Psyllid ID: psy2323

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
MSAKKHYSTTTSSMELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREAYEILKVMPKMDTTYL
ccccccccccccccccccHHHHHHccccccEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEEcccccccccccccEEEEcccccHHHHHHHHcccEEEEccccccHHHHHHcccccccEEEEEEEcccccccEEEcccccHHHHHHHHcccEEEEEccccccccccccccccHHHHHccccHHHHHHcccHHEEcccccccccccccEEEccccEEEEEcccccccccccccEEcccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHcHHccccccEEEccccHHHHHHHHcccccccccccccccEEEEcccccHHHHHHccccccEEEEEccccccHHHHHHccccEEEcHHHHHHccccccccccccccccccccHHHHHHcccccccccccEEEEEcccccccccccEEEEcccccccccccccccEEEccccEEEcccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccc
ccHHHHHccHHHccccccHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEEcccccccccHHHccEEcccccccHHHHHHHHcccccEccHHHHHHHHHHHcccccccEEEEEEccccccccEEcccccccHHHHHHHHcHEEEEEcccccHHHHcccccccHHHHccccccEcccccccccccccEEcccccccccEEEcccccEEEEccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccHHHHcccHHHHHHccEEEccccccccccEEEEccccccEHHHHHccccEEEEEccEccccHHHHHHcccEEEEEcEEEEEEcccEccccccccEEcccccccHHHHccHEcccccccEEEEEccccccccEcEEEEEcccccccEccHcccEEEEEcccHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccc
msakkhystttSSMELISKEQAvqfikpnsLVFVEGVVGTPKVLMNAMYDhvkskniqgvtvldvfslypydnmtpeddcvrrlsffvspytrkyvntgaaeyipimlndlpmvfdrgyfspdvalisvsppdasgfvslGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVsyelfspgkggwllfspgkgswllfspateeVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQInlgvhtelltpgVIKLFNsgvinnskksidrGQITATlllgdkplydfvhnnelvqmkrgtysndpaiirqnhrMTAINTCleiditgqvvsdslgtriysgfggqvdfmrgaltgldgkgkailalpstdvstglskivptikpgagvvcsrAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREAYEILKVmpkmdttyl
msakkhystttssmeliSKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHvkskniqgvTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILAlpstdvstglSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIriahpqhreaLEREAYEILkvmpkmdttyl
MSAKKHYSTTTSSMELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREAYEILKVMPKMDTTYL
********************QAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREAYEILKV*********
*SA*KHYSTTTSSMELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWL*********TEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREAYEILKVMP*******
*************MELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREAYEILKVMPKMDTTYL
MSAKKHYSTTTSSMELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREAYEILKVMPK******
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ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSAKKHYSTTTSSMELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMTPEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREAYEILKVMPKMDTTYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query509 2.2.26 [Sep-21-2011]
P38942429 4-hydroxybutyrate coenzym yes N/A 0.805 0.955 0.378 2e-78
Q6BKW1523 Acetyl-CoA hydrolase OS=D yes N/A 0.844 0.822 0.258 8e-20
P83773524 Acetyl-CoA hydrolase OS=C N/A N/A 0.840 0.816 0.259 6e-19
Q6FPF3526 Acetyl-CoA hydrolase OS=C yes N/A 0.799 0.773 0.254 1e-18
P32316526 Acetyl-CoA hydrolase OS=S yes N/A 0.793 0.768 0.254 4e-18
Q754Q2523 Acetyl-CoA hydrolase OS=A yes N/A 0.803 0.782 0.248 1e-17
Q9UUJ9521 Acetyl-CoA hydrolase OS=S yes N/A 0.803 0.785 0.241 4e-17
P15937525 Acetyl-CoA hydrolase OS=N N/A N/A 0.856 0.830 0.250 7e-15
P52043492 Propionyl-CoA:succinate C N/A N/A 0.836 0.865 0.244 3e-14
Q6C3Z9524 Acetyl-CoA hydrolase OS=Y yes N/A 0.840 0.816 0.238 5e-14
>sp|P38942|CAT2_CLOK5 4-hydroxybutyrate coenzyme A transferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=cat2 PE=3 SV=3 Back     alignment and function desciption
 Score =  293 bits (751), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 183/484 (37%), Positives = 264/484 (54%), Gaps = 74/484 (15%)

Query: 15  ELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSK-NIQGVTVLDVFSL----Y 69
           +L++ E+AV  I+ +S V     VG P  L+NA+   VK+K N  G+ ++ + ++    Y
Sbjct: 10  KLVTAEKAVSKIENHSRVVFAHAVGEPVDLVNAL---VKNKDNYIGLEIVHMVAMGKGEY 66

Query: 70  PYDNMTPEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISV 129
             + M       R  + FV   TR  VN+G A+Y P    ++P +F       DVALI V
Sbjct: 67  TKEGMQRH---FRHNALFVGGCTRDAVNSGRADYTPCFFYEVPSLFKEKRLPVDVALIQV 123

Query: 130 SPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLI 189
           S PD  G+ S G +          +K VIA++N  MP                       
Sbjct: 124 SEPDKYGYCSFGVSNDYTKPAAESAKLVIAEVNKNMP----------------------- 160

Query: 190 RYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLL 249
                            R+LG + +HVS+IDY VE S+ L        L   P K     
Sbjct: 161 -----------------RTLGDSFIHVSDIDYIVEASHPL--------LELQPPK----- 190

Query: 250 FSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTP 309
                  + +++ AI  + C  L+ED ATLQ+G+G IP+A+L  +K++ NLG+H+E+++ 
Sbjct: 191 -------LGDVEKAIGEN-CASLIEDGATLQLGIGAIPDAVLLFLKNKKNLGIHSEMISD 242

Query: 310 GVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQ 369
           GV++L  +GVINN KK++  G+I  T L+G K LYDFV+NN +V+     Y N+P +I +
Sbjct: 243 GVMELVKAGVINNKKKTLHPGKIVVTFLMGTKKLYDFVNNNPMVETYSVDYVNNPLVIMK 302

Query: 370 NHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTD 429
           N  M +IN+C+++D+ GQV S+S+G +  SG GGQVDF+RGA   L   GKAI+A+PST 
Sbjct: 303 NDNMVSINSCVQVDLMGQVCSESIGLKQISGVGGQVDFIRGA--NLSKGGKAIIAIPSTA 360

Query: 430 VSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREA 489
               +S+I P +  GA V  SR  V YVVTEYG A L  K+ R RA ALI IAHP+ RE+
Sbjct: 361 GKGKVSRITPLLDTGAAVTTSRNEVDYVVTEYGVAHLKGKTLRNRARALINIAHPKFRES 420

Query: 490 LERE 493
           L  E
Sbjct: 421 LMNE 424

Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) (taxid: 431943)
EC: 2EC: .EC: 8EC: .EC: 3EC: .EC: -
>sp|Q6BKW1|ACH1_DEBHA Acetyl-CoA hydrolase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ACH1 PE=3 SV=1 Back     alignment and function description
>sp|P83773|ACH1_CANAL Acetyl-CoA hydrolase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ACH1 PE=1 SV=2 Back     alignment and function description
>sp|Q6FPF3|ACH1_CANGA Acetyl-CoA hydrolase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ACH1 PE=3 SV=1 Back     alignment and function description
>sp|P32316|ACH1_YEAST Acetyl-CoA hydrolase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ACH1 PE=1 SV=2 Back     alignment and function description
>sp|Q754Q2|ACH1_ASHGO Acetyl-CoA hydrolase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ACH1 PE=3 SV=3 Back     alignment and function description
>sp|Q9UUJ9|ACH1_SCHPO Acetyl-CoA hydrolase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ach1 PE=2 SV=1 Back     alignment and function description
>sp|P15937|ACH1_NEUCR Acetyl-CoA hydrolase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=acu-8 PE=3 SV=2 Back     alignment and function description
>sp|P52043|SCPC_ECOLI Propionyl-CoA:succinate CoA transferase OS=Escherichia coli (strain K12) GN=scpC PE=1 SV=1 Back     alignment and function description
>sp|Q6C3Z9|ACH1_YARLI Acetyl-CoA hydrolase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ACH1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query509
195399618477 GJ14323 [Drosophila virilis] gi|19414197 0.842 0.899 0.421 1e-107
193618077480 PREDICTED: 4-hydroxybutyrate coenzyme A 0.836 0.887 0.436 1e-107
194905813477 GG11976 [Drosophila erecta] gi|190655900 0.836 0.893 0.422 1e-106
194746106480 GF16210 [Drosophila ananassae] gi|190628 0.836 0.887 0.422 1e-105
195505025477 GE23426 [Drosophila yakuba] gi|194185432 0.836 0.893 0.418 1e-105
242018907414 4-hydroxybutyrate coenzyme A transferase 0.805 0.990 0.448 1e-105
118784349478 AGAP004396-PA [Anopheles gambiae str. PE 0.833 0.887 0.419 1e-104
195451691476 GK13373 [Drosophila willistoni] gi|19416 0.836 0.894 0.413 1e-104
21358615477 CG7920, isoform A [Drosophila melanogast 0.836 0.893 0.418 1e-103
157138048479 4-Hydroxybutyrate CoA-transferase, putat 0.833 0.885 0.423 1e-103
>gi|195399618|ref|XP_002058416.1| GJ14323 [Drosophila virilis] gi|194141976|gb|EDW58384.1| GJ14323 [Drosophila virilis] Back     alignment and taxonomy information
 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/491 (42%), Positives = 293/491 (59%), Gaps = 62/491 (12%)

Query: 16  LISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPYDNMT 75
           ++S E+AV  IK    VF +G   TP  L+N M  + K   ++ +TV  + +  P +   
Sbjct: 48  IVSPEEAVACIKSGDTVFAQGAAATPVTLLNTMTQYGKCNRLKDITVCHMHTEGPAEYCK 107

Query: 76  PE-DDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDA 134
           PE +D  R  SFF+    RK V  G A+ +PI L+++P +F +    PDVALI VSPPD 
Sbjct: 108 PEYEDIFRSNSFFMGANVRKAVAEGRADNVPIFLHEIPQLFYKKIVQPDVALIHVSPPDN 167

Query: 135 SGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSDLIRYVCQ 194
            G+ SLGT+V  + + +  SK+++AQIN  M                             
Sbjct: 168 HGYCSLGTSVDCVRAALVNSKKIVAQINPNM----------------------------- 198

Query: 195 VYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSWLLFSPAT 254
                      PR+ G +++H S  D+ +EV+ +L   G G                   
Sbjct: 199 -----------PRTFGDSIIHKSHFDFAIEVNDKLPQHGTG------------------- 228

Query: 255 EEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIKL 314
            E++ ++  I   I + L++D ATLQ+G+G IP+A+L+ + +  +LG+H+E+   GV+ L
Sbjct: 229 -EISAVEKKIGQLIAENLVQDGATLQMGIGSIPDAVLAALHNHKDLGIHSEMFANGVVDL 287

Query: 315 FNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMT 374
              G + NSKK + +G+I  + L+GD+PLYDFV+NN  ++M    Y N+  I++Q  RMT
Sbjct: 288 VKKGCVTNSKKKMHQGRIVGSFLIGDQPLYDFVNNNPFIEMLAIDYVNNTGIVKQQPRMT 347

Query: 375 AINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTGL 434
           AIN+C+E+D+TGQV SDS+GTR YSGFGGQVDF+RGA  G DG G  I+A+PST  S G 
Sbjct: 348 AINSCIEVDVTGQVCSDSIGTRFYSGFGGQVDFIRGAAEGTDGLGVPIIAMPST-TSKGG 406

Query: 435 SKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALEREA 494
           SKIVPT++PGAGVV SRAHV YVVTE+G A LF K+ RQR++ LI+IA P+HREALE+  
Sbjct: 407 SKIVPTLQPGAGVVTSRAHVHYVVTEHGIASLFGKNVRQRSYELIQIADPKHREALEKAV 466

Query: 495 YEILKVMPKMD 505
           YE LKVMP  D
Sbjct: 467 YERLKVMPSCD 477

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|193618077|ref|XP_001943025.1| PREDICTED: 4-hydroxybutyrate coenzyme A transferase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|194905813|ref|XP_001981262.1| GG11976 [Drosophila erecta] gi|190655900|gb|EDV53132.1| GG11976 [Drosophila erecta] Back     alignment and taxonomy information
>gi|194746106|ref|XP_001955525.1| GF16210 [Drosophila ananassae] gi|190628562|gb|EDV44086.1| GF16210 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195505025|ref|XP_002099331.1| GE23426 [Drosophila yakuba] gi|194185432|gb|EDW99043.1| GE23426 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|242018907|ref|XP_002429910.1| 4-hydroxybutyrate coenzyme A transferase, putative [Pediculus humanus corporis] gi|212514956|gb|EEB17172.1| 4-hydroxybutyrate coenzyme A transferase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|118784349|ref|XP_313680.3| AGAP004396-PA [Anopheles gambiae str. PEST] gi|116128463|gb|EAA09276.3| AGAP004396-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|195451691|ref|XP_002073035.1| GK13373 [Drosophila willistoni] gi|194169120|gb|EDW84021.1| GK13373 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|21358615|ref|NP_651762.1| CG7920, isoform A [Drosophila melanogaster] gi|442621803|ref|NP_001263095.1| CG7920, isoform C [Drosophila melanogaster] gi|7301882|gb|AAF56990.1| CG7920, isoform A [Drosophila melanogaster] gi|17861912|gb|AAL39433.1| GM14349p [Drosophila melanogaster] gi|220956342|gb|ACL90714.1| CG7920-PA [synthetic construct] gi|440218050|gb|AGB96474.1| CG7920, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|157138048|ref|XP_001657212.1| 4-Hydroxybutyrate CoA-transferase, putative [Aedes aegypti] gi|108880696|gb|EAT44921.1| AAEL003746-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query509
FB|FBgn0039737477 CG7920 [Drosophila melanogaste 0.487 0.519 0.538 8.4e-102
WB|WBGene00016630471 C44B7.10 [Caenorhabditis elega 0.479 0.518 0.510 1.5e-89
TIGR_CMR|CHY_1324434 CHY_1324 "4-hydroxybutyrate co 0.471 0.552 0.485 4.6e-86
WB|WBGene00014258472 ZK1320.9 [Caenorhabditis elega 0.485 0.523 0.475 4e-83
TIGR_CMR|CHY_1351432 CHY_1351 "4-hydroxybutyrate co 0.473 0.557 0.459 1.2e-77
TIGR_CMR|SO_1708428 SO_1708 "4-hydroxybutyrate coe 0.461 0.549 0.487 1.5e-77
UNIPROTKB|Q484X1 622 CPS_1656 "4-hydroxybutyrate co 0.463 0.379 0.475 1.8e-72
TIGR_CMR|CPS_1656 622 CPS_1656 "4-hydroxybutyrate co 0.463 0.379 0.475 1.8e-72
UNIPROTKB|Q0BZS7417 HNE_2321 "Putative 4-hydroxybu 0.436 0.532 0.317 2.1e-22
CGD|CAL0002388524 ACH1 [Candida albicans (taxid: 0.445 0.433 0.325 9.5e-20
FB|FBgn0039737 CG7920 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 714 (256.4 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
 Identities = 134/249 (53%), Positives = 186/249 (74%)

Query:   254 TEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTPGVIK 313
             T +++E++  I   I + L++D ATLQ+G+G IP+A+L+ + +  +LG+H+E+   GV++
Sbjct:   227 TGKISEVEKKIGKLIAENLVKDGATLQMGIGSIPDAVLAALHNHKDLGIHSEMFANGVVE 286

Query:   314 LFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRM 373
             L   G + NSKK + +G+I  + L+GDK LYDFV NN  ++M    Y N+ +I++Q  RM
Sbjct:   287 LVRKGCVTNSKKKMHQGRIVGSFLIGDKALYDFVDNNPFIEMYAIDYVNNTSIVKQQPRM 346

Query:   374 TAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG 433
             TAIN+C+E+D+TGQV SDS+G R YSGFGGQVDF+RGA  GLDG G  I+A+PST  + G
Sbjct:   347 TAINSCIEVDLTGQVCSDSIGPRFYSGFGGQVDFIRGAAEGLDGLGVPIIAMPST-TNKG 405

Query:   434 LSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIRIAHPQHREALERE 493
              SKIVPT+K GAGVV SRAHV YVVTE+G A LF K+ RQR + LI+IA P+HRE LE++
Sbjct:   406 ESKIVPTLKEGAGVVTSRAHVHYVVTEHGIASLFGKNVRQRMYELIQIADPKHRETLEKQ 465

Query:   494 AYEILKVMP 502
             A+E +KVMP
Sbjct:   466 AFERIKVMP 474
GO:0008411 "4-hydroxybutyrate CoA-transferase activity" evidence=ISS
GO:0006084 "acetyl-CoA metabolic process" evidence=IEA
GO:0005811 "lipid particle" evidence=IDA
GO:0022008 "neurogenesis" evidence=IMP
WB|WBGene00016630 C44B7.10 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1324 CHY_1324 "4-hydroxybutyrate coenzyme A transferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
WB|WBGene00014258 ZK1320.9 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1351 CHY_1351 "4-hydroxybutyrate coenzyme A transferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1708 SO_1708 "4-hydroxybutyrate coenzyme A transferase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q484X1 CPS_1656 "4-hydroxybutyrate coenzyme A transferase, putative/acetyltransferase, GNAT family" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_1656 CPS_1656 "4-hydroxybutyrate coenzyme A transferase, putative/acetyltransferase, GNAT family" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q0BZS7 HNE_2321 "Putative 4-hydroxybutyrate coenzyme A transferase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
CGD|CAL0002388 ACH1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6C3Z9ACH1_YARLI3, ., 1, ., 2, ., 10.23810.84080.8167yesN/A
P38942CAT2_CLOK52, ., 8, ., 3, ., -0.37800.80550.9557yesN/A
Q6BKW1ACH1_DEBHA3, ., 1, ., 2, ., 10.25830.84470.8221yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.2.1LOW CONFIDENCE prediction!
3rd Layer3.1.2LOW CONFIDENCE prediction!
3rd Layer2.8.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query509
COG0427501 COG0427, ACH1, Acetyl-CoA hydrolase [Energy produc 5e-90
pfam13336152 pfam13336, AcetylCoA_hyd_C, Acetyl-CoA hydrolase/t 1e-79
TIGR03948445 TIGR03948, butyr_acet_CoA, butyryl-CoA:acetate CoA 6e-70
TIGR03458485 TIGR03458, YgfH_subfam, succinate CoA transferase 4e-31
pfam02550198 pfam02550, AcetylCoA_hydro, Acetyl-CoA hydrolase/t 1e-21
>gnl|CDD|223504 COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion] Back     alignment and domain information 
 Score =  283 bits (727), Expect = 5e-90
 Identities = 142/496 (28%), Positives = 224/496 (45%), Gaps = 63/496 (12%)

Query: 16  LISKEQAVQFIKPNSLVFV-EGVVGTPKVLMNAMYDHVKSKNIQG----VTVLDVFSLYP 70
           LI+ E+A   IK    + +     G PK L  A+    ++ + +     V +    S+  
Sbjct: 16  LITPEEAASLIKDGDHLGMSFTGAGEPKALPEALARRAEANHGELKDLRVLLFTGASIGA 75

Query: 71  --YDNMTPEDDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGYF-SPDVALI 127
                +    + +RR  + V    RK +N G  +++   L+++P +  +G+    D+ALI
Sbjct: 76  DEDLKLAEAGEVIRRAPYQVYSPVRKAINEGGVDFVDQHLSEVPQLLRKGFLGDIDIALI 135

Query: 128 SVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEIDYKEKLSD 187
             S  D  G++  GT+V    S   G+++VI ++N  MP     AL  + +I     +  
Sbjct: 136 EASAIDEHGYIIPGTSVGNSKSWAEGAEKVIVEVNKYMP-----ALEGLHDIVRVPGMRV 190

Query: 188 LIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLLFSPGKGSW 247
            I        I    I          +   +ID  VE + E  +P               
Sbjct: 191 PIPIHRPGDRIGAPYIP---------IDPEKIDAIVE-TDEPDAP--------------- 225

Query: 248 LLFSPATEEVTEIDSAIANHIC------DELLEDEATLQIGLGKIPEAILSNIKHQI--N 299
           LL  P       I   +             L+ D   LQ G+G IP A++  +K     +
Sbjct: 226 LLERPPDPTTQAIAIHL-LGFLASEVAHGRLIPDGLPLQSGIGNIPNAVMGGLKESPFKD 284

Query: 300 LGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGT 359
           LGVHTE+L  G++ L   G + N+ K+        +  +G + LYD+++ N  + ++   
Sbjct: 285 LGVHTEVLQDGLVDLIEEGKVTNASKT----SFVLSFAMGSRKLYDYLNYNPRIVLRPQD 340

Query: 360 YSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGK 418
           YSN+P IIR+   + AIN+ LE+D+ G V S  + G+R  +G GG  DF+R A       
Sbjct: 341 YSNNPEIIRRLG-VIAINSALEVDLYGAVNSTHVGGSRQMNGIGGSGDFVRNAYL----- 394

Query: 419 GKAILALPSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHAL 478
             +I A PST     +S+IVP +   + V  +R  V  VVTEYG ADL   S R+RA A+
Sbjct: 395 --SIFATPSTAKGGTISRIVPML---SHVDHTRHDVDVVVTEYGIADLRGLSPRERAAAI 449

Query: 479 IRIAHPQHREALEREA 494
           I  AHP +R  LE  A
Sbjct: 450 IECAHPDYRPWLEEYA 465

Length = 501
>gnl|CDD|205516 pfam13336, AcetylCoA_hyd_C, Acetyl-CoA hydrolase/transferase C-terminal domain Back     alignment and domain information
>gnl|CDD|188463 TIGR03948, butyr_acet_CoA, butyryl-CoA:acetate CoA-transferase Back     alignment and domain information
>gnl|CDD|234217 TIGR03458, YgfH_subfam, succinate CoA transferase Back     alignment and domain information
>gnl|CDD|217098 pfam02550, AcetylCoA_hydro, Acetyl-CoA hydrolase/transferase N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 509
TIGR03458485 YgfH_subfam succinate CoA transferases. A closely 100.0
COG0427501 ACH1 Acetyl-CoA hydrolase [Energy production and c 100.0
KOG2828|consensus454 100.0
TIGR01110543 mdcA malonate decarboxylase, alpha subunit. This m 100.0
TIGR01584492 citF citrate lyase, alpha subunit. This is a model 100.0
COG4670527 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid 100.0
PF13336154 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase 100.0
PF04223466 CitF: Citrate lyase, alpha subunit (CitF); InterPr 100.0
KOG3822|consensus516 100.0
TIGR02428207 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit 100.0
COG3051513 CitF Citrate lyase, alpha subunit [Energy producti 100.0
PF02550198 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase 100.0
PRK09920219 acetyl-CoA:acetoacetyl-CoA transferase subunit alp 99.92
COG2057225 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, 99.91
TIGR02429222 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit 99.89
COG1788220 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, 99.88
PF01144217 CoA_trans: Coenzyme A transferase; InterPro: IPR00 99.37
PF01144217 CoA_trans: Coenzyme A transferase; InterPro: IPR00 96.39
TIGR01110 543 mdcA malonate decarboxylase, alpha subunit. This m 96.31
PRK10906252 DNA-binding transcriptional repressor GlpR; Provis 96.21
TIGR01584 492 citF citrate lyase, alpha subunit. This is a model 95.91
PF00455161 DeoRC: DeoR C terminal sensor domain; InterPro: IP 95.66
COG1349253 GlpR Transcriptional regulators of sugar metabolis 95.31
cd01398213 RPI_A RPI_A: Ribose 5-phosphate isomerase type A ( 95.18
TIGR03458 485 YgfH_subfam succinate CoA transferases. A closely 94.77
PRK10681252 DNA-binding transcriptional repressor DeoR; Provis 94.6
PLN02384264 ribose-5-phosphate isomerase 94.55
COG3051 513 CitF Citrate lyase, alpha subunit [Energy producti 94.49
TIGR00021218 rpiA ribose 5-phosphate isomerase. This model desc 94.48
PF04223 466 CitF: Citrate lyase, alpha subunit (CitF); InterPr 94.28
PRK10906252 DNA-binding transcriptional repressor GlpR; Provis 94.15
PRK09920219 acetyl-CoA:acetoacetyl-CoA transferase subunit alp 94.06
PRK10434256 srlR DNA-bindng transcriptional repressor SrlR; Pr 94.05
PRK10411240 DNA-binding transcriptional activator FucR; Provis 93.08
PRK13509251 transcriptional repressor UlaR; Provisional 93.03
PRK13978228 ribose-5-phosphate isomerase A; Provisional 92.75
PRK09802269 DNA-binding transcriptional regulator AgaR; Provis 92.65
PRK00702220 ribose-5-phosphate isomerase A; Provisional 92.49
PF00455161 DeoRC: DeoR C terminal sensor domain; InterPro: IP 91.91
COG1349253 GlpR Transcriptional regulators of sugar metabolis 91.74
TIGR02429222 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit 91.4
COG4670 527 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid 91.31
COG1788220 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, 91.26
COG0120227 RpiA Ribose 5-phosphate isomerase [Carbohydrate tr 86.9
PRK09802269 DNA-binding transcriptional regulator AgaR; Provis 86.25
PRK10681252 DNA-binding transcriptional repressor DeoR; Provis 85.1
TIGR02428207 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit 83.92
PRK10434256 srlR DNA-bindng transcriptional repressor SrlR; Pr 83.61
PRK00702220 ribose-5-phosphate isomerase A; Provisional 81.43
PRK10411240 DNA-binding transcriptional activator FucR; Provis 80.89
COG2057225 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, 80.3
PRK13509251 transcriptional repressor UlaR; Provisional 80.08
>TIGR03458 YgfH_subfam succinate CoA transferases Back     alignment and domain information 
Probab=100.00  E-value=1.6e-106  Score=861.36  Aligned_cols=429  Identities=28%  Similarity=0.374  Sum_probs=392.2

Q ss_pred             ccCCHHHHhhcCCCCCEEEEcCC--CCChHHHHHHHHHhHh----cCCCcceEEEEeecCCCCCCCCCC-CCcEEEe-cc
Q psy2323          15 ELISKEQAVQFIKPNSLVFVEGV--VGTPKVLMNAMYDHVK----SKNIQGVTVLDVFSLYPYDNMTPE-DDCVRRL-SF   86 (509)
Q Consensus        15 Kv~SaeEA~~~I~dGdtI~~gg~--~g~P~~Ll~AL~~r~~----~~~~kdLtl~~~~~~g~~~~~~~~-~~~v~~~-s~   86 (509)
                      |++|++||+++|||||+|++||+  +++|.+|++||++|++    ++++++|+++++.+.++..+.... .+++++. +|
T Consensus         1 KliSaeEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~is~   80 (485)
T TIGR03458         1 KVMSADEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPY   80 (485)
T ss_pred             CcCCHHHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEecc
Confidence            56999999999999999999998  8999999999999986    235689999998887663333223 5788876 79


Q ss_pred             ccCHHHHHHHHcCCceeecCCCChHHHHHHccC-CCCcEEEEEecCCCCCCcEEeccCcchhHHHHhccCcEEEEecccC
Q psy2323          87 FVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGY-FSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRM  165 (509)
Q Consensus        87 f~~~~~r~~i~~G~i~f~P~~ls~~~~~l~~g~-~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~a~aAk~VIvEVn~~v  165 (509)
                      |.++.+|+++++|+++|+|.+|++++++++++. .++|||+++|||||++||||||.++++.++++++||+||+|||++|
T Consensus        81 ~~sp~~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~~~~~aa~aAk~VIvEVN~~m  160 (485)
T TIGR03458        81 QSDPTLRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNPTFLELADKVIVEVNTWQ  160 (485)
T ss_pred             cCCHHHHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccchHHHHHHhCCEEEEEECCCC
Confidence            999999999999999999999999999998776 4899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceee--ecceeEEEEcCCCCCCCCCCCccccCCC
Q psy2323         166 PRSLGEALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVH--VSEIDYGVEVSYELFSPGKGGWLLFSPG  243 (509)
Q Consensus       166 P~~~g~~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~--~~~vd~vVe~~~p~~~p~~~~~~~~~p~  243 (509)
                      |+++|.             +||+++.-..|.+-++|+....||||.+.|+  .+.||+|||++.|+.+            
T Consensus       161 P~~~~~-------------~~~~~~~~~~p~~~~ip~~~~~~~~G~~~i~i~~s~vd~ive~~~pl~~------------  215 (485)
T TIGR03458       161 PLELEG-------------MHDIYEPGDPPHRRPIPITTPGDRIGTPYIQIDPDKIVAVVETNAPDRN------------  215 (485)
T ss_pred             Chhhhc-------------cccccccCCCCcCccccccCccccCCCcceeCCHHHeEEEEEcCCCCcc------------
Confidence            999763             1333333445556677788889999999998  5699999999999887            


Q ss_pred             CCCcccCCCCCCCCCHHHHHHHHHHHHhhcC----CC------CeeccccCchHHHHHHhhhcc--CCeeEEeCCcchhH
Q psy2323         244 KGSWLLFSPATEEVTEIDSAIANHICDELLE----DE------ATLQIGLGKIPEAILSNIKHQ--INLGVHTELLTPGV  311 (509)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~Ia~~va~~~i~----dg------~~lqlGiG~ip~aV~~~L~~~--~~lgihtE~~~d~~  311 (509)
                              .+..++++++++||++||+ +|+    ||      +|||+|||+|||||+..|.++  |||||||||++|++
T Consensus       216 --------~~~~~~~~~~~~Ia~~va~-~i~~~~~dG~~~~~~~tlQ~GiG~ipnAv~~~L~~~~~kdLgihtem~~d~~  286 (485)
T TIGR03458       216 --------SPFTPPDEVSQKIAGHLID-FLDHEVKAGRLPKNLLPLQSGVGNIANAVLAGLGDSPFENLTMYTEVIQDSM  286 (485)
T ss_pred             --------CCCCCcCHHHHHHHHHHHH-HHHHHHhcCCCCCCCCceeecCChHHHHHHHHHhcCCCCCceEEeeechHhH
Confidence                    7778899999999999999 876    88      999999999999999999988  99999999999999


Q ss_pred             HHHHHhcCcccccccccCCceeeeccCCChhhHHHhhc----CCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCC
Q psy2323         312 IKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHN----NELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQ  387 (509)
Q Consensus       312 ~~l~e~G~i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~----n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~  387 (509)
                      ++|+|+|+++|+        ++++|++|++.+|+|+++    ||.+.|+|++|||||++|+++ +|+|||+|+||||+||
T Consensus       287 ~~L~~~G~i~~~--------~v~~~~~g~~~~~~~~~~~d~~n~~~~~~p~~~tn~p~vi~~~-~~vsiNsaievDL~Gq  357 (485)
T TIGR03458       287 LDLIDSGKLTFA--------SATSLTLSPEALERFYANIDFYRDKIVLRPQEISNHPEIIRRL-GVIAINTAIEADIYGN  357 (485)
T ss_pred             HHHHHCCCcccc--------eEEEEEecHHHHHHHHhhhhhcCCcEEEeccceeCCHHHHhhC-CeEEEehheEeccCce
Confidence            999999999996        589999999888888777    999999999999999999998 8999999999999999


Q ss_pred             ccccC-CCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEEEccceEEE
Q psy2323         388 VVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVTEYGCAD  465 (509)
Q Consensus       388 vn~~~-~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~  465 (509)
                      ||||+ +|+|++||+|||.||+|||++|       |||+|||+ ++| +|||||+|+   +||++|+++||||||||+|+
T Consensus       358 v~se~~~g~~~~sG~GGq~DF~rgA~~S-------iial~st~-~~g~~S~Ivp~l~---~vt~~r~dv~~vVTE~G~A~  426 (485)
T TIGR03458       358 VNSTHVMGTKMMNGIGGSGDFARNAYLS-------IFMTPSIA-KGGKISSIVPMVS---HVDHTEHDVMVIVTEQGLAD  426 (485)
T ss_pred             eeeecccCceEEecCccHHHHHHHHhhh-------hEEeeeec-CCCceeeEeecCC---CcCCchhhCCEEEecCEEEE
Confidence            99998 7999999999999999999998       99999998 888 899999997   89999999999999999999


Q ss_pred             cCCCCHHHHHHHhh-ccCCCccHHHHHHHHHHH
Q psy2323         466 LFAKSTRQRAHALI-RIAHPQHREALEREAYEI  497 (509)
Q Consensus       466 LrG~~l~ErA~~li-~iAhp~fr~~L~~~a~~~  497 (509)
                      |||||++|||++|| +||||+||++|.++|++.
T Consensus       427 LrG~s~~eRa~~lI~~iAhP~fR~~L~~~~~~~  459 (485)
T TIGR03458       427 LRGLSPRERARAIIDNCAHPDYRDLLRDYYERA  459 (485)
T ss_pred             ecCCCHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            99999999999999 799999999999999988

A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion] Back     alignment and domain information
>KOG2828|consensus Back     alignment and domain information
>TIGR01110 mdcA malonate decarboxylase, alpha subunit Back     alignment and domain information
>TIGR01584 citF citrate lyase, alpha subunit Back     alignment and domain information
>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism] Back     alignment and domain information
>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B Back     alignment and domain information
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2 Back     alignment and domain information
>KOG3822|consensus Back     alignment and domain information
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit Back     alignment and domain information
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA Back     alignment and domain information
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional Back     alignment and domain information
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism] Back     alignment and domain information
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit Back     alignment and domain information
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another Back     alignment and domain information
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another Back     alignment and domain information
>TIGR01110 mdcA malonate decarboxylase, alpha subunit Back     alignment and domain information
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional Back     alignment and domain information
>TIGR01584 citF citrate lyase, alpha subunit Back     alignment and domain information
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>TIGR03458 YgfH_subfam succinate CoA transferases Back     alignment and domain information
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional Back     alignment and domain information
>PLN02384 ribose-5-phosphate isomerase Back     alignment and domain information
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>TIGR00021 rpiA ribose 5-phosphate isomerase Back     alignment and domain information
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2 Back     alignment and domain information
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional Back     alignment and domain information
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional Back     alignment and domain information
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional Back     alignment and domain information
>PRK10411 DNA-binding transcriptional activator FucR; Provisional Back     alignment and domain information
>PRK13509 transcriptional repressor UlaR; Provisional Back     alignment and domain information
>PRK13978 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional Back     alignment and domain information
>PRK00702 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit Back     alignment and domain information
>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism] Back     alignment and domain information
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional Back     alignment and domain information
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional Back     alignment and domain information
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit Back     alignment and domain information
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional Back     alignment and domain information
>PRK00702 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>PRK10411 DNA-binding transcriptional activator FucR; Provisional Back     alignment and domain information
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism] Back     alignment and domain information
>PRK13509 transcriptional repressor UlaR; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query509
3gk7_A448 Crystal Structure Of 4-Hydroxybutyrate Coa-Transfer 6e-82
2oas_A436 Crystal Structure Of 4-Hydroxybutyrate Coenzyme A T 4e-75
3eh7_A434 The Structure Of A Putative 4-Hydroxybutyrate Coa-T 6e-69
3d3u_A439 Crystal Structure Of 4-Hydroxybutyrate Coa-Transfer 3e-62
3qli_A455 Crystal Structure Of Ripa From Yersinia Pestis Leng 3e-47
3s8d_A455 Crystal Structure Of Ripa From Yersinia Pestis Leng 2e-44
2nvv_A506 Crystal Structure Of The Putative Acetyl-Coa Hydrol 2e-21
4eu8_A514 Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) 1e-11
4eu9_A514 Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) 1e-11
4eu3_A514 Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Co 1e-11
4eud_A505 Succinyl-Coa:acetate Coa-Transferase (Aarc) In Comp 1e-11
4eub_A514 Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) 6e-11
2g39_A497 Crystal Structure Of Coenzyme A Transferase From Ps 2e-08
>pdb|3GK7|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase From Clostridium Aminobutyricum Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  301 bits (771), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 181/497 (36%), Positives = 269/497 (54%), Gaps = 72/497 (14%)
Query: 1   MSAKKHYSTTTSSMELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGV 60
           M  KK Y   T + +     +AV+ IK    V     V  P VL+ AM     +   + V
Sbjct: 1   MDWKKIYEDRTCTAD-----EAVKSIKSGDRVLFAHCVAEPPVLVEAMV--ANAAAYKNV 53
Query: 61  TVLDVFSLYPYDNMTPE-DDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGY 119
           TV  + +L   +   PE  +      +F SP TR  +  G  +++P+  +++P +  +  
Sbjct: 54  TVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDI 113
Query: 120 FSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEI 179
           F  DV ++ VSPPD +GF  +G +    +  I+ +K V+A++ND++P             
Sbjct: 114 FHVDVFMVMVSPPDHNGFCCVGVSSDYTMQAIKSAKIVLAEVNDQVPV------------ 161
Query: 180 DYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLL 239
                          VY             G   VHVSEID  VE S+ L   G      
Sbjct: 162 ---------------VY-------------GDTFVHVSEIDKFVETSHPLPEIG------ 187
Query: 240 FSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQIN 299
                           ++ E+++AI  H C  L+ED +TLQ+G+G IP+A+LS +K + +
Sbjct: 188 --------------LPKIGEVEAAIGKH-CASLIEDGSTLQLGIGAIPDAVLSQLKDKKH 232
Query: 300 LGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGT 359
           LG+H+E+++ GV+ L+ +GVI+ S+KSID+G++  T L+G K LYDF  NN  V++K   
Sbjct: 233 LGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVD 292
Query: 360 YSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKG 419
           Y N P+++ Q  +M  IN CL++D  GQ+VSDS+GT+ +SG GGQVDF+RGA   +DGKG
Sbjct: 293 YINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQVDFVRGASMSIDGKG 352
Query: 420 KAILALPST---DVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAH 476
           KAI+A+PS       + +SKIVP I  GA V  SR    YVVTEYG A++  KS + RA 
Sbjct: 353 KAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMKGKSLQDRAR 412
Query: 477 ALIRIAHPQHREALERE 493
           ALI IAHP  ++ L+ E
Sbjct: 413 ALINIAHPDFKDELKAE 429
>pdb|2OAS|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A Transferase (Atoa) In Complex With Coa From Shewanella Oneidensis, Northeast Structural Genomics Target Sor119. Length = 436 Back     alignment and structure
>pdb|3EH7|A Chain A, The Structure Of A Putative 4-Hydroxybutyrate Coa-Transferase From Porphyromonas Gingivalis W83 Length = 434 Back     alignment and structure
>pdb|3D3U|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase (Abft-2) From Porphyromonas Gingivalis. Northeast Structural Genomics Consortium Target Pgr26 Length = 439 Back     alignment and structure
>pdb|3QLI|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis Length = 455 Back     alignment and structure
>pdb|3S8D|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis Length = 455 Back     alignment and structure
>pdb|2NVV|A Chain A, Crystal Structure Of The Putative Acetyl-Coa HydrolaseTRANSFERASE Pg1013 From Porphyromonas Gingivalis, Northeast Structural Genomics Target Pgr16. Length = 506 Back     alignment and structure
>pdb|4EU8|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In Complex With Coa Length = 514 Back     alignment and structure
>pdb|4EU9|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In Complex With Coa And A Covalent Glutamyl-Coa Thioester Adduct Length = 514 Back     alignment and structure
>pdb|4EU3|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex With Citrate (Subunit B) Or Unliganded (Subunit A) Length = 514 Back     alignment and structure
>pdb|4EUD|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex With Coa And Citrate Length = 505 Back     alignment and structure
>pdb|4EUB|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In Complex With Coa Length = 514 Back     alignment and structure
>pdb|2G39|A Chain A, Crystal Structure Of Coenzyme A Transferase From Pseudomonas Aeruginosa Length = 497 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query509
3gk7_A448 4-hydroxybutyrate COA-transferase; alpha/beta prot 1e-156
3eh7_A434 4-hydroxybutyrate COA-transferase; citrate lyase, 1e-154
2oas_A436 ATOA, 4-hydroxybutyrate coenzyme A transferase; al 1e-151
3d3u_A439 4-hydroxybutyrate COA-transferase; alpha-beta prot 1e-148
3qli_A455 Coenzyme A transferase; COEN transferase; 1.90A {Y 1e-143
2nvv_A506 Acetyl-COA hydrolase/transferase family protein; a 1e-125
2g39_A497 Acetyl-COA hydrolase; coenzyme A transferase, stru 1e-122
1xr4_A509 Putative citrate lyase alpha chain/citrate-ACP TR; 2e-71
2hj0_A519 Putative citrate lyase, ALFA subunit; alpha beta p 1e-57
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A* Length = 448 Back     alignment and structure
 Score =  451 bits (1163), Expect = e-156
 Identities = 177/507 (34%), Positives = 267/507 (52%), Gaps = 72/507 (14%)

Query: 1   MSAKKHYSTTTSSMELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGV 60
           M  KK Y          + ++AV+ IK    V     V  P VL+ AM  +      + V
Sbjct: 1   MDWKKIYED-----RTCTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAA--AYKNV 53

Query: 61  TVLDVFSLYPYDNMTPE-DDCVRRLSFFVSPYTRKYVNTGAAEYIPIMLNDLPMVFDRGY 119
           TV  + +L   +   PE  +      +F SP TR  +  G  +++P+  +++P +  +  
Sbjct: 54  TVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDI 113

Query: 120 FSPDVALISVSPPDASGFVSLGTNVVELLSVIRGSKRVIAQINDRMPRSLGEALVHVSEI 179
           F  DV ++ VSPPD +GF  +G +    +  I+ +K V+A++ND++P   G+  VHVSEI
Sbjct: 114 FHVDVFMVMVSPPDHNGFCCVGVSSDYTMQAIKSAKIVLAEVNDQVPVVYGDTFVHVSEI 173

Query: 180 DYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYELFSPGKGGWLL 239
                                                   D  VE S+ L   G      
Sbjct: 174 ----------------------------------------DKFVETSHPLPEIGLP---- 189

Query: 240 FSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQIN 299
                           ++ E+++AI  H    L+ED +TLQ+G+G IP+A+LS +K + +
Sbjct: 190 ----------------KIGEVEAAIGKHCAS-LIEDGSTLQLGIGAIPDAVLSQLKDKKH 232

Query: 300 LGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGT 359
           LG+H+E+++ GV+ L+ +GVI+ S+KSID+G++  T L+G K LYDF  NN  V++K   
Sbjct: 233 LGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVD 292

Query: 360 YSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKG 419
           Y N P+++ Q  +M  IN CL++D  GQ+VSDS+GT+ +SG GGQVDF+RGA   +DGKG
Sbjct: 293 YINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQVDFVRGASMSIDGKG 352

Query: 420 KAILALPST---DVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAH 476
           KAI+A+PS       + +SKIVP I  GA V  SR    YVVTEYG A++  KS + RA 
Sbjct: 353 KAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMKGKSLQDRAR 412

Query: 477 ALIRIAHPQHREALEREAYEILKVMPK 503
           ALI IAHP  ++ L+ E  +       
Sbjct: 413 ALINIAHPDFKDELKAEFEKRFNAAFS 439
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis} Length = 434 Back     alignment and structure
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis} Length = 436 Back     alignment and structure
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis} Length = 439 Back     alignment and structure
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A Length = 455 Back     alignment and structure
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis} Length = 506 Back     alignment and structure
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2 Length = 497 Back     alignment and structure
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2 Length = 509 Back     alignment and structure
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans} Length = 519 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query509
3qli_A455 Coenzyme A transferase; COEN transferase; 1.90A {Y 100.0
3eh7_A434 4-hydroxybutyrate COA-transferase; citrate lyase, 100.0
3gk7_A448 4-hydroxybutyrate COA-transferase; alpha/beta prot 100.0
2oas_A436 ATOA, 4-hydroxybutyrate coenzyme A transferase; al 100.0
3d3u_A439 4-hydroxybutyrate COA-transferase; alpha-beta prot 100.0
2g39_A497 Acetyl-COA hydrolase; coenzyme A transferase, stru 100.0
2nvv_A506 Acetyl-COA hydrolase/transferase family protein; a 100.0
4eu9_A514 Succinyl-COA:acetate coenzyme A transferase; HET: 100.0
1xr4_A509 Putative citrate lyase alpha chain/citrate-ACP TR; 100.0
2hj0_A519 Putative citrate lyase, ALFA subunit; alpha beta p 100.0
2ahu_A531 Putative enzyme YDIF; COA transferase, glutamyl th 100.0
3k6m_A481 Succinyl-COA:3-ketoacid-coenzyme A transferase 1, 100.0
1poi_A317 Glutaconate coenzyme A-transferase; COA, glutamate 100.0
3rrl_B207 Succinyl-COA:3-ketoacid-coenzyme A transferase SU; 100.0
1poi_B260 Glutaconate coenzyme A-transferase; COA, glutamate 99.97
1k6d_A220 Acetate COA-transferase alpha subunit; structural 99.95
3cdk_A241 Succinyl-COA:3-ketoacid-coenzyme A transferase sub 99.94
3rrl_A235 Succinyl-COA:3-ketoacid-coenzyme A transferase SU; 99.94
1k6d_A220 Acetate COA-transferase alpha subunit; structural 97.04
3rrl_A235 Succinyl-COA:3-ketoacid-coenzyme A transferase SU; 96.93
3cdk_A241 Succinyl-COA:3-ketoacid-coenzyme A transferase sub 96.81
1poi_A317 Glutaconate coenzyme A-transferase; COA, glutamate 96.47
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 95.99
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 95.89
2hj0_A 519 Putative citrate lyase, ALFA subunit; alpha beta p 95.75
2g39_A 497 Acetyl-COA hydrolase; coenzyme A transferase, stru 95.65
1xr4_A 509 Putative citrate lyase alpha chain/citrate-ACP TR; 95.62
2nvv_A 506 Acetyl-COA hydrolase/transferase family protein; a 95.22
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 95.17
3d3u_A 439 4-hydroxybutyrate COA-transferase; alpha-beta prot 95.15
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 95.12
2ahu_A 531 Putative enzyme YDIF; COA transferase, glutamyl th 95.03
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 94.95
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 94.81
2oas_A 436 ATOA, 4-hydroxybutyrate coenzyme A transferase; al 94.72
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 93.97
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 93.0
1poi_B260 Glutaconate coenzyme A-transferase; COA, glutamate 92.33
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 92.1
4gmk_A228 Ribose-5-phosphate isomerase A; D-ribose-5-phospha 91.63
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 91.41
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 91.38
3eh7_A 434 4-hydroxybutyrate COA-transferase; citrate lyase, 91.34
4eu9_A 514 Succinyl-COA:acetate coenzyme A transferase; HET: 91.25
3qli_A 455 Coenzyme A transferase; COEN transferase; 1.90A {Y 89.48
3gk7_A 448 4-hydroxybutyrate COA-transferase; alpha/beta prot 88.73
3rrl_B207 Succinyl-COA:3-ketoacid-coenzyme A transferase SU; 87.07
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 84.51
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 83.31
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 83.21
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 83.18
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A Back     alignment and structure
Probab=100.00  E-value=3.4e-112  Score=897.26  Aligned_cols=425  Identities=32%  Similarity=0.546  Sum_probs=404.6

Q ss_pred             CCchhhhhhccCCCccCCHHHHhhcCCCCCEEEEcCCCCChHHHHHHHHHhHhcCCCcceEEEEeecCCCC--CCCCCC-
Q psy2323           1 MSAKKHYSTTTSSMELISKEQAVQFIKPNSLVFVEGVVGTPKVLMNAMYDHVKSKNIQGVTVLDVFSLYPY--DNMTPE-   77 (509)
Q Consensus         1 ~~~~~~y~~~~~~~Kv~SaeEA~~~I~dGdtI~~gg~~g~P~~Ll~AL~~r~~~~~~kdLtl~~~~~~g~~--~~~~~~-   77 (509)
                      |+|+++|++|   +  +|++||+++|+|||+|++||++|+|++|++||++|++++++++||++++++.|+.  .++.++ 
T Consensus        16 m~~~~~y~~K---~--vsaeEAv~lIkdGdtV~~gG~~g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~   90 (455)
T 3qli_A           16 MDIRALYDEK---L--TTPEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYEL   90 (455)
T ss_dssp             CCHHHHHHHH---B--CCHHHHTTTCCTTCEEEECSGGGSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGG
T ss_pred             cCHHHHHHhc---C--CCHHHHHHhCCCCCEEEECCcccCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhh
Confidence            7899999999   4  8999999999999999999999999999999999987678999999999888753  355554 


Q ss_pred             CCcEEEeccccCHHHHHHHHcCC-------ceeecCCCChHHHHHHccCCCCcEEEEEecCCCCCCcEEeccCcchhHHH
Q psy2323          78 DDCVRRLSFFVSPYTRKYVNTGA-------AEYIPIMLNDLPMVFDRGYFSPDVALISVSPPDASGFVSLGTNVVELLSV  150 (509)
Q Consensus        78 ~~~v~~~s~f~~~~~r~~i~~G~-------i~f~P~~ls~~~~~l~~g~~~iDVAlI~vs~~De~Gn~slg~s~~~~~~~  150 (509)
                      .+++++.+||+++..|+++++|+       ++|+|.|||++|+++++ .+++|||+++|+++|++|||+||++.++++++
T Consensus        91 ~~~~~~~~~f~~~~~R~~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~-~~~iDVAli~vs~~D~~G~~s~g~s~~~~~~~  169 (455)
T 3qli_A           91 NNRIKPYSMFVTAVERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAE-EIGIDTFMHTVSPMDCHGYFSLGVGNDYSSRI  169 (455)
T ss_dssp             TTTEEEEESSCCHHHHHHHHHHHHTTTCCCCCCCCCCGGGHHHHHHT-TTCCSEEEEEECCCCTTSEEECTTBCBTHHHH
T ss_pred             cCcEEEeeCcCChhHHHHHhCCCcccCcCcEEEECccHHHHHHHHHh-cCCCCEEEEEEecCCCCceEEEccCCCchHHH
Confidence            78899999999999999999997       99999999999999986 67999999999999999999999999999999


Q ss_pred             HhccCcEEEEecccCCCCCCC-ccccCCcccEEeccchhhhhhcceeeeeeeeccCCccCCcceeeecceeEEEEcCCCC
Q psy2323         151 IRGSKRVIAQINDRMPRSLGE-ALVHVSEIDYKEKLSDLIRYVCQVYLIVCVLIRMPRSLGKALVHVSEIDYGVEVSYEL  229 (509)
Q Consensus       151 a~aAk~VIvEVn~~vP~~~g~-~~i~~~~Vd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~vd~vVe~~~p~  229 (509)
                      +++||+||+|||++||++.|+ ..||+++||+|                                        ||++.|+
T Consensus       170 a~~Ak~VI~EVN~~vP~~~g~r~~I~~~~Vd~i----------------------------------------Ve~~~p~  209 (455)
T 3qli_A          170 ARSARRFIVEVNRYMPRVQGEAAAIHISEVDAI----------------------------------------VENHVPL  209 (455)
T ss_dssp             HHHSSEEEEEECTTSCCCCBTTCEEEGGGCSEE----------------------------------------EECCCCC
T ss_pred             HhhcCEEEEEecCCCCCCCCCCCcCChHHcEEE----------------------------------------EECCCCC
Confidence            999999999999999999887 77887777666                                        9999887


Q ss_pred             CCCCCCCccccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCCCeeccccCchHHHHHHhhhccCCeeEEeCCcch
Q psy2323         230 FSPGKGGWLLFSPGKGSWLLFSPATEEVTEIDSAIANHICDELLEDEATLQIGLGKIPEAILSNIKHQINLGVHTELLTP  309 (509)
Q Consensus       230 ~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ia~~va~~~i~dg~~lqlGiG~ip~aV~~~L~~~~~lgihtE~~~d  309 (509)
                      ..                    .+..++++++++||+|+|+ +|+||+|||+|||+||+||++.|.+++|||+||||++|
T Consensus       210 ~~--------------------~~~~~~~~~~~~Ia~~va~-~i~dG~~lQ~GiG~ip~Av~~~L~~~~~lgi~tE~~~d  268 (455)
T 3qli_A          210 IE--------------------MPVRSAIPEYTSISHIIAD-LVPDGACLQMGVGALPNLVCGVLKDRNDLGIHTEVLNP  268 (455)
T ss_dssp             CC--------------------CCCCCCCTHHHHHHHHHHH-TCCTTCEEEECSSHHHHHHHHHGGGCCSBEEBCSEECH
T ss_pred             cc--------------------CCCCCCChHHHHHHHHHHH-HhcCCCeEEeccchHHHHHHHhcCcCCCeEEEcCCccc
Confidence            76                    6777899999999999999 99999999999999999999999999999999999999


Q ss_pred             hHHHHHHhcCcccccccccCCceeeeccCCChhhHHHhhcCCcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCcc
Q psy2323         310 GVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVV  389 (509)
Q Consensus       310 ~~~~l~e~G~i~~~~k~~~~g~~~~~~~~G~~~ly~~i~~n~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn  389 (509)
                      ++++|+|+|++++++|++++|+++++|++|++++|+|+++||+|.|+|++|+|+|++|+++++++|||+|+|||++||||
T Consensus       269 ~~~dLi~aG~i~~~~K~~~~G~~v~~f~~gs~~ly~~~~~np~~~~~~~~y~N~p~~i~~~~~~i~in~a~evd~~G~v~  348 (455)
T 3qli_A          269 GLVDLIRRGVVTNQRKTLDRGRSVFTFAMGQQEMYEYLNDHPAIFSRPVDYVNDPHIIAQNDNVVSINATLQIDLTGACN  348 (455)
T ss_dssp             HHHHHHHHTCBCCTTCSSSTTSEEESEECCCHHHHHHHTTCTTEEECBHHHHTCHHHHTTSTTEEEEEECSEEETTSCEE
T ss_pred             chHHHHHCCCcccccccccCCceEEEeccchHHHHHHHhhCCCEEEeeccccCCHHHHhCCCCcEEeeeeEEEecCCCee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCccccccccHHHHhcccccCCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEEEccceEEEcCC
Q psy2323         390 SDSLGTRIYSGFGGQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFA  468 (509)
Q Consensus       390 ~~~~g~r~~sG~GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~LrG  468 (509)
                      +|++|++++||+|||+||++||++|+|  ||+|||+|||+ |+| +|||||+|+  .+||++|++|||||||||||+|||
T Consensus       349 ~~~~~~~~~~G~GG~~Df~~gA~~s~g--gk~ii~~~s~~-k~G~is~Iv~~~~--~~vtt~~~~v~~vvTE~Gva~l~G  423 (455)
T 3qli_A          349 SEHMLGHQYSASGGQLDFVRGAYASKG--GRSIIATPSTA-AKGTVSRIIPRID--GPVTTPRIDTHYIVTEFGAVNLKG  423 (455)
T ss_dssp             CCCSTTCCCGGGSSHHHHHHHHHHSTT--CEEEEECCSEE-TTTTEESEESCCS--SSCSBCTTTCCEEEETTEEEECTT
T ss_pred             eeccCCeeecCcChhHHHHHHHhhcCC--CcEEEEEeCcc-CCCCCCeEeccCC--CCcccCcccccEEEeccEEEECCC
Confidence            999999999999999999999999999  99999999999 999 899999998  479999999999999999999999


Q ss_pred             CCHHHHHHHhhccCCCccHHHHHHHHHHH
Q psy2323         469 KSTRQRAHALIRIAHPQHREALEREAYEI  497 (509)
Q Consensus       469 ~~l~ErA~~li~iAhp~fr~~L~~~a~~~  497 (509)
                      |+++|||++||+||||||||+|.++|+++
T Consensus       424 ~s~~eRa~~lI~iAHPdfR~~L~~~A~~~  452 (455)
T 3qli_A          424 LSSTERALRIIELAHPDFRDELTQAAKKM  452 (455)
T ss_dssp             CCHHHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHccCcchHHHHHHHHHHc
Confidence            99999999999999999999999999986
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis} Back     alignment and structure
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A* Back     alignment and structure
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis} Back     alignment and structure
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis} Back     alignment and structure
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis} Back     alignment and structure
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A* Back     alignment and structure
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans} Back     alignment and structure
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A* Back     alignment and structure
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A Back     alignment and structure
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2 Back     alignment and structure
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B Back     alignment and structure
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3 Back     alignment and structure
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2 Back     alignment and structure
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis} Back     alignment and structure
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} Back     alignment and structure
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2 Back     alignment and structure
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} Back     alignment and structure
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis} Back     alignment and structure
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2 Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Back     alignment and structure
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans} Back     alignment and structure
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis} Back     alignment and structure
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis} Back     alignment and structure
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Back     alignment and structure
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A* Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Back     alignment and structure
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis} Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Back     alignment and structure
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3 Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Back     alignment and structure
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius} Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Back     alignment and structure
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis} Back     alignment and structure
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A* Back     alignment and structure
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A Back     alignment and structure
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A* Back     alignment and structure
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Back     alignment and structure
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 509
d2g39a2274 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445 1e-66
d1xr4a2269 c.124.1.2 (A:237-505) Putative citrate lyase alpha 2e-52
d2g39a1221 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) 3e-33
d1ooya1221 c.124.1.3 (A:261-481) Succinate:CoA transferase, C 7e-22
>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Length = 274 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetyl-CoA hydrolase (PA5445)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  213 bits (545), Expect = 1e-66
 Identities = 61/255 (23%), Positives = 99/255 (38%), Gaps = 28/255 (10%)

Query: 258 TEIDSAIANHICD---------ELLEDEATLQIGLGKIPEAILSNI--KHQINLGVHTEL 306
                AIANH+ D          +      LQ G+G I  A++  +      NL +++E+
Sbjct: 7   DGETQAIANHLIDFFKREVDAGRMSNSLGPLQAGIGSIANAVMCGLIESPFENLTMYSEV 66

Query: 307 LTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAI 366
           L      L ++G +         G         +  ++  +   +   + R    ++   
Sbjct: 67  LQDSTFDLIDAGKLRF-----ASGSSITLSPRRNADVFGNLERYKDKLVLRPQEISNHPE 121

Query: 367 IRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGKGKAILAL 425
           + +   +  INT LE DI G V S  + GT++ +G GG  DF R A         AI   
Sbjct: 122 VVRRLGIIGINTALEFDIYGNVNSTHVGGTKMMNGIGGSGDFARNA-------HLAIFVT 174

Query: 426 PSTDVSTGLSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIR-IAHP 484
            S      +S +VP     + V  +   V  +VTE G ADL   + R+RA  +I    HP
Sbjct: 175 KSIAKGGNISSVVPM---VSHVDHTEHDVDILVTEQGLADLRGLAPRERARVIIENCVHP 231

Query: 485 QHREALEREAYEILK 499
            ++  L         
Sbjct: 232 SYQAPLLDYFEAACA 246
>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Length = 269 Back     information, alignment and structure
>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Length = 221 Back     information, alignment and structure
>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 221 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query509
d2g39a2274 Acetyl-CoA hydrolase (PA5445) {Pseudomonas aerugin 100.0
d1xr4a2269 Putative citrate lyase alpha chain, citF2 {Salmone 100.0
d2g39a1221 Acetyl-CoA hydrolase (PA5445) {Pseudomonas aerugin 100.0
d1ooya1221 Succinate:CoA transferase, C-terminal domain {Pig 99.98
d2ahua1247 Putative enzyme YdiF C-terminal domain {Escherichi 99.97
d1k6da_219 Acetate:CoA transferase alpha {Escherichia coli [T 99.93
d2ahua2273 Putative enzyme YdiF N-terminal domain {Escherichi 99.91
d1ooya2242 Succinate:CoA transferase, N-terminal domain {Pig 99.9
d1poia_317 Glutaconate:CoA transferase alpha {Acidaminococcus 99.86
d1poib_260 Glutaconate:CoA transferase beta {Acidaminococcus 99.77
d1xr4a1236 Putative citrate lyase alpha chain, citF2 {Salmone 99.62
d1k6da_219 Acetate:CoA transferase alpha {Escherichia coli [T 96.83
d1xr4a1236 Putative citrate lyase alpha chain, citF2 {Salmone 96.53
d2ahua2273 Putative enzyme YdiF N-terminal domain {Escherichi 96.13
d1poia_317 Glutaconate:CoA transferase alpha {Acidaminococcus 94.4
d2g39a1221 Acetyl-CoA hydrolase (PA5445) {Pseudomonas aerugin 94.3
d1ooya2242 Succinate:CoA transferase, N-terminal domain {Pig 94.06
d1uj4a1151 D-ribose-5-phosphate isomerase (RpiA), catalytic d 93.99
d1lk5a1149 D-ribose-5-phosphate isomerase (RpiA), catalytic d 93.92
d1m0sa1147 D-ribose-5-phosphate isomerase (RpiA), catalytic d 92.93
d2ahua1247 Putative enzyme YdiF C-terminal domain {Escherichi 90.62
d1lk5a1149 D-ribose-5-phosphate isomerase (RpiA), catalytic d 90.24
d1m0sa1147 D-ribose-5-phosphate isomerase (RpiA), catalytic d 89.01
d1poib_260 Glutaconate:CoA transferase beta {Acidaminococcus 88.78
d1uj4a1151 D-ribose-5-phosphate isomerase (RpiA), catalytic d 87.32
d1vb5a_274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 87.03
>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetyl-CoA hydrolase (PA5445)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=5.3e-66  Score=509.98  Aligned_cols=228  Identities=28%  Similarity=0.412  Sum_probs=209.6

Q ss_pred             CCCCHHHHHHHHHHHHh---------hcCCCCeeccccCchHHHHHHhhhcc--CCeeEEeCCcchhHHHHHHhcCcccc
Q psy2323         255 EEVTEIDSAIANHICDE---------LLEDEATLQIGLGKIPEAILSNIKHQ--INLGVHTELLTPGVIKLFNSGVINNS  323 (509)
Q Consensus       255 ~~~~~~~~~Ia~~va~~---------~i~dg~~lqlGiG~ip~aV~~~L~~~--~~lgihtE~~~d~~~~l~e~G~i~~~  323 (509)
                      .||++++++||+||++|         +++||+|||+|||+||+||+..|.++  +|||+|||||+|++++|+|+|++++.
T Consensus         4 ~Pp~~~~~~Ia~~v~~f~~~ei~~grLv~dG~tLQ~GIG~ip~AV~~~L~~~~~kdLgihtemitdg~~~L~e~G~i~~~   83 (274)
T d2g39a2           4 LPPDGETQAIANHLIDFFKREVDAGRMSNSLGPLQAGIGSIANAVMCGLIESPFENLTMYSEVLQDSTFDLIDAGKLRFA   83 (274)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHTTSSCTTCSCEEECSSHHHHHHHHGGGSSSCCSEEEECSEECHHHHHHHHTTCEEEE
T ss_pred             CCcChHHHHHHHHHHHHHHHHhhccCcCCCCCcceeccCHHHHHHHHHHhhCCCcCceEEEccccHHHHHHHHCCCeecc
Confidence            46899999999999985         57999999999999999999999876  99999999999999999999999986


Q ss_pred             cccccCCceeeeccCCChhhHHHhhcC-CcEEEeeccccCcHHHHhccCccEEeeceeeeecCCCccccCC-CCcccccc
Q psy2323         324 KKSIDRGQITATLLLGDKPLYDFVHNN-ELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGF  401 (509)
Q Consensus       324 ~k~~~~g~~~~~~~~G~~~ly~~i~~n-~~~~~~~~~~~n~p~~i~~~~~~vain~a~EvDl~G~vn~~~~-g~r~~sG~  401 (509)
                      .     |+.++.+..|+.++|+|+++| +.+.+++.+|+|+|.++++ ++|+|||+|+|||++||||+|++ |++++||+
T Consensus        84 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~vaINsAlEVDL~Gqvnse~i~G~r~~sG~  157 (274)
T d2g39a2          84 S-----GSSITLSPRRNADVFGNLERYKDKLVLRPQEISNHPEVVRR-LGIIGINTALEFDIYGNVNSTHVGGTKMMNGI  157 (274)
T ss_dssp             E-----ESEECCCHHHHHHHHHSGGGTGGGEEECBHHHHTCHHHHHH-HTCEEEEECSEEETTSCEESSEETTTEECSCC
T ss_pred             C-----CCeEEecchHHHHHHhhHHhcCcceecccccccCCHHHHhc-CCcEEEehhhecccCCcEEEeecCCcceecCC
Confidence            4     345666777788999999775 5788889999999988854 68999999999999999999997 77999999


Q ss_pred             ccHHHHhcccccCCCCCCcEEEEeecccCCCC-ccceeccccCCCccccCCCceEEEEccceEEEcCCCCHHHHHHHhhc
Q psy2323         402 GGQVDFMRGALTGLDGKGKAILALPSTDVSTG-LSKIVPTIKPGAGVVCSRAHVQYVVTEYGCADLFAKSTRQRAHALIR  480 (509)
Q Consensus       402 GG~~Df~~gA~~s~~~~g~~ii~~~st~~k~G-~skIV~~~~~g~~vt~~~~~v~~vVTE~Gva~LrG~~l~ErA~~li~  480 (509)
                      |||.||++||++|       |+++|||+ |+| +|||||+|+   +||++|++|||||||||+|+|||||++|||++||+
T Consensus       158 GGq~DF~rGA~~s-------Iial~st~-k~g~iS~IVp~~t---~vttpr~dVd~VVTEyGiA~LrG~s~~eRA~~lI~  226 (274)
T d2g39a2         158 GGSGDFARNAHLA-------IFVTKSIA-KGGNISSVVPMVS---HVDHTEHDVDILVTEQGLADLRGLAPRERARVIIE  226 (274)
T ss_dssp             TTHHHHHHHCSEE-------EEECCSEE-GGGTEESEESSCS---SCSBCGGGCCEEEETTEEEECTTCCHHHHHHHHHH
T ss_pred             cchHHHHhcCCeE-------EEEeeccc-CCCCcCcEeCCCC---CccCCCceeeEEEeCceEEEecCCCHHHHHHHHHH
Confidence            9999999999887       99999999 888 999999998   89999999999999999999999999999999995


Q ss_pred             -cCCCccHHHHHHHHHHHhc
Q psy2323         481 -IAHPQHREALEREAYEILK  499 (509)
Q Consensus       481 -iAhp~fr~~L~~~a~~~~~  499 (509)
                       ||||+||++|.++|++..+
T Consensus       227 ~iAhP~fR~~L~~~a~~a~~  246 (274)
T d2g39a2         227 NCVHPSYQAPLLDYFEAACA  246 (274)
T ss_dssp             HTSCTTTHHHHHHHHHHHHH
T ss_pred             HccCCchHHHHHHHHHHHHH
Confidence             9999999999999998654
>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure