Psyllid ID: psy2389

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHEHHHcccc
Coil and Loop (DISEMBL)
MSDCLIFSSLFAIYAVLGhnyaegptaiqifklPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELInrnfgpwrsAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS
Flexible Loop (DISEMBL)
MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS
Low Complexity Region (SEG)
MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIIlllsslsCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGlhiifgiiwlitlilQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS
Disordered region (IsUnstruct)
***CLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGT**
Disordered Region (DISOPRED)
MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS
Disordered Region (DISEMBL)
MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS
Disordered Region (DISPRO)
*SDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q9I425	209	Cytochrome o ubiquinol ox	yes	N/A	0.994	0.818	0.526	4e-47
Q9WWR3	207	Cytochrome o ubiquinol ox	yes	N/A	0.994	0.826	0.485	3e-43
P0ABJ5	204	Cytochrome o ubiquinol ox	yes	N/A	0.994	0.838	0.502	3e-42
P0ABJ3	204	Cytochrome o ubiquinol ox	N/A	N/A	0.994	0.838	0.502	3e-42
P0ABJ4	204	Cytochrome o ubiquinol ox	yes	N/A	0.994	0.838	0.502	3e-42
P57542	205	Cytochrome o ubiquinol ox	yes	N/A	0.994	0.834	0.485	1e-35
Q89AA5	194	Cytochrome o ubiquinol ox	yes	N/A	0.982	0.871	0.485	6e-34
Q8K995	189	Cytochrome o ubiquinol ox	yes	N/A	0.994	0.904	0.456	4e-32
E0TW65	204	Quinol oxidase subunit 3	yes	N/A	0.976	0.823	0.404	8e-31
P34958	204	Quinol oxidase subunit 3	yes	N/A	0.976	0.823	0.398	2e-30

>sp|Q9I425|CYOC_PSEAE Cytochrome o ubiquinol oxidase subunit 3 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=cyoC PE=3 SV=1

 Score =  187 bits (474), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 121/171 (70%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           M+DC++F+S+FA YAVL H+ A GP+   IF+LP V + T ILL+SS + G A++ A K 
Sbjct: 39  MTDCVLFASVFATYAVLVHHTAGGPSGKDIFELPYVLVETAILLVSSCTYGLAMLSAHKG 98

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
                I WL +T LLG  F+ +E+NEF  LI   FGP RSAFLSSFF LVGMHGLH+  G
Sbjct: 99  AKGQAIAWLGVTFLLGAAFIGMEINEFHHLIAEGFGPSRSAFLSSFFTLVGMHGLHVSAG 158

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
           ++W++ L+ QI    L  +N  R++CLS+FWHFLDI+WI +FT +YL+G L
Sbjct: 159 LLWMLVLMAQIWTRGLTAQNNTRMMCLSLFWHFLDIVWICVFTVVYLMGAL 209

Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain of E.coli that predominates when cells are grown at high aeration.
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)
EC: 1EC: .EC: 1EC: 0EC: .EC: 3EC: .EC: -

>sp|Q9WWR3|CYOC_PSEPU Cytochrome o ubiquinol oxidase subunit 3 OS=Pseudomonas putida GN=cyoC PE=3 SV=1

 Score =  174 bits (441), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 119/171 (69%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           M+DC++F+SLFA YAVL  ++A GP+   IF+L  VA+ T+ LLLSS++ GFA+++    
Sbjct: 37  MTDCILFASLFATYAVLSGSFAGGPSGHDIFQLDFVAVETLFLLLSSITFGFAMLKMFDG 96

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
              GV+ WL++T L G  F+ +E+ EF  LI   FGP RS FLS FF LVG HGLH+  G
Sbjct: 97  KKAGVLGWLAVTFLFGAGFIAMEIYEFHHLIAEGFGPQRSGFLSGFFALVGTHGLHVTAG 156

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
           +IW+  ++ QI K+ +    + R+ CLS+FWHFLD++WI +FT +YL+G L
Sbjct: 157 LIWMAIMMYQINKHGITPTAKTRMSCLSLFWHFLDVVWICVFTVVYLLGVL 207

Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain of E.coli that predominates when cells are grown at high aeration.

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: -

>sp|P0ABJ5|CYOC_SHIFL Cytochrome o ubiquinol oxidase subunit 3 OS=Shigella flexneri GN=cyoC PE=3 SV=1

 Score =  170 bits (431), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/171 (50%), Positives = 116/171 (67%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDC++FS LFA YAVL +  A GPT   IF+LP V + T +LL SS++ G A I   K 
Sbjct: 34  MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKN 93

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
             + VI WL++T L G  F+ +E+ EF  LI    GP RS FLS+FF LVG HGLH+  G
Sbjct: 94  NKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSG 153

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
           +IW+  L++QI +  L   N+ RI+CLS+FWHFLD++WI +FT +YL+G +
Sbjct: 154 LIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM 204

Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration.

Shigella flexneri (taxid: 623)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: -

>sp|P0ABJ3|CYOC_ECOLI Cytochrome o ubiquinol oxidase subunit 3 OS=Escherichia coli (strain K12) GN=cyoC PE=1 SV=1

 Score =  170 bits (431), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/171 (50%), Positives = 116/171 (67%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDC++FS LFA YAVL +  A GPT   IF+LP V + T +LL SS++ G A I   K 
Sbjct: 34  MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKN 93

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
             + VI WL++T L G  F+ +E+ EF  LI    GP RS FLS+FF LVG HGLH+  G
Sbjct: 94  NKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSG 153

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
           +IW+  L++QI +  L   N+ RI+CLS+FWHFLD++WI +FT +YL+G +
Sbjct: 154 LIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM 204

Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain of E.coli that predominates when cells are grown at high aeration.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: -

>sp|P0ABJ4|CYOC_ECOL6 Cytochrome o ubiquinol oxidase subunit 3 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cyoC PE=3 SV=1

 Score =  170 bits (431), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/171 (50%), Positives = 116/171 (67%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDC++FS LFA YAVL +  A GPT   IF+LP V + T +LL SS++ G A I   K 
Sbjct: 34  MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKN 93

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
             + VI WL++T L G  F+ +E+ EF  LI    GP RS FLS+FF LVG HGLH+  G
Sbjct: 94  NKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSG 153

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
           +IW+  L++QI +  L   N+ RI+CLS+FWHFLD++WI +FT +YL+G +
Sbjct: 154 LIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM 204

Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: -

>sp|P57542|CYOC_BUCAI Cytochrome o ubiquinol oxidase subunit 3 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=cyoC PE=3 SV=1

 Score =  149 bits (375), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 121/171 (70%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDC++F+ LFA+YA++  N +    + +IF L S+ L T +LLLSSLSCGF +I   +K
Sbjct: 35  MSDCIMFAVLFAVYAIVSSNISINLISNKIFNLSSILLETFLLLLSSLSCGFVVIAMNQK 94

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
            +  +  +L+IT + G  F+++E++EF ELI  NFGP ++AF S FF LV  HG+HI FG
Sbjct: 95  RIKMIYSFLTITFIFGLIFLLMEVHEFYELIIENFGPDKNAFFSIFFTLVATHGVHIFFG 154

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
           +I +++++ QIKK  L    + RI+C S+FWHFLDIIWI +FTF+YL G +
Sbjct: 155 LILILSILYQIKKLGLTNSIRTRILCFSVFWHFLDIIWICVFTFVYLNGAI 205

Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration.

Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: -

>sp|Q89AA5|CYOC_BUCBP Cytochrome o ubiquinol oxidase subunit 3 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=cyoC PE=3 SV=1

 Score =  143 bits (360), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 114/169 (67%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDC+IF +LF++Y +L  N A+GP+   IF+   + + T +LL SS SC   + + + K
Sbjct: 24  MSDCIIFCTLFSVYFILVDNVAQGPSGHNIFQNNLIIIETFLLLFSSFSCNLVLFEMKNK 83

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
            +  V  WL IT LLG  FV LEL EF  LIN  FGP RS FLSSFFVL+  HG+H+I G
Sbjct: 84  NLYMVFLWLGITFLLGLLFVFLELFEFFHLINLGFGPTRSGFLSSFFVLIATHGIHVISG 143

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
           +IW+I +I  +  +N+      R++CL++FWHFLDI+W+ IF+F+YL G
Sbjct: 144 LIWIIVMIKYVYTFNITNLIYYRMLCLNLFWHFLDIVWVFIFSFVYLFG 192

Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration.

Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) (taxid: 224915)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: -

>sp|Q8K995|CYOC_BUCAP Cytochrome o ubiquinol oxidase subunit 3 OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=cyoC PE=3 SV=1

 Score =  137 bits (345), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 116/171 (67%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDC+IF+ LFA+YA++  N++      +IF L  V L T+ILLLSSLS G   IQ  K 
Sbjct: 19  MSDCIIFAVLFAVYAIISSNFSTNLINHKIFNLSYVFLETLILLLSSLSSGMLTIQKNKN 78

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
            +  + F+L +T  LG  F+++E+NEF +LI  N  P + AF S FF +VG+HG+H+ FG
Sbjct: 79  NIKIIYFYLLLTFFLGLSFLLMEVNEFYKLILENCSPSQHAFFSIFFTIVGVHGIHVFFG 138

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
           +I++++++ Q+    +    + RI+C S+FWHFLDIIWI +FTF+YL G +
Sbjct: 139 LIFILSILYQLFYLGITNTIRIRILCFSLFWHFLDIIWICVFTFVYLNGVI 189

Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration.

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: -

>sp|E0TW65|QOX3_BACPZ Quinol oxidase subunit 3 OS=Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) GN=qoxC PE=1 SV=1

 Score =  132 bits (333), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 108/168 (64%)

Query: 2   SDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKY 61
           ++ ++FS+LFA + VL +  A G    ++F++  V + T +LL+SS +CG A+ + ++  
Sbjct: 33  AEIVLFSTLFATFFVLQNRTAGGVLPDELFEVNLVMIMTFLLLISSFTCGIAVHEMRRGS 92

Query: 62  VNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGI 121
           + GV+ W  IT LLG  FV  E+NEF+  ++       SAF S FFVL+G HG H+  GI
Sbjct: 93  LKGVVIWTIITLLLGAGFVGCEINEFVHYVHEGASLGTSAFWSGFFVLLGTHGTHVTIGI 152

Query: 122 IWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
            W+I +++Q+KK  L  +   +I   S++WHFLD++WI IFT +YL+G
Sbjct: 153 FWIIGILIQLKKRGLTPQTSSKIFISSLYWHFLDVVWIFIFTGVYLMG 200

Catalyzes quinol oxidation with the concomitant reduction of oxygen to water. Major component for energy conversion during vegetative growth.

Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) (taxid: 655816)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: -

>sp|P34958|QOX3_BACSU Quinol oxidase subunit 3 OS=Bacillus subtilis (strain 168) GN=qoxC PE=3 SV=1

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 107/168 (63%)

Query: 2   SDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKY 61
           ++ ++FS+LFA + VL +  A G    ++F++  V + T +LL+SS +CG A+ + ++  
Sbjct: 33  AEIVLFSTLFATFFVLKNRTAGGVLPDELFEVNLVMIMTFLLLISSFTCGIAVHEMRRGS 92

Query: 62  VNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGI 121
           + GV+ W  IT LLG  FV  E+NEF+  ++       SAF S FFVL+G HG H+  GI
Sbjct: 93  LKGVVIWTIITLLLGAGFVGCEINEFVHYVHEGAALSTSAFWSGFFVLLGTHGTHVTIGI 152

Query: 122 IWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
            W+  +++Q+KK  L  +   +I   S++WHFLD++WI IFT +YL+G
Sbjct: 153 FWITGILIQLKKRGLTPQTSSKIFISSLYWHFLDVVWIFIFTGVYLMG 200

Catalyzes quinol oxidation with the concomitant reduction of oxygen to water. Major component for energy conversion during vegetative growth.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
395004860	219	cytochrome o ubiquinol oxidase, subunit	0.994	0.780	0.619	4e-58
152980608	210	cytochrome o ubiquinol oxidase subunit I	1.0	0.819	0.627	7e-58
408373920	213	cytochrome o ubiquinol oxidase subunit I	1.0	0.807	0.604	2e-57
374371719	218	cytochrome o ubiquinol oxidase subunit I	1.0	0.788	0.593	4e-57
160899493	210	cytochrome o ubiquinol oxidase subunit I	0.994	0.814	0.614	5e-57
399018612	211	cytochrome o ubiquinol oxidase, subunit	1.0	0.815	0.610	8e-57
445497372	209	cytochrome o ubiquinol oxidase subunit 3	1.0	0.822	0.604	8e-57
329915609	202	Cytochrome O ubiquinol oxidase subunit I	1.0	0.851	0.587	9e-57
330824828	210	cytochrome o ubiquinol oxidase subunit I	0.994	0.814	0.608	3e-56
319795347	221	cytochrome o ubiquinol oxidase subunit i	1.0	0.778	0.593	3e-56

>gi|395004860|ref|ZP_10388836.1| cytochrome o ubiquinol oxidase, subunit III [Acidovorax sp. CF316] gi|394317205|gb|EJE53807.1| cytochrome o ubiquinol oxidase, subunit III [Acidovorax sp. CF316]

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 106/171 (61%), Positives = 135/171 (78%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDCLIF++LFA Y VLG +YA GPT  Q+F LP VA+NT  LL SS++ GFA++Q Q+ 
Sbjct: 49  MSDCLIFAALFATYGVLGRSYAAGPTGAQLFDLPLVAINTAFLLASSITFGFAMLQKQQN 108

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
            V G + WL+IT L G  F+ LEL EF  LI++  GP RSAFLS+FF LVG HGLH+ FG
Sbjct: 109 KVGGTLAWLAITGLFGLGFLALELYEFHHLIHQGAGPQRSAFLSAFFTLVGTHGLHVTFG 168

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
           +IWL+ L+LQIKK+ LI EN+RR++CLSMFWHFLD++WIG+FTF+YL+G L
Sbjct: 169 LIWLVVLMLQIKKHGLIHENKRRLMCLSMFWHFLDVVWIGVFTFVYLMGVL 219

Source: Acidovorax sp. CF316

Species: Acidovorax sp. CF316

Genus: Acidovorax

Family: Comamonadaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|152980608|ref|YP_001354328.1| cytochrome o ubiquinol oxidase subunit III [Janthinobacterium sp. Marseille] gi|151280685|gb|ABR89095.1| cytochrome o ubiquinol oxidase subunit III [Janthinobacterium sp. Marseille]

 Score =  228 bits (581), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 108/172 (62%), Positives = 134/172 (77%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDCLIF+ LFA YAVLG NYA GPT  ++F LP VA NT  LLLSS++ GFA+++AQ+K
Sbjct: 39  MSDCLIFACLFATYAVLGRNYAGGPTGAELFDLPLVAANTAFLLLSSITYGFAMLEAQRK 98

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
            +   + WL+IT LLG  F+ LEL EF  LI+   GP RSAFL+SFF LV  HGLH+ FG
Sbjct: 99  RLKATMIWLAITGLLGAAFLALELYEFSHLIHEGAGPQRSAFLTSFFALVATHGLHVTFG 158

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS 172
           IIWLITL+ Q+K++ LI EN RR++CLSMFWHFLD+IWIG+FTF+YL+G L 
Sbjct: 159 IIWLITLMFQLKRHGLIPENGRRLMCLSMFWHFLDVIWIGVFTFVYLMGVLP 210

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|408373920|ref|ZP_11171612.1| cytochrome o ubiquinol oxidase subunit III [Alcanivorax hongdengensis A-11-3] gi|407766208|gb|EKF74653.1| cytochrome o ubiquinol oxidase subunit III [Alcanivorax hongdengensis A-11-3]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 134/172 (77%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDCLIF+SLFA Y VLG NYA GP+   IF+LP VALNT  LL+SS++ GFA++Q Q+ 
Sbjct: 41  MSDCLIFASLFATYGVLGRNYAGGPSGADIFELPLVALNTTFLLISSITYGFAVLQMQQN 100

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
            + G + WL IT L G  F+ +EL EFI LIN   GP RS FL++FF LVG HGLH+ FG
Sbjct: 101 KLRGTMLWLVITGLFGAAFIGVELYEFIGLINEGAGPQRSGFLTAFFSLVGTHGLHVTFG 160

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS 172
           ++W++TL+LQ+KK+ LI EN+RR+ CLSMFWHFLD++WIG+FTF+YL+G L 
Sbjct: 161 LVWMVTLLLQLKKHGLIHENKRRVFCLSMFWHFLDVVWIGVFTFVYLMGVLP 212

Source: Alcanivorax hongdengensis A-11-3

Species: Alcanivorax hongdengensis

Genus: Alcanivorax

Family: Alcanivoracaceae

Order: Oceanospirillales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|374371719|ref|ZP_09629651.1| cytochrome o ubiquinol oxidase subunit III [Cupriavidus basilensis OR16] gi|373096746|gb|EHP37935.1| cytochrome o ubiquinol oxidase subunit III [Cupriavidus basilensis OR16]

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 102/172 (59%), Positives = 134/172 (77%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDCL+F+SLFA+Y V+G  YA GPT  ++F+LP VALNT +LLLSS++ GFA+++ QK 
Sbjct: 47  MSDCLVFASLFAVYGVVGRRYAGGPTGAELFELPLVALNTTMLLLSSITYGFAVLEMQKA 106

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
            V   + WL +T LLG  F+ LEL EF  L++   GP RSAFLSSFF LVG HGLH+  G
Sbjct: 107 QVRTTLIWLGVTGLLGAAFISLELYEFAHLVHDGAGPQRSAFLSSFFTLVGTHGLHVTVG 166

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS 172
           I+WLITL+ Q+ ++ LI EN+RR++CLSMFWHFLD++WIG+FTF+YL+G L 
Sbjct: 167 IVWLITLMAQVGQHGLIPENKRRLMCLSMFWHFLDVVWIGVFTFVYLMGVLP 218

Source: Cupriavidus basilensis OR16

Species: Cupriavidus basilensis

Genus: Cupriavidus

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|160899493|ref|YP_001565075.1| cytochrome o ubiquinol oxidase subunit III [Delftia acidovorans SPH-1] gi|333914377|ref|YP_004488109.1| cytochrome o ubiquinol oxidase subunit III [Delftia sp. Cs1-4] gi|160365077|gb|ABX36690.1| cytochrome o ubiquinol oxidase, subunit III [Delftia acidovorans SPH-1] gi|333744577|gb|AEF89754.1| cytochrome o ubiquinol oxidase, subunit III [Delftia sp. Cs1-4]

 Score =  225 bits (573), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 105/171 (61%), Positives = 132/171 (77%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDCLIF++LFA Y VLG NYA GPT  Q+F LP VA+NT  LLLSS++ GFA++Q Q+ 
Sbjct: 40  MSDCLIFAALFATYGVLGRNYAAGPTGAQLFDLPLVAMNTAFLLLSSITFGFAMLQKQQG 99

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
            + G   WL+IT L G  F+ LEL EF  L++   GP RSAFLSSFF LVG HGLH+ FG
Sbjct: 100 KLGGTQLWLAITGLFGLCFLGLELYEFSHLLHEGAGPQRSAFLSSFFTLVGTHGLHVSFG 159

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
           +IWL+TL++QI K+ L  EN RR++CLSMFWHFLD++WIG+FTF+YL+G L
Sbjct: 160 LIWLVTLMIQINKHGLTHENNRRLMCLSMFWHFLDVVWIGVFTFVYLMGVL 210

Source: Delftia acidovorans SPH-1

Species: Delftia acidovorans

Genus: Delftia

Family: Comamonadaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|399018612|ref|ZP_10720784.1| cytochrome o ubiquinol oxidase, subunit III [Herbaspirillum sp. CF444] gi|398100626|gb|EJL90860.1| cytochrome o ubiquinol oxidase, subunit III [Herbaspirillum sp. CF444]

 Score =  224 bits (572), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 105/172 (61%), Positives = 133/172 (77%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDCLIF+ LFA YAVLG NYA GPT  ++F LP VA+NT +LLLSS++ GFA+++ QKK
Sbjct: 40  MSDCLIFACLFATYAVLGRNYAGGPTGAELFDLPLVAINTSLLLLSSITYGFAMLEMQKK 99

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
            V   + WL++T LLG  F+ LEL EFI LI+   GP RS FL+SFF LV  HGLH+ FG
Sbjct: 100 KVRTTLIWLAVTGLLGAGFIYLELYEFIHLIHEGAGPQRSGFLTSFFALVATHGLHVSFG 159

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS 172
           I+WLITL+ Q+ K+ L  EN RR++CLSMFWHFLD++WIG+FTF+YL+G L 
Sbjct: 160 IVWLITLMFQVNKHGLTPENGRRLMCLSMFWHFLDVVWIGVFTFVYLMGVLP 211

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|445497372|ref|ZP_21464227.1| cytochrome o ubiquinol oxidase subunit 3 [Janthinobacterium sp. HH01] gi|444787367|gb|ELX08915.1| cytochrome o ubiquinol oxidase subunit 3 [Janthinobacterium sp. HH01]

 Score =  224 bits (571), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 132/172 (76%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDCL+F+ LFA YAVLG NYA GPT  ++F LP+VA+NT  LL+SS++ GFA+I +Q+K
Sbjct: 38  MSDCLLFAGLFAAYAVLGRNYAGGPTGAELFDLPTVAINTGFLLMSSITYGFAMIASQRK 97

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
            +   I WL IT   G  F+ LEL+EF+ LI+   GP RSAFL+SFF LVG HGLH+ FG
Sbjct: 98  NLKATIVWLLITGAFGMAFLYLELDEFVHLIHEGAGPQRSAFLTSFFALVGTHGLHVTFG 157

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS 172
            IWLITL+ Q+ K+ L  EN RR++CLSMFWHFLD+IWIG+FTF+YL+G L 
Sbjct: 158 SIWLITLVFQLAKHGLTPENNRRLMCLSMFWHFLDVIWIGVFTFVYLMGVLP 209

Source: Janthinobacterium sp. HH01

Species: Janthinobacterium sp. HH01

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|329915609|ref|ZP_08276293.1| Cytochrome O ubiquinol oxidase subunit III [Oxalobacteraceae bacterium IMCC9480] gi|327544870|gb|EGF30240.1| Cytochrome O ubiquinol oxidase subunit III [Oxalobacteraceae bacterium IMCC9480]

 Score =  224 bits (571), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 101/172 (58%), Positives = 135/172 (78%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDCL+F++LFA+YAVLG NYA GPT  ++F LP VALNT  LL+SS++ GFA+++ Q+K
Sbjct: 31  MSDCLVFAALFAVYAVLGRNYAGGPTGAELFDLPLVALNTAFLLVSSITYGFAMLEMQRK 90

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
            V   + W+ IT L+G  F+ LE+ EFI LI+   GP RS FL++FF LVG HGLH++FG
Sbjct: 91  RVRSTLIWMGITGLIGACFIGLEMYEFIHLIHEGAGPQRSGFLTAFFTLVGTHGLHVMFG 150

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS 172
           IIWL+TL+LQ+  + L  EN RR++CLSMFWHFLD++WIG+FTF+YL+G L 
Sbjct: 151 IIWLVTLMLQVSVHGLTTENSRRLMCLSMFWHFLDVVWIGVFTFVYLMGVLP 202

Source: Oxalobacteraceae bacterium IMCC9480

Species: Oxalobacteraceae bacterium IMCC9480

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|330824828|ref|YP_004388131.1| cytochrome o ubiquinol oxidase subunit III [Alicycliphilus denitrificans K601] gi|329310200|gb|AEB84615.1| cytochrome o ubiquinol oxidase, subunit III [Alicycliphilus denitrificans K601]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 132/171 (77%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDCLIF+ LFA Y VLG NYA GPT  ++F L  VA+NT  LLLSS++ GFA++Q Q++
Sbjct: 40  MSDCLIFAVLFATYGVLGRNYAGGPTGAELFDLKLVAINTAFLLLSSITFGFAMLQKQQR 99

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
            V G + WL++T LLG  F+ +EL EF  L++   GP RSAFLSSFF LVG HGLH+ FG
Sbjct: 100 DVRGTLAWLAVTGLLGLAFLAVELYEFAHLLHEGAGPQRSAFLSSFFTLVGTHGLHVTFG 159

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
            IWL+TL++QI K+ LI EN RR+ CLSMFWHFLD++WIG+FTF+YL+G L
Sbjct: 160 TIWLVTLMIQIGKHGLIPENARRLNCLSMFWHFLDVVWIGVFTFVYLMGVL 210

Source: Alicycliphilus denitrificans K601

Species: Alicycliphilus denitrificans

Genus: Alicycliphilus

Family: Comamonadaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|319795347|ref|YP_004156987.1| cytochrome o ubiquinol oxidase subunit iii [Variovorax paradoxus EPS] gi|315597810|gb|ADU38876.1| cytochrome o ubiquinol oxidase, subunit III [Variovorax paradoxus EPS]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 102/172 (59%), Positives = 136/172 (79%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDCLIF+ LFA+Y VLG +YA GP+   +F LP VA+NT +LLLSS++ GFA+++ QKK
Sbjct: 50  MSDCLIFACLFAVYGVLGRSYAAGPSGADLFDLPLVAINTSLLLLSSITYGFAMLEMQKK 109

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
            + GV+ WL+IT LLG  F+ LEL EF  L++   GP RSAFLSSFF LVG HGLH+ FG
Sbjct: 110 RMGGVLVWLAITGLLGAGFIGLELYEFAHLLHEGAGPQRSAFLSSFFALVGTHGLHVSFG 169

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS 172
           IIWLI L++Q+ K+     N+RR++CLSMFWHFLD++WIG+FTF+YL+G+++
Sbjct: 170 IIWLIVLMIQLPKHGFTAANRRRLMCLSMFWHFLDVVWIGVFTFVYLMGSMA 221

Source: Variovorax paradoxus EPS

Species: Variovorax paradoxus

Genus: Variovorax

Family: Comamonadaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
UNIPROTKB|P0ABJ3	204	cyoC "cytochrome bo terminal o	0.994	0.838	0.444	4.6e-34
TIGR_CMR|BA_0701	200	BA_0701 "cytochrome aa3 quinol	0.994	0.855	0.345	7.3e-27
UNIPROTKB|P34958	204	qoxC "Quinol oxidase subunit 3	0.976	0.823	0.351	1.1e-25
TIGR_CMR|CBU_1038	198	CBU_1038 "cytochrome o ubiquin	0.988	0.858	0.366	2.2e-25
TIGR_CMR|BA_4152	207	BA_4152 "cytochrome c oxidase,	0.970	0.806	0.303	4e-19
UNIPROTKB|P63856	203	ctaE "Probable cytochrome c ox	0.953	0.807	0.274	9.8e-16
TIGR_CMR|SO_4609	291	SO_4609 "cytochrome c oxidase	0.761	0.450	0.25	1.1e-10
TIGR_CMR|CPS_0233	294	CPS_0233 "cytochrome c oxidase	0.819	0.479	0.227	9.3e-10
TIGR_CMR|ECH_0029	274	ECH_0029 "cytochrome c oxidase	0.837	0.525	0.241	3.5e-09
UNIPROTKB|P18945	261	MT-CO3 "Cytochrome c oxidase s	0.906	0.597	0.267	1.1e-08

UNIPROTKB|P0ABJ3 cyoC "cytochrome bo terminal oxidase subunit III" [Escherichia coli K-12 (taxid:83333)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 76/171 (44%), Positives = 99/171 (57%)

Query:     1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIIXXXXXXXCGFAIIQAQKK 60
             MSDC++FS LFA YAVL +  A GPT   IF+LP V + T +        G A I   K 
Sbjct:    34 MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKN 93

Query:    61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGXXXXXX 120
               + VI WL++T L G  F+ +E+ EF  LI    GP RS FLS+FF LVG HG      
Sbjct:    94 NKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSG 153

Query:   121 XXXXXXXXXQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
                      QI +  L   N+ RI+CLS+FWHFLD++WI +FT +YL+G +
Sbjct:   154 LIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM 204

GO:0008827 "cytochrome o ubiquinol oxidase activity" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0009319 "cytochrome o ubiquinol oxidase complex" evidence=IDA

GO:0015990 "electron transport coupled proton transport" evidence=IMP

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IDA;IMP

GO:0019646 "aerobic electron transport chain" evidence=IEA;IMP

GO:0005886 "plasma membrane" evidence=IEA

GO:0009486 "cytochrome bo3 ubiquinol oxidase activity" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IDA

GO:0015453 "oxidoreduction-driven active transmembrane transporter activity" evidence=IDA

TIGR_CMR|BA_0701 BA_0701 "cytochrome aa3 quinol oxidase, subunit III" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 59/171 (34%), Positives = 93/171 (54%)

Query:     2 SDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIIXXXXXXXCGFAIIQAQKKY 61
             ++ ++F++LFA Y VL    A+GPT  Q+F+L ++ + T++       CG  I + +K  
Sbjct:    30 AEIMLFATLFASYLVLAGRTADGPTPAQLFELKTLLIQTLLLLTSSFTCGIVIHEMRKHN 89

Query:    62 VNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGXXXXXXX 121
                ++ W  +T LLG  F+  E+ EFI  I        SAFLS FFVL+G HG       
Sbjct:    90 QKAMLGWFVLTLLLGAGFLFFEIEEFIMYIGEGATIQTSAFLSGFFVLLGTHGAHVTGGI 149

Query:   122 XXXXXXXXQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTLS 172
                     QI K  L     R++  +S++WHFLD++W+ I+T +YL G ++
Sbjct:   150 IWAICVIIQILKRGLTPVTARKVFIISLYWHFLDLVWVFIYTLVYLNGMVA 200

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=ISS

GO:0015990 "electron transport coupled proton transport" evidence=ISS

GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS

UNIPROTKB|P34958 qoxC "Quinol oxidase subunit 3" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 59/168 (35%), Positives = 92/168 (54%)

Query:     2 SDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIIXXXXXXXCGFAIIQAQKKY 61
             ++ ++FS+LFA + VL +  A G    ++F++  V + T +       CG A+ + ++  
Sbjct:    33 AEIVLFSTLFATFFVLKNRTAGGVLPDELFEVNLVMIMTFLLLISSFTCGIAVHEMRRGS 92

Query:    62 VNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGXXXXXXX 121
             + GV+ W  IT LLG  FV  E+NEF+  ++       SAF S FFVL+G HG       
Sbjct:    93 LKGVVIWTIITLLLGAGFVGCEINEFVHYVHEGAALSTSAFWSGFFVLLGTHGTHVTIGI 152

Query:   122 XXXXXXXXQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
                     Q+KK  L  +   +I   S++WHFLD++WI IFT +YL+G
Sbjct:   153 FWITGILIQLKKRGLTPQTSSKIFISSLYWHFLDVVWIFIFTGVYLMG 200

GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS

GO:0042773 "ATP synthesis coupled electron transport" evidence=ISS

TIGR_CMR|CBU_1038 CBU_1038 "cytochrome o ubiquinol oxidase, subunit III" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 63/172 (36%), Positives = 89/172 (51%)

Query:     1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIIXXXXXXXCGFAIIQAQKK 60
             M+DC++F+SLFA + VL H  A GP    +  LP V + T            AI    K 
Sbjct:    27 MTDCILFASLFATFLVLHHPGAVGPPLKPLIDLPYVLVETFFLLASNFTFCLAIFGINKN 86

Query:    61 YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWR-SAFLSSFFVLVGMHGXXXXX 119
              +  VIFWL +T +LG  FV++E+ EFI L    +  W  S   S+FF LVG HG     
Sbjct:    87 KLPAVIFWLILTFILGAGFVVMEVMEFIHLNAEGYS-WHVSGAASAFFTLVGTHGFHVTM 145

Query:   120 XXXXXXXXXXQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
                       Q+    +     RR++ L +FW+FLDI+WI +FT +YL+G +
Sbjct:   146 GLLWILIMIIQLPILKINKNTARRMVYLGLFWNFLDIVWIFLFTIVYLMGAV 197

GO:0008827 "cytochrome o ubiquinol oxidase activity" evidence=ISS

GO:0009319 "cytochrome o ubiquinol oxidase complex" evidence=ISS

TIGR_CMR|BA_4152 BA_4152 "cytochrome c oxidase, subunit III" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 51/168 (30%), Positives = 85/168 (50%)

Query:     3 DCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIIXXXXXXXCGFAIIQAQKKYV 62
             + ++F+SLF  Y  L ++   GPT+ ++F++P V + T++         +A+   +    
Sbjct:    37 ETVLFASLFGTYLALKNSTNGGPTSQEMFQMPLVFIMTMLLLTSSLTSVYAMYHMKNFNF 96

Query:    63 NGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRS-AFLSSFFVLVGMHGXXXXXXX 121
               +  WL +T LLG  F+  E+ EF    +      RS AF S+F+ LVG HG       
Sbjct:    97 KKMQLWLLVTVLLGLGFLGFEIYEFYHYAHEFKHTMRSSAFGSAFYALVGTHGLHVLFGL 156

Query:   122 XXXXXXXXQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
                     +  K  L L N  +    S++WHF+D++W+ IFT +YL+G
Sbjct:   157 CWILTLIFRNAKRGLNLYNAPKFYVASIYWHFIDVVWVFIFTVVYLMG 204

GO:0004129 "cytochrome-c oxidase activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|P63856 ctaE "Probable cytochrome c oxidase subunit 3" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 47/171 (27%), Positives = 77/171 (45%)

Query:     2 SDCLIFSSLFAIY----AVLGHNYAEGPTAIQIFKLPSVALNTIIXXXXXXXCGFAIIQA 57
             S+ + F+ LFA Y    A  G N+   PT + +++   V   T++       C   +  A
Sbjct:    35 SELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPV---TLVLIASSFTCQMGVFAA 91

Query:    58 QKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGXXX 117
             ++  + G+  W  IT L+G FFV+ +  E+  L++       SA+ S F++  G HG   
Sbjct:    92 ERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSAYGSVFYLATGFHGLHV 151

Query:   118 XXXXXXXXXXXXQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
                         +              I +S +WHF+DI+WI +FT IY I
Sbjct:   152 TGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFI 202

GO:0040007 "growth" evidence=IMP

TIGR_CMR|SO_4609 SO_4609 "cytochrome c oxidase subunit III" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 153 (58.9 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 33/132 (25%), Positives = 59/132 (44%)

Query:    38 LNTIIXXXXXXXCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
             +NTI+         FA I  +K   + +  WL +T LLG  F+ L++ E+          
Sbjct:   160 INTIVLLTSSVTLHFAHISLEKGKRSAITLWLGLTILLGIGFLALQVAEYRHAYEEMGLT 219

Query:    98 WRSAFL-SSFFVLVGMHGXXXXXXXXXXXXXXXQIKKYNLILENQRRIICLSMFWHFLDI 156
               S    ++FF+L G HG               ++ K +   +        S +WHF+D+
Sbjct:   220 LTSGIYGNTFFLLTGFHGMHVTLGTIFLLVLFFRVLKGHFSADKHFAFQAGSWYWHFVDV 279

Query:   157 IWIGIFTFIYLI 168
             +W+ +F F+Y++
Sbjct:   280 VWLCLFIFVYVL 291

GO:0004129 "cytochrome-c oxidase activity" evidence=ISS

TIGR_CMR|CPS_0233 CPS_0233 "cytochrome c oxidase subunit III" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 145 (56.1 bits), Expect = 9.3e-10, P = 9.3e-10
 Identities = 33/145 (22%), Positives = 65/145 (44%)

Query:    26 TAIQIFKLPSVALNTIIXXXXXXXCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELN 85
             TA+  + LP +  NT++         FA     K     +  WL +T +LG  F+  ++ 
Sbjct:   152 TAMGWYGLPLI--NTVLLLTSSITAHFAHSALIKNNRGPLKAWLGLTIVLGLAFMFFQVE 209

Query:    86 EFIELINRNFGPWRSA--FLSSFFVLVGMHGXXXXXXXXXXXXXXXQIKKYNLILENQRR 143
             E+    +     +  +  + ++F++L G HG               ++ K +   EN   
Sbjct:   210 EYAHGYSEEMRLFLDSGVYGNTFYLLTGFHGMHVTLGCIMLIVMWFRVLKGHFTPENHFA 269

Query:   144 IICLSMFWHFLDIIWIGIFTFIYLI 168
                 S +WHF+D++W+ +F F+Y++
Sbjct:   270 FQAASWYWHFVDVVWVMLFVFVYIL 294

GO:0004129 "cytochrome-c oxidase activity" evidence=ISS

TIGR_CMR|ECH_0029 ECH_0029 "cytochrome c oxidase, subunit III" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 139 (54.0 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 36/149 (24%), Positives = 66/149 (44%)

Query:    24 GPTAIQIFKLPSVALNTIIXXXXXXXCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILE 83
             G T +  + +P   LNT+I         ++            +  L +T LLG  F + +
Sbjct:   129 GITKLDPWSIP--LLNTVILLLSGCTLTWSHYSLINDDNKNTVKMLGMTLLLGITFSVFQ 186

Query:    84 LNEFIEL--INRNFGPWRSAFLSSFFVLVGMHGXXXXXXXXXXXXXXXQIKKYNLILENQ 141
               E++ +    R  G  ++ + S+F+++ G HG               + K+  L  EN 
Sbjct:   187 AIEYLHIGFSFRETGE-KAIYSSNFYMMTGFHGVHVIVGTLFLTICWLRAKRNQLSPENH 245

Query:   142 RRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
                 C + +WHF+D+IW+ +F F+Y I +
Sbjct:   246 IGFECAAWYWHFVDVIWLLLFFFLYWISS 274

GO:0004129 "cytochrome-c oxidase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|P18945 MT-CO3 "Cytochrome c oxidase subunit 3" [Gallus gallus (taxid:9031)]

 Score = 134 (52.2 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 45/168 (26%), Positives = 73/168 (43%)

Query:     7 FSSLFAIYAVLGHNYAEGPTAIQ-IFKLPSVALNTIIXXXXXXXCGFA---IIQAQKKYV 62
             F S  A    LG  +   PT ++ +  L    LNT I         +A   I +  +K  
Sbjct:   102 FHSSLAPTPELGGQWP--PTGVKPLNPLEVPLLNTAILLASGVTVTWAHHSITEGNRKQA 159

Query:    63 NGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGXXXXXXXX 122
                I  L++T LLGF+F  L+  E+ E    +F    S + S+FFV  G HG        
Sbjct:   160 ---IHALTLTILLGFYFTALQAMEYHEA---SFSIADSVYGSTFFVATGFHGLHVIIGSS 213

Query:   123 XXXXXXXQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
                    ++ K++    +       + +WHF+DIIW+ ++  +Y  G+
Sbjct:   214 FLTVCLLRLIKFHFTPNHHFGFEAAAWYWHFVDIIWLFLYMSMYWWGS 261

GO:0019646 "aerobic electron transport chain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q04442	COX3_BACPE	1, ., 9, ., 3, ., 1	0.3431	0.9767	0.8155	yes	N/A
Q9I425	CYOC_PSEAE	1, ., 1, 0, ., 3, ., -	0.5263	0.9941	0.8181	yes	N/A
Q4L563	QOX3_STAHJ	1, ., 1, 0, ., 3, ., -	0.3975	0.9476	0.8109	yes	N/A
Q5HH25	QOX3_STAAC	1, ., 1, 0, ., 3, ., -	0.3882	0.9709	0.8308	yes	N/A
Q9X809	COX3_STRCO	1, ., 9, ., 3, ., 1	0.3275	0.9534	0.7961	yes	N/A
Q9WWR3	CYOC_PSEPU	1, ., 1, 0, ., 3, ., -	0.4853	0.9941	0.8260	yes	N/A
Q82AK5	COX3_STRAW	1, ., 9, ., 3, ., 1	0.3121	0.9593	0.8009	yes	N/A
P63856	COX3_MYCTU	1, ., 9, ., 3, ., 1	0.3274	0.9534	0.8078	yes	N/A
P57542	CYOC_BUCAI	1, ., 1, 0, ., 3, ., -	0.4853	0.9941	0.8341	yes	N/A
Q8FNQ9	COX3_COREF	1, ., 9, ., 3, ., 1	0.3235	0.9709	0.8146	yes	N/A
Q7A6A0	QOX3_STAAN	1, ., 1, 0, ., 3, ., -	0.3882	0.9709	0.8308	yes	N/A
Q49WI2	QOX3_STAS1	1, ., 1, 0, ., 3, ., -	0.3915	0.9476	0.8109	yes	N/A
Q2YX16	QOX3_STAAB	1, ., 1, 0, ., 3, ., -	0.3882	0.9709	0.8308	yes	N/A
Q5HQB1	QOX3_STAEQ	1, ., 1, 0, ., 3, ., -	0.3727	0.9767	0.8358	yes	N/A
Q2FZK1	QOX3_STAA8	1, ., 1, 0, ., 3, ., -	0.3882	0.9709	0.8308	yes	N/A
P63857	COX3_MYCBO	1, ., 9, ., 3, ., 1	0.3274	0.9534	0.8078	yes	N/A
Q99V38	QOX3_STAAM	1, ., 1, 0, ., 3, ., -	0.3882	0.9709	0.8308	yes	N/A
Q9AEL8	COX3_CORGL	1, ., 9, ., 3, ., 1	0.3352	0.9709	0.8146	yes	N/A
Q8K995	CYOC_BUCAP	1, ., 1, 0, ., 3, ., -	0.4561	0.9941	0.9047	yes	N/A
Q89AA5	CYOC_BUCBP	1, ., 1, 0, ., 3, ., -	0.4852	0.9825	0.8711	yes	N/A
Q5YZ19	COX3_NOCFA	1, ., 9, ., 3, ., 1	0.3313	0.9476	0.8029	yes	N/A
Q6GAF4	QOX3_STAAS	1, ., 1, 0, ., 3, ., -	0.3882	0.9709	0.8308	yes	N/A
Q7A183	QOX3_STAAW	1, ., 1, 0, ., 3, ., -	0.3882	0.9709	0.8308	yes	N/A
P34958	QOX3_BACSU	1, ., 1, 0, ., 3, ., -	0.3988	0.9767	0.8235	yes	N/A
E0TW65	QOX3_BACPZ	1, ., 1, 0, ., 3, ., -	0.4047	0.9767	0.8235	yes	N/A
P0ABJ5	CYOC_SHIFL	1, ., 1, 0, ., 3, ., -	0.5029	0.9941	0.8382	yes	N/A
P0ABJ4	CYOC_ECOL6	1, ., 1, 0, ., 3, ., -	0.5029	0.9941	0.8382	yes	N/A
P0ABJ3	CYOC_ECOLI	1, ., 1, 0, ., 3, ., -	0.5029	0.9941	0.8382	N/A	N/A
Q6GI25	QOX3_STAAR	1, ., 1, 0, ., 3, ., -	0.3882	0.9709	0.8308	yes	N/A
Q8CPP8	QOX3_STAES	1, ., 1, 0, ., 3, ., -	0.3727	0.9767	0.8358	yes	N/A
O69582	COX3_MYCLE	1, ., 9, ., 3, ., 1	0.3214	0.9651	0.8217	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.10.3	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	172
TIGR02842	180	TIGR02842, CyoC, cytochrome o ubiquinol oxidase, s	1e-70
cd02863	186	cd02863, Ubiquinol_oxidase_III, Ubiquinol oxidase	1e-67
PRK10663	204	PRK10663, PRK10663, cytochrome o ubiquinol oxidase	5e-57
COG1845	209	COG1845, CyoC, Heme/copper-type cytochrome/quinol	2e-53
TIGR02897	190	TIGR02897, QoxC, cytochrome aa3 quinol oxidase, su	7e-38
cd00386	183	cd00386, Heme_Cu_Oxidase_III_like, Heme-copper oxi	6e-37
cd02862	186	cd02862, NorE_like, NorE_like subfamily of heme-co	3e-22
cd01665	243	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase s	2e-17
MTH00141	259	MTH00141, COX3, cytochrome c oxidase subunit III;	6e-15
cd02864	202	cd02864, Heme_Cu_Oxidase_III_1, Heme-copper oxidas	1e-14
pfam00510	258	pfam00510, COX3, Cytochrome c oxidase subunit III	2e-14
cd02865	184	cd02865, Heme_Cu_Oxidase_III_2, Heme-copper oxidas	2e-13
MTH00118	261	MTH00118, COX3, cytochrome c oxidase subunit III;	3e-13
MTH00189	260	MTH00189, COX3, cytochrome c oxidase subunit III;	4e-13
MTH00130	261	MTH00130, COX3, cytochrome c oxidase subunit III;	1e-12
MTH00024	261	MTH00024, COX3, cytochrome c oxidase subunit III;	6e-12
MTH00075	261	MTH00075, COX3, cytochrome c oxidase subunit III;	6e-12
MTH00039	260	MTH00039, COX3, cytochrome c oxidase subunit III;	7e-12
MTH00155	255	MTH00155, COX3, cytochrome c oxidase subunit III;	1e-11
MTH00099	261	MTH00099, COX3, cytochrome c oxidase subunit III;	2e-11
MTH00219	262	MTH00219, COX3, cytochrome c oxidase subunit III;	9e-11
MTH00009	259	MTH00009, COX3, cytochrome c oxidase subunit III;	2e-10
MTH00052	262	MTH00052, COX3, cytochrome c oxidase subunit III;	2e-10
MTH00028	297	MTH00028, COX3, cytochrome c oxidase subunit III;	7e-09
MTH00083	256	MTH00083, COX3, cytochrome c oxidase subunit III;	3e-08
PLN02194	265	PLN02194, PLN02194, cytochrome-c oxidase	1e-06
MTH00049	215	MTH00049, COX3, cytochrome c oxidase subunit III;	2e-06

>gnl|CDD|131889 TIGR02842, CyoC, cytochrome o ubiquinol oxidase, subunit III

 Score =  210 bits (538), Expect = 1e-70
 Identities = 95/171 (55%), Positives = 126/171 (73%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDC++F++LFA YAVL +N A GP+  +IF LP V + T +LLLSS++ GFA++   KK
Sbjct: 10  MSDCILFATLFATYAVLSNNTAGGPSGKEIFDLPFVLVETFLLLLSSITFGFAMLAMNKK 69

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
               VI WL+IT LLG  F+ +E+ EF  LI    GP RSAFLS+FF LVG HGLH+  G
Sbjct: 70  NKKMVILWLAITFLLGLGFIGMEIYEFYHLIAEGNGPDRSAFLSAFFTLVGTHGLHVTSG 129

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
           +IW+I +I+Q+ KY L   N+RR+ CLS+FWHFLDI+WI +FTF+YL+G L
Sbjct: 130 LIWIIVMIIQVYKYGLTKINRRRLACLSLFWHFLDIVWICVFTFVYLLGVL 180

Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant [Energy metabolism, Electron transport]. Length = 180

>gnl|CDD|239214 cd02863, Ubiquinol_oxidase_III, Ubiquinol oxidase subunit III subfamily

 Score =  203 bits (519), Expect = 1e-67
 Identities = 92/169 (54%), Positives = 120/169 (71%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDC++F++LFA YAVL  N A GP   ++F+LP V + T +LLLSS +CG A+I   K 
Sbjct: 18  MSDCILFATLFATYAVLSGNTAGGPPGHELFELPLVFIETFLLLLSSFTCGLAMIAMNKN 77

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
               VI WL IT LLG  FV +E+ EF  LI    GP RSAFLS+FF LVG HGLH+ FG
Sbjct: 78  NKKKVILWLIITFLLGLGFVGMEIYEFHHLIAEGAGPDRSAFLSAFFTLVGTHGLHVTFG 137

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
           +IW++ +I+Q+KK  L  +  RR+ CLS+FWHFLDI+WI +FT +YL+G
Sbjct: 138 LIWILVMIIQLKKRGLTPDTARRLFCLSLFWHFLDIVWIFVFTVVYLLG 186

Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex. Length = 186

>gnl|CDD|182628 PRK10663, PRK10663, cytochrome o ubiquinol oxidase subunit III; Provisional

 Score =  177 bits (450), Expect = 5e-57
 Identities = 85/171 (49%), Positives = 116/171 (67%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDC++FS LFA YAVL +  A GPT   IF+LP V + T +LL SS++ G A I   K 
Sbjct: 34  MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKN 93

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
             + VI WL++T L G  F+ +E+ EF  LI    GP RS FLS+FF LVG HGLH+  G
Sbjct: 94  NKSQVISWLALTFLFGAGFIGMEIYEFHHLIVEGMGPDRSGFLSAFFALVGTHGLHVTSG 153

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
           +IW+  L++Q+ +  L   N+ RI+CLS+FWHFLD++WI +FT +YL+G +
Sbjct: 154 LIWMAVLMVQVARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM 204

Length = 204

>gnl|CDD|224758 COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]

 Score =  168 bits (427), Expect = 2e-53
 Identities = 75/172 (43%), Positives = 105/172 (61%), Gaps = 3/172 (1%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTA-IQIFKLPSVALNTIILLLSSLSCGFAIIQAQK 59
           MS+  +F+SLFA Y V   + A  P A  ++F LP V +NT ILL SS +CG A+   ++
Sbjct: 40  MSEVALFASLFAAYFVARASTAGWPPAGTELFDLPLVLINTFILLSSSFTCGLAVHALRR 99

Query: 60  KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIF 119
               G   WL +T LLG  FV  +L E+  LI   FG   SAF S+FF+L G HGLH+ F
Sbjct: 100 GNRKGARAWLLLTLLLGAAFVGGQLYEYYHLIA--FGLTASAFGSAFFLLTGFHGLHVTF 157

Query: 120 GIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
           G+IWL+ L+ +I +  L   N   +   S++WHF+D++WI +FT +YL G L
Sbjct: 158 GLIWLLVLLWRIARRGLTTRNHTGVEAASLYWHFVDVVWIFLFTLVYLWGAL 209

Length = 209

>gnl|CDD|131943 TIGR02897, QoxC, cytochrome aa3 quinol oxidase, subunit III

 Score =  128 bits (322), Expect = 7e-38
 Identities = 68/165 (41%), Positives = 103/165 (62%), Gaps = 1/165 (0%)

Query: 6   IFSSLFAIYAVLGH-NYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNG 64
           +F++LFA Y VL H     G    ++F+LP V + T +LL SS +CG AI + +K+    
Sbjct: 24  LFATLFATYLVLQHGGDYAGKMPAELFELPLVLIMTFLLLFSSFTCGIAIYEMRKENQKL 83

Query: 65  VIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWL 124
           ++FW+ IT LLG  FV  E+ EF    +    P   ++ SSFFVL+G HG H+  GI+W 
Sbjct: 84  MMFWMIITLLLGAGFVGFEIYEFAHYASEGVTPQIGSYWSSFFVLLGTHGCHVTLGIVWA 143

Query: 125 ITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
           I L++QI++  L      ++  +S++WHFLD++W+ IFT +YLIG
Sbjct: 144 ICLLIQIQRRGLTPYTAPKVFIVSLYWHFLDVVWVFIFTAVYLIG 188

This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site [Energy metabolism, Electron transport]. Length = 190

>gnl|CDD|238227 cd00386, Heme_Cu_Oxidase_III_like, Heme-copper oxidase subunit III

 Score =  125 bits (316), Expect = 6e-37
 Identities = 49/169 (28%), Positives = 92/169 (54%), Gaps = 4/169 (2%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGP-TAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQK 59
           +S+ ++F S F  Y     +        +    LP +  NT++L  SS++   A + A++
Sbjct: 18  LSEVMLFGSFFWAYFHSRLSPPVEFGAGLDPLDLPLLNTNTLLLSGSSVTWAHASLAARR 77

Query: 60  KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIF 119
                   WL +T LLG  F+ L+  E+  LI   F    S F S+FF+L G HGLH+I 
Sbjct: 78  GNRKKARLWLLLTILLGLAFLGLQAYEYSHLI---FTISDSVFGSTFFLLTGFHGLHVII 134

Query: 120 GIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
           G+I+L+ +++++++ +    +   +   +++WHF+D++W+ +F  +YL 
Sbjct: 135 GLIFLLVVLIRLRRGHFTPRHHLGLEAAALYWHFVDVVWLFLFPLVYLW 183

Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex. It also includes NorE which has been speculated to be a subunit of nitric oxide reductase. Some archaebacterial cytochrome oxidases lack subunit III. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that archaea acquired heme-copper oxidases through gene transfer from gram-positive bacteria. Length = 183

>gnl|CDD|239213 cd02862, NorE_like, NorE_like subfamily of heme-copper oxidase subunit III

 Score = 87.7 bits (218), Expect = 3e-22
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 2   SDCLIFSSLFAIYAVLGHNYAEG-PTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           S+ L F +LF  YAV    Y E          L   ALNT++LL SS +   A+  A+  
Sbjct: 19  SELLAFGALFIAYAVYRALYPELFAAGSAHLDLLLGALNTLVLLTSSFTVALAVRAARAG 78

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
                  WL+   LLG  F++++  E+   I     P    F + +F+L G H LH++ G
Sbjct: 79  RRRRARRWLAAAVLLGLVFLVIKYFEYAHKIAAGIDPDAGLFFTLYFLLTGFHLLHVLIG 138

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLI 168
           +  L+ +  + ++      +   +   +++WH +D++WI +F  +YL+
Sbjct: 139 LGILLWVAWRARRGRYSARDYEGVEAAALYWHMVDLVWIVLFPLLYLV 186

Heme-copper oxidases include cytochrome c and ubiquinol oxidases. Alcaligenes faecalis norE is found in a gene cluster containing norCB. norCB encodes the cytochrome c and cytochrome b subunits of nitric oxide reductase (NOR). Based on this and on its similarity to subunit III of cytochrome c oxidase (CcO) and ubiquinol oxidase, NorE has been speculated to be a subunit of NOR. Length = 186

>gnl|CDD|238834 cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III

 Score = 76.4 bits (189), Expect = 2e-17
 Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 5/143 (3%)

Query: 24  GPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILE 83
           G   +  F +P   LNTIILL S  +  +A            I  L +T LLG +F  L+
Sbjct: 104 GIEPLNPFGIP--LLNTIILLSSGATVTWAHHALLLGNRKKAILGLILTILLGVYFTGLQ 161

Query: 84  LNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRR 143
             E+ E    +F    S + S+FF+L G HGLH+I G I+L   ++++ K +    +   
Sbjct: 162 AYEYYEA---SFTISDSVYGSTFFMLTGFHGLHVIIGTIFLTVCLIRLLKGHFSSNHHLG 218

Query: 144 IICLSMFWHFLDIIWIGIFTFIY 166
                 +WHF+D++W+ +F F+Y
Sbjct: 219 FEAAIWYWHFVDVVWLFLFVFVY 241

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool." These phospholipids are believed to intrinsic constituents similar to cofactors of the enzyme. Length = 243

>gnl|CDD|177199 MTH00141, COX3, cytochrome c oxidase subunit III; Provisional

 Score = 69.9 bits (172), Expect = 6e-15
 Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 3/132 (2%)

Query: 38  LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
           LNT +LL S ++  +A     +      +  L +T +LG +F  L+  E+ E    +F  
Sbjct: 130 LNTAVLLASGVTVTWAHHSLMEGDYKSALQGLGLTIILGVYFTFLQAGEYYEA---SFSI 186

Query: 98  WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDII 157
               + S+FFVL G HGLH+I G  +L+  ++++   +    +       + +WHF+D++
Sbjct: 187 ADGVYGSTFFVLTGFHGLHVIIGTTFLLVCLVRLLLGHFSTNHHFGFEAAAWYWHFVDVV 246

Query: 158 WIGIFTFIYLIG 169
           W+ ++  IY  G
Sbjct: 247 WLFLYLSIYWWG 258

Length = 259

>gnl|CDD|239215 cd02864, Heme_Cu_Oxidase_III_1, Heme-copper oxidase subunit III subfamily

 Score = 67.9 bits (166), Expect = 1e-14
 Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 17/184 (9%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFK----------LPSVALNTIILLLSSLSC 50
           +SD  IFSS    Y     +  E                   L  +A+ T IL+ SS + 
Sbjct: 18  LSDAFIFSSFLIAYMTARISTTEPWPLPSDVFALRIGHFNIPLVLIAIMTFILITSSGTM 77

Query: 51  GFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELI-NRNFGPWRSA-----FLS 104
             A+    +         +  T LLG  FV ++  E+ +LI      PW +      F +
Sbjct: 78  AMAVNFGYRGNRKAAARLMLATALLGATFVGMQAFEWTKLIVEEGVRPWGNPWGAAQFGA 137

Query: 105 SFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRII-CLSMFWHFLDIIWIGIFT 163
           SFF++ G HG H+  G+I+LI +  ++ +       +  I+    ++WHF+D++W+ IF 
Sbjct: 138 SFFMITGFHGTHVTIGVIYLIIIARKVWRGKYQRIGRYEIVEIAGLYWHFVDLVWVFIFA 197

Query: 164 FIYL 167
           F YL
Sbjct: 198 FFYL 201

Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Length = 202

>gnl|CDD|215961 pfam00510, COX3, Cytochrome c oxidase subunit III

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 38  LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
           LNTIILL S ++  +A          G +  L +T LL  +F  L+     E     F  
Sbjct: 129 LNTIILLSSGVTVTWAHHSLISGNRKGALQGLFLTILLAVYFTGLQA---YEYYEAPFTI 185

Query: 98  WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDII 157
               + S+FF+  G HGLH+I G I+L+  +L++  Y+    +         +WHF+D++
Sbjct: 186 SDGVYGSTFFMATGFHGLHVIIGTIFLLVCLLRLLNYHFTSNHHFGFEAAIWYWHFVDVV 245

Query: 158 WIGIFTFIYLIG 169
           W+ ++  IY  G
Sbjct: 246 WLFLYVSIYWWG 257

Length = 258

>gnl|CDD|239216 cd02865, Heme_Cu_Oxidase_III_2, Heme-copper oxidase subunit III subfamily

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 37/160 (23%), Positives = 79/160 (49%), Gaps = 1/160 (0%)

Query: 7   FSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVI 66
           F+ L + Y +   +    P A  +     ++LNT +L  SS++  +A   A++       
Sbjct: 24  FALLISAYFMRMTSGDWQPGA-PLPLPNLLSLNTAVLAASSVAMQWARRAARRNRRVLAR 82

Query: 67  FWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLIT 126
             L++   L   F+  +L  +  L +  +GP  +   S F++L G+HGLH+I G++ L  
Sbjct: 83  LGLALAGALALAFLAGQLLAWHALNDAGYGPTSNPAGSFFYLLTGLHGLHVIGGLVALAI 142

Query: 127 LILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIY 166
           ++  + + +     +  +   +++WHFL ++W+ +   +Y
Sbjct: 143 VLAGLIRGHYGPRRRLPVELCALYWHFLLLVWLVLLALLY 182

Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Length = 184

>gnl|CDD|177179 MTH00118, COX3, cytochrome c oxidase subunit III; Provisional

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 9/136 (6%)

Query: 38  LNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRN 94
           LNT +LL S ++  +A   I++  +K     I  L++T LLG +F  L+  E+ E     
Sbjct: 132 LNTAVLLASGVTVTWAHHSIMEGNRK---QAIQALTLTILLGLYFTALQAMEYYE---AP 185

Query: 95  FGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFL 154
           F    S + S+FFV  G HGLH+I G  +LI  +L++ K++    +       + +WHF+
Sbjct: 186 FTISDSVYGSTFFVATGFHGLHVIIGSTFLIVCLLRLIKFHFTTNHHFGFEAAAWYWHFV 245

Query: 155 DIIWIGIFTFIYLIGT 170
           D++W+ ++  IY  G+
Sbjct: 246 DVVWLFLYISIYWWGS 261

Length = 261

>gnl|CDD|177238 MTH00189, COX3, cytochrome c oxidase subunit III; Provisional

 Score = 64.6 bits (158), Expect = 4e-13
 Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 38  LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
           LNT +LL S ++  +A     +      I  L++T +LG +F +L+  E+ E     F  
Sbjct: 131 LNTAVLLSSGVTVTWAHHSLMEGNRKEAIQALTLTVILGVYFTLLQAMEYYE---APFTI 187

Query: 98  WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDII 157
             S + S+FFV  G HGLH+I G  +L+  +L+  + +    +       + +WHF+D++
Sbjct: 188 ADSVYGSTFFVATGFHGLHVIIGSTFLLVCLLRQIQGHFTSSHHFGFEAAAWYWHFVDVV 247

Query: 158 WIGIFTFIY 166
           W+ ++  IY
Sbjct: 248 WLFLYVSIY 256

Length = 260

>gnl|CDD|177188 MTH00130, COX3, cytochrome c oxidase subunit III; Provisional

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 11/150 (7%)

Query: 24  GPTAIQIFKLPSVALNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFV 80
           G T +  F++P   LNT +LL S ++  +A   I++ ++K     I  L++T LLGF+F 
Sbjct: 120 GITTLDPFEVP--LLNTAVLLASGVTVTWAHHSIMEGERKQA---IQSLTLTILLGFYFT 174

Query: 81  ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILEN 140
            L+  E+ E     F      + S+FFV  G HGLH+I G  +L   +L+  +Y+   E+
Sbjct: 175 FLQAMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEH 231

Query: 141 QRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
                  + +WHF+D++W+ ++  IY  G+
Sbjct: 232 HFGFEAAAWYWHFVDVVWLFLYISIYWWGS 261

Length = 261

>gnl|CDD|214403 MTH00024, COX3, cytochrome c oxidase subunit III; Validated

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 9/136 (6%)

Query: 38  LNTIILLLSSLS---CGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRN 94
           LNT +LL S  +      AII  ++K     I  L +T  LG  F  L+  E+ E     
Sbjct: 132 LNTAVLLSSGATVTWAHHAIISGKRKEA---ILGLFLTVFLGVLFTGLQAIEYYE---AP 185

Query: 95  FGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFL 154
           F    S + S+FFV  G HGLH+I G  +L   +L++                S +WHF+
Sbjct: 186 FAISDSVYGSTFFVATGFHGLHVIIGTTFLFVCLLRLLSNQFTRRQHVGFEAASWYWHFV 245

Query: 155 DIIWIGIFTFIYLIGT 170
           D++W+ ++  IY  G+
Sbjct: 246 DVVWLFLYLCIYWWGS 261

Length = 261

>gnl|CDD|177146 MTH00075, COX3, cytochrome c oxidase subunit III; Provisional

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 11/150 (7%)

Query: 24  GPTAIQIFKLPSVALNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFV 80
           G T +  F++P   LNT +LL S ++  +A   I+Q  +K     I  L++T +LG +F 
Sbjct: 120 GITPLDPFEVP--LLNTAVLLASGVTVTWAHHSIMQGNRK---EAIQSLALTIILGLYFT 174

Query: 81  ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILEN 140
           +L+  E+ E     F      + S+FFV  G HGLH+I G ++L+  +L+   ++   ++
Sbjct: 175 LLQAMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIGSLFLLVCLLRQINFHFTSQH 231

Query: 141 QRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
                  + +WHF+D++W+ ++  IY  G+
Sbjct: 232 HFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261

Length = 261

>gnl|CDD|177114 MTH00039, COX3, cytochrome c oxidase subunit III; Validated

 Score = 61.3 bits (149), Expect = 7e-12
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 38  LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
           LNT +LL S ++  ++     +      I  L +T LLG +F  L+  E+ +     F  
Sbjct: 131 LNTAVLLSSGVTITWSHHSILEGNRTEAIQALFLTVLLGLYFTALQAWEYYD---APFTI 187

Query: 98  WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDII 157
             S + S+FFV  G HGLH+I G  +L   + ++  ++    +       + +WHF+D++
Sbjct: 188 ADSVYGSTFFVATGFHGLHVIIGTTFLAVCLFRLINHHFSNNHHFGFEAAAWYWHFVDVV 247

Query: 158 WIGIFTFIYLIG 169
           W+ ++  IY  G
Sbjct: 248 WLFLYVCIYWWG 259

Length = 260

>gnl|CDD|214439 MTH00155, COX3, cytochrome c oxidase subunit III; Provisional

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 3/129 (2%)

Query: 38  LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
           LNTIILL S ++  +A     +         L  T +LG +F +L+  E+ E     F  
Sbjct: 130 LNTIILLSSGVTVTWAHHSLMENNYKQATQSLFFTIILGIYFTMLQAYEYYEA---PFTI 186

Query: 98  WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDII 157
             S + S+FF+  G HGLH+I G  +L+  +++    +    +       + +WHF+D++
Sbjct: 187 ADSVYGSTFFMATGFHGLHVIIGTTFLLVCLIRHLNNHFSSNHHFGFEAAAWYWHFVDVV 246

Query: 158 WIGIFTFIY 166
           W+ ++  IY
Sbjct: 247 WLFLYISIY 255

Length = 255

>gnl|CDD|177161 MTH00099, COX3, cytochrome c oxidase subunit III; Validated

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)

Query: 38  LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
           LNT +LL S +S  +A     +     ++  L IT LLG +F +L+ +E+ E     F  
Sbjct: 132 LNTSVLLASGVSITWAHHSLMEGNRKHMLQALFITILLGLYFTLLQASEYYE---APFTI 188

Query: 98  WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDII 157
               + S+FF+  G HGLH+I G  +LI   L+  K++    +       + +WHF+D++
Sbjct: 189 SDGIYGSTFFMATGFHGLHVIIGSTFLIVCFLRQLKFHFTSNHHFGFEAAAWYWHFVDVV 248

Query: 158 WIGIFTFIYLIGT 170
           W+ ++  IY  G+
Sbjct: 249 WLFLYVSIYWWGS 261

Length = 261

>gnl|CDD|214464 MTH00219, COX3, cytochrome c oxidase subunit III; Provisional

 Score = 58.3 bits (141), Expect = 9e-11
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 3/133 (2%)

Query: 38  LNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
           LNT +LL S ++  +A     +         L  T LLG +F +L+  E++E    +F  
Sbjct: 133 LNTAVLLASGVTVTWAHHSLMESNHKEAQQGLLFTILLGLYFTMLQGMEYLE---ASFSI 189

Query: 98  WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDII 157
             S + ++FFV  G HGLH+I G I+L    ++    +    +       + +WHF+D++
Sbjct: 190 SDSVYGTTFFVATGFHGLHVIIGTIFLFVCFMRGLMLHFSKNHHFGFEAAAWYWHFVDVV 249

Query: 158 WIGIFTFIYLIGT 170
           W+ ++  IY  G+
Sbjct: 250 WLFLYVSIYWWGS 262

Length = 262

>gnl|CDD|177101 MTH00009, COX3, cytochrome c oxidase subunit III; Validated

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 10/150 (6%)

Query: 25  PTAIQIFKLPSVAL-NTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFV 80
           PT I+     SV L NT +LL S ++  +A   +I+  +         L +T LLG +F 
Sbjct: 116 PTGIEPLNPFSVPLLNTAVLLASGVTVTWAHHSLIEGDRP---EATQALILTVLLGAYFT 172

Query: 81  ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILEN 140
            L+  E+IE     F    S + S+FFV  G HGLH++ G  +L   +L+   ++    +
Sbjct: 173 FLQAGEYIE---APFTIADSVYGSTFFVATGFHGLHVLIGSSFLFVCLLRTWSHHFSTGH 229

Query: 141 QRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
                  + +WHF+D++WI ++  IY  G+
Sbjct: 230 HFGFEAAAWYWHFVDVVWIFLYLCIYWWGS 259

Length = 259

>gnl|CDD|164623 MTH00052, COX3, cytochrome c oxidase subunit III; Provisional

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 38  LNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRN 94
           LNT +LL S  +  +A   II  ++K     I  L++T  LG  F  L+  E+ E     
Sbjct: 133 LNTAVLLSSGATVTWAHHGIISGKRKEA---IIGLALTVALGLLFTGLQAMEYYE---AP 186

Query: 95  FGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFL 154
           F    S + S+FFV  G HG H++ G  +L+  + ++  +     +       + +WHF+
Sbjct: 187 FTISDSVYGSTFFVTTGAHGGHVLIGSSFLLVCLFRLINHQFTRHHHFGFEAAAWYWHFV 246

Query: 155 DIIWIGIFTFIYLIGT 170
           D++W+ +F F+Y  G+
Sbjct: 247 DVVWLFLFIFMYWWGS 262

Length = 262

>gnl|CDD|214406 MTH00028, COX3, cytochrome c oxidase subunit III; Provisional

 Score = 53.1 bits (127), Expect = 7e-09
 Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 69  LSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLI 128
           L +T LLG  F  L+  E+ E    +F    S + S+FF+L G HGLH++ G  +LI   
Sbjct: 199 LLMTILLGIIFTGLQAFEYKE---ASFAISDSVYGSTFFMLTGTHGLHVLVGTTFLIVCF 255

Query: 129 LQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
           +++        +   +     +WHF+D++W+ ++ F+Y  G+
Sbjct: 256 IRLLSNQFTNSHHLGLEAAIWYWHFVDVVWLFLYVFVYWWGS 297

Length = 297

>gnl|CDD|177150 MTH00083, COX3, cytochrome c oxidase subunit III; Provisional

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 10/132 (7%)

Query: 38  LNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRN 94
           LNTIILL S +S  ++   +  + K   N ++     T  LG +F   +L E+ E    +
Sbjct: 128 LNTIILLSSGVSVTWSHHSLCLSNKSCTNSLLL----TCFLGLYFTSFQLMEYKEA---S 180

Query: 95  FGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFL 154
           F    S + S F++  G HG+H++ G ++L+  +L++ K +    +   +    ++WHF+
Sbjct: 181 FSISDSIYGSIFYLGTGFHGIHVLCGGLFLLFNLLRLLKSHFNYNHHLGLEFAILYWHFV 240

Query: 155 DIIWIGIFTFIY 166
           D++W+ +F F+Y
Sbjct: 241 DVVWLFLFVFVY 252

Length = 256

>gnl|CDD|177845 PLN02194, PLN02194, cytochrome-c oxidase

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 15/138 (10%)

Query: 38  LNTIILLLSSLSCGFAIIQAQKKYVNG----VIFWLSITTLLGFFFVILELNEFIELINR 93
           LNT IL     S G A+  A    + G     ++ L  T LL   F   +  E+ +    
Sbjct: 135 LNTPILP----SSGAAVTWAHHAILAGKEKRAVYALVATVLLALVFTGFQGMEYYQ---A 187

Query: 94  NFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKY--NLILENQRRIICLSMFW 151
            F    S + S+FF+  G HG H+I G ++LI  I  I++Y  +L  E+       + +W
Sbjct: 188 PFTISDSIYGSTFFLATGFHGFHVIIGTLFLI--ICGIRQYLGHLTKEHHVGFEAAAWYW 245

Query: 152 HFLDIIWIGIFTFIYLIG 169
           HF+D++W+ +F  IY  G
Sbjct: 246 HFVDVVWLFLFVSIYWWG 263

Length = 265

>gnl|CDD|177124 MTH00049, COX3, cytochrome c oxidase subunit III; Validated

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 67  FWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLIT 126
            +L +T LLG  FV+L++ EF E          S++ +S F  VG+H  H++ G++ L T
Sbjct: 121 LFLYLTILLGLLFVVLQVFEFEES---GVNSLDSSYYASCFCTVGLHFSHVVLGVVGLST 177

Query: 127 LILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYL 167
           L+L             R   L+ +WHF+D IW+ ++  +Y+
Sbjct: 178 LLL----VGSSSFGVYRSTVLTWYWHFVDYIWLLVYLIVYV 214

Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
COG1845	209	CyoC Heme/copper-type cytochrome/quinol oxidase, s	100.0
TIGR02842	180	CyoC cytochrome o ubiquinol oxidase, subunit III.	100.0
cd02863	186	Ubiquinol_oxidase_III Ubiquinol oxidase subunit II	100.0
PRK10663	204	cytochrome o ubiquinol oxidase subunit III; Provis	100.0
TIGR02897	190	QoxC cytochrome aa3 quinol oxidase, subunit III. T	100.0
cd02862	186	NorE_like NorE_like subfamily of heme-copper oxida	100.0
cd02865	184	Heme_Cu_Oxidase_III_2 Heme-copper oxidase subunit	100.0
PLN02194	265	cytochrome-c oxidase	100.0
cd01665	243	Cyt_c_Oxidase_III Cytochrome c oxidase subunit III	100.0
MTH00189	260	COX3 cytochrome c oxidase subunit III; Provisional	100.0
MTH00219	262	COX3 cytochrome c oxidase subunit III; Provisional	100.0
MTH00024	261	COX3 cytochrome c oxidase subunit III; Validated	100.0
MTH00009	259	COX3 cytochrome c oxidase subunit III; Validated	100.0
MTH00052	262	COX3 cytochrome c oxidase subunit III; Provisional	100.0
MTH00039	260	COX3 cytochrome c oxidase subunit III; Validated	100.0
MTH00130	261	COX3 cytochrome c oxidase subunit III; Provisional	100.0
PF00510	258	COX3: Cytochrome c oxidase subunit III This family	100.0
MTH00075	261	COX3 cytochrome c oxidase subunit III; Provisional	100.0
MTH00141	259	COX3 cytochrome c oxidase subunit III; Provisional	100.0
MTH00099	261	COX3 cytochrome c oxidase subunit III; Validated	100.0
MTH00083	256	COX3 cytochrome c oxidase subunit III; Provisional	100.0
MTH00118	261	COX3 cytochrome c oxidase subunit III; Provisional	100.0
cd00386	183	Heme_Cu_Oxidase_III_like Heme-copper oxidase subun	100.0
MTH00155	255	COX3 cytochrome c oxidase subunit III; Provisional	100.0
cd02864	202	Heme_Cu_Oxidase_III_1 Heme-copper oxidase subunit	100.0
MTH00028	297	COX3 cytochrome c oxidase subunit III; Provisional	100.0
MTH00049	215	COX3 cytochrome c oxidase subunit III; Validated	100.0
KOG4664|consensus	261		100.0
PF04238	133	DUF420: Protein of unknown function (DUF420); Inte	98.55
COG2322	177	Predicted membrane protein [Function unknown]	98.47

>COG1845 CyoC Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]

Probab=100.00  E-value=6e-49  Score=304.23  Aligned_cols=168  Identities=44%  Similarity=0.798  Sum_probs=159.7

Q ss_pred             ChHHHHHHHHHHHHHHHhccCCCCCcc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYAEGPTA-IQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFF   79 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~~~~~~-~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~F   79 (172)
                      +||+++|++++.+|+++|.++++||++ .+..+++.+.+||.+|++||.++..|+.+.||||+|+.+.++.+|+++|++|
T Consensus        40 ~SE~~~Fa~lfaay~~~~~~~~~wp~~~~~~~~~~l~~inT~iLl~SS~t~~~A~~a~~~~~~~~~~~wL~~T~lLG~~F  119 (209)
T COG1845          40 MSEVALFASLFAAYFVARASTAGWPPAGTELFDLPLVLINTFILLSSSFTCGLAVHALRRGNRKGARAWLLLTLLLGAAF  119 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999998889877 4677888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHH
Q psy2389          80 VILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWI  159 (172)
Q Consensus        80 l~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl  159 (172)
                      +++|++||.++.+  .+|++|+|+|.||++||+|++||..|++++.++.+|..+++.+++++.++|++++||||||+||+
T Consensus       120 v~~q~yE~~hl~~--~~~~~~~f~S~Ff~ltG~HGlHV~~Gli~l~~~~~r~~~~g~~~~~~~~v~~~s~YWHFvDvVWi  197 (209)
T COG1845         120 VGGQLYEYYHLIA--FGLTASAFGSAFFLLTGFHGLHVTFGLIWLLVLLWRIARRGLTTRNHTGVEAASLYWHFVDVVWI  197 (209)
T ss_pred             HHHHHHHHHHHHh--cCcCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHH
Confidence            9999999999876  89999999999999999999999999999999999988877788899999999999999999999


Q ss_pred             HHHHHHHHhcc
Q psy2389         160 GIFTFIYLIGT  170 (172)
Q Consensus       160 ~~~~~~yl~~~  170 (172)
                      ++|.++|++|.
T Consensus       198 ~lF~~vYl~g~  208 (209)
T COG1845         198 FLFTLVYLWGA  208 (209)
T ss_pred             HHHHHHHHHhc
Confidence            99999999984

>TIGR02842 CyoC cytochrome o ubiquinol oxidase, subunit III

Probab=100.00  E-value=4.1e-48  Score=295.94  Aligned_cols=171  Identities=56%  Similarity=1.026  Sum_probs=162.5

Q ss_pred             ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV   80 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl   80 (172)
                      +||+++|++++++|+++|.+.|++|++.++++++.+.+||++|++||.+++.|+++.|++++++.+.++..|+++|.+|+
T Consensus        10 ~se~~~F~~l~~ay~~~~~~~~~~~~~~~~~~l~~~~~nT~vLl~Ss~~~~~A~~a~~~~~~~~~~~~L~~t~~lG~~Fl   89 (180)
T TIGR02842        10 MSDCILFATLFATYAVLSNNTAGGPSGKEIFDLPFVLVETFLLLLSSITFGFAMLAMNKKNKKMVILWLAITFLLGLGFI   89 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999988777766666778888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389          81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG  160 (172)
Q Consensus        81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~  160 (172)
                      +.|..||.++.++|+++++|+|+|.||++||+|++||++|++++.++..|.++++.+++++.++|++++||||||++|++
T Consensus        90 ~~Q~~E~~~l~~~g~~~~~~~~~s~fy~lTGlH~lHVi~Gli~l~~~~~~~~~~~~~~~~~~~~e~~~~YWHFvD~vWl~  169 (180)
T TIGR02842        90 GMEIYEFYHLIAEGNGPDRSAFLSAFFTLVGTHGLHVTSGLIWIIVMIIQVYKYGLTKINRRRLACLSLFWHFLDIVWIC  169 (180)
T ss_pred             HHHHHHHHHHHhCCCCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccC
Q psy2389         161 IFTFIYLIGTL  171 (172)
Q Consensus       161 ~~~~~yl~~~~  171 (172)
                      +|+++|++|++
T Consensus       170 lf~~lYl~~~~  180 (180)
T TIGR02842       170 VFTFVYLLGVL  180 (180)
T ss_pred             HHHHHHHHhcC
Confidence            99999999853

Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.

>cd02863 Ubiquinol_oxidase_III Ubiquinol oxidase subunit III subfamily

Probab=100.00  E-value=1.8e-47  Score=293.73  Aligned_cols=169  Identities=54%  Similarity=1.023  Sum_probs=161.4

Q ss_pred             ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV   80 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl   80 (172)
                      +||+++|++++++|+++|.++|++|++.++++++.+.+||++|++||.+++.|+++.|++++++.+.++..|+++|.+|+
T Consensus        18 ~sE~~~F~~l~~ay~~~~~~~~~~~~~~~~~~~~~~~~nT~vLl~SS~~~~~a~~a~~~~~~~~~~~~L~~t~~lG~~Fl   97 (186)
T cd02863          18 MSDCILFATLFATYAVLSGNTAGGPPGHELFELPLVFIETFLLLLSSFTCGLAMIAMNKNNKKKVILWLIITFLLGLGFV   97 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHccccCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999987777777766778888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389          81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG  160 (172)
Q Consensus        81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~  160 (172)
                      +.|..||.++.++|+++++|+|+|.||++||+|++||++|++++.+++.|.++++.+++++.++|++++||||||++|++
T Consensus        98 ~~q~~E~~~l~~~g~~~~~~~~~s~fy~ltg~H~lHV~~Gli~l~~~~~~~~~~~~~~~~~~~~~~~~~YWHFvD~vWl~  177 (186)
T cd02863          98 GMEIYEFHHLIAEGAGPDRSAFLSAFFTLVGTHGLHVTFGLIWILVMIIQLKKRGLTPDTARRLFCLSLFWHFLDIVWIF  177 (186)
T ss_pred             HHHHHHHHHHHhCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy2389         161 IFTFIYLIG  169 (172)
Q Consensus       161 ~~~~~yl~~  169 (172)
                      +|+++|+++
T Consensus       178 lf~~lYl~~  186 (186)
T cd02863         178 VFTVVYLLG  186 (186)
T ss_pred             HHHHHHhcC
Confidence            999999875

Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex.

>PRK10663 cytochrome o ubiquinol oxidase subunit III; Provisional

Probab=100.00  E-value=7.2e-47  Score=293.93  Aligned_cols=171  Identities=50%  Similarity=0.922  Sum_probs=162.0

Q ss_pred             ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV   80 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl   80 (172)
                      +||+++|++++++|.++|..++++|++.+.++++.+.+||++|++||+++++|+++.|++++++.+.+|..|+++|.+|+
T Consensus        34 ~sE~~~F~~lf~ay~~~~~~~~~~p~~~~~~~lp~~~~nT~iLl~SS~~~~~A~~a~~~~~~~~~~~~L~~t~~LG~~Fl  113 (204)
T PRK10663         34 MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTFLFGAGFI  113 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999886676777766677788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389          81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG  160 (172)
Q Consensus        81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~  160 (172)
                      ++|..||.++.++|+++++|+|+|.||++||+|++||++|++++.++..|..+++++++++.++|++++||||||++|++
T Consensus       114 ~~Q~~Ey~~l~~~g~~~~~~~~~S~fy~lTGlHglHVi~Gli~L~~~~~~~~~~~~~~~~~~~~~~~a~YWHFVD~vWl~  193 (204)
T PRK10663        114 GMEIYEFHHLIVEGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQVARRGLTSTNRTRIMCLSLFWHFLDVVWIC  193 (204)
T ss_pred             HHHHHHHHHHHhcCcCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccC
Q psy2389         161 IFTFIYLIGTL  171 (172)
Q Consensus       161 ~~~~~yl~~~~  171 (172)
                      +|+++|++|.+
T Consensus       194 lf~~lYl~~~~  204 (204)
T PRK10663        194 VFTVVYLMGAM  204 (204)
T ss_pred             HHHHHHHHhcC
Confidence            99999998853

>TIGR02897 QoxC cytochrome aa3 quinol oxidase, subunit III

Probab=100.00  E-value=1.5e-46  Score=289.55  Aligned_cols=171  Identities=40%  Similarity=0.779  Sum_probs=159.7

Q ss_pred             ChHHHHHHHHHHHHHHHhccCC-CCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYA-EGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFF   79 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~-~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~F   79 (172)
                      +||+++|++++++|+++|...+ +++++.++++++.+.+||.+|++||.+++.|+++.|++++++.+.++..|+++|.+|
T Consensus        19 ~sE~~~F~~lf~ay~~~~~~~~~~~~~~~~~~~l~~~~lnT~vLl~SS~~~~~A~~a~~~~~~~~~~~~L~~tl~lG~~F   98 (190)
T TIGR02897        19 GAEIALFATLFATYLVLQHGGDYAGKMPAELFELPLVLIMTFLLLFSSFTCGIAIYEMRKENQKLMMFWMIITLLLGAGF   98 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999998643 344444567778888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHH
Q psy2389          80 VILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWI  159 (172)
Q Consensus        80 l~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl  159 (172)
                      +..|..||.++.++|+++++|+|+|+||++||+|++||++|++++.++..|.++++.+++++.++|.+++||||||++|+
T Consensus        99 l~~q~~E~~~l~~~g~~~~~~~~~s~fy~lTG~H~lHV~~Gli~l~~~~~~~~~~~~~~~~~~~~e~~~~YWHFvDivWi  178 (190)
T TIGR02897        99 VGFEIYEFAHYASEGVTPQIGSYWSSFFVLLGTHGCHVTLGIVWAICLLIQIQRRGLTPYTAPKVFIVSLYWHFLDVVWV  178 (190)
T ss_pred             HHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccC
Q psy2389         160 GIFTFIYLIGTL  171 (172)
Q Consensus       160 ~~~~~~yl~~~~  171 (172)
                      ++|+++|++|.+
T Consensus       179 ~lf~~lYl~~~~  190 (190)
T TIGR02897       179 FIFTAVYLIGMV  190 (190)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999853

This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.

>cd02862 NorE_like NorE_like subfamily of heme-copper oxidase subunit III

Probab=100.00  E-value=4.7e-46  Score=286.00  Aligned_cols=168  Identities=28%  Similarity=0.550  Sum_probs=159.8

Q ss_pred             ChHHHHHHHHHHHHHHHhccCCC-CCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYAE-GPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFF   79 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~~-~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~F   79 (172)
                      +||+++|++++++|+++|..+|+ ||++.++++++.+.+||.+|++||.++..|+++.|++++++.+.++..|+++|.+|
T Consensus        18 ~se~~~F~~l~~~y~~~~~~~~~~~p~~~~~~~~~~~~lnT~iLl~Ss~~~~~a~~a~~~~~~~~~~~~L~~t~~lg~~F   97 (186)
T cd02862          18 LSELLAFGALFIAYAVYRALYPELFAAGSAHLDLLLGALNTLVLLTSSFTVALAVRAARAGRRRRARRWLAAAVLLGLVF   97 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcCCCCCccCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999988776 56666667778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHH
Q psy2389          80 VILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWI  159 (172)
Q Consensus        80 l~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl  159 (172)
                      +++|.+||.++.++|++|++|+|+|+||++||+|++||++|++++.++..|..+++++++++.++|++++||||||++|+
T Consensus        98 l~~q~~E~~~l~~~g~~~~~~~~~s~f~~ltglH~~HV~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~YWHFvd~vWl  177 (186)
T cd02862          98 LVIKYFEYAHKIAAGIDPDAGLFFTLYFLLTGFHLLHVLIGLGILLWVAWRARRGRYSARDYEGVEAAALYWHMVDLVWI  177 (186)
T ss_pred             HHHHHHHHHHHHhCCCCcCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy2389         160 GIFTFIYLI  168 (172)
Q Consensus       160 ~~~~~~yl~  168 (172)
                      ++|.++|+.
T Consensus       178 ~lf~~lYl~  186 (186)
T cd02862         178 VLFPLLYLV  186 (186)
T ss_pred             HHHHHHHHC
Confidence            999999974

Heme-copper oxidases include cytochrome c and ubiquinol oxidases. Alcaligenes faecalis norE is found in a gene cluster containing norCB. norCB encodes the cytochrome c and cytochrome b subunits of nitric oxide reductase (NOR). Based on this and on its similarity to subunit III of cytochrome c oxidase (CcO) and ubiquinol oxidase, NorE has been speculated to be a subunit of NOR.

>cd02865 Heme_Cu_Oxidase_III_2 Heme-copper oxidase subunit III subfamily

Probab=100.00  E-value=1.4e-45  Score=282.99  Aligned_cols=167  Identities=22%  Similarity=0.350  Sum_probs=158.5

Q ss_pred             ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV   80 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl   80 (172)
                      +||+++|++++++|+++|.++|++| +.+.++++.+.+||++|++||.++..|+++.|++++++.+.++..|+++|++|+
T Consensus        18 ~se~~~F~~l~~~y~~~~~~~~~~p-~~~~~~~~~~~~nT~lLl~Ss~~~~~A~~a~~~~~~~~~~~~L~~t~~Lg~~F~   96 (184)
T cd02865          18 AVEGTLFALLISAYFMRMTSGDWQP-GAPLPLPNLLSLNTAVLAASSVAMQWARRAARRNRRVLARLGLALAGALALAFL   96 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCC-CccccCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999998777666 555667778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389          81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG  160 (172)
Q Consensus        81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~  160 (172)
                      +.|..||.++..+|.+|++|+|+|+||++||+|++||++|++++.+++.|..+++++++++.++|++++||||||++|++
T Consensus        97 ~~q~~E~~~~~~~g~~~~~~~~~s~f~~ltg~H~lHV~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~yWHFvd~vWl~  176 (184)
T cd02865          97 AGQLLAWHALNDAGYGPTSNPAGSFFYLLTGLHGLHVIGGLVALAIVLAGLIRGHYGPRRRLPVELCALYWHFLLLVWLV  176 (184)
T ss_pred             HHHHHHHHHHHhcCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q psy2389         161 IFTFIYLI  168 (172)
Q Consensus       161 ~~~~~yl~  168 (172)
                      +|+++|++
T Consensus       177 lf~~vYl~  184 (184)
T cd02865         177 LLALLYGT  184 (184)
T ss_pred             HHHHHHHC
Confidence            99999974

Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in

>PLN02194 cytochrome-c oxidase

Probab=100.00  E-value=2.9e-44  Score=288.26  Aligned_cols=168  Identities=25%  Similarity=0.384  Sum_probs=154.8

Q ss_pred             ChHHHHHHHHHHHHHHHhcc---CC--CCCc-ccccCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHN---YA--EGPT-AIQIFKLP-SVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~---~~--~~~~-~~~~~~~~-~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++.+..   ++  .||| +.+++|++ .+.+||++|++||.++++|++++|++++++.+.++..|+
T Consensus        91 ~SE~~~F~~~F~ay~~~~~~~~~~~g~~Wpp~g~~~~~~~~~~llNT~iLlsSs~tv~~A~~a~~~~~~~~~~~~L~~Ti  170 (265)
T PLN02194         91 VSEVMFFFAFFWASSHSSLAPAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVATV  170 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCcCccccccccCchhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            48999999999999997742   22  3654 55667764 588999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|++|+.+|..||.+   .|+++++|.|+|.||++||+|++||++|++++.++..|..+++++++++.++|.+++||||
T Consensus       171 ~LG~~Fl~lQ~~Ey~~---~~f~~~~~~fgS~Fy~lTGfHglHVi~G~i~L~v~~~r~~~~~~~~~~~~~~e~~a~YWHF  247 (265)
T PLN02194        171 LLALVFTGFQGMEYYQ---APFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHF  247 (265)
T ss_pred             HHHHHHHHHHHHHHHH---cCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHH
Confidence            9999999999999998   5999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccC
Q psy2389         154 LDIIWIGIFTFIYLIGTL  171 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~~  171 (172)
                      ||++|+++|+++|++|.+
T Consensus       248 VDvVWl~Lf~~vY~~~~~  265 (265)
T PLN02194        248 VDVVWLFLFVSIYWWGGI  265 (265)
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            999999999999999863

>cd01665 Cyt_c_Oxidase_III Cytochrome c oxidase subunit III

Probab=100.00  E-value=5.3e-44  Score=284.38  Aligned_cols=165  Identities=30%  Similarity=0.500  Sum_probs=153.4

Q ss_pred             ChHHHHHHHHHHHHHHHhccC-----CCCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNY-----AEGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~-----~~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      .||+++|++++++|++.+...     .+||| +.+++|+ ..|.+||++|++||.++++|++++|++++++.+.++..|+
T Consensus        72 ~SE~~~F~~~f~ayf~~~~~p~~~~g~~Wpp~gi~~~~~~~lp~lnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti  151 (243)
T cd01665          72 LSEVMFFFSFFWAFFHSSLSPSVELGGTWPPVGIEPLNPFGIPLLNTIILLSSGATVTWAHHALLLGNRKKAILGLILTI  151 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccCCCCCcCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            489999999999999988642     24665 4455665 6789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|.+|+..|..||.+   .+++++||+|+|.||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus       152 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~Fy~lTGfHglHVi~G~i~L~v~~~r~~~~~~~~~~~~~~e~~~~YWHF  228 (243)
T cd01665         152 LLGVYFTGLQAYEYYE---ASFTISDSVYGSTFFMLTGFHGLHVIIGTIFLTVCLIRLLKGHFSSNHHLGFEAAIWYWHF  228 (243)
T ss_pred             HHHHHHHHHHHHHHHH---CCcCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence            9999999999999998   6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy2389         154 LDIIWIGIFTFIYLI  168 (172)
Q Consensus       154 vd~vWl~~~~~~yl~  168 (172)
                      ||++|+++|.++|++
T Consensus       229 VDvVWl~lf~~vY~~  243 (243)
T cd01665         229 VDVVWLFLFVFVYWW  243 (243)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999999985

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool."

>MTH00189 COX3 cytochrome c oxidase subunit III; Provisional

Probab=100.00  E-value=7.1e-44  Score=285.77  Aligned_cols=167  Identities=26%  Similarity=0.465  Sum_probs=154.3

Q ss_pred             ChHHHHHHHHHHHHHHHhccC-C----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNY-A----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~-~----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++.+... +    .||| +.+++|+ ..+.+||++|++||.++++|++++|++++++.+.++..|+
T Consensus        87 ~SE~~fF~s~f~ayf~~~~~~~~~~g~~Wpp~g~~~~~~~~~pllnT~iLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~ti  166 (260)
T MTH00189         87 TSEVFFFLGFFWAFFHSSLAPTVELGMCWPPTGIEPLNPFEVPLLNTAVLLSSGVTVTWAHHSLMEGNRKEAIQALTLTV  166 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccCCccCCcCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            489999999999999987532 3    4764 5456665 4578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|.+|+..|.+||.+   .|+++++|.|+|.||++||+|++||++|++++.++..|..+++++++++.++|.+++||||
T Consensus       167 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~Fy~lTG~HglHVi~G~i~L~i~~~r~~~~~~~~~~~~~~e~~a~YWHF  243 (260)
T MTH00189        167 ILGVYFTLLQAMEYYE---APFTIADSVYGSTFFVATGFHGLHVIIGSTFLLVCLLRQIQGHFTSSHHFGFEAAAWYWHF  243 (260)
T ss_pred             HHHHHHHHHHHHHHHH---CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence            9999999999999998   6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      ||++|+++|.++|++|.
T Consensus       244 VDvVWl~lf~~vY~~~~  260 (260)
T MTH00189        244 VDVVWLFLYVSIYWWGS  260 (260)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999999873

>MTH00219 COX3 cytochrome c oxidase subunit III; Provisional

Probab=100.00  E-value=1.1e-43  Score=284.75  Aligned_cols=167  Identities=26%  Similarity=0.461  Sum_probs=154.4

Q ss_pred             ChHHHHHHHHHHHHHHHhccC-----CCCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNY-----AEGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~-----~~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++.+...     .+||| +.+.+|+ ..+.+||++|++||.++.+|+++++++++++.+.++..|+
T Consensus        89 ~SEv~~F~s~f~ayf~~~~~p~~~~g~~Wpp~gi~~~~~~~ipllnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti  168 (262)
T MTH00219         89 VSEILFFFAFFWAFFHSSLAPTIELGSCWPPTGINPLNPFQVPLLNTAVLLASGVTVTWAHHSLMESNHKEAQQGLLFTI  168 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCchhcCCCCCCCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            489999999999999988532     24654 4455666 4688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|+.|+.+|.+||.+   +|++++||.|+|+||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus       169 ~LG~~F~~~Q~~Ey~~---~~f~~~~~~ygS~Ff~lTGfHglHViiG~i~L~v~~~r~~~~~~~~~~~~~~e~~~~YWHF  245 (262)
T MTH00219        169 LLGLYFTMLQGMEYLE---ASFSISDSVYGTTFFVATGFHGLHVIIGTIFLFVCFMRGLMLHFSKNHHFGFEAAAWYWHF  245 (262)
T ss_pred             HHHHHHHHHHHHHHHH---CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence            9999999999999998   7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      ||++|+++|.++|++|.
T Consensus       246 VDvVWl~lf~~iY~~~~  262 (262)
T MTH00219        246 VDVVWLFLYVSIYWWGS  262 (262)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999999874

>MTH00024 COX3 cytochrome c oxidase subunit III; Validated

Probab=100.00  E-value=1.4e-43  Score=284.31  Aligned_cols=167  Identities=28%  Similarity=0.463  Sum_probs=153.5

Q ss_pred             ChHHHHHHHHHHHHHHHhccC-----CCCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNY-----AEGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~-----~~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++.+...     ..||| +.+++|+ ..|.+||++|++||.++++|++++++|++++.+.++..|+
T Consensus        88 ~SE~~~F~s~f~ayf~~~~~p~~~~g~~wpp~gi~~~~~~~~pllnT~iLL~Ss~~v~~a~~a~~~~~~~~~~~~L~~Ti  167 (261)
T MTH00024         88 LSEVLFFFSFFWAFFHSSLAPAVELGVVWPPQGINPLNPFSVPLLNTAVLLSSGATVTWAHHAIISGKRKEAILGLFLTV  167 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhcccCCCcCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            489999999999999977532     14654 4455665 4578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|.+|+..|..||.+   .|++++||.|+|.||++||+|++||++|++++.++..|..+++++++++.++|.+++||||
T Consensus       168 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~Ff~lTGfHglHVi~G~i~L~~~~~r~~~~~~~~~~~~~~e~~a~YWHF  244 (261)
T MTH00024        168 FLGVLFTGLQAIEYYE---APFAISDSVYGSTFFVATGFHGLHVIIGTTFLFVCLLRLLSNQFTRRQHVGFEAASWYWHF  244 (261)
T ss_pred             HHHHHHHHHHHHHHHH---cCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence            9999999999999998   6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      ||++|+++|.++|++|.
T Consensus       245 VDvVWl~lf~~iY~~~~  261 (261)
T MTH00024        245 VDVVWLFLYLCIYWWGS  261 (261)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999999873

>MTH00009 COX3 cytochrome c oxidase subunit III; Validated

Probab=100.00  E-value=1.7e-43  Score=283.39  Aligned_cols=167  Identities=27%  Similarity=0.457  Sum_probs=153.7

Q ss_pred             ChHHHHHHHHHHHHHHHhcc-CC----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHN-YA----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~-~~----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++.+.. +|    +||| +.+++++ ..|.+||++|++||.++++|++++|+|++++.+.++..|+
T Consensus        86 ~SE~~~F~~~f~ay~~~~~~~~~~~g~~Wpp~g~~~~~~~~~p~lnT~iLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~Ti  165 (259)
T MTH00009         86 ASEVMFFFAFFWAFFHSSLAPTPELGCSWPPTGIEPLNPFSVPLLNTAVLLASGVTVTWAHHSLIEGDRPEATQALILTV  165 (259)
T ss_pred             HHHHHHHHHHHHHHHHHHcccccccCCCCCCCCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            48999999999999998653 23    3654 4455665 4578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|++|+..|..||.+   +|++++||.|+|.||++||+|++||++|++++.++..|..+++++++++.++|.+++||||
T Consensus       166 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~Fy~lTG~HglHVivG~i~L~v~~~r~~~~~~~~~~~~~~e~~~~YWHF  242 (259)
T MTH00009        166 LLGAYFTFLQAGEYIE---APFTIADSVYGSTFFVATGFHGLHVLIGSSFLFVCLLRTWSHHFSTGHHFGFEAAAWYWHF  242 (259)
T ss_pred             HHHHHHHHHHHHHHHH---CCCCcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence            9999999999999998   7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      ||++|+++|.++|++|.
T Consensus       243 VDvVWl~lf~~iY~~~~  259 (259)
T MTH00009        243 VDVVWIFLYLCIYWWGS  259 (259)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999999873

>MTH00052 COX3 cytochrome c oxidase subunit III; Provisional

Probab=100.00  E-value=2.1e-43  Score=283.62  Aligned_cols=167  Identities=26%  Similarity=0.441  Sum_probs=153.8

Q ss_pred             ChHHHHHHHHHHHHHHHhccC-----CCCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNY-----AEGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~-----~~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++.+...     ..||| +.+++|+ ..+.+||++|++||.++.+|++++++|++++.+.+|..|+
T Consensus        89 ~SE~~~F~s~f~ay~~~~~~p~~~~g~~wpp~g~~~~~~~~~pllnT~iLl~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti  168 (262)
T MTH00052         89 VSEVCLFFSFFWAFFHSSLAPTIEIGAVWPPRGVDPLNPFSVPLLNTAVLLSSGATVTWAHHGIISGKRKEAIIGLALTV  168 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccCCCCccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            489999999999999987532     23654 4455665 4578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|+.|+..|..||.+   .|+++++|+|+|.||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus       169 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~ff~lTG~HglHVi~G~i~L~~~~~r~~~~~~~~~~~~~~e~~a~YWHF  245 (262)
T MTH00052        169 ALGLLFTGLQAMEYYE---APFTISDSVYGSTFFVTTGAHGGHVLIGSSFLLVCLFRLINHQFTRHHHFGFEAAAWYWHF  245 (262)
T ss_pred             HHHHHHHHHHHHHHHH---cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Confidence            9999999999999998   6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      ||++|+++|.++|++|.
T Consensus       246 VDvVWl~lf~~iY~~g~  262 (262)
T MTH00052        246 VDVVWLFLFIFMYWWGS  262 (262)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999999873

>MTH00039 COX3 cytochrome c oxidase subunit III; Validated

Probab=100.00  E-value=2e-43  Score=282.98  Aligned_cols=167  Identities=25%  Similarity=0.438  Sum_probs=154.1

Q ss_pred             ChHHHHHHHHHHHHHHHhccC-C----CCCc-ccccCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNY-A----EGPT-AIQIFKLP-SVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~-~----~~~~-~~~~~~~~-~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++.+... +    .||| +.+.+|+. .+.+||++|++||.++++|++++|++++++.+.+|..|+
T Consensus        87 ~SE~~~F~s~F~a~~~~~~~~~~~~g~~wpp~gi~~~~~~~~pllnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti  166 (260)
T MTH00039         87 TSEVCFFFAFFWAFFHSSLAPTVEIGVSWPPTGINPINPFLVPLLNTAVLLSSGVTITWSHHSILEGNRTEAIQALFLTV  166 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccCccCCCcccCchhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            489999999999999987642 2    3654 44556664 578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|.+|+..|.+||.+   .|++++||+|+|.||++||+|++||++|++++.++..|..+++++++++.++|.+++||||
T Consensus       167 ~LG~~Fl~~Q~~Ey~~---~~f~~~d~~ygS~Ff~lTGfHglHVi~G~i~L~v~~~r~~~~~~~~~~~~~~e~~a~YWHF  243 (260)
T MTH00039        167 LLGLYFTALQAWEYYD---APFTIADSVYGSTFFVATGFHGLHVIIGTTFLAVCLFRLINHHFSNNHHFGFEAAAWYWHF  243 (260)
T ss_pred             HHHHHHHHHHHHHHHH---CCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence            9999999999999998   6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      ||++|+++|.++|++|.
T Consensus       244 VDvVWlflf~~iY~~~~  260 (260)
T MTH00039        244 VDVVWLFLYVCIYWWGS  260 (260)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999999874

>MTH00130 COX3 cytochrome c oxidase subunit III; Provisional

Probab=100.00  E-value=2.2e-43  Score=282.93  Aligned_cols=167  Identities=29%  Similarity=0.511  Sum_probs=153.7

Q ss_pred             ChHHHHHHHHHHHHHHHhcc-CCC----CCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHN-YAE----GPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~-~~~----~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++.+.. +|+    ||| +.+++|+ ..+.+||++|++||.++++|++++|++++++.+.+|..|+
T Consensus        88 ~SE~~~F~s~F~ay~~~~~~~~~~~g~~wpp~g~~~~~~~~~pllnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~L~~Ti  167 (261)
T MTH00130         88 TSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGITTLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKQAIQSLTLTI  167 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccCCCCCCCccccCchhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            48999999999999998743 333    654 4455665 4578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|.+|+..|..||.+   .++++++|.|+|.||++||+|++||++|++++.++..|..+++++++++.++|.+++||||
T Consensus       168 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~~gS~fy~lTG~Hg~HVi~G~i~L~~~~~r~~~~~~~~~~~~~~e~~~~YWHF  244 (261)
T MTH00130        168 LLGFYFTFLQAMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHF  244 (261)
T ss_pred             HHHHHHHHHHHHHHHH---CCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence            9999999999999998   5899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      ||++|+++|+++|++|.
T Consensus       245 VDvVWlflf~~~Y~~g~  261 (261)
T MTH00130        245 VDVVWLFLYISIYWWGS  261 (261)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999999873

>PF00510 COX3: Cytochrome c oxidase subunit III This family corresponds to chains c and p

Probab=100.00  E-value=3e-43  Score=282.76  Aligned_cols=167  Identities=30%  Similarity=0.599  Sum_probs=148.1

Q ss_pred             ChHHHHHHHHHHHHHHHhccC-----CCCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNY-----AEGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~-----~~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++.+...     .+||| +.+++++ ..+.+||++|++||.++.+|+++.|+||+++.+.++..|+
T Consensus        85 ~SE~~~F~s~f~a~f~~~~~~~~~~g~~wpP~gi~~~~~~~lp~lnT~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~  164 (258)
T PF00510_consen   85 LSEVMFFASFFWAYFHSSLSPSIELGMQWPPVGIEPLNPLGLPLLNTILLLSSSVTVTWAHHALKRGNRKAARLWLLLTI  164 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHS-TTTTTSSSS-TT---TTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcccccchhhhcccccccchhccchHHHHhHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence            489999999999999876432     34765 4445554 4688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|.+|+..|.+||.+   ++++++||.|+|+||++||+|++||++|++++.++..|..+++.+++++.++|.+++||||
T Consensus       165 ~LG~~Fl~~Q~~Ey~~---~~~~~~~~~~gS~fy~lTG~Hg~HV~~G~~~L~~~~~r~~~~~~~~~~~~~~e~~~~YWHF  241 (258)
T PF00510_consen  165 LLGLLFLVLQVYEYSH---AGFTISDSVYGSFFYLLTGFHGLHVIIGLIFLIIVLFRMLRGHFSPERHLGFEAAAWYWHF  241 (258)
T ss_dssp             HHHHHHHHHHHHHHHH---CSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--BTTB-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh---hhhccccccccchhhhhhHHHHHHhhcchHHHHHHHHHHhhccCCchhhhhHHHHHHHHHH
Confidence            9999999999999987   7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      ||++|+++|.++|++|.
T Consensus       242 VDvvWl~lf~~~Y~~gs  258 (258)
T PF00510_consen  242 VDVVWLFLFPLLYLWGS  258 (258)
T ss_dssp             HHHHHHHHHHHHTTCT-
T ss_pred             HHHHHHHHHHHHheecC
Confidence            99999999999999984

; InterPro: IPR000298 Cytochrome c oxidase (1.9.3.1 from EC) is the terminal enzyme of the respiratory chain of mitochondria and many aerobic bacteria. It catalyses the transfer of electrons from reduced cytochrome c to molecular oxygen: 4 cytochrome c+2 + 4 H+ + O2 --> 4 cytochrome c+3 + 2 H2O This reaction is coupled to the pumping of four additional protons across the mitochondrial or bacterial membrane [, ]. Cytochrome c oxidase is an oligomeric enzymatic complex that is located in the mitochondrial inner membrane of eukaryotes and in the plasma membrane of aerobic prokaryotes. The core structure of prokaryotic and eukaryotic cytochrome c oxidase contains three common subunits, I, II and III. In prokaryotes, subunits I and III can be fused and a fourth subunit is sometimes found, whereas in eukaryotes there are a variable number of additional small polypeptidic subunits []. The functional role of subunit III is not yet understood. As the bacterial respiratory systems are branched, they have a number of distinct terminal oxidases, rather than the single cytochrome c oxidase present in the eukaryotic mitochondrial systems. Although the cytochrome o oxidases do not catalyse the cytochrome c but the quinol (ubiquinol) oxidation they belong to the same haem-copper oxidase superfamily as cytochrome c oxidases. Members of this family share sequence similarities in all three core subunits: subunit I is the most conserved subunit, whereas subunit II is the least conserved [, , ].; GO: 0004129 cytochrome-c oxidase activity, 0006123 mitochondrial electron transport, cytochrome c to oxygen, 0016020 membrane; PDB: 1M57_I 1M56_I 2EIL_P 2OCC_C 2EIM_C 2EIK_P 1OCZ_C 2EIJ_C 3AG2_P 1OCC_P ....

>MTH00075 COX3 cytochrome c oxidase subunit III; Provisional

Probab=100.00  E-value=4.7e-43  Score=281.17  Aligned_cols=166  Identities=26%  Similarity=0.490  Sum_probs=152.9

Q ss_pred             ChHHHHHHHHHHHHHHHhccC-C----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNY-A----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~-~----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++.+..+ +    +||| +.+.+|+ ..|.+||++|++||+++++|++++|+|++++.+.++..|+
T Consensus        88 ~SE~~~F~s~F~af~~~~~~~~~~~g~~Wpp~g~~~~~~~~~pllnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti  167 (261)
T MTH00075         88 TSEVFFFLGFFWAFYNSSLAPTPELGECWPPTGITPLDPFEVPLLNTAVLLASGVTVTWAHHSIMQGNRKEAIQSLALTI  167 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHcccccccCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            489999999999999887432 2    4654 4455665 4578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|..|+.+|..||.+   .++++++|.|+|.||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus       168 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~ff~lTG~HglHViiG~i~L~v~~~r~~~~~~~~~~~~~~e~~~~YWHF  244 (261)
T MTH00075        168 ILGLYFTLLQAMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIGSLFLLVCLLRQINFHFTSQHHFGFEAAAWYWHF  244 (261)
T ss_pred             HHHHHHHHHHHHHHHH---CCCCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence            9999999999999998   5899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy2389         154 LDIIWIGIFTFIYLIG  169 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~  169 (172)
                      ||++|+++|.++|++|
T Consensus       245 VDvVWl~lf~~vY~~~  260 (261)
T MTH00075        245 VDVVWLFLYVSIYWWG  260 (261)
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999999987

>MTH00141 COX3 cytochrome c oxidase subunit III; Provisional

Probab=100.00  E-value=5.1e-43  Score=281.28  Aligned_cols=167  Identities=26%  Similarity=0.479  Sum_probs=153.7

Q ss_pred             ChHHHHHHHHHHHHHHHhccC-----CCCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNY-----AEGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~-----~~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|+++|...     ..||| +.+.+++ ..+.+||++|++||.++.+|++++|++++++.+..+..|+
T Consensus        86 ~SE~~~F~slf~ayf~~~~~p~~~~~~~wpp~g~~~~~~~~~pllnT~iLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~ti  165 (259)
T MTH00141         86 VSEVCFFFAFFWAYFHSSLAPSVEIGCCWPPVGIEPLNPFQVPLLNTAVLLASGVTVTWAHHSLMEGDYKSALQGLGLTI  165 (259)
T ss_pred             HHHHHHHHHHHHHHHHHHHccccccCCCCCCccccccCchhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            489999999999999998632     23654 3445665 4578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|.+|++.|..||.+   .|+++++|+|+|.||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus       166 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~ff~lTG~HglHVi~G~i~l~~~~~r~~~~~~~~~~~~~~e~~a~YWHF  242 (259)
T MTH00141        166 ILGVYFTFLQAGEYYE---ASFSIADGVYGSTFFVLTGFHGLHVIIGTTFLLVCLVRLLLGHFSTNHHFGFEAAAWYWHF  242 (259)
T ss_pred             HHHHHHHHHHHHHHHH---CCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHHH
Confidence            9999999999999998   6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      ||++|+++|.++|++|.
T Consensus       243 VDvvWl~lf~~~Y~~~~  259 (259)
T MTH00141        243 VDVVWLFLYLSIYWWGS  259 (259)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999999873

>MTH00099 COX3 cytochrome c oxidase subunit III; Validated

Probab=100.00  E-value=6.5e-43  Score=280.49  Aligned_cols=167  Identities=28%  Similarity=0.494  Sum_probs=152.9

Q ss_pred             ChHHHHHHHHHHHHHHHhcc-CC----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHN-YA----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~-~~----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++.+.. +|    .||| +.+.+|+ ..+.+||++|++||.++.+|+++.|++++++.+.++..|+
T Consensus        88 ~SE~~~F~s~f~af~~~~~~~~~~~g~~wpp~g~~~~~~~~~pllnT~lLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~Ti  167 (261)
T MTH00099         88 ISEVFFFAGFFWAFYHSSLAPTPELGGCWPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGNRKHMLQALFITI  167 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhccCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            48999999999999887633 23    4664 4445565 4578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|++|+..|..||.+   .++++++|.|+|.||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus       168 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~ygS~ff~lTG~Hg~HVi~G~i~L~~~~~r~~~~~~~~~~~~~~e~~~~YWHF  244 (261)
T MTH00099        168 LLGLYFTLLQASEYYE---APFTISDGIYGSTFFMATGFHGLHVIIGSTFLIVCFLRQLKFHFTSNHHFGFEAAAWYWHF  244 (261)
T ss_pred             HHHHHHHHhHHHHHHH---CCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence            9999999999999998   6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      ||++|+++|.++|++|.
T Consensus       245 VDvVWlflf~~vY~~g~  261 (261)
T MTH00099        245 VDVVWLFLYVSIYWWGS  261 (261)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999999873

>MTH00083 COX3 cytochrome c oxidase subunit III; Provisional

Probab=100.00  E-value=7.5e-43  Score=279.30  Aligned_cols=166  Identities=25%  Similarity=0.453  Sum_probs=150.8

Q ss_pred             ChHHHHHHHHHHHHHHHhccC-----CCCCc-ccccCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNY-----AEGPT-AIQIFKLP-SVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~-----~~~~~-~~~~~~~~-~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      .||+++|++++++|++.+...     .+||| +.+.+|+. .+.+||++|++||.++++|++++|+++ ++.+.++..|+
T Consensus        84 ~SE~~~F~~~f~ayf~~~~~~~~~~g~~wpp~gi~~~~~~~~pllnT~iLL~Ss~tvt~a~~a~~~~~-~~~~~~L~~Ti  162 (256)
T MTH00083         84 FSEFMFFFSIFWTFFDAALVPVHELGGVWSPIGIHLVNYLGVPLLNTIILLSSGVSVTWSHHSLCLSN-KSCTNSLLLTC  162 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhhcccCcccCccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence            489999999999999986542     34754 44556654 688999999999999999999997754 67889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|.+|+..|..||.+   .++++++|+|+|+||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus       163 ~LG~~F~~~Q~~Ey~~---~~f~~~~~~ygS~Fy~lTGfHglHVi~G~i~L~v~~~r~~~~~~~~~~~~~~e~~a~YWHF  239 (256)
T MTH00083        163 FLGLYFTSFQLMEYKE---ASFSISDSIYGSIFYLGTGFHGIHVLCGGLFLLFNLLRLLKSHFNYNHHLGLEFAILYWHF  239 (256)
T ss_pred             HHHHHHHHHHHHHHHH---CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence            9999999999999998   6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      ||++|+++|.++|++|+
T Consensus       240 VDvVWlflf~~vY~~g~  256 (256)
T MTH00083        240 VDVVWLFLFVFVYWWSY  256 (256)
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999999874

>MTH00118 COX3 cytochrome c oxidase subunit III; Provisional

Probab=100.00  E-value=8.2e-43  Score=279.78  Aligned_cols=167  Identities=28%  Similarity=0.510  Sum_probs=152.5

Q ss_pred             ChHHHHHHHHHHHHHHHhccC-C----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNY-A----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~-~----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++.+..+ +    +||| +.+++|+ ..+.+||++|++||.++++|+++.|+|++++.+.+|..|+
T Consensus        88 ~SE~~~F~s~F~aff~~~~~~~~~~g~~wpp~g~~~~~~~~lpllnT~iLL~Ss~tvt~a~~a~~~~~~~~~~~~L~~Ti  167 (261)
T MTH00118         88 TSEVFFFLGFFWAFYHSSLAPTPELGGQWPPTGIKPLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGNRKQAIQALTLTI  167 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhcCCCCCCCcccccCccccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            489999999999997755432 2    4764 4445565 4578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|.+|+.+|..||.+   .|+++++|+|+|+||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus       168 ~LG~~F~~~Q~~Ey~~---~~f~~~~~~ygS~fy~lTG~HglHVi~G~i~L~v~~~r~~~~~~~~~~~~~~e~~~~YWHF  244 (261)
T MTH00118        168 LLGLYFTALQAMEYYE---APFTISDSVYGSTFFVATGFHGLHVIIGSTFLIVCLLRLIKFHFTTNHHFGFEAAAWYWHF  244 (261)
T ss_pred             HHHHHHHHHHHHHHHH---cCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence            9999999999999998   6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      ||++|+++|.++|++|.
T Consensus       245 VDvVWlflf~~vY~~~~  261 (261)
T MTH00118        245 VDVVWLFLYISIYWWGS  261 (261)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999999873

>cd00386 Heme_Cu_Oxidase_III_like Heme-copper oxidase subunit III

Probab=100.00  E-value=1.4e-42  Score=265.96  Aligned_cols=165  Identities=28%  Similarity=0.580  Sum_probs=154.4

Q ss_pred             ChHHHHHHHHHHHHHHHhccCCCCC-cccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYAEGP-TAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFF   79 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~~~~-~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~F   79 (172)
                      ++|+++|++++++|+++|..+|++| ++.++++++.+.+||+++++||++++.+.++.|++++++.+.++..|+++|++|
T Consensus        18 ~se~~~F~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~tlll~~ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~F   97 (183)
T cd00386          18 LSEVMLFGSFFWAYFHSRLSPPVEFGAGLDPLDLPLLNTNTLLLSGSSVTWAHASLAARRGNRKKARLWLLLTILLGLAF   97 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999887754 444556778888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHH
Q psy2389          80 VILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWI  159 (172)
Q Consensus        80 l~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl  159 (172)
                      ++.|..||.+   .+.+|++|+|+|.||++||+|++||++|++++.++..|.++++.+++++.++|++++||||||++|+
T Consensus        98 l~~q~~E~~~---~~~~~~~~~~~s~f~~ltglH~~HV~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~YWHFvd~vWl  174 (183)
T cd00386          98 LGLQAYEYSH---LIFTISDSVFGSTFFLLTGFHGLHVIIGLIFLLVVLIRLRRGHFTPRHHLGLEAAALYWHFVDVVWL  174 (183)
T ss_pred             HHHHHHHHHH---CcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999998   4669999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy2389         160 GIFTFIYLI  168 (172)
Q Consensus       160 ~~~~~~yl~  168 (172)
                      ++|+++|++
T Consensus       175 ~lf~~lYl~  183 (183)
T cd00386         175 FLFPLVYLW  183 (183)
T ss_pred             HHHHHHHhC
Confidence            999999974

Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex

>MTH00155 COX3 cytochrome c oxidase subunit III; Provisional

Probab=100.00  E-value=1.3e-42  Score=277.98  Aligned_cols=163  Identities=27%  Similarity=0.472  Sum_probs=149.7

Q ss_pred             ChHHHHHHHHHHHHHHHhccCC-----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYA-----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~-----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++.+....     .||| +.+.+|+ ..|.+||.+|++||.++++|+++.++|++++.+.++..|+
T Consensus        86 ~SE~~~F~~~f~ayf~~~~~p~~~~g~~wpp~g~~~~~~~~~p~lnT~iLL~Ss~tv~~a~~a~~~~~~~~~~~~L~~t~  165 (255)
T MTH00155         86 VSEVFFFISFFWAFFHSSLSPNIELGMIWPPKGIIPFNPFQIPLLNTIILLSSGVTVTWAHHSLMENNYKQATQSLFFTI  165 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCCCCCCccccCCccchhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4899999999999999875321     3654 4455554 4578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|.+|+..|..||.+   .|+++++|.|+|.||++||+|++||++|++++.++..|..+++++++++.++|++++||||
T Consensus       166 ~LG~~Fl~~Q~~Ey~~---~~f~~~~~~~gS~Fy~lTG~Hg~HVi~G~i~L~~~~~r~~~~~~~~~~~~~~e~~~~YWHF  242 (255)
T MTH00155        166 ILGIYFTMLQAYEYYE---APFTIADSVYGSTFFMATGFHGLHVIIGTTFLLVCLIRHLNNHFSSNHHFGFEAAAWYWHF  242 (255)
T ss_pred             HHHHHHHHHHHHHHHH---CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence            9999999999999998   6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2389         154 LDIIWIGIFTFIY  166 (172)
Q Consensus       154 vd~vWl~~~~~~y  166 (172)
                      ||++|+++|.++|
T Consensus       243 VDvVWl~lf~~vY  255 (255)
T MTH00155        243 VDVVWLFLYISIY  255 (255)
T ss_pred             HHHHHHHHHHHHC
Confidence            9999999999987

>cd02864 Heme_Cu_Oxidase_III_1 Heme-copper oxidase subunit III subfamily

Probab=100.00  E-value=4.2e-42  Score=267.14  Aligned_cols=168  Identities=30%  Similarity=0.521  Sum_probs=148.9

Q ss_pred             ChHHHHHHHHHHHHHHHhccCCC-CCcccc-------cCCchH--HHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYAE-GPTAIQ-------IFKLPS--VALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLS   70 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~~-~~~~~~-------~~~~~~--~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~   70 (172)
                      .||+++|++++++|+++|.++|+ ||++.+       ..+++.  +.+||++|++||.+++.|.++.|++|+++.+.++.
T Consensus        18 ~sE~~~F~~lf~ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~A~~a~~~~~~~~~~~~L~   97 (202)
T cd02864          18 LSDAFIFSSFLIAYMTARISTTEPWPLPSDVFALRIGHFNIPLVLIAIMTFILITSSGTMAMAVNFGYRGNRKAAARLML   97 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCCCCCccccccccCCcccchHhhhhhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            48999999999999999987765 565422       223333  34899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cCcCc-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cchhh
Q psy2389          71 ITTLLGFFFVILELNEFIELIN-RNFGP-----WRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLIL-ENQRR  143 (172)
Q Consensus        71 ~t~~lg~~Fl~~q~~e~~~l~~-~g~~~-----~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~-~~~~~  143 (172)
                      .|+++|.+|++.|..||.++.. .|.+|     ++|.|+|+||++||+|++||++|++++.++..|..+|++++ +++.+
T Consensus        98 ~t~~LG~~Fl~~q~~E~~~~~~~~~~~~~~~~~~~~~f~s~f~~ltg~HglHV~~G~i~l~~~~~~~~~g~~~~~~~~~~  177 (202)
T cd02864          98 ATALLGATFVGMQAFEWTKLIVEEGVRPWGNPWGAAQFGASFFMITGFHGTHVTIGVIYLIIIARKVWRGKYQRIGRYEI  177 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhHH
Confidence            9999999999999999999875 45555     46999999999999999999999999999999999999985 56789


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHh
Q psy2389         144 IICLSMFWHFLDIIWIGIFTFIYLI  168 (172)
Q Consensus       144 ~~~~~~yWhfvd~vWl~~~~~~yl~  168 (172)
                      +|++++||||||++|+++|+++|++
T Consensus       178 ~~~~~~YWHfvd~vWl~lf~~lYl~  202 (202)
T cd02864         178 VEIAGLYWHFVDLVWVFIFAFFYLW  202 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999984

Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in

>MTH00028 COX3 cytochrome c oxidase subunit III; Provisional

Probab=100.00  E-value=1.2e-41  Score=275.39  Aligned_cols=167  Identities=27%  Similarity=0.497  Sum_probs=150.8

Q ss_pred             ChHHHHHHHHHHHHHHHhccC-----CCCC-cccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHH---------h-----
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNY-----AEGP-TAIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQ---------K-----   59 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~-----~~~~-~~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~---------~-----   59 (172)
                      +||+++|++++++|++.+...     ..|| .+.+.+|+ ..+.+||++|++||+++.+|+++++         +     
T Consensus        88 ~SEv~fF~~~F~af~~~~~~p~~~~g~~wpp~gi~~~~~~~~pllnT~iLl~Ss~tvt~a~~a~~~~~~~~~~~~~~~~~  167 (297)
T MTH00028         88 LSEVCLFFAFFWAFFHSSLAPSVELGSVWPPKGIEALDPFAVPLLNTTILLSSGATVTWAHHAIIGTGNPASLEKGTQGI  167 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccccCCcCccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhccccc
Confidence            489999999999999988732     1365 45567777 4688999999999999999999874         3     


Q ss_pred             ----------------------cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHH
Q psy2389          60 ----------------------KYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHI  117 (172)
Q Consensus        60 ----------------------~~~~~~~~~L~~t~~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv  117 (172)
                                            |++++.+.+|..|+++|++|+++|..||.+   .++++++|.|+|+||++||+|++||
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ti~LG~~Fl~lQ~~EY~~---~~ft~~dsvygS~Fy~lTGfHglHV  244 (297)
T MTH00028        168 EGPNPSNGAPPDPQKGPTFLLSDFRTNAVIGLLMTILLGIIFTGLQAFEYKE---ASFAISDSVYGSTFFMLTGTHGLHV  244 (297)
T ss_pred             ccccccccccccccccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCCCCcchHHHHHHHHHHHHHHHH
Confidence                                  346778889999999999999999999998   5899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHHHHHHHHHhcc
Q psy2389         118 IFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       118 ~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~~~~~~yl~~~  170 (172)
                      ++|++++.++..|..+++++++++.++|++++||||||++|+++|.++|++|.
T Consensus       245 iiG~i~L~v~l~r~~~g~~s~~~~~~~e~~a~YWHFVDvVWLfLf~~iY~~~~  297 (297)
T MTH00028        245 LVGTTFLIVCFIRLLSNQFTNSHHLGLEAAIWYWHFVDVVWLFLYVFVYWWGS  297 (297)
T ss_pred             HHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999873

>MTH00049 COX3 cytochrome c oxidase subunit III; Validated

Probab=100.00  E-value=1.3e-37  Score=243.46  Aligned_cols=153  Identities=27%  Similarity=0.435  Sum_probs=132.1

Q ss_pred             ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV   80 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl   80 (172)
                      .||+++|++++++|++.|..+|+.|+    .+...+.+||.+|++||.+++.|+++.|+   ++.+.++..|+++|..|+
T Consensus        62 ~SE~~~F~~lf~ay~~~~~~~~~~~~----~~~~lp~lnT~iLl~SS~tv~~a~~~~~~---~~~~~~L~~T~~LG~~Fl  134 (215)
T MTH00049         62 LSEVIIFGSLLVCCLWFDDWSYISLS----SSLEIPFVGCFLLLGSSITVTAYHHLLGW---KYCDLFLYLTILLGLLFV  134 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccc----chhhhHHHHHHHHHHHHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHH
Confidence            48999999999999999876554221    12345779999999999999999988753   456778999999999999


Q ss_pred             HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389          81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG  160 (172)
Q Consensus        81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~  160 (172)
                      +.|..||.+   .+.++++|+|+|.||++||+|++||++|++++..+..|..+    ++++.+.|.+++||||||++|++
T Consensus       135 ~lQ~~Ey~~---~~~~~~~~~f~S~ff~lTGlHglHVi~G~i~L~~~~~~~~~----~~~~~~~e~~~~YWHFVD~VWl~  207 (215)
T MTH00049        135 VLQVFEFEE---SGVNSLDSSYYASCFCTVGLHFSHVVLGVVGLSTLLLVGSS----SFGVYRSTVLTWYWHFVDYIWLL  207 (215)
T ss_pred             HHHHHHHHH---CCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHHHHHH
Confidence            999999998   58999999999999999999999999999999999887432    33456679999999999999999


Q ss_pred             HHHHHHH
Q psy2389         161 IFTFIYL  167 (172)
Q Consensus       161 ~~~~~yl  167 (172)
                      +|+++|+
T Consensus       208 lf~~vYl  214 (215)
T MTH00049        208 VYLIVYV  214 (215)
T ss_pred             HHHHHHh
Confidence            9999997

>KOG4664|consensus

Probab=100.00  E-value=2e-36  Score=232.81  Aligned_cols=167  Identities=26%  Similarity=0.421  Sum_probs=153.5

Q ss_pred             ChHHHHHHHHHHHHHHHhccC-C----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNY-A----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~-~----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      .+|.++|.+++++++...... +    .||| +.+.+++ ..|++||.+|+.|+.++.+|++++-++++++....+..++
T Consensus        88 ~se~~~f~~~f~~ff~s~l~pt~elg~~wpp~gi~~~~p~evPlLnt~ILLsSgvtvtwahhsli~~~~~~~~~~ll~t~  167 (261)
T KOG4664|consen   88 LSEVLFFFGIFWAFFHSSLAPTVELGGCWPPTGIEPVNPLEVPLLNTSILLSSGVTVTWAHHSLIEGNRKKATSSLLITV  167 (261)
T ss_pred             HHHHHHHHHHHHHHHhcccCCcccccCcCCCccccCCCCcCCcchhhHHHHhccchHHHHHHHHHhcchhhhhhhhHHHH
Confidence            479999999999999865432 2    2654 5566666 4689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++++.|...|..||.+   ++++++|+.|||.||+-||+|++||++|..++.++.+|.++++++++++.+.|.+++||||
T Consensus       168 ll~vyFt~~Q~~EY~e---apFTIsDgIyGStFfvaTGFHg~Hviig~~fL~ic~iRql~~Hft~~HH~GfEaAa~Ywhf  244 (261)
T KOG4664|consen  168 LLAVYFTGFQLIEYAE---APFTISDGIYGSTFFVATGFHGFHVIIGTLFLPICFIRQLNNHFTKNHHVGFEAAAWYWHF  244 (261)
T ss_pred             HHHHHHHHHHHHHHhc---CceEeecccceeeeeeehhhhhHHHHHHHHHHHHHHHHHHhhhcccccccchhhhheeeee
Confidence            9999999999999998   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      +|++|+++++.+|++|.
T Consensus       245 vdvvwlfl~v~~ywwg~  261 (261)
T KOG4664|consen  245 VDVVWLFLYVSIYWWGG  261 (261)
T ss_pred             cceeeEEeEEEEEeccC
Confidence            99999999999999873

>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices

Probab=98.55  E-value=1.5e-05  Score=58.04  Aligned_cols=128  Identities=8%  Similarity=0.096  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC--cCccHHHHHHHHHHHH
Q psy2389          35 SVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFG--PWRSAFLSSFFVLVGM  112 (172)
Q Consensus        35 ~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl~~q~~e~~~l~~~g~~--~~~~~~~s~~~~ltG~  112 (172)
                      .|.+|+.+-..|......+...+||||.+.-++.+..+..+..+|+..=..  .+.. .|.+  ...+..-..|+.+...
T Consensus         4 lp~l~a~~~~~s~~ll~~g~~~Ir~~~~~~Hr~~Ml~a~~ls~lFlv~Yl~--~~~~-~g~~~f~g~~~ir~~Y~~iL~~   80 (133)
T PF04238_consen    4 LPDLNAVLNAISAVLLLIGWYFIRRGRIKLHRKLMLTAFVLSALFLVSYLY--YHFL-GGSTPFGGPGWIRPVYLFILIS   80 (133)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHh-cCCcccCCCccHHHHHHHHHHH
Confidence            356777777788888888999999999999999999999999999886443  3322 2332  1223334488999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHHHHHHHH
Q psy2389         113 HGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIY  166 (172)
Q Consensus       113 H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~~~~~~y  166 (172)
                      |.+-..+.+.+..+.+.+..+++.++.|+.. +...--|=++.+..+++|..+|
T Consensus        81 Hi~LA~~~~pL~l~tl~~a~~~~~~~Hrki~-r~t~piWlyvsvTGvvVYlmLy  133 (133)
T PF04238_consen   81 HIILAIVALPLVLYTLYRALRGRFTRHRKIG-RWTFPIWLYVSVTGVVVYLMLY  133 (133)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChHHHHHHH-HHHHHHHHHHHHHHHHHHHhhC
Confidence            9999988999999999999998755444333 6678889999999999998775

>COG2322 Predicted membrane protein [Function unknown]

Probab=98.47  E-value=3.1e-05  Score=57.80  Aligned_cols=129  Identities=11%  Similarity=0.078  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC--cCccHHHHHHHHHHHH
Q psy2389          35 SVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFG--PWRSAFLSSFFVLVGM  112 (172)
Q Consensus        35 ~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl~~q~~e~~~l~~~g~~--~~~~~~~s~~~~ltG~  112 (172)
                      .+.+|++.-..|..+...+.+.+||||.++-++.+..+..+...|++.-..-  +.. .+-+  ...+.|-..||.+.-.
T Consensus        45 ~p~lnai~~~~s~~~llag~~~Ikrg~i~~Hk~aMltA~~l~l~FlvlYltr--~~l-~~~t~f~~~G~~k~~Y~~iL~~  121 (177)
T COG2322          45 LPMLNAIFNSLSFIFLLAGWRLIKRGNIEKHKRAMLTAFTLALVFLVLYLTR--HGL-GGETAFGGTGIYKGIYFFILIT  121 (177)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH--Hhc-cccccCCCCeeeehHHHHHHHH
Confidence            3668888777888888889999999999999999999999999999865442  211 1222  4457888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHHHHHHHHH
Q psy2389         113 HGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYL  167 (172)
Q Consensus       113 H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~~~~~~yl  167 (172)
                      |-.-..+++....+.+++..++..+..|+. .+-.+--|-++.+..+.+|..+|-
T Consensus       122 Hi~LA~i~vPLal~al~~a~~~~~~rHrki-~r~ta~~Wlyva~tGv~VYLmL~~  175 (177)
T COG2322         122 HIILAAINVPLALYALILAWKGLYERHRKI-GRWTAPLWLYVALTGVVVYLMLYV  175 (177)
T ss_pred             HHHHHHHhhhHHHHHHHHHhcchhhhhhee-eehhhHHHHHHHHHHHHHhheeec
Confidence            999999999999999998888774433332 266778899999999998887763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
1fft_C	204	The Structure Of Ubiquinol Oxidase From Escherichia		1e-34
2yev_A	791	Structure Of Caa3-Type Cytochrome Oxidase Length =		2e-06
1v54_C	261	Bovine Heart Cytochrome C Oxidase At The Fully Oxid		1e-04
1occ_C	261	Structure Of Bovine Heart Cytochrome C Oxidase At T		2e-04

>pdb|1FFT|C Chain C, The Structure Of Ubiquinol Oxidase From Escherichia Coli Length = 204

Iteration: 1
 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 99/171 (57%)
Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIIXXXXXXXCGFAIIQAQKK 60
           MSDC++FS LFA YAVL +  A GPT   IF+LP V + T +        G A I   K 
Sbjct: 34  MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKN 93
Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGXXXXXX 120
             + VI WL++T L G  F+ +E+ EF  LI    GP RS FLS+FF LVG HG      
Sbjct: 94  NKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSG 153
Query: 121 XXXXXXXXXQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
                    QI +  L   N+ RI+CLS+FWHFLD++WI +FT +YL+G +
Sbjct: 154 LIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM 204

>pdb|2YEV|A Chain A, Structure Of Caa3-Type Cytochrome Oxidase Length = 791

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 38  LNTIIXXXXXXXCGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGP 97
           LNT +         FA    ++   N   F L +T +LG  F +++  EF +  + +   
Sbjct: 662 LNTFLLVSSSFTVHFAHHDLRRGRFNPFRFGLLVTIILGVLFFLVQSWEFYQFYHHS--S 719
Query: 98  WRSA-FLSSFFVLVGMHGXXXXXXXXXXXXXXXQIKKYNLILENQRRIICLSMFWHFLDI 156
           W+   + ++FF +VG+HG               Q  +  + L N   +   SM+WH +D 
Sbjct: 720 WQENLWTAAFFTIVGLHGLHVVIGGFGLILAYLQALRGKITLHNHGTLEAASMYWHLVDA 779
Query: 157 IWIGIFTFIYL 167
           +W+ I T  Y+
Sbjct: 780 VWLVIVTIFYV 790

>pdb|1V54|C Chain C, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 261

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 53  AIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGM 112
           ++++  +K++   +F   IT  LG +F +L+ +E+ E     F      + S+FFV  G 
Sbjct: 150 SLMEGDRKHMLQALF---ITITLGVYFTLLQASEYYE---APFTISDGVYGSTFFVATGF 203
Query: 113 HGXXXXXXXXXXXXXXXQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
           HG               +  K++    +       + +WHF+D++W+ ++  IY  G+
Sbjct: 204 HGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 261

>pdb|1OCC|C Chain C, Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 261

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 53  AIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGM 112
           ++++  +K++   +F   IT  LG +F +L+ +E+ E     F      + S+FFV  G 
Sbjct: 150 SLMEGDRKHMLQALF---ITITLGVYFTLLQASEYYE---APFTISDGVYGSTFFVATGF 203
Query: 113 HGXXXXXXXXXXXXXXXQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
           HG               +  K++    +       + +WHF+D++W+ ++  IY  G+
Sbjct: 204 HGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAGAWYWHFVDVVWLFLYVSIYWWGS 261

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
1fft_C	204	Ubiquinol oxidase; electron transport, cytochrome	3e-65
2yev_A	791	Cytochrome C oxidase polypeptide I+III; electron t	4e-19
1v54_C	261	Cytochrome C oxidase polypeptide III; oxidoreducta	3e-12
1qle_C	273	Cytochrome C oxidase polypeptide III; oxidoreducta	9e-11
1m56_C	266	Cytochrome C oxidase; membrane protein, oxidoreduc	2e-10

>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.25.1.1 Length = 204

 Score =  197 bits (503), Expect = 3e-65
 Identities = 86/171 (50%), Positives = 116/171 (67%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDC++FS LFA YAVL +  A GPT   IF+LP V + T +LL SS++ G A I   K 
Sbjct: 34  MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKN 93

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
             + VI WL++T L G  F+ +E+ EF  LI    GP RS FLS+FF LVG HGLH+  G
Sbjct: 94  NKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSG 153

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGTL 171
           +IW+  L++QI +  L   N+ RI+CLS+FWHFLD++WI +FT +YL+G +
Sbjct: 154 LIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM 204

>2yev_A Cytochrome C oxidase polypeptide I+III; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus} Length = 791

 Score = 82.9 bits (205), Expect = 4e-19
 Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 2/167 (1%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           +S+  +F+ L A Y  L  + A  P   +   L    LNT +L+ SS +  FA    ++ 
Sbjct: 626 VSEVGLFAILIAGYLYLRLSGAATPPE-ERPALWLALLNTFLLVSSSFTVHFAHHDLRRG 684

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
             N   F L +T +LG  F +++  EF +    +     + + ++FF +VG+HGLH++ G
Sbjct: 685 RFNPFRFGLLVTIILGVLFFLVQSWEFYQFY-HHSSWQENLWTAAFFTIVGLHGLHVVIG 743

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYL 167
              LI   LQ  +  + L N   +   SM+WH +D +W+ I T  Y+
Sbjct: 744 GFGLILAYLQALRGKITLHNHGTLEAASMYWHLVDAVWLVIVTIFYV 790

>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ... Length = 261

 Score = 61.8 bits (151), Expect = 3e-12
 Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 9/132 (6%)

Query: 38  LNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRN 94
           LNT +LL S +S  +A   +++  +K    ++  L IT  LG +F +L+ +E+ E     
Sbjct: 132 LNTSVLLASGVSITWAHHSLMEGDRK---HMLQALFITITLGVYFTLLQASEYYE---AP 185

Query: 95  FGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFL 154
           F      + S+FFV  G HGLH+I G  +LI    +  K++    +       + +WHF+
Sbjct: 186 FTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFV 245

Query: 155 DIIWIGIFTFIY 166
           D++W+ ++  IY
Sbjct: 246 DVVWLFLYVSIY 257

>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1 Length = 273

 Score = 57.6 bits (140), Expect = 9e-11
 Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 8/132 (6%)

Query: 38  LNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRN 94
           +NT+ILLLS ++  +A    +    +     I  L +  +LG  F  L+  E+       
Sbjct: 143 INTLILLLSGVAVTWAHHAFVLEGDR--KTTINGLIVAVILGVCFTGLQAYEYSHA---A 197

Query: 95  FGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFL 154
           FG   + +  +F++  G HG H+I G I+L   ++++ K  +  +        + +WHF+
Sbjct: 198 FGLADTVYAGAFYMATGFHGAHVIIGTIFLFVCLIRLLKGQMTQKQHVGFEAAAWYWHFV 257

Query: 155 DIIWIGIFTFIY 166
           D++W+ +F  IY
Sbjct: 258 DVVWLFLFVVIY 269

>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C* Length = 266

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 34/132 (25%), Positives = 68/132 (51%), Gaps = 8/132 (6%)

Query: 38  LNTIILLLSSLSCGFA---IIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRN 94
           +NT+ILL S  +  +A   ++    +    V + L++   LG  F + +  E+       
Sbjct: 136 INTLILLCSGCAATWAHHALVHENNR--RDVAWGLALAIALGALFTVFQAYEYSHA---A 190

Query: 95  FGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFL 154
           FG   + + ++FF+  G HG H+I G I+L+  ++++++ +   E          +WHF+
Sbjct: 191 FGFAGNIYGANFFMATGFHGFHVIVGTIFLLVCLIRVQRGHFTPEKHVGFEAAIWYWHFV 250

Query: 155 DIIWIGIFTFIY 166
           D++W+ +F  IY
Sbjct: 251 DVVWLFLFASIY 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
1m56_C	266	Cytochrome C oxidase; membrane protein, oxidoreduc	100.0
1fft_C	204	Ubiquinol oxidase; electron transport, cytochrome	100.0
1v54_C	261	Cytochrome C oxidase polypeptide III; oxidoreducta	100.0
1qle_C	273	Cytochrome C oxidase polypeptide III; oxidoreducta	100.0
2yev_A	791	Cytochrome C oxidase polypeptide I+III; electron t	100.0

>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*

Probab=100.00  E-value=6.7e-46  Score=297.60  Aligned_cols=167  Identities=26%  Similarity=0.484  Sum_probs=155.9

Q ss_pred             ChHHHHHHHHHHHHHHHhcc---------CCCCCc-ccccCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-cChhhHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHN---------YAEGPT-AIQIFKLP-SVALNTIILLLSSLSCGFAIIQAQK-KYVNGVIFW   68 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~---------~~~~~~-~~~~~~~~-~~~~~T~lLl~Ss~~~~~a~~~~~~-~~~~~~~~~   68 (172)
                      +||+++|++++++|+++|..         .++||| +.+.+|+. .+.+||++|++||+++.+|++++++ ||+++.+.+
T Consensus        88 ~SE~~~F~s~f~ayf~~~~~~~~~~~~~~g~~Wpp~g~~~~~~~~lpllnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~~  167 (266)
T 1m56_C           88 MSEVMFFSAWFWSFFKHALYPMGPESPIIDGIFPPEGIITFDPWHLPLINTLILLCSGCAATWAHHALVHENNRRDVAWG  167 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCTBTTTBCCCSSCTTCCCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCcchhhhcccCCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            48999999999999999874         345765 45566664 7899999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHH
Q psy2389          69 LSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLS  148 (172)
Q Consensus        69 L~~t~~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~  148 (172)
                      |..|+++|+.|+.+|.+||.+   +|+++++|+|+|+||++||+|++||++|++++.+++.|..+++++++++.++|+++
T Consensus       168 L~~Ti~LG~~F~~lQ~~Ey~~---~~f~~~~~~ygS~ff~lTGfHglHViiG~i~l~v~~~r~~~~~~t~~~~~~~e~~a  244 (266)
T 1m56_C          168 LALAIALGALFTVFQAYEYSH---AAFGFAGNIYGANFFMATGFHGFHVIVGTIFLLVCLIRVQRGHFTPEKHVGFEAAI  244 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT---CSSCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHH
Confidence            999999999999999999997   79999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHhcc
Q psy2389         149 MFWHFLDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       149 ~yWhfvd~vWl~~~~~~yl~~~  170 (172)
                      +||||||++|+++|.++|++|.
T Consensus       245 ~YWHFVDvVWl~lf~~iY~~g~  266 (266)
T 1m56_C          245 WYWHFVDVVWLFLFASIYIWGQ  266 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999873

>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.25.1.1

Probab=100.00  E-value=2.4e-48  Score=301.39  Aligned_cols=171  Identities=50%  Similarity=0.921  Sum_probs=162.5

Q ss_pred             ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV   80 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl   80 (172)
                      +||+++|++++++|+++|...|++|++.+.++++.+.+||++|++||+++.+|++++++|++++.+.++..|+++|++|+
T Consensus        34 ~sE~~~F~~lf~ay~~~~~~~~~~p~~~~~~~~~~~~lnT~iLl~Ss~t~~~A~~a~~~~~~~~~~~~L~~t~~LG~~Fl  113 (204)
T 1fft_C           34 MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFI  113 (204)
T ss_dssp             HHHTTHHHHHHHHHTTTTTTCCCSCCCCCCTTHHHHHHHHHHHGGGTTTTTSGGGTTTTCCGGGGTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCCCchhhccccHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            38999999999999999988788887777788778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389          81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG  160 (172)
Q Consensus        81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~  160 (172)
                      ++|.+||.++.++|++|++|+|+|.||++||+|++||++|++++.+++.|..+++++++++.++|++++||||||++|++
T Consensus       114 ~~q~~Ey~~~~~~g~~~~~~~ygS~ff~ltG~HglHV~~G~i~l~~~~~r~~~~~~~~~~~~~~e~~a~YWHFVDvvWl~  193 (204)
T 1fft_C          114 GMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWIC  193 (204)
T ss_dssp             HHHHHHHHHHHHSSCSCCCCSTTTHHHHHHHHHTTHHHHTTHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999988889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccC
Q psy2389         161 IFTFIYLIGTL  171 (172)
Q Consensus       161 ~~~~~yl~~~~  171 (172)
                      +|+++|++|.+
T Consensus       194 lf~~vYl~g~~  204 (204)
T 1fft_C          194 VFTVVYLMGAM  204 (204)
T ss_dssp             HCCCCCCCCC-
T ss_pred             HHHHHHHHHhC
Confidence            99999998853

>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...

Probab=100.00  E-value=2.4e-45  Score=293.83  Aligned_cols=167  Identities=28%  Similarity=0.481  Sum_probs=155.3

Q ss_pred             ChHHHHHHHHHHHHHHHhcc-----CCCCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHN-----YAEGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~-----~~~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++++..     .++||| +.+.+|+ ..+.+||++|++||.++.+|++++++||+++.+.+|..|+
T Consensus        88 ~SE~~~F~~~f~ayf~~~~~p~~~~g~~Wpp~g~~~~~~~~~pllnT~iLL~Ss~t~~~A~~a~~~~~~~~~~~~L~~T~  167 (261)
T 1v54_C           88 ISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITI  167 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCGGGTSSSSCTTCCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCcchhccCcCCCcccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            48999999999999998864     246775 4445665 5689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|+.|+.+|.+||.+   +|++|++|+|+|+||++||+|++||++|++++.+++.|..+++++++++.++|++++||||
T Consensus       168 ~LG~~F~~~Q~~Ey~~---~~f~~~~~~ygS~ff~lTGfHglHV~iG~i~l~~~~~r~~~~~~~~~~~~~~e~~a~YWHF  244 (261)
T 1v54_C          168 TLGVYFTLLQASEYYE---APFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHF  244 (261)
T ss_dssp             HHHHHHHHHHHHHHHH---CSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---cCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHH
Confidence            9999999999999987   7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      ||++|+++|.++|++|.
T Consensus       245 VDvVWl~lf~~vY~~g~  261 (261)
T 1v54_C          245 VDVVWLFLYVSIYWWGS  261 (261)
T ss_dssp             HHHHHHHHHHHTTTTTC
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999999873

>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1

Probab=100.00  E-value=9.6e-46  Score=297.56  Aligned_cols=167  Identities=26%  Similarity=0.476  Sum_probs=155.8

Q ss_pred             ChHHHHHHHHHHHHHHHhcc---------CCCCCc-ccccCCch-HHHHHHHHHHHHHHHHHHHHHHH-HhcChhhHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHN---------YAEGPT-AIQIFKLP-SVALNTIILLLSSLSCGFAIIQA-QKKYVNGVIFW   68 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~---------~~~~~~-~~~~~~~~-~~~~~T~lLl~Ss~~~~~a~~~~-~~~~~~~~~~~   68 (172)
                      +||+++|++++++|+++|..         .++||| +.+.+|+. .+.+||++|++||+++.+|++++ ++|++++.+.+
T Consensus        95 ~SEv~~F~s~f~ayf~~~~~~~~~~~~~~g~~WpP~g~~~~~~~~lpllnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~~  174 (273)
T 1qle_C           95 MSEVMFFVAWFWAFIKNALYPMGPDSPIKDGVWPPEGIVTFDPWHLPLINTLILLLSGVAVTWAHHAFVLEGDRKTTING  174 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCTTTTTSCCCSSCTTCCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhhhccCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            48999999999999999874         345765 55667764 78999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHH
Q psy2389          69 LSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLS  148 (172)
Q Consensus        69 L~~t~~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~  148 (172)
                      |.+|+++|+.|+.+|.+||.+   +|+++++|+|+|+||++||+|++||++|++++.+++.|..+++++++++.++|+++
T Consensus       175 L~~Ti~LG~~F~~lQ~~Ey~~---~~f~~~~~~ygS~ff~lTGfHglHViiG~i~l~v~l~r~~~~~~t~~~~~~~e~~a  251 (273)
T 1qle_C          175 LIVAVILGVCFTGLQAYEYSH---AAFGLADTVYAGAFYMATGFHGAHVIIGTIFLFVCLIRLLKGQMTQKQHVGFEAAA  251 (273)
T ss_dssp             THHHHTHHHHHHHHHHHHGGG---CSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHH
Confidence            999999999999999999987   79999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHhcc
Q psy2389         149 MFWHFLDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       149 ~yWhfvd~vWl~~~~~~yl~~~  170 (172)
                      +||||||++|+++|.++|++|.
T Consensus       252 ~YWHFVDvVWl~lf~~vY~~g~  273 (273)
T 1qle_C          252 WYWHFVDVVWLFLFVVIYIWGR  273 (273)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999873

>2yev_A Cytochrome C oxidase polypeptide I+III; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}

Probab=100.00  E-value=1.7e-40  Score=298.90  Aligned_cols=166  Identities=30%  Similarity=0.480  Sum_probs=155.8

Q ss_pred             ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV   80 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl   80 (172)
                      +||+++|++++++|+++|...++||++.. +++..+.+||++|++||+++.+|++++++||+++.+.+|.+|+++|++|+
T Consensus       626 ~SE~~~F~~~f~ay~~~~~~~~~wpp~~i-~~~~~~llnT~iLL~Ss~t~~~A~~a~~~~~~~~~~~~L~~T~~LG~~F~  704 (791)
T 2yev_A          626 VSEVGLFAILIAGYLYLRLSGAATPPEER-PALWLALLNTFLLVSSSFTVHFAHHDLRRGRFNPFRFGLLVTIILGVLFF  704 (791)
Confidence            48999999999999999988888986443 34467889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389          81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG  160 (172)
Q Consensus        81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~  160 (172)
                      ++|.+||.++. +|+++++|+|+|+||++||+|++||++|++++.+++.|..+++++++++.++|++++||||||++|++
T Consensus       705 ~lQ~~Ey~~~~-~~~~~~~~~ygS~ff~lTGfHglHViiG~i~l~v~~~r~~~~~~t~~~~~~~e~~a~YWHFVDvVWl~  783 (791)
T 2yev_A          705 LVQSWEFYQFY-HHSSWQENLWTAAFFTIVGLHGLHVVIGGFGLILAYLQALRGKITLHNHGTLEAASMYWHLVDAVWLV  783 (791)
Confidence            99999999965 48999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q psy2389         161 IFTFIYLI  168 (172)
Q Consensus       161 ~~~~~yl~  168 (172)
                      +|.++|++
T Consensus       784 lf~~vYl~  791 (791)
T 2yev_A          784 IVTIFYVW  791 (791)
Confidence            99999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d1fftc_	185	f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subu	3e-28
d1v54c_	259	f.25.1.1 (C:) Mitochondrial cytochrome c oxidase,	2e-20
d1m56c_	265	f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxid	5e-17

>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]} Length = 185

class: Membrane and cell surface proteins and peptides
fold: Cytochrome c oxidase subunit III-like
superfamily: Cytochrome c oxidase subunit III-like
family: Cytochrome c oxidase subunit III-like
domain: Cytochrome O ubiquinol oxidase, subunit III
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (253), Expect = 3e-28
 Identities = 86/169 (50%), Positives = 115/169 (68%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKK 60
           MSDC++FS LFA YAVL +  A GPT   IF+LP V + T +LL SS++ G A I   K 
Sbjct: 16  MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKN 75

Query: 61  YVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFG 120
             + VI WL++T L G  F+ +E+ EF  LI    GP RS FLS+FF LVG HGLH+  G
Sbjct: 76  NKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSG 135

Query: 121 IIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
           +IW+  L++QI +  L   N+ RI+CLS+FWHFLD++WI +FT +YL+G
Sbjct: 136 LIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMG 184

>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]} Length = 259

class: Membrane and cell surface proteins and peptides
fold: Cytochrome c oxidase subunit III-like
superfamily: Cytochrome c oxidase subunit III-like
family: Cytochrome c oxidase subunit III-like
domain: Mitochondrial cytochrome c oxidase, subunit III
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.8 bits (204), Expect = 2e-20
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 5/167 (2%)

Query: 4   CLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVN 63
               SSL     + G     G   +   ++P   LNT +LL S +S  +A     +    
Sbjct: 98  AFYHSSLAPTPELGGCWPPTGIHPLNPLEVP--LLNTSVLLASGVSITWAHHSLMEGDRK 155

Query: 64  GVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIW 123
            ++  L IT  LG +F +L+ +E+ E     F      + S+FFV  G HGLH+I G  +
Sbjct: 156 HMLQALFITITLGVYFTLLQASEYYE---APFTISDGVYGSTFFVATGFHGLHVIIGSTF 212

Query: 124 LITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIGT 170
           LI    +  K++    +       + +WHF+D++W+ ++  IY  G+
Sbjct: 213 LIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS 259

>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]} Length = 265

class: Membrane and cell surface proteins and peptides
fold: Cytochrome c oxidase subunit III-like
superfamily: Cytochrome c oxidase subunit III-like
family: Cytochrome c oxidase subunit III-like
domain: Bacterial aa3 type cytochrome c oxidase subunit III
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 73.6 bits (180), Expect = 5e-17
 Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 13/180 (7%)

Query: 1   MSDCLIFSSLFAIYAVLGHNYAEGPTA-----------IQIFKLPSVALNTIILLLSSLS 49
           MS+ + FS+ F  +           +            I         +NT+ILL S  +
Sbjct: 87  MSEVMFFSAWFWSFFKHALYPMGPESPIIDGIFPPEGIITFDPWHLPLINTLILLCSGCA 146

Query: 50  CGFAIIQAQKKYVNGVIFWLSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVL 109
             +A      +     + W     +       +   +  E  +  FG   + + ++FF+ 
Sbjct: 147 ATWAHHALVHENNRRDVAWGLALAIALGALFTV--FQAYEYSHAAFGFAGNIYGANFFMA 204

Query: 110 VGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIGIFTFIYLIG 169
            G HG H+I G I+L+  ++++++ +   E          +WHF+D++W+ +F  IY+ G
Sbjct: 205 TGFHGFHVIVGTIFLLVCLIRVQRGHFTPEKHVGFEAAIWYWHFVDVVWLFLFASIYIWG 264

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1fftc_	185	Cytochrome O ubiquinol oxidase, subunit III {Esche	100.0
d1v54c_	259	Mitochondrial cytochrome c oxidase, subunit III {C	100.0
d1m56c_	265	Bacterial aa3 type cytochrome c oxidase subunit II	100.0

>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Cytochrome c oxidase subunit III-like
superfamily: Cytochrome c oxidase subunit III-like
family: Cytochrome c oxidase subunit III-like
domain: Cytochrome O ubiquinol oxidase, subunit III
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-47  Score=290.87  Aligned_cols=169  Identities=51%  Similarity=0.926  Sum_probs=161.6

Q ss_pred             ChHHHHHHHHHHHHHHHhccCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYAEGPTAIQIFKLPSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITTLLGFFFV   80 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~~~~~~~~~~~~~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~lg~~Fl   80 (172)
                      .||+++|++++++|++.|..+|++|++.+.++++.+.+||.+|++||.++..|+++.|+|++++.+.++..|+++|.+|+
T Consensus        16 ~se~~~F~~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~vLl~SS~~~~~a~~~~~~~~~~~~~~~L~~t~~lG~~Fl   95 (185)
T d1fftc_          16 MSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFI   95 (185)
T ss_dssp             HHHTTHHHHHHHHHTTTTTTCCCSCCCCCCTTHHHHHHHHHHHGGGTTTTTSGGGTTTTCCGGGGTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            38999999999999998887777777777778888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHHHHHHHHH
Q psy2389          81 ILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHFLDIIWIG  160 (172)
Q Consensus        81 ~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhfvd~vWl~  160 (172)
                      ..|..||.++.++|.+|++|+|+|.||++||+|++||++|++++.++..|..+++.+++++.++|.+++||||||++|++
T Consensus        96 ~~q~~e~~~l~~~g~~~~~~~~~s~fy~lTGlH~lHV~~Gli~L~~~~~r~~~~~~~~~~~~~v~~~~~YWHFvd~vWi~  175 (185)
T d1fftc_          96 GMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWIC  175 (185)
T ss_dssp             HHHHHHHHHHHHSSCSCCCCSTTTHHHHHHHHHTTHHHHTTHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy2389         161 IFTFIYLIG  169 (172)
Q Consensus       161 ~~~~~yl~~  169 (172)
                      +|+++|++|
T Consensus       176 lf~~lYl~g  184 (185)
T d1fftc_         176 VFTVVYLMG  184 (185)
T ss_dssp             HCCCCCCCC
T ss_pred             HHHHHHhcC
Confidence            999999987

>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Cytochrome c oxidase subunit III-like
superfamily: Cytochrome c oxidase subunit III-like
family: Cytochrome c oxidase subunit III-like
domain: Mitochondrial cytochrome c oxidase, subunit III
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-43  Score=281.65  Aligned_cols=167  Identities=28%  Similarity=0.483  Sum_probs=153.7

Q ss_pred             ChHHHHHHHHHHHHHHHhccCC-----CCCc-ccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNYA-----EGPT-AIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKYVNGVIFWLSITT   73 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~~-----~~~~-~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~   73 (172)
                      +||+++|++++++|++.|...+     .||| +.+..++ ..+.+||.+|++||.+++.|++++|+||+++.+.++..|+
T Consensus        86 ~SEv~~F~~~F~ay~~~~~~~~~~~g~~~pp~~i~~~~~~~lpllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~  165 (259)
T d1v54c_          86 ISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITI  165 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCGGGTSSSSCTTCCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccccCCcCCCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            4899999999999999886531     2443 4444444 5689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHhHHH
Q psy2389          74 LLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLSMFWHF  153 (172)
Q Consensus        74 ~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~~yWhf  153 (172)
                      ++|++|+..|..||.+   ++.++++|.|+|.||++||+|++||++|++++.++..|..+++++++++.++|.+++||||
T Consensus       166 ~lg~~Fl~~q~~Ey~~---~~~~~~~~~~gS~ff~lTG~Hg~HVi~G~i~l~~~~~r~~~~~~~~~~~~~~e~~~~YWHF  242 (259)
T d1v54c_         166 TLGVYFTLLQASEYYE---APFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHF  242 (259)
T ss_dssp             HHHHHHHHHHHHHHHH---CSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhc---cCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHhH
Confidence            9999999999999988   7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q psy2389         154 LDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       154 vd~vWl~~~~~~yl~~~  170 (172)
                      ||++|+++|+++|++|.
T Consensus       243 VDvVWi~lf~~vYl~G~  259 (259)
T d1v54c_         243 VDVVWLFLYVSIYWWGS  259 (259)
T ss_dssp             HHHHHHHHHHHTTTTTC
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999999984

>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}

class: Membrane and cell surface proteins and peptides
fold: Cytochrome c oxidase subunit III-like
superfamily: Cytochrome c oxidase subunit III-like
family: Cytochrome c oxidase subunit III-like
domain: Bacterial aa3 type cytochrome c oxidase subunit III
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=100.00  E-value=2.6e-42  Score=275.27  Aligned_cols=167  Identities=26%  Similarity=0.492  Sum_probs=148.4

Q ss_pred             ChHHHHHHHHHHHHHHHhccC---------CCCC-cccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhhHHHH
Q psy2389           1 MSDCLIFSSLFAIYAVLGHNY---------AEGP-TAIQIFKL-PSVALNTIILLLSSLSCGFAIIQAQKKY-VNGVIFW   68 (172)
Q Consensus         1 ~se~~~F~~l~~ay~~l~~~~---------~~~~-~~~~~~~~-~~~~~~T~lLl~Ss~~~~~a~~~~~~~~-~~~~~~~   68 (172)
                      +||+++|++++++|++.|...         ..|| ++.+..++ ..+.+||.+|++||.++..|+++.++++ ++..+..
T Consensus        87 ~SEvm~F~~~f~~yf~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~l~l~nT~iLl~Ss~~~~~a~~~~~~~~~~~~~~~~  166 (265)
T d1m56c_          87 MSEVMFFSAWFWSFFKHALYPMGPESPIIDGIFPPEGIITFDPWHLPLINTLILLCSGCAATWAHHALVHENNRRDVAWG  166 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCTBTTTBCCCSSCTTCCCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCCCCcCCCCCCCcccccchhhhHHHHHHHHHccHHHHHHHHHHHHhccchHHHHHH
Confidence            489999999999999987542         1233 33344444 4689999999999999999999987664 5556667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHH
Q psy2389          69 LSITTLLGFFFVILELNEFIELINRNFGPWRSAFLSSFFVLVGMHGLHIIFGIIWLITLILQIKKYNLILENQRRIICLS  148 (172)
Q Consensus        69 L~~t~~lg~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~~~~ltG~H~~Hv~iG~i~l~~~~~~~~~~~~~~~~~~~~~~~~  148 (172)
                      +..|+++|+.|+..|..||.+   ++.++++|.|+|+||++||+|++||++|++++.++..|..+++++++++.++|.++
T Consensus       167 L~~t~~lg~~F~~~q~~Ey~~---~~~~~~~~~~gs~ff~lTG~Hg~HV~~G~i~l~~~~~~~~~~~~~~~~~~~~e~~~  243 (265)
T d1m56c_         167 LALAIALGALFTVFQAYEYSH---AAFGFAGNIYGANFFMATGFHGFHVIVGTIFLLVCLIRVQRGHFTPEKHVGFEAAI  243 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT---CSSCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---cCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHH
Confidence            999999999999999999997   78999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHhcc
Q psy2389         149 MFWHFLDIIWIGIFTFIYLIGT  170 (172)
Q Consensus       149 ~yWhfvd~vWl~~~~~~yl~~~  170 (172)
                      +||||||++|+++|+++|++|+
T Consensus       244 ~YWHFVDvVWi~lf~~~Yl~G~  265 (265)
T d1m56c_         244 WYWHFVDVVWLFLFASIYIWGQ  265 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999985