Psyllid ID: psy2355

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
MLESRLKGDNPDQNGTSVQTDEQQYLHLLDKIIKTIIRYQKTLHHSHTMFNLLPIFSPQGDNPDQNGTSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAKEKGIKVNLKRQPAQPRPAHIVSGRTAPVMLAPIPYEFIA
ccccccccccccccccEEccccccccccccccccEEEEcccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHcccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccccccccEEEEEEEEEccEEEHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccEEEEEccEEEEEEEccEEEccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccEEccccccccccccEEEccccccEEEccccccccc
ccHHHcccccccccccEEEEcccccHHHHHHHHHHEEEccccccccccEEEccccccccccccccccccccHHcHHHHHHHHHHHHHcEEEEcccccEEEEEEEEEEEEEcHHHEccccccccccHHHHHHHHHHHHccccEHHHHHccccccccHHHcHHHHHccccccccccEccccHHHHHHHEcccccccccccccccEcHHHHHHHHHHHcccccccEEEccccccHHHccccccEEEEEEEEEccEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccEccccccccHHHHcHHHHHHHHHHcccccccEEEEEEcccEEccccccccHHEEccccccccEEEEEEEEcccccEEEEEccHHHHHEEccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccEEEccccccEEEccccHHHcc
mlesrlkgdnpdqngtsvqtDEQQYLHLLDKIIKTIIRYQKTlhhshtmfnllpifspqgdnpdqngtsvqtDEQQYLHLLDKIIKTghkksdrtgvgtLSLFGAQmrfdltngtfpllttkRVFWKGVVEELLWFIKGStnakelsdkgvkiwdpnstreyldsiglvdrkegdlgpvygfqwrhygaeykdmftdytDQGIDQLQNIINTIktnpndrriimcawnpidmpkmalppchclaqfyvadgKLSCQLYQrsadmglgvpfniASYSLLTYMIAHVTglqrtsnmtnskgyrrgtrdlfsrpfrrhgtiplSVYMKVYKVgdivdikghgavqkgmpfkdyhgktgrvfnVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAKEKGIKVnlkrqpaqprpahivsgrtapvmlapipyefia
mlesrlkgdnpdqngtsvqtdeqQYLHLLDKIIKTIIRYQKTLHHSHTMFNLLPIFSPQGDNPDQNGTSVQTDEQQYLHLLDKIIktghkksdrtgVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIkgstnakelsdkgvkiwdpnstREYLDsiglvdrkegdlGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINtiktnpndrRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVtglqrtsnmtnskgyrrgtrdlfsrpfrrhgtiplsvYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRvfnvtqhavgvivnkrvrtriipkrinvriehikhskcredflkrvkenelkrkeakekgikvnlkrqpaqprpahivsgrtapvmlaPIPYEFIA
MLESRLKGDNPDQNGTSVQTDEQQYLHLLDKIIKTIIRYQKTLHHSHTMFNLLPIFSPQGDNPDQNGTSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAKEKGIKVNLKRQPAQPRPAHIVSGRTAPVMLAPIPYEFIA
***********************QYLHLLDKIIKTIIRYQKTLHHSHTMFNLLPIF*******************QYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRT********YRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFL*****************************************VMLAPIPY****
****************SVQTDEQQYLHLLDKIIKTIIRYQKTLHHSHTMF**************************YLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFL*********************************IVSGRTAPVMLAPIPYEFIA
******************QTDEQQYLHLLDKIIKTIIRYQKTLHHSHTMFNLLPIFSPQGDNPDQNGTSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAKEKGIKVNL**********HIVSGRTAPVMLAPIPYEFIA
*****LKGDNPDQNGTSVQTDEQQYLHLLDKIIKTIIRYQKTLHHSHTMFNLLPIF**************QTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCREDFLKRVKENELKRKEAKEKGIKVNLKRQPAQPRPAHIVSGRTAPVMLAPIPYEFIA
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MLESRLKGDNPDQNGTSVQTDEQQYLHLLDKIIKTIIRYQKTLHHSHTMFNLLPIFSPQGDNPDQNGTSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKRINVRIEHIKHSKCxxxxxxxxxxxxxxxxxxxxxGIKVNLKRQPAQPRPAHIVSGRTAPVMLAPIPYEFIA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query452 2.2.26 [Sep-21-2011]
P07607307 Thymidylate synthase OS=M yes N/A 0.508 0.749 0.705 3e-97
P45352307 Thymidylate synthase OS=R yes N/A 0.482 0.710 0.735 1e-96
Q2TA32354 Thymidylate synthase OS=B yes N/A 0.475 0.607 0.726 3e-95
P04818313 Thymidylate synthase OS=H yes N/A 0.475 0.686 0.731 1e-94
O81395521 Bifunctional dihydrofolat N/A N/A 0.475 0.412 0.703 4e-91
Q05762519 Bifunctional dihydrofolat yes N/A 0.480 0.418 0.701 4e-90
P06854294 Thymidylate synthase OS=S N/A N/A 0.486 0.748 0.701 6e-90
O76511321 Thymidylate synthase OS=D yes N/A 0.522 0.735 0.644 6e-90
Q2QRX6494 Putative bifunctional dih no N/A 0.477 0.437 0.700 7e-90
P12462290 Thymidylate synthase OS=H N/A N/A 0.473 0.737 0.711 9e-90
>sp|P07607|TYSY_MOUSE Thymidylate synthase OS=Mus musculus GN=Tyms PE=1 SV=1 Back     alignment and function desciption
 Score =  355 bits (912), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 163/231 (70%), Positives = 192/231 (83%), Gaps = 1/231 (0%)

Query: 59  QGDNPDQNGTSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPL 118
           Q D    +  + +  E QYL  ++ I++ G KK DRTG GTLS+FG Q R+ L +  FPL
Sbjct: 9   QSDAQQLSAEAPRHGELQYLRQVEHILRCGFKKEDRTGTGTLSVFGMQARYSLRD-EFPL 67

Query: 119 LTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGP 178
           LTTKRVFWKGV+EELLWFIKGSTNAKELS KGV+IWD N +R++LDS+G   R+EGDLGP
Sbjct: 68  LTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVRIWDANGSRDFLDSLGFSARQEGDLGP 127

Query: 179 VYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALP 238
           VYGFQWRH+GAEYKDM +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALP
Sbjct: 128 VYGFQWRHFGAEYKDMDSDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALP 187

Query: 239 PCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
           PCH L QFYV +G+LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGLQ
Sbjct: 188 PCHALCQFYVVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQ 238
Contributes to the de novo mitochondrial thymidylate biosynthesis pathway.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 5
>sp|P45352|TYSY_RAT Thymidylate synthase OS=Rattus norvegicus GN=Tyms PE=1 SV=1 Back     alignment and function description
>sp|Q2TA32|TYSY_BOVIN Thymidylate synthase OS=Bos taurus GN=TYMS PE=2 SV=1 Back     alignment and function description
>sp|P04818|TYSY_HUMAN Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3 Back     alignment and function description
>sp|O81395|DRTS_MAIZE Bifunctional dihydrofolate reductase-thymidylate synthase OS=Zea mays GN=DRTS PE=2 SV=1 Back     alignment and function description
>sp|Q05762|DRTS1_ARATH Bifunctional dihydrofolate reductase-thymidylate synthase 1 OS=Arabidopsis thaliana GN=THY-1 PE=2 SV=2 Back     alignment and function description
>sp|P06854|TYSY_SHV21 Thymidylate synthase OS=Saimiriine herpesvirus 2 (strain 11) GN=70 PE=3 SV=1 Back     alignment and function description
>sp|O76511|TYSY_DROME Thymidylate synthase OS=Drosophila melanogaster GN=Ts PE=1 SV=2 Back     alignment and function description
>sp|Q2QRX6|DRTS_ORYSJ Putative bifunctional dihydrofolate reductase-thymidylate synthase OS=Oryza sativa subsp. japonica GN=Os12g0446900 PE=3 SV=2 Back     alignment and function description
>sp|P12462|TYSY_HSVAT Thymidylate synthase OS=Herpesvirus ateles GN=TS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
240848723299 thymidylate synthase-like [Acyrthosiphon 0.480 0.725 0.806 1e-104
383859252322 PREDICTED: bifunctional dihydrofolate re 0.491 0.689 0.755 1e-101
240129500289 thymidylate synthase [Litopenaeus vannam 0.480 0.750 0.741 2e-98
432929095320 PREDICTED: thymidylate synthase-like [Or 0.502 0.709 0.723 4e-98
189236060303 PREDICTED: similar to bifunctional dihyd 0.480 0.716 0.760 7e-98
270005647330 hypothetical protein TcasGA2_TC007732 [T 0.484 0.663 0.753 1e-97
66556831305 PREDICTED: bifunctional dihydrofolate re 0.480 0.711 0.741 2e-97
348503456325 PREDICTED: thymidylate synthase-like [Or 0.495 0.689 0.72 5e-97
322788931302 hypothetical protein SINV_05432 [Solenop 0.5 0.748 0.716 6e-97
332373384320 unknown [Dendroctonus ponderosae] 0.495 0.7 0.714 1e-96
>gi|240848723|ref|NP_001155666.1| thymidylate synthase-like [Acyrthosiphon pisum] gi|239790855|dbj|BAH71962.1| ACYPI006453 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 175/217 (80%), Positives = 197/217 (90%)

Query: 73  DEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEE 132
           DEQQYL  + KI++ GHKK DRT VGTLSLFG QMR++L +G FPLLTTKRVFW+GVVEE
Sbjct: 14  DEQQYLDHIKKILEKGHKKMDRTRVGTLSLFGIQMRYNLMDGVFPLLTTKRVFWRGVVEE 73

Query: 133 LLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYK 192
           LLWFIKGSTN+KELS+K VK+WD NSTR YLDSIGL DR+EGDLGPVYGFQWRHYGAEY 
Sbjct: 74  LLWFIKGSTNSKELSEKDVKVWDANSTRSYLDSIGLTDREEGDLGPVYGFQWRHYGAEYV 133

Query: 193 DMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGK 252
           D+ TDY+ +GIDQLQN+INTIKTNP+DRR++M AWNP D+PKMALPPCHCL QF+VADG 
Sbjct: 134 DVHTDYSGKGIDQLQNVINTIKTNPDDRRMLMIAWNPCDVPKMALPPCHCLVQFFVADGY 193

Query: 253 LSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
           LSCQ+YQRSADMGLGVPFNIASYSLLTYMIAHVTGL+
Sbjct: 194 LSCQMYQRSADMGLGVPFNIASYSLLTYMIAHVTGLK 230

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383859252|ref|XP_003705109.1| PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|240129500|gb|ACS44779.1| thymidylate synthase [Litopenaeus vannamei] Back     alignment and taxonomy information
>gi|432929095|ref|XP_004081178.1| PREDICTED: thymidylate synthase-like [Oryzias latipes] Back     alignment and taxonomy information
>gi|189236060|ref|XP_970584.2| PREDICTED: similar to bifunctional dihydrofolate reductase-thymidylate synthase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270005647|gb|EFA02095.1| hypothetical protein TcasGA2_TC007732 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|66556831|ref|XP_624369.1| PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase [Apis mellifera] Back     alignment and taxonomy information
>gi|348503456|ref|XP_003439280.1| PREDICTED: thymidylate synthase-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|322788931|gb|EFZ14449.1| hypothetical protein SINV_05432 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332373384|gb|AEE61833.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
ZFIN|ZDB-GENE-040426-59319 tyms "thymidylate synthase" [D 0.486 0.689 0.710 1.7e-90
MGI|MGI:98878307 Tyms "thymidylate synthase" [M 0.508 0.749 0.705 1.4e-89
RGD|3921307 Tyms "thymidylate synthetase" 0.482 0.710 0.735 4.6e-89
UNIPROTKB|F1N8Y2312 TYMS "Thymidylate synthase" [G 0.515 0.746 0.693 2e-88
UNIPROTKB|F1MY63354 TYMS "Thymidylate synthase" [B 0.475 0.607 0.726 8.6e-88
UNIPROTKB|Q2TA32354 TYMS "Thymidylate synthase" [B 0.475 0.607 0.726 8.6e-88
UNIPROTKB|P04818313 TYMS "Thymidylate synthase" [H 0.475 0.686 0.731 1.8e-87
UNIPROTKB|F1PNL9354 TYMS "Uncharacterized protein" 0.519 0.663 0.669 2.9e-87
UNIPROTKB|F1PU23314 TYMS "Uncharacterized protein" 0.519 0.748 0.669 2.9e-87
TAIR|locus:2042649519 THY-1 "thymidylate synthase 1" 0.480 0.418 0.701 5e-83
ZFIN|ZDB-GENE-040426-59 tyms "thymidylate synthase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 883 (315.9 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
 Identities = 157/221 (71%), Positives = 190/221 (85%)

Query:    69 SVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKG 128
             S+  DE+ YL L++ I++ G KK DRTG G +S+FG Q R+ L +  FPLLTTKRVFWKG
Sbjct:    31 SLFCDERGYLSLVEFILQNGAKKGDRTGTGVISVFGTQARYSLRD-QFPLLTTKRVFWKG 89

Query:   129 VVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYG 188
             ++EELLWFIKGSTNAK+LS+KGV+IWD N +RE+LD  G  DR+EGDLGPVYGFQWRH+G
Sbjct:    90 ILEELLWFIKGSTNAKDLSEKGVRIWDANGSREFLDKNGFTDREEGDLGPVYGFQWRHFG 149

Query:   189 AEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYV 248
             AEYKDM TDY+ +G+DQLQ +I+TIK+NP DRRIIMCAWNP D+P MALPPCH L QFYV
Sbjct:   150 AEYKDMHTDYSGEGVDQLQKVIDTIKSNPEDRRIIMCAWNPKDLPLMALPPCHALCQFYV 209

Query:   249 ADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
             ++G+LSCQLYQRS D+GLGVPFNIASY+LLTYMIAH+TGL+
Sbjct:   210 SNGELSCQLYQRSGDIGLGVPFNIASYALLTYMIAHITGLK 250
GO:0006231 "dTMP biosynthetic process" evidence=IEA;IDA
GO:0004799 "thymidylate synthase activity" evidence=IEA;IDA
GO:0060041 "retina development in camera-type eye" evidence=IMP
GO:0042083 "5,10-methylenetetrahydrofolate-dependent methyltransferase activity" evidence=IDA
GO:0016740 "transferase activity" evidence=IEA
GO:0009165 "nucleotide biosynthetic process" evidence=IEA
GO:0032259 "methylation" evidence=IEA
GO:0008168 "methyltransferase activity" evidence=IEA
MGI|MGI:98878 Tyms "thymidylate synthase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3921 Tyms "thymidylate synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8Y2 TYMS "Thymidylate synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MY63 TYMS "Thymidylate synthase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TA32 TYMS "Thymidylate synthase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P04818 TYMS "Thymidylate synthase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PNL9 TYMS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PU23 TYMS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
TAIR|locus:2042649 THY-1 "thymidylate synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P45352TYSY_RAT2, ., 1, ., 1, ., 4, 50.73510.48230.7100yesN/A
O76511TYSY_DROME2, ., 1, ., 1, ., 4, 50.64430.52210.7352yesN/A
B7I4U0TYSY_ACIB52, ., 1, ., 1, ., 4, 50.58960.45790.7392yesN/A
Q2TA32TYSY_BOVIN2, ., 1, ., 1, ., 4, 50.72680.47560.6073yesN/A
Q6N447TYSY_RHOPA2, ., 1, ., 1, ., 4, 50.58600.42470.7272yesN/A
Q1Q8B2TYSY_PSYCK2, ., 1, ., 1, ., 4, 50.53600.48000.7482yesN/A
P04818TYSY_HUMAN2, ., 1, ., 1, ., 4, 50.73140.47560.6869yesN/A
P07607TYSY_MOUSE2, ., 1, ., 1, ., 4, 50.70560.50880.7491yesN/A
Q9UTI7TYSY_SCHPO2, ., 1, ., 1, ., 4, 50.60410.51320.3712yesN/A
A5EPD3TYSY_BRASB2, ., 1, ., 1, ., 4, 50.58330.42690.7310yesN/A
P0CS12TYSY_CRYNJ2, ., 1, ., 1, ., 4, 50.58400.48890.6971yesN/A
Q05762DRTS1_ARATH2, ., 1, ., 1, ., 4, 50.70180.48000.4181yesN/A
Q3SQ36TYSY_NITWN2, ., 1, ., 1, ., 4, 50.57940.42690.7310yesN/A
Q8SRG2TYS3_ENCCU2, ., 1, ., 1, ., 4, 50.60640.47560.7312yesN/A
P07382DRTS_LEIMA2, ., 1, ., 1, ., 4, 50.54700.60170.5230yesN/A
A1WYP9TYSY_HALHL2, ., 1, ., 1, ., 4, 50.55340.42920.7348yesN/A
A5WHY0TYSY_PSYWF2, ., 1, ., 1, ., 4, 50.57140.46900.7412yesN/A
P06785TYSY_YEAST2, ., 1, ., 1, ., 4, 50.62990.48000.7138yesN/A
Q89G35TYSY_BRAJA2, ., 1, ., 1, ., 4, 50.58130.42920.7348yesN/A
Q134B1TYSY_RHOPS2, ., 1, ., 1, ., 4, 50.58870.42690.7310yesN/A
O62584TYS1_ENCCU2, ., 1, ., 1, ., 4, 50.60640.47560.7312yesN/A
Q6FER7TYSY_ACIAD2, ., 1, ., 1, ., 4, 50.58960.45790.7392yesN/A
A4YZC4TYSY_BRASO2, ., 1, ., 1, ., 4, 50.57870.42690.7310yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.766
4th Layer2.1.1.450.824

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
PTZ00164514 PTZ00164, PTZ00164, bifunctional dihydrofolate red 1e-155
pfam00303262 pfam00303, Thymidylat_synt, Thymidylate synthase 1e-120
PRK01827264 PRK01827, thyA, thymidylate synthase; Reviewed 1e-116
cd00351215 cd00351, TS_Pyrimidine_HMase, Thymidylate synthase 1e-104
TIGR03284295 TIGR03284, thym_sym, thymidylate synthase 1e-102
COG0207268 COG0207, ThyA, Thymidylate synthase [Nucleotide tr 1e-98
PTZ00189160 PTZ00189, PTZ00189, 60S ribosomal protein L21; Pro 6e-81
PLN00190158 PLN00190, PLN00190, 60S ribosomal protein L21; Pro 1e-68
PRK13821323 PRK13821, thyA, thymidylate synthase; Provisional 2e-53
pfam0115799 pfam01157, Ribosomal_L21e, Ribosomal protein L21e 4e-47
COG213998 COG2139, RPL21A, Ribosomal protein L21E [Translati 4e-33
PRK0430698 PRK04306, PRK04306, 50S ribosomal protein L21e; Re 9e-17
TIGR03283199 TIGR03283, thy_syn_methano, thymidylate synthase, 2e-12
PRK00956208 PRK00956, thyA, thymidylate synthase; Provisional 1e-07
>gnl|CDD|240299 PTZ00164, PTZ00164, bifunctional dihydrofolate reductase-thymidylate synthase; Provisional Back     alignment and domain information 
 Score =  449 bits (1158), Expect = e-155
 Identities = 150/216 (69%), Positives = 177/216 (81%), Gaps = 1/216 (0%)

Query: 74  EQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEEL 133
           E QYL L+  IIK G+ K DRTGVGT+S FG QMRFDL   +FPLLTTK+VF +G++EEL
Sbjct: 231 EFQYLDLIADIIKNGNVKEDRTGVGTISKFGYQMRFDLRE-SFPLLTTKKVFLRGIIEEL 289

Query: 134 LWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKD 193
           LWFI+G TN   L DKGV+IW+ N +RE+LDS GL  R+E DLGPVYGFQWRH+GAEYKD
Sbjct: 290 LWFIRGETNGNLLLDKGVRIWEGNGSREFLDSRGLTHREENDLGPVYGFQWRHFGAEYKD 349

Query: 194 MFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYVADGKL 253
           M  DYT QG+DQL+NII TIK NP+DRR+I+ AWNP  + +MALPPCH L+QFYV DGKL
Sbjct: 350 MHDDYTGQGVDQLKNIIETIKNNPDDRRLILTAWNPSALDQMALPPCHLLSQFYVNDGKL 409

Query: 254 SCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
           SC +YQRS DMGLGVPFNIASY+LLT+MIA V GL+
Sbjct: 410 SCMMYQRSCDMGLGVPFNIASYALLTHMIAQVCGLR 445

Length = 514
>gnl|CDD|215846 pfam00303, Thymidylat_synt, Thymidylate synthase Back     alignment and domain information
>gnl|CDD|234984 PRK01827, thyA, thymidylate synthase; Reviewed Back     alignment and domain information
>gnl|CDD|238211 cd00351, TS_Pyrimidine_HMase, Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides Back     alignment and domain information
>gnl|CDD|213790 TIGR03284, thym_sym, thymidylate synthase Back     alignment and domain information
>gnl|CDD|223285 COG0207, ThyA, Thymidylate synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional Back     alignment and domain information
>gnl|CDD|177784 PLN00190, PLN00190, 60S ribosomal protein L21; Provisional Back     alignment and domain information
>gnl|CDD|184347 PRK13821, thyA, thymidylate synthase; Provisional Back     alignment and domain information
>gnl|CDD|110179 pfam01157, Ribosomal_L21e, Ribosomal protein L21e Back     alignment and domain information
>gnl|CDD|225050 COG2139, RPL21A, Ribosomal protein L21E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235275 PRK04306, PRK04306, 50S ribosomal protein L21e; Reviewed Back     alignment and domain information
>gnl|CDD|132326 TIGR03283, thy_syn_methano, thymidylate synthase, methanogen type Back     alignment and domain information
>gnl|CDD|179181 PRK00956, thyA, thymidylate synthase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 452
KOG0673|consensus293 100.0
TIGR03284296 thym_sym thymidylate synthase. Members of this pro 100.0
PRK13821323 thyA thymidylate synthase; Provisional 100.0
PTZ00164514 bifunctional dihydrofolate reductase-thymidylate s 100.0
PRK01827264 thyA thymidylate synthase; Reviewed 100.0
COG0207268 ThyA Thymidylate synthase [Nucleotide transport an 100.0
PTZ00189160 60S ribosomal protein L21; Provisional 100.0
PLN00190158 60S ribosomal protein L21; Provisional 100.0
PF00303269 Thymidylat_synt: Thymidylate synthase; InterPro: I 100.0
KOG1732|consensus160 100.0
cd00351215 TS_Pyrimidine_HMase Thymidylate synthase and pyrim 100.0
PF0115799 Ribosomal_L21e: Ribosomal protein L21e; InterPro: 100.0
PRK0430698 50S ribosomal protein L21e; Reviewed 100.0
PRK00956208 thyA thymidylate synthase; Provisional 100.0
TIGR03283199 thy_syn_methano thymidylate synthase, methanogen t 100.0
COG213998 RPL21A Ribosomal protein L21E [Translation, riboso 100.0
>KOG0673|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.1e-84  Score=619.07  Aligned_cols=244  Identities=64%  Similarity=1.144  Sum_probs=235.3

Q ss_pred             CchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhcC
Q psy2355          71 QTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDKG  150 (452)
Q Consensus        71 ~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~g  150 (452)
                      ++.|.+||+++++||++|+.+.||||+||+|+||.||||+|++. |||||||||+|+.+++|||||++|+||.+.|.++|
T Consensus         7 ~~eE~~YL~lv~~Ii~~G~~r~DrtgtgTlSvFg~qmrf~Lr~t-fPLLTTKrVfwrgV~EElLwfi~G~t~ak~l~~kg   85 (293)
T KOG0673|consen    7 NHEEFQYLNLVKHIISNGARRMDRTGTGTLSVFGCQMRFSLRDT-FPLLTTKRVFWRGVVEELLWFISGSTDAKVLEEKG   85 (293)
T ss_pred             chhHHHHHHHHHHHHhcCCccCCcCCCceeeeeeeeeeeehhcc-ccchhhhhHHHHHHHHHHHHHHhCCCccchhhhcC
Confidence            78899999999999999999999999999999999999999995 99999999999999999999999999999999999


Q ss_pred             CccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCCC
Q psy2355         151 VKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPI  230 (452)
Q Consensus       151 ~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP~  230 (452)
                      ++|||.|++++|||+.|+..+++||+||+||+||||||+.|.+|+++|.++++|||..||++||+||++||+|+++|||.
T Consensus        86 v~IWd~ngsrefLds~G~~~re~GDlgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI~~ik~NP~drRIimsAwNP~  165 (293)
T KOG0673|consen   86 VHIWDGNGSREFLDSVGFTAREEGDLGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVINKIKNNPDDRRIIMSAWNPL  165 (293)
T ss_pred             ceeecCCchHHHHHhcCCCccccCCcccccceeeeecCccccccccccccccHHHHHHHHHHHhcCCccceeeeeccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---cc
Q psy2355         231 DMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---GT  304 (452)
Q Consensus       231 dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~T  304 (452)
                      |+.+|+|||||.++||||.+|+|+|++||||.||.||+||||++|++|++|||++|||+||+|+|+.+.   |..   ..
T Consensus       166 dl~~malpPCH~~~QFyV~~GelScq~YQrS~dmglGVPFnIASYsLLT~miAhv~gl~pgdfiH~lGdahvy~~Hv~al  245 (293)
T KOG0673|consen  166 DLGKMALPPCHTFCQFYVANGELSCQMYQRSGDMGLGVPFNIASYSLLTCMIAHVCGLKPGDFIHVLGDAHVYKDHVDAL  245 (293)
T ss_pred             ccccccCCccceeeEEEecCCeeeehhhhhccccccCccchhHHHHHHHHHHHHHhCCCCCceEEecchhhhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999864   665   44


Q ss_pred             cccccCccccC
Q psy2355         305 RDLFSRPFRRH  315 (452)
Q Consensus       305 R~mfsR~fR~~  315 (452)
                      +.++.|++|.-
T Consensus       246 ~~Ql~r~PrpF  256 (293)
T KOG0673|consen  246 QEQLQRPPRPF  256 (293)
T ss_pred             HHHHhcCCCCC
Confidence            56688888843

>TIGR03284 thym_sym thymidylate synthase Back     alignment and domain information
>PRK13821 thyA thymidylate synthase; Provisional Back     alignment and domain information
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional Back     alignment and domain information
>PRK01827 thyA thymidylate synthase; Reviewed Back     alignment and domain information
>COG0207 ThyA Thymidylate synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>PTZ00189 60S ribosomal protein L21; Provisional Back     alignment and domain information
>PLN00190 60S ribosomal protein L21; Provisional Back     alignment and domain information
>PF00303 Thymidylat_synt: Thymidylate synthase; InterPro: IPR000398 Thymidylate synthase (2 Back     alignment and domain information
>KOG1732|consensus Back     alignment and domain information
>cd00351 TS_Pyrimidine_HMase Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides Back     alignment and domain information
>PF01157 Ribosomal_L21e: Ribosomal protein L21e; InterPro: IPR001147 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK04306 50S ribosomal protein L21e; Reviewed Back     alignment and domain information
>PRK00956 thyA thymidylate synthase; Provisional Back     alignment and domain information
>TIGR03283 thy_syn_methano thymidylate synthase, methanogen type Back     alignment and domain information
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
3ihi_A307 Crystal Structure Of Mouse Thymidylate Synthase Len 2e-98
1rts_A307 Thymidylate Synthase From Rat In Ternary Complex Wi 9e-98
1hzw_A290 Crystal Structure Of Human Thymidylate Synthase Len 4e-96
2rd8_A313 Human Thymidylate Synthase Stabilized In Active Con 7e-96
3ef9_A313 Replacement Of Val3 In Human Thymidylate Synthase A 8e-96
3edw_X313 Replacement Of Val3 In Human Thymidylate Synthase A 8e-96
4gyh_A318 Structure Of Human Thymidylate Synthase At High Sal 8e-96
1ju6_A313 Human Thymidylate Synthase Complex With Dump And Ly 9e-96
3gg5_A313 Replacement Of Val3 In Human Thymidylate Synthase A 9e-96
3eaw_X313 Replacement Of Val3 In Human Thymidylate Synthase A 9e-96
1hvy_A288 Human Thymidylate Synthase Complexed With Dump And 1e-95
3ed7_A295 Replacement Of Val3 In Human Thymidylate Synthase A 2e-95
2rd8_B313 Human Thymidylate Synthase Stabilized In Active Con 1e-94
3n5e_B325 Crystal Structure Of Human Thymidylate Synthase Bou 1e-94
3gh2_X313 Replacement Of Val3 In Human Thymidylate Synthase A 2e-94
1hw4_A355 Structure Of Thymidylate Synthase Suggests Advantag 2e-94
3ehi_X313 Crystal Structure Of Human Thymidyalte Synthase M19 1e-93
1hw3_A313 Structure Of Human Thymidylate Synthase Suggests Ad 2e-93
3n5e_A325 Crystal Structure Of Human Thymidylate Synthase Bou 2e-93
3n5g_A325 Crystal Structure Of Histidine-Tagged Human Thymidy 2e-93
3ebu_A313 Replacement Of Val3 In Human Thymidylate Synthase A 2e-93
4e28_A325 Structure Of Human Thymidylate Synthase In Inactive 3e-93
3egy_X313 Crystal Structure Of Human Thymidyalte Synthase A19 8e-93
2h2q_A521 Crystal Structure Of Trypanosoma Cruzi Dihydrofolat 3e-88
3inv_A521 Trypanosoma Cruzi Dihydrofolate Reductase-Thymidyla 3e-88
1ci7_A297 Ternary Complex Of Thymidylate Synthase From Pneumo 6e-82
3jsu_A608 Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium 9e-81
3qgt_A608 Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed 1e-80
3um5_A608 Double Mutant (A16v+s108t) Plasmodium Falciparum Di 1e-80
1j3i_C328 Wild-Type Plasmodium Falciparum Dihydrofolate Reduc 8e-80
3nrr_A515 Co-Crystal Structure Of Dihydrofolate Reductase-Thy 2e-79
3i3r_A511 X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE 2e-79
3kgb_A294 Crystal Structure Of Thymidylate Synthase 12 FROM E 5e-78
2aaz_B317 Cryptococcus Neoformans Thymidylate Synthase Comple 4e-77
3dl6_A521 Crystal Structure Of The A287fS290G ACTIVE SITE MUT 4e-73
3dl5_A521 Crystal Structure Of The A287f Active Site Mutant O 2e-72
2oip_A519 Crystal Structure Of The S290g Active Site Mutant O 4e-72
3hj3_A521 Crystal Structure Of The Chts-Dhfr F207a Non-Active 1e-71
1qzf_A521 Crystal Structure Of Dhfr-Ts From Cryptosporidium H 1e-71
3ix6_A360 Crystal Structure Of Thymidylate Synthase Thya From 3e-61
3uwl_A315 Crystal Structure Of Enteroccocus Faecalis Thymidyl 1e-60
2zkr_q160 Structure Of A Mammalian Ribosomal 60s Subunit With 7e-60
3uwl_B315 Crystal Structure Of Enteroccocus Faecalis Thymidyl 2e-59
3qj7_A264 Crystal Structure Of The Mycobacterium Tuberculosis 7e-57
3bfi_A264 E. Coli Thymidylate Synthase Y209m Mutant Complexed 1e-55
1tlc_A265 Thymidylate Synthase Complexed With Dgmp And Folate 2e-55
2bbq_A264 Structural Basis For Recognition Of Polyglutamyl Fo 2e-55
2tsc_A264 Structure, Multiple Site Binding, And Segmental Acc 2e-55
1kce_A264 E. Coli Thymidylate Synthase Mutant E58q In Complex 2e-55
2g8m_B264 Escherichia Coli Thymidylate Synthase Y209w In Comp 2e-55
1f4g_A264 Crystal Structure Of E. Coli Thymidylate Synthase C 3e-55
1ev5_A264 Crystal Structure Analysis Of Ala167 Mutant Of Esch 3e-55
2vf0_A264 Crystal Structure Of The Thymidylate Synthase K48q 4e-55
2ftn_A264 E. Coli Thymidylate Synthase Y94f Mutant Length = 2 4e-55
1evg_A264 Crystal Structure Analysis Of Cys167 Mutant Of Esch 4e-55
2vet_A264 Crystal Structure Of The Thymidylate Synthase K48q 4e-55
1zpr_A264 E. Coli Thymidylate Synthase Mutant E58q In Complex 5e-55
1ffl_A264 Crystal Structure Of The Apo-Thymidylate Synthase R 5e-55
1dna_A264 D221(169)n Mutant Does Not Promote Opening Of The C 6e-55
1aiq_A264 Crystal Structure Of Thymidylate Synthase R126e Mut 6e-55
1bq1_A264 E. Coli Thymidylate Synthase Mutant N177a In Comple 1e-54
1jg0_A264 Crystal Structure Of Escherichia Coli Thymidylate S 1e-54
1nce_A264 Crystal Structure Of A Ternary Complex Of E. Coli T 2e-54
3bgx_A264 E. Coli Thymidylate Synthase C146s Mutant Complexed 2e-54
1qqq_A264 Crystal Structure Analysis Of Ser254 Mutant Of Esch 2e-54
1evf_A264 Crystal Structure Analysis Of Cys167 Mutant Of Esch 5e-54
1kzj_A264 Crystal Structure Of Ects W80g/dump/cb3717 Complex 6e-54
2g89_A316 L. Casei Thymidylate Synthase Y261a In Complex With 7e-54
2g8a_A316 Lactobacillus Casei Y261m In Complex With Substrate 7e-54
2g86_A316 L. Casei Thymidylate Synthase Y261f In Complex With 8e-54
1lca_A316 Lactobacillus Casei Thymidylate Synthase Ternary Co 8e-54
1f4d_A264 Crystal Structure Of E. Coli Thymidylate Synthase C 9e-54
1tda_A315 Structures Of Thymidylate Synthase With A C-Termina 9e-54
2g8d_A316 Lactobacillus Casei Thymidylate Synthase Y261w-dump 1e-53
1ev8_A264 Crystal Structure Analysis Of Cys167 Mutant Of Esch 1e-53
1tsy_A316 Thymidylate Synthase R179k Mutant Length = 316 2e-53
1vza_A316 Thymidylate Synthase E60d Mutant Binary Complex Wit 2e-53
1vzb_A316 L. Casei Thymidylate Synthase Mutant E60q Binary Co 2e-53
1njc_A316 Thymidylate Synthase, Mutation, N229d With 2'-Deoxy 2e-53
1jmi_A316 Contributions Of Orientation And Hydrogen Bonding T 3e-53
1tsx_A316 Thymidylate Synthase R179e Mutant Length = 316 3e-53
1bo7_A316 Thymidylate Synthase R179t Mutant Length = 316 4e-53
1bo8_A316 Thymidylate Synthase R178t Mutant Length = 316 4e-53
1tsv_A316 Thymidylate Synthase R179a Mutant Length = 316 4e-53
1jmf_A316 Contributions Of Orientation And Hydrogen Bonding T 4e-53
1jmg_A316 Contributions Of Orientation And Hydrogen Bonding T 4e-53
1bp0_A316 Thymidylate Synthase R23i Mutant Length = 316 6e-53
1jmh_A316 Contributions Of Orientation And Hydrogen Bonding T 8e-53
1nja_A316 Thymidylate Synthase, Mutation, N229c With 2'-deoxy 8e-53
1bpj_A316 Thymidylate Synthase R178t, R179t Double Mutant Len 2e-52
1bp6_A316 Thymidylate Synthase R23i, R179t Double Mutant Leng 4e-52
4dq1_A321 Thymidylate Synthase From Staphylococcus Aureus. Le 1e-51
3izs_U160 Localization Of The Large Subunit Ribosomal Protein 2e-51
1tis_A286 Crystal Structure Of Thymidylate Synthase From T4 P 8e-49
4f2v_A272 Crystal Structure Of De Novo Designed Serine Hydrol 2e-44
3izr_U164 Localization Of The Large Subunit Ribosomal Protein 8e-42
3v8h_A327 Crystal Structure Of Thymidylate Synthase From Burk 3e-36
1bko_A278 Thermostable Thymidylate Synthase A From Bacillus S 3e-31
1b02_A279 Crystal Structure Of Thymidylate Synthase A From Ba 3e-31
1s1i_Q100 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 8e-31
3jyw_Q116 Structure Of The 60s Proteins For Eukaryotic Riboso 3e-30
4a17_P157 T.Thermophila 60s Ribosomal Subunit In Complex With 4e-28
3zf7_U159 High-resolution Cryo-electron Microscopy Structure 2e-27
3j21_R97 Promiscuous Behavior Of Proteins In Archaeal Riboso 3e-04
>pdb|3IHI|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase Length = 307 Back     alignment and structure 
Iteration: 1

 Score =  355 bits (912), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 163/231 (70%), Positives = 192/231 (83%), Gaps = 1/231 (0%)
Query: 59  QGDNPDQNGTSVQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPL 118
           Q D    +  + +  E QYL  ++ I++ G KK DRTG GTLS+FG Q R+ L +  FPL
Sbjct: 9   QSDAQQLSAEAPRHGELQYLRQVEHILRCGFKKEDRTGTGTLSVFGMQARYSLRD-EFPL 67
Query: 119 LTTKRVFWKGVVEELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGP 178
           LTTKRVFWKGV+EELLWFIKGSTNAKELS KGV+IWD N +R++LDS+G   R+EGDLGP
Sbjct: 68  LTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVRIWDANGSRDFLDSLGFSARQEGDLGP 127
Query: 179 VYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALP 238
           VYGFQWRH+GAEYKDM +DY+ QG+DQLQ +I+TIKTNP+DRRIIMCAWNP D+P MALP
Sbjct: 128 VYGFQWRHFGAEYKDMDSDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALP 187
Query: 239 PCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 289
           PCH L QFYV +G+LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGLQ
Sbjct: 188 PCHALCQFYVVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQ 238
>pdb|1RTS|A Chain A, Thymidylate Synthase From Rat In Ternary Complex With Dump And Tomudex Length = 307 Back     alignment and structure
>pdb|1HZW|A Chain A, Crystal Structure Of Human Thymidylate Synthase Length = 290 Back     alignment and structure
>pdb|2RD8|A Chain A, Human Thymidylate Synthase Stabilized In Active Conformation By R163k Mutation: Asymmetry And Reactivity Of Cys195 Length = 313 Back     alignment and structure
>pdb|3EF9|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects Its Kinetic Properties And Intracellular Stability Length = 313 Back     alignment and structure
>pdb|3EDW|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects Its Kinetic Properties And Intracellular Stability Length = 313 Back     alignment and structure
>pdb|4GYH|A Chain A, Structure Of Human Thymidylate Synthase At High Salt Conditions Length = 318 Back     alignment and structure
>pdb|1JU6|A Chain A, Human Thymidylate Synthase Complex With Dump And Ly231514, A Pyrrolo(2,3-D)pyrimidine-Based Antifolate Length = 313 Back     alignment and structure
>pdb|3GG5|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects Its Kinetic Properties And Intracellular Stability Length = 313 Back     alignment and structure
>pdb|3EAW|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects Its Kinetic Properties And Intracellular Stability Length = 313 Back     alignment and structure
>pdb|1HVY|A Chain A, Human Thymidylate Synthase Complexed With Dump And Raltitrexed, An Antifolate Drug, Is In The Closed Conformation Length = 288 Back     alignment and structure
>pdb|3ED7|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects Its Kinetic Properties And Intracellular Stability Length = 295 Back     alignment and structure
>pdb|2RD8|B Chain B, Human Thymidylate Synthase Stabilized In Active Conformation By R163k Mutation: Asymmetry And Reactivity Of Cys195 Length = 313 Back     alignment and structure
>pdb|3N5E|B Chain B, Crystal Structure Of Human Thymidylate Synthase Bound To A Peptide Inhibitor Length = 325 Back     alignment and structure
>pdb|3GH2|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects Its Kinetic Properties And Intracellular Stability Length = 313 Back     alignment and structure
>pdb|1HW4|A Chain A, Structure Of Thymidylate Synthase Suggests Advantages Of Chemotherapy With Noncompetitive Inhibitors Length = 355 Back     alignment and structure
>pdb|3EHI|X Chain X, Crystal Structure Of Human Thymidyalte Synthase M190k With Loop 181- 197 Stabilized In The Inactive Conformation Length = 313 Back     alignment and structure
>pdb|1HW3|A Chain A, Structure Of Human Thymidylate Synthase Suggests Advantages Of Chemotherapy With Noncompetitive Inhibitors Length = 313 Back     alignment and structure
>pdb|3N5E|A Chain A, Crystal Structure Of Human Thymidylate Synthase Bound To A Peptide Inhibitor Length = 325 Back     alignment and structure
>pdb|3N5G|A Chain A, Crystal Structure Of Histidine-Tagged Human Thymidylate Synthase Length = 325 Back     alignment and structure
>pdb|3EBU|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects Its Kinetic Properties And Intracellular Stability Length = 313 Back     alignment and structure
>pdb|4E28|A Chain A, Structure Of Human Thymidylate Synthase In Inactive Conformation With A Novel Non-Peptidic Inhibitor Length = 325 Back     alignment and structure
>pdb|3EGY|X Chain X, Crystal Structure Of Human Thymidyalte Synthase A191k With Loop 181- 197 Stabilized In The Inactive Conformation Length = 313 Back     alignment and structure
>pdb|2H2Q|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate Reductase- Thymidylate Synthase Length = 521 Back     alignment and structure
>pdb|3INV|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate Synthase Complexed With Nadph, Dump And C-448 Antifolate Length = 521 Back     alignment and structure
>pdb|1CI7|A Chain A, Ternary Complex Of Thymidylate Synthase From Pneumocystis Carinii Length = 297 Back     alignment and structure
>pdb|3JSU|A Chain A, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium Falciparum Dihydrofolate Reductase-Thymidylate Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And Dump Length = 608 Back     alignment and structure
>pdb|3QGT|A Chain A, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With Nadph, Dump And Pyrimethamine Length = 608 Back     alignment and structure
>pdb|3UM5|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph, And Dump Length = 608 Back     alignment and structure
>pdb|1J3I|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase- Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210, Nadph, And Dump Length = 328 Back     alignment and structure
>pdb|3NRR|A Chain A, Co-Crystal Structure Of Dihydrofolate Reductase-Thymidylate Synthase From Babesia Bovis With Dump, Raltitrexed And Nadp Length = 515 Back     alignment and structure
>pdb|3I3R|A Chain A, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE SYNTHASE FROM Babesia Bovis At 2.35a Resolution Length = 511 Back     alignment and structure
>pdb|3KGB|A Chain A, Crystal Structure Of Thymidylate Synthase 12 FROM ENCEPHALITOZOON Cuniculi At 2.2 A Resolution Length = 294 Back     alignment and structure
>pdb|3DL6|A Chain A, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF Ts-Dhfr From Cryptosporidium Hominis Length = 521 Back     alignment and structure
>pdb|3DL5|A Chain A, Crystal Structure Of The A287f Active Site Mutant Of Ts- Dhfr From Cryptosporidium Hominis Length = 521 Back     alignment and structure
>pdb|2OIP|A Chain A, Crystal Structure Of The S290g Active Site Mutant Of Ts- Dhfr From Cryptosporidium Hominis Length = 519 Back     alignment and structure
>pdb|3HJ3|A Chain A, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site Mut Length = 521 Back     alignment and structure
>pdb|1QZF|A Chain A, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis Length = 521 Back     alignment and structure
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From Brucella Melitensis Length = 360 Back     alignment and structure
>pdb|3UWL|A Chain A, Crystal Structure Of Enteroccocus Faecalis Thymidylate Synthase (efts) In Complex With 5-formyl Tetrahydrofolate Length = 315 Back     alignment and structure
>pdb|2ZKR|QQ Chain q, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 160 Back     alignment and structure
>pdb|3UWL|B Chain B, Crystal Structure Of Enteroccocus Faecalis Thymidylate Synthase (efts) In Complex With 5-formyl Tetrahydrofolate Length = 315 Back     alignment and structure
>pdb|3QJ7|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Thymidylate Synthase (Thya) Bound To Dump Length = 264 Back     alignment and structure
>pdb|3BFI|A Chain A, E. Coli Thymidylate Synthase Y209m Mutant Complexed With 5-nitro-dump Length = 264 Back     alignment and structure
>pdb|1TLC|A Chain A, Thymidylate Synthase Complexed With Dgmp And Folate Analog 1843u89 Length = 265 Back     alignment and structure
>pdb|2BBQ|A Chain A, Structural Basis For Recognition Of Polyglutamyl Folates By Thymidylate Synthase Length = 264 Back     alignment and structure
>pdb|2TSC|A Chain A, Structure, Multiple Site Binding, And Segmental Accomodation In Thymidylate Synthase On Binding DUMP AND An Anti-Folate Length = 264 Back     alignment and structure
>pdb|1KCE|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump) Length = 264 Back     alignment and structure
>pdb|1F4G|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase Complexed With Sp- 876 Length = 264 Back     alignment and structure
>pdb|1EV5|A Chain A, Crystal Structure Analysis Of Ala167 Mutant Of Escherichia Coli Length = 264 Back     alignment and structure
>pdb|2VF0|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q Complexed With 5no2dump And Bw1843u89 Length = 264 Back     alignment and structure
>pdb|2FTN|A Chain A, E. Coli Thymidylate Synthase Y94f Mutant Length = 264 Back     alignment and structure
>pdb|1EVG|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia Coli With Unmodified Catalytic Cysteine Length = 264 Back     alignment and structure
>pdb|2VET|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q Complexed With Dump Length = 264 Back     alignment and structure
>pdb|1ZPR|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump) Length = 264 Back     alignment and structure
>pdb|1FFL|A Chain A, Crystal Structure Of The Apo-Thymidylate Synthase R166q Mutant Length = 264 Back     alignment and structure
>pdb|1DNA|A Chain A, D221(169)n Mutant Does Not Promote Opening Of The Cofactor Imidazolidine Ring Length = 264 Back     alignment and structure
>pdb|1AIQ|A Chain A, Crystal Structure Of Thymidylate Synthase R126e Mutant Length = 264 Back     alignment and structure
>pdb|1BQ1|A Chain A, E. Coli Thymidylate Synthase Mutant N177a In Complex With Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump) Length = 264 Back     alignment and structure
>pdb|1JG0|A Chain A, Crystal Structure Of Escherichia Coli Thymidylate Synthase Complexed With 2'-Deoxyuridine-5'-Monophosphate And N,O-Didansyl-L-Tyrosine Length = 264 Back     alignment and structure
>pdb|1NCE|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli Thymidylate Synthase D169c With Dump And The Antifolate Cb3717 Length = 264 Back     alignment and structure
>pdb|3BGX|A Chain A, E. Coli Thymidylate Synthase C146s Mutant Complexed With Dtmp And Mtf Length = 264 Back     alignment and structure
>pdb|1QQQ|A Chain A, Crystal Structure Analysis Of Ser254 Mutant Of Escherichia Coli Thymidylate Synthase Length = 264 Back     alignment and structure
>pdb|1EVF|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia Coli Length = 264 Back     alignment and structure
>pdb|1KZJ|A Chain A, Crystal Structure Of Ects W80g/dump/cb3717 Complex Length = 264 Back     alignment and structure
>pdb|2G89|A Chain A, L. Casei Thymidylate Synthase Y261a In Complex With Substrate, Dump Length = 316 Back     alignment and structure
>pdb|2G8A|A Chain A, Lactobacillus Casei Y261m In Complex With Substrate, Dump Length = 316 Back     alignment and structure
>pdb|2G86|A Chain A, L. Casei Thymidylate Synthase Y261f In Complex With Substrate, Dump Length = 316 Back     alignment and structure
>pdb|1LCA|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex With Dump And Cb3717 Length = 316 Back     alignment and structure
>pdb|1F4D|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase C146s, L143c Covalently Modified At C143 With N-[tosyl-D-Prolinyl]amino- Ethanethiol Length = 264 Back     alignment and structure
>pdb|1TDA|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal Deletion: Role Of The C-Terminus In Alignment Of DUMP AND CH2H4FOLATE Length = 315 Back     alignment and structure
>pdb|2G8D|A Chain A, Lactobacillus Casei Thymidylate Synthase Y261w-dump Complex Length = 316 Back     alignment and structure
>pdb|1EV8|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia Coli Length = 264 Back     alignment and structure
>pdb|1TSY|A Chain A, Thymidylate Synthase R179k Mutant Length = 316 Back     alignment and structure
>pdb|1VZA|A Chain A, Thymidylate Synthase E60d Mutant Binary Complex With 2'- Deoxyuridine 5'-Monophosphate (Dump) Length = 316 Back     alignment and structure
>pdb|1VZB|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Binary Complex With Dump Length = 316 Back     alignment and structure
>pdb|1NJC|A Chain A, Thymidylate Synthase, Mutation, N229d With 2'-Deoxycytidine 5'- Monophosphate (Dcmp) Length = 316 Back     alignment and structure
>pdb|1JMI|A Chain A, Contributions Of Orientation And Hydrogen Bonding To Catalysis In Asn- 229 Mutants Of Thymidylate Synthase Length = 316 Back     alignment and structure
>pdb|1TSX|A Chain A, Thymidylate Synthase R179e Mutant Length = 316 Back     alignment and structure
>pdb|1BO7|A Chain A, Thymidylate Synthase R179t Mutant Length = 316 Back     alignment and structure
>pdb|1BO8|A Chain A, Thymidylate Synthase R178t Mutant Length = 316 Back     alignment and structure
>pdb|1TSV|A Chain A, Thymidylate Synthase R179a Mutant Length = 316 Back     alignment and structure
>pdb|1JMF|A Chain A, Contributions Of Orientation And Hydrogen Bonding To Catalysis In Asn- 229 Mutants Of Thymidylate Synthase Length = 316 Back     alignment and structure
>pdb|1JMG|A Chain A, Contributions Of Orientation And Hydrogen Bonding To Catalysis In Asn- 229 Mutants Of Thymidylate Synthase Length = 316 Back     alignment and structure
>pdb|1BP0|A Chain A, Thymidylate Synthase R23i Mutant Length = 316 Back     alignment and structure
>pdb|1JMH|A Chain A, Contributions Of Orientation And Hydrogen Bonding To Catalysis In Asn- 229 Mutants Of Thymidylate Synthase Length = 316 Back     alignment and structure
>pdb|1NJA|A Chain A, Thymidylate Synthase, Mutation, N229c With 2'-deoxycytidine 5'- Monophosphate (dcmp) Length = 316 Back     alignment and structure
>pdb|1BPJ|A Chain A, Thymidylate Synthase R178t, R179t Double Mutant Length = 316 Back     alignment and structure
>pdb|1BP6|A Chain A, Thymidylate Synthase R23i, R179t Double Mutant Length = 316 Back     alignment and structure
>pdb|4DQ1|A Chain A, Thymidylate Synthase From Staphylococcus Aureus. Length = 321 Back     alignment and structure
>pdb|3IZS|U Chain U, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 160 Back     alignment and structure
>pdb|1TIS|A Chain A, Crystal Structure Of Thymidylate Synthase From T4 Phage Length = 286 Back     alignment and structure
>pdb|4F2V|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase, Northeast Structural Genomics Consortium (Nesg) Target Or165 Length = 272 Back     alignment and structure
>pdb|3IZR|U Chain U, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 164 Back     alignment and structure
>pdb|3V8H|A Chain A, Crystal Structure Of Thymidylate Synthase From Burkholderia Thailandensis Length = 327 Back     alignment and structure
>pdb|1BKO|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis Length = 278 Back     alignment and structure
>pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Synthase A From Bacillus Subtilis Length = 279 Back     alignment and structure
>pdb|1S1I|Q Chain Q, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 100 Back     alignment and structure
>pdb|3JYW|Q Chain Q, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 116 Back     alignment and structure
>pdb|4A17|P Chain P, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 157 Back     alignment and structure
>pdb|3ZF7|U Chain U, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 159 Back     alignment and structure
>pdb|3J21|R Chain R, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 97 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
2aaz_A317 TS, tsase, thymidylate synthase; methyl transferas 1e-160
1hw4_A355 TS, thymidylate synthase; methyltransferase, trans 1e-160
1j3k_C328 Bifunctional dihydrofolate reductase-thymidylate s 1e-160
3ed7_A295 Tsase, TS, thymidylate synthase; transferase, meth 1e-159
1f28_A297 Thymidylate synthase; beta-sheet, protein-inhibito 1e-158
3irm_A521 Bifunctional dihydrofolate reductase-thymidylate; 1e-158
3kgb_A294 Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI 1e-158
3nrr_A515 Dihydrofolate reductase-thymidylate synthase; stru 1e-158
3qg2_A608 Bifunctional dihydrofolate reductase-thymidylate; 1e-156
3hj3_A521 Chain A, crystal structure of DHFR; TS, enzyme, cr 1e-155
3v8h_A327 TS, tsase, thymidylate synthase; ssgcid, structura 1e-139
4dq1_A321 TS, tsase, thymidylate synthase; structural genomi 1e-137
2g8o_A264 TS, tsase, thymidylate synthase; methyltransferase 1e-136
3ix6_A360 TS, tsase, thymidylate synthase; niaid, ssgcid, se 1e-135
3ik0_A316 TS, tsase, thymidylate synthase; transferase, nucl 1e-135
3qj7_A264 TS, tsase, thymidylate synthase; thymidilate synth 1e-135
1tis_A286 Thymidylate synthase; transferase(methyltransferas 1e-135
1bkp_A278 Thymidylate synthase A; methyltransferase, DTMP sy 1e-127
1b5e_A246 Protein (deoxycytidylate hydroxymethylase); DNTP s 1e-112
2zkr_q160 60S ribosomal protein L21; protein-RNA complex, 60 8e-80
3izc_U160 60S ribosomal protein RPL21 (L21E); eukaryotic rib 3e-78
4a17_P157 RPL21, 60S ribosomal protein L21; eukaryotic ribos 8e-76
3iz5_U164 60S ribosomal protein L21 (L21E); eukaryotic ribos 1e-75
3jyw_Q116 60S ribosomal protein L21(A); eukaryotic ribosome, 3e-55
1vq8_Q96 50S ribosomal protein L21E; ribosome 50S, protein- 2e-47
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A* Length = 355 Back     alignment and structure
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C* Length = 328 Back     alignment and structure
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* 1juj_A* 3egy_X* ... Length = 295 Back     alignment and structure
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A* Length = 297 Back     alignment and structure
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A* Length = 521 Back     alignment and structure
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} Length = 294 Back     alignment and structure
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A* Length = 515 Back     alignment and structure
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 3qgt_A* Length = 608 Back     alignment and structure
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A* Length = 521 Back     alignment and structure
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis} Length = 327 Back     alignment and structure
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus} Length = 321 Back     alignment and structure
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ... Length = 264 Back     alignment and structure
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis} Length = 360 Back     alignment and structure
>3ik0_A TS, tsase, thymidylate synthase; transferase, nucleotide synthase, methyltransferase, nucleot biosynthesis; HET: 7C1 UMP; 2.10A {Lactobacillus casei} PDB: 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 1tdb_A* 1tda_A* ... Length = 316 Back     alignment and structure
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} Length = 264 Back     alignment and structure
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1 Length = 286 Back     alignment and structure
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A* Length = 278 Back     alignment and structure
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A* Length = 246 Back     alignment and structure
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 160 Back     alignment and structure
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P Length = 157 Back     alignment and structure
>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q Length = 116 Back     alignment and structure
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ... Length = 96 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query452
3ed7_A295 Tsase, TS, thymidylate synthase; transferase, meth 100.0
3kgb_A294 Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI 100.0
2aaz_A317 TS, tsase, thymidylate synthase; methyl transferas 100.0
1f28_A297 Thymidylate synthase; beta-sheet, protein-inhibito 100.0
1j3k_C328 Bifunctional dihydrofolate reductase-thymidylate s 100.0
1hw4_A355 TS, thymidylate synthase; methyltransferase, trans 100.0
4dq1_A321 TS, tsase, thymidylate synthase; structural genomi 100.0
3irm_A521 Bifunctional dihydrofolate reductase-thymidylate; 100.0
3nrr_A515 Dihydrofolate reductase-thymidylate synthase; stru 100.0
3hj3_A521 Chain A, crystal structure of DHFR; TS, enzyme, cr 100.0
3v8h_A327 TS, tsase, thymidylate synthase; ssgcid, structura 100.0
3uwl_A315 TS, tsase, thymidylate synthase; methyltransferase 100.0
3qj7_A264 TS, tsase, thymidylate synthase; thymidilate synth 100.0
3qg2_A608 Bifunctional dihydrofolate reductase-thymidylate; 100.0
1tis_A286 Thymidylate synthase; transferase(methyltransferas 100.0
4a17_P157 RPL21, 60S ribosomal protein L21; eukaryotic ribos 100.0
3izc_U160 60S ribosomal protein RPL21 (L21E); eukaryotic rib 100.0
3iz5_U164 60S ribosomal protein L21 (L21E); eukaryotic ribos 100.0
2g8o_A264 TS, tsase, thymidylate synthase; methyltransferase 100.0
3ix6_A360 TS, tsase, thymidylate synthase; niaid, ssgcid, se 100.0
1bkp_A278 Thymidylate synthase A; methyltransferase, DTMP sy 100.0
2zkr_q160 60S ribosomal protein L21; protein-RNA complex, 60 100.0
1b5e_A246 Protein (deoxycytidylate hydroxymethylase); DNTP s 100.0
3jyw_Q116 60S ribosomal protein L21(A); eukaryotic ribosome, 100.0
3j21_R97 50S ribosomal protein L21E; archaea, archaeal, KIN 100.0
1vq8_Q96 50S ribosomal protein L21E; ribosome 50S, protein- 100.0
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ... Back     alignment and structure
Probab=100.00  E-value=1.7e-85  Score=650.13  Aligned_cols=265  Identities=62%  Similarity=1.064  Sum_probs=242.1

Q ss_pred             CCchHHHHHHHHHHHHhcCcccCCCCCceeEEecceeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhc
Q psy2355          70 VQTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFGAQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDK  149 (452)
Q Consensus        70 ~~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~  149 (452)
                      .++.|+||++||++||++|+.++||||+||+|+||+||||||++| ||+|||||++||++++||||||+|+||+++|+++
T Consensus         8 ~~~~~~qYldl~~~Il~~G~~~~dRTGtgT~svfg~q~rfdL~~~-fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~   86 (295)
T 3ed7_A            8 PPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDE-FPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSK   86 (295)
T ss_dssp             CCCTHHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSC-CCCCTTTTCCHHHHHHHHHHHHTTCCBGGGGCC-
T ss_pred             CCChHHHHHHHHHHHHHcCcCCCCCCCCceEEEcCceEEEecccC-cceeecccccHHHHHHHHHHHHhCCccHHHHHHc
Confidence            579999999999999999999999999999999999999999998 9999999999999999999999999999999999


Q ss_pred             CCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCC
Q psy2355         150 GVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP  229 (452)
Q Consensus       150 g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP  229 (452)
                      |++|||+|++++|+++.|++.+++|||||+||+|||+|++.|.+|.++|+|+++|||++||++||+||+|||+|+++|||
T Consensus        87 gv~IWd~~~~~~~~~~~g~~~~e~GdlGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~vI~~Lk~nP~sRR~ivsaWnp  166 (295)
T 3ed7_A           87 GVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNP  166 (295)
T ss_dssp             ----CCSCSSCCGGGGSCHHHHHTTBCCSCTHHHHHHBTCCCCCSSSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCG
T ss_pred             CCcccccchhhhhhhcccCCccCCCcCccchhhhhhccCCccccccccCCccchhHHHHHHHHHhcCCCCceeEEEecCH
Confidence            99999999999999999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCceeeEEEEEeCCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---ccc---c
Q psy2355         230 IDMPKMALPPCHCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---YRR---G  303 (452)
Q Consensus       230 ~dl~~~~lpPC~~~~QF~VrdGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---YRr---~  303 (452)
                      +|+++|+|||||+++||+|++|+|+|++||||+|+++|+||||++||+|++|||++||+++|+|+|++.+   |.+   .
T Consensus       167 ~dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nH~e~  246 (295)
T 3ed7_A          167 RDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEP  246 (295)
T ss_dssp             GGTTTSSSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHH
T ss_pred             hHhhcCCCCCceEEEEEEEeCCEEEEEEEeehhhhHHhhhhhHHHHHHHHHHHHHHhCCeeeEEEEEEEEEEecHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999864   765   6


Q ss_pred             ccccccCccccCCCCCcc---hhhhhccCCCEEEE
Q psy2355         304 TRDLFSRPFRRHGTIPLS---VYMKVYKVGDIVDI  335 (452)
Q Consensus       304 TR~mfsR~fR~~g~~pl~---~~~~~yk~Gd~VdI  335 (452)
                      .+.+++|.+|+....-|.   +-+-.|+..|+.-+
T Consensus       247 ~~~qL~R~p~~~P~l~i~~~~~~i~df~~~Df~l~  281 (295)
T 3ed7_A          247 LKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIE  281 (295)
T ss_dssp             HHHHTTSCCCCCCEEEECSCCCSGGGCCGGGEEEE
T ss_pred             HHHHhcCCCCCCCEEEECCCCCChhcCCHhHEEEE
Confidence            777899998854322221   34455666776544
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1 Back     alignment and structure
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A* Back     alignment and structure
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C* Back     alignment and structure
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A* Back     alignment and structure
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus} Back     alignment and structure
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A* Back     alignment and structure
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A* Back     alignment and structure
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A* Back     alignment and structure
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis} Back     alignment and structure
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ... Back     alignment and structure
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1 Back     alignment and structure
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A* Back     alignment and structure
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1 Back     alignment and structure
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P Back     alignment and structure
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ... Back     alignment and structure
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis} Back     alignment and structure
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A* Back     alignment and structure
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A* Back     alignment and structure
>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q Back     alignment and structure
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 452
d1f28a_295 d.117.1.1 (A:) Thymidylate synthase {Pneumocystis 2e-73
d1seja2289 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrof 6e-71
d1hvya_288 d.117.1.1 (A:) Thymidylate synthase {Human (Homo s 6e-70
d1j3kc_326 d.117.1.1 (C:) Bifunctional enzyme dihydrofolate r 6e-68
d1tswa_316 d.117.1.1 (A:) Thymidylate synthase {Lactobacillus 9e-68
d2g8oa1264 d.117.1.1 (A:1-264) Thymidylate synthase {Escheric 3e-58
d1tisa_286 d.117.1.1 (A:) Thymidylate synthase {Bacteriophage 5e-55
d1b5ea_241 d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophag 1e-54
d1vqoq195 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeo 3e-42
d1bkpa_278 d.117.1.1 (A:) Thymidylate synthase {Bacillus subt 5e-42
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii [TaxId: 4754]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Thymidylate synthase/dCMP hydroxymethylase
superfamily: Thymidylate synthase/dCMP hydroxymethylase
family: Thymidylate synthase/dCMP hydroxymethylase
domain: Thymidylate synthase
species: Pneumocystis carinii [TaxId: 4754]

 Score =  230 bits (588), Expect = 2e-73
 Identities = 142/226 (62%), Positives = 171/226 (75%), Gaps = 7/226 (3%)

Query: 72  TDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFG-AQMRFDLTNGTFPLLTTKRVFWKGVV 130
            +EQQYL+L+  II  G  + DRTG GTLS+F  + ++F L N TFPLLTTKRVF +GV+
Sbjct: 2   AEEQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVI 61

Query: 131 EELLWFIKGSTNAKELSDKGVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAE 190
           EELLWFI+G T++ +L +K + IWD N +REYLDSIGL  R+EGDLGP+YGFQWRH+GAE
Sbjct: 62  EELLWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAE 121

Query: 191 YKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNPIDMPKMALPPCHCLAQFYV-- 248
           Y D  T+Y  QG+DQL NII  I+T+P DRR+I+ AWNP D+ KMALPPCH   QFYV  
Sbjct: 122 YIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHI 181

Query: 249 ----ADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQR 290
                  +LSCQLYQRS DMGLGVPFNIASY+LLT MIAHV  L  
Sbjct: 182 PSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDP 227
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain {Cryptosporidium hominis [TaxId: 237895]} Length = 289 Back     information, alignment and structure
>d1hvya_ d.117.1.1 (A:) Thymidylate synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Back     information, alignment and structure
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 326 Back     information, alignment and structure
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei [TaxId: 1582]} Length = 316 Back     information, alignment and structure
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli [TaxId: 562]} Length = 264 Back     information, alignment and structure
>d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4 [TaxId: 10665]} Length = 286 Back     information, alignment and structure
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4 [TaxId: 10665]} Length = 241 Back     information, alignment and structure
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 95 Back     information, alignment and structure
>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis [TaxId: 1423]} Length = 278 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query452
d1f28a_295 Thymidylate synthase {Pneumocystis carinii [TaxId: 100.0
d1j3kc_326 Bifunctional enzyme dihydrofolate reductase-thymid 100.0
d1seja2289 Bifunctional enzyme dihydrofolate reductase-thymid 100.0
d1hvya_288 Thymidylate synthase {Human (Homo sapiens) [TaxId: 100.0
d1tswa_316 Thymidylate synthase {Lactobacillus casei [TaxId: 100.0
d2g8oa1264 Thymidylate synthase {Escherichia coli [TaxId: 562 100.0
d1tisa_286 Thymidylate synthase {Bacteriophage T4 [TaxId: 106 100.0
d1bkpa_278 Thymidylate synthase {Bacillus subtilis [TaxId: 14 100.0
d1b5ea_241 dCMP hydroxymethylase {Bacteriophage T4 [TaxId: 10 100.0
d1vqoq195 Ribosomal proteins L21e {Archaeon Haloarcula maris 100.0
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii [TaxId: 4754]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thymidylate synthase/dCMP hydroxymethylase
superfamily: Thymidylate synthase/dCMP hydroxymethylase
family: Thymidylate synthase/dCMP hydroxymethylase
domain: Thymidylate synthase
species: Pneumocystis carinii [TaxId: 4754]

Probab=100.00  E-value=3.9e-80  Score=611.53  Aligned_cols=265  Identities=56%  Similarity=0.989  Sum_probs=243.4

Q ss_pred             CchHHHHHHHHHHHHhcCcccCCCCCceeEEecc-eeEEEeCCCCCcccccccccchHHHHHHHHHHHhCCCChhhhhhc
Q psy2355          71 QTDEQQYLHLLDKIIKTGHKKSDRTGVGTLSLFG-AQMRFDLTNGTFPLLTTKRVFWKGVVEELLWFIKGSTNAKELSDK  149 (452)
Q Consensus        71 ~~~e~~Yl~ll~~IL~~G~~~~dRTG~gT~sifg-~~~rfDl~~g~fPllTtKkv~~k~~i~ELLWfL~Gstdv~~L~~~  149 (452)
                      |..|+||++||++||++|+.+.||||+||+|+|| .+|||||+++.||+|||||++||+++.||||||+|+||++.|++.
T Consensus         1 n~~e~qYl~ll~~Il~~G~~k~dRTG~gt~s~Fg~~~lrfdL~~~gFPlLTTKkv~~k~vi~ELLWfl~G~tn~~~L~~~   80 (295)
T d1f28a_           1 NAEEQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEELLWFIRGETDSLKLREK   80 (295)
T ss_dssp             CHHHHHHHHHHHHHHHHCEEEECTTSSEEEEEESCCCEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTT
T ss_pred             CchHHHHHHHHHHHHHhCCCcCCCCCCeeEEEecccceEEEcCCCCcceeeechhhHHHHHHHHHHHHhccchHHHHhhh
Confidence            4679999999999999999999999999999999 689999985339999999999999999999999999999999999


Q ss_pred             CCccccCCchhhhhhhcCcccCCCCCccccccccccccccccccccccCCCcchhHHHHHHHHHhcCCCCcceEEEeeCC
Q psy2355         150 GVKIWDPNSTREYLDSIGLVDRKEGDLGPVYGFQWRHYGAEYKDMFTDYTDQGIDQLQNIINTIKTNPNDRRIIMCAWNP  229 (452)
Q Consensus       150 g~~iWd~n~~~~~l~~~g~~~~~~GdlG~~YG~qwR~~g~~~~~~~~~y~~~~~DQl~~vI~~Lk~nP~SRR~Iis~WnP  229 (452)
                      ||+|||+|++++|+++.|+.+.++||+||+||+|||+|++.|.+|..+|.++++|||++||++||+||+|||+|+++|||
T Consensus        81 ~v~iWd~~~~~~~~~~~~~~~~~~gdlGp~YG~qwr~~~~~~~~~~~~~~~~g~DQl~~vi~~lk~nP~sRR~iis~Wnp  160 (295)
T d1f28a_          81 NIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNP  160 (295)
T ss_dssp             TCCTTHHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCT
T ss_pred             hccccchhhhhhhhhhccccccccCCcccccchhhhhcCCccccccccCCCcCcHHHHHHHHhhhcCCCccceEEEeccH
Confidence            99999999999999999988889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCceeeEEEEEe------CCEEEEEEEeecCccCCcccchHHHHHHHHHHHHHHhCCceeeecccccc---c
Q psy2355         230 IDMPKMALPPCHCLAQFYVA------DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKG---Y  300 (452)
Q Consensus       230 ~dl~~~~lpPC~~~~QF~Vr------dGkL~l~v~qRSnD~~lGlPfNi~~yalL~~mIA~~~Gl~~G~~mHnSkG---Y  300 (452)
                      .++++|+|||||+.+||+|+      +|+|+|++||||+|+|||+||||++||+|++|||++||++||+|+|+.+.   |
T Consensus       161 ~~l~~~~LpPCh~~~qf~V~~~~~~~~~~L~~~~~QRS~D~~LG~pfNiasyalL~~~iA~~~gl~~g~~~~~~gd~HIY  240 (295)
T d1f28a_         161 ADLEKMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIY  240 (295)
T ss_dssp             TTGGGSSSCCSEEEEEEEECCCSTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEE
T ss_pred             hHhccccccccceeeEEEecccCCCCcceEEEEEecchhhhhhccchhHHHHHHHHHHHHHHhCcccceEEEEecceehH
Confidence            99999999999999999995      68999999999999999999999999999999999999999999999764   6


Q ss_pred             cc---cccccccCccccCCCCCcc---hhhhhccCCCEEEE
Q psy2355         301 RR---GTRDLFSRPFRRHGTIPLS---VYMKVYKVGDIVDI  335 (452)
Q Consensus       301 Rr---~TR~mfsR~fR~~g~~pl~---~~~~~yk~Gd~VdI  335 (452)
                      .+   ....+++|.+++...+-+.   .-+..|+..|+.-+
T Consensus       241 ~nH~e~v~eqL~R~P~~~P~L~i~~~~~~i~d~~~~Df~L~  281 (295)
T d1f28a_         241 KDHIEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQ  281 (295)
T ss_dssp             HHHHHHHHTGGGSCCCCCCEEEECSCCCSGGGCCGGGEEEE
T ss_pred             HhHHHHHHHHhcCCCCCCCEEEeCCCCCchhcCchhheEEE
Confidence            65   7788899988865433231   23566777776543
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain {Cryptosporidium hominis [TaxId: 237895]} Back     information, alignment and structure
>d1hvya_ d.117.1.1 (A:) Thymidylate synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure