Psyllid ID: psy2382
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 527 | 2.2.26 [Sep-21-2011] | |||||||
| Q9JU97 | 363 | 3,4-dihydroxy-2-butanone | yes | N/A | 0.499 | 0.724 | 0.528 | 1e-85 | |
| Q9JZ77 | 363 | 3,4-dihydroxy-2-butanone | yes | N/A | 0.499 | 0.724 | 0.524 | 1e-84 | |
| P51962 | 363 | 3,4-dihydroxy-2-butanone | N/A | N/A | 0.510 | 0.741 | 0.546 | 6e-83 | |
| Q02008 | 364 | 3,4-dihydroxy-2-butanone | N/A | N/A | 0.504 | 0.730 | 0.526 | 1e-78 | |
| Q882G0 | 369 | 3,4-dihydroxy-2-butanone | yes | N/A | 0.451 | 0.644 | 0.537 | 4e-78 | |
| Q9HWX4 | 365 | 3,4-dihydroxy-2-butanone | yes | N/A | 0.497 | 0.717 | 0.488 | 2e-74 | |
| O66679 | 406 | Riboflavin biosynthesis p | yes | N/A | 0.504 | 0.655 | 0.481 | 1e-71 | |
| A0Q3H7 | 414 | Riboflavin biosynthesis p | yes | N/A | 0.523 | 0.666 | 0.483 | 6e-71 | |
| Q0AXM5 | 398 | Riboflavin biosynthesis p | yes | N/A | 0.514 | 0.680 | 0.422 | 9e-66 | |
| B1H0I0 | 403 | Riboflavin biosynthesis p | yes | N/A | 0.518 | 0.677 | 0.421 | 2e-64 |
| >sp|Q9JU97|RIBB_NEIMA 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=ribB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 139/263 (52%), Positives = 203/263 (77%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
IS EI++++K+G M+I+ D+E+RENEGD+++++ FVTP AINFM K+ARGL+C+ +
Sbjct: 4 ISPIPEILADIKVGKMVIITDAEDRENEGDLLMAAQFVTPEAINFMIKHARGLVCLPMDG 63
Query: 66 KHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIV 125
+ +L L MMT+KN + +GTNFTVSIEAA+G+TTGISA+DRA TI+ A S AKP DIV
Sbjct: 64 EMVEKLGLPMMTQKNGAQYGTNFTVSIEAAHGITTGISAADRALTIQTAVSPTAKPEDIV 123
Query: 126 QPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFS 185
QPGHIFPL+A+KGGVL+R GHTEAG DL ++ GL P+AVICEI+NDDGTMAR+P+L+KF+
Sbjct: 124 QPGHIFPLRAQKGGVLVRAGHTEAGVDLAQMNGLIPAAVICEIINDDGTMARMPELMKFA 183
Query: 186 KLHNIKIGTISNLICYRYKYENIIKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGS 245
+ H +KIGTI++LI YR + E++++ + T +G F+ VY+DK++ + HL L+ G+
Sbjct: 184 EEHKLKIGTITDLIEYRSRTESLLEDMGNAPVQTPWGEFQQHVYVDKLSGETHLALVKGT 243
Query: 246 INPNKIIPIWLNQQLSIFDFLHA 268
+ + + +++ S+ DF+ A
Sbjct: 244 PSADTETLVRVHEPFSVMDFIQA 266
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Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587) EC: 4EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 2 |
| >sp|Q9JZ77|RIBB_NEIMB 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Neisseria meningitidis serogroup B (strain MC58) GN=ribB PE=3 SV=1 | Back alignment and function description |
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| >sp|P51962|RIBB_PHOPO 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Photobacterium phosphoreum GN=ribB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q02008|RIBB_PHOLE 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Photobacterium leiognathi GN=ribB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q882G0|RIBB_PSESM 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=ribB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9HWX4|RIBB_PSEAE 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ribB PE=3 SV=1 | Back alignment and function description |
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| >sp|O66679|RIBBA_AQUAE Riboflavin biosynthesis protein RibBA OS=Aquifex aeolicus (strain VF5) GN=ribBA PE=3 SV=1 | Back alignment and function description |
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| >sp|A0Q3H7|RIBBA_CLONN Riboflavin biosynthesis protein RibBA OS=Clostridium novyi (strain NT) GN=ribBA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q0AXM5|RIBBA_SYNWW Riboflavin biosynthesis protein RibBA OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=ribBA PE=3 SV=1 | Back alignment and function description |
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| >sp|B1H0I0|RIBBA_UNCTG Riboflavin biosynthesis protein RibBA OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=ribBA PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 527 | ||||||
| 134094268 | 370 | bifunctional 3,4-dihydroxy-2-butanone 4- | 0.540 | 0.770 | 0.582 | 1e-102 | |
| 152980483 | 370 | bifunctional 3,4-dihydroxy-2-butanone 4- | 0.540 | 0.770 | 0.594 | 1e-102 | |
| 399017470 | 370 | 3,4-dihydroxy-2-butanone 4-phosphate syn | 0.514 | 0.732 | 0.608 | 1e-101 | |
| 409407336 | 373 | GTP cyclohydrolase II/3,4-dihydroxy-2-bu | 0.540 | 0.764 | 0.576 | 1e-99 | |
| 398832211 | 373 | 3,4-dihydroxy-2-butanone 4-phosphate syn | 0.514 | 0.726 | 0.590 | 3e-99 | |
| 415944437 | 373 | Bifunctional riboflavin biosynthesis pro | 0.540 | 0.764 | 0.576 | 4e-99 | |
| 300312881 | 373 | bifunctional GTP cyclohydrolase II/3,4-d | 0.540 | 0.764 | 0.573 | 2e-98 | |
| 445495772 | 373 | riboflavin biosynthesis protein RibBA [J | 0.540 | 0.764 | 0.573 | 3e-98 | |
| 309780819 | 379 | 3,4-dihydroxy-2-butanone 4-phosphate syn | 0.506 | 0.704 | 0.595 | 2e-97 | |
| 187927758 | 379 | bifunctional 3,4-dihydroxy-2-butanone 4- | 0.506 | 0.704 | 0.588 | 4e-97 |
| >gi|134094268|ref|YP_001099343.1| bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein [Herminiimonas arsenicoxydans] gi|133738171|emb|CAL61216.1| Riboflavin biosynthesis protein ribAB [Includes: GTP cyclohydrolase-2 (GTP cyclohydrolase II); 3, 4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)] [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 166/285 (58%), Positives = 227/285 (79%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
IS+T+EI++EL+ G M+ILVD E+RENEGD++L+++FVTP AINFM+K+ RGL+C+TLTE
Sbjct: 3 ISTTQEIVAELRAGRMVILVDEEDRENEGDLVLAAEFVTPEAINFMAKFGRGLVCLTLTE 62
Query: 66 KHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIV 125
+HC QL L MMT +N +S+GTNFTVSIEAA GVTTGISA+DRA TI+VA ++ AKPSDIV
Sbjct: 63 EHCDQLALSMMTSRNGTSYGTNFTVSIEAAEGVTTGISAADRAKTIQVAVARNAKPSDIV 122
Query: 126 QPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFS 185
QPGHIFPL+A+KGGVL+R GHTEAGCD +LAGL P+AVICEI+ DDGTMARLPDLI+F+
Sbjct: 123 QPGHIFPLKAQKGGVLMRAGHTEAGCDFAELAGLVPAAVICEIMKDDGTMARLPDLIEFA 182
Query: 186 KLHNIKIGTISNLICYRYKYENIIKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGS 245
K H++KIGTI++LI YR ++E+I+ R E + T+YG F ++Y DK + HL L++G
Sbjct: 183 KEHDLKIGTIADLIHYRSQHESIVDRVDERTMETVYGTFHAVLYRDKPSGGAHLALVHGD 242
Query: 246 INPNKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLIKN 290
I P++ + ++Q +SI D L + ++ + N S+I I ++ +
Sbjct: 243 IAPDQETLVRVHQPVSILDLLDTRATTHSWNMASAIAAIRQVERG 287
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Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|152980483|ref|YP_001354030.1| bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein [Janthinobacterium sp. Marseille] gi|151280560|gb|ABR88970.1| bifunctional riboflavin biosynthesis protein [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
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| >gi|399017470|ref|ZP_10719662.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase [Herbaspirillum sp. CF444] gi|398103344|gb|EJL93515.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
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| >gi|409407336|ref|ZP_11255787.1| GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase [Herbaspirillum sp. GW103] gi|386433087|gb|EIJ45913.1| GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
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| >gi|398832211|ref|ZP_10590375.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase [Herbaspirillum sp. YR522] gi|398223748|gb|EJN10083.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
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| >gi|415944437|ref|ZP_11556235.1| Bifunctional riboflavin biosynthesis protein [Herbaspirillum frisingense GSF30] gi|407758517|gb|EKF68333.1| Bifunctional riboflavin biosynthesis protein [Herbaspirillum frisingense GSF30] | Back alignment and taxonomy information |
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| >gi|300312881|ref|YP_003776973.1| bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase [Herbaspirillum seropedicae SmR1] gi|300075666|gb|ADJ65065.1| bifunctional enzyme: GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase) protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
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| >gi|445495772|ref|ZP_21462816.1| riboflavin biosynthesis protein RibBA [Janthinobacterium sp. HH01] gi|444791933|gb|ELX13480.1| riboflavin biosynthesis protein RibBA [Janthinobacterium sp. HH01] | Back alignment and taxonomy information |
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| >gi|309780819|ref|ZP_07675560.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase [Ralstonia sp. 5_7_47FAA] gi|404394275|ref|ZP_10986079.1| 3,4-dihydroxy-2-butanone-4-phosphate synthase [Ralstonia sp. 5_2_56FAA] gi|308920501|gb|EFP66157.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase [Ralstonia sp. 5_7_47FAA] gi|348613369|gb|EGY62959.1| 3,4-dihydroxy-2-butanone-4-phosphate synthase [Ralstonia sp. 5_2_56FAA] | Back alignment and taxonomy information |
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| >gi|187927758|ref|YP_001898245.1| bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein [Ralstonia pickettii 12J] gi|187724648|gb|ACD25813.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase [Ralstonia pickettii 12J] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 527 | ||||||
| TIGR_CMR|SO_3467 | 367 | SO_3467 "3,4-dihydroxy-2-butan | 0.497 | 0.713 | 0.556 | 3.5e-75 | |
| UNIPROTKB|Q9KPU3 | 369 | VC_2269 "3,4-dihydroxy-2-butan | 0.504 | 0.720 | 0.528 | 1.4e-71 | |
| TIGR_CMR|VC_2269 | 369 | VC_2269 "3,4-dihydroxy-2-butan | 0.504 | 0.720 | 0.528 | 1.4e-71 | |
| TIGR_CMR|GSU_1690 | 400 | GSU_1690 "3,4-dihydroxy-2-buta | 0.508 | 0.67 | 0.477 | 1.9e-67 | |
| TIGR_CMR|CPS_0732 | 369 | CPS_0732 "3,4-dihydroxy-2-buta | 0.506 | 0.723 | 0.483 | 1.1e-62 | |
| TIGR_CMR|DET_1188 | 403 | DET_1188 "3,4-dihydroxy-2-buta | 0.500 | 0.655 | 0.458 | 1.6e-61 | |
| TIGR_CMR|SPO_1761 | 373 | SPO_1761 "3,4-dihydroxy-2-buta | 0.468 | 0.662 | 0.481 | 1e-59 | |
| TIGR_CMR|CHY_1473 | 401 | CHY_1473 "3,4-dihydroxy-2-buta | 0.504 | 0.663 | 0.430 | 2.2e-57 | |
| TIGR_CMR|BA_4333 | 397 | BA_4333 "3,4-dihydroxy-2-butan | 0.499 | 0.662 | 0.424 | 1.3e-54 | |
| TAIR|locus:2173373 | 543 | GCH "GTP cyclohydrolase II" [A | 0.506 | 0.491 | 0.390 | 1.3e-52 |
| TIGR_CMR|SO_3467 SO_3467 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 147/264 (55%), Positives = 191/264 (72%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
+ S +EII +++ G M+IL+D E+RENEGD+IL+++ VTP AINFM+KY RGLIC T+T+
Sbjct: 3 LHSIEEIIEDIRQGKMVILMDDEDRENEGDLILAAEMVTPEAINFMAKYGRGLICQTMTK 62
Query: 66 KHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIV 125
C QL L +M NN+ F TNFTVSIEAA GVTTGISA DRA T+K A +K AK SD+V
Sbjct: 63 ARCQQLNLPLMVTNNNAQFSTNFTVSIEAAEGVTTGISAHDRAVTVKAAVAKDAKASDLV 122
Query: 126 QPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFS 185
QPGHIFPL A+ GGVL R GHTEAGCDL +LAGL PS VI EILN+DGTMAR PDL FS
Sbjct: 123 QPGHIFPLMAQDGGVLTRAGHTEAGCDLARLAGLEPSGVIVEILNEDGTMARRPDLEIFS 182
Query: 186 KLHNIKIGTISNLICYRYKYENIIKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGS 245
+ H IKIGTI+ LI YR E + R+A+ + T +G F ++ + D I+N +H L+ G
Sbjct: 183 EKHGIKIGTIAALIEYRNTKETTVVREAKCKLPTRFGEFDMVTFRDTIDNQLHFALVKGE 242
Query: 246 INPNKIIPIWLNQQLSIFDFLHAK 269
+ P+ ++ + L + D LH++
Sbjct: 243 VKPDCLVRVHLQNTFN--DLLHSE 264
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| UNIPROTKB|Q9KPU3 VC_2269 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
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| TIGR_CMR|VC_2269 VC_2269 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
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| TIGR_CMR|GSU_1690 GSU_1690 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CPS_0732 CPS_0732 "3,4-dihydroxy-2-butanone-4-phosphate synthase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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| TIGR_CMR|DET_1188 DET_1188 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SPO_1761 SPO_1761 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CHY_1473 CHY_1473 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_4333 BA_4333 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| TAIR|locus:2173373 GCH "GTP cyclohydrolase II" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9JU97 | RIBB_NEIMA | 4, ., 1, ., 9, 9, ., 1, 2 | 0.5285 | 0.4990 | 0.7245 | yes | N/A |
| Q9JZ77 | RIBB_NEIMB | 4, ., 1, ., 9, 9, ., 1, 2 | 0.5247 | 0.4990 | 0.7245 | yes | N/A |
| A7MP95 | RIBB_CROS8 | 4, ., 1, ., 9, 9, ., 1, 2 | 0.5074 | 0.3738 | 0.9078 | yes | N/A |
| Q882G0 | RIBB_PSESM | 4, ., 1, ., 9, 9, ., 1, 2 | 0.5378 | 0.4516 | 0.6449 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 4.1.99.12 | 0.737 |
| 3rd Layer | 4.1.99 | 0.691 |
| 4th Layer | 2.5.1.9 | 0.737 |
| 3rd Layer | 2.5.1 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 527 | |||
| PRK14019 | 367 | PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-b | 1e-158 | |
| PRK12485 | 369 | PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-b | 1e-105 | |
| PRK09311 | 402 | PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-b | 1e-104 | |
| pfam00926 | 193 | pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone | 1e-104 | |
| COG0108 | 203 | COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphat | 1e-103 | |
| PRK09319 | 555 | PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-b | 6e-93 | |
| PRK03353 | 217 | PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phospha | 1e-87 | |
| PLN02831 | 450 | PLN02831, PLN02831, Bifunctional GTP cyclohydrolas | 3e-84 | |
| PRK09314 | 339 | PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-b | 4e-83 | |
| TIGR00506 | 199 | TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosph | 7e-79 | |
| PRK01792 | 214 | PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phospha | 1e-72 | |
| PRK00910 | 218 | PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phospha | 7e-68 | |
| PRK00014 | 230 | PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phospha | 2e-58 | |
| PRK00202 | 137 | PRK00202, nusB, transcription antitermination prot | 2e-37 | |
| TIGR01951 | 129 | TIGR01951, nusB, transcription antitermination fac | 6e-37 | |
| cd09209 | 133 | cd09209, Lumazine_synthase-I, lumazine synthase (6 | 1e-36 | |
| PRK00061 | 154 | PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine syn | 2e-34 | |
| pfam00885 | 144 | pfam00885, DMRL_synthase, 6,7-dimethyl-8-ribityllu | 9e-33 | |
| COG0054 | 152 | COG0054, RibH, Riboflavin synthase beta-chain [Coe | 9e-32 | |
| PRK09318 | 387 | PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-b | 1e-30 | |
| COG0781 | 151 | COG0781, NusB, Transcription termination factor [T | 4e-28 | |
| pfam01029 | 126 | pfam01029, NusB, NusB family | 2e-24 | |
| TIGR00114 | 138 | TIGR00114, lumazine-synth, 6,7-dimethyl-8-ribityll | 7e-24 | |
| cd00619 | 130 | cd00619, Terminator_NusB, Transcription terminatio | 2e-22 | |
| PLN02404 | 141 | PLN02404, PLN02404, 6,7-dimethyl-8-ribityllumazine | 4e-20 | |
| cd08371 | 129 | cd08371, Lumazine_synthase-like, lumazine synthase | 1e-18 | |
| PRK05773 | 219 | PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-pho | 2e-17 | |
| cd00447 | 129 | cd00447, NusB_Sun, RNA binding domain of NusB (N p | 8e-15 | |
| cd09211 | 131 | cd09211, Lumazine_synthase_archaeal, lumazine synt | 1e-10 | |
| cd09208 | 137 | cd09208, Lumazine_synthase-II, lumazine synthase ( | 2e-09 | |
| pfam00925 | 169 | pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II | 1e-08 | |
| PRK12419 | 158 | PRK12419, PRK12419, riboflavin synthase subunit be | 5e-07 | |
| PRK09634 | 207 | PRK09634, nusB, transcription antitermination prot | 2e-04 | |
| PRK14902 | 444 | PRK14902, PRK14902, 16S rRNA methyltransferase B; | 9e-04 | |
| COG0807 | 193 | COG0807, RibA, GTP cyclohydrolase II [Coenzyme met | 0.001 |
| >gnl|CDD|237587 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional | Back alignment and domain information |
|---|
Score = 454 bits (1171), Expect = e-158
Identities = 153/266 (57%), Positives = 208/266 (78%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
++S +EII++++ G M+ILVD E+RENEGD++++++FVTP AINFM+K+ RGLIC+TLTE
Sbjct: 3 LASIEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTE 62
Query: 66 KHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIV 125
+ C QL L +MT +N + +GTNFTVSIEAA GVTTGISA+DRA TI+ A ++ AKP DIV
Sbjct: 63 ERCEQLGLPLMTYRNGTQYGTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDIV 122
Query: 126 QPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFS 185
QPGHIFPL A+ GGVL+R GHTEAGCDL LAGLTP+AVICEI+ DDGTMARLPDL +F+
Sbjct: 123 QPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPAAVICEIMKDDGTMARLPDLEEFA 182
Query: 186 KLHNIKIGTISNLICYRYKYENIIKRKAEYNINTLYGNFKIIVYIDKINNDIHLTLIYGS 245
K H +KIGTI++LI YR + E+I++R AE + T +G F+++ Y DK + HL L+ G+
Sbjct: 183 KEHGLKIGTIADLIHYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLALVKGT 242
Query: 246 INPNKIIPIWLNQQLSIFDFLHAKTS 271
I P++ + +++ LS+ D L
Sbjct: 243 ICPDEETLVRVHEPLSVLDLLEVGQP 268
|
Length = 367 |
| >gnl|CDD|171535 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|181774 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216197 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase | Back alignment and domain information |
|---|
| >gnl|CDD|223186 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|236465 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235119 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215445 PLN02831, PLN02831, Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase | Back alignment and domain information |
|---|
| >gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|232999 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase | Back alignment and domain information |
|---|
| >gnl|CDD|167278 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179162 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|134031 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234686 PRK00202, nusB, transcription antitermination protein NusB; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|233652 TIGR01951, nusB, transcription antitermination factor NusB | Back alignment and domain information |
|---|
| >gnl|CDD|187742 cd09209, Lumazine_synthase-I, lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2); type-I | Back alignment and domain information |
|---|
| >gnl|CDD|234606 PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|201491 pfam00885, DMRL_synthase, 6,7-dimethyl-8-ribityllumazine synthase | Back alignment and domain information |
|---|
| >gnl|CDD|223132 COG0054, RibH, Riboflavin synthase beta-chain [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|236464 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223852 COG0781, NusB, Transcription termination factor [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|216253 pfam01029, NusB, NusB family | Back alignment and domain information |
|---|
| >gnl|CDD|211550 TIGR00114, lumazine-synth, 6,7-dimethyl-8-ribityllumazine synthase | Back alignment and domain information |
|---|
| >gnl|CDD|238342 cd00619, Terminator_NusB, Transcription termination factor NusB (N protein-Utilization Substance B) | Back alignment and domain information |
|---|
| >gnl|CDD|178026 PLN02404, PLN02404, 6,7-dimethyl-8-ribityllumazine synthase | Back alignment and domain information |
|---|
| >gnl|CDD|187740 cd08371, Lumazine_synthase-like, lumazine synthase and riboflavin synthase; involved in the riboflavin (vitamin B2) biosynthetic pathway | Back alignment and domain information |
|---|
| >gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|238253 cd00447, NusB_Sun, RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins | Back alignment and domain information |
|---|
| >gnl|CDD|187744 cd09211, Lumazine_synthase_archaeal, lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS); catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2) | Back alignment and domain information |
|---|
| >gnl|CDD|187741 cd09208, Lumazine_synthase-II, lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2); type-II | Back alignment and domain information |
|---|
| >gnl|CDD|216196 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II | Back alignment and domain information |
|---|
| >gnl|CDD|237096 PRK12419, PRK12419, riboflavin synthase subunit beta; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182007 PRK09634, nusB, transcription antitermination protein NusB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223878 COG0807, RibA, GTP cyclohydrolase II [Coenzyme metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 527 | |||
| PRK09319 | 555 | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate | 100.0 | |
| PRK12485 | 369 | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate | 100.0 | |
| PLN02831 | 450 | Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy- | 100.0 | |
| PRK09311 | 402 | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate | 100.0 | |
| PRK09318 | 387 | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate | 100.0 | |
| PRK14019 | 367 | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate | 100.0 | |
| PRK09314 | 339 | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate | 100.0 | |
| COG0108 | 203 | RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase | 100.0 | |
| PRK08815 | 375 | GTP cyclohydrolase; Provisional | 100.0 | |
| PRK00910 | 218 | ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase | 100.0 | |
| PRK01792 | 214 | ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase | 100.0 | |
| PRK00014 | 230 | ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase | 100.0 | |
| TIGR00506 | 199 | ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase | 100.0 | |
| PF00926 | 194 | DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphat | 100.0 | |
| PRK03353 | 217 | ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase | 100.0 | |
| PRK05773 | 219 | 3,4-dihydroxy-2-butanone 4-phosphate synthase; Val | 100.0 | |
| KOG1284|consensus | 357 | 100.0 | ||
| COG0807 | 193 | RibA GTP cyclohydrolase II [Coenzyme metabolism] | 99.97 | |
| PF00925 | 169 | GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: | 99.96 | |
| PRK00202 | 137 | nusB transcription antitermination protein NusB; R | 99.96 | |
| PF01029 | 134 | NusB: NusB family; InterPro: IPR006027 This domain | 99.95 | |
| COG0781 | 151 | NusB Transcription termination factor [Transcripti | 99.95 | |
| PLN02404 | 141 | 6,7-dimethyl-8-ribityllumazine synthase | 99.95 | |
| TIGR01951 | 129 | nusB transcription antitermination factor NusB. A | 99.95 | |
| cd00619 | 130 | Terminator_NusB Transcription termination factor N | 99.95 | |
| TIGR00114 | 138 | lumazine-synth 6,7-dimethyl-8-ribityllumazine synt | 99.95 | |
| COG0054 | 152 | RibH Riboflavin synthase beta-chain [Coenzyme meta | 99.95 | |
| cd00620 | 126 | Methyltransferase_Sun N-terminal RNA binding domai | 99.94 | |
| PRK12419 | 158 | riboflavin synthase subunit beta; Provisional | 99.94 | |
| PRK00061 | 154 | ribH 6,7-dimethyl-8-ribityllumazine synthase; Prov | 99.94 | |
| PRK00393 | 197 | ribA GTP cyclohydrolase II; Reviewed | 99.94 | |
| PF00885 | 144 | DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synt | 99.93 | |
| TIGR00505 | 191 | ribA GTP cyclohydrolase II. Several members of the | 99.93 | |
| TIGR01506 | 151 | ribC_arch riboflavin synthase. This archaeal prote | 99.92 | |
| KOG3243|consensus | 158 | 99.92 | ||
| cd00641 | 193 | GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP | 99.9 | |
| cd00447 | 129 | NusB_Sun RNA binding domain of NusB (N protein-Uti | 99.9 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.88 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.88 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.87 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.87 | |
| PRK09634 | 207 | nusB transcription antitermination protein NusB; P | 99.86 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.84 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.81 | |
| PRK07198 | 418 | hypothetical protein; Validated | 99.77 | |
| PRK06455 | 155 | riboflavin synthase; Provisional | 99.65 | |
| COG1731 | 154 | Archaeal riboflavin synthase [Coenzyme metabolism] | 97.25 | |
| KOG1284|consensus | 357 | 96.1 |
| >PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-99 Score=803.41 Aligned_cols=364 Identities=35% Similarity=0.555 Sum_probs=348.6
Q ss_pred ccccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCC
Q psy2382 3 NKFISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNS 82 (527)
Q Consensus 3 ~~~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~ 82 (527)
++.+++|++||++||+|+||||+||++||||||||+|||++|++.|+||++|++|++|++|+++||++|+||+|+..|++
T Consensus 2 ~~~~~~Ie~Ai~aLr~G~~VvV~Dde~REnEgDLV~aAE~~T~e~infm~r~a~GliClamt~~ra~~L~Lp~Mv~~n~~ 81 (555)
T PRK09319 2 KIEFDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERLDELDLPLMVDRNTD 81 (555)
T ss_pred CCCcccHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHhcCCCeeeccCHHHHhhcCCCcccccCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEeEecc--CCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCC
Q psy2382 83 SFGTNFTVSIEAA--NGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLT 160 (527)
Q Consensus 83 ~~~~~f~vsvd~~--~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~ 160 (527)
+++++||||||++ .|++|||||.|||+||+.||||+++|.||++|||||||++++|||+.|+|||||||||||||||.
T Consensus 82 ~~~taFtVsVDa~~~~g~tTGISA~DRa~TIr~ladp~~~~~Df~rPGHvfPL~A~~GGvl~R~GHTEAAVDLarLAGL~ 161 (555)
T PRK09319 82 SNQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLY 161 (555)
T ss_pred CCCceEEEEEeccccCCCCCCcCHHHHHHHHHHHhCCCCChhhcCCCCCccceeeccCCCCCCCChHHHHHHHHHHcCCC
Confidence 9999999999987 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhchhhhhhhccccccCCcccEEEEEEeeCCCCcEEEE
Q psy2382 161 PSAVICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYENIIKRKAEYNINTLYGNFKIIVYIDKINNDIHLT 240 (527)
Q Consensus 161 Paavi~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e~~v~~~~~~~lpt~~G~f~~~~y~~~~~~~eh~a 240 (527)
||+|||||+++||+||+++++.+||++|+||+|+++||++||..+|++|++++++++||.||+|++++|++..++.||+|
T Consensus 162 PaaVicEi~~~dG~mar~~~l~~fA~~h~L~iisi~dLi~yR~~~e~~V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHvA 241 (555)
T PRK09319 162 PAGVICEIQNPDGSMARLPELKEYAKQHGLKLISIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHVA 241 (555)
T ss_pred ceEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEhHHhHHHHhhccccceEEEEEeeecCCccEEEEEEEeCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCC--CCCccEEEcccCcchhhccCCCCCCCCCChhHHHHHHHHHhccccccc---eeeecCCC-ccccHHHHHH
Q psy2382 241 LIYGSINP--NKIIPIWLNQQLSIFDFLHAKTSSCTQNNISSIMKIMKLIKNGAQEKN---ILHISVPG-ALEIPLALKN 314 (527)
Q Consensus 241 lv~G~~~~--~~~~lvRvHsec~tgDvfgs~~cdc~~~~~~qL~~aL~~i~~~~~g~G---~l~~~vpG-~le~p~~a~~ 314 (527)
|++|+++. ++||||||||+|+|||+|||++|||+ +||+.||++|++ +|.| |+.|+++| ++.+++.+|.
T Consensus 242 LvkGd~~~~~~~pvLVRVHSeClTGDvfgS~rCDCg----~QL~~AL~~Ia~--eG~GVlVYLrqEGRGiGL~nKl~aY~ 315 (555)
T PRK09319 242 LVKGDPANFKDEPVLVRMHSECLTGDAFGSLRCDCR----MQLEAALKMIEN--EGEGVVVYLRQEGRGIGLINKLKAYS 315 (555)
T ss_pred EEcCCcccccCCCceEEEeccCcHHHHhcCCCCCCH----HHHHHHHHHHHh--cCCEEEEEeCCCCcchhHHHHHHHHh
Confidence 99999963 57999999999999999999999999 999999999999 9989 78888899 8999999999
Q ss_pred hhhc--CCccEEEEeeceeeCCCchhHHHHHHHH-HHHHHHhhhhCCCceeeecccCcHHHHHHhhhhhhhc
Q psy2382 315 IIQI--KKFNVLIAIGVIIRGETYHFELIANETI-SNIMQISIKNNIPIINAILTTETIEQANSRILTKVNL 383 (527)
Q Consensus 315 l~~~--~~~da~i~lG~vi~g~t~h~~~v~~~~~-~gl~~~~l~~~~Pv~~gvlt~~~~~qa~~r~g~~~~~ 383 (527)
+|+. +++||+..||+.. |.+.|.+.|+++. .||.+|.|.|||| .+..+++..|+++-+
T Consensus 316 LQd~G~DTveAn~~lG~~~--D~RdYgigAQIL~dLGI~kIrLLTNNP---------~Ki~~L~~~GIeVv~ 376 (555)
T PRK09319 316 LQDGGLDTVEANERLGFPA--DLRNYGVGAQILNDLGIKRLRLITNNP---------RKIAGLGGYGLEVVD 376 (555)
T ss_pred hhhcCCChhhhhhhcCCcc--cceehhHHHHHHHHcCCCEEEECCCCH---------HHHHHHHhCCCEEEE
Confidence 9886 5888889999966 7899998888885 6999999999999 688999999999654
|
|
| >PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional | Back alignment and domain information |
|---|
| >PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase | Back alignment and domain information |
|---|
| >PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional | Back alignment and domain information |
|---|
| >PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional | Back alignment and domain information |
|---|
| >PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional | Back alignment and domain information |
|---|
| >COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK08815 GTP cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional | Back alignment and domain information |
|---|
| >PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional | Back alignment and domain information |
|---|
| >PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional | Back alignment and domain information |
|---|
| >TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase | Back alignment and domain information |
|---|
| >PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4 | Back alignment and domain information |
|---|
| >PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional | Back alignment and domain information |
|---|
| >PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated | Back alignment and domain information |
|---|
| >KOG1284|consensus | Back alignment and domain information |
|---|
| >COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin | Back alignment and domain information |
|---|
| >PRK00202 nusB transcription antitermination protein NusB; Reviewed | Back alignment and domain information |
|---|
| >PF01029 NusB: NusB family; InterPro: IPR006027 This domain is found in a number of functionally different proteins: NusB a prokaryotic transcription factor involved in antitermination TIM44, the mitochondrial inner membrane translocase subunit RsmB, the 16S rRNA m5C967 methyltransferase NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site | Back alignment and domain information |
|---|
| >COG0781 NusB Transcription termination factor [Transcription] | Back alignment and domain information |
|---|
| >PLN02404 6,7-dimethyl-8-ribityllumazine synthase | Back alignment and domain information |
|---|
| >TIGR01951 nusB transcription antitermination factor NusB | Back alignment and domain information |
|---|
| >cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B) | Back alignment and domain information |
|---|
| >TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase | Back alignment and domain information |
|---|
| >COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun | Back alignment and domain information |
|---|
| >PRK12419 riboflavin synthase subunit beta; Provisional | Back alignment and domain information |
|---|
| >PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional | Back alignment and domain information |
|---|
| >PRK00393 ribA GTP cyclohydrolase II; Reviewed | Back alignment and domain information |
|---|
| >PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: |
Back alignment and domain information |
|---|
| >TIGR00505 ribA GTP cyclohydrolase II | Back alignment and domain information |
|---|
| >TIGR01506 ribC_arch riboflavin synthase | Back alignment and domain information |
|---|
| >KOG3243|consensus | Back alignment and domain information |
|---|
| >cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA) | Back alignment and domain information |
|---|
| >cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins | Back alignment and domain information |
|---|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
| >PRK09634 nusB transcription antitermination protein NusB; Provisional | Back alignment and domain information |
|---|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
| >PRK07198 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK06455 riboflavin synthase; Provisional | Back alignment and domain information |
|---|
| >COG1731 Archaeal riboflavin synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >KOG1284|consensus | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 527 | ||||
| 1g57_A | 217 | Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho | 5e-56 | ||
| 1iez_A | 217 | Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Ph | 6e-56 | ||
| 3lqu_A | 217 | Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho | 8e-56 | ||
| 3h07_A | 220 | Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho | 8e-51 | ||
| 3mgz_A | 206 | Crystal Structure Of Dhbps Domain Of Bi-Functional | 9e-46 | ||
| 3mk5_A | 212 | Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho | 1e-45 | ||
| 1tks_A | 204 | Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho | 5e-43 | ||
| 1k49_A | 233 | Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho | 1e-36 | ||
| 1pvw_A | 227 | 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From | 3e-21 | ||
| 1pvy_A | 227 | 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From | 5e-20 | ||
| 3d3b_A | 141 | Structural And Functional Analysis Of The E. Coli N | 3e-18 | ||
| 1ey1_A | 139 | Solution Structure Of Escherichia Coli Nusb Length | 5e-18 | ||
| 3imq_A | 141 | Crystal Structure Of The Nusb101-S10(Delta Loop) Co | 2e-17 | ||
| 1vsw_A | 153 | Crystal Structure Of Lumazine Synthase From Bacillu | 1e-15 | ||
| 1rvv_A | 154 | SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUB | 1e-13 | ||
| 1hqk_A | 154 | Crystal Structure Analysis Of Lumazine Synthase Fro | 1e-12 | ||
| 3mk3_A | 156 | Crystal Structure Of Lumazine Synthase From Salmone | 2e-12 | ||
| 2jfb_A | 164 | 3d Structure Of Lumazine Synthase From Candida Albi | 4e-12 | ||
| 4gef_A | 179 | Product Complex Of Lumazine Synthase From Candida G | 6e-12 | ||
| 1ejb_A | 168 | Lumazine Synthase From Saccharomyces Cerevisiae Len | 3e-11 | ||
| 2o6h_A | 157 | Lumazine Synthase Ribh1 From Brucella Melitensis (g | 3e-11 | ||
| 2f59_A | 157 | Lumazine Synthase Ribh1 From Brucella Abortus (gene | 3e-11 | ||
| 1c41_A | 200 | Crystal Structures Of A Pentameric Fungal And An Ic | 1e-10 | ||
| 1tzt_A | 142 | T. Maritima Nusb, P21 Length = 142 | 6e-10 | ||
| 1kz9_A | 159 | Mutant Enzyme L119f Lumazine Synthase From S.pombe | 1e-09 | ||
| 1kz6_A | 159 | Mutant Enzyme W63y/l119f Lumazine Synthase From S.p | 1e-09 | ||
| 1kyv_A | 159 | Lumazine Synthase From S.pombe Bound To Riboflavin | 2e-09 | ||
| 1kz4_A | 159 | Mutant Enzyme W63y Lumazine Synthase From S.pombe L | 2e-09 | ||
| 1kz1_A | 159 | Mutant Enzyme W27g Lumazine Synthase From S.pombe L | 2e-09 | ||
| 2a57_A | 159 | Structure Of 6,7-dimthyl-8-ribityllumazine Synthase | 2e-09 | ||
| 1w19_A | 160 | Lumazine Synthase From Mycobacterium Tuberculosis B | 2e-09 | ||
| 1c2y_A | 156 | Crystal Structures Of A Pentameric Fungal And An Ic | 1e-06 | ||
| 1t13_A | 158 | Crystal Structure Of Lumazine Synthase From Brucell | 1e-06 | ||
| 1di0_A | 158 | Crystal Structure Of Lumazine Synthase From Brucell | 2e-06 | ||
| 2obx_A | 157 | Lumazine Synthase Ribh2 From Mesorhizobium Loti (ge | 2e-06 |
| >pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Length = 217 | Back alignment and structure |
|
| >pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Of Riboflavin Biosynthesis Length = 217 | Back alignment and structure |
| >pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Complexed With Ribulose-5 Phosphate Length = 217 | Back alignment and structure |
| >pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From Yersinia Pestis Co92 Length = 220 | Back alignment and structure |
| >pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional DhbpsGTP Cyclohydrolase Ii From Mycobacterium Tuberculosis At Ph 4.0 Length = 206 | Back alignment and structure |
| >pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Domain From Mycobacterium Tuberculosis With Sulfate And Zinc At Ph 4.00 Length = 212 | Back alignment and structure |
| >pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Of Candida Albicans Length = 204 | Back alignment and structure |
| >pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase (Cation Free Form) Length = 233 | Back alignment and structure |
| >pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M. Jannaschii Length = 227 | Back alignment and structure |
| >pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M. Jannaschii In Complex With Ribulose 5-Phosphate Length = 227 | Back alignment and structure |
| >pdb|3D3B|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-s10 Transcription Antitermination Complex. Length = 141 | Back alignment and structure |
| >pdb|1EY1|A Chain A, Solution Structure Of Escherichia Coli Nusb Length = 139 | Back alignment and structure |
| >pdb|3IMQ|A Chain A, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex Length = 141 | Back alignment and structure |
| >pdb|1VSW|A Chain A, Crystal Structure Of Lumazine Synthase From Bacillus Anthracis Length = 153 | Back alignment and structure |
| >pdb|1RVV|A Chain A, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS Length = 154 | Back alignment and structure |
| >pdb|1HQK|A Chain A, Crystal Structure Analysis Of Lumazine Synthase From Aquifex Aeolicus Length = 154 | Back alignment and structure |
| >pdb|3MK3|A Chain A, Crystal Structure Of Lumazine Synthase From Salmonella Typhimurium Lt2 Length = 156 | Back alignment and structure |
| >pdb|2JFB|A Chain A, 3d Structure Of Lumazine Synthase From Candida Albicans Length = 164 | Back alignment and structure |
| >pdb|4GEF|A Chain A, Product Complex Of Lumazine Synthase From Candida Glabrata Length = 179 | Back alignment and structure |
| >pdb|1EJB|A Chain A, Lumazine Synthase From Saccharomyces Cerevisiae Length = 168 | Back alignment and structure |
| >pdb|2O6H|A Chain A, Lumazine Synthase Ribh1 From Brucella Melitensis (gene Bmei1187, Swiss-prot Entry Q8ygh2) Complexed With Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h) Pyrimidinedione Length = 157 | Back alignment and structure |
| >pdb|2F59|A Chain A, Lumazine Synthase Ribh1 From Brucella Abortus (gene Bruab1_0785, Swiss-prot Entry Q57dy1) Complexed With Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h) Pyrimidinedione Length = 157 | Back alignment and structure |
| >pdb|1C41|A Chain A, Crystal Structures Of A Pentameric Fungal And An Icosahedral Plant Lumazine Synthase Reveals The Structural Basis For Differences In Assembly Length = 200 | Back alignment and structure |
| >pdb|1TZT|A Chain A, T. Maritima Nusb, P21 Length = 142 | Back alignment and structure |
| >pdb|1KZ9|A Chain A, Mutant Enzyme L119f Lumazine Synthase From S.pombe Length = 159 | Back alignment and structure |
| >pdb|1KZ6|A Chain A, Mutant Enzyme W63y/l119f Lumazine Synthase From S.pombe Length = 159 | Back alignment and structure |
| >pdb|1KYV|A Chain A, Lumazine Synthase From S.pombe Bound To Riboflavin Length = 159 | Back alignment and structure |
| >pdb|1KZ4|A Chain A, Mutant Enzyme W63y Lumazine Synthase From S.pombe Length = 159 | Back alignment and structure |
| >pdb|1KZ1|A Chain A, Mutant Enzyme W27g Lumazine Synthase From S.pombe Length = 159 | Back alignment and structure |
| >pdb|2A57|A Chain A, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From Schizosaccharomyces Pombe Mutant W27y With Bound Ligand 6- Carboxyethyl-7-oxo-8-ribityllumazine Length = 159 | Back alignment and structure |
| >pdb|1W19|A Chain A, Lumazine Synthase From Mycobacterium Tuberculosis Bound To 3-(1,3,7-Trihydro-9-D-Ribityl-2,6,8-Purinetrione-7-Yl) Propane 1-Phosphate Length = 160 | Back alignment and structure |
| >pdb|1C2Y|A Chain A, Crystal Structures Of A Pentameric Fungal And An Icosahedral Plant Lumazine Synthase Reveals The Structural Basis For Differences In Assembly Length = 156 | Back alignment and structure |
| >pdb|1T13|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella Abortus Bound To 5-nitro-6-(d-ribitylamino)-2,4(1h,3h) Pyrimidinedione Length = 158 | Back alignment and structure |
| >pdb|1DI0|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella Abortus Length = 158 | Back alignment and structure |
| >pdb|2OBX|A Chain A, Lumazine Synthase Ribh2 From Mesorhizobium Loti (gene Mll7281, Swiss- Prot Entry Q986n2) Complexed With Inhibitor 5-nitro-6-(d- Ribitylamino)-2,4(1h,3h) Pyrimidinedione Length = 157 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A Length = 217 | Back alignment and structure |
|---|
Score = 382 bits (983), Expect = e-132
Identities = 94/204 (46%), Positives = 139/204 (68%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
+ ++ L+ G ++++D E+RENEGD+I ++ +T + ++ G++C+ +TE
Sbjct: 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 66 KHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIV 125
QL L MM + N S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+
Sbjct: 73 DRRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLN 132
Query: 126 QPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFS 185
+PGH+FPL+A+ GGVL RGGHTEA DL LAG P+ V+CE+ NDDGTMAR P+ I+F+
Sbjct: 133 RPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFA 192
Query: 186 KLHNIKIGTISNLICYRYKYENII 209
HN+ + TI +L+ YR +E
Sbjct: 193 NKHNMALVTIEDLVAYRQAHERKA 216
|
| >3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} PDB: 3mgz_A 3mk5_A Length = 206 | Back alignment and structure |
|---|
| >1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Length = 204 | Back alignment and structure |
|---|
| >1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A Length = 233 | Back alignment and structure |
|---|
| >1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A Length = 227 | Back alignment and structure |
|---|
| >3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A Length = 141 | Back alignment and structure |
|---|
| >1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1 Length = 156 | Back alignment and structure |
|---|
| >1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A* Length = 142 | Back alignment and structure |
|---|
| >1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A Length = 158 | Back alignment and structure |
|---|
| >3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* Length = 149 | Back alignment and structure |
|---|
| >1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A Length = 154 | Back alignment and structure |
|---|
| >2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti} Length = 157 | Back alignment and structure |
|---|
| >1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A Length = 159 | Back alignment and structure |
|---|
| >1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A* Length = 154 | Back alignment and structure |
|---|
| >3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A Length = 156 | Back alignment and structure |
|---|
| >1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1 Length = 156 | Back alignment and structure |
|---|
| >1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A Length = 168 | Back alignment and structure |
|---|
| >2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A* Length = 157 | Back alignment and structure |
|---|
| >2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A* Length = 160 | Back alignment and structure |
|---|
| >1c41_A Lumazine synthase; riboflavin biosynthesis, transferase; HET: LMZ; 3.10A {Magnaporthe grisea} SCOP: c.16.1.1 Length = 200 | Back alignment and structure |
|---|
| >2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A* Length = 156 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429 | Back alignment and structure |
|---|
| >2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A Length = 196 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 527 | |||
| 1tks_A | 204 | 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib | 100.0 | |
| 3mio_A | 206 | DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat | 100.0 | |
| 1k4i_A | 233 | 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib | 100.0 | |
| 1snn_A | 227 | DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat | 100.0 | |
| 1g57_A | 217 | DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat | 100.0 | |
| 2bz1_A | 196 | GTP cyclohydrolase II; riboflavin biosynthesis, ca | 100.0 | |
| 3d3b_A | 141 | Protein NUSB, N utilization substance protein B; N | 99.97 | |
| 1tzv_A | 142 | NUSB protein, N utilization substance protein B ho | 99.97 | |
| 3r2d_A | 149 | Protein NUSB, N utilization substance protein B; c | 99.97 | |
| 1eyv_A | 156 | NUSB protein, N-utilizing substance protein B homo | 99.95 | |
| 2i0f_A | 157 | 6,7-dimethyl-8-ribityllumazine synthase 1; lumazin | 99.95 | |
| 3nq4_A | 156 | 6,7-dimethyl-8-ribityllumazine synthase; 30MER, ic | 99.95 | |
| 1rvv_A | 154 | Riboflavin synthase; transferase, flavoprotein; HE | 99.95 | |
| 1hqk_A | 154 | 6,7-dimethyl-8-ribityllumazine synthase; analysi s | 99.95 | |
| 1c2y_A | 156 | Protein (lumazine synthase); riboflavin biosynthes | 99.95 | |
| 1kz1_A | 159 | 6,7-dimethyl-8-ribityllumazine synthase; riboflavi | 99.95 | |
| 1ejb_A | 168 | Lumazine synthase; analysis, inhibitor complex, vi | 99.95 | |
| 1di0_A | 158 | Lumazine synthase; transferase; 2.70A {Brucella ab | 99.94 | |
| 2obx_A | 157 | DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine sy | 99.94 | |
| 2c92_A | 160 | 6,7-dimethyl-8-ribityllumazine synthase; transfera | 99.94 | |
| 1c41_A | 200 | Lumazine synthase; riboflavin biosynthesis, transf | 99.88 | |
| 2b99_A | 156 | Riboflavin synthase; lumazine riboflavin, transfer | 99.9 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.83 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.83 | |
| 1q8c_A | 151 | Hypothetical protein Mg027; structural genomics, N | 84.36 |
| >1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-74 Score=547.84 Aligned_cols=199 Identities=41% Similarity=0.737 Sum_probs=190.6
Q ss_pred ccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCC
Q psy2382 5 FISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSF 84 (527)
Q Consensus 5 ~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~ 84 (527)
++++||+||++||+|+||||+||++||||||||+|||++||+.|+||++|++|++|++|++++|++|+||+|+..|++++
T Consensus 4 ~~~~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~~~GliC~~lt~~~~~~L~Lp~mv~~n~~~~ 83 (204)
T 1tks_A 4 IFTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLANRSDRH 83 (204)
T ss_dssp CSCCHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHHHTBCSCCEEEEEHHHHHHTTCCBSCC------
T ss_pred chhhHHHHHHHHHCCCeEEEEeCCCCCCCEEEEEEhhhCCHHHHHHHHHhCCCcEEEEcCHHHHhhCCCchhccccCCCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEE
Q psy2382 85 GTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAV 164 (527)
Q Consensus 85 ~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paav 164 (527)
+|+||||||+++|++|||||.||+.||+.|++|+++|+||++|||||||++++|||++|+|||||||||||||||.|++|
T Consensus 84 ~taFtVsVda~~g~tTGISA~DRa~Ti~~l~~~~~~p~df~rPGHvfPL~A~~gGvl~R~GHTEAavdLarLAGl~Pa~v 163 (204)
T 1tks_A 84 GTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGV 163 (204)
T ss_dssp CCCBBCCEEESTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEEECTTGGGTCCCHHHHHHHHHHHTTSCSBEE
T ss_pred CCCeEEEEeccCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCcceeeecCCCCccCCCcHHHHHHHHHHcCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe-CCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHH
Q psy2382 165 ICEIL-NDDGTMARLPDLIKFSKLHNIKIGTISNLICYRY 203 (527)
Q Consensus 165 i~ei~-~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~ 203 (527)
||||+ ++||+|++.+++.+||++|+||+++|+||++||.
T Consensus 164 icEi~~~~dG~mar~~~l~~fA~~h~l~iiti~dLi~yr~ 203 (204)
T 1tks_A 164 ICELVRDEDGLMMRLDDCIQFGKKHGIKIININQLVEYIS 203 (204)
T ss_dssp EEEBBCTTTCCBCBHHHHHHHHHHHTCCEEEHHHHHHHHC
T ss_pred EEEEeECCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHh
Confidence 99999 8999999999999999999999999999999985
|
| >3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A | Back alignment and structure |
|---|
| >1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A | Back alignment and structure |
|---|
| >1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A | Back alignment and structure |
|---|
| >1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A | Back alignment and structure |
|---|
| >2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A | Back alignment and structure |
|---|
| >3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A | Back alignment and structure |
|---|
| >1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A* | Back alignment and structure |
|---|
| >3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A | Back alignment and structure |
|---|
| >1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1 | Back alignment and structure |
|---|
| >2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A* | Back alignment and structure |
|---|
| >3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A | Back alignment and structure |
|---|
| >1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A | Back alignment and structure |
|---|
| >1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A* | Back alignment and structure |
|---|
| >1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1 | Back alignment and structure |
|---|
| >1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A | Back alignment and structure |
|---|
| >1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A | Back alignment and structure |
|---|
| >1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A | Back alignment and structure |
|---|
| >2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti} | Back alignment and structure |
|---|
| >2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A* | Back alignment and structure |
|---|
| >1c41_A Lumazine synthase; riboflavin biosynthesis, transferase; HET: LMZ; 3.10A {Magnaporthe grisea} SCOP: c.16.1.1 | Back alignment and structure |
|---|
| >2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A* | Back alignment and structure |
|---|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >1q8c_A Hypothetical protein Mg027; structural genomics, NUSB, GI 3 BSGC structure funded by NIH, protein structure initiative; 2.00A {Mycoplasma genitalium} SCOP: a.79.1.2 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 527 | ||||
| d1g57a_ | 209 | d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat | 8e-70 | |
| d1snna_ | 219 | d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat | 2e-68 | |
| d1tksa_ | 202 | d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat | 2e-66 | |
| d1k4ia_ | 216 | d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat | 3e-63 | |
| d1ey1a_ | 139 | a.79.1.1 (A:) Antitermination factor NusB {Escheri | 5e-24 | |
| d1tzva_ | 141 | a.79.1.1 (A:) Antitermination factor NusB {Thermot | 3e-21 | |
| d1eyva_ | 131 | a.79.1.1 (A:) Antitermination factor NusB {Mycobac | 8e-21 | |
| d1c41a_ | 195 | c.16.1.1 (A:) Lumazine synthase {Rice blast fungus | 2e-18 | |
| d1kz1a_ | 150 | c.16.1.1 (A:) Lumazine synthase {Fission yeast (Sc | 5e-18 | |
| d1di0a_ | 148 | c.16.1.1 (A:) Lumazine synthase {Brucella abortus | 7e-18 | |
| d1ejba_ | 168 | c.16.1.1 (A:) Lumazine synthase {Baker's yeast (Sa | 6e-17 | |
| d1rvv1_ | 154 | c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis | 2e-16 | |
| d1sqga1 | 140 | a.79.1.3 (A:5-144) Ribosomal RNA small subunit met | 9e-16 | |
| d1nqua_ | 154 | c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus | 2e-15 | |
| d1c2ya_ | 155 | c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia | 3e-15 | |
| d2bz1a1 | 174 | c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {E | 8e-07 |
| >d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: YrdC/RibB superfamily: YrdC/RibB family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB domain: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB species: Escherichia coli [TaxId: 562]
Score = 220 bits (562), Expect = 8e-70
Identities = 94/201 (46%), Positives = 139/201 (69%)
Query: 6 ISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTE 65
+ ++ L+ G ++++D E+RENEGD+I ++ +T + ++ G++C+ +TE
Sbjct: 9 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 68
Query: 66 KHCIQLKLDMMTKKNNSSFGTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIV 125
QL L MM + N S++GT FTV+IEAA GVTTG+SA+DR T++ A + AKPSD+
Sbjct: 69 DRRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLN 128
Query: 126 QPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAVICEILNDDGTMARLPDLIKFS 185
+PGH+FPL+A+ GGVL RGGHTEA DL LAG P+ V+CE+ NDDGTMAR P+ I+F+
Sbjct: 129 RPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFA 188
Query: 186 KLHNIKIGTISNLICYRYKYE 206
HN+ + TI +L+ YR +E
Sbjct: 189 NKHNMALVTIEDLVAYRQAHE 209
|
| >d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 219 | Back information, alignment and structure |
|---|
| >d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]} Length = 202 | Back information, alignment and structure |
|---|
| >d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]} Length = 216 | Back information, alignment and structure |
|---|
| >d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]} Length = 139 | Back information, alignment and structure |
|---|
| >d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]} Length = 141 | Back information, alignment and structure |
|---|
| >d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 131 | Back information, alignment and structure |
|---|
| >d1c41a_ c.16.1.1 (A:) Lumazine synthase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 195 | Back information, alignment and structure |
|---|
| >d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 150 | Back information, alignment and structure |
|---|
| >d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]} Length = 148 | Back information, alignment and structure |
|---|
| >d1ejba_ c.16.1.1 (A:) Lumazine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168 | Back information, alignment and structure |
|---|
| >d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId: 1423]} Length = 154 | Back information, alignment and structure |
|---|
| >d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 140 | Back information, alignment and structure |
|---|
| >d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]} Length = 154 | Back information, alignment and structure |
|---|
| >d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 155 | Back information, alignment and structure |
|---|
| >d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]} Length = 174 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 527 | |||
| d1g57a_ | 209 | 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB | 100.0 | |
| d1tksa_ | 202 | 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB | 100.0 | |
| d1k4ia_ | 216 | 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB | 100.0 | |
| d1snna_ | 219 | 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB | 100.0 | |
| d1ey1a_ | 139 | Antitermination factor NusB {Escherichia coli [Tax | 99.97 | |
| d1tzva_ | 141 | Antitermination factor NusB {Thermotoga maritima [ | 99.95 | |
| d1c2ya_ | 155 | Lumazine synthase {Spinach (Spinacia oleracea) [Ta | 99.94 | |
| d1di0a_ | 148 | Lumazine synthase {Brucella abortus [TaxId: 235]} | 99.94 | |
| d1eyva_ | 131 | Antitermination factor NusB {Mycobacterium tubercu | 99.94 | |
| d1nqua_ | 154 | Lumazine synthase {Aquifex aeolicus [TaxId: 63363] | 99.94 | |
| d2bz1a1 | 174 | GTP cyclohydrolase II, RibA {Escherichia coli [Tax | 99.94 | |
| d1rvv1_ | 154 | Lumazine synthase {Bacillus subtilis [TaxId: 1423] | 99.94 | |
| d1kz1a_ | 150 | Lumazine synthase {Fission yeast (Schizosaccharomy | 99.94 | |
| d1ejba_ | 168 | Lumazine synthase {Baker's yeast (Saccharomyces ce | 99.93 | |
| d1sqga1 | 140 | Ribosomal RNA small subunit methyltransferase B, R | 99.93 | |
| d1c41a_ | 195 | Lumazine synthase {Rice blast fungus (Magnaporthe | 99.93 |
| >d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: YrdC/RibB superfamily: YrdC/RibB family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB domain: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-69 Score=517.53 Aligned_cols=202 Identities=47% Similarity=0.811 Sum_probs=195.0
Q ss_pred ccccHHHHHHHHHcCCeEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhCCCcEEEecCHHHHHHcCCCccccccCCCC
Q psy2382 5 FISSTKEIISELKIGNMIILVDSENRENEGDIILSSDFVTPNAINFMSKYARGLICMTLTEKHCIQLKLDMMTKKNNSSF 84 (527)
Q Consensus 5 ~~~~v~~ai~~lr~G~~Vvv~D~~~re~e~dlv~aAe~~t~~~~~f~~~~~~G~~c~~l~~~~~~~L~l~~m~~~~~~~~ 84 (527)
++++|++||++||+|+||||+||++||||||||++||.+|++.|+||++|++|++|+++++++|++||||+|+..|.+++
T Consensus 8 ~~~~ie~ai~alk~G~~Viv~Dd~~RE~EgDlv~~Ae~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~~~~~~ 87 (209)
T d1g57a_ 8 PFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAY 87 (209)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSSCCCTT
T ss_pred chhhHHHHHHHHHCCCEEEEEECCCCCCcccEEEEHHHCCHHHHHHHHHhCCCCEEEcccHHHHhcCCCCCccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeEeccCCCCCCCChhhhHHHHHHHhcCCCCCCCccCCCCCcccccccCCccccCChhHHHHHHHHHhCCCCcEE
Q psy2382 85 GTNFTVSIEAANGVTTGISASDRAHTIKVASSKKAKPSDIVQPGHIFPLQAKKGGVLIRGGHTEAGCDLTKLAGLTPSAV 164 (527)
Q Consensus 85 ~~~f~vsvd~~~g~~TGisa~dRa~ti~~la~~~~~~~d~~~PGhv~pl~a~~ggv~~r~ghtEaav~L~rlAgl~Paav 164 (527)
+++|+||||+++|++|||||.|||.||+.|++++++|+||++|||||||++++|||++|+||||||||||+|||+.|++|
T Consensus 88 ~~~ftvsvd~~~g~tTGISa~dRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~gGv~~R~GHTEaavdL~~lAGl~P~av 167 (209)
T d1g57a_ 88 GTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGV 167 (209)
T ss_dssp CCCBBSCEEESSSCSSSCSHHHHHHHHHHHHSTTCCGGGEEEEEEEEEEECCTTGGGTCCSHHHHHHHHHHHTTSCSCEE
T ss_pred CCcceEEEEecCCccccccHHHHHHHHHHhhccCCCHHHhcCCceeceeeeccCCccccchHHHHHHHHHHhcCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcCCChhHHHHHHHhcCCcEEehhcHHHHHHhch
Q psy2382 165 ICEILNDDGTMARLPDLIKFSKLHNIKIGTISNLICYRYKYE 206 (527)
Q Consensus 165 i~ei~~~~g~~~~~~~~~~~A~~~~l~~v~~~dl~~~~~~~e 206 (527)
||||++++|+|++.+++++||++|+||+|+++||++||+++|
T Consensus 168 i~Eil~~dG~~~~~~~~~~fA~~~~l~~isi~dli~yr~~~e 209 (209)
T d1g57a_ 168 LCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHE 209 (209)
T ss_dssp EEEBBCTTSSBCCHHHHHHHHHHTTCEEEEHHHHHHHHHHHC
T ss_pred EEEEecCCCcccCHHHHHHHHHHcCCCEEEHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998765
|
| >d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]} | Back information, alignment and structure |
|---|
| >d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]} | Back information, alignment and structure |
|---|
| >d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
| >d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]} | Back information, alignment and structure |
|---|
| >d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1ejba_ c.16.1.1 (A:) Lumazine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1c41a_ c.16.1.1 (A:) Lumazine synthase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|