Psyllid ID: psy2379
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | 2.2.26 [Sep-21-2011] | |||||||
| P0ABI8 | 663 | Ubiquinol oxidase subunit | N/A | N/A | 0.994 | 0.877 | 0.651 | 0.0 | |
| P0ABI9 | 663 | Ubiquinol oxidase subunit | yes | N/A | 0.994 | 0.877 | 0.651 | 0.0 | |
| P0ABJ0 | 663 | Ubiquinol oxidase subunit | N/A | N/A | 0.994 | 0.877 | 0.651 | 0.0 | |
| Q9I426 | 658 | Ubiquinol oxidase subunit | yes | N/A | 0.998 | 0.887 | 0.618 | 0.0 | |
| P57543 | 662 | Ubiquinol oxidase subunit | yes | N/A | 0.993 | 0.877 | 0.645 | 0.0 | |
| Q9WWR2 | 672 | Ubiquinol oxidase subunit | yes | N/A | 0.998 | 0.869 | 0.603 | 0.0 | |
| Q8K994 | 659 | Ubiquinol oxidase subunit | yes | N/A | 0.998 | 0.886 | 0.657 | 0.0 | |
| P98009 | 664 | Ubiquinol oxidase subunit | N/A | N/A | 0.996 | 0.878 | 0.607 | 0.0 | |
| P98057 | 666 | Probable cytochrome c oxi | no | N/A | 0.989 | 0.869 | 0.590 | 0.0 | |
| Q89AA4 | 659 | Ubiquinol oxidase subunit | yes | N/A | 0.965 | 0.857 | 0.64 | 0.0 |
| >sp|P0ABI8|CYOB_ECOLI Ubiquinol oxidase subunit 1 OS=Escherichia coli (strain K12) GN=cyoB PE=1 SV=1 | Back alignment and function desciption |
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Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/583 (65%), Positives = 467/583 (80%), Gaps = 1/583 (0%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
ML RGF DA+MMR QQA++ G+LPP HY+QIFTAHGVIMIFFVAMP V G++N +V
Sbjct: 68 MLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVV 127
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFPFLNNLSFW T G ILV +SL +GEFA TGWL YPPLSGI SPGVGV
Sbjct: 128 PLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGV 187
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DY+IWSLQ++GIGT L+GIN TI+KMRAPGM + MP+FTW +LC N+LI+A+FP+LT
Sbjct: 188 DYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILT 247
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
+ L TLDRY+GTHFFTND+GGN+MMY+NLIW WGHPEVYIL+LPVFG+FSE+ +TFS
Sbjct: 248 VTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSR 307
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFGY+S+V+ATV IT+LS+IVWLHHFFTMG+GANVNAFFGITTMII+IPTG KIFNWL
Sbjct: 308 KRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWL 367
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FTMY+GRI F +LWTIGF++TF +GGM GV+LAVP A+F+LHNSLFL+AHFHNVIIGG
Sbjct: 368 FTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGG 427
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+FG +G+ YW+PKAFG+KL WGK +FWFW+IGF+VAFMPLY LGFMG+TRR+S
Sbjct: 428 VVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQI 487
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
D IAA G +LIA+GIL +IQ+ VS R R D+TGDPW GRTLEW+TSSPP
Sbjct: 488 DPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPP 547
Query: 481 PVYNFAFIPLIHQSDSWWYMKKNNFKFPK-DKFQDILMPKNTNIGILISIFSLIMGFALV 539
P YNFA +P +H+ D++W MK+ + K D +++I MPKN+ GI+I+ FS I GFA++
Sbjct: 548 PFYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMI 607
Query: 540 WHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKKR 582
WH+W L I+ F +I I +F+ +YY+ EI +E +
Sbjct: 608 WHIWWLAIVGFAGMIITWIVKSFDEDVDYYVPVAEIEKLENQH 650
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Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain of E.coli that predominates when cells are grown at high aeration. This ubiquinol oxidase shows proton pump activity across the membrane in addition to the electron transfer. Escherichia coli (strain K12) (taxid: 83333) EC: 1EC: .EC: 1EC: 0EC: .EC: 3EC: .EC: - |
| >sp|P0ABI9|CYOB_ECOL6 Ubiquinol oxidase subunit 1 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cyoB PE=3 SV=1 | Back alignment and function description |
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| >sp|P0ABJ0|CYOB_ECO57 Ubiquinol oxidase subunit 1 OS=Escherichia coli O157:H7 GN=cyoB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9I426|CYOB_PSEAE Ubiquinol oxidase subunit 1 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=cyoB PE=3 SV=1 | Back alignment and function description |
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| >sp|P57543|CYOB_BUCAI Ubiquinol oxidase subunit 1 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=cyoB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9WWR2|CYOB_PSEPU Ubiquinol oxidase subunit 1 OS=Pseudomonas putida GN=cyoB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8K994|CYOB_BUCAP Ubiquinol oxidase subunit 1 OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=cyoB PE=3 SV=1 | Back alignment and function description |
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| >sp|P98009|QOX1_ACEAC Ubiquinol oxidase subunit 1 OS=Acetobacter aceti GN=cyaA PE=1 SV=1 | Back alignment and function description |
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| >sp|P98057|COX14_BRAJA Probable cytochrome c oxidase subunit 1 OS=Bradyrhizobium japonicum (strain USDA 110) GN=blr2715 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q89AA4|CYOB_BUCBP Ubiquinol oxidase subunit 1 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=cyoB PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | ||||||
| 421485557 | 667 | cytochrome ubiquinol oxidase subunit I [ | 1.0 | 0.877 | 0.767 | 0.0 | |
| 423013820 | 667 | cytochrome ubiquinol oxidase subunit I [ | 1.0 | 0.877 | 0.760 | 0.0 | |
| 311108524 | 667 | cytochrome o ubiquinol oxidase subunit I | 1.0 | 0.877 | 0.765 | 0.0 | |
| 359800079 | 667 | cytochrome ubiquinol oxidase subunit I [ | 1.0 | 0.877 | 0.767 | 0.0 | |
| 422321224 | 667 | cytochrome ubiquinol oxidase subunit I [ | 1.0 | 0.877 | 0.758 | 0.0 | |
| 407801805 | 667 | cytochrome o ubiquinol oxidase subunit I | 1.0 | 0.877 | 0.758 | 0.0 | |
| 124266933 | 668 | cytochrome-c oxidase [Methylibium petrol | 1.0 | 0.875 | 0.765 | 0.0 | |
| 293607335 | 667 | cytochrome o ubiquinol oxidase subunit I | 1.0 | 0.877 | 0.762 | 0.0 | |
| 374371718 | 667 | cytochrome o ubiquinol oxidase subunit I | 1.0 | 0.877 | 0.767 | 0.0 | |
| 421747862 | 667 | cytochrome o ubiquinol oxidase subunit I | 1.0 | 0.877 | 0.750 | 0.0 |
| >gi|421485557|ref|ZP_15933113.1| cytochrome ubiquinol oxidase subunit I [Achromobacter piechaudii HLE] gi|400196107|gb|EJO29087.1| cytochrome ubiquinol oxidase subunit I [Achromobacter piechaudii HLE] | Back alignment and taxonomy information |
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Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/585 (76%), Positives = 522/585 (89%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
ML RGF DA+MMRLQQA++FG S GYLPP HY+QIFTAHGVIMIFFVAMPLVTG++N+IV
Sbjct: 78 MLLRGFADAIMMRLQQAVAFGDSTGYLPPHHYDQIFTAHGVIMIFFVAMPLVTGLMNYIV 137
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFPFLNN SFWMT+GG +LVM+SLF+GEFA TGWL YPPLSGI QSP VGV
Sbjct: 138 PLQIGARDVAFPFLNNFSFWMTTGGVVLVMMSLFVGEFARTGWLAYPPLSGIMQSPDVGV 197
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DYYIW+LQIAG+GTLLSG+N++ TI+KMRAPGM +M MPIFTWTALCTN+LIVAAFPVLT
Sbjct: 198 DYYIWALQIAGVGTLLSGVNLLVTIVKMRAPGMTMMRMPIFTWTALCTNVLIVAAFPVLT 257
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
+VL L ++DRY+GT+FFT D GGN MMYVNLIWIWGHPEVYIL+LP FGIFSEVVSTF S
Sbjct: 258 AVLALLSMDRYVGTNFFTADFGGNAMMYVNLIWIWGHPEVYILILPAFGIFSEVVSTFCS 317
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFGY+SMVYATVVIT+LSY+VWLHHFFTMGSGA+VN+FFGITTMIISIPTGAKIFNWL
Sbjct: 318 KRLFGYASMVYATVVITVLSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNWL 377
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FTMYRGRIRFEVP+LWT+GFM+TFVIGGM GV+LAVP A+F LHNSLFL+AHFHNVIIGG
Sbjct: 378 FTMYRGRIRFEVPMLWTMGFMVTFVIGGMTGVLLAVPPADFALHNSLFLIAHFHNVIIGG 437
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
VLFGLM+GI YWFPKAFGYKL+PFWGKCSFWFWL+GFYVAFMPLY+LG MGVTRR++HFE
Sbjct: 438 VLFGLMAGITYWFPKAFGYKLDPFWGKCSFWFWLVGFYVAFMPLYVLGLMGVTRRVNHFE 497
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
D+SLQIWFQ+AAFG LLIA GI SFIIQL+VSYR+R L D TGDPW+GRTLEWSTSSPP
Sbjct: 498 DMSLQIWFQVAAFGALLIACGIASFIIQLVVSYRRRDQLRDNTGDPWDGRTLEWSTSSPP 557
Query: 481 PVYNFAFIPLIHQSDSWWYMKKNNFKFPKDKFQDILMPKNTNIGILISIFSLIMGFALVW 540
P YNFAF P +H D+WW MK++ ++ P+ F I MPKNT G++++ S++MGFAL+W
Sbjct: 558 PNYNFAFTPRVHDLDAWWQMKQHGYQRPQQGFIPIHMPKNTWAGVVLAAISVVMGFALIW 617
Query: 541 HMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKKRIRL 585
HMW L ++SF+ +++ I +TFNYKR+YY+ ++E+ E R RL
Sbjct: 618 HMWPLAVLSFVALILVSIVHTFNYKRDYYVPADEVVREEATRTRL 662
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Source: Achromobacter piechaudii HLE Species: Achromobacter piechaudii Genus: Achromobacter Family: Alcaligenaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|423013820|ref|ZP_17004541.1| cytochrome ubiquinol oxidase subunit I [Achromobacter xylosoxidans AXX-A] gi|338783314|gb|EGP47682.1| cytochrome ubiquinol oxidase subunit I [Achromobacter xylosoxidans AXX-A] | Back alignment and taxonomy information |
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| >gi|311108524|ref|YP_003981377.1| cytochrome o ubiquinol oxidase subunit I 2 [Achromobacter xylosoxidans A8] gi|310763213|gb|ADP18662.1| cytochrome o ubiquinol oxidase, subunit I 2 [Achromobacter xylosoxidans A8] | Back alignment and taxonomy information |
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| >gi|359800079|ref|ZP_09302630.1| cytochrome ubiquinol oxidase subunit I [Achromobacter arsenitoxydans SY8] gi|359361877|gb|EHK63623.1| cytochrome ubiquinol oxidase subunit I [Achromobacter arsenitoxydans SY8] | Back alignment and taxonomy information |
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| >gi|422321224|ref|ZP_16402273.1| cytochrome ubiquinol oxidase subunit I [Achromobacter xylosoxidans C54] gi|317403928|gb|EFV84397.1| cytochrome ubiquinol oxidase subunit I [Achromobacter xylosoxidans C54] | Back alignment and taxonomy information |
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| >gi|407801805|ref|ZP_11148648.1| cytochrome o ubiquinol oxidase subunit I 2 [Alcanivorax sp. W11-5] gi|407024122|gb|EKE35866.1| cytochrome o ubiquinol oxidase subunit I 2 [Alcanivorax sp. W11-5] | Back alignment and taxonomy information |
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| >gi|124266933|ref|YP_001020937.1| cytochrome-c oxidase [Methylibium petroleiphilum PM1] gi|124259708|gb|ABM94702.1| Cytochrome-c oxidase [Methylibium petroleiphilum PM1] | Back alignment and taxonomy information |
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| >gi|293607335|ref|ZP_06689674.1| cytochrome o ubiquinol oxidase subunit I [Achromobacter piechaudii ATCC 43553] gi|292814179|gb|EFF73321.1| cytochrome o ubiquinol oxidase subunit I [Achromobacter piechaudii ATCC 43553] | Back alignment and taxonomy information |
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| >gi|374371718|ref|ZP_09629650.1| cytochrome o ubiquinol oxidase subunit I 2 [Cupriavidus basilensis OR16] gi|373096745|gb|EHP37934.1| cytochrome o ubiquinol oxidase subunit I 2 [Cupriavidus basilensis OR16] | Back alignment and taxonomy information |
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| >gi|421747862|ref|ZP_16185527.1| cytochrome o ubiquinol oxidase subunit I 2 [Cupriavidus necator HPC(L)] gi|409773475|gb|EKN55267.1| cytochrome o ubiquinol oxidase subunit I 2 [Cupriavidus necator HPC(L)] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | ||||||
| UNIPROTKB|P0ABI8 | 663 | cyoB [Escherichia coli K-12 (t | 0.993 | 0.876 | 0.639 | 5.9e-215 | |
| TIGR_CMR|CBU_1039 | 668 | CBU_1039 "cytochrome o ubiquin | 0.989 | 0.866 | 0.601 | 2.6e-198 | |
| TIGR_CMR|BA_0702 | 644 | BA_0702 "quinol oxidase, subun | 0.974 | 0.885 | 0.508 | 6.8e-159 | |
| UNIPROTKB|P34956 | 649 | qoxB "Quinol oxidase subunit 1 | 0.982 | 0.885 | 0.488 | 1.4e-149 | |
| TIGR_CMR|BA_4153 | 620 | BA_4153 "cytochrome c oxidase, | 0.897 | 0.846 | 0.468 | 1.7e-128 | |
| UNIPROTKB|P63852 | 573 | ctaD "Probable cytochrome c ox | 0.822 | 0.839 | 0.432 | 1.3e-109 | |
| UNIPROTKB|Q0C3D2 | 562 | HNE_1039 "Cytochrome c oxidase | 0.784 | 0.816 | 0.434 | 3.9e-108 | |
| TIGR_CMR|NSE_0622 | 519 | NSE_0622 "cytochrome c oxidase | 0.774 | 0.872 | 0.418 | 5.3e-104 | |
| UNIPROTKB|Q2GJ18 | 518 | ctaD "Cytochrome c oxidase, su | 0.776 | 0.876 | 0.418 | 2.3e-103 | |
| TIGR_CMR|APH_1085 | 518 | APH_1085 "cytochrome c oxidase | 0.776 | 0.876 | 0.418 | 2.3e-103 |
| UNIPROTKB|P0ABI8 cyoB [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 2077 (736.2 bits), Expect = 5.9e-215, P = 5.9e-215
Identities = 372/582 (63%), Positives = 454/582 (78%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
ML RGF DA+MMR QQA++ G+LPP HY+QIFTAHGVIMIFFVAMP V G++N +V
Sbjct: 68 MLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVV 127
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFPFLNNLSFW T G ILV +SL +GEFA TGWL YPPLSGI SPGVGV
Sbjct: 128 PLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGV 187
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DY+IWSLQ++GIGT L+GIN TI+KMRAPGM + MP+FTW +LC N+LI+A+FP+LT
Sbjct: 188 DYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILT 247
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
+ L TLDRY+GTHFFTND+GGN+MMY+NLIW WGHPEVYIL+LPVFG+FSE+ +TFS
Sbjct: 248 VTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSR 307
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFGY+S+V+ATV IT+LS+IVWLHHFFTMG+GANVNAFFGITTMII+IPTG KIFNWL
Sbjct: 308 KRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWL 367
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FTMY+GRI F +LWTIGF++TF +GGM GV+LAVP A+F+LHNSLFL+AHFHNVIIGG
Sbjct: 368 FTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGG 427
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+FG +G+ YW+PKAFG+KL WGK +FWFW+IGF+VAFMPLY LGFMG+TRR+S
Sbjct: 428 VVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQI 487
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
D IAA G +LIA+GIL +IQ+ VS R R D+TGDPW GRTLEW+TSSPP
Sbjct: 488 DPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPP 547
Query: 481 PVYNFAFIPLIHQSDSWWYMXXXXXXXXX-XXXQDILMPKNTNIGILISIFSLIMGFALV 539
P YNFA +P +H+ D++W M ++I MPKN+ GI+I+ FS I GFA++
Sbjct: 548 PFYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMI 607
Query: 540 WHMWXXXXXXXXXXXXXXXYNTFNYKRNYYISSEEITCIEKK 581
WH+W +F+ +YY+ EI +E +
Sbjct: 608 WHIWWLAIVGFAGMIITWIVKSFDEDVDYYVPVAEIEKLENQ 649
|
|
| TIGR_CMR|CBU_1039 CBU_1039 "cytochrome o ubiquinol oxidase, subunit I" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_0702 BA_0702 "quinol oxidase, subunit I" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P34956 qoxB "Quinol oxidase subunit 1" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_4153 BA_4153 "cytochrome c oxidase, subunit I" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P63852 ctaD "Probable cytochrome c oxidase subunit 1" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q0C3D2 HNE_1039 "Cytochrome c oxidase, subunit I" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
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| TIGR_CMR|NSE_0622 NSE_0622 "cytochrome c oxidase, subunit I" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q2GJ18 ctaD "Cytochrome c oxidase, subunit I" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
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| TIGR_CMR|APH_1085 APH_1085 "cytochrome c oxidase, subunit I" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q04440 | COX1_BACPE | 1, ., 9, ., 3, ., 1 | 0.4068 | 0.9623 | 0.9008 | yes | N/A |
| Q8FMT1 | COX1_COREF | 1, ., 9, ., 3, ., 1 | 0.4105 | 0.8273 | 0.8344 | yes | N/A |
| Q4L564 | QOX1_STAHJ | 1, ., 1, 0, ., 3, ., - | 0.4573 | 0.9829 | 0.8685 | yes | N/A |
| P98057 | COX14_BRAJA | 1, ., 9, ., 3, ., 1 | 0.5907 | 0.9897 | 0.8693 | no | N/A |
| P34956 | QOX1_BACSU | 1, ., 1, 0, ., 3, ., - | 0.5 | 0.9829 | 0.8859 | yes | N/A |
| Q5HH24 | QOX1_STAAC | 1, ., 1, 0, ., 3, ., - | 0.4574 | 0.9794 | 0.8655 | yes | N/A |
| Q9I426 | CYOB_PSEAE | 1, ., 1, 0, ., 3, ., - | 0.6188 | 0.9982 | 0.8875 | yes | N/A |
| Q9WWR2 | CYOB_PSEPU | 1, ., 1, 0, ., 3, ., - | 0.6034 | 0.9982 | 0.8690 | yes | N/A |
| P63852 | COX1_MYCTU | 1, ., 9, ., 3, ., 1 | 0.4253 | 0.8170 | 0.8342 | yes | N/A |
| P63853 | COX1_MYCBO | 1, ., 9, ., 3, ., 1 | 0.4253 | 0.8170 | 0.8342 | yes | N/A |
| P57543 | CYOB_BUCAI | 1, ., 1, 0, ., 3, ., - | 0.6455 | 0.9931 | 0.8776 | yes | N/A |
| P0ABI8 | CYOB_ECOLI | 1, ., 1, 0, ., 3, ., - | 0.6518 | 0.9948 | 0.8778 | N/A | N/A |
| P0ABI9 | CYOB_ECOL6 | 1, ., 1, 0, ., 3, ., - | 0.6518 | 0.9948 | 0.8778 | yes | N/A |
| Q828X4 | COX1B_STRAW | 1, ., 9, ., 3, ., 1 | 0.4212 | 0.7863 | 0.8170 | yes | N/A |
| Q49WI3 | QOX1_STAS1 | 1, ., 1, 0, ., 3, ., - | 0.4573 | 0.9829 | 0.8685 | yes | N/A |
| Q2YX15 | QOX1_STAAB | 1, ., 1, 0, ., 3, ., - | 0.4574 | 0.9794 | 0.8655 | yes | N/A |
| Q5HQB0 | QOX1_STAEQ | 1, ., 1, 0, ., 3, ., - | 0.4453 | 0.9829 | 0.8685 | yes | N/A |
| Q79VD7 | COX1_CORGL | 1, ., 9, ., 3, ., 1 | 0.4065 | 0.8273 | 0.8287 | yes | N/A |
| Q6NFM3 | COX1_CORDI | 1, ., 9, ., 3, ., 1 | 0.4158 | 0.8256 | 0.8563 | yes | N/A |
| Q1RI42 | COX1_RICBR | 1, ., 9, ., 3, ., 1 | 0.4323 | 0.8205 | 0.9022 | yes | N/A |
| Q8K994 | CYOB_BUCAP | 1, ., 1, 0, ., 3, ., - | 0.6575 | 0.9982 | 0.8861 | yes | N/A |
| Q9CBQ5 | COX1_MYCLE | 1, ., 9, ., 3, ., 1 | 0.4274 | 0.8170 | 0.8327 | yes | N/A |
| Q89AA4 | CYOB_BUCBP | 1, ., 1, 0, ., 3, ., - | 0.64 | 0.9658 | 0.8573 | yes | N/A |
| Q99V37 | QOX1_STAAM | 1, ., 1, 0, ., 3, ., - | 0.4574 | 0.9794 | 0.8655 | yes | N/A |
| Q92I67 | COX1_RICCN | 1, ., 9, ., 3, ., 1 | 0.4271 | 0.8188 | 0.9003 | yes | N/A |
| Q9K451 | COX1B_STRCO | 1, ., 9, ., 3, ., 1 | 0.4394 | 0.7846 | 0.8010 | yes | N/A |
| P98009 | QOX1_ACEAC | 1, ., 1, 0, ., 3, ., - | 0.6071 | 0.9965 | 0.8780 | N/A | N/A |
| O54069 | COX1_RICPR | 1, ., 9, ., 3, ., 1 | 0.4200 | 0.8136 | 0.8913 | yes | N/A |
| Q6GAF3 | QOX1_STAAS | 1, ., 1, 0, ., 3, ., - | 0.4574 | 0.9794 | 0.8655 | yes | N/A |
| Q7A182 | QOX1_STAAW | 1, ., 1, 0, ., 3, ., - | 0.4574 | 0.9794 | 0.8655 | yes | N/A |
| Q5YRP8 | COX1A_NOCFA | 1, ., 9, ., 3, ., 1 | 0.4253 | 0.8170 | 0.8227 | yes | N/A |
| Q4ULU5 | COX1_RICFE | 1, ., 9, ., 3, ., 1 | 0.4312 | 0.8188 | 0.9003 | yes | N/A |
| Q7A699 | QOX1_STAAN | 1, ., 1, 0, ., 3, ., - | 0.4574 | 0.9794 | 0.8655 | yes | N/A |
| E0TW66 | QOX1_BACPZ | 1, ., 1, 0, ., 3, ., - | 0.5 | 0.9829 | 0.8859 | yes | N/A |
| Q8CPP7 | QOX1_STAES | 1, ., 1, 0, ., 3, ., - | 0.4453 | 0.9829 | 0.8685 | yes | N/A |
| P0ABJ0 | CYOB_ECO57 | 1, ., 1, 0, ., 3, ., - | 0.6518 | 0.9948 | 0.8778 | N/A | N/A |
| Q6GI24 | QOX1_STAAR | 1, ., 1, 0, ., 3, ., - | 0.4574 | 0.9794 | 0.8655 | yes | N/A |
| Q2FZK0 | QOX1_STAA8 | 1, ., 1, 0, ., 3, ., - | 0.4574 | 0.9794 | 0.8655 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.10.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 585 | |||
| TIGR02843 | 646 | TIGR02843, CyoB, cytochrome o ubiquinol oxidase, s | 0.0 | |
| PRK15017 | 663 | PRK15017, PRK15017, cytochrome o ubiquinol oxidase | 0.0 | |
| cd01662 | 501 | cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase su | 0.0 | |
| COG0843 | 566 | COG0843, CyoB, Heme/copper-type cytochrome/quinol | 0.0 | |
| TIGR02882 | 643 | TIGR02882, QoxB, cytochrome aa3 quinol oxidase, su | 0.0 | |
| TIGR02891 | 499 | TIGR02891, CtaD_CoxA, cytochrome c oxidase, subuni | 1e-174 | |
| cd00919 | 463 | cd00919, Heme_Cu_Oxidase_I, Heme-copper oxidase su | 1e-168 | |
| cd01663 | 488 | cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase sub | 1e-143 | |
| pfam00115 | 441 | pfam00115, COX1, Cytochrome C and Quinol oxidase p | 1e-130 | |
| MTH00184 | 519 | MTH00184, COX1, cytochrome c oxidase subunit I; Pr | 1e-124 | |
| MTH00182 | 525 | MTH00182, COX1, cytochrome c oxidase subunit I; Pr | 1e-122 | |
| MTH00223 | 512 | MTH00223, COX1, cytochrome c oxidase subunit I; Pr | 1e-118 | |
| MTH00116 | 515 | MTH00116, COX1, cytochrome c oxidase subunit I; Pr | 1e-118 | |
| MTH00167 | 512 | MTH00167, COX1, cytochrome c oxidase subunit I; Pr | 1e-116 | |
| MTH00142 | 511 | MTH00142, COX1, cytochrome c oxidase subunit I; Pr | 1e-116 | |
| MTH00153 | 511 | MTH00153, COX1, cytochrome c oxidase subunit I; Pr | 1e-113 | |
| MTH00037 | 517 | MTH00037, COX1, cytochrome c oxidase subunit I; Pr | 1e-109 | |
| MTH00183 | 516 | MTH00183, COX1, cytochrome c oxidase subunit I; Pr | 1e-109 | |
| MTH00103 | 513 | MTH00103, COX1, cytochrome c oxidase subunit I; Va | 1e-107 | |
| MTH00077 | 514 | MTH00077, COX1, cytochrome c oxidase subunit I; Pr | 1e-107 | |
| MTH00007 | 511 | MTH00007, COX1, cytochrome c oxidase subunit I; Va | 1e-105 | |
| MTH00079 | 508 | MTH00079, COX1, cytochrome c oxidase subunit I; Pr | 1e-104 | |
| MTH00026 | 534 | MTH00026, COX1, cytochrome c oxidase subunit I; Pr | 1e-104 | |
| MTH00048 | 511 | MTH00048, COX1, cytochrome c oxidase subunit I; Pr | 4e-81 | |
| cd01660 | 473 | cd01660, ba3-like_Oxidase_I, ba3-like heme-copper | 9e-22 |
| >gnl|CDD|131890 TIGR02843, CyoB, cytochrome o ubiquinol oxidase, subunit I | Back alignment and domain information |
|---|
Score = 954 bits (2467), Expect = 0.0
Identities = 401/580 (69%), Positives = 472/580 (81%), Gaps = 1/580 (0%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
ML RGF DA+MMR QQA++ G S GYLPP HY+QIFTAHGVIMIFFVAMP V G++N +V
Sbjct: 67 MLLRGFADAIMMRTQQALASGGSAGYLPPHHYDQIFTAHGVIMIFFVAMPFVFGLMNLVV 126
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFPFLN+LSFW+T GAILV +SL +GEFA TGWL YPPLS + SPGVGV
Sbjct: 127 PLQIGARDVAFPFLNSLSFWLTVVGAILVNVSLGVGEFAQTGWLAYPPLSELQYSPGVGV 186
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DYYIW+LQI+GIGTLL+GIN TIIKMRAPGM LM MP+FTWT+LC+N+LI+A+FP+LT
Sbjct: 187 DYYIWALQISGIGTLLTGINFFVTIIKMRAPGMTLMKMPVFTWTSLCSNVLIIASFPILT 246
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
L L TLDRY+G HFFTN+ GGN MMYVNLIW WGHPEVYIL+LP FGIFSEVV+TFS
Sbjct: 247 VTLALLTLDRYLGMHFFTNEAGGNPMMYVNLIWAWGHPEVYILILPAFGIFSEVVATFSR 306
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFGY+SMV+AT+ IT+LS+IVWLHHFFTMG+GANVNAFFGI TMII+IPTG KIFNWL
Sbjct: 307 KRLFGYTSMVWATIAITVLSFIVWLHHFFTMGAGANVNAFFGIATMIIAIPTGVKIFNWL 366
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FTMY+GRIRFE P+LWTIGFM+TF IGGM GV+LAVP A+F+LHNSLFL+AHFHNVIIGG
Sbjct: 367 FTMYKGRIRFETPMLWTIGFMVTFSIGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGG 426
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+FG +G+ YWFPKAFG+KL GK SFW W IGFY+AFMPLYILGFMG+TRR++H++
Sbjct: 427 VVFGCFAGLTYWFPKAFGFKLNEKLGKRSFWCWFIGFYLAFMPLYILGFMGMTRRLNHYD 486
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
+ IAAFG LIA GIL IIQ+ VS R R D TGDPW GRTLEWSTSSPP
Sbjct: 487 NPEWHPMLIIAAFGAFLIACGILCQIIQIFVSIRDRDQNRDTTGDPWGGRTLEWSTSSPP 546
Query: 481 PVYNFAFIPLIHQSDSWWYMKKNNFKFPK-DKFQDILMPKNTNIGILISIFSLIMGFALV 539
P YNFA IP + D++W MKK +P+ K++DI MPKNT G +I FSL+ GFALV
Sbjct: 547 PFYNFAVIPKVQDRDAFWDMKKKGVAYPRPAKYEDIHMPKNTAAGFIIGAFSLVFGFALV 606
Query: 540 WHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIE 579
WH+W L II F+ + +I +F+ +YY+ +EE+ IE
Sbjct: 607 WHIWWLAIIGFVGIIATLIVRSFDDDVDYYVPAEEVKKIE 646
|
Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant [Energy metabolism, Electron transport]. Length = 646 |
| >gnl|CDD|184978 PRK15017, PRK15017, cytochrome o ubiquinol oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238832 cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I | Back alignment and domain information |
|---|
| >gnl|CDD|223913 COG0843, CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|131928 TIGR02882, QoxB, cytochrome aa3 quinol oxidase, subunit I | Back alignment and domain information |
|---|
| >gnl|CDD|213748 TIGR02891, CtaD_CoxA, cytochrome c oxidase, subunit I | Back alignment and domain information |
|---|
| >gnl|CDD|238461 cd00919, Heme_Cu_Oxidase_I, Heme-copper oxidase subunit I | Back alignment and domain information |
|---|
| >gnl|CDD|238833 cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I | Back alignment and domain information |
|---|
| >gnl|CDD|215728 pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I | Back alignment and domain information |
|---|
| >gnl|CDD|177235 MTH00184, COX1, cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214451 MTH00182, COX1, cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177260 MTH00223, COX1, cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177177 MTH00116, COX1, cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177222 MTH00167, COX1, cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214431 MTH00142, COX1, cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177210 MTH00153, COX1, cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177112 MTH00037, COX1, cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177234 MTH00183, COX1, cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177165 MTH00103, COX1, cytochrome c oxidase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|214419 MTH00077, COX1, cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|133649 MTH00007, COX1, cytochrome c oxidase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|177148 MTH00079, COX1, cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|164599 MTH00026, COX1, cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177123 MTH00048, COX1, cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238830 cd01660, ba3-like_Oxidase_I, ba3-like heme-copper oxidase subunit I | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| PRK15017 | 663 | cytochrome o ubiquinol oxidase subunit I; Provisio | 100.0 | |
| TIGR02843 | 646 | CyoB cytochrome o ubiquinol oxidase, subunit I. Cy | 100.0 | |
| TIGR02882 | 643 | QoxB cytochrome aa3 quinol oxidase, subunit I. Thi | 100.0 | |
| COG0843 | 566 | CyoB Heme/copper-type cytochrome/quinol oxidases, | 100.0 | |
| MTH00223 | 512 | COX1 cytochrome c oxidase subunit I; Provisional | 100.0 | |
| MTH00183 | 516 | COX1 cytochrome c oxidase subunit I; Provisional | 100.0 | |
| MTH00077 | 514 | COX1 cytochrome c oxidase subunit I; Provisional | 100.0 | |
| MTH00103 | 513 | COX1 cytochrome c oxidase subunit I; Validated | 100.0 | |
| MTH00142 | 511 | COX1 cytochrome c oxidase subunit I; Provisional | 100.0 | |
| MTH00184 | 519 | COX1 cytochrome c oxidase subunit I; Provisional | 100.0 | |
| MTH00116 | 515 | COX1 cytochrome c oxidase subunit I; Provisional | 100.0 | |
| MTH00182 | 525 | COX1 cytochrome c oxidase subunit I; Provisional | 100.0 | |
| MTH00007 | 511 | COX1 cytochrome c oxidase subunit I; Validated | 100.0 | |
| MTH00037 | 517 | COX1 cytochrome c oxidase subunit I; Provisional | 100.0 | |
| MTH00167 | 512 | COX1 cytochrome c oxidase subunit I; Provisional | 100.0 | |
| MTH00048 | 511 | COX1 cytochrome c oxidase subunit I; Provisional | 100.0 | |
| MTH00153 | 511 | COX1 cytochrome c oxidase subunit I; Provisional | 100.0 | |
| MTH00026 | 534 | COX1 cytochrome c oxidase subunit I; Provisional | 100.0 | |
| MTH00079 | 508 | COX1 cytochrome c oxidase subunit I; Provisional | 100.0 | |
| TIGR02891 | 506 | CtaD_CoxA cytochrome c oxidase, subunit I. These f | 100.0 | |
| cd01662 | 501 | Ubiquinol_Oxidase_I Ubiquinol oxidase subunit I. U | 100.0 | |
| cd01663 | 488 | Cyt_c_Oxidase_I Cytochrome C oxidase subunit I. Cy | 100.0 | |
| cd00919 | 463 | Heme_Cu_Oxidase_I Heme-copper oxidase subunit I. H | 100.0 | |
| cd01660 | 473 | ba3-like_Oxidase_I ba3-like heme-copper oxidase su | 100.0 | |
| PF00115 | 447 | COX1: Cytochrome C and Quinol oxidase polypeptide | 100.0 | |
| PRK14488 | 473 | cbb3-type cytochrome c oxidase subunit I; Provisio | 100.0 | |
| cd01661 | 493 | cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. | 100.0 | |
| TIGR00780 | 474 | ccoN cytochrome c oxidase, cbb3-type, subunit I. G | 100.0 | |
| PRK14485 | 712 | putative bifunctional cbb3-type cytochrome c oxida | 100.0 | |
| COG3278 | 482 | CcoN Cbb3-type cytochrome oxidase, subunit 1 [Post | 100.0 | |
| KOG4769|consensus | 182 | 100.0 | ||
| COG3256 | 717 | NorB Nitric oxide reductase large subunit [Inorgan | 99.31 | |
| TIGR00780 | 474 | ccoN cytochrome c oxidase, cbb3-type, subunit I. G | 98.38 | |
| PRK14485 | 712 | putative bifunctional cbb3-type cytochrome c oxida | 98.02 | |
| cd01661 | 493 | cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. | 97.64 | |
| PRK14488 | 473 | cbb3-type cytochrome c oxidase subunit I; Provisio | 97.28 | |
| TIGR02891 | 506 | CtaD_CoxA cytochrome c oxidase, subunit I. These f | 97.12 | |
| cd01663 | 488 | Cyt_c_Oxidase_I Cytochrome C oxidase subunit I. Cy | 96.89 | |
| PF12270 | 137 | Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; Inte | 96.19 | |
| MTH00153 | 511 | COX1 cytochrome c oxidase subunit I; Provisional | 96.17 | |
| PF00115 | 447 | COX1: Cytochrome C and Quinol oxidase polypeptide | 96.0 | |
| cd01662 | 501 | Ubiquinol_Oxidase_I Ubiquinol oxidase subunit I. U | 95.98 | |
| TIGR02882 | 643 | QoxB cytochrome aa3 quinol oxidase, subunit I. Thi | 95.86 | |
| MTH00183 | 516 | COX1 cytochrome c oxidase subunit I; Provisional | 95.6 | |
| MTH00184 | 519 | COX1 cytochrome c oxidase subunit I; Provisional | 95.56 | |
| cd01660 | 473 | ba3-like_Oxidase_I ba3-like heme-copper oxidase su | 95.52 | |
| MTH00007 | 511 | COX1 cytochrome c oxidase subunit I; Validated | 95.48 | |
| cd00919 | 463 | Heme_Cu_Oxidase_I Heme-copper oxidase subunit I. H | 94.99 | |
| MTH00142 | 511 | COX1 cytochrome c oxidase subunit I; Provisional | 94.71 | |
| MTH00223 | 512 | COX1 cytochrome c oxidase subunit I; Provisional | 94.35 | |
| MTH00182 | 525 | COX1 cytochrome c oxidase subunit I; Provisional | 94.04 | |
| COG3278 | 482 | CcoN Cbb3-type cytochrome oxidase, subunit 1 [Post | 93.95 | |
| MTH00037 | 517 | COX1 cytochrome c oxidase subunit I; Provisional | 93.94 | |
| MTH00116 | 515 | COX1 cytochrome c oxidase subunit I; Provisional | 93.03 | |
| MTH00103 | 513 | COX1 cytochrome c oxidase subunit I; Validated | 93.02 | |
| MTH00048 | 511 | COX1 cytochrome c oxidase subunit I; Provisional | 91.17 | |
| TIGR02843 | 646 | CyoB cytochrome o ubiquinol oxidase, subunit I. Cy | 90.34 | |
| PRK15017 | 663 | cytochrome o ubiquinol oxidase subunit I; Provisio | 90.33 | |
| MTH00079 | 508 | COX1 cytochrome c oxidase subunit I; Provisional | 87.68 | |
| MTH00026 | 534 | COX1 cytochrome c oxidase subunit I; Provisional | 85.07 | |
| PF05940 | 379 | NnrS: NnrS protein; InterPro: IPR010266 This famil | 84.9 | |
| MTH00167 | 512 | COX1 cytochrome c oxidase subunit I; Provisional | 83.26 | |
| MTH00077 | 514 | COX1 cytochrome c oxidase subunit I; Provisional | 82.46 |
| >PRK15017 cytochrome o ubiquinol oxidase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-166 Score=1366.09 Aligned_cols=584 Identities=65% Similarity=1.227 Sum_probs=566.0
Q ss_pred CchhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 1 ~l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
++++|+++|++||+||+.|..+.++++++++|||++|+||++|+|++++|+++|++||++|+|+|+||++|||+|++|||
T Consensus 68 ~~~~Gg~~alliR~qlal~~~~~~~~l~~~~Yn~~~T~HG~iMiFf~~mP~~~Gf~N~lvPl~iGarDmafPrLN~lsfW 147 (663)
T PRK15017 68 MLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFW 147 (663)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhhHH
Confidence 46899999999999998553222467899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
++..|.+++++|++.|+++++|||.|||||+..++|+.++|+|++|+++.++||+++++|+++|+.|||+|||+++|||+
T Consensus 148 l~~~g~~l~~~s~~~g~~~~~GWT~YpPLs~~~~spg~~vd~~i~~l~l~gisSil~~iNfi~Ti~~mRapGmt~~rmPl 227 (663)
T PRK15017 148 FTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPV 227 (663)
T ss_pred HHHHHHHHHHHHHhhhccccCCCccCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCeecH
Confidence 99999999999999999999999999999987889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcC
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~ 240 (585)
|+|+.++|++++++++|+++++++|+++||++|++||+|..||||++||||||+||||||||+++|++|++||++|+++|
T Consensus 228 f~W~~l~tsil~l~a~PvL~~a~~mLl~Dr~~gt~FF~~~~GGdplL~qhLFWffGHPeVYIliLPafGiis~ii~~~s~ 307 (663)
T PRK15017 228 FTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSR 307 (663)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCceecCCCCCCChHHHhHHHhhccchhHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHHH
Q psy2379 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGF 320 (585)
Q Consensus 241 kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~~ 320 (585)
||+|||+.+++|+.+++++|+.||+||||++|++.+.|.+|+++||+|||||++|+|||++|+++||+|+++|++|+++|
T Consensus 308 k~lfgy~~mv~A~~~I~~lsf~VW~HHmFt~G~~~~~~~~F~~~Tm~IAvPTgvkiF~Wl~Tl~~g~i~~~~pml~~lgf 387 (663)
T PRK15017 308 KRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGF 387 (663)
T ss_pred CcccccHHHHHHHHHHHHHhceechhheeeccCchHHHHHHHHHHHHHHhhhHHHHHHHHHHccCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHHH
Q psy2379 321 MITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVA 400 (585)
Q Consensus 321 i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l~ 400 (585)
+++|++||+||+++|++++|.++|||||||||||+++++|++|++++|+|||+||++||++|||++|+|||++++|+|++
T Consensus 388 i~~F~iGGlTGV~la~~~~D~~lHdTyfVVaHFHyvl~~G~vf~if~g~~yWfPk~tG~~l~e~lgk~~Fwl~fiG~nlt 467 (663)
T PRK15017 388 IVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVA 467 (663)
T ss_pred HHHHHHHhhchHHhhhHHHHHHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCCC
Q psy2379 401 FMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480 (585)
Q Consensus 401 f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sPP 480 (585)
|+|||++|++|||||+++|++++|+++|.++++||+++.+|+++|++|+++|+++|++.++.++|||+++||||+++|||
T Consensus 468 F~pmh~lGl~GMPRR~~~y~~~~~~~~n~issiGa~i~~~~~l~fi~~~~~s~~~~~~~~~~~~~pw~~~tlEW~~~sPp 547 (663)
T PRK15017 468 FMPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAALIALGILCQVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPP 547 (663)
T ss_pred HHHHHHHhcCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCCChhhCcCCCC
Confidence 99999999999999999998778999999999999999999999999999999998877777889999999999999999
Q ss_pred CCCCCCcCcccccCChhhhhccCCCCCC-CCCcccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2379 481 PVYNFAFIPLIHQSDSWWYMKKNNFKFP-KDKFQDILMPKNTNIGILISIFSLIMGFALVWHMWLLTIISFIITLIIVIY 559 (585)
Q Consensus 481 p~~nf~~~P~V~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 559 (585)
|+|||+++|+|++|||+|++|++|+.+. |+++++||||+||+.|++++....+++|+++||+||++++++++++++++.
T Consensus 548 p~~nf~~~P~v~~~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (663)
T PRK15017 548 PFYNFAVVPHVHERDAFWEMKEKGEAYKQPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIITWIV 627 (663)
T ss_pred cccCCccCcCcCCchhhhcccccccccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888776554 678999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcccChhhHHhhHHhhhc
Q psy2379 560 NTFNYKRNYYISSEEITCIEKKRIR 584 (585)
Q Consensus 560 ~~~~~~~~~~i~~~~v~~~e~~~~~ 584 (585)
|++++|+|||||+|||||+|+++.+
T Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (663)
T PRK15017 628 KSFDEDVDYYVPVAEIEKLENQHFD 652 (663)
T ss_pred hhhcCCCCeEEcHHHHHHHHHHHHh
Confidence 9999999999999999999998763
|
|
| >TIGR02843 CyoB cytochrome o ubiquinol oxidase, subunit I | Back alignment and domain information |
|---|
| >TIGR02882 QoxB cytochrome aa3 quinol oxidase, subunit I | Back alignment and domain information |
|---|
| >COG0843 CyoB Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion] | Back alignment and domain information |
|---|
| >MTH00223 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00183 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00077 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00103 COX1 cytochrome c oxidase subunit I; Validated | Back alignment and domain information |
|---|
| >MTH00142 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00184 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00116 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00182 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00007 COX1 cytochrome c oxidase subunit I; Validated | Back alignment and domain information |
|---|
| >MTH00037 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00167 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00048 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00153 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00026 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00079 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >TIGR02891 CtaD_CoxA cytochrome c oxidase, subunit I | Back alignment and domain information |
|---|
| >cd01662 Ubiquinol_Oxidase_I Ubiquinol oxidase subunit I | Back alignment and domain information |
|---|
| >cd01663 Cyt_c_Oxidase_I Cytochrome C oxidase subunit I | Back alignment and domain information |
|---|
| >cd00919 Heme_Cu_Oxidase_I Heme-copper oxidase subunit I | Back alignment and domain information |
|---|
| >cd01660 ba3-like_Oxidase_I ba3-like heme-copper oxidase subunit I | Back alignment and domain information |
|---|
| >PF00115 COX1: Cytochrome C and Quinol oxidase polypeptide I This family corresponds to chains a and n | Back alignment and domain information |
|---|
| >PRK14488 cbb3-type cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I | Back alignment and domain information |
|---|
| >TIGR00780 ccoN cytochrome c oxidase, cbb3-type, subunit I | Back alignment and domain information |
|---|
| >PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional | Back alignment and domain information |
|---|
| >COG3278 CcoN Cbb3-type cytochrome oxidase, subunit 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4769|consensus | Back alignment and domain information |
|---|
| >COG3256 NorB Nitric oxide reductase large subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR00780 ccoN cytochrome c oxidase, cbb3-type, subunit I | Back alignment and domain information |
|---|
| >PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional | Back alignment and domain information |
|---|
| >cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I | Back alignment and domain information |
|---|
| >PRK14488 cbb3-type cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >TIGR02891 CtaD_CoxA cytochrome c oxidase, subunit I | Back alignment and domain information |
|---|
| >cd01663 Cyt_c_Oxidase_I Cytochrome C oxidase subunit I | Back alignment and domain information |
|---|
| >PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria | Back alignment and domain information |
|---|
| >MTH00153 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >PF00115 COX1: Cytochrome C and Quinol oxidase polypeptide I This family corresponds to chains a and n | Back alignment and domain information |
|---|
| >cd01662 Ubiquinol_Oxidase_I Ubiquinol oxidase subunit I | Back alignment and domain information |
|---|
| >TIGR02882 QoxB cytochrome aa3 quinol oxidase, subunit I | Back alignment and domain information |
|---|
| >MTH00183 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00184 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >cd01660 ba3-like_Oxidase_I ba3-like heme-copper oxidase subunit I | Back alignment and domain information |
|---|
| >MTH00007 COX1 cytochrome c oxidase subunit I; Validated | Back alignment and domain information |
|---|
| >cd00919 Heme_Cu_Oxidase_I Heme-copper oxidase subunit I | Back alignment and domain information |
|---|
| >MTH00142 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00223 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00182 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >COG3278 CcoN Cbb3-type cytochrome oxidase, subunit 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >MTH00037 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00116 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00103 COX1 cytochrome c oxidase subunit I; Validated | Back alignment and domain information |
|---|
| >MTH00048 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >TIGR02843 CyoB cytochrome o ubiquinol oxidase, subunit I | Back alignment and domain information |
|---|
| >PRK15017 cytochrome o ubiquinol oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00079 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00026 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >PF05940 NnrS: NnrS protein; InterPro: IPR010266 This family consists of several bacterial NnrS like proteins | Back alignment and domain information |
|---|
| >MTH00167 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
| >MTH00077 COX1 cytochrome c oxidase subunit I; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 585 | ||||
| 1fft_A | 663 | The Structure Of Ubiquinol Oxidase From Escherichia | 0.0 | ||
| 1m56_A | 566 | Structure Of Cytochrome C Oxidase From Rhodobactor | 1e-89 | ||
| 1m57_A | 566 | Structure Of Cytochrome C Oxidase From Rhodobacter | 3e-89 | ||
| 1v54_A | 514 | Bovine Heart Cytochrome C Oxidase At The Fully Oxid | 5e-88 | ||
| 1occ_A | 514 | Structure Of Bovine Heart Cytochrome C Oxidase At T | 5e-88 | ||
| 1ar1_A | 558 | Structure At 2.7 Angstrom Resolution Of The Paracoc | 7e-88 | ||
| 1qle_A | 538 | Cryo-structure Of The Paracoccus Denitrificans Four | 8e-88 | ||
| 3omi_A | 535 | Catalytic Core Subunits (I And Ii) Of Cytochrome C | 1e-87 | ||
| 3om3_A | 535 | Catalytic Core Subunits (I And Ii) Of Cytochrome C | 1e-87 | ||
| 3ehb_A | 558 | A D-Pathway Mutation Decouples The Paracoccus Denit | 2e-87 | ||
| 2yev_A | 791 | Structure Of Caa3-Type Cytochrome Oxidase Length = | 3e-86 | ||
| 4gp8_A | 568 | Structure Of Recombinant Cytochrome Ba3 Oxidase Mut | 3e-08 | ||
| 4gp5_A | 568 | Structure Of Recombinant Cytochrome Ba3 Oxidase Mut | 5e-08 | ||
| 2qpd_A | 568 | An Unexpected Outcome Of Surface-Engineering An Int | 2e-07 | ||
| 3eh3_A | 618 | Structure Of The Reduced Form Of Cytochrome Ba3 Oxi | 2e-07 | ||
| 4faa_A | 568 | Structure Of Recombinant Cytochrome Ba3 Oxidase Mut | 4e-07 | ||
| 4fa7_A | 568 | Structure Of Recombinant Cytochrome Ba3 Oxidase Mut | 4e-07 | ||
| 1xme_A | 568 | Structure Of Recombinant Cytochrome Ba3 Oxidase Fro | 5e-07 | ||
| 1ehk_A | 562 | Crystal Structure Of The Aberrant Ba3-Cytochrome-C | 5e-07 | ||
| 3s8f_A | 569 | 1.8 A Structure Of Ba3 Cytochrome C Oxidase From Th | 5e-07 | ||
| 4gp4_A | 568 | Structure Of Recombinant Cytochrome Ba3 Oxidase Mut | 5e-07 | ||
| 3s8g_A | 569 | 1.8 A Structure Of Ba3 Cytochrome C Oxidase Mutant | 5e-07 |
| >pdb|1FFT|A Chain A, The Structure Of Ubiquinol Oxidase From Escherichia Coli Length = 663 | Back alignment and structure |
|
| >pdb|1M56|A Chain A, Structure Of Cytochrome C Oxidase From Rhodobactor Sphaeroides (Wild Type) Length = 566 | Back alignment and structure |
| >pdb|1M57|A Chain A, Structure Of Cytochrome C Oxidase From Rhodobacter Sphaeroides (Eq(I-286) Mutant)) Length = 566 | Back alignment and structure |
| >pdb|1V54|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 514 | Back alignment and structure |
| >pdb|1OCC|A Chain A, Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 514 | Back alignment and structure |
| >pdb|1AR1|A Chain A, Structure At 2.7 Angstrom Resolution Of The Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed With An Antibody Fv Fragment Length = 558 | Back alignment and structure |
| >pdb|1QLE|A Chain A, Cryo-structure Of The Paracoccus Denitrificans Four-subunit Cytochrome C Oxidase In The Completely Oxidized State Complexed With An Antibody Fv Fragment Length = 538 | Back alignment and structure |
| >pdb|3OMI|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase From Rhodobacter Sphaeroides With D132a Mutation Length = 535 | Back alignment and structure |
| >pdb|3OM3|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase From Rhodobacter Sphaeroides With K362m Mutation In The Reduced State Length = 535 | Back alignment and structure |
| >pdb|3EHB|A Chain A, A D-Pathway Mutation Decouples The Paracoccus Denitrificans Cytochrome C Oxidase By Altering The Side Chain Orientation Of A Distant, Conserved Glutamate Length = 558 | Back alignment and structure |
| >pdb|2YEV|A Chain A, Structure Of Caa3-Type Cytochrome Oxidase Length = 791 | Back alignment and structure |
| >pdb|4GP8|A Chain A, Structure Of Recombinant Cytochrome Ba3 Oxidase Mutant Y133w+t231f From Thermus Thermophilus Length = 568 | Back alignment and structure |
| >pdb|4GP5|A Chain A, Structure Of Recombinant Cytochrome Ba3 Oxidase Mutant Y133w From Thermus Thermophilus Length = 568 | Back alignment and structure |
| >pdb|2QPD|A Chain A, An Unexpected Outcome Of Surface-Engineering An Integral Membrane Protein: Improved Crystallization Of Cytochrome Ba3 Oxidase From Thermus Thermophilus Length = 568 | Back alignment and structure |
| >pdb|3EH3|A Chain A, Structure Of The Reduced Form Of Cytochrome Ba3 Oxidase From Thermus Thermophilus Length = 618 | Back alignment and structure |
| >pdb|4FAA|A Chain A, Structure Of Recombinant Cytochrome Ba3 Oxidase Mutant A120f+a204f From Thermus Thermophilus Length = 568 | Back alignment and structure |
| >pdb|4FA7|A Chain A, Structure Of Recombinant Cytochrome Ba3 Oxidase Mutant A204f From Thermus Thermophilus Length = 568 | Back alignment and structure |
| >pdb|1XME|A Chain A, Structure Of Recombinant Cytochrome Ba3 Oxidase From Thermus Thermophilus Length = 568 | Back alignment and structure |
| >pdb|1EHK|A Chain A, Crystal Structure Of The Aberrant Ba3-Cytochrome-C Oxidase From Thermus Thermophilus Length = 562 | Back alignment and structure |
| >pdb|3S8F|A Chain A, 1.8 A Structure Of Ba3 Cytochrome C Oxidase From Thermus Thermophilus In Lipid Environment Length = 569 | Back alignment and structure |
| >pdb|4GP4|A Chain A, Structure Of Recombinant Cytochrome Ba3 Oxidase Mutant Y133f From Thermus Thermophilus Length = 568 | Back alignment and structure |
| >pdb|3S8G|A Chain A, 1.8 A Structure Of Ba3 Cytochrome C Oxidase Mutant (A120f) From Thermus Thermophilus In Lipid Environment Length = 569 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.24.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 836 bits (2162), Expect = 0.0
Identities = 380/586 (64%), Positives = 467/586 (79%), Gaps = 1/586 (0%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIV 60
ML RGF DA+MMR QQA++ G+LPP HY+QIFTAHGVIMIFFVAMP V G++N +V
Sbjct: 68 MLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVV 127
Query: 61 PLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGV 120
PLQIGARDVAFPFLNNLSFW T G ILV +SL +GEFA TGWL YPPLSGI SPGVGV
Sbjct: 128 PLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGV 187
Query: 121 DYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVLT 180
DY+IWSLQ++GIGT L+GIN TI+KMRAPGM + MP+FTW +LC N+LI+A+FP+LT
Sbjct: 188 DYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILT 247
Query: 181 SVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSS 240
+ L TLDRY+GTHFFTND+GGN+MMY+NLIW WGHPEVYIL+LPVFG+FSE+ +TFS
Sbjct: 248 VTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSR 307
Query: 241 KRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWL 300
KRLFGY+S+V+ATV IT+LS+IVWLHHFFTMG+GANVNAFFGITTMII+IPTG KIFNWL
Sbjct: 308 KRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWL 367
Query: 301 FTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGG 360
FTMY+GRI F +LWTIGF++TF +GGM GV+LAVP A+F+LHNSLFL+AHFHNVIIGG
Sbjct: 368 FTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGG 427
Query: 361 VLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSHFE 420
V+FG +G+ YW+PKAFG+KL WGK +FWFW+IGF+VAFMPLY LGFMG+TRR+S
Sbjct: 428 VVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQI 487
Query: 421 DISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPP 480
D IAA G +LIA+GIL +IQ+ VS R R D+TGDPW GRTLEW+TSSPP
Sbjct: 488 DPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPP 547
Query: 481 PVYNFAFIPLIHQSDSWWYMKKNNFKFPK-DKFQDILMPKNTNIGILISIFSLIMGFALV 539
P YNFA +P +H+ D++W MK+ + K D +++I MPKN+ GI+I+ FS I GFA++
Sbjct: 548 PFYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMI 607
Query: 540 WHMWLLTIISFIITLIIVIYNTFNYKRNYYISSEEITCIEKKRIRL 585
WH+W L I+ F +I I +F+ +YY+ EI +E +
Sbjct: 608 WHIWWLAIVGFAGMIITWIVKSFDEDVDYYVPVAEIEKLENQHFDE 653
|
| >2yev_A Cytochrome C oxidase polypeptide I+III; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus} Length = 791 | Back alignment and structure |
|---|
| >2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3oma_A* 3om3_A* 3omi_A* 3omn_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A* Length = 566 | Back alignment and structure |
|---|
| >3s8f_A Cytochrome C oxidase subunit 1; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 3s8g_A* 1xme_A* 3qjq_A* 3qjr_A* 3qju_A* 3qjv_A* 4esl_A* 3qjs_A* 2qpd_A* 3bvd_A* 2qpe_A* 3qjt_A* 1ehk_A* 3eh5_A* 3eh3_A* 3eh4_A* Length = 569 | Back alignment and structure |
|---|
| >1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A* 1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A* 2ein_A* 2occ_A* 2y69_A* 2ybb_L* 2zxw_A* 3abk_A* 3abl_A* 3abm_A* 3ag1_A* ... Length = 514 | Back alignment and structure |
|---|
| >3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri} Length = 474 | Back alignment and structure |
|---|
| >3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A* Length = 800 | Back alignment and structure |
|---|
| >3o0r_B Nitric oxide reductase subunit B; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa} Length = 465 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| 1fft_A | 663 | Ubiquinol oxidase; electron transport, cytochrome | 100.0 | |
| 2yev_A | 791 | Cytochrome C oxidase polypeptide I+III; electron t | 100.0 | |
| 1v54_A | 514 | Cytochrome C oxidase polypeptide I; oxidoreductase | 100.0 | |
| 2gsm_A | 566 | Cytochrome C oxidase subunit 1; transmembrane prot | 100.0 | |
| 3s8f_A | 569 | Cytochrome C oxidase subunit 1; complex IV, respir | 100.0 | |
| 3mk7_A | 474 | Cytochrome C oxidase, CBB3-type, subunit N; TM hel | 100.0 | |
| 3o0r_B | 465 | Nitric oxide reductase subunit B; oxidoreductase, | 100.0 | |
| 3ayf_A | 800 | Nitric oxide reductase; oxidoreductase; HET: HEM B | 100.0 | |
| 3o0r_B | 465 | Nitric oxide reductase subunit B; oxidoreductase, | 97.2 | |
| 3mk7_A | 474 | Cytochrome C oxidase, CBB3-type, subunit N; TM hel | 96.68 | |
| 2gsm_A | 566 | Cytochrome C oxidase subunit 1; transmembrane prot | 96.44 | |
| 1fft_A | 663 | Ubiquinol oxidase; electron transport, cytochrome | 95.77 | |
| 1v54_A | 514 | Cytochrome C oxidase polypeptide I; oxidoreductase | 95.73 | |
| 3ayf_A | 800 | Nitric oxide reductase; oxidoreductase; HET: HEM B | 95.22 | |
| 1v54_C | 261 | Cytochrome C oxidase polypeptide III; oxidoreducta | 94.96 | |
| 1m56_C | 266 | Cytochrome C oxidase; membrane protein, oxidoreduc | 94.32 | |
| 3s8f_A | 569 | Cytochrome C oxidase subunit 1; complex IV, respir | 93.95 | |
| 1qle_C | 273 | Cytochrome C oxidase polypeptide III; oxidoreducta | 92.18 | |
| 2yev_A | 791 | Cytochrome C oxidase polypeptide I+III; electron t | 88.38 |
| >1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.24.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-160 Score=1337.77 Aligned_cols=583 Identities=65% Similarity=1.231 Sum_probs=471.7
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVTGIINFIVPLQIGARDVAFPFLNNLSFWM 81 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~g~~ny~vPl~igard~a~Prln~~sfwl 81 (585)
+++|+++|++||+||+.|+.+.+.+++++.|||++|+||++|+|++++|+++|++||++|+|+|+||++|||+|++|||+
T Consensus 69 ~lvG~~~slliR~eL~~P~~~~~~~~~~~~Yn~i~T~Hg~iMIFf~vmp~~~Gfgn~lvPl~lga~dmafPrLn~~sfWl 148 (663)
T 1fft_A 69 LLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWF 148 (663)
T ss_dssp HHHHHHHHHHHTTTTTSSSSCTTCCCSTHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHCCSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHhHHHHHHHH
Confidence 68999999999999999973222577889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchHH
Q psy2379 82 TSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIF 161 (585)
Q Consensus 82 ~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~plf 161 (585)
++.|.+++..|.+.|+++++|||.|||||+++|+|+.++|++++|++++++||+++++||++||.|||+|||+++|||+|
T Consensus 149 ~~~~~~l~~~S~~~g~g~~tGWT~YpPLs~~~~~~g~~vd~~i~~l~l~gvssil~aiNfi~Ti~~mr~~gm~~~~~plf 228 (663)
T 1fft_A 149 TVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVF 228 (663)
T ss_dssp HHHHHHHHHHHHTTTCCCCSTTTTCTTTSSCSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTCCGGGCCHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCeeecCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCHH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhcCC
Q psy2379 162 TWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFSSK 241 (585)
Q Consensus 162 ~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~~k 241 (585)
+|+.++|++++++++|+++++++|++.||++|++||+|.+||||++||||||+|||||||++++|++|++||++|+++||
T Consensus 229 ~W~~l~Ta~LlllslPvLa~al~mLl~dr~~~t~ff~p~gGgdpiL~qhLFWffGHPeVYililPafGiis~iip~~s~k 308 (663)
T 1fft_A 229 TWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSRK 308 (663)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCSSCTTTTCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHHHh
Q psy2379 242 RLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIGFM 321 (585)
Q Consensus 242 plfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~~i 321 (585)
|+|||+.+++|+++++++|+.||+||||++|+|.+.|++|+++||+|++||++|+|||++|+++||+|+++|++|+++|+
T Consensus 309 ~lfgy~~mi~A~~~i~~lgf~Vw~HHmft~G~~~~~~~~f~~~TmiIaVPtgikvFnwl~Tl~gg~i~~~~pml~~lgfi 388 (663)
T 1fft_A 309 RLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGFI 388 (663)
T ss_dssp CCSSHHHHHHHHHHHHHTTSSCGGGGTTTTTCCHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCCCCCSHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHhhhceeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHHHh
Q psy2379 322 ITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAF 401 (585)
Q Consensus 322 ~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l~f 401 (585)
++|++||+||+++|++++|.++|||||||||||+++++|++|+++||+|||+||++||++|||++|+|||++++|++++|
T Consensus 389 ~~F~iGGltGv~la~~~~d~~lHdTy~VVAHFHyvl~gg~vf~~~ag~~yw~P~~tG~~l~~~l~k~~Fwl~fiG~~l~f 468 (663)
T 1fft_A 389 VTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAF 468 (663)
T ss_dssp HHHHHHHHHHHHHTSHHHHHTTTTBHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHhhcccchhhhhccceeEEeeeeehhHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCCCC
Q psy2379 402 MPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSPPP 481 (585)
Q Consensus 402 ~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sPPp 481 (585)
+|||++|++|||||++||+|+++++||.++++||+++.+|+++|++|+++|+++||+.++.++|||+++||||+++||||
T Consensus 469 ~pmh~lGl~GmpRR~~~y~d~~~~~~n~issiG~~i~~ig~llfl~~l~~Sl~~~r~~~~~~~~pw~~~tLEW~~~sPPp 548 (663)
T 1fft_A 469 MPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPPP 548 (663)
T ss_dssp HHHHHHHHTTCBTTCSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCSCSSCTTCCCTTTTSCSSCC
T ss_pred HHHHHHHhhceeecccCCCcchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCChhhccCCCCC
Confidence 99999999999999999987789999999999999999999999999999999887655557799999999999999999
Q ss_pred CCCCCcCcccccCChhhhhccCCCCCC-CCCcccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2379 482 VYNFAFIPLIHQSDSWWYMKKNNFKFP-KDKFQDILMPKNTNIGILISIFSLIMGFALVWHMWLLTIISFIITLIIVIYN 560 (585)
Q Consensus 482 ~~nf~~~P~V~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 560 (585)
+|||+|+|.+++|||+|++|+++++++ +++|++||||+||++|+++|++.++++|+++||+||++++|+++++++++.|
T Consensus 549 ~hnF~e~P~v~~~~~~w~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (663)
T 1fft_A 549 FYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIITWIVK 628 (663)
T ss_dssp TTCC----------------------------------------------------------------------------
T ss_pred ccCCccCCeecccchHHhhhhcccccccccCCcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886654 6789999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcccChhhHHhhHHhhhc
Q psy2379 561 TFNYKRNYYISSEEITCIEKKRIR 584 (585)
Q Consensus 561 ~~~~~~~~~i~~~~v~~~e~~~~~ 584 (585)
+|++|+||++|+||+||+|+++.+
T Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~ 652 (663)
T 1fft_A 629 SFDEDVDYYVPVAEIEKLENQHFD 652 (663)
T ss_dssp ------------------------
T ss_pred HhcCCCCCCCCHhHHHHHHHHHHH
Confidence 999999999999999999987653
|
| >2yev_A Cytochrome C oxidase polypeptide I+III; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A* 1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A* 2ein_A* 2occ_A* 2y69_A* 2ybb_L* 2zxw_A* 3abk_A* 3abl_A* 3abm_A* 3ag1_A* ... | Back alignment and structure |
|---|
| >2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3oma_A* 3om3_A* 3omi_A* 3omn_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A* | Back alignment and structure |
|---|
| >3s8f_A Cytochrome C oxidase subunit 1; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 3s8g_A* 1xme_A* 3qjq_A* 3qjr_A* 3qju_A* 3qjv_A* 3s33_A* 3s38_A* 3s39_A* 3s3a_A* 3s3b_A* 3s3c_A* 3s3d_A* 4esl_A* 4f05_A* 4fa7_A* 3qjs_A* 2qpd_A* 3bvd_A* 2qpe_A* ... | Back alignment and structure |
|---|
| >3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
| >3o0r_B Nitric oxide reductase subunit B; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A* | Back alignment and structure |
|---|
| >3o0r_B Nitric oxide reductase subunit B; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
| >2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3oma_A* 3om3_A* 3omi_A* 3omn_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A* | Back alignment and structure |
|---|
| >1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.24.1.1 | Back alignment and structure |
|---|
| >1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A* 1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A* 2ein_A* 2occ_A* 2y69_A* 2ybb_L* 2zxw_A* 3abk_A* 3abl_A* 3abm_A* 3ag1_A* ... | Back alignment and structure |
|---|
| >3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A* | Back alignment and structure |
|---|
| >1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ... | Back alignment and structure |
|---|
| >1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C* | Back alignment and structure |
|---|
| >3s8f_A Cytochrome C oxidase subunit 1; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 3s8g_A* 1xme_A* 3qjq_A* 3qjr_A* 3qju_A* 3qjv_A* 3s33_A* 3s38_A* 3s39_A* 3s3a_A* 3s3b_A* 3s3c_A* 3s3d_A* 4esl_A* 4f05_A* 4fa7_A* 3qjs_A* 2qpd_A* 3bvd_A* 2qpe_A* ... | Back alignment and structure |
|---|
| >1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1 | Back alignment and structure |
|---|
| >2yev_A Cytochrome C oxidase polypeptide I+III; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 585 | ||||
| d1v54a_ | 514 | f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, | 1e-145 | |
| d3dtua1 | 538 | f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome | 1e-135 | |
| d1ffta_ | 501 | f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subu | 1e-124 | |
| d1xmea1 | 549 | f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome | 7e-74 |
| >d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]} Length = 514 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Cytochrome c oxidase subunit I-like superfamily: Cytochrome c oxidase subunit I-like family: Cytochrome c oxidase subunit I-like domain: Mitochondrial cytochrome c oxidase, subunit I species: Cow (Bos taurus) [TaxId: 9913]
Score = 427 bits (1100), Expect = e-145
Identities = 178/494 (36%), Positives = 284/494 (57%), Gaps = 9/494 (1%)
Query: 1 MLFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMP-LVTGIINFI 59
G ++++R + G+ G + YN + TAH +MIFF+ MP ++ G N++
Sbjct: 26 AGMVGTALSLLIRAELG-QPGTLLG--DDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWL 82
Query: 60 VPLQIGARDVAFPFLNNLSFWMTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVG 119
VPL IGA D+AFP +NN+SFW+ +L++ S + A TGW YPPL+G G
Sbjct: 83 VPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGAS 142
Query: 120 VDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPIFTWTALCTNILIVAAFPVL 179
VD I+SL +AG+ ++L IN I TII M+ P M P+F W+ + T +L++ + PVL
Sbjct: 143 VDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVL 202
Query: 180 TSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS 239
+ + + DR + T FF GG+ ++Y +L W +GHPEVYIL+LP FG+ S +V+ +S
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYS 262
Query: 240 SKR-LFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFN 298
K+ FGY MV+A + I L +IVW HH FT+G + A+F TMII+IPTG K+F+
Sbjct: 263 GKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFS 322
Query: 299 WLFTMYRGRIRFEVPILWTIGFMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVII 358
WL T++ G I++ ++W +GF+ F +GG+ G++LA + + +LH++ ++VAHFH V+
Sbjct: 323 WLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLS 382
Query: 359 GGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYVAFMPLYILGFMGVTRRMSH 418
G +F +M G +WFP GY L W K F +G + F P + LG G+ RR S
Sbjct: 383 MGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSD 442
Query: 419 FEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSS 478
+ D + +W I++ G+ + ++ + + ++ + ++ LEW
Sbjct: 443 YPD-AYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKR---EVLTVDLTTTNLEWLNGC 498
Query: 479 PPPVYNFAFIPLIH 492
PPP + F ++
Sbjct: 499 PPPYHTFEEPTYVN 512
|
| >d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]} Length = 538 | Back information, alignment and structure |
|---|
| >d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]} Length = 501 | Back information, alignment and structure |
|---|
| >d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]} Length = 549 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| d1v54a_ | 514 | Mitochondrial cytochrome c oxidase, subunit I {Cow | 100.0 | |
| d3dtua1 | 538 | Bacterial aa3 type cytochrome c oxidase subunit I | 100.0 | |
| d1ffta_ | 501 | Cytochrome O ubiquinol oxidase, subunit I {Escheri | 100.0 | |
| d1xmea1 | 549 | Bacterial ba3 type cytochrome c oxidase subunit I | 100.0 | |
| d1xmea1 | 549 | Bacterial ba3 type cytochrome c oxidase subunit I | 96.98 | |
| d3dtua1 | 538 | Bacterial aa3 type cytochrome c oxidase subunit I | 95.87 | |
| d1ffta_ | 501 | Cytochrome O ubiquinol oxidase, subunit I {Escheri | 95.7 | |
| d1v54a_ | 514 | Mitochondrial cytochrome c oxidase, subunit I {Cow | 95.47 | |
| d1m56c_ | 265 | Bacterial aa3 type cytochrome c oxidase subunit II | 89.13 | |
| d1v54c_ | 259 | Mitochondrial cytochrome c oxidase, subunit III {C | 83.64 |
| >d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Cytochrome c oxidase subunit I-like superfamily: Cytochrome c oxidase subunit I-like family: Cytochrome c oxidase subunit I-like domain: Mitochondrial cytochrome c oxidase, subunit I species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.1e-139 Score=1138.15 Aligned_cols=484 Identities=36% Similarity=0.760 Sum_probs=473.1
Q ss_pred chhhHHHHHHHHHHHhcccCCCCCCCCcccchhHhhHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCccccchhhhhh
Q psy2379 2 LFRGFTDAVMMRLQQAISFGSSFGYLPPEHYNQIFTAHGVIMIFFVAMPLVT-GIINFIVPLQIGARDVAFPFLNNLSFW 80 (585)
Q Consensus 2 l~~G~~~all~r~ql~~p~~~~~~~l~~~~y~~~~t~Hg~~Mif~~~~p~~~-g~~ny~vPl~igard~a~Prln~~sfw 80 (585)
+++|+++|++||+||+.|+. .+.++|.|||++|+||++|+|++++|.++ |++||++|+|+|+|||+|||+|++|||
T Consensus 27 ~~~G~~lslliR~eL~~p~~---~~~~~~~Yn~~~T~Hg~iMiF~~~~P~~~ggFgn~lvPl~iGa~dmafPRlN~~sfW 103 (514)
T d1v54a_ 27 GMVGTALSLLIRAELGQPGT---LLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFW 103 (514)
T ss_dssp HHHHHHHHHHHHHHHSSSSC---SSCSHHHHHHHHHHHHHHHHHTTHHHHHTTHHHHHHHHHHTTCSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCc---cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 67899999999999999974 78899999999999999999999999998 799999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccchH
Q psy2379 81 MTSGGAILVMISLFIGEFASTGWLGYPPLSGIAQSPGVGVDYYIWSLQIAGIGTLLSGINMIATIIKMRAPGMKLMNMPI 160 (585)
Q Consensus 81 l~~~g~~l~~~s~~~G~~~~~gWt~YpPls~~~~~p~~~~d~~i~~l~l~~vg~~l~~in~i~Ti~~~r~~gm~~~~~pl 160 (585)
++..|.+++..|.+.++++++|||.|||||+.+++++.++|++++|+++.++||+++++|+++||.|+|+|||+++|+|+
T Consensus 104 l~~~~~~ll~~s~~~~~g~~~GWT~YpPLs~~~~~~~~~vdl~i~~l~l~gissilg~iNfi~Ti~~~r~~gm~~~r~Pl 183 (514)
T d1v54a_ 104 LLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPL 183 (514)
T ss_dssp THHHHHHHHHHHHHSTTCCCSTTTTCTTTTSTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTTCCGGGSCH
T ss_pred HHHHHHHHHHHHHccCCCCCCcceecccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccch
Confidence 99999999999999988899999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccceeeccCCCCcchhhhHHHHHhhhhHHHHhhhhhHHHHHHHHhhhc-
Q psy2379 161 FTWTALCTNILIVAAFPVLTSVLFLSTLDRYIGTHFFTNDLGGNIMMYVNLIWIWGHPEVYILVLPVFGIFSEVVSTFS- 239 (585)
Q Consensus 161 f~w~~l~t~il~l~a~p~l~~a~~~l~~dr~~~~~ff~~~~Ggdpll~q~LfW~fGHp~Vyi~ilPa~gi~~~iip~~~- 239 (585)
++|+.++|++++++++|+++++++++++||++|++||++..||||++||||||+|||||||++++|++|++||++|+++
T Consensus 184 f~Ws~~vtsil~l~a~PvLa~a~~~ll~dr~~gt~ff~~~~Ggdp~L~qhLFWffgHPeVYi~iLPa~g~~s~ii~~~s~ 263 (514)
T d1v54a_ 184 FVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSG 263 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCcCHHHHHHHHHhcCCceeeeeHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHhhHhccccccccCCchhHHHHHHHHHHHHhhchhHHHHHHHHhhcCCccccchhHHHHHH
Q psy2379 240 SKRLFGYSSMVYATVVITLLSYIVWLHHFFTMGSGANVNAFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPILWTIG 319 (585)
Q Consensus 240 ~kplfsy~~~v~a~~~i~~ls~~vw~HHmf~~g~~~~~~~~f~~~t~~iaiPtgv~ifnwl~Tl~~g~i~~~~p~lf~l~ 319 (585)
|||+|||+.+++|+.+++++|+.||.||||++|+|++.|.+|+++|++|++||++|+|||++|+|+||+++++|++|+++
T Consensus 264 rk~~fg~~~~v~a~~~i~~ls~~Vw~HHmft~g~~~~~~~~f~~~T~~IaiPt~vkvfnwi~T~~~g~~~~~~~~l~~l~ 343 (514)
T d1v54a_ 264 KKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALG 343 (514)
T ss_dssp CSSCTTHHHHHHHHHHHHHHTTSCGGGGCTTSCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred CCcccChHHHHHHHHHHHHHhhhhcccceeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccccceeecccccccccccceEEEeeeehhhhhhHHHHHHHHHHHHhhhhccccCCchhhhHHHHHHHHHHHH
Q psy2379 320 FMITFVIGGMAGVILAVPAANFLLHNSLFLVAHFHNVIIGGVLFGLMSGINYWFPKAFGYKLEPFWGKCSFWFWLIGFYV 399 (585)
Q Consensus 320 ~i~~f~iGG~tGv~la~~~~d~~~H~T~~VvaHfH~~l~gg~~f~~~ag~yyw~Pkl~G~~~~~~l~~~~fwl~~iG~~l 399 (585)
|+++|++||+||+++|+.++|.++||||||||||||++.+|++++++|++|||+||++||++|||++|+|||++++|+++
T Consensus 344 fi~~F~~GG~tGi~la~~~~D~~lHdTy~VVaHFH~vl~~g~v~~~~a~~y~w~Pk~~Gr~~~e~l~~~~f~~~fiG~~~ 423 (514)
T d1v54a_ 344 FIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNM 423 (514)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhheecccchhheeeccceeEEeeeeeeeehHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCCcccccccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCccccccCCC
Q psy2379 400 AFMPLYILGFMGVTRRMSHFEDISLQIWFQIAAFGTLLIAMGILSFIIQLIVSYRKRHTLIDITGDPWNGRTLEWSTSSP 479 (585)
Q Consensus 400 ~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~~i~siGa~i~~~g~llfv~nl~~Sl~~~~~~~~~~~~PW~~~tLEW~~~sP 479 (585)
+|+|||++|++|||||++||++ +++++|.++++|++++++++++|++|+++|+++|||. .+|||+++||||+++||
T Consensus 424 ~f~pmh~lGl~GmpRR~~~Y~~-~~~~~n~~~siG~~i~~~~~~~f~~~~~~s~~~~~~~---~~~pw~~~tlEW~~~sP 499 (514)
T d1v54a_ 424 TFFPQHFLGLSGMPRRYSDYPD-AYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREV---LTVDLTTTNLEWLNGCP 499 (514)
T ss_dssp HHTHHHHHHHTTCBTTCSSCCG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBB---CCCTTGGGCGGGTTCSS
T ss_pred HHHHHHHHhcCCCCCcccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCCCCCChhhccCCC
Confidence 9999999999999999999975 8999999999999999999999999999999988755 45999999999999999
Q ss_pred CCCCCCCcCcccc
Q psy2379 480 PPVYNFAFIPLIH 492 (585)
Q Consensus 480 Pp~~nf~~~P~V~ 492 (585)
||+|||+|+|+|+
T Consensus 500 pp~~nF~~~p~v~ 512 (514)
T d1v54a_ 500 PPYHTFEEPTYVN 512 (514)
T ss_dssp CCSSCCSSCCEEC
T ss_pred CCCCCCCCCCccC
Confidence 9999999999886
|
| >d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
| >d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
| >d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
| >d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|