH
Confidence            48999999999999999985       68999999875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.98  E-value=0.028  Score=39.04  Aligned_cols=33  Identities=9%  Similarity=0.167  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|.|+|..|..++..|.+      .|.+|+++.|.+.
T Consensus         7 ~ilVtGaG~iG~~l~~~L~~------~g~~V~~~~r~~~   39 (286)
T 3ius_A            7 TLLSFGHGYTARVLSRALAP------QGWRIIGTSRNPD   39 (286)
T ss_dssp             EEEEETCCHHHHHHHHHHGG------GTCEEEEEESCGG
T ss_pred             cEEEECCcHHHHHHHHHHHH------CCCEEEEEEcChh
Confidence            59999999999999999998      7999999998753

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=94.97  E-value=0.039  Score=38.62  Aligned_cols=33  Identities=15%  Similarity=0.335  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..++|+|+|-+|.+++..|++      .|. +|+++.|.+
T Consensus       127 k~vlvlGaGg~g~aia~~L~~------~G~~~v~v~~R~~  160 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLD------QQPASITVTNRTF  160 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT------TCCSEEEEEESSH
T ss_pred             CEEEEECchHHHHHHHHHHHh------cCCCeEEEEECCH
Confidence            469999999999999999998      896 999998875

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=94.97  E-value=0.046  Score=36.40  Aligned_cols=31  Identities=23%  Similarity=0.419  Sum_probs=28.8

Q ss_pred             EEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      |+|.|| |..|..++..|.+      .|.+|+++.|.+
T Consensus         3 ilVtGatG~iG~~l~~~L~~------~g~~V~~~~R~~   34 (224)
T 3h2s_A            3 IAVLGATGRAGSAIVAEARR------RGHEVLAVVRDP   34 (224)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEEcCCCHHHHHHHHHHHH------CCCEEEEEEecc
Confidence            899998 9999999999999      899999999875

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=94.96  E-value=0.043  Score=39.01  Aligned_cols=32  Identities=19%  Similarity=0.365  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~   60 (182)
                      ..++|+|+|-+|.+++..|++      .|. +|+|+.|.
T Consensus       149 k~~lVlGAGGaaraia~~L~~------~G~~~v~v~nRt  181 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAI------EGIKEIKLFNRK  181 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCSEEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHH------cCCCEEEEEECC
Confidence            469999999999999999999      888 89999887

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=94.88  E-value=0.048  Score=39.12  Aligned_cols=34  Identities=24%  Similarity=0.340  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||.|-.|..+|..|+.      .|.+|+++++.+.
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~------~G~~V~~~d~~~~  184 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKG------FNMRILYYSRTRK  184 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSCC
T ss_pred             CEEEEEccCHHHHHHHHHHHh------CCCEEEEECCCcc
Confidence            369999999999999999998      8999999998764

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=94.85  E-value=0.046  Score=38.48  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=30.2

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|.|| |..|..++..|.+      .|.+|+++.|.+.
T Consensus         9 ~vlVtGatG~iG~~l~~~L~~------~g~~V~~~~r~~~   42 (321)
T 3vps_A            9 RILITGGAGFIGGHLARALVA------SGEEVTVLDDLRV   42 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTCCEEEECCCSS
T ss_pred             eEEEECCCChHHHHHHHHHHH------CCCEEEEEecCCc
Confidence            5999999 9999999999999      8999999998764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=94.84  E-value=0.049  Score=38.10  Aligned_cols=33  Identities=27%  Similarity=0.442  Sum_probs=29.6

Q ss_pred             ccEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|+| +|.+|.++|..|++      .|.+|+++.|..
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~------~G~~V~i~~R~~  153 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAG------EGAEVVLCGRKL  153 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHH------TTCEEEEEESSH
T ss_pred             CEEEEECCCcHHHHHHHHHHHH------CcCEEEEEECCH
Confidence            4699999 89999999999999      899999998864

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=94.83  E-value=0.029  Score=42.97  Aligned_cols=34  Identities=12%  Similarity=0.417  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|||+|.+|+-+|..|++      .+.+|++++|.+.
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~------~~~~vtv~~r~~~  220 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAK------QAAELFVFQRTPH  220 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------HBSEEEEEESSCC
T ss_pred             CEEEEECCCccHHHHHHHHhh------cCceEEEEEcCCc
Confidence            479999999999999999998      6889999998764

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.81  E-value=0.037  Score=39.38  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=28.3

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCC--ceEEEEecCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~   61 (182)
                      .|+|||+ |-.|.+++..|++      .+  .++.++|..+
T Consensus         2 KI~IiGa~G~VG~~la~~L~~------~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKN------SPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHT------CTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHh------CCCCcEEEEEeCCc
Confidence            5899998 9999999999998      66  5899999875

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=94.79  E-value=0.047  Score=39.67  Aligned_cols=33  Identities=18%  Similarity=0.234  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|+|.|-.|..+|..|.+      .|.+|++.|+.+
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~------~GakVvv~D~~~  206 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNT------EGAKLVVTDVNK  206 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             CEEEEECchHHHHHHHHHHHH------CCCEEEEEcCCH
Confidence            469999999999999999999      899999998764

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=94.77  E-value=0.034  Score=41.01  Aligned_cols=33  Identities=24%  Similarity=0.426  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..|+|||+|..|..++..|..      .|. +|+++++.+
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~------~G~~~V~v~~r~~  201 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVD------RGVRAVLVANRTY  201 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH------HCCSEEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHH------CCCCEEEEEeCCH
Confidence            469999999999999999988      688 899999875

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=94.74  E-value=0.04  Score=38.35  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..++|||+|-+|.+++..|.+      .|. +|+|+.|..
T Consensus       120 ~~vlvlGaGgaarav~~~L~~------~G~~~i~v~nRt~  153 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKN------SGFEKLKIYARNV  153 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHH------TTCCCEEEECSCH
T ss_pred             CEEEEECCcHHHHHHHHHHHH------CCCCEEEEEeCCH
Confidence            469999999999999999999      786 799998874

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=94.70  E-value=0.027  Score=39.44  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||.|..|...|..|++      .|.+|++++ ++.
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~------~g~~V~~~~-~~~   36 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLAR------AGHQLHVTT-IGP   36 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHH------TTCEEEECC-SSC
T ss_pred             EEEEEccCHHHHHHHHHHHh------CCCEEEEEc-CHH
Confidence            59999999999999999998      799999998 653

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=94.69  E-value=0.037  Score=40.55  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=30.6

Q ss_pred             cccEEEECC-ChHHHHHHHHHHHhhhhcCCCc---eEEEEecCC
Q psy2240          22 VADVVIVGG-GPAGMAAAIRLKQLAEKDGKEL---KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~---~v~vlE~~~   61 (182)
                      ...|+|||| |.+|+.++..+..      .|.   +|+++|.+.
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~------lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHK------VGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHH------TTCCGGGEEEECHHH
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHh------CCCCcCceEEeeccc
Confidence            568999999 9999999999888      787   899999976

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=94.67  E-value=0.068  Score=37.38  Aligned_cols=34  Identities=29%  Similarity=0.392  Sum_probs=30.2

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .|+|.|| |..|..++..|.+      .|++|+++-|++..
T Consensus         2 kILVTGatGfIG~~L~~~L~~------~G~~V~~l~R~~~~   36 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNA------RGHEVTLVSRKPGP   36 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHH------CCCEEEEEECCCCc
Confidence            3899998 9999999999999      89999999987643

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=94.66  E-value=0.037  Score=38.02  Aligned_cols=32  Identities=22%  Similarity=0.245  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||.|..|...|..|.+      .|.+|.++++++
T Consensus         5 ~i~iiG~G~mG~~~a~~l~~------~g~~v~~~~~~~   36 (259)
T 2ahr_A            5 KIGIIGVGKMASAIIKGLKQ------TPHELIISGSSL   36 (259)
T ss_dssp             EEEEECCSHHHHHHHHHHTT------SSCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCeEEEECCCH
Confidence            59999999999999999988      788999999875

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.54  E-value=0.054  Score=38.25  Aligned_cols=33  Identities=15%  Similarity=0.218  Sum_probs=29.6

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|+|| |-.|..++..|.+      .|.+|+++.|.+.
T Consensus        13 ~ilVtGatG~iG~~l~~~L~~------~g~~V~~l~R~~~   46 (318)
T 2r6j_A           13 KILIFGGTGYIGNHMVKGSLK------LGHPTYVFTRPNS   46 (318)
T ss_dssp             CEEEETTTSTTHHHHHHHHHH------TTCCEEEEECTTC
T ss_pred             eEEEECCCchHHHHHHHHHHH------CCCcEEEEECCCC
Confidence            5999996 9999999999999      8999999998764

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=94.53  E-value=0.076  Score=36.25  Aligned_cols=34  Identities=18%  Similarity=0.378  Sum_probs=28.8

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      -++|.|| |-.|..+|..|++      .|.+|++++|....
T Consensus        24 ~vlITGas~gIG~~la~~l~~------~G~~V~~~~r~~~~   58 (251)
T 3orf_A           24 NILVLGGSGALGAEVVKFFKS------KSWNTISIDFRENP   58 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHH------CCCEEEEEeCCccc
Confidence            4888886 5689999999999      89999999998643

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=94.51  E-value=0.048  Score=40.46  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|||.|..|..+|..|..      .|.+|+++|+++
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka------~Ga~Viv~D~~p  244 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRG------FGARVVVTEVDP  244 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHH------CCCEEEEECCCh
Confidence            469999999999999999988      899999999875

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=94.47  E-value=0.051  Score=40.51  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|||.|..|..+|..|.-      .|.+|++.|+++
T Consensus       248 KTVgVIG~G~IGr~vA~~lra------fGa~Viv~d~dp  280 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAG------AGARVKVTEVDP  280 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHH------CCCEEEEEeCCc
Confidence            469999999999999999987      799999999875

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=94.44  E-value=0.081  Score=35.86  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=29.0

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .++|.|| |..|..++..|++      .|.+|+++.|.+.
T Consensus         3 ~vlVtGasg~iG~~l~~~L~~------~g~~V~~~~r~~~   36 (255)
T 2dkn_A            3 VIAITGSASGIGAALKELLAR------AGHTVIGIDRGQA   36 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTCEEEEEESSSS
T ss_pred             EEEEeCCCcHHHHHHHHHHHh------CCCEEEEEeCChh
Confidence            3889987 8899999999999      8999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	2e-44
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	3e-15
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	1e-14
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	6e-14
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	6e-11
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	2e-10
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	1e-09
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	2e-09
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	3e-09
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	3e-09
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	8e-09
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	1e-08
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	3e-08
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	3e-08
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	3e-08
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	4e-08
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	4e-08
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	4e-08
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	5e-08
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	7e-08
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	8e-08
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	8e-08
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	1e-07
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	1e-07
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	1e-07
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	2e-07
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	2e-07
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	2e-07
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	3e-07
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	3e-07
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	3e-07
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	3e-07
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	4e-07
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	5e-07
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	1e-06
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	1e-06
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	3e-06
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	3e-06
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	3e-06
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	3e-06
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	4e-06
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	5e-06
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	6e-06
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	6e-06
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	7e-06
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	9e-06
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	1e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	1e-05
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	3e-05
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	3e-05
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	3e-05
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	5e-05
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	9e-05
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	1e-04
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	2e-04
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	3e-04
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	3e-04
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	3e-04
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	4e-04
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	5e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	7e-04
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	7e-04
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.001
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	0.001

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  149 bits (376), Expect = 2e-44
 Identities = 119/170 (70%), Positives = 141/170 (82%)

Query: 13  DVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
            V+MERF + ADVVIVG GPAG++AA RLKQLA +  K+L+VCLVEKAA +G H LSGA 
Sbjct: 23  GVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGAC 82

Query: 73  IDPIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH 132
           +DP A  EL PDWK+ GAPLNTPV ED+F  LT+  RI +PILPG+PMNNHGNYVVRLGH
Sbjct: 83  LDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGH 142

Query: 133 VVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDGSPK 182
           +V W+GEQAEA+GVE+YPG  A+E+L+H DGSVKGIAT DVGI KDG+PK
Sbjct: 143 LVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 192

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 69.3 bits (168), Expect = 3e-15
 Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 11/154 (7%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
           DV+++GGGP+G+ AAI   +          V L++K  ++G  +           N L  
Sbjct: 4   DVIVIGGGPSGLMAAIGAAEEG------ANVLLLDKGNKLGRKLAISGGGRCNVTNRLPL 57

Query: 84  DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH-----VVKWLG 138
           D      P N       F+       I      G+ +    +  +         VV  L 
Sbjct: 58  DEIVKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALL 117

Query: 139 EQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGD 172
            + + +GV+I    P   + Y    +   I    
Sbjct: 118 TRLKDLGVKIRTNTPVETIEYENGQTKAVILQTG 151

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 68.0 bits (165), Expect = 1e-14
 Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 33/150 (22%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL--NEL 81
           DVV+VG G AG++AA  + +        ++V ++E++   GG    G  +    +     
Sbjct: 35  DVVVVGAGSAGLSAAYEISKNP-----NVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPA 89

Query: 82  LPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQA 141
                ++G   +                           + +             + +  
Sbjct: 90  HLFLDEIGVAYDEQ-------------------------DTYVVVKHAALFTSTIMSKLL 124

Query: 142 EAMGVEIYPGIPASEVLYHGDGSVKGIATG 171
               V+++  + A +++  G+  V G+ T 
Sbjct: 125 ARPNVKLFNAVAAEDLIVKGNR-VGGVVTN 153

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.1 bits (160), Expect = 6e-14
 Identities = 24/165 (14%), Positives = 53/165 (32%), Gaps = 28/165 (16%)

Query: 15  DMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID 74
           D+++F    DV+IVG G +G++AA  + +       +LKVC++E +   GG    G  + 
Sbjct: 44  DLDKFAVS-DVIIVGAGSSGLSAAYVIAKN----RPDLKVCIIESSVAPGGGSWLGGQLF 98

Query: 75  PIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVV 134
              +                             + + IP        ++         + 
Sbjct: 99  SAMVMRKPAHLFL--------------------QELEIPY---EDEGDYVVVKHAALFIS 135

Query: 135 KWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG 179
             L +  +   V+++      +++         +    V      
Sbjct: 136 TVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTL 180

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 57.2 bits (137), Expect = 6e-11
 Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 8/141 (5%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDPIALNELL 82
           + +I+G G AG+  A +L +L         V + +   ++G  IL SG         E+ 
Sbjct: 6   ENIIIGAGAAGLFCAAQLAKLG------KSVTVFDNGKKIGRKILMSGGGFCNFTNLEVT 59

Query: 83  PDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGH-VVKWLGEQA 141
           P       P        ++        +    +          +       +V+ L  + 
Sbjct: 60  PAHYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSEC 119

Query: 142 EAMGVEIYPGIPASEVLYHGD 162
           +  G +I      S+V    +
Sbjct: 120 DKYGAKILLRSEVSQVERIQN 140

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 56.1 bits (133), Expect = 2e-10
 Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
            V++VG G +G++AA RL +    D     + ++E    +GG +                
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITD-----LLILEATDHIGGRMHK---------TNFAG 47

Query: 84  DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQA 141
              +LGA     V+  K   +       + +       ++    V       +  +  
Sbjct: 48  INVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYV 105

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 54.2 bits (129), Expect = 1e-09
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI 73
           D++I+GGG +G  AA      A+  G  LKV LVEKAA      ++  + 
Sbjct: 22 TDILIIGGGFSGCGAAYEAAYWAKLGG--LKVTLVEKAAVERSGAVAQGLS 70

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
          M+ F+  AD+ IVG G AG+ AAI   Q         K+ L+ K   +  H
Sbjct: 1  MQTFQ--ADLAIVGAGGAGLRAAIAAAQA----NPNAKIALISKVYPMRSH 45

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-09
 Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 17/104 (16%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
           DVV+VGGG +GMAAA  L          L V ++E    VGG   +        +     
Sbjct: 1   DVVVVGGGISGMAAAKLLHD------SGLNVVVLEARDRVGGRTYTLRNQKVKYV----- 49

Query: 84  DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYV 127
              DLG     P            K +G+       +    ++V
Sbjct: 50  ---DLGGSYVGPTQNRILRLA---KELGLETYKVNEVERLIHHV 87

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 52.6 bits (125), Expect = 3e-09
 Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 19/166 (11%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
            V I+G GP+G+     L +        +   ++E+           A +    + +LL 
Sbjct: 4   QVAIIGAGPSGLLLGQLLHK------AGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLR 57

Query: 84  DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEA 143
           +   +   +       +   +  + +     L  +          +   V + L E  EA
Sbjct: 58  EA-GVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQ-TEVTRDLMEAREA 115

Query: 144 MGVEIYPG----------IPASEVLYHGDGSVKGIATGDVGIAKDG 179
            G                     V +  DG    +   D     DG
Sbjct: 116 CGATTVYQAAEVRLHDLQGERPYVTFERDGERLRL-DCDYIAGCDG 160

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 51.6 bits (122), Expect = 8e-09
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
           D  DVV+VG G AG +AAI             KV L+EK   +GG+
Sbjct: 14 HDTVDVVVVGSGGAGFSAAISATDSG------AKVILIEKEPVIGGN 54

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 4  FGSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63
            + K+ Q        ++  DVVI+G G AG+AAA+  +          KV L+EK    
Sbjct: 5  VDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAG------AKVILLEKEPIP 58

Query: 64 GGH 66
          GG+
Sbjct: 59 GGN 61

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNE 80
          DVV++GGGP G +AA             LKV +VE+   +GG  L+   I   AL  
Sbjct: 8  DVVVLGGGPGGYSAAFAAADEG------LKVAIVERYKTLGGVCLNVGCIPSKALLH 58

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.8 bits (117), Expect = 3e-08
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
          DV+++G G      +  +      +GK  KV  +++    GG   S
Sbjct: 8  DVIVLGTGLTECILSGIMS----VNGK--KVLHMDRNPYYGGESSS 47

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 49.8 bits (117), Expect = 3e-08
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
           VVIVG G AG++AA  L           +V ++E +   GG + +    +      L P
Sbjct: 32 HVVIVGAGMAGLSAAYVLAG------AGHQVTVLEASERPGGRVRTYRNEEAGWYANLGP 85

Query: 84 DWKDLGAPL 92
                  +
Sbjct: 86 MRLPEKHRI 94

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 49.3 bits (116), Expect = 4e-08
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 15/147 (10%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA---LNE 80
            + +VGG  +G+ AA+ L+         + V + E++ +      +G V+ P     L E
Sbjct: 6   RIAVVGGSISGLTAALMLRD------AGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLE 59

Query: 81  LLPDWKDLGAPLNTPVHEDKF------AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVV 134
              +   +  P ++  + D        +     +      + G      G         +
Sbjct: 60  QGVELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCL 119

Query: 135 KWLGEQAEAMGVEIYPGIPASEVLYHG 161
             L + +E + +    G  A      G
Sbjct: 120 VGLSQDSETVQMRFSDGTKAEANWVIG 146

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
            V++VG G AG  A++  K+          V LV+KA   GG+
Sbjct: 20 TQVLVVGAGSAGFNASLAAKKAG------ANVILVDKAPFSGGN 57

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 49.4 bits (117), Expect = 4e-08
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 6/46 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
          D +IVG G  G   A  LK+         KV ++EK   +GG+  +
Sbjct: 3  DYIIVGSGLFGAVCANELKK------LNKKVLVIEKRNHIGGNAYT 42

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 49.1 bits (116), Expect = 5e-08
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DV++VG G +G+ A  RL++L         V ++E A +VGG
Sbjct: 9  DVLVVGAGFSGLYALYRLRELG------RSVHVIETAGDVGG 44

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 49.0 bits (115), Expect = 7e-08
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
          +V +VGGG +G+A A  L+       +     L+E +A +GG + +
Sbjct: 2  NVAVVGGGISGLAVAHHLRS------RGTDAVLLESSARLGGAVGT 41

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.6 bits (114), Expect = 8e-08
 Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 8/151 (5%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNEL-- 81
           D++I G G  G++ A+ L Q          V L+E ++E+      G  I P A+  L  
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIGK-----VTLLESSSEIRPLG-VGINIQPAAVEALAE 56

Query: 82  LPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQA 141
           L     L A                +       +         +       ++     + 
Sbjct: 57  LGLGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRE 116

Query: 142 EAMGVEIYPGIPASEVLYHGDGSVKGIATGD 172
                 +  G+    +       + G   G 
Sbjct: 117 RLGQQAVRTGLGVERIEERDGRVLIGARDGH 147

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 47.9 bits (113), Expect = 8e-08
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNE 80
          DVVI+GGGP G  AAI+  QL        K   +EK   +GG  L+   I   AL  
Sbjct: 5  DVVIIGGGPGGYVAAIKAAQLG------FKTTCIEKRGALGGTCLNVGCIPSKALLH 55

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 1e-07
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
          DV+++G G      +  L      DGK  KV  ++K    GG   S
Sbjct: 7  DVIVLGTGITECILSGLLS----VDGK--KVLHIDKQDHYGGEAAS 46

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68
          DVVI+GGGPAG  AAI+  QL            VEK  ++GG  L
Sbjct: 7  DVVIIGGGPAGYVAAIKAAQLG------FNTACVEKRGKLGGTCL 45

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 48.3 bits (113), Expect = 1e-07
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
          V ++G G +G+AAA +LK         L V + E   + GG + S
Sbjct: 4  VAVIGAGVSGLAAAYKLKI------HGLNVTVFEAEGKAGGKLRS 42

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
          ++IVG G +G     +L +      K  +V ++++   +GG+   
Sbjct: 5  ILIVGAGFSGAVIGRQLAE------KGHQVHIIDQRDHIGGNSYD 43

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 2e-07
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILS 69
            V+I+G G +G+AAA +L+         + V L+E    VGG + +
Sbjct: 6  GKVIIIGSGVSGLAAARQLQS------FGMDVTLLEARDRVGGRVAT 46

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 5/150 (3%)

Query: 20  EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG----GHILSGAVIDP 75
           E   DV+IVG GPAG+ AA  L +   +   +LKV +++K +          L    ++ 
Sbjct: 5   ESYCDVLIVGAGPAGLMAARVLSEYVRQ-KPDLKVRIIDKRSTKVYNGQADGLQCRTLES 63

Query: 76  IALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVK 135
           +    L          ++T    +        +   IP         H   + +     +
Sbjct: 64  LKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERR 123

Query: 136 WLGEQAEAMGVEIYPGIPASEVLYHGDGSV 165
            L   AE     I    P        D S 
Sbjct: 124 ILDSIAEISDTRIKVERPLIPEKMEIDSSK 153

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 47.1 bits (110), Expect = 3e-07
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
          D +++GGG AG+ AA+  +Q      K L   ++        H
Sbjct: 7  DSLVIGGGLAGLRAAVATQQ------KGLSTIVLSLIPVKRSH 43

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
           DV+I+G G AG++ A+RL         + +V ++ K     G 
Sbjct: 8  CDVLIIGSGAAGLSLALRLAD-------QHQVIVLSKGPVTEGS 44

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 10/111 (9%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
             V++G G     +A+R   L E     ++  ++E     G           I    L P
Sbjct: 4   PAVVIGTGYGAAVSALR---LGEAG---VQTLMLEM----GQLWNQPGPDGNIFCGMLNP 53

Query: 84  DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVV 134
           D +       T      F +L    R   P    +   N+    V +G  V
Sbjct: 54  DKRSSWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGV 104

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 46.6 bits (109), Expect = 3e-07
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
          D++++GGG  GMAAA R  +         KV LVEK+   G  +  G V
Sbjct: 3  DLIVIGGGSGGMAAARRAARHN------AKVALVEKSRLGGTCVNVGCV 45

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 46.6 bits (109), Expect = 4e-07
 Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 8/143 (5%)

Query: 25  VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG----HILSGAVIDPIALNE 80
           + I+G GP+G+  A  L      +    +V L E+    GG           +   + N 
Sbjct: 7   IAIIGAGPSGLVTAKALL----AEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNP 62

Query: 81  LLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQ 140
           +L     +G           +  L  +  I +                    + ++    
Sbjct: 63  ILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIY 122

Query: 141 AEAMGVEIYPGIPASEVLYHGDG 163
           A+ +   I       ++      
Sbjct: 123 AQPLLPFIKLATDVLDIEKKDGS 145

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 45.8 bits (107), Expect = 5e-07
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL 78
          V  +VI+GGGPAG  AA+       +     +V +++    +GG  +    +     
Sbjct: 1  VTRIVILGGGPAGYEAALVAATSHPET---TQVTVIDC-DGIGGAAVLDDCVPSKTF 53

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (105), Expect = 1e-06
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI 67
          D++I+GGG  G+AAA    +         KV +++         
Sbjct: 5  DLIIIGGGSGGLAAAKEAAKFD------KKVMVLDFVTPTPLGT 42

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 13/112 (11%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
           D+V++G G  G+ AA     L +K     +V +++     G    S   +    +N    
Sbjct: 5   DLVVIGAGSGGLEAAWNAATLYKK-----RVAVIDVQMVHGPPFFSA--LGGTCVNVGCV 57

Query: 84  DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVK 135
             K                +L +S   G             N +      V 
Sbjct: 58  PKK------LMVTGAQYMEHLRESAGFGWEFDRTTLRAEWKNLIAVKDEAVL 103

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 43.7 bits (102), Expect = 3e-06
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 7/45 (15%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL 68
          + ++VG GP G  AAIR  QL        KV +VEK   +GG  L
Sbjct: 5  ETLVVGAGPGGYVAAIRAAQLG------QKVTIVEK-GNLGGVCL 42

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 26/170 (15%), Positives = 47/170 (27%), Gaps = 26/170 (15%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDP-------- 75
           D + +GGG  G+A+  R            K  L+E     G  +  G V           
Sbjct: 4   DYIAIGGGSGGIASINRAAMYG------QKCALIEAKELGGTCVNVGCVPKKVMWHAAQI 57

Query: 76  ------------IALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNH 123
                               +W+ L A     +     +Y     +  + ++ G      
Sbjct: 58  REAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD 117

Query: 124 GNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDV 173
              +   G  +          G   +P  PA++ +      VK    G +
Sbjct: 118 AKTLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYI 167

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH 66
          D V++G G AGM AA+++ Q            L+ K      H
Sbjct: 9  DAVVIGAGGAGMRAALQISQSG------QTCALLSKVFPTRSH 45

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 25 VVIVGGGPAGMAAAIRL-KQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
          + IVG GP+   AA  L K     +  ++ V ++E      G + SG   D   +  +  
Sbjct: 5  IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISK 64

Query: 84 DWKDLGAPLNTPVH 97
           ++           
Sbjct: 65 QFEKTAEDPRFRFF 78

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 10/113 (8%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
             +++G G  G  AA+R   L +     +   +VE     G    +      I    L P
Sbjct: 9   PALVIGSGYGGAVAALR---LTQAG---IPTQIVEM----GRSWDTPGSDGKIFCGMLNP 58

Query: 84  DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKW 136
           D + +     T      F     +K I   +         G  V +   V   
Sbjct: 59  DKRSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGG 111

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 43.1 bits (100), Expect = 5e-06
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          DV+++G GP G  AAI+  QL       LK  L+EK     G
Sbjct: 5  DVIVIGAGPGGYVAAIKSAQLG------LKTALIEKYKGKEG 40

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 43.0 bits (100), Expect = 6e-06
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
          D+V++G G  G+ A      L +K     +V +++     G 
Sbjct: 5  DLVVIGAGSGGLEAGWNAASLHKK-----RVAVIDLQKHHGP 41

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 42.7 bits (99), Expect = 6e-06
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 6/41 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG 64
           ++I+GGGP G  AAIR  QL       +   LVE  A  G
Sbjct: 7  TLLIIGGGPGGYVAAIRAGQLG------IPTVLVEGQALGG 41

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.6 bits (99), Expect = 7e-06
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPD 84
          + +VG GPAG   A  L     K      V + EK     G +  G   D   +  ++  
Sbjct: 4  ICVVGSGPAGFYTAQHLL----KHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINT 59

Query: 85 WKDLGAPLNTPVH 97
          +           +
Sbjct: 60 FTQTARSDRCAFY 72

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 42.4 bits (98), Expect = 9e-06
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGA 71
          DV++VG G  GMAA  +L +      + +K  LV+       +     
Sbjct: 5  DVIVVGAGSMGMAAGYQLAK------QGVKTLLVDAFDPPHTNGSHHG 46

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL 78
          D + +GGG AG   +  L+ +        +  +V++   +GG     A +     
Sbjct: 44 DAIFIGGGAAGRFGSAYLRAM------GGRQLIVDRWPFLGGSCPHNACVPHHLF 92

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG 64
          D +++GGG  G+A+A R  +L        +  +VE     G
Sbjct: 5  DYLVIGGGSGGLASARRAAELG------ARAAVVESHKLGG 39

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 6/102 (5%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
           DVVIVG GP G   A     L        KV + +      G  +     + +   + + 
Sbjct: 6   DVVIVGSGPIGCTYARE---LVGAG---YKVAMFDIGEIDSGLKIGAHKKNTVEYQKNID 59

Query: 84  DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGN 125
            + ++       V       +  +            + N  N
Sbjct: 60  KFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSN 101

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI--DPIALNEL 81
           D +I GGG  G+  A +   L E + K +KV ++EK    G +  +   I  DP A  ++
Sbjct: 26  DYIIAGGGLTGLTVAAK---LTE-NPK-IKVLVIEK----GFYESNDGAIIEDPNAYGQI 76

Query: 82  L---PDWKDLGAPL--NTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLG 131
                D   L  PL  N   +      L  S  I              ++    G
Sbjct: 77  FGTTVDQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFG 131

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (92), Expect = 3e-05
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 6/36 (16%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
          DV+IVG GPAG AAAI   +        ++  L+ +
Sbjct: 3  DVLIVGSGPAGAAAAIYSARKG------IRTGLMGE 32

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 40.1 bits (92), Expect = 5e-05
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 6/43 (13%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
           + V++GGG  G A A  L +      +     L E     G 
Sbjct: 5  YEAVVIGGGIIGSAIAYYLAK------ENKNTALFESGTMGGR 41

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 39.7 bits (91), Expect = 9e-05
 Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 5/38 (13%)

Query: 23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
            +VI+G G  G   A  L      +     + ++++ 
Sbjct: 2  PRIVIIGAGIVGTNLADELVTRGWNN-----ITVLDQG 34

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 3  SFGSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
          S+ S   D  D+++E      D VIVGGG +G   A     L+EK     KV ++E
Sbjct: 10 SYLSFAYDATDLELE---GSYDYVIVGGGTSGCPLAAT---LSEK----YKVLVLE 55

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 6/36 (16%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
           + IVG GPA   AAI   +        LK  L E 
Sbjct: 7  RLCIVGSGPAAHTAAIYAARAE------LKPLLFEG 36

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG 65
           V+IVG G +G   A  L Q        ++V L+ ++ +   
Sbjct: 4  QVLIVGAGFSGAETAFWLAQKG------VRVGLLTQSLDAVM 39

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV 72
           ++I+G GPAG  AA+   +        L+  L+    + G    +  V
Sbjct: 7  KLLILGSGPAGYTAAVYAAR------ANLQPVLITGMEKGGQLTTTTEV 49

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 24  DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLP 83
           D +IVG GP G+ AA RL +     GK  KV L+E           G  + P A +  L 
Sbjct: 4   DYIIVGAGPGGIIAADRLSE----AGK--KVLLLE-RGGPSTKQTGGTYVAPWATSSGLT 56

Query: 84  DWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNY 126
            +   G   +     + F +          ++ G    N   Y
Sbjct: 57  KFDIPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALY 99

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 37.5 bits (85), Expect = 4e-04
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA 60
          VV+VGGG  G  AA  +K         ++V L+E  
Sbjct: 5  VVVVGGGTGGATAAKYIKLA----DPSIEVTLIEPN 36

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 9/54 (16%)

Query: 5  GSSKSDQFDVDMERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE 58
           S  +D  DV         D +I GGG  G+  A RL +    +   + V ++E
Sbjct: 4  ASLLTDPKDVSGRTV----DYIIAGGGLTGLTTAARLTE----NPN-ISVLVIE 48

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.8 bits (83), Expect = 7e-04
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV 63
          V+++G    G  A   L  L      + ++   EK   +
Sbjct: 3  VIVLGSSHGGYEAVEELLNL----HPDAEIQWYEKGDFI 37

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (83), Expect = 7e-04
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 25  VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPD 84
           + +VG GPAG+A AI          +  +V L +  +E+GG       I           
Sbjct: 46  LAVVGAGPAGLAFAINAAA------RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLR 99

Query: 85  W-KDLGAPLNTPVHEDKFAYLTKSKRIGIPILP-GMPMNNHGNYVVRLGHVVKWLG 138
           + + +       +  +      + +     IL  G+P       ++  G  V  +G
Sbjct: 100 YYRRMIEVTGVTLKLNHTVTADQLQAFDETILASGIPNRALAQPLIDSGKTVHLIG 155

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 35.9 bits (81), Expect = 0.001
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 5/35 (14%)

Query: 25 VVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEK 59
          + ++G GPA ++ A  L +L   D     + + EK
Sbjct: 7  IALLGAGPASISCASFLARLGYSD-----ITIFEK 36

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 12/109 (11%)

Query: 23  ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG--------GHILSGAVID 74
              +++GGG A  AAA  ++          +V +V +  E+             S     
Sbjct: 5   VPFLLIGGGTAAFAAARSIRAR----DPGARVLIVSEDPELPYMRPPLSKELWFSDDPNV 60

Query: 75  PIALNELLPDWKDLGAPLNTPVHEDKFAYLTKSKRIGIPILPGMPMNNH 123
              L     + K+       P        L   +  G+ +L G  +   
Sbjct: 61  TKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQL 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.87
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.81
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.81
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.79
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.79
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.78
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.78
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.76
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.75
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.67
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.65
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.64
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.63
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.62
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.61
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.61
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.56
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.55
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.5
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.5
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.48
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.46
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.45
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.4
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.36
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.36
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.35
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.33
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.3
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.29
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.28
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.27
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.26
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.26
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.26
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.26
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.24
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.24
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.22
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.22
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.21
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.19
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.19
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.17
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.16
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.16
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.15
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.14
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.13
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.12
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.11
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.11
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.11
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.11
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.11
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.1
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.1
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.09
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	99.08
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.08
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.07
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.07
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.06
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.05
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.05
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	99.04
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.04
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.04
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.03
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.03
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.02
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.01
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.0
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.95
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.93
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.92
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.88
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.85
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.82
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.81
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.77
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.75
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.69
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.62
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.27
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.16
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.1
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.0
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.96
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.94
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.9
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.81
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.8
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.73
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.7
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.69
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.63
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.61
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.61
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	97.54
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.51
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.47
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.36
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.32
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.28
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.25
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.22
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.19
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.09
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.0
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.95
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.94
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.91
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.87
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.84
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.82
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.8
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.79
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.77
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.75
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.75
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.74
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.73
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.73
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.73
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.73
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.68
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.67
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.65
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.64
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.52
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.52
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.51
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.51
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.46
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.4
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.38
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.38
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.35
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.34
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.32
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.26
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.25
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.25
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.21
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.17
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.15
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.12
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.09
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.09
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	96.0
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.99
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.99
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.79
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.74
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.72
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	95.69
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.57
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.47
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.4
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.36
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.33
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.31
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.29
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.28
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.28
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.18
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.11
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.1
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.04
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.92
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.91
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	94.88
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	94.87
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.85
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.67
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.46
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.97
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.96
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	93.91
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	93.72
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.65
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	93.49
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.39
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.36
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	93.31
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.12
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	92.96
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.84
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.82
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.75
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	92.68
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	92.67
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	92.59
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	92.39
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	92.36
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.28
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	92.24
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	92.17
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	92.09
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	91.96
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.93
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	91.77
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.74
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	91.64
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	91.62
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.55
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	91.5
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	91.46
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	91.19
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	91.16
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	91.0
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.99
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	90.93
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	90.88
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	90.86
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	90.71
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	90.7
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	90.55
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	90.54
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.5
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	90.35
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	90.27
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.2
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.2
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	90.2
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.16
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	90.13
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	89.89
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	89.88
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	89.88
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	89.84
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	89.6
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	89.53
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	89.47
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	89.44
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.41
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	89.4
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	89.36
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	89.35
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	89.25
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	89.24
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	89.2
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	89.16
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	89.16
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	89.15
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	89.15
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	88.95
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	88.92
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	88.87
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	88.79
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	88.77
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	88.68
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	88.62
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	88.51
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	88.44
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	88.33
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	88.24
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.21
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	88.13
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	88.03
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	87.6
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	87.46
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	87.27
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	86.96
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	86.86
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	86.82
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	86.67
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	86.38
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	86.22
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	85.84
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	85.79
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	85.32
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	85.19
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	85.19
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	85.04
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	84.92
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	84.77
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	84.58
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	84.52
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	83.99
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	83.91
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	83.83
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	83.83
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	83.8
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.78
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	83.18
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	83.1
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	83.01
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	82.34
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	82.14
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	82.07
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	82.06
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	81.96
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	81.83
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	81.82
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	81.81
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	81.44
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	81.21
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	80.98
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	80.86
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	80.73
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	80.59
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	80.55
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	80.43

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.87  E-value=6e-22  Score=143.20  Aligned_cols=160  Identities=71%  Similarity=1.201  Sum_probs=116.9

Q ss_pred             cccccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCcc
Q psy2240          16 MERFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTP   95 (182)
Q Consensus        16 ~~~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (182)
                      |..+..++|||||||||+|+++|+.|++.++...+|++|+||||...++....+++.+.+..+.++++.|..........
T Consensus        26 m~~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~  105 (380)
T d2gmha1          26 MERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTP  105 (380)
T ss_dssp             CCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEE
T ss_pred             cccccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccc
Confidence            44445679999999999999999999986666667999999999999998888888899999988888887665444443


Q ss_pred             chhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEeCCEEE
Q psy2240          96 VHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGI  175 (182)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~~~~vi  175 (182)
                      .......+......................+.+.+..+..++.+.++..++.+..+..+.++..++++.+.++...+..+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  185 (380)
T d2gmha1         106 VTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGI  185 (380)
T ss_dssp             CCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEE
T ss_pred             eecceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccc
Confidence            33322212111111222222222334445678888999999999999999999999999999987888777665544333

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.81  E-value=2.9e-20  Score=127.35  Aligned_cols=136  Identities=20%  Similarity=0.265  Sum_probs=74.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccc--c------ChhHHhhhhhhHHhcCCC-
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV--I------DPIALNELLPDWKDLGAP-   91 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~--~------~~~~~~~~~~~~~~~~~~-   91 (182)
                      ++|||+|||||++|+++|+.|++      +|++|+||||.+.+++.....+.  .      ....+............. 
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~------~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAE------EGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSA   74 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH------CCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhh
Confidence            36899999999999999999999      89999999999887764431111  0      001110000000000000 


Q ss_pred             CCccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE
Q psy2240          92 LNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG  167 (182)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~  167 (182)
                      ...........++.... ..........   ..........+.+.|.+.+++.|++|+++++|++|..++ +.+.+
T Consensus        75 ~~~~~~~~~~~~~~~~g-~~~~~~~~~~---~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~  145 (251)
T d2i0za1          75 FSIFNNEDIITFFENLG-VKLKEEDHGR---MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-GQTKA  145 (251)
T ss_dssp             HHHSCHHHHHHHHHHTT-CCEEECGGGE---EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEE
T ss_pred             hhhhhhHHHHHHHHhcC-Cccccccccc---eecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEEC-CEEEE
Confidence            00000011112222111 1111000000   001123445788899999999999999999999998744 44443

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.81  E-value=3.7e-20  Score=127.03  Aligned_cols=152  Identities=15%  Similarity=0.120  Sum_probs=85.3

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cc--cccChhHHhhhhhhHHhcCCCCCcc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SG--AVIDPIALNELLPDWKDLGAPLNTP   95 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~   95 (182)
                      |.+.+||+|||||++|+++|+.|++      +|++|+||||.+.++.... ++  .+...................+...
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~------~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~   74 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAK------LGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSA   74 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHH
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHH
Confidence            4456899999999999999999999      8999999999998775432 11  1110000000000000000000000


Q ss_pred             ----chhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcE----E-
Q psy2240          96 ----VHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSV----K-  166 (182)
Q Consensus        96 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~----~-  166 (182)
                          .......++.... ..+........+    ..-....+.+.|.+.+++.|++|+++++|++++..+++..    + 
T Consensus        75 l~~~~~~~~~~~~~~~g-~~~~~~~~~~~~----~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~  149 (253)
T d2gqfa1          75 LARYTNWDFISLVAEQG-ITYHEKELGQLF----CDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQ  149 (253)
T ss_dssp             HHHSCHHHHHHHHHHTT-CCEEECSTTEEE----ETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEE
T ss_pred             hhhhcccchhhhhhhcC-cceeeecCCccc----cccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEe
Confidence                1112222332211 111111111100    1123467889999999999999999999999987665431    1 


Q ss_pred             ----EEEeCCEEEecCCCC
Q psy2240         167 ----GIATGDVGIAKDGSP  181 (182)
Q Consensus       167 ----~v~~~~~vi~adG~~  181 (182)
                          .+.++.+|||++|.+
T Consensus       150 ~~~~~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         150 VNSTQWQCKNLIVATGGLS  168 (253)
T ss_dssp             ETTEEEEESEEEECCCCSS
T ss_pred             cCCEEEEeCEEEEcCCccc
Confidence                144556777777764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.79  E-value=4.9e-19  Score=122.70  Aligned_cols=139  Identities=20%  Similarity=0.262  Sum_probs=80.6

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccCh-------hHHh----hhhhhHH
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVIDP-------IALN----ELLPDWK   86 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~~-------~~~~----~~~~~~~   86 (182)
                      |..++||+|||||++|+++|++|++      +|.+|+||||+...+|.+. +++.+..       ..+.    .....|+
T Consensus         1 m~~~~DvvIIGaGi~Gls~A~~La~------~G~~V~vlE~~~~~~gaS~~~~G~l~~~~~~~~~~~~~~l~~~s~~~~~   74 (276)
T d1ryia1           1 MKRHYEAVVIGGGIIGSAIAYYLAK------ENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYK   74 (276)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTT
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHH------CCCcEEEEeCCCCCCCcccccccccccccccccccccchhhhhhhhhcc
Confidence            3457999999999999999999999      8999999999876555543 2222211       0110    1111111


Q ss_pred             h--------cCCCC--Cc--c----chhhhHHHHHhhccCC-------------CCCCCC-C--CCCCCCccccchHHHH
Q psy2240          87 D--------LGAPL--NT--P----VHEDKFAYLTKSKRIG-------------IPILPG-M--PMNNHGNYVVRLGHVV  134 (182)
Q Consensus        87 ~--------~~~~~--~~--~----~~~~~~~~~~~~~~~~-------------~~~~~~-~--~~~~~~~~~~~~~~l~  134 (182)
                      .        .+...  ..  .    ........+.......             .+.... .  ..+.+....+++..+.
T Consensus        75 ~l~~~~~~~~g~~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~g~i~~~~~~  154 (276)
T d1ryia1          75 GLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVC  154 (276)
T ss_dssp             THHHHHHHHHCCCCCCBCCCEEEEESSHHHHHHHHTTTTSTTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHH
T ss_pred             ccccccccccccccccccccceeeeeecccccccccccccccccccccccccccCcccccceeEEEEeccceeeecccch
Confidence            1        01110  00  0    0111122221111100             001000 0  1122345678999999


Q ss_pred             HHHHHHHHHcCcEEecCCccceeEEcCCC
Q psy2240         135 KWLGEQAEAMGVEIYPGIPASEVLYHGDG  163 (182)
Q Consensus       135 ~~l~~~~~~~gv~i~~~~~v~~i~~~~~g  163 (182)
                      +.|.+.+++.|++|+++++|++|+.+.+.
T Consensus       155 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~  183 (276)
T d1ryia1         155 KAYVKAAKMLGAEIFEHTPVLHVERDGEA  183 (276)
T ss_dssp             HHHHHHHHHTTCEEETTCCCCEEECSSSS
T ss_pred             hHHHHHHHHcCCEEecceEEEeEEeecce
Confidence            99999999999999999999999875433

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.79  E-value=1.9e-18  Score=121.59  Aligned_cols=143  Identities=27%  Similarity=0.347  Sum_probs=85.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-ccccc-Ch-hH----------HhhhhhhHH
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVI-DP-IA----------LNELLPDWK   86 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~-~~-~~----------~~~~~~~~~   86 (182)
                      ..++||||||+|++|+++|+.|++      .|.+|+||||.+..+|.+. +++.+ .. ..          ......++.
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~------~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~   87 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATD------SGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTM   87 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHH
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHH
Confidence            457899999999999999999999      8999999999998887653 33222 10 01          111112222


Q ss_pred             hcCCCCCccc--------hhhhHHHHHhhccCCCCCCCCC-----C-CCCCCccccchHHHHHHHHHHHHHcCcEEecCC
Q psy2240          87 DLGAPLNTPV--------HEDKFAYLTKSKRIGIPILPGM-----P-MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGI  152 (182)
Q Consensus        87 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~  152 (182)
                      .......++.        ..+.+.|+.... ..+......     + ...+.........+.+.+.+.+++.|++|++++
T Consensus        88 ~~~~~~~d~~lv~~~~~~~~~~i~~L~~~G-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~  166 (308)
T d1y0pa2          88 KGGQNINDPALVKVLSSHSKDSVDWMTAMG-ADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNT  166 (308)
T ss_dssp             HHTTTCSCHHHHHHHHHHHHHHHHHHHHTT-CCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSE
T ss_pred             hhhhhccchHHHHHHHHhhhHHHHHHHHcC-CCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEee
Confidence            2222222211        112334443321 111111000     0 001112223345688889999999999999999


Q ss_pred             ccceeEEcCCCcEEEEE
Q psy2240         153 PASEVLYHGDGSVKGIA  169 (182)
Q Consensus       153 ~v~~i~~~~~g~~~~v~  169 (182)
                      +|+++..++++++.||.
T Consensus       167 ~v~~li~~~~G~V~Gv~  183 (308)
T d1y0pa2         167 RGIEVLKDDKGTVKGIL  183 (308)
T ss_dssp             EEEEEEECTTSCEEEEE
T ss_pred             ccchhhhhccccccccc
Confidence            99999887878877654

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.78  E-value=2.7e-18  Score=121.57  Aligned_cols=143  Identities=25%  Similarity=0.318  Sum_probs=86.4

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-ccccc-Ch-----------hHHhhhhhhH
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVI-DP-----------IALNELLPDW   85 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~-~~-----------~~~~~~~~~~   85 (182)
                      .+.++||+|||+|++|+++|+.|++      +|++|+||||.+..+|.+. +.+.+ ..           ......+.++
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~------~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~   93 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARD------AGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDT   93 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHT------TTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHH
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHH------CCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHH
Confidence            3457899999999999999999999      8999999999998887653 22221 10           0112222333


Q ss_pred             HhcCCCCCccc--------hhhhHHHHHhhccCCCCCCCCC-----C-CCCCCccccchHHHHHHHHHHHHHcCcEEecC
Q psy2240          86 KDLGAPLNTPV--------HEDKFAYLTKSKRIGIPILPGM-----P-MNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPG  151 (182)
Q Consensus        86 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~  151 (182)
                      ......+.+..        ..+.+.|+.... .++......     + ...+.........+.+.|.+.+.+.|++|+++
T Consensus        94 ~~~~~~~~d~~~~~~~~~~~~~~i~~l~~~G-v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~  172 (322)
T d1d4ca2          94 MKGGRNINDPELVKVLANNSSDSIDWLTSMG-ADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLN  172 (322)
T ss_dssp             HHHTTTCSCHHHHHHHHHTHHHHHHHHHHTT-CCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETT
T ss_pred             HhccccccCHHHhhhhhhhhhhhhhhhhhhc-ccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEe
Confidence            33332322211        112233433321 112111000     0 00111222345678899999999999999999


Q ss_pred             CccceeEEcCCCcEEEE
Q psy2240         152 IPASEVLYHGDGSVKGI  168 (182)
Q Consensus       152 ~~v~~i~~~~~g~~~~v  168 (182)
                      ++|+++..+++++++++
T Consensus       173 t~v~~li~d~~G~V~Gv  189 (322)
T d1d4ca2         173 SRVVRILEDASGKVTGV  189 (322)
T ss_dssp             EEEEEEECCSSSCCCEE
T ss_pred             eecccccccccccccce
Confidence            99999988777776654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.78  E-value=2.1e-18  Score=119.82  Aligned_cols=138  Identities=20%  Similarity=0.217  Sum_probs=79.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-c-ccc-c----C-----hhHHhhhhhhHHh-
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-S-GAV-I----D-----PIALNELLPDWKD-   87 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~-~~~-~----~-----~~~~~~~~~~~~~-   87 (182)
                      ..|||+|||||++|+++|++|++      +|.+|+||||....++... . +.. +    .     ..........|.. 
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~------~G~~V~viE~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l   75 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAK------QGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYEL   75 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH------CCCcEEEEeCCCCCCcccccCCCcceeecccCCcchhhhhcccccceeecc
Confidence            46899999999999999999999      8999999999865532221 1 111 1    0     0111111222222 


Q ss_pred             ---cCCCCCc---------cchhhhH-HHHH--hhccCCCCCC---------CCC-------CCCCCCccccchHHHHHH
Q psy2240          88 ---LGAPLNT---------PVHEDKF-AYLT--KSKRIGIPIL---------PGM-------PMNNHGNYVVRLGHVVKW  136 (182)
Q Consensus        88 ---~~~~~~~---------~~~~~~~-~~~~--~~~~~~~~~~---------~~~-------~~~~~~~~~~~~~~l~~~  136 (182)
                         .+.....         ....... ....  .........+         +..       ..+.+....+++..+...
T Consensus        76 ~~e~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~~  155 (281)
T d2gf3a1          76 EKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRA  155 (281)
T ss_dssp             HHHCSSCCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHH
T ss_pred             hhhhhhccccccceeeeeecchhhhhhhhhhhhccccchhhhhhhHhhhhhhhcccccccceeeeccccccccccccccc
Confidence               1111100         0000111 1111  1111111111         110       112233557888999999


Q ss_pred             HHHHHHHcCcEEecCCccceeEEcCCCc
Q psy2240         137 LGEQAEAMGVEIYPGIPASEVLYHGDGS  164 (182)
Q Consensus       137 l~~~~~~~gv~i~~~~~v~~i~~~~~g~  164 (182)
                      |.+.+++.|++++++++|++|+.+++++
T Consensus       156 l~~~a~~~Gv~i~~~~~V~~i~~~~~~v  183 (281)
T d2gf3a1         156 YRELAEARGAKVLTHTRVEDFDISPDSV  183 (281)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEECSSCE
T ss_pred             cccccccccccccCCcEEEEEEEECCEE
Confidence            9999999999999999999999865543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.76  E-value=8.7e-18  Score=118.66  Aligned_cols=144  Identities=20%  Similarity=0.241  Sum_probs=86.2

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-cccccC---hh---------HHhhhhhhH
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVID---PI---------ALNELLPDW   85 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~~---~~---------~~~~~~~~~   85 (182)
                      +..++||||||+|++|+++|++|++      .|.+|+||||.+..+|.+. +++.+.   ..         .....+.++
T Consensus        16 ~~e~~DVvVIGaG~aGl~AA~~aa~------~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~   89 (317)
T d1qo8a2          16 PSETTQVLVVGAGSAGFNASLAAKK------AGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDA   89 (317)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHH------HTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHH
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHH------CCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHH
Confidence            3457899999999999999999999      8999999999998877653 322221   00         111122222


Q ss_pred             HhcCCCCCccc--------hhhhHHHHHhhccCCCCCCCC--C-CCC---CCCccccchHHHHHHHHHHHHHcCcEEecC
Q psy2240          86 KDLGAPLNTPV--------HEDKFAYLTKSKRIGIPILPG--M-PMN---NHGNYVVRLGHVVKWLGEQAEAMGVEIYPG  151 (182)
Q Consensus        86 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~-~~~---~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~  151 (182)
                      ........+..        ..+.+.|+.... ..+.....  . ...   .+.........+.+.|.+.+++.|++++++
T Consensus        90 ~~~~~~~~d~~lv~~~~~~a~~~i~~l~~~G-v~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~  168 (317)
T d1qo8a2          90 MKGGRQQNDIKLVTILAEQSADGVQWLESLG-ANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLN  168 (317)
T ss_dssp             HHHTTTCSCHHHHHHHHHHHHHHHHHHHHTT-CCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECS
T ss_pred             HHhhccccchhHHHHHHhhhhhhhhhHHHhh-hcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeec
Confidence            22222222211        112333443321 11111100  0 000   001112234578899999999999999999


Q ss_pred             CccceeEEcCCCcEEEEE
Q psy2240         152 IPASEVLYHGDGSVKGIA  169 (182)
Q Consensus       152 ~~v~~i~~~~~g~~~~v~  169 (182)
                      ++++++..++++++.++.
T Consensus       169 ~~v~~l~~~~~g~V~Gv~  186 (317)
T d1qo8a2         169 SRVVKLVVNDDHSVVGAV  186 (317)
T ss_dssp             EEEEEEEECTTSBEEEEE
T ss_pred             cchhheeecccccceeeE
Confidence            999999887888887643

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.75  E-value=1.4e-17  Score=116.83  Aligned_cols=57  Identities=19%  Similarity=0.280  Sum_probs=45.1

Q ss_pred             CCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEe------CCEEEecCCC
Q psy2240         123 HGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIAT------GDVGIAKDGS  180 (182)
Q Consensus       123 ~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~------~~~vi~adG~  180 (182)
                      +....+++..+...|.+.+++.|++|+++++|++|+. +++++.+|.+      ++.||.|.|+
T Consensus       140 ~~~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~-~~~~v~~V~T~~g~i~a~~VV~aaG~  202 (305)
T d1pj5a2         140 PSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADGVIPADIVVSCAGF  202 (305)
T ss_dssp             TTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTEEEECSEEEECCGG
T ss_pred             ccccccchhhhhhhHHhhhhcccccccCCceEEEEEE-eCCEEEEEeccceeEECCEEEEecch
Confidence            4456789999999999999999999999999999997 4556665554      4566666664

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.67  E-value=5.8e-17  Score=115.23  Aligned_cols=145  Identities=16%  Similarity=0.110  Sum_probs=82.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccc----cccChhHHhhhhh-----hHHhc---CCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSG----AVIDPIALNELLP-----DWKDL---GAP   91 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~----~~~~~~~~~~~~~-----~~~~~---~~~   91 (182)
                      .|+|||||++||++|..|++    ++.+.+|+|+||++.+||.+...    .............     .....   ...
T Consensus         6 rVaIIGaG~sGl~~A~~L~~----~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   81 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLA----EKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP   81 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHT----TTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred             eEEEECcCHHHHHHHHHHHH----hCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccc
Confidence            69999999999999999987    11235999999999998764311    1110000000000     00000   000


Q ss_pred             CCccchhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEE--
Q psy2240          92 LNTPVHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIA--  169 (182)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~--  169 (182)
                      ....+..........        +.+.+........+++..+.++|...++..+..|+++++|++++.+++.+.+.+.  
T Consensus        82 ~y~~l~~~~~~~~~~--------~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~  153 (335)
T d2gv8a1          82 LYRDLQTNTPIELMG--------YCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGT  153 (335)
T ss_dssp             CCTTCBCSSCHHHHS--------CTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEES
T ss_pred             cchhhhcCCcHhhhh--------hhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEec
Confidence            000000000000100        0111111222334677889999999998888899999999999986655444332  


Q ss_pred             ---------eCCEEEecCCC
Q psy2240         170 ---------TGDVGIAKDGS  180 (182)
Q Consensus       170 ---------~~~~vi~adG~  180 (182)
                               ..|.||.|+|.
T Consensus       154 ~~~~~~~~~~~d~VI~AtG~  173 (335)
T d2gv8a1         154 KAGSPISKDIFDAVSICNGH  173 (335)
T ss_dssp             STTCCEEEEEESEEEECCCS
T ss_pred             CCCCeEEEEEeeEEEEcccc
Confidence                     24889999996

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.65  E-value=1.7e-15  Score=105.66  Aligned_cols=127  Identities=16%  Similarity=0.202  Sum_probs=82.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCC---CCccc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAP---LNTPV   96 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   96 (182)
                      +..+||+|||||++||++|+.|.+      .|++|+||||.+..||......             +......   .....
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~------~G~~v~i~Ek~~~iGGtW~~n~-------------ypg~~~d~~~~~~~~   65 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRE------LGRSVHVIETAGDVGGVWYWNR-------------YPGARCDIESIEYCY   65 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCTHHHHCC-------------CTTCBCSSCTTTSSC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHh------CCCCEEEEEcCCCcccccccCC-------------CCCceeccccccccc
Confidence            356899999999999999999999      8999999999999887432110             0000000   00000


Q ss_pred             hhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCc--EEecCCccceeEEcCCCcEEEEE-----
Q psy2240          97 HEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGV--EIYPGIPASEVLYHGDGSVKGIA-----  169 (182)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv--~i~~~~~v~~i~~~~~g~~~~v~-----  169 (182)
                      ...... . ...    ++         ......+..+.++|.+.+++.++  .|+++++|++++.+++.....|.     
T Consensus        66 s~~~~~-~-~~~----~~---------~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~  130 (298)
T d1w4xa1          66 SFSEEV-L-QEW----NW---------TERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD  130 (298)
T ss_dssp             CSCHHH-H-HHC----CC---------CBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCC
T ss_pred             cccccc-c-CCC----CC---------ccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeecccccc
Confidence            000000 0 000    00         12334567899999999999887  59999999999876654333333     


Q ss_pred             --eCCEEEecCCC
Q psy2240         170 --TGDVGIAKDGS  180 (182)
Q Consensus       170 --~~~~vi~adG~  180 (182)
                        ..+++|.|.|.
T Consensus       131 ~~~~~~~i~atG~  143 (298)
T d1w4xa1         131 RIRARYLIMASGQ  143 (298)
T ss_dssp             EEEEEEEEECCCS
T ss_pred             ccccceEEEeecc
Confidence              35888988885

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.63  E-value=1.8e-15  Score=107.31  Aligned_cols=41  Identities=29%  Similarity=0.468  Sum_probs=36.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+||||||+|++||++|+.|++      +|.+|+||||.+..++.+
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~------~G~~V~liEK~~~~~g~S   44 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQ------KGLSTIVLSLIPVKRSHS   44 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHT------TTCCEEEECSSCGGGSGG
T ss_pred             eecCEEEECcCHHHHHHHHHHHH------CCCCEEEEecCCCCCCch
Confidence            35799999999999999999999      899999999998766554

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.62  E-value=1.2e-17  Score=116.44  Aligned_cols=145  Identities=17%  Similarity=0.092  Sum_probs=80.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc-ccccccChhH--HhhhhhhHHhc---CCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI-LSGAVIDPIA--LNELLPDWKDL---GAPLNTP   95 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~-~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~   95 (182)
                      ++||+||||||+||++|+.|++      .|++|+||||.+...... ..+..+.+..  +.+.++.|...   .......
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~------~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~   75 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHK------AGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGV   75 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH------HTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCE
T ss_pred             CCCEEEECcCHHHHHHHHHHHH------CCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccce
Confidence            5699999999999999999999      899999999987432110 1122233332  22222222211   1110000


Q ss_pred             chhhhHHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeE-EcCCCcEEE-------
Q psy2240          96 VHEDKFAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVL-YHGDGSVKG-------  167 (182)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~-~~~~g~~~~-------  167 (182)
                      ....      .........  .........+.+++..+.+.|.+.+++.+..+.++..++... .++++..+.       
T Consensus        76 ~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~  147 (292)
T d1k0ia1          76 EIAF------AGQRRRIDL--KRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGER  147 (292)
T ss_dssp             EEEE------TTEEEEECH--HHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEE
T ss_pred             EEEe------ccccccccc--ccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcE
Confidence            0000      000000000  000011225677888999999999988877666666555443 333333332       


Q ss_pred             -EEeCCEEEecCCC
Q psy2240         168 -IATGDVGIAKDGS  180 (182)
Q Consensus       168 -v~~~~~vi~adG~  180 (182)
                       ....++||+|||.
T Consensus       148 ~~i~a~~vVgADG~  161 (292)
T d1k0ia1         148 LRLDCDYIAGCDGF  161 (292)
T ss_dssp             EEEECSEEEECCCT
T ss_pred             EEEEeCEEEECCCC
Confidence             2347999999996

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.5e-14  Score=102.49  Aligned_cols=154  Identities=18%  Similarity=0.160  Sum_probs=89.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-ccccc-------ChhHHhhhhhhHHhcCCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-SGAVI-------DPIALNELLPDWKDLGAP   91 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~~~~~-------~~~~~~~~~~~~~~~~~~   91 (182)
                      .+++||+|||+|++||++|+.+++      +|.+|+||||.+..++.+. +.+.+       ..+....++.+....+..
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~------~G~~V~lleK~~~~gg~s~~A~GGi~a~~~~~~~Ds~e~~~~Dtl~aG~~   78 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQ------SGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDY   78 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHH------TTCCCEEECSSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHHTS
T ss_pred             cccCCEEEECcCHHHHHHHHHHHH------cCCeEEEEeCCCCCCCcHHHHhhhHheEcCCCCCCCHHHHHHHHHHhhhh
Confidence            468999999999999999999999      8999999999987766543 21111       112222222222222222


Q ss_pred             CCccc--------hhhhHHHHHhhccCCCCCCCC--CCCCCCCc----------------cccchHHHHHHHHHHHHHcC
Q psy2240          92 LNTPV--------HEDKFAYLTKSKRIGIPILPG--MPMNNHGN----------------YVVRLGHVVKWLGEQAEAMG  145 (182)
Q Consensus        92 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------------~~~~~~~l~~~l~~~~~~~g  145 (182)
                      +.++.        .++.+.|+.... ..+....+  +.....+.                .......+...|.+.+++.+
T Consensus        79 l~d~~~v~~l~~~~~~~i~~L~~~G-v~f~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~d~~G~~i~~~L~~~~~~~~  157 (330)
T d1neka2          79 IGDQDAIEYMCKTGPEAILELEHMG-LPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNH  157 (330)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTT-CCCCBCSCBTTBCCCSSBCEEECTTSSSEEEECCTTCHHHHHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHhHHHHHHHhhcc-ccccccCCCceehhccCcccccccCcccccccccCCccHHHHHHHHHHHHHhcC
Confidence            22211        123344443321 22211111  00000000                01123568889999999999


Q ss_pred             cEEecCCccceeEEcCCCcEEE-------------EEeCCEEEecCCC
Q psy2240         146 VEIYPGIPASEVLYHGDGSVKG-------------IATGDVGIAKDGS  180 (182)
Q Consensus       146 v~i~~~~~v~~i~~~~~g~~~~-------------v~~~~~vi~adG~  180 (182)
                      ++++.++.++++..++++.+++             +.+..+|++++|.
T Consensus       158 v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~  205 (330)
T d1neka2         158 TTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA  205 (330)
T ss_dssp             CEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCC
T ss_pred             CeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCc
Confidence            9999999999987766665554             2334566677664

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1e-14  Score=102.41  Aligned_cols=154  Identities=22%  Similarity=0.228  Sum_probs=83.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc-c-cccc----ChhHHhhhhhhHHhcCCCCCc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL-S-GAVI----DPIALNELLPDWKDLGAPLNT   94 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~-~-~~~~----~~~~~~~~~~~~~~~~~~~~~   94 (182)
                      .++||+|||+|++||++|+.+++.    +.|.+|+||||.+..++.+. + ++..    .......++.+....+..+.+
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~----~~g~~V~lleK~~~~~g~s~~A~GGi~a~~~~~Ds~e~~~~dt~~~g~~~~d   79 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQA----NPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCE   79 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH----CTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSC
T ss_pred             eecCEEEECccHHHHHHHHHHHHh----CCCCEEEEEECCCCCCCcHHHHhhhHhhhcCCCCCHHHHHHHHHhhccCccH
Confidence            468999999999999999999982    25789999999987666543 2 2211    112222333333333333332


Q ss_pred             cc--------hhhhHHHHHhhccCCCCCCCC--CCCCCCC------c---cccchHHHHHHHHHH-HHHcCcEEecCCcc
Q psy2240          95 PV--------HEDKFAYLTKSKRIGIPILPG--MPMNNHG------N---YVVRLGHVVKWLGEQ-AEAMGVEIYPGIPA  154 (182)
Q Consensus        95 ~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~---~~~~~~~l~~~l~~~-~~~~gv~i~~~~~v  154 (182)
                      ..        .+..+.|+.... ..+.....  ......+      .   .......+...+.+. ++..+++|+.++++
T Consensus        80 ~~~v~~~~~~~~~~i~~L~~~g-~~f~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~l~~~~~~~~v~i~~~~~v  158 (311)
T d1kf6a2          80 QDVVDYFVHHCPTEMTQLELWG-CPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFV  158 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-CCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEE
T ss_pred             HHHHHHHHHhhhHhHHhhhhcc-cccccccccccccccccccccccccccccchhhHHHHhHHHHHHccCcceeEeeeEe
Confidence            21        122334443221 11111111  0000000      0   011122344444444 44467999999999


Q ss_pred             ceeEEcCCCcEEEEE-------------eCCEEEecCCC
Q psy2240         155 SEVLYHGDGSVKGIA-------------TGDVGIAKDGS  180 (182)
Q Consensus       155 ~~i~~~~~g~~~~v~-------------~~~~vi~adG~  180 (182)
                      ++|.. +++.++|+.             +..+|++++|.
T Consensus       159 ~~Ll~-d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~  196 (311)
T d1kf6a2         159 LDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (311)
T ss_dssp             EEEEE-ETTEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             eeeEe-cCCcceeEEEEEcCCCcEEEEECCEEEEcCCCc
Confidence            99987 446666532             23567777774

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.56  E-value=7.4e-15  Score=100.63  Aligned_cols=38  Identities=24%  Similarity=0.442  Sum_probs=33.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG   65 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g   65 (182)
                      ..+|+||||||+|+++|+.|++      +|++|+||||++.+..
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~------~G~~v~v~Er~~~~~~   41 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRD------AGVDVDVYERSPQPLS   41 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHH------CCCCEEEEeCCCCCCC
Confidence            3479999999999999999999      8999999999876543

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.55  E-value=1.5e-14  Score=100.04  Aligned_cols=131  Identities=17%  Similarity=0.277  Sum_probs=79.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      .++||+|||||++||++|+.|++.     .|++|+|||+.+.+||....++...+...                 .....
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~-----~G~~V~vlE~~~~~GG~~~~~g~~~~~~~-----------------~~~~~   89 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKN-----PNVQVAIIEQSVSPGGGAWLGGQLFSAMI-----------------VRKPA   89 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTS-----TTSCEEEEESSSSCCTTTTCCSTTCCCEE-----------------EETTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHc-----cCCeEEEEecCCCCCCceeecCEEcCHHH-----------------HhhhH
Confidence            478999999999999999999871     49999999999988886655443222111                 00011


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE------------
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI------------  168 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v------------  168 (182)
                      ...+. .....+....     ...........+..++.+.+...+..++.++.+..+.. .++.+.++            
T Consensus        90 ~~~~~-~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~gv~~~~~~~~~~~~  162 (278)
T d1rp0a1          90 HLFLD-EIGVAYDEQD-----TYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHH  162 (278)
T ss_dssp             HHHHH-HHTCCCEECS-----SEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTT
T ss_pred             HHHHH-HcCCceecCC-----ccceecccHHHHHHHHHHHHHhCCCEEEeCCcceeeee-cCCeEEEEEeccceeeeeec
Confidence            11111 1111111110     00122334456667777777777888999988888776 33444433            


Q ss_pred             ---------EeCCEEEecCCC
Q psy2240         169 ---------ATGDVGIAKDGS  180 (182)
Q Consensus       169 ---------~~~~~vi~adG~  180 (182)
                               ..++++|.++|.
T Consensus       163 ~~~~~~~~~~~a~~vv~a~G~  183 (278)
T d1rp0a1         163 TQSCMDPNVMEAKIVVSSCGH  183 (278)
T ss_dssp             TSSCCCCEEEEEEEEEECCCS
T ss_pred             ccccccceeeccceEEECcCC
Confidence                     223678888886

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=1.1e-14  Score=99.19  Aligned_cols=43  Identities=23%  Similarity=0.308  Sum_probs=40.4

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      |+.+|||||||||++|+++|+.|++      +|.+|+||||++.+||..
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~------~G~~V~vlE~~~~~GG~~   44 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSV------DGKKVLHIDKQDHYGGEA   44 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCGGG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH------CCCCEEEEcCCCCCCcce
Confidence            6778999999999999999999999      899999999999998865

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.3e-13  Score=96.53  Aligned_cols=42  Identities=33%  Similarity=0.628  Sum_probs=34.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ++++||||||+|++||++|+.+++      .| +|+||||.+..+|.+.
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~------~g-~V~llEK~~~~gG~s~   46 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLAD------QH-QVIVLSKGPVTEGSTF   46 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT------TS-CEEEECSSCTTC----
T ss_pred             cccCCEEEECccHHHHHHHHHhhc------CC-CEEEEECCCCCCCchH
Confidence            567999999999999999999987      67 9999999998777653

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.48  E-value=1.6e-14  Score=99.79  Aligned_cols=36  Identities=36%  Similarity=0.672  Sum_probs=33.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEVG   64 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~~   64 (182)
                      .||+|||||++||++|+.|++      .|+ +|+|+||.+.+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~------~Gi~~V~V~Er~~~~~   38 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQ------AGIGKVTLLESSSEIR   38 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCSEEEEEESSSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHh------CCCCeEEEEeCCCCCC
Confidence            589999999999999999999      896 999999998765

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=4e-13  Score=86.35  Aligned_cols=79  Identities=25%  Similarity=0.418  Sum_probs=59.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      ...+|+||||||+||++|+.|++      +|++|+|+|+.+.+||....                  .            
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~------~G~~Vtl~E~~~~~GG~l~~------------------~------------   85 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAA------RGHQVTLFDAHSEIGGQFNI------------------A------------   85 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT------TTCEEEEEESSSSSCTTHHH------------------H------------
T ss_pred             CCcEEEEECccHHHHHHHHHHHh------hccceEEEeccCccCceEEE------------------E------------
Confidence            44689999999999999999999      89999999999998863210                  0            


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccce
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASE  156 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~  156 (182)
                             ..  .+..            -...++.+++.+.+++.|++|++|+.|+.
T Consensus        86 -------~~--~p~~------------~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~  120 (179)
T d1ps9a3          86 -------KQ--IPGK------------EEFYETLRYYRRMIEVTGVTLKLNHTVTA  120 (179)
T ss_dssp             -------TT--STTC------------TTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred             -------Ee--Cccc------------chHHHHHHHHHHhhhcCCeEEEeCCEEcc
Confidence                   00  0000            01136677888888889999999999865

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.45  E-value=6.2e-14  Score=95.73  Aligned_cols=40  Identities=23%  Similarity=0.377  Sum_probs=34.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      ...+|+|||||++||++|+.|++      +|.+|+||||.....+.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~------~G~~V~vier~~~~~~~   44 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILAR------KGYSVHILARDLPEDVS   44 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSCTTCTT
T ss_pred             CCCcEEEECccHHHHHHHHHHHH------CCCCEEEEeCCCCCCCc
Confidence            34589999999999999999999      89999999998754443

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.40  E-value=7.1e-12  Score=89.17  Aligned_cols=46  Identities=39%  Similarity=0.411  Sum_probs=37.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..++||||||+|++||++|+.|++.+.+  +|++|+||||.+..++.+
T Consensus        19 ~~e~DVlIIG~G~AGl~AA~~aa~~~~~--~G~~V~vieK~~~~gg~s   64 (356)
T d1jnra2          19 VVETDILIIGGGFSGCGAAYEAAYWAKL--GGLKVTLVEKAAVERSGA   64 (356)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTT--TTCCEEEECSSCTTTCST
T ss_pred             EEecCEEEECCCHHHHHHHHHHHHHHHh--CcCEEEEEeCCCCCCChh
Confidence            3468999999999999999999864322  589999999998776544

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=2.4e-13  Score=91.36  Aligned_cols=49  Identities=43%  Similarity=0.667  Sum_probs=42.0

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccccc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVI   73 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~   73 (182)
                      |.++|||+||||||+|+++|+.|++      .|.+|+|||+.+..||.....+++
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~------~G~kV~lie~~~~~GG~~~~~g~~   50 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQ------LGFNTACVEKRGKLGGTCLNVGCI   50 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESSSSSSHHHHHHSHH
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHH------CCCcEEEEEecCCcceEeEEeecc
Confidence            5678999999999999999999999      899999999988888755443443

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.36  E-value=4.2e-12  Score=86.72  Aligned_cols=49  Identities=37%  Similarity=0.626  Sum_probs=41.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL   78 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~   78 (182)
                      ||++|||||++|+++|..+++      .|.+|+|+|+.. .||....-++++++.+
T Consensus         2 yDviVIG~G~aG~~aA~~aa~------~G~~V~liE~~~-~GGtc~n~gciPsK~l   50 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAAR------HNAKVALVEKSR-LGGTCVNVGCVPKKIM   50 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH------TTCCEEEEESSS-TTHHHHHTSHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHH------CCCeEEEEecCC-CCCeEEeeCCcchHHH
Confidence            799999999999999999999      899999999974 6766555566655544

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=6.9e-13  Score=88.26  Aligned_cols=50  Identities=26%  Similarity=0.422  Sum_probs=39.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA   77 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~   77 (182)
                      +.|||+|||||++|+++|..+++      .|.+|+|||++ ..||.....++.....
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~------~G~kV~iiE~~-~~GGtc~~~gc~p~k~   50 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAM------YGQKCALIEAK-ELGGTCVNVGCVPKKV   50 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT------TTCCEEEEESS-CTTHHHHHHSHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH------CCCEEEEEecc-CcCCeEeccccccccc
Confidence            46899999999999999999999      89999999996 4676544444444333

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=2.5e-12  Score=86.54  Aligned_cols=38  Identities=29%  Similarity=0.429  Sum_probs=34.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      .+|||+||||||+|+++|+.+++      .|++|+|||+.+..+
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~------~G~kV~viE~~~~~~   39 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAK------FDKKVMVLDFVTPTP   39 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGG------GCCCEEEECCCCCCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCCCC
Confidence            47999999999999999999999      899999999987543

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.30  E-value=9e-13  Score=88.45  Aligned_cols=49  Identities=39%  Similarity=0.634  Sum_probs=41.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID   74 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~   74 (182)
                      +.+|||+||||||+|+++|+.|++      .|++|+|||+.+..||.....+++.
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~------~G~~V~viE~~~~~GG~~~~~g~~~   52 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAAD------EGLKVAIVERYKTLGGVCLNVGCIP   52 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH------TTCCEEEEESSSCSSHHHHHHSHHH
T ss_pred             CCccCEEEECcCHHHHHHHHHHHH------CCCeEEEEeccCCCCCeeeccccch
Confidence            467999999999999999999999      8999999999988887554444443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.8e-12  Score=91.91  Aligned_cols=42  Identities=36%  Similarity=0.628  Sum_probs=38.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ++.+|+|||||++||++|+.|++      +|++|+|||+++.+||...
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~------~G~~V~VlEa~~r~GGr~~   45 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQS------FGMDVTLLEARDRVGGRVA   45 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHH------TTCEEEEECSSSSSBTTCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh------CCCCEEEEeCCCCCcccEE
Confidence            45689999999999999999999      8999999999999998654

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=6.1e-11  Score=78.57  Aligned_cols=35  Identities=34%  Similarity=0.526  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|||||||||++|+.+|+.++|      .|.+++|||++..
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR------~G~ktllit~~~~   36 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQ------KGVRVGLLTQSLD   36 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH------TTCCEEEEESCGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHH------CCCcEEEEEeccc
Confidence            5899999999999999999999      8999999998753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.2e-10  Score=69.64  Aligned_cols=89  Identities=22%  Similarity=0.131  Sum_probs=66.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||++|+-+|..|++      .|.+|+|+|+.+....                                     
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~------~G~~Vtlve~~~~~l~-------------------------------------   58 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVING------LGAKTHLFEMFDAPLP-------------------------------------   58 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSST-------------------------------------
T ss_pred             CEEEEECCChhhHHHHHHhhc------cccEEEEEeecchhhh-------------------------------------
Confidence            369999999999999999999      8999999999865320                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------EEeCCEEEe
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------IATGDVGIA  176 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------v~~~~~vi~  176 (182)
                                 .             ++ ..+.+.+.+.+++.|++++++++|+++..++++.+..      ....|.||.
T Consensus        59 -----------~-------------~d-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~  113 (116)
T d1gesa2          59 -----------S-------------FD-PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIW  113 (116)
T ss_dssp             -----------T-------------SC-HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEE
T ss_pred             -----------h-------------cc-hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEE
Confidence                       0             00 1466777788888899999999999998866654431      122356666


Q ss_pred             cCC
Q psy2240         177 KDG  179 (182)
Q Consensus       177 adG  179 (182)
                      |-|
T Consensus       114 a~G  116 (116)
T d1gesa2         114 AIG  116 (116)
T ss_dssp             CSC
T ss_pred             ecC
Confidence            554

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.26  E-value=2.4e-12  Score=88.24  Aligned_cols=39  Identities=31%  Similarity=0.676  Sum_probs=35.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCCCCcc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEVGGHI   67 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~~g~~   67 (182)
                      .||+|||||++||++|+.|++      +|+ +|+||||++.+||..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~------~G~~~V~vlE~~~~~GG~~   40 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSE------AGITDLLILEATDHIGGRM   40 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHH------TTCCCEEEECSSSSSBTTS
T ss_pred             CCEEEECCcHHHHHHHHHHHh------CCCCcEEEEECCCCCCceE
Confidence            389999999999999999999      896 699999999988764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.26  E-value=4.5e-11  Score=77.91  Aligned_cols=95  Identities=22%  Similarity=0.226  Sum_probs=61.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhh
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDK  100 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (182)
                      ..+||+|||||++|+++|+.|+|      .|++|+|+|+.........  +.+            ...            
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar------~g~~v~vie~~~~~~~~~~--~~~------------~~~------------   51 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAAR------AELKPLLFEGWMANDIAPG--GQL------------TTT------------   51 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH------TTCCCEEECCSSBTTBCTT--CGG------------GGC------------
T ss_pred             ccceEEEECCCHHHHHHHHHHHH------cCCcEEEEEeecccccccc--ccc------------ccc------------
Confidence            45799999999999999999999      8999999998764331110  000            000            


Q ss_pred             HHHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCC
Q psy2240         101 FAYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDG  163 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g  163 (182)
                            ..   ......      ........++...+.+.+++.|+++..+ .|+++....+.
T Consensus        52 ------~~---~~~~~~------~~~~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~   98 (192)
T d1vdca1          52 ------TD---VENFPG------FPEGILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSSKP   98 (192)
T ss_dssp             ------SE---ECCSTT------CTTCEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSSSS
T ss_pred             ------hh---hhcccc------ccccccchHHHHHHHHHHHhhcceeeee-eEEecccccCc
Confidence                  00   000000      0222445678888888898899999866 68887654443

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.26  E-value=2.7e-12  Score=85.54  Aligned_cols=46  Identities=43%  Similarity=0.681  Sum_probs=39.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAV   72 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~   72 (182)
                      .+|||+||||||+|+++|+.+++      .|.+|+|||+.+..||.....++
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~------~G~kV~vie~~~~~GG~~~~~~~   47 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQ------LGFKTTCIEKRGALGGTCLNVGC   47 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH------HTCCEEEEECSSSSCCSHHHHSH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH------CCCcEEEEEecCCCCCeeecchh
Confidence            46999999999999999999999      79999999999888876543333

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=2e-12  Score=90.09  Aligned_cols=40  Identities=38%  Similarity=0.549  Sum_probs=37.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      +||+|||||++||++|+.|++      .|.+|+|||+++..||...
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~------~g~~V~iiEk~~~iGG~~~   41 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKK------LNKKVLVIEKRNHIGGNAY   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGG------GTCCEEEECSSSSSSGGGC
T ss_pred             ccEEEECCcHHHHHHHHHHHh------CCCcEEEEECCCCcccceE
Confidence            699999999999999999999      7999999999999998653

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.5e-12  Score=90.56  Aligned_cols=38  Identities=50%  Similarity=0.754  Sum_probs=36.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ||+|||||++||++|+.|++      +|++|+|||+++.+||..
T Consensus         1 DViVIGaG~aGL~aA~~L~~------~G~~V~VlE~~~~~GGr~   38 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHD------SGLNVVVLEARDRVGGRT   38 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHH------TTCCEEEEESSSSSBTTC
T ss_pred             CEEEECCCHHHHHHHHHHHh------CCCCEEEEecCCCCccee
Confidence            89999999999999999999      899999999999998855

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.24  E-value=3.1e-12  Score=89.03  Aligned_cols=38  Identities=37%  Similarity=0.719  Sum_probs=36.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ||+|||||++||++|+.|++      +|++|+||||++.+||..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~------~G~~V~vlE~~~~~GG~~   39 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRS------RGTDAVLLESSARLGGAV   39 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHT------TTCCEEEECSSSSSBTTC
T ss_pred             eEEEECCCHHHHHHHHHHHh------CCCCEEEEecCCCCCceE
Confidence            79999999999999999999      899999999999998864

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.22  E-value=1.2e-10  Score=83.01  Aligned_cols=34  Identities=44%  Similarity=0.653  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .||+||||+|.+|+.+|..|++      .|.+|+|||+++
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae------~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSE------AGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhh------CCCeEEEEEccC
Confidence            6899999999999999999999      899999999984

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=1.2e-10  Score=75.73  Aligned_cols=36  Identities=28%  Similarity=0.526  Sum_probs=33.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +..||+|||||++|+++|+.|++      .|++|+|||+.+.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar------~g~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAAR------ANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT------TTCCCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH------cCCceEEEEeecc
Confidence            45799999999999999999999      8999999998764

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.21  E-value=5.8e-12  Score=84.10  Aligned_cols=41  Identities=39%  Similarity=0.600  Sum_probs=36.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      +.|||+||||||+|+++|+.|++      .|++|+|||+....++..
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar------~G~~V~viE~~~~~~~~~   42 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQ------LGLKTALIEKYKGKEGKT   42 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH------HTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH------CCCeEEEEecccCCCccc
Confidence            57999999999999999999999      899999999987655443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.19  E-value=9.8e-12  Score=86.70  Aligned_cols=38  Identities=37%  Similarity=0.678  Sum_probs=35.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      +|+|||||++||++|+.|++      +|++|+|||+++.+||..
T Consensus         3 kV~IIGaG~aGL~aA~~La~------~G~~V~vlE~~~~~GG~~   40 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKI------HGLNVTVFEAEGKAGGKL   40 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHT------TSCEEEEECSSSSSCSSC
T ss_pred             EEEEECcCHHHHHHHHHHHh------CCCCEEEEeCCCCCcCce
Confidence            59999999999999999999      899999999999998864

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.19  E-value=9.4e-12  Score=87.72  Aligned_cols=40  Identities=38%  Similarity=0.551  Sum_probs=36.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..+|+|||||++||++|+.|++      +|++|+|||+.+.+||..
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~------~G~~V~vlE~~~~~GG~~   69 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAG------AGHQVTVLEASERPGGRV   69 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHH------HTCEEEEECSSSSSBTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHH------CCCCEEEEeCCCCCCCee
Confidence            3589999999999999999999      899999999999988854

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.17  E-value=4.9e-10  Score=67.00  Aligned_cols=76  Identities=21%  Similarity=0.297  Sum_probs=60.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      .+++|||||+.|+-+|..|++      .|.+|+|+|+.+.....                                    
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~------~G~~Vtlve~~~~il~~------------------------------------   60 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYAN------FGTKVTILEGAGEILSG------------------------------------   60 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSSSSTT------------------------------------
T ss_pred             CeEEEECCCccceeeeeeecc------cccEEEEEEecceeccc------------------------------------
Confidence            479999999999999999999      89999999988754200                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK  166 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~  166 (182)
                                               ++ .++.+.+.+.+++.|++++++++|++++.++++..+
T Consensus        61 -------------------------~d-~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v   98 (117)
T d1ebda2          61 -------------------------FE-KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTV   98 (117)
T ss_dssp             -------------------------SC-HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEE
T ss_pred             -------------------------cc-chhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEE
Confidence                                     00 146677778888899999999999999876655433

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.16  E-value=3.4e-11  Score=85.99  Aligned_cols=40  Identities=33%  Similarity=0.388  Sum_probs=36.3

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      |+.+||+||||+|++|+++|..|++      +|++|+|||++....
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~------~G~kVlvLEaG~~~~   40 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVG------AGYKVAMFDIGEIDS   40 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSCCCS
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhh------CCCeEEEEecCCCCC
Confidence            4678999999999999999999999      899999999986543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.16  E-value=7.4e-10  Score=67.64  Aligned_cols=91  Identities=24%  Similarity=0.335  Sum_probs=65.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      ..+++|||||++|+-+|..|++      .|.+|+++|+.+.+....                                  
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~------~g~~Vtvie~~~~~l~~~----------------------------------   74 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIK------ANMHVTLLDTAARVLERV----------------------------------   74 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSTTTTT----------------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHh------hCcceeeeeecccccccc----------------------------------
Confidence            3579999999999999999999      899999999987542100                                  


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCC-CcEEEEE-------eCCE
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIA-------TGDV  173 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~-g~~~~v~-------~~~~  173 (182)
                                +                 ...+.+.+.+.+++.|++++++++|+.++...+ +.+..+.       ..|.
T Consensus        75 ----------~-----------------~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~  127 (133)
T d1q1ra2          75 ----------T-----------------APPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADL  127 (133)
T ss_dssp             ----------S-----------------CHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSE
T ss_pred             ----------c-----------------chhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCE
Confidence                      0                 013455666777888999999999999987543 3344333       3466


Q ss_pred             EEecCC
Q psy2240         174 GIAKDG  179 (182)
Q Consensus       174 vi~adG  179 (182)
                      ||-|-|
T Consensus       128 vi~a~G  133 (133)
T d1q1ra2         128 VIAGIG  133 (133)
T ss_dssp             EEECCC
T ss_pred             EEEeeC
Confidence            665544

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.15  E-value=9.4e-10  Score=65.87  Aligned_cols=76  Identities=13%  Similarity=0.148  Sum_probs=60.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      .+++|||||..|+-+|..|++      .|.+|+++|+.+.....                                    
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~------~G~~Vtiv~~~~~ll~~------------------------------------   60 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWAR------LGAEVTVLEAMDKFLPA------------------------------------   60 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSSSSTT------------------------------------
T ss_pred             CeEEEECCChHHHHHHHHHHH------cCCceEEEEeecccCCc------------------------------------
Confidence            479999999999999999999      89999999988653200                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK  166 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~  166 (182)
                               +                + .++.+.+.+.+++.|++++.++++++++.++++..+
T Consensus        61 ---------~----------------d-~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v   98 (119)
T d3lada2          61 ---------V----------------D-EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTV   98 (119)
T ss_dssp             ---------S----------------C-HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEE
T ss_pred             ---------c----------------c-chhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEE
Confidence                     0                0 146677777888899999999999999886655433

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=9.2e-10  Score=66.20  Aligned_cols=76  Identities=21%  Similarity=0.281  Sum_probs=61.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||+.|+-+|-.|++      .|.+|+|+|+.+.+..                                     
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~------lG~~Vtii~~~~~~l~-------------------------------------   60 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSR------LGSKVTVVEFQPQIGA-------------------------------------   60 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSSS-------------------------------------
T ss_pred             CeEEEECCCchHHHHHHHHHh------hCcceeEEEeccccch-------------------------------------
Confidence            479999999999999999999      8999999998765320                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK  166 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~  166 (182)
                                 .             ++ ..+.+.+.+.+++.|++|+++++|++++.++++..+
T Consensus        61 -----------~-------------~d-~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v   99 (122)
T d1v59a2          61 -----------S-------------MD-GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVV   99 (122)
T ss_dssp             -----------S-------------SC-HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEE
T ss_pred             -----------h-------------hh-hhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEE
Confidence                       0             00 246777788888899999999999999887776544

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.13  E-value=1.5e-09  Score=64.78  Aligned_cols=76  Identities=13%  Similarity=0.151  Sum_probs=61.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||+.|+-+|..|++      .|.+|+|+|+.+....                                     
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~------~g~~Vtlv~~~~~il~-------------------------------------   59 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKR------LGIDSYIFARGNRILR-------------------------------------   59 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHT------TTCEEEEECSSSSSCT-------------------------------------
T ss_pred             CEEEEECCchHHHHHHHHHHh------ccccceeeehhccccc-------------------------------------
Confidence            469999999999999999999      8999999998764310                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK  166 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~  166 (182)
                                 .             ++ ..+.+.+.+.+++.|++++++++|++++..+++.+.
T Consensus        60 -----------~-------------~d-~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~   98 (117)
T d1onfa2          60 -----------K-------------FD-ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLS   98 (117)
T ss_dssp             -----------T-------------SC-HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEE
T ss_pred             -----------c-------------cc-HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEE
Confidence                       0             00 256778888888899999999999999876666543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.12  E-value=3.7e-11  Score=84.12  Aligned_cols=39  Identities=26%  Similarity=0.538  Sum_probs=36.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      ..|+|||||++||++|+.|++      .|.+|+|||+++.+||..
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k------~G~~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAE------KGHQVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT------TTCEEEEEESSSSSSGGG
T ss_pred             CEEEEECCcHHHHHHHHHHHh------CCCCEEEEECCCCCcCee
Confidence            469999999999999999999      899999999999999865

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.5e-09  Score=65.60  Aligned_cols=74  Identities=24%  Similarity=0.158  Sum_probs=59.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++|+.+....                                     
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~------~G~~Vtlv~~~~~~l~-------------------------------------   59 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSA------LGSKTSLMIRHDKVLR-------------------------------------   59 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSSCT-------------------------------------
T ss_pred             CEEEEEcCCccHHHHHHHHhc------CCcEEEEEeecccccc-------------------------------------
Confidence            479999999999999999999      8999999999764310                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCc
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGS  164 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~  164 (182)
                                 .             ++ ..+.+.+.+.+++.|++++.++++++++.++++.
T Consensus        60 -----------~-------------~d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~   96 (125)
T d3grsa2          60 -----------S-------------FD-SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGL   96 (125)
T ss_dssp             -----------T-------------SC-HHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEE
T ss_pred             -----------c-------------hh-hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeE
Confidence                       0             00 1466777788888999999999999998866664

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.11  E-value=8.2e-10  Score=66.54  Aligned_cols=70  Identities=23%  Similarity=0.268  Sum_probs=56.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||+.|+-+|..|++      .|.+|+++|+.+.+-.                                     
T Consensus        31 k~vvViGgG~iG~E~A~~l~~------~g~~Vtlie~~~~~l~-------------------------------------   67 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAK------AGKKVTVIDILDRPLG-------------------------------------   67 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSSTTT-------------------------------------
T ss_pred             CEEEEECChHHHHHHHHHhhc------cceEEEEEEecCcccc-------------------------------------
Confidence            479999999999999999999      8999999999764310                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLY  159 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~  159 (182)
                                             ..++ ..+.+.+.+.+++.|+++++++++++++.
T Consensus        68 -----------------------~~~d-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~  100 (123)
T d1nhpa2          68 -----------------------VYLD-KEFTDVLTEEMEANNITIATGETVERYEG  100 (123)
T ss_dssp             -----------------------TTCC-HHHHHHHHHHHHTTTEEEEESCCEEEEEC
T ss_pred             -----------------------cccc-hhhHHHHHHHhhcCCeEEEeCceEEEEEc
Confidence                                   0001 14566777778889999999999999975

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.11  E-value=2.2e-09  Score=64.44  Aligned_cols=89  Identities=15%  Similarity=0.246  Sum_probs=67.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-.|..|++      .|.+|+++|+.+.....                                    
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~------~g~~vt~i~~~~~~l~~------------------------------------   60 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNA------TGRRTVMLVRTEPLKLI------------------------------------   60 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSCTTTTC------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHh------cchhheEeeccchhhcc------------------------------------
Confidence            479999999999999999999      89999999987643200                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE----------EeCC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI----------ATGD  172 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v----------~~~~  172 (182)
                               +                + ..+.+.+.+.+++.|++++++++++.++.++++.+..+          ...|
T Consensus        61 ---------~----------------d-~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D  114 (121)
T d1mo9a2          61 ---------K----------------D-NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETD  114 (121)
T ss_dssp             ---------C----------------S-HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECS
T ss_pred             ---------c----------------c-cchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcC
Confidence                     0                0 13456667777888999999999999998777765432          2346


Q ss_pred             EEEecCC
Q psy2240         173 VGIAKDG  179 (182)
Q Consensus       173 ~vi~adG  179 (182)
                      .||.|-|
T Consensus       115 ~Vi~a~G  121 (121)
T d1mo9a2         115 FVFLGLG  121 (121)
T ss_dssp             CEEECCC
T ss_pred             EEEEEEC
Confidence            6666654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.11  E-value=1.6e-09  Score=64.93  Aligned_cols=88  Identities=20%  Similarity=0.300  Sum_probs=63.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhH
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKF  101 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (182)
                      ...++|||||++|+-+|..|++      .|.+|+++|+.+.+-..                                   
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~------~g~~Vtli~~~~~~l~~-----------------------------------   68 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATART------AGVHVSLVETQPRLMSR-----------------------------------   68 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSSSTTTT-----------------------------------
T ss_pred             CCeEEEECcchhHHHHHHHhhc------ccceEEEEeeccccccc-----------------------------------
Confidence            3579999999999999999999      89999999988643100                                   


Q ss_pred             HHHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE----EEEeCCEEEec
Q psy2240         102 AYLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK----GIATGDVGIAK  177 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~----~v~~~~~vi~a  177 (182)
                                               .++ ..+.+.+.+.++++|++++++++|+++..   +.+.    .....|.||.|
T Consensus        69 -------------------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~~~~---~~v~l~dg~~i~~D~vi~a  119 (121)
T d1d7ya2          69 -------------------------AAP-ATLADFVARYHAAQGVDLRFERSVTGSVD---GVVLLDDGTRIAADMVVVG  119 (121)
T ss_dssp             -------------------------TSC-HHHHHHHHHHHHTTTCEEEESCCEEEEET---TEEEETTSCEEECSEEEEC
T ss_pred             -------------------------cCC-HHHHHHHHHHHHHCCcEEEeCCEEEEEeC---CEEEECCCCEEECCEEEEe
Confidence                                     000 24566777788889999999999987642   2222    13456777766


Q ss_pred             CC
Q psy2240         178 DG  179 (182)
Q Consensus       178 dG  179 (182)
                      -|
T Consensus       120 ~G  121 (121)
T d1d7ya2         120 IG  121 (121)
T ss_dssp             SC
T ss_pred             eC
Confidence            55

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.11  E-value=4.1e-11  Score=84.96  Aligned_cols=65  Identities=28%  Similarity=0.292  Sum_probs=43.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH--HhhhhhhHH
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA--LNELLPDWK   86 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~--~~~~~~~~~   86 (182)
                      +..|||+||||||+||++|..|++....+ .|++|+||||.+.+.... .+..+.+..  +++.++.|.
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~-~G~~v~vlEr~~~~~~~~-r~~~l~~~~~~~L~~lGl~~   71 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQK-PDLKVRIIDKRSTKVYNG-QADGLQCRTLESLKNLGLAD   71 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHS-TTCCEEEECSSSSCCCSC-SCCEECHHHHHHHHTTTCHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhccccc-CCCcEEEEcCCCCCCcCC-eEEEECHHHHHHHHHcCChH
Confidence            34589999999999999999997421111 699999999998665322 233344433  334444444

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.10  E-value=4.4e-10  Score=67.75  Aligned_cols=78  Identities=21%  Similarity=0.244  Sum_probs=61.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-.|..+++      .|.+|+|+|+.+.....                                    
T Consensus        26 ~~~viiG~G~iglE~A~~~~~------~G~~Vtvi~~~~~~l~~------------------------------------   63 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGR------IGSEVTVVEFASEIVPT------------------------------------   63 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHH------HTCEEEEECSSSSSSTT------------------------------------
T ss_pred             CeEEEEccchHHHHHHHHHHh------cCCeEEEEEEccccCch------------------------------------
Confidence            479999999999999999999      79999999998653200                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI  168 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v  168 (182)
                                               .+ ..+...|.+.+++.|++|+.++++++++.++++..+.+
T Consensus        64 -------------------------~d-~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~  103 (123)
T d1dxla2          64 -------------------------MD-AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTV  103 (123)
T ss_dssp             -------------------------SC-HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEE
T ss_pred             -------------------------hh-hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEE
Confidence                                     00 14667777888889999999999999987666654443

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.10  E-value=1.5e-09  Score=64.77  Aligned_cols=93  Identities=22%  Similarity=0.166  Sum_probs=66.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||++|+-+|..|+++.   ..|.+|+++|+.+....                                     
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~---~~g~~Vtli~~~~~il~-------------------------------------   58 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYK---ARGGQVDLAYRGDMILR-------------------------------------   58 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHS---CTTCEEEEEESSSSSST-------------------------------------
T ss_pred             CeEEEECCChHHHHHHHHhHhhc---ccccccceecccccccc-------------------------------------
Confidence            46999999999999998777631   14789999998764320                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE------EEeCCEEEe
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG------IATGDVGIA  176 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~------v~~~~~vi~  176 (182)
                                 .             ++ .++.+.+.+.+++.|+++++++.+++++.++++....      ....|.||-
T Consensus        59 -----------~-------------~d-~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~  113 (117)
T d1feca2          59 -----------G-------------FD-SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVML  113 (117)
T ss_dssp             -----------T-------------SC-HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEE
T ss_pred             -----------c-------------cc-chhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEE
Confidence                       0             00 1466777788888999999999999998766665432      223477777


Q ss_pred             cCCC
Q psy2240         177 KDGS  180 (182)
Q Consensus       177 adG~  180 (182)
                      |-|+
T Consensus       114 a~GR  117 (117)
T d1feca2         114 AIGR  117 (117)
T ss_dssp             CSCE
T ss_pred             ecCC
Confidence            6663

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.09  E-value=6e-10  Score=80.03  Aligned_cols=35  Identities=31%  Similarity=0.636  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~   61 (182)
                      ++||+||||||.+|+.+|..|++      .+ .+|+|||+++
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse------~~~~~VLvLEaG~   51 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTE------NPNISVLVIESGS   51 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTT------STTCCEEEEESSC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHH------CCCCeEEEECCCC
Confidence            46999999999999999999998      54 8999999985

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.08  E-value=8.9e-12  Score=84.00  Aligned_cols=48  Identities=19%  Similarity=0.283  Sum_probs=34.5

Q ss_pred             ccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEEEeCCEEEecCC
Q psy2240         125 NYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGIATGDVGIAKDG  179 (182)
Q Consensus       125 ~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v~~~~~vi~adG  179 (182)
                      ..++++..+..+|.+.+++.|++|+.. +|++++...+      ...++||.|.|
T Consensus       136 ~~~id~~~~~~~L~~~~~~~G~~~~~~-~v~~l~~~~~------~~~d~vVnctG  183 (246)
T d1kifa1         136 SLILEGRKYLQWLTERLTERGVKFFLR-KVESFEEVAR------GGADVIINCTG  183 (246)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEEEC-CCCCHHHHHH------TTCSEEEECCG
T ss_pred             ceEEcHHHHHHHHHHHHHHCCCEEEEe-EeCCHHHhcc------CCCCEEEECCc
Confidence            557899999999999999999998875 5777643111      11356666665

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.08  E-value=1.5e-09  Score=65.32  Aligned_cols=86  Identities=24%  Similarity=0.399  Sum_probs=62.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      .+++|||||++|+-+|..|++      .|.+|+++|+.+...+                                     
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~------~g~~Vtlv~~~~~l~~-------------------------------------   69 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAE------AGYHVKLIHRGAMFLG-------------------------------------   69 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHH------TTCEEEEECSSSCCTT-------------------------------------
T ss_pred             CcEEEECCcHHHHHHHHHhhc------ccceEEEEeccccccC-------------------------------------
Confidence            479999999999999999999      8999999998754210                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE--EEEeCCEEEecCC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK--GIATGDVGIAKDG  179 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~--~v~~~~~vi~adG  179 (182)
                               +                + ..+.+.+.+.+++.|+++++++++++++.  ++...  +....|.+|.|-|
T Consensus        70 ---------~----------------d-~~~~~~~~~~l~~~GV~~~~~~~v~~~~~--~~v~~~~~~i~~D~vi~a~G  120 (122)
T d1xhca2          70 ---------L----------------D-EELSNMIKDMLEETGVKFFLNSELLEANE--EGVLTNSGFIEGKVKICAIG  120 (122)
T ss_dssp             ---------C----------------C-HHHHHHHHHHHHHTTEEEECSCCEEEECS--SEEEETTEEEECSCEEEECC
T ss_pred             ---------C----------------C-HHHHHHHHHHHHHCCcEEEeCCEEEEEeC--CEEEeCCCEEECCEEEEEEE
Confidence                     0                0 13455566677788999999999998853  33211  2344577776665

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.07  E-value=4.3e-11  Score=79.60  Aligned_cols=51  Identities=39%  Similarity=0.550  Sum_probs=39.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhH
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIA   77 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~   77 (182)
                      ..++|++|||||++|+++|+.+++      .|.+|+|+|+.+ .||....-+++....
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~------~G~~V~liE~~~-~GG~c~~~gc~p~k~   53 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQ------LGIPTVLVEGQA-LGGTCLNIGCIPSKA   53 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHH------HTCCEEEECSSC-TTHHHHHHSHHHHHH
T ss_pred             ccccCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCC-CCCcccccccccchh
Confidence            357899999999999999999999      799999999874 565444444443333

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.07  E-value=1.6e-10  Score=77.50  Aligned_cols=43  Identities=37%  Similarity=0.627  Sum_probs=38.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ....+|+|||||++|+++|..|++      +|++|+|+|+.+..+|...
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~------~G~~v~l~E~~~~~GG~~~   89 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLME------SGYTVHLTDTAEKIGGHLN   89 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSSSTTTTHH
T ss_pred             cCCceEEEEcccHHHHHHHHHHHH------hccceeeEeeccccCCccc
Confidence            345799999999999999999999      8999999999999887654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.06  E-value=7.4e-11  Score=78.41  Aligned_cols=39  Identities=44%  Similarity=0.655  Sum_probs=34.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGH   66 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~   66 (182)
                      .++|++||||||+|+++|..+++      .|.+|+|||+.. .||.
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar------~G~kV~vIEk~~-~GG~   40 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQ------LGQKVTIVEKGN-LGGV   40 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH------TTCCEEEEESSC-TTHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH------CCCEEEEEecCC-CCcc
Confidence            46899999999999999999999      899999999975 4543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=7.2e-11  Score=76.25  Aligned_cols=33  Identities=45%  Similarity=0.651  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      .|||+|||||++|+++|+.+++      .|.+|+|||++
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar------~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSAR------KGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHT------TTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHH------cCCeEEEEEEe
Confidence            3899999999999999999999      89999999975

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.05  E-value=1.3e-09  Score=65.80  Aligned_cols=89  Identities=19%  Similarity=0.161  Sum_probs=67.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||..|+-+|..+++      .|.+|+++|+.+.....                                    
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~------~G~~Vtive~~~~il~~------------------------------------   64 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYST------LGSRLDVVEMMDGLMQG------------------------------------   64 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHH------HTCEEEEECSSSSSSTT------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHhhc------CCCEEEEEEeecccccc------------------------------------
Confidence            479999999999999999999      79999999997643210                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEEE---------EeCCE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKGI---------ATGDV  173 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~v---------~~~~~  173 (182)
                               +                + ..+.+.+.+.+++.|++++.++++++++.++++..+.+         ...|.
T Consensus        65 ---------~----------------d-~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~  118 (125)
T d1ojta2          65 ---------A----------------D-RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDA  118 (125)
T ss_dssp             ---------S----------------C-HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESC
T ss_pred             ---------c----------------h-hhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCE
Confidence                     0                0 15677788888889999999999999987666654432         22355


Q ss_pred             EEecCC
Q psy2240         174 GIAKDG  179 (182)
Q Consensus       174 vi~adG  179 (182)
                      ++.|-|
T Consensus       119 vl~A~G  124 (125)
T d1ojta2         119 VLVAAG  124 (125)
T ss_dssp             EEECCC
T ss_pred             EEEecC
Confidence            666655

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=1.1e-10  Score=81.63  Aligned_cols=47  Identities=38%  Similarity=0.695  Sum_probs=39.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcccccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGA   71 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~   71 (182)
                      .++||+||||||+|+++|+.|++.    .+|++|+|+|+.+.++|....++
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~   95 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKN----RPDLKVCIIESSVAPGGGSWLGG   95 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHH----CTTSCEEEECSSSSCCTTTTCCG
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHh----CCCCeEEEEEcCCCCcceeEecC
Confidence            357999999999999999999971    15899999999999888765443

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.04  E-value=1.9e-09  Score=64.11  Aligned_cols=68  Identities=19%  Similarity=0.307  Sum_probs=54.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      .+++|||||+.|+-+|..|++      .|.+|+|+|+.+....                                     
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~------~g~~Vtlve~~~~il~-------------------------------------   58 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRK------LGAQVSVVEARERILP-------------------------------------   58 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------HTCEEEEECSSSSSST-------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHhh------cccceEEEeeeccccc-------------------------------------
Confidence            479999999999999999999      7999999998764310                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVL  158 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~  158 (182)
                                 .             ++ .++.+.+.+.+++.|++++.+++|+++.
T Consensus        59 -----------~-------------~d-~~~~~~l~~~l~~~gV~i~~~~~V~~i~   89 (115)
T d1lvla2          59 -----------T-------------YD-SELTAPVAESLKKLGIALHLGHSVEGYE   89 (115)
T ss_dssp             -----------T-------------SC-HHHHHHHHHHHHHHTCEEETTCEEEEEE
T ss_pred             -----------c-------------cc-chhHHHHHHHHHhhcceEEcCcEEEEEc
Confidence                       0             00 1456677777888899999999999884

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1e-10  Score=77.70  Aligned_cols=40  Identities=30%  Similarity=0.559  Sum_probs=34.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      .+||++||||||+|+++|..+++      .|.+|+|||+.. .||..
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar------~G~kV~vIEk~~-~GG~c   41 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAE------LGARAAVVESHK-LGGTC   41 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH------TTCCEEEEESSC-TTHHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHH------CCCEEEEEeccC-CCCcc
Confidence            36999999999999999999999      899999999864 44433

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.5e-09  Score=65.63  Aligned_cols=94  Identities=20%  Similarity=0.223  Sum_probs=64.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||++|+-+|..|++...  ..|.+|+++|+.+.+...                                    
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~--~~g~~Vt~i~~~~~~l~~------------------------------------   79 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKAR--ALGTEVIQLFPEKGNMGK------------------------------------   79 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHH--HHTCEEEEECSSSSTTTT------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHH--hcCCEEEEecccccCCcc------------------------------------
Confidence            469999999999999999975321  147899999987643200                                    


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEEE-----EEeCCEEEec
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVKG-----IATGDVGIAK  177 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~~-----v~~~~~vi~a  177 (182)
                                              .++ ..+...+.+.+++.|+++++++.|++++.++++..+.     .+..|.||.|
T Consensus        80 ------------------------~~~-~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A  134 (137)
T d1m6ia2          80 ------------------------ILP-EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAA  134 (137)
T ss_dssp             ------------------------TSC-HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEEC
T ss_pred             ------------------------cCC-HHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEe
Confidence                                    000 1456677788888999999999999998744322221     2344777766


Q ss_pred             CC
Q psy2240         178 DG  179 (182)
Q Consensus       178 dG  179 (182)
                      -|
T Consensus       135 ~G  136 (137)
T d1m6ia2         135 VG  136 (137)
T ss_dssp             CC
T ss_pred             ec
Confidence            65

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.03  E-value=8.4e-11  Score=78.90  Aligned_cols=46  Identities=26%  Similarity=0.367  Sum_probs=36.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhh-cCCCceEEEEecCCCCCCccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEK-DGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~-~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ++|+|||+||+||++|+.|++...+ ...+++|+|+||.+.+||...
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~   49 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   49 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee
Confidence            5899999999999999999992100 012268999999999998664

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.02  E-value=6.4e-10  Score=74.50  Aligned_cols=52  Identities=25%  Similarity=0.473  Sum_probs=38.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIAL   78 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~   78 (182)
                      ++|+||||||+|+++|+.+++..   .++.+|+++|+. ..||....-++++++.+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~---~~~~~V~liEk~-~~GG~cln~GciPsK~l   53 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSH---PETTQVTVIDCD-GIGGAAVLDDCVPSKTF   53 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHC---TTTEEEEEEESS-CTTHHHHHTSHHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcC---CCCCEEEEEecC-CCCceeecccccccEEE
Confidence            57999999999999999988731   135789999986 46665545555544443

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.01  E-value=2e-10  Score=74.74  Aligned_cols=40  Identities=30%  Similarity=0.503  Sum_probs=35.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCCCCcc
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEVGGHI   67 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~~g~~   67 (182)
                      ...|+|||||++||++|+.|++      .|+ +|+|+||.+..++..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~------~G~~~V~v~E~~~~~gg~~   44 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLAR------LGYSDITIFEKQEYVGGLS   44 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHH------TTCCCEEEEESSSSCSTHH
T ss_pred             CCEEEEECChHHHHHHHHHHHH------CCCCeEEEEEecCcccchh
Confidence            3579999999999999999999      898 599999999887744

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.00  E-value=2.4e-10  Score=77.88  Aligned_cols=49  Identities=22%  Similarity=0.352  Sum_probs=41.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVID   74 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~   74 (182)
                      .++||++|||||++|+.+|+.+++      .|.+|+++|+.+..||....-++.+
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~------~G~kv~vve~~~~lGG~c~n~GcvP   88 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRA------MGGRQLIVDRWPFLGGSCPHNACVP   88 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHH------TTCCEEEEESSSSSSCHHHHHSHHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCccccccccccccc
Confidence            457999999999999999999999      8999999999998887654444443

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.95  E-value=3.4e-10  Score=75.62  Aligned_cols=42  Identities=29%  Similarity=0.367  Sum_probs=35.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccc
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHIL   68 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~   68 (182)
                      ..|+||||||+|+++|..|.+.    +.|.+|+|||+.+.++|...
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~----~~~~~V~v~e~~~~~gG~~~   43 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKH----HSRAHVDIYEKQLVPFGLVR   43 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----CSSCEEEEECSSSSSCTHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCCCCCCceeh
Confidence            3699999999999999999872    24789999999999987543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=1.5e-08  Score=60.68  Aligned_cols=71  Identities=15%  Similarity=0.237  Sum_probs=56.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||+.|+-+|..|++      .|.+|+|+++++....                                     
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~------lG~~Vtii~~~~~l~~-------------------------------------   57 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAG------IGLDVTVMVRSILLRG-------------------------------------   57 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH------TTCCEEEEESSSSSTT-------------------------------------
T ss_pred             CeEEEECCCccHHHHHHHHhh------cCCeEEEEEechhhcc-------------------------------------
Confidence            379999999999999999999      8999999997532110                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCC
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGD  162 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~  162 (182)
                               +                + .++.+.+.+.+++.|++|+.++.|++++..++
T Consensus        58 ---------~----------------D-~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~   91 (122)
T d1h6va2          58 ---------F----------------D-QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEA   91 (122)
T ss_dssp             ---------S----------------C-HHHHHHHHHHHHHTTEEEEESCEEEEEEEEEC
T ss_pred             ---------C----------------C-HHHHHHHHHHHHHCCCEEEECCEEEEEEEecC
Confidence                     0                0 25677888888899999999999999876443

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.92  E-value=3.4e-10  Score=76.08  Aligned_cols=37  Identities=19%  Similarity=0.396  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAEV   63 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~~   63 (182)
                      ++||++|||+||+|+++|+.+++      .|. +|+|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~------~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAAS------LHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH------HHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHH------cCCCEEEEEEEeccC
Confidence            57999999999999999999999      565 69999988753

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.88  E-value=2.8e-08  Score=59.13  Aligned_cols=79  Identities=23%  Similarity=0.204  Sum_probs=59.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCccccccccChhHHhhhhhhHHhcCCCCCccchhhhHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHILSGAVIDPIALNELLPDWKDLGAPLNTPVHEDKFA  102 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (182)
                      ..++|||||+.|+-+|..|+.+.   ..+.+|+++|+.+..-.                                     
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~---~~~~~Vtli~~~~~iL~-------------------------------------   60 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYK---PKDGQVTLCYRGEMILR-------------------------------------   60 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHC---CTTCEEEEEESSSSSST-------------------------------------
T ss_pred             CeEEEECCcHHHHHHHHHhhhcc---cCCcEEEEEeccchhhc-------------------------------------
Confidence            47999999999999998877631   13568999998754310                                     


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHcCcEEecCCccceeEEcCCCcEE
Q psy2240         103 YLTKSKRIGIPILPGMPMNNHGNYVVRLGHVVKWLGEQAEAMGVEIYPGIPASEVLYHGDGSVK  166 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~  166 (182)
                                 .             ++ ..+.+.+.+.+++.|+++++++++++++.+.++...
T Consensus        61 -----------~-------------~d-~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~   99 (117)
T d1aoga2          61 -----------G-------------FD-HTLREELTKQLTANGIQILTKENPAKVELNADGSKS   99 (117)
T ss_dssp             -----------T-------------SC-HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEE
T ss_pred             -----------c-------------cc-hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEE
Confidence                       0             00 146677788888899999999999999876666543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.85  E-value=1.2e-09  Score=77.86  Aligned_cols=35  Identities=31%  Similarity=0.508  Sum_probs=32.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..+|+||||+|++|+.+|+.|++      +|++|+|||++.
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLae------aG~~VlvLEaG~   40 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQ------AGIPTQIVEMGR   40 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH------TTCCEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCC
Confidence            46899999999999999999999      899999999973

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.82  E-value=2.7e-09  Score=71.29  Aligned_cols=35  Identities=23%  Similarity=0.456  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      +.||++||||||+|+++|..+++      .|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~------~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAAT------LYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHH------TSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHH------cCCCEEEEEEeec
Confidence            56999999999999999999999      665 688999864

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.81  E-value=1.9e-09  Score=76.69  Aligned_cols=33  Identities=21%  Similarity=0.423  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .||||||+|++|+.+|+.|++      +|++|+|||+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLae------aG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGE------AGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH------TTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHH------CcCeEEEEecCC
Confidence            599999999999999999999      899999999974

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.77  E-value=2.8e-09  Score=76.61  Aligned_cols=36  Identities=33%  Similarity=0.582  Sum_probs=32.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~   62 (182)
                      ++||+||||||.+|+.+|..|++      .+ .+|+|||+++.
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae------~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTE------NPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT------STTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHH------CCCCeEEEEcCCCC
Confidence            47999999999999999999998      66 79999999963

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.75  E-value=2.1e-09  Score=76.25  Aligned_cols=38  Identities=39%  Similarity=0.591  Sum_probs=33.3

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          18 RFEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        18 ~~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +++.+||+||||+|.+|+.+|..|++      . .+|+|||+++.
T Consensus        22 ~~~~~YD~IIVGsG~aG~vlA~rLae------~-~kVLvLEaG~~   59 (351)
T d1ju2a1          22 ELEGSYDYVIVGGGTSGCPLAATLSE------K-YKVLVLERGSL   59 (351)
T ss_dssp             CSEEEEEEEEECCSTTHHHHHHHHTT------T-SCEEEECSSBC
T ss_pred             cccCCccEEEECccHHHHHHHHHhcC------C-CCEEEEecCCC
Confidence            34567999999999999999999997      5 89999999964

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=9e-10  Score=72.77  Aligned_cols=39  Identities=26%  Similarity=0.453  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ..++++|||||++|+.+|..|.+.    +...+|++|++.+..
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~----~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRAR----DPGARVLIVSEDPEL   41 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHH----STTCEEEEEESSSSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhc----CCCCcEEEEeCCCCC
Confidence            457899999999999999999872    244689999987643

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.62  E-value=1.1e-07  Score=61.67  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .|+|||||.+|+.+|..|.+.    +++.+|+++||.+..
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~----~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNL----HPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHH----CTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhc----CCCCeEEEEeCCCcc
Confidence            499999999999999999884    256799999987654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.27  E-value=5.5e-07  Score=57.15  Aligned_cols=36  Identities=36%  Similarity=0.588  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .|+|||||++|+.+|..|.+.    ++..+|+|||+.+..
T Consensus         4 rivIvGgG~~G~e~A~~l~~~----~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLA----DPSIEVTLIEPNTDY   39 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH----CTTSEEEEECSCSCE
T ss_pred             cEEEECccHHHHHHHHHHHHc----CCCCcEEEEECCCcc
Confidence            699999999999999999883    234699999998743

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.16  E-value=8.8e-07  Score=56.44  Aligned_cols=35  Identities=29%  Similarity=0.351  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      -+|+|||||++|+.+|..|++      .|.+|++++..+..
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~------~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRA------SGWEGNIRLVGDAT   38 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCCSEEEEECSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHH------cCCceEEEEecCcc
Confidence            479999999999999999999      78888888877654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.10  E-value=1.6e-06  Score=54.33  Aligned_cols=33  Identities=39%  Similarity=0.641  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .|+|||||++|+.+|..|++       +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-------~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-------TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-------TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc-------CCCEEEEeccccc
Confidence            59999999999999999965       6799999987654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.00  E-value=1.6e-06  Score=55.24  Aligned_cols=35  Identities=26%  Similarity=0.324  Sum_probs=28.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +.+|+|||||++|+.+|..|.+      .|.++.+++..+.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~------~g~~v~i~~~~~~   37 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQ------AGYQGLITVVGDE   37 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHH------HTCCSCEEEEESS
T ss_pred             CCCEEEECccHHHHHHHHHHHh------cCCceEEEEEecc
Confidence            3469999999999999999998      6777666665543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.96  E-value=4.4e-06  Score=53.15  Aligned_cols=32  Identities=28%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|||+|..|+.+|..|++      +|++|.+++|++
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~------~G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLAL------KGQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            58999999999999999999      899999999975

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=7.1e-06  Score=46.24  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .|+|+|.|.+|+++|..|.+      .|.+|++.|.....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~------~g~~v~~~D~~~~~   40 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLA------RGVTPRVMDTRMTP   40 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHH------TTCCCEEEESSSSC
T ss_pred             EEEEEeECHHHHHHHHHHHH------CCCEEEEeeCCcCc
Confidence            69999999999999999999      89999999987653

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.90  E-value=5.7e-06  Score=52.32  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|||+|..|..+|..|++      +|++|+|+||...
T Consensus         4 ~IliiGaG~~G~~~a~~L~~------~g~~V~v~dr~~~   36 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTD------SGIKVTVACRTLE   36 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHT------TTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHh------CCCEEEEEECChH
Confidence            59999999999999999999      8999999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.1e-05  Score=51.83  Aligned_cols=33  Identities=27%  Similarity=0.455  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||+|..|...|..+++      +|++|+++|+++.
T Consensus         6 kvaViGaG~mG~~iA~~~a~------~G~~V~l~D~~~~   38 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAA------TGHTVVLVDQTED   38 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCEEEEECSCHH
T ss_pred             EEEEECcCHHHHHHHHHHHh------CCCcEEEEECChH
Confidence            69999999999999999999      8999999998864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=1.6e-05  Score=49.55  Aligned_cols=34  Identities=15%  Similarity=0.140  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .|+|||+|..|...|..|++      .|++|++++|.+..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~------~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCK------QGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCEEEEECSSCCS
T ss_pred             EEEEECcCHHHHHHHHHHHH------CCCceEEEEcCHHH
Confidence            49999999999999999999      89999999998753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.73  E-value=2.1e-05  Score=47.23  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|+|+|..|..+|..|.+      .|.+|+++|+++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~------~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSE------KGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHH------CCCCcceecCChh
Confidence            48999999999999999999      8999999999864

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.70  E-value=1.5e-05  Score=50.90  Aligned_cols=33  Identities=15%  Similarity=0.244  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||+|..|...|..+++      +|++|+++|+++.
T Consensus         6 ~vaViGaG~mG~~iA~~~a~------~G~~V~l~D~~~~   38 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSAS------KGTPILMKDINEH   38 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHH------TTCCEEEECSSHH
T ss_pred             EEEEECcCHHHHHHHHHHHh------CCCeEEEEECCHH
Confidence            59999999999999999999      8999999998753

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.69  E-value=2.1e-05  Score=50.27  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=31.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...+|+|||+|..|.++|..|++      .|.+|+++.|++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~------~g~~V~l~~r~~   40 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSK------KCREVCVWHMNE   40 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT------TEEEEEEECSCH
T ss_pred             eeceEEEECCCHHHHHHHHHHHH------cCCeEEEEEecH
Confidence            33479999999999999999999      889999998864

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=0.00069  Score=40.02  Aligned_cols=35  Identities=23%  Similarity=0.432  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..+|+|||||-+.+-.|+.|++      ...+|+++-|++.
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~------~a~~V~li~r~~~   61 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSN------IASEVHLIHRRDG   61 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTT------TSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHhh------cCCcEEEEeeccc
Confidence            4589999999999999999999      6789999977654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.61  E-value=5.6e-05  Score=47.54  Aligned_cols=36  Identities=28%  Similarity=0.280  Sum_probs=32.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +...|+|||+|.+|+.++..+.+      .|..|+++|.+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~------lGA~V~v~D~~~~   63 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKR------LGAVVMATDVRAA   63 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCST
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHH------cCCEEEEEeccHH
Confidence            35689999999999999999988      7999999998864

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.61  E-value=5.4e-05  Score=46.93  Aligned_cols=35  Identities=29%  Similarity=0.337  Sum_probs=31.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ....|+|||+|.+|+.++..+.+      .|..|.++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~------lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVG------LGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhh------CCCEEEEEeCcH
Confidence            35689999999999999999998      799999999864

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.54  E-value=8.3e-05  Score=54.01  Aligned_cols=43  Identities=21%  Similarity=0.292  Sum_probs=38.9

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCCcc
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGGHI   67 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g~~   67 (182)
                      .+.++||||+|-|..=+.+|.+|++      .|.+|+-|||+..-||.+
T Consensus         3 lP~e~DVII~GTGL~ESILAaAlSr------~GkkVLHiD~N~yYGg~~   45 (491)
T d1vg0a1           3 LPSDFDVIVIGTGLPESIIAAACSR------SGQRVLHVDSRSYYGGNW   45 (491)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSSSSCGGG
T ss_pred             CCCccCEEEECCChHHHHHHHHHHh------cCCEEEEecCCCcCCCcc
Confidence            3568999999999999999999999      899999999999877754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.51  E-value=8.5e-05  Score=45.77  Aligned_cols=34  Identities=21%  Similarity=0.097  Sum_probs=29.6

Q ss_pred             cEEEE--CCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          24 DVVIV--GGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        24 dv~II--GgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      .++|+  |||..|+.+|-.|++      .|.+|+++|+.+.+
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~------~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLAT------AGHEVTIVSGVHLA   76 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHH------TTCEEEEEESSCTT
T ss_pred             ceEEEecCCChHHHHHHHHHHH------cCCeEEEEecCCcc
Confidence            45555  999999999999999      89999999987654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.47  E-value=5.5e-05  Score=45.40  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .++|||.|-.|..+|..|.+      .|.+|+++|+++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~------~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHR------MGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHH------TTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHH------CCCeEEEecCcHH
Confidence            48999999999999999999      8999999999863

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.36  E-value=0.00011  Score=47.40  Aligned_cols=32  Identities=25%  Similarity=0.247  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||.|-.|+.+|..|++      .|.+|+.+|.++
T Consensus         2 kI~ViGlG~vGl~~a~~la~------~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSA------RGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHh------CCCcEEEEeCCH
Confidence            38999999999999999999      899999999875

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.32  E-value=0.00018  Score=44.17  Aligned_cols=37  Identities=22%  Similarity=0.308  Sum_probs=30.8

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          19 FEDVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        19 ~~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      +.+...|.|||+|-.|.++|+.|+.      .++ +++++|..+
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~------~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCAL------RELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHH------HTCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHh------CCCceEEEEEecc
Confidence            3456789999999999999999888      454 899999765

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.28  E-value=0.00014  Score=46.03  Aligned_cols=31  Identities=26%  Similarity=0.319  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      .|.|||+|..|.++|..|++      .|.+|.++.|.
T Consensus         2 kI~ViGaG~~GtalA~~la~------~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVD------NGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHH------HCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHH------CCCEEEEEEec
Confidence            58999999999999999999      78999999764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.25  E-value=0.00023  Score=43.34  Aligned_cols=36  Identities=25%  Similarity=0.416  Sum_probs=30.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHhhhhcCCC--ceEEEEecCC
Q psy2240          20 EDVADVVIVGGGPAGMAAAIRLKQLAEKDGKE--LKVCLVEKAA   61 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g--~~v~vlE~~~   61 (182)
                      .....|.|||+|-.|.++|+.|++      .|  -+++++|+..
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~------~~~~~elvL~D~~~   40 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQ------QGIAEEFVIVDVVK   40 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHH------HTCCSEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh------cCCCcEEEEeeccc
Confidence            344579999999999999999999      55  4899999765

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.22  E-value=0.00025  Score=44.02  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|.|||.|..|.+.|..|.+      .|++|+++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~------~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRR------RGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHH------CCCEEEEEECCc
Confidence            38999999999999999999      899999999875

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.19  E-value=0.00028  Score=43.28  Aligned_cols=34  Identities=21%  Similarity=0.298  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      -+|+|||||-+|+=+|..|.+      .|. +|+++.|.+.
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r------~GA~~V~vi~rr~~   80 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALR------CGARRVFLVFRKGF   80 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHH------TTCSEEEEECSSCG
T ss_pred             CEEEEECCChhHHHHHHHHHH------cCCcceeEEEeCCh
Confidence            369999999999999999998      665 5889987653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.09  E-value=0.00056  Score=39.57  Aligned_cols=34  Identities=24%  Similarity=0.256  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...|+|||+|..|..-|..|.+      .|.+|+++....
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~------~ga~v~v~~~~~   45 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLE------AGARLTVNALTF   45 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------TTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------CCCeEEEEeccC
Confidence            3479999999999999999999      899999997543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.00  E-value=0.00096  Score=41.07  Aligned_cols=34  Identities=35%  Similarity=0.542  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ...|.|||+|-.|.++|+.|..      .|+  +++++|...
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~------~~l~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILG------KSLADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHH------TTCCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHh------cCCCcEEEEEEecc
Confidence            4589999999999999999999      676  899999864

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.95  E-value=0.00057  Score=41.71  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=30.5

Q ss_pred             cEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.||| .|..|.+.|..|.+      +|++|.++|+...
T Consensus        11 kI~iIGg~G~mG~~la~~L~~------~G~~V~~~d~~~~   44 (152)
T d2pv7a2          11 KIVIVGGYGKLGGLFARYLRA------SGYPISILDREDW   44 (152)
T ss_dssp             CEEEETTTSHHHHHHHHHHHT------TTCCEEEECTTCG
T ss_pred             eEEEEcCCCHHHHHHHHHHHH------cCCCcEecccccc
Confidence            699999 69999999999999      8999999999764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00029  Score=43.01  Aligned_cols=33  Identities=24%  Similarity=0.488  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ...++|||||..|+.-|..|.+      .|.+|+|+...
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~------~GA~VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMP------TGCKLTLVSPD   45 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGG------GTCEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCC
Confidence            3479999999999999999999      89999999543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.91  E-value=0.00062  Score=42.32  Aligned_cols=33  Identities=21%  Similarity=0.464  Sum_probs=27.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|+|+|+.|+.++..+..      .|.+|+++|+.+
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~------~Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKA------YGAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhh------hcccccccchHH
Confidence            469999999999998766655      789999999875

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.87  E-value=0.0009  Score=41.90  Aligned_cols=34  Identities=18%  Similarity=0.449  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+|-|||-|..|...|..|.+      +|++|.+++|.+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~------~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMND------HGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH------TTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHH------CCCeEEEEcCCHH
Confidence            479999999999999999999      8999999999863

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00078  Score=41.93  Aligned_cols=33  Identities=27%  Similarity=0.495  Sum_probs=28.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..|+|+|+|+.|+.++..+..      .|. +|+++|+++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~------~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKA------MGAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHH------cCCceEEeccCCH
Confidence            469999999999988877766      787 799999875

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.0012  Score=38.92  Aligned_cols=36  Identities=39%  Similarity=0.517  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ..+|+|||||-+.+-.|+.|++      ...+|+++-|.+..
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~------~a~~V~li~r~~~~   65 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAG------IVEHVTLLEFAPEM   65 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHT------TBSEEEEECSSSSC
T ss_pred             CceEEEEeCCHHHHHHHHhhhc------cCCceEEEeccccc
Confidence            4589999999999999999999      56799999887654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.80  E-value=0.00068  Score=42.87  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=29.3

Q ss_pred             cEEEE-CCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIV-GGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~II-GgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|| |+|-.|.++|..|++      .|.+|++..|++.
T Consensus         2 ki~vigGaG~iG~alA~~la~------~G~~V~l~~R~~e   35 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLAT------LGHEIVVGSRREE   35 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT------TTCEEEEEESSHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHH------CCCEEEEEECCHH
Confidence            38899 669999999999999      8999999998853

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00091  Score=41.51  Aligned_cols=35  Identities=20%  Similarity=0.243  Sum_probs=28.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...|+|+|+|+.|+.++..+..      .|.+|+++++++.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~------~G~~vi~~~~~~~   62 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKA------MGAETYVISRSSR   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------HTCEEEEEESSST
T ss_pred             CCEEEEECCCCcchhHHHHhhh------ccccccccccchh
Confidence            3469999999999987655544      6899999998764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.002  Score=37.02  Aligned_cols=35  Identities=26%  Similarity=0.462  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      +.|.|+|||--|-+.|....+      .|+++.++|.++..
T Consensus        12 ~kigIlGgGQL~rMla~aA~~------lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQR------LGVEVIAVDRYADA   46 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHT------TTCEEEEEESSTTC
T ss_pred             CEEEEEeCCHHHHHHHHHHHH------CCCEEEEEcCCCCC
Confidence            469999999999999999998      79999999988653

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.0014  Score=40.24  Aligned_cols=34  Identities=35%  Similarity=0.559  Sum_probs=29.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ...|.|||+|-.|.++|+.|..      .++  +++|+|...
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~------~~l~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILL------KGLADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT------TTSCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHh------cCCCCEEEEEeCCc
Confidence            3579999999999999999998      565  799999764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.75  E-value=0.001  Score=40.09  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      .|.|||+|-.|.++|+.|+.      .++ +++++|..+.
T Consensus         3 KI~IIGaG~VG~~~A~~l~~------~~l~dl~l~D~~~~   36 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAA------KELGDIVLLDIVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------HTCSEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHh------CCcceEEEEeeccc
Confidence            68999999999999999988      444 8999997653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.74  E-value=0.001  Score=41.16  Aligned_cols=34  Identities=24%  Similarity=0.173  Sum_probs=27.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...|+|+|+|+.|+.++..+..      .|.+|+++++.+
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~------~G~~Vi~~~~~~   61 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARA------MGLHVAAIDIDD   61 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             CCEEEEeeccccHHHHHHHHHH------cCCccceecchh
Confidence            3469999999999987665555      789999999875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0012  Score=41.01  Aligned_cols=33  Identities=15%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .+|+|+|+|-++-++++.|.+      .|.+|.|+.|..
T Consensus        19 k~vlIlGaGGaarai~~al~~------~g~~i~I~nRt~   51 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLS------LDCAVTITNRTV   51 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHhcc------cceEEEeccchH
Confidence            479999999999999999999      788999998875

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.73  E-value=0.0014  Score=39.49  Aligned_cols=33  Identities=21%  Similarity=0.461  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ..|.|||+|-.|.++|+.|..      .++  +++++|..+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~------~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQ------RGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHh------cCCCcEEEEEEecc
Confidence            369999999999999999998      665  799999764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.73  E-value=0.00064  Score=38.91  Aligned_cols=34  Identities=15%  Similarity=0.129  Sum_probs=27.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..+|+|||+|.+|.=+|..|++      ...+++++-+.+
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~------~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTP------VAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTT------TSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHH------hcCEEEEEEecC
Confidence            3589999999999999999998      556666666554

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.73  E-value=0.0012  Score=40.07  Aligned_cols=34  Identities=24%  Similarity=0.465  Sum_probs=29.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      ...|.|||+|-.|.++|+.|+.      .++  +++++|..+
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~------~~l~~el~L~Di~~   41 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMN------QGIADEIVLIDANE   41 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHH------HTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHh------cCCCceEEEEeecc
Confidence            4579999999999999999998      454  799999764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.68  E-value=0.0014  Score=38.90  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=32.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      ...+|+|||||-+.+-.|+.|++      .-.+|+++-|.+...
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~------~a~~V~li~r~~~~r   70 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTK------YGSKVYIIHRRDAFR   70 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTT------TSSEEEEECSSSSCC
T ss_pred             CCCEEEEEcCchHHHHHHHHHhC------CCCcEEEEEeccccc
Confidence            34689999999999999999999      557999998887653

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.67  E-value=0.0017  Score=39.10  Aligned_cols=33  Identities=27%  Similarity=0.502  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~~   62 (182)
                      .|.|||+|-.|.++|+.|..      .++  ++.++|....
T Consensus         3 KI~IIGaG~VG~~~a~~l~~------~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMAL------RQTANELVLIDVFKE   37 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHH------TTCSSEEEEECCC--
T ss_pred             eEEEECCCHHHHHHHHHHHh------cCCCCEEEEEeccCC
Confidence            69999999999999999998      555  7999997764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.65  E-value=0.0021  Score=39.06  Aligned_cols=33  Identities=36%  Similarity=0.489  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ..|.|||+|-.|.++|+.|.+      .++ +++|+|..+
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~------~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQ------KNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh------CCCCeEEEEeccC
Confidence            479999999999999998887      444 799999765

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.64  E-value=0.002  Score=38.80  Aligned_cols=33  Identities=27%  Similarity=0.619  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~~   62 (182)
                      +|.|||+|-.|.++|+.|+.      .++  +++++|..+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~------~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAE------KQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHh------CCCCceEEEeccccc
Confidence            48999999999999999998      553  8999997764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.52  E-value=0.0013  Score=40.45  Aligned_cols=33  Identities=18%  Similarity=0.286  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|-|||-|..|...|..|.+      +|++|.++++.+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~------~G~~V~~~d~~~~   34 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLK------AGYSLVVSDRNPE   34 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHH------TTCEEEEECSCHH
T ss_pred             EEEEEehhHHHHHHHHHHHH------CCCeEEEEeCCcc
Confidence            38999999999999999999      8999999998864

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.52  E-value=0.0018  Score=40.68  Aligned_cols=34  Identities=24%  Similarity=0.434  Sum_probs=27.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ..|+|+|+|+.|+.+...+..      .|. +|+++|+++.
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~------~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARS------LGAENVIVIAGSPN   64 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTBSEEEEEESCHH
T ss_pred             CEEEEECCCccchhheecccc------cccccccccccccc
Confidence            469999999999887666655      787 7999998753

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.51  E-value=0.0017  Score=39.36  Aligned_cols=32  Identities=22%  Similarity=0.352  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      .|.|||+|-.|.++|+.|..      .|+  +++++|...
T Consensus         3 KI~IIGaG~VG~~~a~~l~~------~~~~~elvL~Di~~   36 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIA------QGVADDYVFIDANE   36 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------HTCCSEEEEECSSH
T ss_pred             eEEEECcCHHHHHHHHHHHh------cCCCceEEEEeccc
Confidence            58999999999999999988      454  799999764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0022  Score=38.97  Aligned_cols=32  Identities=13%  Similarity=0.333  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .++|+|.|..|..++..|.+      .|.+|+++|..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~------~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQ------RGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHH------TTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHH------cCCCEEEEeccc
Confidence            49999999999999999998      899999999876

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.46  E-value=0.0022  Score=38.77  Aligned_cols=32  Identities=28%  Similarity=0.557  Sum_probs=27.8

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      +|.|||+ |-.|.++|+.|+.      .++  ++.++|..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~------~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAK------EPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT------CTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHh------CCcccccccccchh
Confidence            4899996 9999999999998      664  899999764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.40  E-value=0.0015  Score=41.51  Aligned_cols=32  Identities=19%  Similarity=0.408  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||.|-.|+.+|..++       .|.+|+.+|-++.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-------~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-------LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-------TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-------CCCcEEEEECCHH
Confidence            3899999999999998776       4899999997753

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.38  E-value=0.0024  Score=39.33  Aligned_cols=33  Identities=15%  Similarity=0.259  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||-|..|...|..|.+      +|++|.++||.+.
T Consensus         3 kIg~IGlG~MG~~iA~~L~~------~g~~v~~~d~~~~   35 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLK------AGYLLNVFDLVQS   35 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHH------TTCEEEEECSSHH
T ss_pred             EEEEEEEHHHHHHHHHHHHH------CCCeEEEEECchh
Confidence            49999999999999999999      8999999998754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.38  E-value=0.0024  Score=38.48  Aligned_cols=32  Identities=28%  Similarity=0.493  Sum_probs=27.2

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      .|.|||+ |-.|.++|+.|+.      .++  +++++|..+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~------~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKN------SPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHT------CTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHh------CCccceEEEEeccc
Confidence            5899996 9999999999998      665  699998653

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.35  E-value=0.0023  Score=39.99  Aligned_cols=32  Identities=31%  Similarity=0.490  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|-|||-|..|...|.+|.+      .|++|.+++|.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~------~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAE------KGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHH------TTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHH------CCCeEEEEECCH
Confidence            48999999999999999999      899999999875

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.34  E-value=0.0024  Score=38.46  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      +|.|||+|-.|.++|+.|+.      .++  +++++|..+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~------~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLL------NLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------HSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHh------cCcCceEEEEeccc
Confidence            58999999999999999987      454  699999764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.32  E-value=0.0032  Score=38.91  Aligned_cols=32  Identities=28%  Similarity=0.341  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      .|.|||.|..|.+.|..|.+      .|.  +|..+|+++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~------~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRR------SGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHH------TTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHh------cCCCeEEEEEECCh
Confidence            49999999999999999998      664  788899875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0037  Score=38.61  Aligned_cols=35  Identities=17%  Similarity=0.089  Sum_probs=27.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      -..|+|+|+|+.|+.++..+..      .|.+++++++.+.
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~------~Ga~~i~~~~~~~   65 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHA------MGAHVVAFTTSEA   65 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------TTCEEEEEESSGG
T ss_pred             CCEEEEeccchHHHHHHHHhhc------ccccchhhccchh
Confidence            3469999999999877544444      7999999987654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.25  E-value=0.0032  Score=38.95  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ..+|+|+|+|-++-++++.|.+      .|. ++.|+.|...
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~------~g~~~I~I~nR~~~   52 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKN------SGFEKLKIYARNVK   52 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHH------TTCCCEEEECSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHH------CCCCEEEEecccHH
Confidence            4579999999999999999999      786 7999988753

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0034  Score=33.44  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|+|||=-|-+.+.+..+      .|+++.+++..+.
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~------LG~~v~vldp~~~   35 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEP------LGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGG------GTEEEEEECTTSC
T ss_pred             EEEEEcCCHHHHHHHHHHHH------cCCEEEEEcCCCC
Confidence            48999999999999999998      7999999997654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.21  E-value=0.0031  Score=37.81  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|.|||+|-.|.++|+.|+..    +..-++.++|...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~----~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMK----GFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH----TCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhC----CCCCEEEEEeccc
Confidence            589999999999999999881    1224899999764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.17  E-value=0.0042  Score=38.76  Aligned_cols=34  Identities=15%  Similarity=0.304  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~   62 (182)
                      .-|+|+|+|+.|+.+...+..      .| .+|+++|..+.
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~------~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKS------AGASRIIGIDLNKD   65 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCSEEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHH------cCCceEEEecCcHH
Confidence            349999999999998888877      77 58999998764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.15  E-value=0.0039  Score=37.82  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +|.|||.|..|...|..|.+      .|++|++.++.+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~------~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRS------RGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHH------TTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHH------CCCeEEEEcCchh
Confidence            48999999999999999999      8999999987654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.12  E-value=0.003  Score=39.33  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=27.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      +...|+|+|+|+.|++++..+..      .|. +|+++|+++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~------~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKL------RGAGRIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHT------TTCSCEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhc------ccccccccccchh
Confidence            34579999999999887666655      686 799999765

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0031  Score=41.61  Aligned_cols=35  Identities=29%  Similarity=0.330  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ...|+|||+|-.|+.+|..|++      .|. +++++|.+..
T Consensus        30 ~~~VliiG~GglGs~va~~La~------~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLAS------AGVGNLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHH------HTCSEEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH------cCCCeEEEECCccc
Confidence            4689999999999999999999      687 8999997753

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.09  E-value=0.004  Score=39.52  Aligned_cols=35  Identities=26%  Similarity=0.336  Sum_probs=27.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      .-..|+|+|+|+.|+.++..+..      .|. +|+++|..+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~------~ga~~Vi~~d~~~   60 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARL------LGAAVVIVGDLNP   60 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH------TTCSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh------hcccceeeecccc
Confidence            34579999999999888777765      455 788888765

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.013  Score=37.90  Aligned_cols=39  Identities=26%  Similarity=0.419  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHcCcEEecCCccceeEEcCC-CcEEEEEe
Q psy2240         132 HVVKWLGEQAEAMGVEIYPGIPASEVLYHGD-GSVKGIAT  170 (182)
Q Consensus       132 ~l~~~l~~~~~~~gv~i~~~~~v~~i~~~~~-g~~~~v~~  170 (182)
                      .+.+.|.+.+++.|++|+++++|++|..+++ +.+.+|.+
T Consensus       237 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~  276 (297)
T d2bcgg1         237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT  276 (297)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEc
Confidence            5788899999999999999999999987554 44555544

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.99  E-value=0.0038  Score=38.40  Aligned_cols=34  Identities=29%  Similarity=0.186  Sum_probs=27.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...|+|+|+|+.|+.++..+..      .|.+|+++++++
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~------~g~~v~~~~~~~   61 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKA------MGLNVVAVDIGD   61 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             CCEEEEeecccchhhhhHHHhc------CCCeEeccCCCH
Confidence            3469999999999987666665      789999998764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.99  E-value=0.0077  Score=37.41  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=28.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      +-..|+|+|+|+.|+.++..+..      .|. +|++.|.++.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~------~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKI------AGASRIIAIDINGE   64 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH------TTCSEEEEECSCGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHH------hCCceeeeeccchH
Confidence            33469999999999998877776      787 5777887653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.79  E-value=0.0085  Score=35.91  Aligned_cols=31  Identities=29%  Similarity=0.581  Sum_probs=26.4

Q ss_pred             cEEEEC-CChHHHHHHHHHHHhhhhcCCCc--eEEEEecC
Q psy2240          24 DVVIVG-GGPAGMAAAIRLKQLAEKDGKEL--KVCLVEKA   60 (182)
Q Consensus        24 dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~   60 (182)
                      .|.||| +|-.|.++|+.|..      .++  ++.++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~------~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIAL------RDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHh------CCCCCEEEEEecC
Confidence            689999 69999999999998      555  78999853

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.74  E-value=0.00011  Score=48.45  Aligned_cols=36  Identities=14%  Similarity=0.192  Sum_probs=32.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      ..++|||||..|+-+|..|++      .|.+|+++++.+...
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~------~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEE------ANPQIAIPYKRETIA  216 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTS------SCTTSCCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHh------cCCceEEEEeccccc
Confidence            479999999999999999999      899999999987653

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.011  Score=37.03  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ..|+|+|+|-+|-++++.|.+      .|. +++++.|.+.
T Consensus        19 k~vlIlGaGGaarai~~al~~------~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAI------EGLKEIKLFNRRDE   53 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCSEEEEEECSST
T ss_pred             CEEEEECCcHHHHHHHHHHhh------cCCceEeeeccchH
Confidence            479999999999999999999      665 7889998754

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.01  Score=37.71  Aligned_cols=34  Identities=18%  Similarity=0.390  Sum_probs=29.8

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|+|| |..|..++..|.+      +|.+|+++.|++.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~------~g~~V~~~~R~~~   38 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQ------AGYEVTVLVRDSS   38 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH------TTCEEEEEESCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHH------CcCEEEEEEcChh
Confidence            35999995 9999999999998      8999999988753

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.012  Score=34.31  Aligned_cols=34  Identities=26%  Similarity=0.533  Sum_probs=28.7

Q ss_pred             ccEEEECCCh-----------HHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGP-----------AGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~-----------~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|||+|+           ++..+..+|.+      .|++++++.-+|.
T Consensus         8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke------~g~~~iliN~NP~   52 (127)
T d1a9xa3           8 KSILILGAGPIVIGQACEFDYSGAQACKALRE------EGYRVINVNSNPA   52 (127)
T ss_dssp             CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHH------HTCEEEEECSCTT
T ss_pred             CEEEEECCCcCcccccchhHHHHHHHHHHHHH------cCCeEEEecCchH
Confidence            4699999997           67777888888      7999999987764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.47  E-value=0.0085  Score=36.31  Aligned_cols=32  Identities=22%  Similarity=0.245  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|.|||+|-.|.+.|..|.+      .|.++++.+|.+
T Consensus         2 kIg~IG~G~mG~al~~~l~~------~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQ------TPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTT------SSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHh------CCCeEEEEcChH
Confidence            48999999999999999988      789999999875

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.40  E-value=0.01  Score=39.80  Aligned_cols=35  Identities=20%  Similarity=0.183  Sum_probs=30.6

Q ss_pred             cccEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +..|+|+|| |..|..++.+|.+      .|.+|+++.|.+.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~------~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASIS------LGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH------TTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh------CCCEEEEEECCCc
Confidence            456999997 9999999999999      8999999988653

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.36  E-value=0.0093  Score=36.92  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|+|+|-++-++++.|.+      .+.+|+|+.|..
T Consensus        19 k~vlIlGaGGaarai~~aL~~------~~~~i~I~nR~~   51 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQ------AQQNIVLANRTF   51 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHH------TTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHcc------cCceeeeccchH
Confidence            469999999999999999988      678999999875

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.33  E-value=0.0057  Score=35.90  Aligned_cols=44  Identities=20%  Similarity=0.098  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCCCCCCcccc
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAAEVGGHILS   69 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~~~~g~~~~   69 (182)
                      +++.|+|+|+|-+|.+++.++.+.     .+++ |..+|-++..-|....
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~-----~~~~iv~fiDdd~~k~G~~I~   46 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFG-----ESFELRGFFDVDPEKVGRPVR   46 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCC-----SSEEEEEEEESCTTTTTCEET
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhc-----CCcEEEEEEeCchHhcCCEEC
Confidence            456899999999999887766441     4555 5566877765554443

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.31  E-value=0.0091  Score=36.13  Aligned_cols=33  Identities=27%  Similarity=0.481  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~   62 (182)
                      +|.+||+|-.|.+.|..|.+      .| .+|.+++|++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~------~~~~~i~v~~r~~~   35 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVK------QGGYRIYIANRGAE   35 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------HCSCEEEEECSSHH
T ss_pred             EEEEEcCcHHHHHHHHHHHH------CCCCcEEEEeCChh
Confidence            48999999999999998887      34 89999998753

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.014  Score=35.72  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|||-|..|-.+|..|..      .|.+|++.|.+|.
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg------~G~~V~v~e~dp~   58 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRG------FGARVIITEIDPI   58 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCHH
T ss_pred             CEEEEeccccccHHHHHHHHh------CCCeeEeeecccc
Confidence            369999999999999999988      8999999999863

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.019  Score=33.07  Aligned_cols=34  Identities=24%  Similarity=0.575  Sum_probs=28.7

Q ss_pred             ccEEEECCCh-----------HHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGP-----------AGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~-----------~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|+|||+|+           ++..++.+|.+      .|++++++.-+|.
T Consensus         5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~------~g~~~IliN~NPe   49 (121)
T d1a9xa4           5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALRE------DGYETIMVNCNPE   49 (121)
T ss_dssp             CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHH------TTCEEEEECCCTT
T ss_pred             CEEEEECCCcCcccccchhhHHHHHHHHHHHh------cCCeEEEEecChh
Confidence            3699999996           67778888888      8999999988765

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.28  E-value=0.011  Score=36.69  Aligned_cols=34  Identities=18%  Similarity=0.279  Sum_probs=27.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ..|+|+|+|+.|+++...+..      .|. +|+++|.++.
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~------~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKA------AGASRIIGVGTHKD   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------HTCSEEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHH------cCCceeeccCChHH
Confidence            459999999999998877766      565 7888887653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.18  E-value=0.017  Score=35.66  Aligned_cols=34  Identities=18%  Similarity=0.350  Sum_probs=27.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~   62 (182)
                      ..|+|+|+|+.|++++..++.      .| .+|+.+++.+.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~------~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHS------AGAKRIIAVDLNPD   64 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCSEEEEECSCGG
T ss_pred             CEEEEEecCCccchHHHHHHH------HhhchheeecchHH
Confidence            358999999999999888887      44 47888987763

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.11  E-value=0.011  Score=36.75  Aligned_cols=33  Identities=27%  Similarity=0.515  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+|+|+|+|-++-++++.|.+      .| +|.|+-|...
T Consensus        19 k~vlIlGaGG~arai~~aL~~------~~-~i~I~nR~~~   51 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAK------DN-NIIIANRTVE   51 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTS------SS-EEEEECSSHH
T ss_pred             CEEEEECCcHHHHHHHHHHcc------cc-ceeeehhhhh
Confidence            479999999999999999976      56 9999988743

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.026  Score=33.81  Aligned_cols=35  Identities=29%  Similarity=0.349  Sum_probs=26.3

Q ss_pred             cEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|.||| +|-.|.++|+.|+..   .+..-++.++|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~---~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQ---LPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHH---SCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhC---CCCCcEEEEecccc
Confidence            589999 599999999988641   11245899999653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.04  E-value=0.021  Score=35.82  Aligned_cols=33  Identities=27%  Similarity=0.442  Sum_probs=29.2

Q ss_pred             ccEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..++|.| +|-.|..+|..|++      .|.+|+++.|..
T Consensus        24 K~vlItGasgGIG~~ia~~la~------~G~~V~~~~r~~   57 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAG------EGAEVVLCGRKL   57 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH------TTCEEEEEESSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHh------hccchhhcccch
Confidence            4588888 58899999999999      899999999885

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.92  E-value=0.018  Score=35.60  Aligned_cols=35  Identities=20%  Similarity=0.287  Sum_probs=25.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCce-EEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELK-VCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~-v~vlE~~~   61 (182)
                      +...|+|+|+|+.|++++..+..      .|.+ |++.|.++
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~------~g~~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKV------CGASIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHH------HTCSEEEEEESCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccc------cccceeeeeccHH
Confidence            34579999999999998876655      5665 55666554

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.91  E-value=0.017  Score=38.41  Aligned_cols=35  Identities=14%  Similarity=0.206  Sum_probs=30.9

Q ss_pred             cccEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +..|+|+|| |..|..++..|.+      .|.+|+++.|.+.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~------~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLD------LGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH------TTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH------CCCeEEEEECCCc
Confidence            346999997 9999999999998      8999999998754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.0055  Score=37.43  Aligned_cols=42  Identities=19%  Similarity=0.227  Sum_probs=29.1

Q ss_pred             HHHHHHHHcCcEEecCCccceeEEcCCCcEE------EEEeCCEEEecCC
Q psy2240         136 WLGEQAEAMGVEIYPGIPASEVLYHGDGSVK------GIATGDVGIAKDG  179 (182)
Q Consensus       136 ~l~~~~~~~gv~i~~~~~v~~i~~~~~g~~~------~v~~~~~vi~adG  179 (182)
                      .+...++..|++++.++++..+.  +++..+      ....+|.||-|-|
T Consensus       113 ~~~~~~~~~gv~~~~~~~v~~i~--~~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         113 IHRTTLLSRGVKMIPGVSYQKID--DDGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEEE--TTEEEEEETTEEEEECCSEEEECCC
T ss_pred             HHHHHHhhCCeEEEeeeEEEEEc--CCCCEEecCCeEEEEECCEEEECCC
Confidence            44556777899999999999885  444433      1345677777766

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=94.87  E-value=0.02  Score=34.91  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=29.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ...|+|||+|-+|-.++..|..      +|. ++++.-|..
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~------~g~~~i~v~nRt~   58 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVD------RGVRAVLVANRTY   58 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHH------HCCSEEEEECSSH
T ss_pred             cCeEEEECCCHHHHHHHHHHHh------cCCcEEEEEcCcH
Confidence            4579999999999999999998      677 688888764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.85  E-value=0.024  Score=34.97  Aligned_cols=33  Identities=15%  Similarity=0.277  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~~   62 (182)
                      -|+|+|+|..|++++..++.      .| .+|++++.++.
T Consensus        31 tVlV~GaGG~G~~~~~~~~~------~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKA------AGAARIIGVDINKD   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHH------TTCSEEEEECSCGG
T ss_pred             EEEEECCCCcHHHHHHHHHH------cCCceEEeecCcHH
Confidence            49999999999999888887      56 58999987764

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.67  E-value=0.019  Score=35.05  Aligned_cols=34  Identities=29%  Similarity=0.295  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..++|+|=|..|-.+|..|.-      .|.+|+|.|.+|.
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg------~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKG------LGARVYITEIDPI   57 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------HTCEEEEECSCHH
T ss_pred             CEEEEecccccchhHHHHHHh------CCCEEEEEecCch
Confidence            469999999999999999988      7999999999874

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.018  Score=41.04  Aligned_cols=35  Identities=14%  Similarity=0.337  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~~   62 (182)
                      ...|+|||+|-.|+.+|..|++      .|+ +++|+|-+..
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~------~Gvg~i~lvD~D~V   72 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLAL------SGFRQIHVIDMDTI   72 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHT------TTCCCEEEECCCBC
T ss_pred             cCeEEEECCCHHHHHHHHHHHH------cCCCeEEEEECCCc
Confidence            4689999999999999999999      787 8999998753

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.97  E-value=0.048  Score=33.46  Aligned_cols=34  Identities=32%  Similarity=0.235  Sum_probs=25.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~   61 (182)
                      ...|+|+|+|+.|+.++..+..      .| ..|++.++.+
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~------~g~~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKV------MTPATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------HCCCEEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHh------hcCcccccccchh
Confidence            3469999999999987776655      45 4777788765

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.96  E-value=0.041  Score=36.44  Aligned_cols=33  Identities=12%  Similarity=0.052  Sum_probs=27.3

Q ss_pred             cEEEECC-C--hHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGG-G--PAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGg-G--~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      -++|.|| |  -.|.++|..|++      .|.+|++.++...
T Consensus         7 ~alITGaag~~GIG~AiA~~la~------~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           7 KGLIVGVANNKSIAYGIAQSCFN------QGATLAFTYLNES   42 (274)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHT------TTCEEEEEESSTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH------CCCEEEEEeCCHH
Confidence            4788884 2  359999999999      8999999998753

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.91  E-value=0.034  Score=35.61  Aligned_cols=33  Identities=12%  Similarity=0.425  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .+|+|||+|-+|.=+|..+++      .+.+++++=+.+
T Consensus        33 K~V~VvG~G~Sa~dia~~~~~------~~~~~~~~~~~~   65 (235)
T d1w4xa2          33 QRVGVIGTGSSGIQVSPQIAK------QAAELFVFQRTP   65 (235)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------HBSEEEEEESSC
T ss_pred             CEEEEECCCccHHHHHHHHHh------hhcccccccccc
Confidence            479999999999999999999      677777776654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=93.72  E-value=0.074  Score=32.84  Aligned_cols=23  Identities=13%  Similarity=0.333  Sum_probs=20.2

Q ss_pred             ccccEEEECC-ChHHHHHHHHHHH
Q psy2240          21 DVADVVIVGG-GPAGMAAAIRLKQ   43 (182)
Q Consensus        21 ~~~dv~IIGg-G~~Gl~~A~~l~~   43 (182)
                      ....|+|+|| |..|.++++.|++
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~   46 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLAS   46 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHc
Confidence            3457999996 9999999999987

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.65  E-value=0.047  Score=33.34  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=26.5

Q ss_pred             cccEEEECC-ChHHHHHHHHHHHhhhhcCCC-ceEEEEecCC
Q psy2240          22 VADVVIVGG-GPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~   61 (182)
                      ...|+|+|+ |+.|+.++..+..      .| .+|+++++++
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~------~g~~~V~~~~~~~   63 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKA------VSGATIIGVDVRE   63 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHH------HTCCEEEEEESSH
T ss_pred             CCEEEEEeccccceeeeeecccc------cccccccccccch
Confidence            346999994 9999888776665      45 5899999775

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.49  E-value=0.15  Score=31.57  Aligned_cols=37  Identities=19%  Similarity=0.200  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVG   64 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~   64 (182)
                      ...|.|||.|..|...|..|..      .|.+|..+++.+..+
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~------~g~~v~~~d~~~~~~   78 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAA------LGAQVRGFSRTPKEG   78 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHH------TTCEEEEECSSCCCS
T ss_pred             CceEEEeccccccccceeeeec------ccccccccccccccc
Confidence            3469999999999999988887      799999999886543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.39  E-value=0.041  Score=36.26  Aligned_cols=32  Identities=25%  Similarity=0.405  Sum_probs=29.0

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|.|| |..|..++.+|.+      +|++|+.+++..
T Consensus         3 KIlItGasGfiG~~l~~~L~~------~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKG------KNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTT------SSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHh------CCCEEEEeechh
Confidence            4899998 9999999999988      899999999874

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.36  E-value=0.054  Score=29.88  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             cccccEEEECCChHHHHH-HHHHHHhhhhcCCCceEEEEecCC
Q psy2240          20 EDVADVVIVGGGPAGMAA-AIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        20 ~~~~dv~IIGgG~~Gl~~-A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .....+-+||-|-+|+++ |..|.+      .|++|.--|+..
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~------~G~~VsGSD~~~   42 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLN------EGYQISGSDIAD   42 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHH------HTCEEEEEESCC
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHh------CCCEEEEEeCCC
Confidence            344579999999999887 888888      899999998763

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.31  E-value=0.028  Score=34.02  Aligned_cols=21  Identities=24%  Similarity=0.510  Sum_probs=19.3

Q ss_pred             ccEEEECC-ChHHHHHHHHHHH
Q psy2240          23 ADVVIVGG-GPAGMAAAIRLKQ   43 (182)
Q Consensus        23 ~dv~IIGg-G~~Gl~~A~~l~~   43 (182)
                      ..|.|||| |..|.++|+.|++
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~   26 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAA   26 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCHHHHHHHHHHHh
Confidence            47999996 9999999999987

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.074  Score=32.59  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=24.8

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|+|+ |..|+.+ .++++.     .|.+|+++.+++
T Consensus        30 ~~VlV~Ga~G~vG~~a-iq~a~~-----~G~~vi~~~~~~   63 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAA-CQIARA-----YGLKILGTAGTE   63 (174)
T ss_dssp             CEEEEETCSSHHHHHH-HHHHHH-----TTCEEEEEESSH
T ss_pred             CEEEEEeccccccccc-cccccc-----cCcccccccccc
Confidence            35999996 9999765 455553     799999988654

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=92.96  E-value=0.089  Score=32.32  Aligned_cols=38  Identities=21%  Similarity=0.263  Sum_probs=25.8

Q ss_pred             ccEEEECCChHHHHHHHH--HHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIR--LKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~--l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..|.|||+|-.|.+.++.  |.+  .+...+.+++++|.++.
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~--~~~l~~~eivL~Did~~   42 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCK--TPGLSGSTVTLMDIDEE   42 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHT--CGGGTTCEEEEECSCHH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHh--ccccCCCEEEEEeCCch
Confidence            369999999999776553  333  12223458999998753

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.84  E-value=0.068  Score=32.74  Aligned_cols=33  Identities=18%  Similarity=0.232  Sum_probs=24.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      .-|+|+|+|..|+++...+..      .|. .|++.++++
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~------~G~~~vi~~~~~~   63 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKV------AGASRIIGVDINK   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------HTCSEEEEECSCG
T ss_pred             CEEEEecchhHHHHHHHHHHH------HhcCceEEEcccH
Confidence            358999999999888666655      574 677776654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.82  E-value=0.037  Score=33.42  Aligned_cols=21  Identities=14%  Similarity=0.325  Sum_probs=18.8

Q ss_pred             ccEEEECC-ChHHHHHHHHHHH
Q psy2240          23 ADVVIVGG-GPAGMAAAIRLKQ   43 (182)
Q Consensus        23 ~dv~IIGg-G~~Gl~~A~~l~~   43 (182)
                      .+|.|||| |..|.++|+.|++
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~   25 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGN   25 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHT
T ss_pred             eEEEEECCCCHHHHHHHHHHHH
Confidence            37999995 9999999999986

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.75  E-value=0.045  Score=31.84  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=25.4

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      -++|+|.|..|..++..|.        +..|.++|..+.
T Consensus         2 HivI~G~g~~g~~l~~~L~--------~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--------GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--------GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--------CCCCEEEEcchH
Confidence            3899999999999998883        457888888764

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.054  Score=39.67  Aligned_cols=34  Identities=12%  Similarity=0.225  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCc-eEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-KVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-~v~vlE~~~   61 (182)
                      ...|+|||+|..|+-+|..|+.      .|+ +++|+|.+.
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl------~GVg~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVL------PGIGSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHT------TTCSEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHH------hcCCEEEEEcCCc
Confidence            4689999999999999999999      886 899998764

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.67  E-value=0.12  Score=33.67  Aligned_cols=31  Identities=19%  Similarity=0.214  Sum_probs=25.2

Q ss_pred             EEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      |+|-|| +-.|.++|..|++      .|.+|++++++.
T Consensus         4 vlITGas~GIG~aiA~~la~------~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEA------AGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCh
Confidence            456664 4479999999999      899999999875

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.59  E-value=0.075  Score=32.54  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=24.3

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|.|+ |+.|+++ .++++.     .|.+|+.+++.+.
T Consensus        30 ~VlI~ga~G~vG~~a-iqlak~-----~G~~vi~~~~~~~   63 (171)
T d1iz0a2          30 KVLVQAAAGALGTAA-VQVARA-----MGLRVLAAASRPE   63 (171)
T ss_dssp             EEEESSTTBHHHHHH-HHHHHH-----TTCEEEEEESSGG
T ss_pred             EEEEEeccccchhhh-hhhhcc-----ccccccccccccc
Confidence            4788796 8889766 445553     7999999987653

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.39  E-value=0.098  Score=33.55  Aligned_cols=37  Identities=27%  Similarity=0.285  Sum_probs=29.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+..|+|.|+|-+|+.+|..|.+.     .-.++.++|+...
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~-----~~~~i~~~D~~GL   61 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDL-----GVKNVVAVDRKGI   61 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-----TCCEEEEEETTEE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHh-----cccceEeecceeE
Confidence            456799999999999999998773     2247999998753

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=92.36  E-value=0.13  Score=32.53  Aligned_cols=33  Identities=15%  Similarity=0.211  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ..|+|-|.|-+|..+|..|.+      .|.+|++.|.++
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~------~Gakvvv~d~d~   60 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAE------AGAQLLVADTDT   60 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHH------CCCEEEEecchH
Confidence            469999999999999999999      899999998763

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.28  E-value=0.17  Score=31.85  Aligned_cols=35  Identities=23%  Similarity=0.158  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ..|.|||.|-.|..+|..|.-      .|.+|+.+++....
T Consensus        46 ktvgIiG~G~IG~~va~~l~~------fg~~v~~~d~~~~~   80 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKG------FGAKVIAYDPYPMK   80 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSCCS
T ss_pred             eeeeeeecccccccccccccc------cceeeeccCCccch
Confidence            469999999999999998877      79999999987643

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.24  E-value=0.11  Score=33.46  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=27.3

Q ss_pred             cEEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|.||+ -.|.++|..|++      .|.+|+++++...
T Consensus         4 kVlITGas~GIG~aia~~l~~------~G~~V~~~~~~~~   37 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKK------NGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTEEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHH------CCCEEEEEECCch
Confidence            47888864 468889999999      8999999998764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=92.17  E-value=0.23  Score=33.08  Aligned_cols=31  Identities=16%  Similarity=0.246  Sum_probs=25.4

Q ss_pred             EEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|-| +|-.|.++|..|++      .|.+|++.+|+.
T Consensus        28 alITGas~GIG~aiA~~la~------~Ga~Vii~~r~~   59 (294)
T d1w6ua_          28 AFITGGGTGLGKGMTTLLSS------LGAQCVIASRKM   59 (294)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------cCCEEEEEECCH
Confidence            44545 56679999999999      899999999875

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.09  E-value=0.13  Score=33.15  Aligned_cols=33  Identities=18%  Similarity=0.398  Sum_probs=27.4

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|.|| |-.|.++|..|++      +|.+|+++++...
T Consensus         4 ~vlITGas~GIG~a~a~~l~~------~G~~V~~~~~~~~   37 (236)
T d1dhra_           4 RVLVYGGRGALGSRCVQAFRA------RNWWVASIDVVEN   37 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT------TTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHH------CCCEEEEEeCCcc
Confidence            4788887 4478999999999      8999999988754

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.96  E-value=0.12  Score=33.21  Aligned_cols=33  Identities=30%  Similarity=0.490  Sum_probs=26.5

Q ss_pred             EEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCCC
Q psy2240          25 VVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAEV   63 (182)
Q Consensus        25 v~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~   63 (182)
                      ++|-|| +-.|.++|..|++      .|.+|++.++....
T Consensus         4 alITGas~GIG~aiA~~la~------~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKA------RGYRVVVLDLRREG   37 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------HTCEEEEEESSCCS
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCccc
Confidence            455565 4568999999999      89999999988653

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.93  E-value=0.13  Score=32.79  Aligned_cols=20  Identities=30%  Similarity=0.454  Sum_probs=18.1

Q ss_pred             ccEEEECCChHHHHHHHHHH
Q psy2240          23 ADVVIVGGGPAGMAAAIRLK   42 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~   42 (182)
                      ..|+|||+|-+++=+|..|.
T Consensus        40 k~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          40 ARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             SEEEEECCSHHHHHHHHHHH
T ss_pred             ceEEEECCCchhHhhhhhhc
Confidence            47999999999999998876

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.77  E-value=0.16  Score=34.73  Aligned_cols=33  Identities=27%  Similarity=0.287  Sum_probs=29.0

Q ss_pred             cEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|.| .|..|..++..|.+      +|.+|+++++.+.
T Consensus        17 KILVTGgsGfIGs~lv~~L~~------~g~~V~~~d~~~~   50 (363)
T d2c5aa1          17 KISITGAGGFIASHIARRLKH------EGHYVIASDWKKN   50 (363)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHH------CcCEEEEEeCCCc
Confidence            599998 78999999999999      8999999987653

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.74  E-value=0.16  Score=34.67  Aligned_cols=33  Identities=15%  Similarity=0.144  Sum_probs=29.2

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .-|+|+|| |..|..++..|.+      .|.+|.++-|++
T Consensus         4 ktIlVtGatG~iG~~lv~~Ll~------~G~~V~~l~R~~   37 (350)
T d1xgka_           4 KTIAVVGATGRQGASLIRVAAA------VGHHVRAQVHSL   37 (350)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHH------TTCCEEEEESCS
T ss_pred             CEEEEECCChHHHHHHHHHHHh------CCCeEEEEECCc
Confidence            45999996 9999999999999      899999998764

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=91.64  E-value=0.14  Score=33.54  Aligned_cols=32  Identities=19%  Similarity=0.420  Sum_probs=26.4

Q ss_pred             EEEECCCh-HHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          25 VVIVGGGP-AGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        25 v~IIGgG~-~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ++|.||+- .|.++|..|++      .|.+|++.+++..
T Consensus        12 alITGas~GIG~aia~~la~------~Ga~V~i~~r~~~   44 (260)
T d1h5qa_          12 IIVTGGNRGIGLAFTRAVAA------AGANVAVIYRSAA   44 (260)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTEEEEEEESSCT
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCHH
Confidence            66667643 78999999999      8999999999864

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=0.15  Score=33.22  Aligned_cols=31  Identities=26%  Similarity=0.365  Sum_probs=24.8

Q ss_pred             EEEECCCh-HHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGGP-AGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG~-~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.||+- .|..+|..|++      .|.+|++.+|..
T Consensus        10 ~lITGas~GIG~~ia~~la~------~G~~V~l~~r~~   41 (244)
T d1yb1a_          10 VLITGAGHGIGRLTAYEFAK------LKSKLVLWDINK   41 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            44446544 68889999999      899999999985

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.50  E-value=0.13  Score=31.24  Aligned_cols=38  Identities=18%  Similarity=0.382  Sum_probs=24.4

Q ss_pred             cEEEECCChHHHHHHHH-HHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMAAAIR-LKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~-l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|.|||||-.|.+.++. |.+. ....+.-++.++|.++.
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~-~~~~~~~el~L~Did~~   40 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDI-SEDVRIDEVIFYDIDEE   40 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHH-TTTSCCCEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHhc-ccccCccEEEEEecCcH
Confidence            48999999888776654 3221 11123458999997653

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.46  E-value=0.12  Score=33.11  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhh--------------cCCC-ceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEK--------------DGKE-LKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~--------------~~~g-~~v~vlE~~~~   62 (182)
                      -+|+|||+|-+++=+|..|.+..++              +..| .+|.++-|+..
T Consensus        40 k~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             ceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            5799999999999999999872100              0013 47999988764

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.19  E-value=0.2  Score=32.51  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=25.7

Q ss_pred             cEEEE--CCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIV--GGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~II--GgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .+++|  |++-.|.++|..|++      .|.+|++.+|++
T Consensus         7 K~alITGas~GIG~aia~~la~------~G~~Vi~~~r~~   40 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAR------EGAKVIATDINE   40 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH------cCCEEEEEeCCH
Confidence            34555  455678999999999      899999999875

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=91.16  E-value=0.23  Score=31.14  Aligned_cols=34  Identities=21%  Similarity=0.078  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...|.|||-|-.|..+|..|.-      .|.+|..+++..
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~------fg~~V~~~d~~~   76 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEG------FGAKVITYDIFR   76 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSC
T ss_pred             CCeEEEecccccchhHHHhHhh------hcccccccCccc
Confidence            3569999999999999999977      799999998764

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=91.00  E-value=0.15  Score=33.35  Aligned_cols=32  Identities=9%  Similarity=0.091  Sum_probs=26.0

Q ss_pred             cEEEECC-Ch--HHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGG-GP--AGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGg-G~--~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      -++|.|+ |-  .|.++|..|++      .|.+|++..++.
T Consensus         8 ~~lItGaag~~GIG~aiA~~la~------~Ga~Vil~~~~~   42 (268)
T d2h7ma1           8 RILVSGIITDSSIAFHIARVAQE------QGAQLVLTGFDR   42 (268)
T ss_dssp             EEEECCCSSTTCHHHHHHHHHHH------TTCEEEEEECSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH------cCCEEEEEeCCh
Confidence            4888884 32  58999999999      899999998764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.99  E-value=0.21  Score=32.58  Aligned_cols=30  Identities=27%  Similarity=0.499  Sum_probs=24.6

Q ss_pred             EEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          26 VIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        26 ~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|-||+ -.|.++|..|++      .|.+|++.+|+.
T Consensus         5 lITGas~GIG~aia~~la~------~Ga~V~~~~r~~   35 (255)
T d1gega_           5 LVTGAGQGIGKAIALRLVK------DGFAVAIADYND   35 (255)
T ss_dssp             EEETTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEcCCccHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            555654 479999999999      899999999875

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.2  Score=32.40  Aligned_cols=32  Identities=31%  Similarity=0.468  Sum_probs=25.7

Q ss_pred             EEEECCCh-HHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          25 VVIVGGGP-AGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        25 v~IIGgG~-~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ++|.||+- .|.++|..|++      .|.+|++++|+..
T Consensus         8 alITGas~GIG~aia~~la~------~G~~V~~~~r~~~   40 (248)
T d2o23a1           8 AVITGGASGLGLATAERLVG------QGASAVLLDLPNS   40 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEECTTS
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEeCChH
Confidence            56666543 68889999999      8999999998764

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.88  E-value=0.086  Score=35.33  Aligned_cols=39  Identities=18%  Similarity=0.301  Sum_probs=29.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-------eEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-------KVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-------~v~vlE~~~   61 (182)
                      .+..|+|.|+|-+|+.+|..|......  .|+       ++.++|+..
T Consensus        24 ~d~kiv~~GAGsAg~gia~ll~~~~~~--~g~~~~~a~~~i~lvD~~G   69 (294)
T d1pj3a1          24 SEHKILFLGAGEAALGIANLIVMSMVE--NGLSEQEAQKKIWMFDKYG   69 (294)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHH--TTCCHHHHHHTEEEEETTE
T ss_pred             HHcEEEEECccHHHHHHHHHHHHHHHh--cCCchhhccccEEEEeCCC
Confidence            356899999999999999987653221  233       599999874

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=90.86  E-value=0.21  Score=33.92  Aligned_cols=34  Identities=21%  Similarity=0.123  Sum_probs=29.8

Q ss_pred             ccEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      -.|+|.| +|..|..++..|.+      .|.+|..+++...
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~------~g~~V~~~~r~~~   43 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQT------MGATVKGYSLTAP   43 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH------TTCEEEEEESSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHH------CCCEEEEEECCCC
Confidence            3699999 67899999999999      8999999998754

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=90.71  E-value=0.11  Score=31.75  Aligned_cols=40  Identities=25%  Similarity=0.323  Sum_probs=24.4

Q ss_pred             ccccEEEECCChHHHHHHH--HHHHhhhhcCCCceEEEEecCCC
Q psy2240          21 DVADVVIVGGGPAGMAAAI--RLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~--~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      +.+.|+|||||-.|...++  .|.+.  +..++-+++++|-++.
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~--~~l~~~eivL~Did~~   43 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHL--EEFPIRKLKLYDNDKE   43 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTT--TTSCEEEEEEECSCHH
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhh--hhcCCCEEEEEcCChh
Confidence            3568999999987755333  22221  1112347999997753

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.70  E-value=0.19  Score=32.71  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=26.0

Q ss_pred             cEEEECCC---hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGG---PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG---~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      -++|.||+   -.|.++|..|++      .|.+|++..+..
T Consensus        10 ~alITGas~~~GIG~aiA~~la~------~Ga~V~i~~~~~   44 (256)
T d1ulua_          10 KALVMGVTNQRSLGFAIAAKLKE------AGAEVALSYQAE   44 (256)
T ss_dssp             EEEEESCCCSSSHHHHHHHHHHH------TTCEEEEEESSG
T ss_pred             EEEEECCCCCchHHHHHHHHHHH------CCCEEEEEeCcH
Confidence            37788852   259999999999      899999988764

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=90.55  E-value=0.27  Score=32.39  Aligned_cols=32  Identities=28%  Similarity=0.381  Sum_probs=25.3

Q ss_pred             cEEEE-CC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIV-GG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~II-Gg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|| || +-.|.++|..|++      .|.+|++..+..
T Consensus         3 pVAlITGas~GIG~aiA~~la~------~Ga~V~i~~~~~   36 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHA------EGYAVCLHYHRS   36 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH------TTCEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH------cCCEEEEEeCCC
Confidence            36666 54 4579999999999      899999987653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=90.54  E-value=0.24  Score=32.53  Aligned_cols=31  Identities=29%  Similarity=0.414  Sum_probs=24.7

Q ss_pred             EEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.|| +-.|.++|..|++      .|.+|++.+++.
T Consensus         9 alITGas~GIG~aia~~la~------~Ga~V~i~~r~~   40 (268)
T d2bgka1           9 AIITGGAGGIGETTAKLFVR------YGAKVVIADIAD   40 (268)
T ss_dssp             EEEESTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            555564 3468889999999      899999999874

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.50  E-value=0.26  Score=32.26  Aligned_cols=31  Identities=23%  Similarity=0.321  Sum_probs=24.2

Q ss_pred             EEEE-CC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIV-GG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~II-Gg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +++| || +-.|.++|..|++      .|.+|++.++..
T Consensus         6 ~alITGas~GIG~aiA~~la~------~Ga~V~~~~r~~   38 (260)
T d1x1ta1           6 VAVVTGSTSGIGLGIATALAA------QGADIVLNGFGD   38 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHHH------TTCEEEEECCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHH------CCCEEEEEeCCc
Confidence            4444 44 3368899999999      899999999874

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=90.35  E-value=0.19  Score=33.35  Aligned_cols=31  Identities=19%  Similarity=0.108  Sum_probs=26.0

Q ss_pred             cEEEECCC---hHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          24 DVVIVGGG---PAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        24 dv~IIGgG---~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      -++|-|++   -.|.++|..|++      .|.+|++..+.
T Consensus        10 ~alVTGass~~GIG~aiA~~la~------~Ga~Vvi~~~~   43 (297)
T d1d7oa_          10 RAFIAGIADDNGYGWAVAKSLAA------AGAEILVGTWV   43 (297)
T ss_dssp             EEEEECCSSSSSHHHHHHHHHHH------TTCEEEEEEEH
T ss_pred             EEEEECCCCCchHHHHHHHHHHH------CCCEEEEEeCc
Confidence            48888864   369999999999      89999998764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=90.27  E-value=0.22  Score=32.60  Aligned_cols=31  Identities=26%  Similarity=0.570  Sum_probs=25.4

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.||+ -.|.++|..|++      .|.+|++.+++.
T Consensus         8 alITGas~GIG~aia~~la~------~Ga~V~~~~r~~   39 (260)
T d1zema1           8 CLVTGAGGNIGLATALRLAE------EGTAIALLDMNR   39 (260)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            6666763 368899999999      899999999874

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.20  E-value=0.24  Score=32.32  Aligned_cols=31  Identities=19%  Similarity=0.230  Sum_probs=25.9

Q ss_pred             EEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.|| +-.|.++|..|++      .|.+|++.+++.
T Consensus         8 alVTGas~GIG~aia~~la~------~Ga~V~~~~r~~   39 (256)
T d1k2wa_           8 ALITGSARGIGRAFAEAYVR------EGARVAIADINL   39 (256)
T ss_dssp             EEEETCSSHHHHHHHHHHHH------TTEEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            677776 4468899999999      899999999874

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.20  E-value=0.33  Score=31.67  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=24.5

Q ss_pred             cEEEE-CC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIV-GG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~II-Gg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .++|| || +-.|.++|..|++      .|.+|++.+++.
T Consensus        12 K~alITGas~GIG~aia~~la~------~Ga~V~~~~r~~   45 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFAT------AGASVVVSDINA   45 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHT------TTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            45555 43 3468888999999      899999999874

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=90.20  E-value=0.31  Score=30.44  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..+.|||.|-.|-.+|..|.-      .|.+|..+++...
T Consensus        50 ktvgIiG~G~IG~~va~~l~~------fg~~v~~~d~~~~   83 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKA------FGFNVLFYDPYLS   83 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT------TTCEEEEECTTSC
T ss_pred             ceEEEeccccccccceeeeec------cccceeeccCccc
Confidence            469999999999999999877      7999999998654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.16  E-value=0.27  Score=32.04  Aligned_cols=31  Identities=32%  Similarity=0.287  Sum_probs=25.2

Q ss_pred             EEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.|| +-.|.++|..|++      .|.+|++.+|+.
T Consensus         6 alITGas~GIG~aia~~la~------~Ga~V~i~~r~~   37 (254)
T d2gdza1           6 ALVTGAAQGIGRAFAEALLL------KGAKVALVDWNL   37 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            455565 4479999999999      899999999874

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=90.13  E-value=0.2  Score=32.59  Aligned_cols=33  Identities=6%  Similarity=0.204  Sum_probs=26.0

Q ss_pred             cEEEECCC---hHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGG---PAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG---~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      -++|.||+   -.|.++|..|++      .|.+|++..++..
T Consensus         7 ~~lITGass~~GIG~aiA~~l~~------~G~~V~i~~~~~~   42 (258)
T d1qsga_           7 RILVTGVASKLSIAYGIAQAMHR------EGAELAFTYQNDK   42 (258)
T ss_dssp             EEEECCCCSTTSHHHHHHHHHHH------TTCEEEEEESSTT
T ss_pred             EEEEECCCCchhHHHHHHHHHHH------cCCEEEEEeCCHH
Confidence            36777763   248899999999      8999999998753

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.89  E-value=0.26  Score=31.95  Aligned_cols=32  Identities=22%  Similarity=0.397  Sum_probs=25.8

Q ss_pred             cEEEECCCh-HHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGP-AGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~-~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      -++|.||+- .|.++|..|++      .|.+|++.+|+.
T Consensus         9 ~~lITGas~GIG~aia~~la~------~G~~V~~~~r~~   41 (244)
T d1pr9a_           9 RVLVTGAGKGIGRGTVQALHA------TGARVVAVSRTQ   41 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHH------cCCEEEEEECCH
Confidence            366767543 68889999999      899999999874

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.88  E-value=0.25  Score=32.26  Aligned_cols=31  Identities=29%  Similarity=0.358  Sum_probs=25.5

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.||+ -.|.++|..|++      .|.+|++.+|+.
T Consensus        13 ~lITGas~GIG~aiA~~la~------~G~~Vv~~~r~~   44 (257)
T d1xg5a_          13 ALVTGASGGIGAAVARALVQ------QGLKVVGCARTV   44 (257)
T ss_dssp             EEEESTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            6777754 368889999999      899999999875

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=89.88  E-value=0.3  Score=31.82  Aligned_cols=30  Identities=23%  Similarity=0.455  Sum_probs=24.1

Q ss_pred             EEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          26 VIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        26 ~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|-||+ -.|.++|..|++      .|.+|++.+|+.
T Consensus         6 lITGas~GIG~aia~~la~------~Ga~V~i~~r~~   36 (257)
T d2rhca1           6 LVTGATSGIGLEIARRLGK------EGLRVFVCARGE   36 (257)
T ss_dssp             EEESCSSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            444543 469999999999      899999999874

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=89.84  E-value=0.12  Score=34.74  Aligned_cols=39  Identities=13%  Similarity=0.280  Sum_probs=29.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCc-------eEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKEL-------KVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~-------~v~vlE~~~   61 (182)
                      .+..|+|.|+|-+|+.+|..|.+....  .|+       ++.++|+..
T Consensus        24 ~d~kivi~GAGaAg~gia~~l~~~~~~--~G~~~~~a~~~i~~vD~~G   69 (308)
T d1o0sa1          24 SQEKYLFFGAGAASTGIAEMIVHQMQN--EGISKEEACNRIYLMDIDG   69 (308)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHT--TTCCHHHHHHTEEEEETTE
T ss_pred             HHcEEEEECcCHHHHHHHHHHHHHHHh--cCCchhhhhceEEEEeCCC
Confidence            356799999999999999988764322  232       599999874

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.60  E-value=0.27  Score=31.98  Aligned_cols=31  Identities=19%  Similarity=0.352  Sum_probs=25.7

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|-||+ -.|.++|..|++      .|.+|++.++..
T Consensus         8 ~lITGas~GIG~aia~~la~------~Ga~V~i~~r~~   39 (251)
T d1vl8a_           8 ALVTGGSRGLGFGIAQGLAE------AGCSVVVASRNL   39 (251)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            6777764 368899999999      899999999874

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=89.53  E-value=0.37  Score=31.28  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=25.6

Q ss_pred             EEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          25 VVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        25 v~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ++|-| ++-.|.++|..|++      .|.+|++.+++..
T Consensus         8 alITGas~GIG~aia~~la~------~G~~V~~~~~~~~   40 (248)
T d2d1ya1           8 VLVTGGARGIGRAIAQAFAR------EGALVALCDLRPE   40 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEESSTT
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCHH
Confidence            55656 34468899999999      8999999998754

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.47  E-value=0.29  Score=31.66  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=25.8

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.||+ -.|.++|..|++      .|.+|++.+|..
T Consensus         8 alITGas~GIG~aia~~la~------~Ga~V~~~~r~~   39 (242)
T d1cyda_           8 ALVTGAGKGIGRDTVKALHA------SGAKVVAVTRTN   39 (242)
T ss_dssp             EEEESTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            6777764 468899999999      899999999874

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.44  E-value=0.34  Score=31.08  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=26.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      -++|.|| +-.|.++|..|++      .|.+|++.+|+.
T Consensus         6 ~~lVTGas~GIG~aia~~l~~------~Ga~V~~~~r~~   38 (234)
T d1o5ia_           6 GVLVLAASRGIGRAVADVLSQ------EGAEVTICARNE   38 (234)
T ss_dssp             EEEEESCSSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            3788886 4478889999999      899999999875

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.41  E-value=0.23  Score=32.35  Aligned_cols=31  Identities=16%  Similarity=0.221  Sum_probs=24.5

Q ss_pred             EEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.|| +-.|.++|..|++      .|.+|++.+|+.
T Consensus        13 alITGas~GIG~a~a~~la~------~Ga~V~~~~r~~   44 (251)
T d2c07a1          13 ALVTGAGRGIGREIAKMLAK------SVSHVICISRTQ   44 (251)
T ss_dssp             EEEESTTSHHHHHHHHHHTT------TSSEEEEEESSH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------cCCEEEEEECCH
Confidence            455575 3468889999999      899999999874

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.40  E-value=0.41  Score=30.92  Aligned_cols=31  Identities=16%  Similarity=0.222  Sum_probs=25.7

Q ss_pred             EEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|-|| +-.|.++|..|++      .|.+|++.+|+.
T Consensus         8 ~lITGas~GIG~aia~~l~~------~G~~V~~~~r~~   39 (242)
T d1ulsa_           8 VLITGAAHGIGRATLELFAK------EGARLVACDIEE   39 (242)
T ss_dssp             EEEESTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            566665 3479999999999      899999999875

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=89.36  E-value=0.33  Score=32.05  Aligned_cols=31  Identities=35%  Similarity=0.501  Sum_probs=26.0

Q ss_pred             EEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|-|| +-.|.++|..|++      .|.+|++.+|+.
T Consensus         8 alITGas~GIG~aia~~la~------~Ga~V~i~~r~~   39 (276)
T d1bdba_           8 VLITGGASGLGRALVDRFVA------EGAKVAVLDKSA   39 (276)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            667675 3569999999999      899999999875

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=89.35  E-value=0.35  Score=31.62  Aligned_cols=32  Identities=19%  Similarity=0.271  Sum_probs=26.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      -++|.|| +-.|.++|..|++      .|.+|++.+|.+
T Consensus         8 ~alITGas~GIG~aia~~la~------~G~~V~i~~r~~   40 (258)
T d1ae1a_           8 TALVTGGSKGIGYAIVEELAG------LGARVYTCSRNE   40 (258)
T ss_dssp             EEEEESCSSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            3788884 4478899999999      899999999875

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=89.25  E-value=0.3  Score=31.86  Aligned_cols=31  Identities=29%  Similarity=0.382  Sum_probs=26.0

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.||+ -.|.++|..|++      .|.+|++.+|..
T Consensus         8 alVTGas~GIG~aia~~la~------~Ga~V~~~~r~~   39 (254)
T d1hdca_           8 VIITGGARGLGAEAARQAVA------AGARVVLADVLD   39 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCcCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            6777765 368899999999      899999999875

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=89.24  E-value=0.34  Score=31.59  Aligned_cols=32  Identities=22%  Similarity=0.326  Sum_probs=25.4

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ++|.||+ -.|..+|.+|++      .|.+|+++.+...
T Consensus         8 vlITGgs~GIG~~~A~~la~------~G~~vii~~r~~~   40 (254)
T d1sbya1           8 VIFVAALGGIGLDTSRELVK------RNLKNFVILDRVE   40 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TCCSEEEEEESSC
T ss_pred             EEEecCCCHHHHHHHHHHHH------CCCEEEEEECCcc
Confidence            6677765 368999999999      8999999976653

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.36  Score=31.41  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=25.8

Q ss_pred             EEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|-|| +-.|.++|..|++      .|.+|++.+|+.
T Consensus         9 alITGas~GIG~aia~~la~------~Ga~V~i~~r~~   40 (250)
T d1ydea1           9 VVVTGGGRGIGAGIVRAFVN------SGARVVICDKDE   40 (250)
T ss_dssp             EEEETCSSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            677775 3468899999999      899999999874

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=89.16  E-value=0.36  Score=32.31  Aligned_cols=41  Identities=20%  Similarity=0.305  Sum_probs=29.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCC-----CceEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGK-----ELKVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~-----g~~v~vlE~~~   61 (182)
                      .+..|+|.|+|.+|+.+|..|.......|.     -.++.++|+..
T Consensus        24 ~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kG   69 (298)
T d1gq2a1          24 SDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKG   69 (298)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTE
T ss_pred             HHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCC
Confidence            356899999999999999988653211110     12799999875

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=89.16  E-value=0.32  Score=31.44  Aligned_cols=32  Identities=16%  Similarity=0.313  Sum_probs=26.3

Q ss_pred             EEEECCCh-HHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          25 VVIVGGGP-AGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        25 v~IIGgG~-~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ++|.||+- .|.++|..|++      .|.+|++..|+..
T Consensus         8 alItGas~GIG~aia~~l~~------~G~~V~~~~r~~~   40 (241)
T d2a4ka1           8 ILVTGAASGIGRAALDLFAR------EGASLVAVDREER   40 (241)
T ss_dssp             EEEESTTSHHHHHHHHHHHH------TTCEEEEEESCHH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCHH
Confidence            56667654 78899999999      8999999998853

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=89.15  E-value=0.39  Score=31.14  Aligned_cols=31  Identities=26%  Similarity=0.399  Sum_probs=25.4

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.||+ -.|.++|..|++      .|.+|++.++.+
T Consensus         8 alVTGas~GIG~aia~~la~------~Ga~V~~~~~~~   39 (247)
T d2ew8a1           8 AVITGGANGIGRAIAERFAV------EGADIAIADLVP   39 (247)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCc
Confidence            5666763 468899999999      899999999875

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=89.15  E-value=0.31  Score=31.87  Aligned_cols=31  Identities=42%  Similarity=0.673  Sum_probs=25.5

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|-||+ -.|.++|..|++      .|.+|++.++..
T Consensus         7 alITGas~GIG~aia~~la~------~Ga~V~i~~r~~   38 (258)
T d1iy8a_           7 VLITGGGSGLGRATAVRLAA------EGAKLSLVDVSS   38 (258)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            5666764 368899999999      899999999875

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.95  E-value=0.36  Score=31.65  Aligned_cols=32  Identities=19%  Similarity=0.351  Sum_probs=26.1

Q ss_pred             cEEEECCCh-HHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGP-AGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~-~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      -++|.||+- .|.++|..|++      .|.+|++..|+.
T Consensus        16 ~alITGassGIG~aiA~~la~------~G~~Vil~~r~~   48 (269)
T d1xu9a_          16 KVIVTGASKGIGREMAYHLAK------MGAHVVVTARSK   48 (269)
T ss_dssp             EEEESSCSSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            367777543 68889999999      899999999874

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.92  E-value=0.33  Score=29.80  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ...|+|||=|.-|-+-|+.|..      .|++|+|==|.
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrD------SG~~V~VGLr~   48 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKD------SGVDVTVGLRS   48 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHH------TTCCEEEECCT
T ss_pred             CCEEEEEeeCcHhHHHHhhhhh------cCCCEEEEcCC
Confidence            3469999999999999999999      89999886553

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.87  E-value=0.39  Score=31.40  Aligned_cols=31  Identities=29%  Similarity=0.447  Sum_probs=24.3

Q ss_pred             EEEE-CC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIV-GG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~II-Gg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|| || +-.|.++|..|++      .|.+|++.+|+.
T Consensus         7 valVTGas~GIG~aia~~la~------~Ga~V~~~~r~~   39 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAR------EGAKVTITGRHA   39 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEEeCcCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            4444 43 4468889999999      899999999874

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=88.79  E-value=0.2  Score=30.63  Aligned_cols=35  Identities=9%  Similarity=-0.069  Sum_probs=24.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      -.|+|+|||...-.++.++++.     .|.+|+..++++.
T Consensus        30 ~~Vlv~ga~g~vG~~~iqlak~-----~Ga~Vi~~~~s~~   64 (179)
T d1qora2          30 EQFLFHAAAGGVGLIACQWAKA-----LGAKLIGTVGTAQ   64 (179)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHH-----HTCEEEEEESSHH
T ss_pred             CEEEEEccccccchHHHHHHHH-----hCCeEeecccchH
Confidence            3588886666444455666664     6899999988753

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.77  E-value=0.4  Score=31.03  Aligned_cols=31  Identities=16%  Similarity=0.235  Sum_probs=25.2

Q ss_pred             EEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|-|| +-.|.++|..|++      .|.+|++.++.+
T Consensus         9 alITGas~GIG~aia~~la~------~G~~V~~~~r~~   40 (244)
T d1nffa_           9 ALVSGGARGMGASHVRAMVA------EGAKVVFGDILD   40 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            555575 3468899999999      899999999875

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.68  E-value=0.49  Score=29.28  Aligned_cols=35  Identities=17%  Similarity=0.191  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...+.|||-|-.|-..|..|.-      .|.+|..+++...
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~------fg~~v~~~d~~~~   78 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAES------LGMYVYFYDIENK   78 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH------TTCEEEEECSSCC
T ss_pred             ceEEEEeecccchhhhhhhccc------ccceEeecccccc
Confidence            3479999999999999998877      7999999997654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=88.62  E-value=0.36  Score=31.55  Aligned_cols=31  Identities=16%  Similarity=0.259  Sum_probs=25.8

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|-||+ -.|.++|..|++      .|.+|++.+|+.
T Consensus        11 alITGas~GIG~aia~~la~------~Ga~V~~~~r~~   42 (259)
T d2ae2a_          11 ALVTGGSRGIGYGIVEELAS------LGASVYTCSRNQ   42 (259)
T ss_dssp             EEEESCSSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            6677764 368899999999      899999999874

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.51  E-value=0.41  Score=31.92  Aligned_cols=33  Identities=21%  Similarity=0.196  Sum_probs=28.4

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|.|| |..|..++..|.+      +|.+|..+++...
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~------~g~~V~~~~r~~~   35 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLE------KGYRVHGLVARRS   35 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTCEEEEEECCCS
T ss_pred             EEEEECCCCHHHHHHHHHHHH------CcCEEEEEECCCC
Confidence            4788886 8899999999998      8999999998753

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=88.44  E-value=0.36  Score=29.93  Aligned_cols=35  Identities=20%  Similarity=0.273  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...+.|||.|-.|...|..|.-      .|.+|..+++...
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~------fg~~v~~~d~~~~   78 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAP------FDVHLHYTDRHRL   78 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGG------GTCEEEEECSSCC
T ss_pred             ccceeeccccccchhhhhhhhc------cCceEEEEeeccc
Confidence            3579999999999999988876      7899999998754

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.33  E-value=0.37  Score=32.25  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=24.8

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.||+ -.|.++|..|++      .|.+|++.+|+.
T Consensus        15 alITGas~GIG~aia~~la~------~Ga~Vvi~~r~~   46 (297)
T d1yxma1          15 AIVTGGATGIGKAIVKELLE------LGSNVVIASRKL   46 (297)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            6666653 368888999999      899999999874

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.24  E-value=0.47  Score=29.29  Aligned_cols=35  Identities=23%  Similarity=0.153  Sum_probs=29.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ...+.|||.|..|-..|..|.-      .|.+|+.+++...
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~------fg~~v~~~d~~~~   78 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAA------FGAYVVAYDPYVS   78 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHT------TTCEEEEECTTSC
T ss_pred             ceeeeeccccchhHHHHHHhhh------ccceEEeecCCCC
Confidence            3469999999999999988876      7999999997653

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=88.21  E-value=0.38  Score=32.50  Aligned_cols=31  Identities=26%  Similarity=0.508  Sum_probs=27.0

Q ss_pred             EEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      |+|+|| |..|..++..|.+      .|.+|+++++..
T Consensus         3 iLItG~tGfIG~~l~~~L~~------~g~~V~~~d~~~   34 (338)
T d1udca_           3 VLVTGGSGYIGSHTCVQLLQ------NGHDVIILDNLC   34 (338)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEECCS
T ss_pred             EEEECCCCHHHHHHHHHHHH------CcCEEEEEECCC
Confidence            888885 7899999999999      899999998743

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=88.13  E-value=0.38  Score=32.88  Aligned_cols=31  Identities=29%  Similarity=0.319  Sum_probs=26.1

Q ss_pred             EEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      |+|.| +|..|..++..|.+      .|.+|+.++|.+
T Consensus         4 vLITGatGfiGs~lv~~Ll~------~g~~V~~~~r~~   35 (357)
T d1db3a_           4 ALITGVTGQDGSYLAEFLLE------KGYEVHGIKRRA   35 (357)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEECC--
T ss_pred             EEEeCCCcHHHHHHHHHHHH------CcCEEEEEECCC
Confidence            55878 78999999999999      899999999854

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.03  E-value=0.3  Score=31.48  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=27.7

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCCCCCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAAEVGG   65 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~~~g   65 (182)
                      ++|-||+ -.|.++|..|++      .|.+|++.+|......
T Consensus        10 ~lITGas~GIG~aia~~la~------~Ga~V~~~~r~~~~~~   45 (237)
T d1uzma1          10 VLVTGGNRGIGLAIAQRLAA------DGHKVAVTHRGSGAPK   45 (237)
T ss_dssp             EEETTTTSHHHHHHHHHHHH------TTCEEEEEESSSCCCT
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCcchhc
Confidence            6666654 378889999999      8999999999875443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=87.60  E-value=0.58  Score=30.57  Aligned_cols=31  Identities=32%  Similarity=0.434  Sum_probs=24.2

Q ss_pred             EEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.|| +-.|.++|..|++      .|.+|++..|..
T Consensus        10 alITGas~GIG~aia~~la~------~G~~Vv~~~r~~   41 (261)
T d1geea_          10 VVITGSSTGLGKSMAIRFAT------EKAKVVVNYRSK   41 (261)
T ss_dssp             EEETTCSSHHHHHHHHHHHH------TTCEEEEEESSC
T ss_pred             EEEeCCCcHHHHHHHHHHHH------CCCEEEEEeCCc
Confidence            444453 4468889999999      899999999875

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.46  E-value=0.36  Score=31.73  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=24.1

Q ss_pred             EEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|-| ++-.|.++|..|++      .|.+|++.+++.
T Consensus        21 ~lITGas~GIG~aia~~la~------~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          21 ALVTGAGRGIGREMAMELGR------RGCKVIVNYANS   52 (272)
T ss_dssp             EEETTTTSHHHHHHHHHHHH------TTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHH------cCCEEEEEeCCc
Confidence            55555 34457788999999      899999998774

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.27  E-value=0.26  Score=30.01  Aligned_cols=37  Identities=16%  Similarity=0.232  Sum_probs=21.8

Q ss_pred             cEEEECCChHHHH--HHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGGGPAGMA--AAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGgG~~Gl~--~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|||||-.|..  .+..+...  +....-.+.++|....
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~--~~~~~~eI~L~Di~e~   41 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRY--HELPVGELWLVDIPEG   41 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTT--TTCCEEEEEEECCGGG
T ss_pred             EEEEECCChhhHHHHHHHHHHhc--cccCCCEEEEEcCCcc
Confidence            5999999966543  33333331  1111248999997653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.96  E-value=0.33  Score=31.99  Aligned_cols=31  Identities=26%  Similarity=0.430  Sum_probs=24.4

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.||+ -.|.++|..|++      .|.+|++.+|+.
T Consensus         8 alVTGas~GIG~aia~~la~------~Ga~V~l~~r~~   39 (272)
T d1xkqa_           8 VIITGSSNGIGRTTAILFAQ------EGANVTITGRSS   39 (272)
T ss_dssp             EEETTCSSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCcCcHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            5555643 368889999999      899999999874

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=86.86  E-value=0.4  Score=31.32  Aligned_cols=40  Identities=10%  Similarity=-0.073  Sum_probs=24.9

Q ss_pred             HHHHcCcEEecCCccceeEEcCCCcEEE--------EEeCCEEEecCC
Q psy2240         140 QAEAMGVEIYPGIPASEVLYHGDGSVKG--------IATGDVGIAKDG  179 (182)
Q Consensus       140 ~~~~~gv~i~~~~~v~~i~~~~~g~~~~--------v~~~~~vi~adG  179 (182)
                      .+++.|++|+++++|++|+.++++..+.        ....|.||.|.|
T Consensus       228 l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p  275 (347)
T d2ivda1         228 LAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAP  275 (347)
T ss_dssp             HHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSC
T ss_pred             HHHHhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCC
Confidence            3445589999999999998766554332        233455655544

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=86.82  E-value=0.38  Score=31.11  Aligned_cols=31  Identities=23%  Similarity=0.244  Sum_probs=24.1

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|-||+ -.|.++|..|++      .|.+|++.+|+.
T Consensus         7 alITGas~GIG~a~a~~l~~------~G~~Vv~~~r~~   38 (243)
T d1q7ba_           7 ALVTGASRGIGRAIAETLAA------RGAKVIGTATSE   38 (243)
T ss_dssp             EEESSCSSHHHHHHHHHHHH------TTCEEEEEESSH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------cCCEEEEEeCCH
Confidence            4444643 368889999999      899999999875

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=86.67  E-value=0.6  Score=29.96  Aligned_cols=32  Identities=19%  Similarity=0.245  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ..|+|-|.|-+|..+|..|.+      .|.+|++.+-+
T Consensus        40 ~~v~IqG~GnVG~~~a~~L~~------~Gakvv~~d~~   71 (230)
T d1leha1          40 LAVSVQGLGNVAKALCKKLNT------EGAKLVVTDVN   71 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH------TTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHH------CCCEEEeeccc
Confidence            469999999999999999999      89999998765

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.38  E-value=0.31  Score=30.75  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=24.4

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCce--EEEEecCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELK--VCLVEKAA   61 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~--v~vlE~~~   61 (182)
                      .|+|.|| |..|..++..|.+      .|.+  |+.+.|.+
T Consensus         5 tVlVtGatG~iG~~l~~~Ll~------~g~~v~v~~~~R~~   39 (252)
T d2q46a1           5 TVLVTGASGRTGQIVYKKLKE------GSDKFVAKGLVRSA   39 (252)
T ss_dssp             EEEEESTTSTTHHHHHHHHHH------TTTTCEEEEEESCH
T ss_pred             EEEEECCccHHHHHHHHHHHH------CCCcEEEEEEcCCH
Confidence            4999994 9999999999998      6765  44455543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.22  E-value=0.38  Score=31.45  Aligned_cols=31  Identities=16%  Similarity=0.208  Sum_probs=24.1

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.||+ -.|.++|..|++      .|.+|++.+|+.
T Consensus        11 alVTGas~GIG~aiA~~la~------~Ga~V~~~~r~~   42 (259)
T d1xq1a_          11 VLVTGGTKGIGHAIVEEFAG------FGAVIHTCARNE   42 (259)
T ss_dssp             EEETTTTSHHHHHHHHHHHH------TTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            5555543 267788999999      899999999874

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=85.84  E-value=0.14  Score=34.67  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=23.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+|+|||+|..+++.  ++.++    ....+|+++|-++.
T Consensus        79 k~VLiiG~G~G~~~~--~ll~~----~~~~~v~~VEiD~~  112 (312)
T d1uira_          79 KRVLIVGGGEGATLR--EVLKH----PTVEKAVMVDIDGE  112 (312)
T ss_dssp             CEEEEEECTTSHHHH--HHTTS----TTCCEEEEEESCHH
T ss_pred             ceEEEeCCCchHHHH--HHHhc----CCcceEEEecCCHH
Confidence            479999999855433  34331    03468999998864

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=85.79  E-value=0.39  Score=31.23  Aligned_cols=31  Identities=19%  Similarity=0.335  Sum_probs=24.1

Q ss_pred             EEEECCC-hHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGGG-PAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGgG-~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.||+ -.|.++|..|++      .|.+|++.+++.
T Consensus         9 alITGas~GIG~aia~~la~------~Ga~V~~~~~~~   40 (253)
T d1hxha_           9 ALVTGGASGVGLEVVKLLLG------EGAKVAFSDINE   40 (253)
T ss_dssp             EEETTTTSHHHHHHHHHHHH------TTCEEEEECSCH
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCEEEEEECCH
Confidence            4444543 368889999999      899999999874

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=85.32  E-value=0.84  Score=28.30  Aligned_cols=34  Identities=21%  Similarity=0.235  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..+.|||.|-.|...|..|.-      .|.+|..+++...
T Consensus        48 ~tvgIiG~G~IG~~va~~l~~------fg~~v~~~d~~~~   81 (191)
T d1gdha1          48 KTLGIYGFGSIGQALAKRAQG------FDMDIDYFDTHRA   81 (191)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT------TTCEEEEECSSCC
T ss_pred             cceEEeecccchHHHHHHHHh------hcccccccccccc
Confidence            469999999999999988876      7999999987654

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=85.19  E-value=0.46  Score=29.06  Aligned_cols=33  Identities=18%  Similarity=0.122  Sum_probs=24.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|.|++...-.+|.+|++.     .|.+|+.+.+++
T Consensus        32 ~VlV~ga~ggvG~~aiqlak~-----~Ga~vi~~~~~~   64 (182)
T d1v3va2          32 TVLVSAAAGAVGSVVGQIAKL-----KGCKVVGAAGSD   64 (182)
T ss_dssp             EEEESSTTSHHHHHHHHHHHH-----TTCEEEEEESSH
T ss_pred             EEEEEeCCCchhHHHHHHHHc-----cCCEEEEeCCCH
Confidence            477778866555667777775     799999987664

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.19  E-value=0.33  Score=29.64  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=23.0

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+|.|| |..|+.+ .++++.     .|.+|+++.+.+
T Consensus        28 ~VlI~ga~g~vG~~~-iqla~~-----~g~~vi~~~~~~   60 (183)
T d1pqwa_          28 RVLIHSATGGVGMAA-VSIAKM-----IGARIYTTAGSD   60 (183)
T ss_dssp             EEEETTTTSHHHHHH-HHHHHH-----HTCEEEEEESSH
T ss_pred             EEEEECCCCCccccc-chhhcc-----ccccceeeeccc
Confidence            4777786 9999875 555554     688998887654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.04  E-value=0.2  Score=33.22  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=23.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..+|+|||+|-.++.  .++.++     ...+|+++|-++.
T Consensus        73 p~~vLiiG~G~G~~~--~~~l~~-----~~~~v~~VEiD~~  106 (276)
T d1mjfa_          73 PKRVLVIGGGDGGTV--REVLQH-----DVDEVIMVEIDED  106 (276)
T ss_dssp             CCEEEEEECTTSHHH--HHHTTS-----CCSEEEEEESCHH
T ss_pred             CceEEEecCCchHHH--HHHHHh-----CCceEEEecCCHH
Confidence            458999999985543  343342     4468999998764

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.92  E-value=0.69  Score=31.86  Aligned_cols=29  Identities=38%  Similarity=0.812  Sum_probs=25.7

Q ss_pred             cEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEe
Q psy2240          24 DVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVE   58 (182)
Q Consensus        24 dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE   58 (182)
                      .|+|.| +|..|..++..|.+      .|.+|+++|
T Consensus         3 kILVTGatGfiG~~lv~~Ll~------~g~~V~~iD   32 (393)
T d1i24a_           3 RVMVIGGDGYCGWATALHLSK------KNYEVCIVD   32 (393)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTCEEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHH------CcCEEEEEe
Confidence            488887 47799999999999      899999997

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.77  E-value=0.66  Score=28.28  Aligned_cols=32  Identities=16%  Similarity=0.191  Sum_probs=27.5

Q ss_pred             ccEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      .+++||| +-+.|.=+|..|++      +|..|++....
T Consensus        30 K~vvVIGrS~iVG~Pla~lL~~------~gaTVt~~~~~   62 (171)
T d1edza1          30 KKCIVINRSEIVGRPLAALLAN------DGATVYSVDVN   62 (171)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHT------TSCEEEEECSS
T ss_pred             CEEEEECCccccHHHHHHHHHH------CCCEEEEeccc
Confidence            4799999 55789999999999      89999988755

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=84.58  E-value=0.81  Score=27.72  Aligned_cols=33  Identities=12%  Similarity=0.267  Sum_probs=29.1

Q ss_pred             ccEEEECCCh-HHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          23 ADVVIVGGGP-AGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        23 ~dv~IIGgG~-~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .+++|||.+. .|.-+|..|.+      .|..|++..+..
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~------~gatVt~~h~~t   71 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLL------AGCTTTVTHRFT   71 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHT------TTCEEEEECSSC
T ss_pred             ceEEEEeccccccHHHHHHHHH------hhcccccccccc
Confidence            5799999776 99999999999      899999998765

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=84.52  E-value=0.67  Score=28.52  Aligned_cols=32  Identities=19%  Similarity=0.181  Sum_probs=21.7

Q ss_pred             ccEEEEC--CChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVG--GGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIG--gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      .+++|+.  +|..|+ +|.++++.     .|.+|+..=+.
T Consensus        30 ~~vli~~ga~g~vG~-~aiqlAk~-----~Ga~vI~~v~~   63 (189)
T d1gu7a2          30 KDWFIQNGGTSAVGK-YASQIGKL-----LNFNSISVIRD   63 (189)
T ss_dssp             TCEEEESCTTSHHHH-HHHHHHHH-----HTCEEEEEECC
T ss_pred             CEEEEEeCCCchHHH-HHHHHHhh-----cCCeEEEEEec
Confidence            4799983  455554 55777775     68898877543

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=83.99  E-value=0.37  Score=31.32  Aligned_cols=32  Identities=19%  Similarity=0.327  Sum_probs=25.5

Q ss_pred             EEEECCCh-HHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          25 VVIVGGGP-AGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        25 v~IIGgG~-~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ++|-||+- .|.++|..|++      .|.+|++.++...
T Consensus         3 AlVTGas~GiG~aiA~~la~------~Ga~V~i~~r~~~   35 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSE------AGHTVACHDESFK   35 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHH------TTCEEEECCGGGG
T ss_pred             EEEECCCCHHHHHHHHHHHH------CCCEEEEEECCHH
Confidence            45666543 69999999999      8999999988753

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.91  E-value=0.89  Score=30.28  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=26.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      .|+|.|| |..|..++.+|.+      .|.+|+.+++.
T Consensus         3 KIlVtG~sGfiG~~lv~~L~~------~g~~V~~~d~~   34 (312)
T d2b69a1           3 RILITGGAGFVGSHLTDKLMM------DGHEVTVVDNF   34 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHH------CcCEEEEEeCC
Confidence            5888885 7799999999988      89999999864

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.83  E-value=0.47  Score=28.26  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=25.2

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|-+||-|..|...|.+|.+      .|..+ +..+.+
T Consensus         2 kIg~IGlG~MG~~ma~~L~~------~g~~~-~~~~~~   32 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLAR------RFPTL-VWNRTF   32 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHT------TSCEE-EECSST
T ss_pred             eEEEEeHHHHHHHHHHHHHh------CCCEE-EEeCCH
Confidence            48999999999999999998      67654 565554

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=83.83  E-value=0.26  Score=32.64  Aligned_cols=34  Identities=26%  Similarity=0.470  Sum_probs=22.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+|+|||+|-.+++.  .+.++.    ...+|+++|=++.
T Consensus        77 ~~vLiiGgG~G~~~~--~~l~~~----~~~~i~~VEID~~  110 (274)
T d1iy9a_          77 EHVLVVGGGDGGVIR--EILKHP----SVKKATLVDIDGK  110 (274)
T ss_dssp             CEEEEESCTTCHHHH--HHTTCT----TCSEEEEEESCHH
T ss_pred             ceEEecCCCCcHHHH--HHHhcC----CcceEEEecCCHH
Confidence            579999999855433  333310    2358999997764

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=83.80  E-value=0.96  Score=30.38  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=26.2

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCC-ceEEEEecCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~   61 (182)
                      .|+|.|| |..|..++..|.+      .| .+|..+++..
T Consensus         2 KILITG~tGfiG~~l~~~Ll~------~g~~~V~~ld~~~   35 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLR------EDHYEVYGLDIGS   35 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHH------STTCEEEEEESCC
T ss_pred             EEEEECCCcHHHHHHHHHHHH------CCCCEEEEEeCCC
Confidence            3889986 7799999999987      67 5899998764

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.78  E-value=0.85  Score=30.73  Aligned_cols=31  Identities=16%  Similarity=0.340  Sum_probs=27.2

Q ss_pred             cEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          24 DVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        24 dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      .|+|.| .|..|..++.+|.+      .|.+|+++|+-
T Consensus         4 KILITG~tGfIGs~lv~~Ll~------~g~~V~~ld~~   35 (346)
T d1ek6a_           4 KVLVTGGAGYIGSHTVLELLE------AGYLPVVIDNF   35 (346)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTCCEEEEECS
T ss_pred             eEEEECCCcHHHHHHHHHHHH------CcCEEEEEECC
Confidence            588888 58899999999998      89999999864

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.18  E-value=0.78  Score=28.53  Aligned_cols=32  Identities=25%  Similarity=0.310  Sum_probs=26.0

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCc--eEEEEecCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKEL--KVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~--~v~vlE~~~   61 (182)
                      .|+|.|| |..|..+..+|.+      .|.  +|+++-|.+
T Consensus         4 kIlItGatG~iG~~lv~~L~~------~~~~~~v~~~~r~~   38 (212)
T d2a35a1           4 RVLLAGATGLTGEHLLDRILS------EPTLAKVIAPARKA   38 (212)
T ss_dssp             EEEEECTTSHHHHHHHHHHHH------CTTCCEEECCBSSC
T ss_pred             EEEEECCCcHHHHHHHHHHHh------CCCeEEEEEEeCCc
Confidence            6999999 9999999999988      675  666665554

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=83.10  E-value=1.3  Score=29.39  Aligned_cols=31  Identities=16%  Similarity=0.230  Sum_probs=26.3

Q ss_pred             cEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          24 DVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        24 dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      .|+|.| .|..|..+...|.+      +|.+|+++++-
T Consensus         2 KILVTGatGfIGs~lv~~Ll~------~g~~V~~id~~   33 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALS------QGIDLIVFDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHH------CcCEEEEEECC
Confidence            477776 58899999999998      89999999854

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=83.01  E-value=0.97  Score=29.18  Aligned_cols=30  Identities=33%  Similarity=0.309  Sum_probs=27.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEe
Q psy2240          23 ADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVE   58 (182)
Q Consensus        23 ~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE   58 (182)
                      ..|+|=|.|-+|..+|..|.+      .|.+|+-+.
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~------~Gakvv~vs   61 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEK------MGAKVIAVS   61 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT------TTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHH------cCCeEEEee
Confidence            579999999999999999999      899987665

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=82.34  E-value=0.77  Score=29.60  Aligned_cols=31  Identities=32%  Similarity=0.352  Sum_probs=22.6

Q ss_pred             EEEE-CC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIV-GG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~II-Gg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      |++| || +-.|.++|..|++      .|.+|++.+++.
T Consensus         3 V~lITGas~GIG~a~a~~la~------~Ga~V~i~~~~~   35 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGK------AGCKVLVNYARS   35 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHH------TTCEEEEEESSC
T ss_pred             EEEEeCCCcHHHHHHHHHHHH------CCCEEEEEeCCC
Confidence            5555 43 3368888899999      899999876553

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=82.14  E-value=0.49  Score=30.81  Aligned_cols=37  Identities=19%  Similarity=0.202  Sum_probs=22.8

Q ss_pred             cEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      -|+|.| ||..=.++|..|+.....  .|.+|++||.+++
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~--~G~rVllID~D~q   40 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHA--MGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEEEECTT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHh--CCCcEEEEecCCC
Confidence            377888 555333344443332222  6899999999875

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=82.07  E-value=1.8  Score=23.08  Aligned_cols=32  Identities=22%  Similarity=0.190  Sum_probs=25.1

Q ss_pred             cEEEECCChHHHH-HHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMA-AAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~-~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|=+||-|-+|++ +|..|.+      .|++|.--|+..
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~------~G~~VsGSD~~~   35 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFS------NGNDVYGSNIEE   35 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTCEEEEECSSC
T ss_pred             EEEEEeECHHHHHHHHHHHHh------CCCeEEEEeCCC
Confidence            3667888888886 4777777      899999998764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.06  E-value=0.78  Score=29.79  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=23.0

Q ss_pred             EEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|-|| +-.|..+|..|++      .|.+|++..+..
T Consensus         9 alITGas~GIG~aia~~la~------~G~~Vvi~~~~~   40 (259)
T d1ja9a_           9 ALTTGAGRGIGRGIAIELGR------RGASVVVNYGSS   40 (259)
T ss_dssp             EEETTTTSHHHHHHHHHHHH------TTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHH------cCCEEEEEcCCC
Confidence            455554 3478889999999      899999876543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.96  E-value=0.26  Score=33.08  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=23.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          22 VADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        22 ~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      ..+|+|||+|-.|+  +.++.++.    ...+|+++|-++.
T Consensus        90 pk~VLiiGgG~G~~--~r~~l~~~----~~~~i~~VEIDp~  124 (295)
T d1inla_          90 PKKVLIIGGGDGGT--LREVLKHD----SVEKAILCEVDGL  124 (295)
T ss_dssp             CCEEEEEECTTCHH--HHHHTTST----TCSEEEEEESCHH
T ss_pred             CceEEEecCCchHH--HHHHHhcC----CCceEEEecCCHH
Confidence            35899999998654  34554420    2458999998864

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.83  E-value=1.4  Score=29.38  Aligned_cols=31  Identities=23%  Similarity=0.201  Sum_probs=26.9

Q ss_pred             EEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          25 VVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        25 v~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ++|.| .|..|..++..|.+      .|.+|+.+++..
T Consensus         4 ~LVTGatGfiG~~lv~~Ll~------~g~~V~~~~r~~   35 (339)
T d1n7ha_           4 ALITGITGQDGSYLTEFLLG------KGYEVHGLIRRS   35 (339)
T ss_dssp             EEEETTTSHHHHHHHHHHHH------TTCEEEEEECCC
T ss_pred             EEEeCCccHHHHHHHHHHHH------CcCEEEEEECCC
Confidence            56666 58899999999999      899999999864

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=81.82  E-value=1.3  Score=22.97  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=23.9

Q ss_pred             cccEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          22 VADVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        22 ~~dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      ...|+|.|| |-+| +.|++|++.     .|.+|+.+-+++
T Consensus        32 ~~~vlI~gasGgVG-~~aiQlak~-----~G~~Vi~~t~s~   66 (77)
T d1o8ca2          32 DGEIVVTGASGGVG-STAVALLHK-----LGYQVVAVSGRE   66 (77)
T ss_dssp             GCEEEESSTTSHHH-HHHHHHHHH-----TTCCEEEEESCG
T ss_pred             CCcEEEEeCCCcHH-HHHHHHHHH-----cCCeEEEEECCH
Confidence            345888887 5566 455677664     789999887654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=81.81  E-value=0.45  Score=29.05  Aligned_cols=33  Identities=18%  Similarity=0.063  Sum_probs=26.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          21 DVADVVIVGGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        21 ~~~dv~IIGgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +...|+.||+|..-  .|..|++      +|.+|+-+|-++
T Consensus        20 ~~~rvLd~GCG~G~--~a~~la~------~G~~V~gvD~S~   52 (201)
T d1pjza_          20 PGARVLVPLCGKSQ--DMSWLSG------QGYHVVGAELSE   52 (201)
T ss_dssp             TTCEEEETTTCCSH--HHHHHHH------HCCEEEEEEECH
T ss_pred             CCCEEEEecCcCCH--HHHHHHH------cCCceEeecccH
Confidence            34579999999964  4557888      799999999774

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.44  E-value=0.98  Score=29.14  Aligned_cols=30  Identities=33%  Similarity=0.555  Sum_probs=23.5

Q ss_pred             EEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          26 VIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        26 ~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      +|-|| +-.|.++|..|++      +|.+|++.++..
T Consensus         5 lVTGas~GIG~aia~~la~------~G~~Vvi~~r~~   35 (266)
T d1mxha_           5 VITGGARRIGHSIAVRLHQ------QGFRVVVHYRHS   35 (266)
T ss_dssp             EETTCSSHHHHHHHHHHHH------TTCEEEEEESSC
T ss_pred             EEeCCCCHHHHHHHHHHHH------CCCEEEEEECCc
Confidence            34443 3368889999999      899999999875

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=81.21  E-value=1.9  Score=28.98  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=26.8

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecC
Q psy2240          23 ADVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKA   60 (182)
Q Consensus        23 ~dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~   60 (182)
                      ..|+|.|| |..|..++..|.+      +|.+|..+-|+
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~------~G~~V~~~vR~   44 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLE------HGYKVRGTARS   44 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH------TTCEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHH------CcCEEEEEeCC
Confidence            46999985 6699999999998      89999887664

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.98  E-value=1.3  Score=29.67  Aligned_cols=32  Identities=25%  Similarity=0.200  Sum_probs=27.3

Q ss_pred             cEEEEC-CChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIVG-GGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIG-gG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .++|.| .|..|..++.+|.+      .|.+|+.+++..
T Consensus        18 ~iLVTG~tGfIGs~lv~~L~~------~g~~V~~~d~~~   50 (341)
T d1sb8a_          18 VWLITGVAGFIGSNLLETLLK------LDQKVVGLDNFA   50 (341)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH------TTCEEEEEECCS
T ss_pred             EEEEecCCCHHHHHHHHHHHH------CcCEEEEEECCC
Confidence            478877 58899999999999      899999999743

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.86  E-value=1.1  Score=29.19  Aligned_cols=33  Identities=27%  Similarity=0.321  Sum_probs=23.9

Q ss_pred             cEEEE--CCChHHHHHHHHHHHhhhhcCCCceEEEEecCC
Q psy2240          24 DVVIV--GGGPAGMAAAIRLKQLAEKDGKELKVCLVEKAA   61 (182)
Q Consensus        24 dv~II--GgG~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~   61 (182)
                      .|+||  |++-.|..+|..|++.     .|.+|++..|+.
T Consensus         4 rVAlVTGas~GIG~a~A~~la~~-----~g~~Vi~~~r~~   38 (275)
T d1wmaa1           4 HVALVTGGNKGIGLAIVRDLCRL-----FSGDVVLTARDV   38 (275)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHH-----SSSEEEEEESSH
T ss_pred             eEEEECCCCCHHHHHHHHHHHHh-----CCCEEEEEECCH
Confidence            47777  3344577788888871     388999999875

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.73  E-value=1.7  Score=29.13  Aligned_cols=33  Identities=27%  Similarity=0.278  Sum_probs=27.4

Q ss_pred             cE-EEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DV-VIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv-~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .| +|.|| |..|..+...|.+      .|++|+.++|.+.
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~------~g~~V~~i~r~~~   36 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLE------KGYEVHGIVRRSS   36 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH------TTCEEEEEECCCS
T ss_pred             CEEEEecCCcHHHHHHHHHHHH------CcCEEEEEECCCc
Confidence            36 67775 6799999999998      8999999998653

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=80.59  E-value=1  Score=27.52  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=23.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          24 DVVIVGG-GPAGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        24 dv~IIGg-G~~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .|+|.|| |-.|. +|++|++.     .|.+|+.+-+.+.
T Consensus        34 ~vlV~gasGGVG~-~aiQlAk~-----~Ga~Via~~~~~~   67 (177)
T d1o89a2          34 EIVVTGASGGVGS-TAVALLHK-----LGYQVVAVSGRES   67 (177)
T ss_dssp             EEEESSTTSHHHH-HHHHHHHH-----TTCCEEEEESCGG
T ss_pred             cEEEEEccccchH-HHHHHHHH-----cCCCeEEEecchh
Confidence            4666664 66774 56888885     7999998877653

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.55  E-value=1.6  Score=26.46  Aligned_cols=34  Identities=18%  Similarity=0.160  Sum_probs=29.5

Q ss_pred             ccEEEECCCh-HHHHHHHHHHHhhhhcCCCceEEEEecCCC
Q psy2240          23 ADVVIVGGGP-AGMAAAIRLKQLAEKDGKELKVCLVEKAAE   62 (182)
Q Consensus        23 ~dv~IIGgG~-~Gl~~A~~l~~~~~~~~~g~~v~vlE~~~~   62 (182)
                      .+++|||-+. .|.-+|..|++      .|..|+++.+...
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~------~gatVt~~~~~t~   74 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLW------NNATVTTCHSKTA   74 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHH------TTCEEEEECTTCS
T ss_pred             ceEEEEecCCccchHHHHHHHh------ccCceEEEecccc
Confidence            5799999765 99999999999      8999999988753

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.43  E-value=0.91  Score=30.34  Aligned_cols=30  Identities=27%  Similarity=0.307  Sum_probs=22.6

Q ss_pred             cEEEECCChHHHHHHHHHHHhhhhcCCC-ceEEEEecCC
Q psy2240          24 DVVIVGGGPAGMAAAIRLKQLAEKDGKE-LKVCLVEKAA   61 (182)
Q Consensus        24 dv~IIGgG~~Gl~~A~~l~~~~~~~~~g-~~v~vlE~~~   61 (182)
                      -|+-||+|. |+ .++.+++      +| .+|+.+|.++
T Consensus        38 ~VLDiGcG~-G~-lsl~aa~------~Ga~~V~aid~s~   68 (311)
T d2fyta1          38 VVLDVGCGT-GI-LSMFAAK------AGAKKVLGVDQSE   68 (311)
T ss_dssp             EEEEETCTT-SH-HHHHHHH------TTCSEEEEEESST
T ss_pred             EEEEECCCC-CH-HHHHHHH------cCCCEEEEEeCHH
Confidence            489999996 54 3457777      66 4899999875