Psyllid ID: psy234

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPGPLIKP
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEcHHHHHHHHHHHHHccccccHHccccEEEEcccccccccccHHHHHHHHHHHccccHHHHHccccccccccccccEEEEEEcccccccHHccHHHHHHHHHHHHHccccccccccccccEEEEEcHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccHHHHHHHHHHHHHEEEEEcccccHHHHHHHHccccccHHHHHHHcccHHHHHHHHHEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcHHHHHHHHHHHHHccccccccccEEEEEcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccEEEEEcHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASfrselpwtscnnawntanctpvtvhvnytssspakeffeRSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCrgvtlpgadegiryyltpqwhklknsKVWIDAASQIFFSLGPGFGTLLALSSYnkfdnncyrdaILTSSINCLTSFLAGFVIFSVLGYMAHVQnksvadvglegpglvfiVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIesmlghrpglyWRLCWTYISPFFLLTIFVFSLLgyedmisgeyvyppwsirlgwtltasslmcipsyIVYKLyttpgplikp
MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPGPLIKP
MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPGPLIKP
**GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTS********************LDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTP******
MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPGPLI**
MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPGPLIKP
MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPGPL***
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPGPLIKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query445 2.2.26 [Sep-21-2011]
P51905622 Sodium-dependent serotoni yes N/A 0.977 0.699 0.780 0.0
O35899630 Sodium-dependent serotoni no N/A 0.988 0.698 0.546 1e-142
O55192617 Sodium-dependent noradren yes N/A 0.986 0.711 0.524 1e-141
P23975617 Sodium-dependent noradren no N/A 0.986 0.711 0.522 1e-140
Q9MYX0630 Sodium-dependent serotoni yes N/A 0.984 0.695 0.546 1e-140
Q60857630 Sodium-dependent serotoni no N/A 0.988 0.698 0.546 1e-140
P31645630 Sodium-dependent serotoni no N/A 0.984 0.695 0.546 1e-139
P51143615 Sodium-dependent noradren yes N/A 0.986 0.713 0.511 1e-139
P31652630 Sodium-dependent serotoni no N/A 0.988 0.698 0.539 1e-138
Q9XT49630 Sodium-dependent serotoni no N/A 0.988 0.698 0.539 1e-138
>sp|P51905|SC6A4_DROME Sodium-dependent serotonin transporter OS=Drosophila melanogaster GN=SerT PE=2 SV=1 Back     alignment and function desciption
 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/438 (78%), Positives = 392/438 (89%), Gaps = 3/438 (0%)

Query: 1   MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVN 60
           + GVGYAICL+DIYMGMYYNTIIGWAVYYLFASF S+LPWTSC+N WNT NC  VT   N
Sbjct: 153 LKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTENCMQVTSE-N 211

Query: 61  YT--SSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGK 118
           +T  ++SPAKEFFER VLE  + +GLD +G +K +LALCV  VF+LVYFSLWKGVRSAGK
Sbjct: 212 FTELATSPAKEFFERKVLESYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGK 271

Query: 119 AVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGP 178
            VWVTALAPYVVLIILL RGV+LPGADEGI+YYLTP+WHKLKNSKVWIDAASQIFFSLGP
Sbjct: 272 VVWVTALAPYVVLIILLVRGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFSLGP 331

Query: 179 GFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGL 238
           GFGTLLALSSYNKF+NNCYRDA++TSSINCLTSFLAGFVIFSVLGYMA+VQ  S+  VGL
Sbjct: 332 GFGTLLALSSYNKFNNNCYRDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGL 391

Query: 239 EGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGR 298
           EGPGLVFIVYPEAIA M+GSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPR++GR
Sbjct: 392 EGPGLVFIVYPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIGR 451

Query: 299 HREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDR 358
            RE+FV +++ F+++CALPT TYGGV LVNFLNV+GPGLAILFVVFVEAAGV W YGVDR
Sbjct: 452 RRELFVLLLLAFIFLCALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEAAGVFWFYGVDR 511

Query: 359 FSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWT 418
           FS+D+E MLG +PGL+WR+CWTYISP FLLTIF+FS++GY++M+  EY YP WS ++GW 
Sbjct: 512 FSSDVEQMLGSKPGLFWRICWTYISPVFLLTIFIFSIMGYKEMLGEEYYYPDWSYQVGWA 571

Query: 419 LTASSLMCIPSYIVYKLY 436
           +T SS++CIP YI+YK +
Sbjct: 572 VTCSSVLCIPMYIIYKFF 589
Terminates the action of serotonin by its high affinity sodium-dependent reuptake into presynaptic terminals.
Drosophila melanogaster (taxid: 7227)
>sp|O35899|SC6A4_CAVPO Sodium-dependent serotonin transporter OS=Cavia porcellus GN=SLC6A4 PE=2 SV=1 Back     alignment and function description
>sp|O55192|SC6A2_MOUSE Sodium-dependent noradrenaline transporter OS=Mus musculus GN=Slc6a2 PE=2 SV=2 Back     alignment and function description
>sp|P23975|SC6A2_HUMAN Sodium-dependent noradrenaline transporter OS=Homo sapiens GN=SLC6A2 PE=1 SV=1 Back     alignment and function description
>sp|Q9MYX0|SC6A4_MACMU Sodium-dependent serotonin transporter OS=Macaca mulatta GN=SLC6A4 PE=2 SV=1 Back     alignment and function description
>sp|Q60857|SC6A4_MOUSE Sodium-dependent serotonin transporter OS=Mus musculus GN=Slc6a4 PE=1 SV=4 Back     alignment and function description
>sp|P31645|SC6A4_HUMAN Sodium-dependent serotonin transporter OS=Homo sapiens GN=SLC6A4 PE=1 SV=1 Back     alignment and function description
>sp|P51143|SC6A2_BOVIN Sodium-dependent noradrenaline transporter OS=Bos taurus GN=SLC6A2 PE=2 SV=1 Back     alignment and function description
>sp|P31652|SC6A4_RAT Sodium-dependent serotonin transporter OS=Rattus norvegicus GN=Slc6a4 PE=1 SV=1 Back     alignment and function description
>sp|Q9XT49|SC6A4_BOVIN Sodium-dependent serotonin transporter OS=Bos taurus GN=SLC6A4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query445
91094247 604 PREDICTED: similar to high-affinity sero 0.993 0.731 0.808 0.0
112984160 596 serotonin transporter [Bombyx mori] gi|8 0.993 0.741 0.791 0.0
24415090 587 high-affinity serotonin transporter [Man 0.993 0.752 0.789 0.0
357616265503 high-affinity serotonin transporter [Dan 0.984 0.870 0.785 0.0
195124871 763 GI18339 [Drosophila mojavensis] gi|19391 0.977 0.570 0.785 0.0
195023913 627 GH20902 [Drosophila grimshawi] gi|193901 0.977 0.693 0.789 0.0
195381445 630 GJ20736 [Drosophila virilis] gi|19414425 0.973 0.687 0.791 0.0
194757349 752 GF11257 [Drosophila ananassae] gi|190622 0.977 0.578 0.785 0.0
195436396 634 GK22085 [Drosophila willistoni] gi|19416 0.975 0.684 0.789 0.0
194886320 770 GG19936 [Drosophila erecta] gi|190659776 0.977 0.564 0.780 0.0
>gi|91094247|ref|XP_968717.1| PREDICTED: similar to high-affinity serotonin transporter [Tribolium castaneum] gi|270016267|gb|EFA12713.1| hypothetical protein TcasGA2_TC002347 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/444 (80%), Positives = 400/444 (90%), Gaps = 2/444 (0%)

Query: 3   GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVT--VHVN 60
           G+GYAICL+DIYMGMYYNTIIGWAVYYL ASF++ELPWTSC+N WNT +C PVT  V VN
Sbjct: 136 GIGYAICLIDIYMGMYYNTIIGWAVYYLIASFQAELPWTSCHNYWNTKDCRPVTALVGVN 195

Query: 61  YTSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAV 120
             +SSPAKEFFER VLEQ +SDGL+R+G IK +LALCV AVF+LVYFSLWKGVRS GKAV
Sbjct: 196 SNASSPAKEFFEREVLEQYKSDGLNRMGPIKPALALCVFAVFVLVYFSLWKGVRSTGKAV 255

Query: 121 WVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGF 180
           W+TALAPYVVLIILLCRGVTLPGA EGIRYYLTP+WHKL NS+VWIDAASQIFFSLGPGF
Sbjct: 256 WITALAPYVVLIILLCRGVTLPGAAEGIRYYLTPEWHKLNNSRVWIDAASQIFFSLGPGF 315

Query: 181 GTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEG 240
           GTLLALSSYNKF+NNCYRDA+LTSSINCLTSFLAGFVIFSVLGYMAHVQ+KS+  VGLEG
Sbjct: 316 GTLLALSSYNKFNNNCYRDALLTSSINCLTSFLAGFVIFSVLGYMAHVQHKSIEMVGLEG 375

Query: 241 PGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHR 300
           PGLVFIVYPEAIA MTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYP+ LGRHR
Sbjct: 376 PGLVFIVYPEAIATMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPKALGRHR 435

Query: 301 EIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
           EIFVA ++  +YICALPTTTYGGVYLVN LNV+GPGLAILFVVFVEAAGVCW+YG D F+
Sbjct: 436 EIFVAALLFGIYICALPTTTYGGVYLVNMLNVYGPGLAILFVVFVEAAGVCWLYGTDNFA 495

Query: 361 TDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLT 420
            DIE M+GH+PG++WR+CW YISP FLL+IF+FSLL +E M+  EY YP WS ++G+ LT
Sbjct: 496 RDIEKMIGHKPGIFWRMCWKYISPVFLLSIFIFSLLSHEQMLGTEYEYPEWSFKVGYALT 555

Query: 421 ASSLMCIPSYIVYKLYTTPGPLIK 444
           ASS+MCIP YIVYK   TPG L++
Sbjct: 556 ASSIMCIPLYIVYKFAITPGSLVQ 579

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|112984160|ref|NP_001037436.1| serotonin transporter [Bombyx mori] gi|89954519|gb|ABD83661.1| serotonin transporter [Bombyx mori] Back     alignment and taxonomy information
>gi|24415090|gb|AAN59781.1| high-affinity serotonin transporter [Manduca sexta] Back     alignment and taxonomy information
>gi|357616265|gb|EHJ70104.1| high-affinity serotonin transporter [Danaus plexippus] Back     alignment and taxonomy information
>gi|195124871|ref|XP_002006907.1| GI18339 [Drosophila mojavensis] gi|193911975|gb|EDW10842.1| GI18339 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195023913|ref|XP_001985774.1| GH20902 [Drosophila grimshawi] gi|193901774|gb|EDW00641.1| GH20902 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195381445|ref|XP_002049459.1| GJ20736 [Drosophila virilis] gi|194144256|gb|EDW60652.1| GJ20736 [Drosophila virilis] Back     alignment and taxonomy information
>gi|194757349|ref|XP_001960927.1| GF11257 [Drosophila ananassae] gi|190622225|gb|EDV37749.1| GF11257 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195436396|ref|XP_002066154.1| GK22085 [Drosophila willistoni] gi|194162239|gb|EDW77140.1| GK22085 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|194886320|ref|XP_001976589.1| GG19936 [Drosophila erecta] gi|190659776|gb|EDV56989.1| GG19936 [Drosophila erecta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query445
FB|FBgn0010414622 SerT "Serotonin transporter" [ 0.973 0.696 0.784 2.1e-194
UNIPROTKB|F1NZX8559 LOC427700 "Transporter" [Gallu 0.988 0.787 0.577 1.6e-141
ZFIN|ZDB-GENE-060314-2591 slc6a4b "solute carrier family 0.988 0.744 0.575 4.3e-141
UNIPROTKB|O35899630 SLC6A4 "Sodium-dependent serot 0.988 0.698 0.546 3.6e-137
UNIPROTKB|F1LNR9597 Slc6a2 "Transporter" [Rattus n 0.986 0.735 0.524 2e-136
UNIPROTKB|F1LQW0567 Slc6a2 "Transporter" [Rattus n 0.986 0.774 0.524 2e-136
MGI|MGI:1270850617 Slc6a2 "solute carrier family 0.986 0.711 0.526 3.2e-136
UNIPROTKB|F1NZ43656 SLC6A4 "Transporter" [Gallus g 0.988 0.670 0.539 6.7e-136
UNIPROTKB|F1NZ44670 SLC6A4 "Transporter" [Gallus g 0.988 0.656 0.539 6.7e-136
RGD|621822597 Slc6a2 "solute carrier family 0.986 0.735 0.522 1.1e-135
FB|FBgn0010414 SerT "Serotonin transporter" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1883 (667.9 bits), Expect = 2.1e-194, P = 2.1e-194
 Identities = 342/436 (78%), Positives = 391/436 (89%)

Query:     3 GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYT 62
             GVGYAICL+DIYMGMYYNTIIGWAVYYLFASF S+LPWTSC+N WNT NC  VT   N+T
Sbjct:   155 GVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTENCMQVTSE-NFT 213

Query:    63 --SSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAV 120
               ++SPAKEFFER VLE  + +GLD +G +K +LALCV  VF+LVYFSLWKGVRSAGK V
Sbjct:   214 ELATSPAKEFFERKVLESYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVV 273

Query:   121 WVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGF 180
             WVTALAPYVVLIILL RGV+LPGADEGI+YYLTP+WHKLKNSKVWIDAASQIFFSLGPGF
Sbjct:   274 WVTALAPYVVLIILLVRGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGF 333

Query:   181 GTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEG 240
             GTLLALSSYNKF+NNCYRDA++TSSINCLTSFLAGFVIFSVLGYMA+VQ  S+  VGLEG
Sbjct:   334 GTLLALSSYNKFNNNCYRDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEG 393

Query:   241 PGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHR 300
             PGLVFIVYPEAIA M+GSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPR++GR R
Sbjct:   394 PGLVFIVYPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIGRRR 453

Query:   301 EIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
             E+FV +++ F+++CALPT TYGGV LVNFLNV+GPGLAILFVVFVEAAGV W YGVDRFS
Sbjct:   454 ELFVLLLLAFIFLCALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEAAGVFWFYGVDRFS 513

Query:   361 TDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLT 420
             +D+E MLG +PGL+WR+CWTYISP FLLTIF+FS++GY++M+  EY YP WS ++GW +T
Sbjct:   514 SDVEQMLGSKPGLFWRICWTYISPVFLLTIFIFSIMGYKEMLGEEYYYPDWSYQVGWAVT 573

Query:   421 ASSLMCIPSYIVYKLY 436
              SS++CIP YI+YK +
Sbjct:   574 CSSVLCIPMYIIYKFF 589
GO:0005886 "plasma membrane" evidence=ISS
GO:0005261 "cation channel activity" evidence=IDA
GO:0006837 "serotonin transport" evidence=IDA
GO:0015222 "serotonin transmembrane transporter activity" evidence=NAS;IDA
GO:0015844 "monoamine transport" evidence=IDA
GO:0008504 "monoamine transmembrane transporter activity" evidence=IDA
GO:0005887 "integral to plasma membrane" evidence=NAS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA
GO:0043679 "axon terminus" evidence=IDA
GO:0030424 "axon" evidence=IDA
GO:0051610 "serotonin uptake" evidence=IDA
GO:0006911 "phagocytosis, engulfment" evidence=IMP
UNIPROTKB|F1NZX8 LOC427700 "Transporter" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060314-2 slc6a4b "solute carrier family 6 (neurotransmitter transporter, serotonin), member 4B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O35899 SLC6A4 "Sodium-dependent serotonin transporter" [Cavia porcellus (taxid:10141)] Back     alignment and assigned GO terms
UNIPROTKB|F1LNR9 Slc6a2 "Transporter" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQW0 Slc6a2 "Transporter" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1270850 Slc6a2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZ43 SLC6A4 "Transporter" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZ44 SLC6A4 "Transporter" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|621822 Slc6a2 "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P51143SC6A2_BOVINNo assigned EC number0.51110.98650.7138yesN/A
P51905SC6A4_DROMENo assigned EC number0.78080.97750.6993yesN/A
Q9MYX0SC6A4_MACMUNo assigned EC number0.54620.98420.6952yesN/A
O55192SC6A2_MOUSENo assigned EC number0.52440.98650.7115yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
cd11497539 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen 0.0
cd11513537 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent 0.0
pfam00209506 pfam00209, SNF, Sodium:neurotransmitter symporter 0.0
cd11556552 cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub 0.0
cd11496543 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen 0.0
cd11512560 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n 1e-175
cd11514555 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent 1e-170
cd11500544 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent 1e-154
cd11510542 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent 1e-146
cd11506598 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent 1e-143
cd10324417 cd10324, SLC6sbd, Solute carrier 6 family, neurotr 1e-142
cd11501601 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent 1e-138
cd11507544 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent 1e-136
cd11499606 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent 1e-135
cd10332565 cd10332, SLC6sbd-B0AT-like, System B(0) neutral am 1e-133
cd11509592 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c 1e-132
cd11511541 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent 1e-132
cd11508542 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent 1e-127
cd11498585 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent 1e-122
cd11518576 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent 7e-93
cd11517576 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3 8e-90
cd11515530 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot 2e-88
cd11521589 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm 1e-79
cd11516581 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am 1e-78
cd10334480 cd10334, SLC6sbd_u1, uncharacterized bacterial and 1e-76
cd11502543 cd11502, SLC6sbd_NTT5, Neurotransmitter transporte 1e-63
cd11554406 cd11554, SLC6sbd_u2, uncharacterized eukaryotic so 2e-62
cd11522580 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch 1e-49
COG0733439 COG0733, COG0733, Na+-dependent transporters of th 2e-45
cd10336439 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa 1e-41
cd11522580 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch 4e-28
cd10333500 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and 1e-27
cd06857413 cd06857, SLC5-6-like_sbd, Solute carrier families 2e-06
cd10324417 cd10324, SLC6sbd, Solute carrier 6 family, neurotr 2e-05
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain Back     alignment and domain information 
 Score =  738 bits (1907), Expect = 0.0
 Identities = 301/447 (67%), Positives = 353/447 (78%), Gaps = 7/447 (1%)

Query: 3   GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPV------- 55
           GVGYAIC++  Y+  YYNTII WA+YYLF+SF SELPWTSCNN WNT NCT V       
Sbjct: 82  GVGYAICIIAFYVAFYYNTIIAWALYYLFSSFTSELPWTSCNNPWNTPNCTDVSNRNNSS 141

Query: 56  TVHVNYTSSSPAKEFFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRS 115
           + +  +T  SPA+EFFER VLE Q+S+G+D LG  K  LALC+ AVF++VYFSLWKGV+S
Sbjct: 142 SSNGTWTLHSPAEEFFERKVLELQKSEGIDDLGGPKWQLALCLFAVFIIVYFSLWKGVKS 201

Query: 116 AGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFS 175
           +GK VWVTA  PYVVL ILL RG+TLPGA +GI+YYLTP W KLK+ KVWIDAA+QIFFS
Sbjct: 202 SGKVVWVTATMPYVVLSILLIRGLTLPGASDGIKYYLTPNWSKLKDPKVWIDAATQIFFS 261

Query: 176 LGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVAD 235
           LGPGFG LLALSSYNKF NNCYRDA++TSSINCLTSF +GFVIFSVLGYMAH QN  +  
Sbjct: 262 LGPGFGVLLALSSYNKFHNNCYRDALITSSINCLTSFFSGFVIFSVLGYMAHKQNVDIEV 321

Query: 236 VGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRL 295
           V  EGPGLVFIVYPEAIA + GS FW+IIFFLMLITLGLDSTFGGLEA+IT LCDE+P +
Sbjct: 322 VATEGPGLVFIVYPEAIATLPGSTFWAIIFFLMLITLGLDSTFGGLEAVITGLCDEFPPV 381

Query: 296 LGRHREIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYG 355
           LG+ RE+FV  VV   ++ ALPT TYGG+Y+V  L+ +  G +ILFVVF+EA  V W YG
Sbjct: 382 LGKRRELFVLGVVIICFLLALPTVTYGGIYVVTLLDRYAAGTSILFVVFLEAVAVSWFYG 441

Query: 356 VDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRL 415
           VDRFS DIE MLG RPGLYWR+CW +ISP FLL I +FSL+ YE +   +YVYP WS  +
Sbjct: 442 VDRFSDDIEEMLGFRPGLYWRVCWKFISPIFLLFIVIFSLVSYEPLQYQDYVYPYWSTVV 501

Query: 416 GWTLTASSLMCIPSYIVYKLYTTPGPL 442
           GW +T SS++CIP Y +YKL  TPG  
Sbjct: 502 GWCITCSSIVCIPIYAIYKLIITPGTF 528

This subgroup represents the solute-binding domain of transmembrane transporters that transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: NET which transports norepinephrine, SERT which transports serotonin, and DAT1 which transports dopamine. These transporters may play a role in diseases including depression, anxiety disorders, attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 539
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain Back     alignment and domain information
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family Back     alignment and domain information
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain Back     alignment and domain information
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain Back     alignment and domain information
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain Back     alignment and domain information
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain Back     alignment and domain information
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain Back     alignment and domain information
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain Back     alignment and domain information
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain Back     alignment and domain information
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain Back     alignment and domain information
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain Back     alignment and domain information
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain Back     alignment and domain information
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain Back     alignment and domain information
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain Back     alignment and domain information
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain Back     alignment and domain information
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like; solute binding domain Back     alignment and domain information
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 445
KOG3660|consensus629 100.0
KOG3659|consensus629 100.0
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 100.0
COG0733439 Na+-dependent transporters of the SNF family [Gene 100.0
PRK11375484 allantoin permease; Provisional 94.83
TIGR00837381 araaP aromatic amino acid transport protein. aroma 92.58
TIGR00912359 2A0309 spore germination protein (amino acid perme 92.57
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 91.87
PF03845320 Spore_permease: Spore germination protein; InterPr 91.72
PRK10249458 phenylalanine transporter; Provisional 91.47
COG3949349 Uncharacterized membrane protein [Function unknown 90.26
TIGR00842453 bcct choline/carnitine/betaine transport. properti 89.93
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 89.58
TIGR00911501 2A0308 L-type amino acid transporter. 87.75
TIGR00913478 2A0310 amino acid permease (yeast). 87.44
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 87.22
TIGR00814397 stp serine transporter. The HAAAP family includes 86.47
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 85.35
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 85.09
PRK00701439 manganese transport protein MntH; Reviewed 84.75
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 84.72
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 83.16
COG1457442 CodB Purine-cytosine permease and related proteins 80.05
>KOG3660|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.4e-94  Score=756.67  Aligned_cols=440  Identities=49%  Similarity=0.975  Sum_probs=413.4

Q ss_pred             CcchhhHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCcccccccccc---C-------CCCchHHH
Q psy234            1 MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNY---T-------SSSPAKEF   70 (445)
Q Consensus         1 ~~GiG~~~vl~~~~i~~YY~vi~~W~l~Y~~~s~~~~lpW~~C~~~wn~~~c~~~~~~~~~---~-------~~~~~~~~   70 (445)
                      |||+|+++++++..+++||+++++|+++|+++||++++||++|+|+||+++|.+.+...++   +       ..++..++
T Consensus       113 f~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~wnt~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (629)
T KOG3660|consen  113 FKGVGWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNPWNTEYCLDGTSKQNCANLTKLSNALNFNSPVAEF  192 (629)
T ss_pred             hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCChhcCCccccccccccccccccccchhhhccchhhh
Confidence            6999999999999999999999999999999999999999999999999999875543221   1       12356777


Q ss_pred             HHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccCCcccccce
Q psy234           71 FERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLPGADEGIRY  150 (445)
Q Consensus        71 f~~~vl~~~~s~~~~~~g~~~~~l~~~l~~~w~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~ga~~Gl~~  150 (445)
                      +.+..++....+++++.|+.+|++++|++++|++++++++||+|++||++|+++++||++|++|++|++|||||.+|++|
T Consensus       193 ~~~~~~~~~~~~~~~~~g~~~w~L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~  272 (629)
T KOG3660|consen  193 WENRVLSLSDGSGIEDFGSINWPLALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTLPGAGDGINF  272 (629)
T ss_pred             hhhhhcccccccccccCCCCChHHHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHH
Confidence            77766553212258889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCcccccCchhHHHHHHhHhhhhccccccceeecccccCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHhhhhccC
Q psy234          151 YLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQN  230 (445)
Q Consensus       151 ~f~pd~~~l~~~~vW~~A~~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~~v~~~~~~~silag~~if~~~g~~~~~~~  230 (445)
                      +++|||+||.|+++|.||..|+|||+|+|+|+++++|||||++||+.||+.++++.|+.+|+++|+++|+++||++++++
T Consensus       273 ~l~~~~~kL~~~~vW~dA~~QiffSlsi~~G~li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~  352 (629)
T KOG3660|consen  273 YLTPDWTKLLDPQVWGDAATQIFFSLSIGFGGLIALASYNKFNNNCYRDAILVVLLDTITSLLAGFAIFSILGFLAHEQG  352 (629)
T ss_pred             HHhhhhHhhcChhhHHHHHHhHHHhHHHHHhhhheeeeeeccCCcceeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c-ccccccccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCCCccCCceeehhhhhHH
Q psy234          231 K-SVADVGLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVT  309 (445)
Q Consensus       231 ~-~~~~~~~~G~gL~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~~~~~~~r~~~~~~~~~  309 (445)
                      . +++++..+|++|+|++||+++++||.+++|+.+||+|++++|++|++.++|.+++++.|+||+ ++++|+.+++.+|+
T Consensus       353 v~~~~~v~~~g~~LaFi~YP~a~~~~p~~plWs~LfF~ml~~LG~~s~~~~ve~i~t~i~D~Fp~-~~~~~~~~vl~vcv  431 (629)
T KOG3660|consen  353 VSDIAEVAKSGPGLAFIAYPEALAQMPLSPLWSGLFFFMLLLLGLDSQFAIVETIVTAIVDEFPR-LRNRRWIVVLFVCV  431 (629)
T ss_pred             CcchhhccCCCCchhhhhhHHHHHhCcccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-ccccchhhhHHHHH
Confidence            8 888888999999999999999999999999999999999999999999999999999999994 45567778888999


Q ss_pred             hhhhhccccccccchhHhHhhhhhhhhHHHHHHHHHHHhheeeeeCccchHHHHHhhcC-CCCccccceeeeeehHHHHH
Q psy234          310 FVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLG-HRPGLYWRLCWTYISPFFLL  388 (445)
Q Consensus       310 ~~~l~gl~~~~~~G~~~~~~~~~~~~~~~l~~~~~~e~i~v~w~yg~~~~~~di~~~~g-~~~~~~w~~~~~~v~Pi~l~  388 (445)
                      +.|++|++++|++|.|+++++|.|..+..+++++++|+++++|+||.||+++|+++|.| .++..+|+++|++++|+++.
T Consensus       432 ~~fllGl~~~t~~G~y~~~l~D~y~a~~~~~~~~~~e~~~i~wiYG~~~~~~di~~M~g~~~~~~~~~~~W~f~tP~~~~  511 (629)
T KOG3660|consen  432 VGFLLGLPLVTEGGIYWFQLFDYYAASWSLLFIAIFECFAIAWVYGADRFRDDIHEMIGCGRPSPYWKLCWKFVTPILLL  511 (629)
T ss_pred             HHHHcchheecCcchhHHHHHHHHhchHHHHHHHHHHHHHHhheecccchHhhHHHHhCCCCCCHHHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHhhcccccccC-CccCchhHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q psy234          389 TIFVFSLLGYEDMISG-EYVYPPWSIRLGWTLTASSLMCIPSYIVYKLYTTPGP  441 (445)
Q Consensus       389 ~i~~~~~~~~~~~~~~-~~~yp~w~~~~gw~~~~~~~l~ip~~~i~~~~~~~g~  441 (445)
                      .+++++.+++++.+++ .|.||.|.+.+||++++.|+++||++++++++|++|+
T Consensus       512 ~i~v~s~~~~~p~~y~~~~~yP~w~~~~Gw~~a~~~~~~iP~~ai~~~~~~~~~  565 (629)
T KOG3660|consen  512 GILVFSLVKYYPLKYNKVYVYPPWGDIVGWLVALSPLLVIPLYAIIQILRAKGT  565 (629)
T ss_pred             HHHHHHHHhccCccCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            9999999999998887 7899999999999999999999999999999999997

>KOG3659|consensus Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
3gjc_A513 Crystal Structure Of The E290s Mutant Of Leut With 4e-12
3mpq_A507 I204r1 Mutant Of Leut Length = 507 6e-12
3qs5_A519 Crystal Structure Of Leut Mutant I359q Bound To Sod 6e-12
3f3a_A508 Crystal Structure Of Leut Bound To L-Tryptophan And 7e-12
2qju_A511 Crystal Structure Of An Nss Homolog With Bound Anti 9e-12
3tt1_A519 Crystal Structure Of Leut In The Outward-Open Confo 1e-11
2a65_A519 Crystal Structure Of Leutaa, A Bacterial Homolog Of 1e-11
3gjd_A515 Crystal Structure Of Leut With Bound Og Length = 51 1e-11
3f3d_A517 Crystal Structure Of Leut Bound To L-Methionine And 1e-11
3mpn_A507 F177r1 Mutant Of Leut Length = 507 1e-11
3tu0_A519 Crystal Structure Of T355v, S354a, K288a Leut Mutan 3e-11
3qs6_A519 Crystal Structure Of Leut Mutant F259v,I359q Bound 3e-11
3qs4_A519 Crystal Structure Of Leut Mutant F259v Bound To Sod 6e-11
4fxz_A513 Crystal Structure Of Leut-F253a Bound To L-Leucine 8e-11
3tt3_A519 Crystal Structure Of Leut In The Inward-Open Confor 3e-10
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound Og Length = 513 Back     alignment and structure 
Iteration: 1

 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 147/355 (41%), Gaps = 54/355 (15%)
Query: 70  FFERSVLEQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYV 129
           F   S+L +  S G++R   I +   L ++AVFL++                        
Sbjct: 177 FINVSILIRGISKGIERFAKIAMP-TLFILAVFLVIR----------------------- 212
Query: 130 VLIILLCRGVTLPGADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 189
           V ++    G     A +G+ +  TP + KLK+  VWI A  QIFF+L  GFG ++  +SY
Sbjct: 213 VFLLETPNGT----AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASY 268
Query: 190 NKFDNNCYRDAILTSSINCLTSFLAG--FVIFSVLGYMAHVQNKSVADVGLEGPGLVFIV 247
            + D +     +  +++N   S + G    I + + +       ++A  G    G  FI 
Sbjct: 269 VRKDQDIVLSGLTAATLNEKASVILGGSISIPAAVAFFGVANAVAIAKAGAFNLG--FIT 326
Query: 248 YPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVV 307
            P   +   G  F   ++F +L   GL S+   ++ MI  L DE  +L  +H  ++ A +
Sbjct: 327 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-KLSRKHAVLWTAAI 385
Query: 308 VTFVYICALPTTTYGGVYLVNFLN-------VFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
           V F              +LV FLN        +   + ++F    E     WI+G D+  
Sbjct: 386 VFF------------SAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 433
Query: 361 TDI-ESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIR 414
            +I    +   P +Y+ +   YI+P FL  + V     Y   I  E  +  W  R
Sbjct: 434 EEINRGGIIKVPRIYYYVM-RYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR 487
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut Length = 507 Back     alignment and structure
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound Antidepressant Length = 511 Back     alignment and structure
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation In Complex With Fab Length = 519 Back     alignment and structure
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of Na+/cl--dependent Neurotransmitter Transporters Length = 519 Back     alignment and structure
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og Length = 515 Back     alignment and structure
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut Length = 507 Back     alignment and structure
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In Complex With Alanine And Sodium Length = 519 Back     alignment and structure
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From Lipid Bicelles Length = 513 Back     alignment and structure
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation In Complex With Fab Length = 519 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 2e-56
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519 Back     alignment and structure
 Score =  194 bits (494), Expect = 2e-56
 Identities = 80/431 (18%), Positives = 148/431 (34%), Gaps = 41/431 (9%)

Query: 17  MYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERSVL 76
           +YY  I  W + +        +P    N                    S  + F E    
Sbjct: 106 IYYVYIESWTLGFAIKFLVGLVPEPPPNAT---------------DPDSILRPFKEFLYS 150

Query: 77  EQQRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGVRSA-GKAVWVTALAPYVVLIILL 135
                 G + +    L   +  +    +    L +G+     +   +     +++ + L+
Sbjct: 151 YIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLV 210

Query: 136 CRGVTLP----GADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNK 191
            R   L      A +G+ +  TP + KLK+  VWI A  QIFF+L  GFG ++  +SY +
Sbjct: 211 IRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVR 270

Query: 192 FDNNCYRDAILTSSINCLTSFLAGFVI--FSVLGYMAHVQNKSVADVGLEGPGLVFIVYP 249
            D +     +  +++N     + G  I   + + +       ++A  G     L FI  P
Sbjct: 271 KDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAG--AFNLGFITLP 328

Query: 250 EAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVT 309
              +   G  F   ++F +L   GL S+   ++ MI  L DE    L   R+  V     
Sbjct: 329 AIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDE----LKLSRKHAVLWTAA 384

Query: 310 FVYICALPTTTYGGV-----YLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIE 364
            V+  A              +      +      +  ++        WI+G D+   +I 
Sbjct: 385 IVFFSAHLVMFLNKSLDEMDFWAG--TIGVVFFGLTELII-----FFWIFGADKAWEEIN 437

Query: 365 SMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSL 424
                +    +     YI+P FL  + V     Y   I  E  +  W I   + +     
Sbjct: 438 RGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVW-ITRFYIIGLFLF 496

Query: 425 MCIPSYIVYKL 435
           +    ++  + 
Sbjct: 497 LTFLVFLAERR 507
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query445
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 100.0
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 95.05
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 94.25
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 91.09
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 89.25
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
Probab=100.00  E-value=3.8e-83  Score=666.17  Aligned_cols=396  Identities=20%  Similarity=0.334  Sum_probs=356.7

Q ss_pred             CcchhhHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCCC--CCCCCCCCCCCCccccccccccCCCCchHHHHHHHHhcc
Q psy234            1 MLGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELP--WTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERSVLEQ   78 (445)
Q Consensus         1 ~~GiG~~~vl~~~~i~~YY~vi~~W~l~Y~~~s~~~~lp--W~~C~~~wn~~~c~~~~~~~~~~~~~~~~~~f~~~vl~~   78 (445)
                      +||+|++++++++++++||++++||+++|+++|+++++|  |++|+     + |.+        ..++.++||++ +++.
T Consensus        90 ~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~-----~-~~~--------~~~~~~~~f~~-~l~~  154 (519)
T 2a65_A           90 AKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT-----D-PDS--------ILRPFKEFLYS-YIGV  154 (519)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--C-----C-HHH--------HHHHHHHHHHH-HHTC
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC-----C-ccc--------ccCcHHHHHHH-HHCC
Confidence            479999999999999999999999999999999999999  65432     1 100        01245677765 5663


Q ss_pred             ccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHhhHHHHHHHHHHhhhcccCC----cccccceeee
Q psy234           79 QRSDGLDRLGSIKLSLALCVMAVFLLVYFSLWKGV-RSAGKAVWVTALAPYVVLIILLCRGVTLPG----ADEGIRYYLT  153 (445)
Q Consensus        79 ~~s~~~~~~g~~~~~l~~~l~~~w~iv~~~v~kGI-~~~gKv~~~~~~~p~vll~~l~ir~ltL~g----a~~Gl~~~f~  153 (445)
                        ++++++.|+++|++++|++++|+++++++.||+ |.+||+.+++.++|+++++++++|++||||    |.||++|+++
T Consensus       155 --~~~~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~  232 (519)
T 2a65_A          155 --PKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWT  232 (519)
T ss_dssp             --CSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHS
T ss_pred             --CCCcccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Confidence              677888999999999999999999999999999 568999999999999999999999999999    9999999999


Q ss_pred             cCcccccCchhHHHHHHhHhhhhccccccceeecccccCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHhhhhccCcc-
Q psy234          154 PQWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKS-  232 (445)
Q Consensus       154 pd~~~l~~~~vW~~A~~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~~v~~~~~~~silag~~if~~~g~~~~~~~~~-  232 (445)
                      |||+++.|+++|.+|++|+|||+|+|+|++++||||||+|+|+.|||.++++.|+.+|++||++||+.++|++  ++.+ 
T Consensus       233 Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a--~g~~~  310 (519)
T 2a65_A          233 PDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAF--FGVAN  310 (519)
T ss_dssp             CCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH--HCHHH
T ss_pred             CCHHHhCCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986  3333 


Q ss_pred             cccccccC-CceehhhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCCCccCCceeehhhhhHHhh
Q psy234          233 VADVGLEG-PGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFV  311 (445)
Q Consensus       233 ~~~~~~~G-~gL~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~~~~~~~r~~~~~~~~~~~  311 (445)
                      ++++..+| |||+|+++|+++++||+|++|+++||+++++||+||+++++|++++.++|+++  +  +|+..+.++|++.
T Consensus       311 ~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~~--~--~R~~~~~~v~~~~  386 (519)
T 2a65_A          311 AVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELK--L--SRKHAVLWTAAIV  386 (519)
T ss_dssp             HHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--C--CHHHHHHHHHHHH
T ss_pred             hHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhC--C--cHHHHHHHHHHHH
Confidence            44444578 99999999999999999999999999999999999999999999999999986  3  3444667789999


Q ss_pred             hhhcccccccc-chhHhHhhhhhhhhHHHHHHHHHHHhheeeeeCccchHHHHHhhcCCCCccccceeeeeehHHHHHHH
Q psy234          312 YICALPTTTYG-GVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTI  390 (445)
Q Consensus       312 ~l~gl~~~~~~-G~~~~~~~~~~~~~~~l~~~~~~e~i~v~w~yg~~~~~~di~~~~g~~~~~~w~~~~~~v~Pi~l~~i  390 (445)
                      +++|+|+++++ |   +|++|++..+..+++.+++|+++++|+||.||+++|+++|.|++++++|+++|||++|++++++
T Consensus       387 fllgl~~~~~~~g---~~~~D~~~~~~~l~~~~l~~~i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i  463 (519)
T 2a65_A          387 FFSAHLVMFLNKS---LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVL  463 (519)
T ss_dssp             HHHHHHHHHBTTH---HHHHHHHTTTHHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHcCCCC---cchHHHHHhHHHHHHHHHHHHHhhheeeehhHHHHHHHcccCCchHHHHHHeEEehHHHHHHHH
Confidence            99999999988 7   8999999999999999999999999999999999999999998888999999999999999999


Q ss_pred             HHHHhhcccccccCCccCchhHHHHHHHHHHHHHH
Q psy234          391 FVFSLLGYEDMISGEYVYPPWSIRLGWTLTASSLM  425 (445)
Q Consensus       391 ~~~~~~~~~~~~~~~~~yp~w~~~~gw~~~~~~~l  425 (445)
                      ++.+++++.+..+++|.||.|.   ||.+++.+++
T Consensus       464 ~~~~~~~~~~~~y~~y~~~~~~---Gw~~~~~~~i  495 (519)
T 2a65_A          464 LVVWAREYIPKIMEETHWTVWI---TRFYIIGLFL  495 (519)
T ss_dssp             HHHHHHHTHHHHHHSSCTTHHH---HHHHHHHHHH
T ss_pred             HHHHHHhCcCCCCCCccCccHH---HHHHHHHHHH
Confidence            9999998877777888999885   9999887554
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 445
d2a65a1509 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte 2e-61
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

 Score =  206 bits (524), Expect = 2e-61
 Identities = 83/434 (19%), Positives = 155/434 (35%), Gaps = 21/434 (4%)

Query: 3   GVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYT 62
            +G     + + + +YY  I  W + +        +P    N     +            
Sbjct: 88  ILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSIL---------- 137

Query: 63  SSSPAKEFFERSVLEQQRSDGLDRLGSIK-LSLALCVMAVFLLVYFSLWKGVRSAGKAVW 121
              P KEF    +   +  + + +      +   + +     ++   + KG+    K   
Sbjct: 138 --RPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAM 195

Query: 122 VTALAPYVVLIILLCRGVTLPG-ADEGIRYYLTPQWHKLKNSKVWIDAASQIFFSLGPGF 180
            T     V L+I +    T  G A +G+ +  TP + KLK+  VWI A  QIFF+L  GF
Sbjct: 196 PTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGF 255

Query: 181 GTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADVGLEG 240
           G ++  +SY + D +     +  +++N     + G  I             +VA      
Sbjct: 256 GAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGA 315

Query: 241 PGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHR 300
             L FI  P   +   G  F   ++F +L   GL S+   ++ MI  L DE         
Sbjct: 316 FNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAV 375

Query: 301 EIFVAVVVTFVYICALPTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFS 360
               A+V    ++             ++ ++ +   + ++F    E     WI+G D+  
Sbjct: 376 LWTAAIVFFSAHLVMF------LNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAW 429

Query: 361 TDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLLGYEDMISGEYVYPPWSIRLGWTLT 420
            +I      +    +     YI+P FL  + V     Y   I  E  +  W  R  + + 
Sbjct: 430 EEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITR-FYIIG 488

Query: 421 ASSLMCIPSYIVYK 434
               +    ++  +
Sbjct: 489 LFLFLTFLVFLAER 502

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query445
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 100.0
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=7.5e-71  Score=577.45  Aligned_cols=411  Identities=20%  Similarity=0.296  Sum_probs=338.5

Q ss_pred             cchhhHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccccccccCCCCchHHHHHHHHhccccC
Q psy234            2 LGVGYAICLMDIYMGMYYNTIIGWAVYYLFASFRSELPWTSCNNAWNTANCTPVTVHVNYTSSSPAKEFFERSVLEQQRS   81 (445)
Q Consensus         2 ~GiG~~~vl~~~~i~~YY~vi~~W~l~Y~~~s~~~~lpW~~C~~~wn~~~c~~~~~~~~~~~~~~~~~~f~~~vl~~~~s   81 (445)
                      ||+|++++++++++++||+++++|++.|+++++++++||++|++.++++ |           .++.+||+++...+....
T Consensus        87 ~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s~~~~lp~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~  154 (509)
T d2a65a1          87 KILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDS-I-----------LRPFKEFLYSYIGVPKGD  154 (509)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHH-H-----------HHHHHHHHHHHHTCCSSS
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCcccccCccc-c-----------ccchHHHHHhhhccccCC
Confidence            7999999999999999999999999999999999999999887654322 1           134677877765442222


Q ss_pred             CCCCCcchh-hHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHhhHHHHHHHHHHhhhcccC----CcccccceeeecCc
Q psy234           82 DGLDRLGSI-KLSLALCVMAVFLLVYFSLWKGVRSAGKAVWVTALAPYVVLIILLCRGVTLP----GADEGIRYYLTPQW  156 (445)
Q Consensus        82 ~~~~~~g~~-~~~l~~~l~~~w~iv~~~v~kGI~~~gKv~~~~~~~p~vll~~l~ir~ltL~----ga~~Gl~~~f~pd~  156 (445)
                      ++..+.+.. ...++++++++|.+++.++.||+|+.+|+++.+...|+++   ++++.+++|    |+.+|++|+++|||
T Consensus       155 ~~~~~~~~~~~~~~~~~~~i~~~i~~~gi~kGi~~~~kv~~~~l~~~~~~---l~i~~~~l~~~~gga~~gl~~~~~pd~  231 (509)
T d2a65a1         155 EPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVF---LVIRVFLLETPNGTAADGLNFLWTPDF  231 (509)
T ss_dssp             SCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHH---HHHHHTTCEETTEEHHHHHHHHHSCCT
T ss_pred             CccccchHHHHHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHH---HHHHhhhcccCCCcHHHHhhhccCCCH
Confidence            222222221 2234567888899999999999999999977654444444   445555554    79999999999999


Q ss_pred             ccccCchhHHHHHHhHhhhhccccccceeecccccCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHhhhhccCcccccc
Q psy234          157 HKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFDNNCYRDAILTSSINCLTSFLAGFVIFSVLGYMAHVQNKSVADV  236 (445)
Q Consensus       157 ~~l~~~~vW~~A~~Q~ffSlslG~G~~ity~Sy~~~~~n~~~~a~~v~~~~~~~silag~~if~~~g~~~~~~~~~~~~~  236 (445)
                      +++.|+++|.+|++|+|||+|+|+|.+++||||||+|+|+.||++.++..|+.+|+++|.+++...++.......+.+..
T Consensus       232 ~~L~~~~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~~~n~~rda~~v~~~~~~~si~~~~~~~~~~~~~~~~~~~~~~~~  311 (509)
T d2a65a1         232 EKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIA  311 (509)
T ss_dssp             TSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHhcChHHHHHHHHHHhhhhcccCCceeeehhhccchhhhcccceEEEecccceeeccccchhhhhheeeeccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999887777666555444444444


Q ss_pred             cccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHhhhhcccchhhHHHHhhhcCCCccCCceeehhhhhHHhhhhhcc
Q psy234          237 GLEGPGLVFIVYPEAIAMMTGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRLLGRHREIFVAVVVTFVYICAL  316 (445)
Q Consensus       237 ~~~G~gL~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~lE~iv~~l~d~~~~~~~~~r~~~~~~~~~~~~l~gl  316 (445)
                      ..+||+|.|+++|+++++||+|++|+++||++++++|++|+++++|++++.++|++|+  +| |+...+..|+..++.++
T Consensus       312 ~~~g~~L~Fv~~P~~fs~~~~~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~~~~--~r-~~~~~~~~~~~~~~~~~  388 (509)
T d2a65a1         312 KAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKL--SR-KHAVLWTAAIVFFSAHL  388 (509)
T ss_dssp             HHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--CH-HHHHHHHHHHHHHHHHH
T ss_pred             cccCCCchhhhhHHHhhcCCcchhHHHHHHHHHHHHHHHHHhccccchhHHHHHhcCC--ch-hhhhhheeEEEEhhhhH
Confidence            5689999999999999999999999999999999999999999999999999999973  33 33345566777788888


Q ss_pred             ccccccchhHhHhhhhhhhhHHHHHHHHHHHhheeeeeCccchHHHHHhhcCCCCccccceeeeeehHHHHHHHHHHHhh
Q psy234          317 PTTTYGGVYLVNFLNVFGPGLAILFVVFVEAAGVCWIYGVDRFSTDIESMLGHRPGLYWRLCWTYISPFFLLTIFVFSLL  396 (445)
Q Consensus       317 ~~~~~~G~~~~~~~~~~~~~~~l~~~~~~e~i~v~w~yg~~~~~~di~~~~g~~~~~~w~~~~~~v~Pi~l~~i~~~~~~  396 (445)
                      ++.+++|   ++.+|.+..+..+++.+++|+++++|+||.||+++|+++|.|++++++|+++|||++|++++++++++++
T Consensus       389 ~~~~~~~---~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~r~~~di~~~~~~~~~~~~~~~~~~i~Pi~l~~ili~~~~  465 (509)
T d2a65a1         389 VMFLNKS---LDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAR  465 (509)
T ss_dssp             HHHBTTH---HHHHHHHTTTHHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHhcch---HHHHHHHHHHHHHHHHHHHHHheeeeEecHHHHHHHHHhCCCCCHHHHHHHheeeeeHhhhhheeehhHh
Confidence            8888777   5667888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy234          397 GYEDMISGEYVYPPWSIRLGWTLTASSLMCIPSYIVYK  434 (445)
Q Consensus       397 ~~~~~~~~~~~yp~w~~~~gw~~~~~~~l~ip~~~i~~  434 (445)
                      ++++..+++++||.|.. .+|.+.....+.++.+..+|
T Consensus       466 ~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~i~~~  502 (509)
T d2a65a1         466 EYIPKIMEETHWTVWIT-RFYIIGLFLFLTFLVFLAER  502 (509)
T ss_dssp             HTHHHHHHSSCTTHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccccCCcCCchHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            98887777788999964 34555556666677777765