Psyllid ID: psy2245

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MGSGLVCTNPKHNLIRHKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAWKYSYY
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgsglvctnpkhnlirhkrrydalkdtkppndaEMTLQFLKSAIFYFltdpvnaqGHLTALLSILGYSDAQKENIMKTQAHAWKYSYY
Flexible Loop (DISEMBL)
mgsglvctnpkhnlirhkrrydalkdtkppnDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAWKYSYY
Low Complexity Region (SEG)
MGSGLVCTNPKHNLIRHKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAWKYSYY
Disordered region (IsUnstruct)
**********************************MTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAWKY***
Disordered Region (DISOPRED)
***G***TNPKHNLIRH****************EMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQK****************
Disordered Region (DISEMBL)
MGSGLVCTNPKHNLIRHKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAWKYSYY
Disordered Region (DISPRO)
**SGLVCTNPKHNLIRHKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAWK*SYY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSGLVCTNPKHNLIRHKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAWKYSYY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
328705798	439	PREDICTED: hypothetical protein LOC10057	0.613	0.123	0.660	3e-12
328705796	440	PREDICTED: hypothetical protein LOC10057	0.613	0.122	0.660	3e-12
328705802	465	PREDICTED: hypothetical protein LOC10057	0.613	0.116	0.660	4e-12
328705800	466	PREDICTED: hypothetical protein LOC10057	0.613	0.115	0.660	4e-12
312377728	726	hypothetical protein AND_10883 [Anophele	0.727	0.088	0.6	7e-12
170043862	514	quick-to-court [Culex quinquefasciatus]	0.727	0.124	0.615	9e-12
118785512	473	AGAP008614-PA [Anopheles gambiae str. PE	0.727	0.135	0.584	2e-11
357609615	555	hypothetical protein KGM_18468 [Danaus p	0.715	0.113	0.539	9e-11
157105342	439	hypothetical protein AaeL_AAEL014486 [Ae	0.727	0.145	0.569	2e-10
195386584	682	GJ24105 [Drosophila virilis] gi|19414844	0.579	0.074	0.622	1e-09

>gi|328705798|ref|XP_003242909.1| PREDICTED: hypothetical protein LOC100572731 isoform 2 [Acyrthosiphon pisum]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 2/56 (3%)

Query: 29  PPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAWK 84
           P +DAEMTLQFLKSA +Y+LTDP N  GHL A+LSIL YSDA+K+ I + Q  AWK
Sbjct: 386 PIHDAEMTLQFLKSAFYYYLTDPSNTTGHLNAILSILRYSDAEKKIIERNQ--AWK 439

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705796|ref|XP_003242908.1| PREDICTED: hypothetical protein LOC100572731 isoform 1 [Acyrthosiphon pisum]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 2/56 (3%)

Query: 29  PPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAWK 84
           P +DAEMTLQFLKSA +Y+LTDP N  GHL A+LSIL YSDA+K+ I + Q  AWK
Sbjct: 387 PIHDAEMTLQFLKSAFYYYLTDPSNTTGHLNAILSILRYSDAEKKIIERNQ--AWK 440

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705802|ref|XP_003242911.1| PREDICTED: hypothetical protein LOC100572731 isoform 4 [Acyrthosiphon pisum]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 2/56 (3%)

Query: 29  PPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAWK 84
           P +DAEMTLQFLKSA +Y+LTDP N  GHL A+LSIL YSDA+K+ I + Q  AWK
Sbjct: 412 PIHDAEMTLQFLKSAFYYYLTDPSNTTGHLNAILSILRYSDAEKKIIERNQ--AWK 465

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705800|ref|XP_003242910.1| PREDICTED: hypothetical protein LOC100572731 isoform 3 [Acyrthosiphon pisum]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 2/56 (3%)

Query: 29  PPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAWK 84
           P +DAEMTLQFLKSA +Y+LTDP N  GHL A+LSIL YSDA+K+ I + Q  AWK
Sbjct: 413 PIHDAEMTLQFLKSAFYYYLTDPSNTTGHLNAILSILRYSDAEKKIIERNQ--AWK 466

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377728|gb|EFR24487.1| hypothetical protein AND_10883 [Anopheles darlingi]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 50/65 (76%), Gaps = 1/65 (1%)

Query: 17  HKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIM 76
           +KR  DA + TK   D E+TLQFLKSAI+YFLTD  N+QGHL A+ SILG+SDA++ NI 
Sbjct: 662 YKRLIDA-QQTKNKVDPEVTLQFLKSAIYYFLTDKENSQGHLNAIESILGFSDAERSNID 720

Query: 77  KTQAH 81
           K +A+
Sbjct: 721 KARAY 725

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043862|ref|XP_001849588.1| quick-to-court [Culex quinquefasciatus] gi|167867151|gb|EDS30534.1| quick-to-court [Culex quinquefasciatus]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 50/65 (76%), Gaps = 1/65 (1%)

Query: 17  HKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIM 76
           +KR  DA + TK   D E+TLQFLKSAI+YFLTD  N+QGHL A+ SILG+SDA+K NI 
Sbjct: 450 YKRLIDA-QQTKNKVDPEVTLQFLKSAIYYFLTDKENSQGHLNAIESILGFSDAEKCNID 508

Query: 77  KTQAH 81
           K +A+
Sbjct: 509 KARAY 513

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118785512|ref|XP_314710.3| AGAP008614-PA [Anopheles gambiae str. PEST] gi|116127772|gb|EAA10063.3| AGAP008614-PA [Anopheles gambiae str. PEST]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 17  HKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIM 76
           +KR  DA + TK   D E+TLQFLKSAI+YFLTD  N+QGHL A+ SILG+SD ++ NI 
Sbjct: 409 YKRLIDA-QQTKNKVDPEVTLQFLKSAIYYFLTDKENSQGHLNAIESILGFSDVERSNID 467

Query: 77  KTQAH 81
           K +A+
Sbjct: 468 KARAY 472

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357609615|gb|EHJ66548.1| hypothetical protein KGM_18468 [Danaus plexippus]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 48/63 (76%)

Query: 17  HKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIM 76
           ++R  ++ K  K   D E+TLQFLKSAI+YFLTDP N QGHL A+ +ILG+++A+K+NI 
Sbjct: 491 YRRIVESQKGNKTIIDPEVTLQFLKSAIYYFLTDPENHQGHLNAIENILGFTEAEKKNIR 550

Query: 77  KTQ 79
           K +
Sbjct: 551 KAR 553

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105342|ref|XP_001648824.1| hypothetical protein AaeL_AAEL014486 [Aedes aegypti] gi|108869029|gb|EAT33254.1| AAEL014486-PA, partial [Aedes aegypti]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 48/65 (73%), Gaps = 1/65 (1%)

Query: 17  HKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIM 76
           +KR  DA +  K   D E+TLQFLKSAI+YFLTD  N+QGHL A+ SILG+S+ +K NI 
Sbjct: 375 YKRLIDA-QQVKNKVDPEVTLQFLKSAIYYFLTDKENSQGHLNAIESILGFSETEKSNID 433

Query: 77  KTQAH 81
           K +A+
Sbjct: 434 KARAY 438

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195386584|ref|XP_002051984.1| GJ24105 [Drosophila virilis] gi|194148441|gb|EDW64139.1| GJ24105 [Drosophila virilis]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 41/53 (77%), Gaps = 2/53 (3%)

Query: 32  DAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQAHAWK 84
           D E+TLQFLKSAIFYFLTD  N+QGHL A+ SIL ++D +K+ I  TQA + K
Sbjct: 632 DPEVTLQFLKSAIFYFLTDKENSQGHLQAIESILEFTDEEKQKI--TQARSTK 682

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
FB|FBgn0028572	721	qtc "quick-to-court" [Drosophi	0.659	0.080	0.559	4.2e-10
ZFIN|ZDB-GENE-040801-118	802	gcc1 "GRIP and coiled-coil dom	0.534	0.058	0.428	0.00037

FB|FBgn0028572 qtc "quick-to-court" [Drosophila melanogaster (taxid:7227)]

 Score = 155 (59.6 bits), Expect = 4.2e-10, P = 4.2e-10
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query:    17 HKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENI 75
             ++R  +A K+ +   D E+TLQFLKSAIFYFLTD  N+QGHL A+ SIL ++DA+K+ I
Sbjct:   656 YRRLLEAQKN-RTHVDPEVTLQFLKSAIFYFLTDKENSQGHLQAIESILEFTDAEKQKI 713

GO:0008049 "male courtship behavior" evidence=IMP

GO:0007619 "courtship behavior" evidence=TAS

GO:0000042 "protein targeting to Golgi" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

GO:0048047 "mating behavior, sex discrimination" evidence=IDA

ZFIN|ZDB-GENE-040801-118 gcc1 "GRIP and coiled-coil domain containing 1" [Danio rerio (taxid:7955)]

 Score = 100 (40.3 bits), Expect = 0.00037, P = 0.00037
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query:    37 LQFLKSAIFYFLT--DPVNAQGHLTALLSILGYSDAQKENIMKTQAHAW 83
             L++LK+ I+ FLT  D    Q  LTA+L+IL +S  +K+ ++K Q H+W
Sbjct:   748 LEYLKNVIYKFLTLQDTRGRQQTLTAILTILHFSPQEKQVVLKQQQHSW 796


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        88   0.00091  102 3  11 22  0.45    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  112 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.38u 0.09s 10.47t   Elapsed:  00:00:02
  Total cpu time:  10.38u 0.09s 10.47t   Elapsed:  00:00:02
  Start:  Thu Aug 15 15:38:08 2013   End:  Thu Aug 15 15:38:10 2013

GO:0000042 "protein targeting to Golgi" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PF01465	46	GRIP: GRIP domain; InterPro: IPR000237 The GRIP (g	99.53
smart00755	46	Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-	99.38
PF08349	117	DUF1722: Protein of unknown function (DUF1722); In	94.18
PRK10167	169	hypothetical protein; Provisional	84.98
PF12844	64	HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_	84.07
cd07321	77	Extradiol_Dioxygenase_3A_like Subunit A of Class I	82.7
PF09228	102	Prok-TraM: Prokaryotic Transcriptional repressor T	81.98

>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins

Probab=99.53  E-value=1.8e-14  Score=86.16  Aligned_cols=43  Identities=26%  Similarity=0.600  Sum_probs=34.7

Q ss_pred             hhHHHHHHHHHHHHhc--CccchhhhHHHHHHHhCCCHHHHHHHH
Q psy2245          34 EMTLQFLKSAIFYFLT--DPVNAQGHLTALLSILGYSDAQKENIM   76 (88)
Q Consensus        34 EanLefLKnaIy~fLT--D~~~~q~hLtAI~sIL~FSp~Ek~~V~   76 (88)
                      ++++|||||+|+.||+  |+..+++++.||.+||+|||+|++.|.
T Consensus         2 ~~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~~i~   46 (46)
T PF01465_consen    2 GINLEYLKNVLLQFLESREPSEREQLLPVIATLLKFSPEEKQKIL   46 (46)
T ss_dssp             -HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--HHHHHHHH
T ss_pred             chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHHhhC
Confidence            4799999999999999  445899999999999999999999874

It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.

>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245

Probab=99.38  E-value=8.1e-13  Score=80.00  Aligned_cols=44  Identities=20%  Similarity=0.401  Sum_probs=39.0

Q ss_pred             hhHHHHHHHHHHHHhcCccc-hhhhHHHHHHHhCCCHHHHHHHHh
Q psy2245          34 EMTLQFLKSAIFYFLTDPVN-AQGHLTALLSILGYSDAQKENIMK   77 (88)
Q Consensus        34 EanLefLKnaIy~fLTD~~~-~q~hLtAI~sIL~FSp~Ek~~V~k   77 (88)
                      ++|+|||||+++.||+-++. +++.+.||.++|+|||+|.+.++.
T Consensus         1 ~~n~eYLKNVll~fl~~~e~~r~~ll~vi~tlL~fs~~e~~~~~~   45 (46)
T smart00755        1 EANFEYLKNVLLQFLTLRESERETLLKVISTVLQLSPEEMQKLLE   45 (46)
T ss_pred             CccHHHHHHHHHHHhccCcchHHHHHHHHHHHhCCCHHHHHHHHh
Confidence            36899999999999994444 899999999999999999998864

>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli

Probab=94.18  E-value=0.42  Score=32.07  Aligned_cols=63  Identities=19%  Similarity=0.313  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCC-----CHHHHHHHHhh
Q psy2245          16 RHKRRYDALKDTKPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGY-----SDAQKENIMKT   78 (88)
Q Consensus        16 ~~~~r~~~~~~~k~~~D~EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~F-----Sp~Ek~~V~k~   78 (88)
                      .+|+-+.+.-.+....+.+..++-....+..-|.-+..+..|.+|++-|.|+     |++||+.....
T Consensus        10 ~~y~~lg~~va~~~~~~~~~~~~~Y~~~l~~al~~~~~~~~~~Nvl~Hi~Gyfk~~ls~~EK~~~~~~   77 (117)
T PF08349_consen   10 KIYRELGRLVANAGKRPLEEVFEEYEELLMEALSKPPTRGSHINVLQHIFGYFKKKLSSEEKQHFLDL   77 (117)
T ss_pred             HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4677777777777777788777777888888888888899999999999986     89999877654

>PRK10167 hypothetical protein; Provisional

Probab=84.98  E-value=7.1  Score=28.80  Aligned_cols=59  Identities=14%  Similarity=0.337  Sum_probs=45.1

Q ss_pred             HHHHHHHHHhCCCCC-ChhhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCC-----CHHHHHHH
Q psy2245          17 HKRRYDALKDTKPPN-DAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGY-----SDAQKENI   75 (88)
Q Consensus        17 ~~~r~~~~~~~k~~~-D~EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~F-----Sp~Ek~~V   75 (88)
                      +||.+...-.+.... +.+.-++=-...+..-|.-+..+..|.|+++-|.||     |++||+..
T Consensus        51 ~yr~LG~lva~~~~~~~~~~~~~~Y~~~lm~al~~~~t~~~~~NvL~Hi~GYFKk~Ls~~EKq~l  115 (169)
T PRK10167         51 EYRKLGPFVADIHQWQSLDDFYNQYRQRVIVLLSHPANVRDHTNVLMHVQGYFRPHIDSTERQQL  115 (169)
T ss_pred             HHHHHHHHHhcCCcCCCHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHhhCCHHHHHHH
Confidence            466666665665554 677666555677788888888899999999999997     99998876

>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B

Probab=84.07  E-value=2.9  Score=24.09  Aligned_cols=53  Identities=19%  Similarity=0.231  Sum_probs=35.0

Q ss_pred             HHHHHHHhCCCCCChhh--HHHHHHHHHHHHhc-CccchhhhHHHHHHHhCCCHHH
Q psy2245          19 RRYDALKDTKPPNDAEM--TLQFLKSAIFYFLT-DPVNAQGHLTALLSILGYSDAQ   71 (88)
Q Consensus        19 ~r~~~~~~~k~~~D~Ea--nLefLKnaIy~fLT-D~~~~q~hLtAI~sIL~FSp~E   71 (88)
                      .|+.+++.+++....+.  .+..=++.|+.+.. ...-+-.+|.+|..+|+.|+++
T Consensus         2 ~~lk~~r~~~~lt~~~~a~~~~i~~~~i~~~e~g~~~~~~~~l~~i~~~~~v~~~~   57 (64)
T PF12844_consen    2 ERLKELREEKGLTQKDLAEKLGISRSTISKIENGKRKPSVSTLKKIAEALGVSLDE   57 (64)
T ss_dssp             HHHHHHHHHCT--HHHHHHHHTS-HHHHHHHHTTSS--BHHHHHHHHHHHTS-HHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCcCCCHHHHHHHHHHhCCCHHH
Confidence            46777777776654442  23333888999998 4455679999999999999986

>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases

Probab=82.70  E-value=2.8  Score=26.99  Aligned_cols=38  Identities=16%  Similarity=0.255  Sum_probs=28.9

Q ss_pred             HHHHHHHhcCccchhhhH---HHHHHHhCCCHHHHHHHHhh
Q psy2245          41 KSAIFYFLTDPVNAQGHL---TALLSILGYSDAQKENIMKT   78 (88)
Q Consensus        41 KnaIy~fLTD~~~~q~hL---tAI~sIL~FSp~Ek~~V~k~   78 (88)
                      .+.|...+.||++++.-+   .|.+.=-++|||||++|+.-
T Consensus         6 ~~~~~~~~~~~~~re~f~~dp~a~~~~~~Lt~eE~~al~~r   46 (77)
T cd07321           6 EKLLEQLLVKPEVKERFKADPEAVLAEYGLTPEEKAALLAR   46 (77)
T ss_pred             HHHHHHHhcCHHHHHHHHhCHHHHHHHcCCCHHHHHHHHcC
Confidence            667777777887766554   46777789999999999753

Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c

>PF09228 Prok-TraM: Prokaryotic Transcriptional repressor TraM; InterPro: IPR015309 Members of this family of transcriptional repressors adopt a T-shaped structure, with a core composed of two antiparallel alpha-helices

Probab=81.98  E-value=1.3  Score=31.11  Aligned_cols=53  Identities=28%  Similarity=0.490  Sum_probs=37.4

Q ss_pred             hHHHHHHHHHHHHh----C----------CCCCChhhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHH
Q psy2245          13 NLIRHKRRYDALKD----T----------KPPNDAEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDA   70 (88)
Q Consensus        13 ~~~~~~~r~~~~~~----~----------k~~~D~EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~   70 (88)
                      +-||-+||+.++-+    +          .+....+..++|+.-.+     -.++.|.-|+.|++||||.|+
T Consensus        35 ~AIRehR~lv~~ae~~~eew~~~~~d~~~~~~~~~~~~~eY~~~~~-----e~hAQ~~~lstli~~LGyvPk  101 (102)
T PF09228_consen   35 SAIREHRRLVEAAERLFEEWIRLPEDPKISPAVLGELQLEYIERQI-----EMHAQQSALSTLIDILGYVPK  101 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHSCHHHHTTSCHHSHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTSEE-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCccCcccchHHHHHHHHHHH-----HhHHHHHHHHHHHHHhCCCCC
Confidence            46899999987644    1          12233347788887654     346678889999999999985

These proteins can be divided into two parts, a globular head and an elongated tail, and they negatively regulate conjugation and the expression of tra genes by antagonising traR/AAI-dependent activation []. ; GO: 0045892 negative regulation of transcription, DNA-dependent; PDB: 2Q0O_D 2HJD_D 1UPG_A 1US6_B 1RFY_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
1upt_B	60	Golgi autoantigen, golgin subfamily A member 4; hy	99.38
2q0o_C	107	Probable transcriptional repressor TRAM; helix-tur	90.11
1rfy_A	102	TRAM protein;, transcriptional repressor TRAM; int	89.26
2hjd_A	102	Quorum-sensing antiactivator; helix coiled coil, s	88.15

>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*

Probab=99.38  E-value=6.9e-13  Score=84.59  Aligned_cols=45  Identities=13%  Similarity=0.457  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHHHHHHhhhh
Q psy2245          35 MTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKTQA   80 (88)
Q Consensus        35 anLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~k~~~   80 (88)
                      +++|||||++|.||+-+ ++.++++||.+||+|||+|.+.|++.-.
T Consensus         5 an~EYLrNVl~~ym~g~-~~~~m~kaI~avL~Fs~~e~q~il~~e~   49 (60)
T 1upt_B            5 TEFEYLRKVLFEYMMGR-ETKTMAKVITTVLKFPDDQTQKILERED   49 (60)
T ss_dssp             HHHHHHHHHHHHHHTTS-SHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            79999999999999966 4688999999999999999999976543

>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}

Probab=90.11  E-value=0.18  Score=35.01  Aligned_cols=58  Identities=22%  Similarity=0.271  Sum_probs=36.8

Q ss_pred             hHHHHHHHHHHHHh------CCCCCChh---hHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHH
Q psy2245          13 NLIRHKRRYDALKD------TKPPNDAE---MTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDA   70 (88)
Q Consensus        13 ~~~~~~~r~~~~~~------~k~~~D~E---anLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~   70 (88)
                      +-||-+||++++-+      -+...||+   +.|+=|-..--.=..-.++.|.-|+.|+.||||.|.
T Consensus        34 ~AIReHRrLv~~ae~~~qe~~~a~~d~~~~~avl~~~q~eYi~a~~e~~AQq~~lstLid~LGyvPk  100 (107)
T 2q0o_C           34 SAIREHRRLLWADQAVYEEWLRASDDPSISGPVLQTLQDEYVARQKRSEAQQEELSDILDALGFVPD  100 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            46999999987654      12345553   233222222112223667888999999999999984

>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A

Probab=89.26  E-value=0.22  Score=34.25  Aligned_cols=53  Identities=23%  Similarity=0.410  Sum_probs=38.3

Q ss_pred             hHHHHHHHHHHHHh------CCC-CCCh----hhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHH
Q psy2245          13 NLIRHKRRYDALKD------TKP-PNDA----EMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDA   70 (88)
Q Consensus        13 ~~~~~~~r~~~~~~------~k~-~~D~----EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~   70 (88)
                      +-||-+||+.++-+      -++ ..||    ..-++|+...+     -.++.|.-|+.|+.||||.|.
T Consensus        35 ~AIr~HRrLl~~ae~~fq~w~~~~~~dps~~~~lh~eYi~~~i-----e~~AQq~~lstli~~LGyvP~   98 (102)
T 1rfy_A           35 DAIRTHRRLVEKADELFQALPETYKTGQACGGPQHIRYIEASI-----EMHAQMSALNTLISILGFIPK   98 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCHHHHTTSSCCSHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCcccCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCC
Confidence            56899999987644      111 2333    36788886654     457788899999999999984

>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}

Probab=88.15  E-value=0.22  Score=34.27  Aligned_cols=53  Identities=21%  Similarity=0.342  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHHh------CCC-CCC----hhhHHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHH
Q psy2245          13 NLIRHKRRYDALKD------TKP-PND----AEMTLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDA   70 (88)
Q Consensus        13 ~~~~~~~r~~~~~~------~k~-~~D----~EanLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~   70 (88)
                      +-||-+||+.++-+      -++ ..|    ...-++|+...+     -.++.|.-|+.|+.||||.|.
T Consensus        35 ~AIr~HRrLl~~ae~~fq~w~~~~~~dps~~~~lh~eYi~~~i-----e~~AQq~~lstli~~LGyvP~   98 (102)
T 2hjd_A           35 NAIRLHRQLLEKADQLFQVLPDDIKIGTAAGGEQHLEYIEAMI-----EMHAQMSAVNTLVGLLGFIPK   98 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCHHHHHTSCCCSHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCcccCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCC
Confidence            56899999987644      111 223    336788887654     457788899999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1uptb_	58	Golgi autoantigen, golgin-245 {Human (Homo sapiens	98.0

>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GRIP domain
superfamily: GRIP domain
family: GRIP domain
domain: Golgi autoantigen, golgin-245
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=5.3e-06  Score=51.29  Aligned_cols=48  Identities=15%  Similarity=0.488  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHhcCccchhhhHHHHHHHhCCCHHHHHHHHhh---hhhccc
Q psy2245          36 TLQFLKSAIFYFLTDPVNAQGHLTALLSILGYSDAQKENIMKT---QAHAWK   84 (88)
Q Consensus        36 nLefLKnaIy~fLTD~~~~q~hLtAI~sIL~FSp~Ek~~V~k~---~~~~Ww   84 (88)
                      -.|||||++|.||+-+++ ...-+-|.+++.|+++|-+.|..-   +.++|-
T Consensus         4 E~EYLRnvLfeYMmG~E~-~tlaKVi~av~kF~~~Q~q~iL~kE~~r~~swl   54 (58)
T d1uptb_           4 EFEYLRKVLFEYMMGRET-KTMAKVITTVLKFPDDQTQKILEREDARLMSWL   54 (58)
T ss_dssp             HHHHHHHHHHHHHTTSSH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcch-hHHHHHHHHHHhCCHHHHHHHHHHHhcchhhHH
Confidence            369999999999998874 667788999999999999998643   236674