Psyllid ID: psy2393
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 576 | 2.2.26 [Sep-21-2011] | |||||||
| A6SX05 | 700 | Methionine--tRNA ligase O | yes | N/A | 0.947 | 0.78 | 0.622 | 0.0 | |
| A4G3S6 | 710 | Methionine--tRNA ligase O | yes | N/A | 0.946 | 0.767 | 0.598 | 0.0 | |
| B1XWM2 | 689 | Methionine--tRNA ligase O | yes | N/A | 0.970 | 0.811 | 0.579 | 0.0 | |
| A2SEY3 | 697 | Methionine--tRNA ligase O | yes | N/A | 0.947 | 0.783 | 0.555 | 0.0 | |
| Q12F12 | 689 | Methionine--tRNA ligase O | yes | N/A | 0.942 | 0.788 | 0.565 | 0.0 | |
| A1TTU1 | 706 | Methionine--tRNA ligase O | yes | N/A | 0.947 | 0.773 | 0.546 | 0.0 | |
| Q21TB9 | 700 | Methionine--tRNA ligase O | yes | N/A | 0.963 | 0.792 | 0.550 | 0.0 | |
| B9MEX0 | 688 | Methionine--tRNA ligase O | yes | N/A | 0.949 | 0.795 | 0.556 | 0.0 | |
| A1WBH1 | 688 | Methionine--tRNA ligase O | yes | N/A | 0.949 | 0.795 | 0.556 | 0.0 | |
| A1VKF9 | 707 | Methionine--tRNA ligase O | yes | N/A | 0.949 | 0.773 | 0.546 | 0.0 |
| >sp|A6SX05|SYM_JANMA Methionine--tRNA ligase OS=Janthinobacterium sp. (strain Marseille) GN=metG PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/559 (62%), Positives = 432/559 (77%), Gaps = 13/559 (2%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R++FVTTALPYANG H+GHIMEYIQADIWVRFQ MQ +V+F+ ADDAHGA IM
Sbjct: 7 RKLFVTTALPYANGAFHVGHIMEYIQADIWVRFQRMQ-----GNEVHFVGADDAHGAPIM 61
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
IAAEKAG+TP++F+ NI++ RK+YLDGF+I+FDNW STDS EN +L ++IY L + AKL
Sbjct: 62 IAAEKAGLTPQQFVANIAAGRKQYLDGFHIEFDNWSSTDSPENHELSREIYRRLRDDAKL 121
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I K + QF+DP+K +FLPDRYIKGECP C KDQYGD CE CS++Y PT L +PYS L+
Sbjct: 122 ITTKSVEQFYDPVKEMFLPDRYIKGECPKCGTKDQYGDSCENCSAVYAPTDLKHPYSTLT 181
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G P+ KSS HFFF+LSD +C+ FLR+WA+ +RLQ E+ NK KEWLE + DWDISR
Sbjct: 182 GATPVRKSSDHFFFRLSDPKCVAFLREWALDGQRLQSEVANKAKEWLEGEGGLGDWDISR 241
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTE 311
DAPYFGI+IP+ KYFYVWLDAP+GYLA+LKN+F+K G R+FD F++ P+TE
Sbjct: 242 DAPYFGIEIPDAPGKYFYVWLDAPVGYLATLKNYFDKTG--------RDFDAFMADPSTE 293
Query: 312 QYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLK 371
QYHFIGKDI YFH LFWPA+LKF+ K+PNN+FVHGF+T++G+KMSKS GISPL YL+
Sbjct: 294 QYHFIGKDITYFHTLFWPAMLKFADMKVPNNVFVHGFITVSGEKMSKSRGTGISPLRYLE 353
Query: 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGY 431
IGMNPEWLRYYIA+KL++K+EDIDF S FI+ VNSDLIGKYINIASR++ FI K F G
Sbjct: 354 IGMNPEWLRYYIAAKLSSKVEDIDFTSDDFIARVNSDLIGKYINIASRAAGFITKKFDGR 413
Query: 432 LNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAK 491
+ W +D FLS+LR V+S IQ Y+ R + K L ++EQ + IN + D NKPW+LAK
Sbjct: 414 VATDWATSDDAFLSRLRNVASEIQALYDQREYGKALRAIMEQADAINAYVDANKPWELAK 473
Query: 492 NNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHK 551
+ L ++ SRLLEAFRILTIYLKP+LP LAK VE LNI+PL+W +I TPL H+
Sbjct: 474 DPAKEAALQEVCSRLLEAFRILTIYLKPVLPALAKQVEAQLNIAPLEWHHIITPLPHGHQ 533
Query: 552 INKYRHLMTRVDKNIVDNL 570
IN Y HLMTRV+ ++D L
Sbjct: 534 INPYVHLMTRVEPKMLDAL 552
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Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Janthinobacterium sp. (strain Marseille) (taxid: 375286) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0 |
| >sp|A4G3S6|SYM_HERAR Methionine--tRNA ligase OS=Herminiimonas arsenicoxydans GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/573 (59%), Positives = 417/573 (72%), Gaps = 28/573 (4%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R++FVTTALPYANG HIGHIMEYIQADIWVRFQ MQ QV F+ ADDAHGA IM
Sbjct: 7 RKLFVTTALPYANGAFHIGHIMEYIQADIWVRFQRMQ-----GNQVDFVGADDAHGAPIM 61
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
IAAEKAG+TP++F++NI++ RK+YLDGF+I FDNW STDS EN L Q+IY L KA L
Sbjct: 62 IAAEKAGLTPQQFVSNIAAGRKQYLDGFHIAFDNWSSTDSPENHQLAQQIYLDL-KKAGL 120
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I +K + QFFDP KN+FLPDRYIKGECP C+ KDQYGD CE C+++Y+PT LINPYS L+
Sbjct: 121 IASKTVEQFFDPEKNMFLPDRYIKGECPKCHTKDQYGDNCEVCAAVYSPTDLINPYSALT 180
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIH-----DKRLQPEIVNKIKEWLEK------ 240
G P++K S+HFFF LSD RC+ FL +W LQ E+ NK+KEW
Sbjct: 181 GATPVLKHSEHFFFTLSDPRCVAFLEEWVSGLDTDGKTHLQAEVANKVKEWFSARTNPDG 240
Query: 241 --DNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNEL 298
NDWDISRDAPYFGI+IP+ KYFYVWLDAP+GYLASLKN +K G
Sbjct: 241 TISEGLNDWDISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKNLLDKRG-------- 292
Query: 299 RNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTIN-GKKMS 357
NFD +++ P EQ HFIGKDI FH LFWPA+LKFSGRK PN +FVHGF+T+N G+KMS
Sbjct: 293 ENFDAYMAEPALEQIHFIGKDIVNFHTLFWPAMLKFSGRKTPNKVFVHGFLTVNNGEKMS 352
Query: 358 KSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIA 417
KS G+ PL YL +GMNPEWLRYY+A+KL+ + EDIDFN + FI+ VNSDLIGKY+NIA
Sbjct: 353 KSRGTGLDPLKYLSLGMNPEWLRYYLANKLSARNEDIDFNPEDFIARVNSDLIGKYVNIA 412
Query: 418 SRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFI 477
SR++ FI K F G + W +D F+SKLR V+S IQ Y+ R + K L ++EQ + I
Sbjct: 413 SRAAGFIAKKFDGRVVSDWATADDVFISKLRNVASEIQALYDQREYGKALRTIMEQADAI 472
Query: 478 NIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPL 537
N + D NKPW+LAK L ++ SRLLEAFRILTIYLKP+LP LAK VE LNI+PL
Sbjct: 473 NAYVDANKPWELAKKPENSAALQEVCSRLLEAFRILTIYLKPVLPELAKQVEALLNIAPL 532
Query: 538 QWINIFTPLTQNHKINKYRHLMTRVDKNIVDNL 570
QW ++ TPL NH++N Y HLMTRV+ ++D L
Sbjct: 533 QWSDVGTPLPHNHQVNPYSHLMTRVEPKMLDAL 565
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Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Herminiimonas arsenicoxydans (taxid: 204773) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|B1XWM2|SYM_LEPCP Methionine--tRNA ligase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/571 (57%), Positives = 409/571 (71%), Gaps = 12/571 (2%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
R++FVTTALPYANG+ HIGHIMEYIQADIWVRFQ + QV+F+ ADDAHGA I
Sbjct: 2 TRQLFVTTALPYANGKFHIGHIMEYIQADIWVRFQRLM-----GHQVHFVGADDAHGAPI 56
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAK 130
MIAAEKAG TP++F+ +I++ R++YLDGF+I FDNW+STD EN +L Q IY L +
Sbjct: 57 MIAAEKAGKTPQQFVADIAAGRREYLDGFHISFDNWHSTDGPENHELAQSIYRALRDNG- 115
Query: 131 LIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
LI + I QFFDP K +FLPDR+IKGECP C AKDQYGD CE C ++YTPT++ NPYS L
Sbjct: 116 LIEVRSIEQFFDPEKGMFLPDRFIKGECPKCGAKDQYGDSCEVCGAVYTPTEVRNPYSAL 175
Query: 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNK----FND 246
SG P++KSS H+FFKLSD RC +L +W +LQ E++NK+KEW KD++ D
Sbjct: 176 SGATPVLKSSDHYFFKLSDPRCAAYLEQWTHEGGKLQQEVINKVKEWFTKDDEGKGGLGD 235
Query: 247 WDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFIS 306
WDISRDAPYFGI+IP+ KYFYVWLDAPIGYLASLKN+F+KGGP+ KY E R+FDEFI+
Sbjct: 236 WDISRDAPYFGIEIPDAPGKYFYVWLDAPIGYLASLKNYFDKGGPRAKYGEARSFDEFIA 295
Query: 307 SPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGIS 365
P EQYHFIGKDI YFH LFWPA L FSGRK PNN+FVHGFMT+ NG+KMSKS G+
Sbjct: 296 DPAVEQYHFIGKDITYFHTLFWPATLHFSGRKTPNNVFVHGFMTVNNGEKMSKSRGTGLD 355
Query: 366 PLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIE 425
PL YL +GMN EWLRYYIA+KLN +ED+DFN F+S VN+DL+GKYINIASR++ F+
Sbjct: 356 PLKYLSLGMNAEWLRYYIAAKLNAHVEDVDFNPDDFVSRVNADLVGKYINIASRAAGFLA 415
Query: 426 KYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485
K F G L+ D + L LR ++ YE R F K L V+ + +N + D NK
Sbjct: 416 KRFGGRLSSDLGVDGMSLLETLRAHRDTLTGLYEAREFGKALREVMGLADRVNEYVDANK 475
Query: 486 PWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTP 545
PW+LAK LH + S +EAFR+LTIYLKP+LP LA VE+FL + PL +
Sbjct: 476 PWELAKKEGADAVLHDVCSVCIEAFRLLTIYLKPVLPALAAQVESFLQVEPLTFAQAHRA 535
Query: 546 LTQNHKINKYRHLMTRVDKNIVDNLLKNKNI 576
L H I Y+HLM RVD ++D L + +
Sbjct: 536 LGA-HTIGSYQHLMQRVDPKLLDALFEPPAV 565
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Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (taxid: 395495) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|A2SEY3|SYM_METPP Methionine--tRNA ligase OS=Methylibium petroleiphilum (strain PM1) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/571 (55%), Positives = 405/571 (70%), Gaps = 25/571 (4%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R++FVTTALPYANG HIGHIMEYIQADIWVRFQ MQ V+F+ ADDAHGA IM
Sbjct: 3 RQLFVTTALPYANGHFHIGHIMEYIQADIWVRFQRMQ-----GHAVHFVGADDAHGAPIM 57
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
IAAEKAG TP++F+ +I++ RK YLDGF+I FDNW+STD EN L Q Y L + L
Sbjct: 58 IAAEKAGKTPQQFVADIAAGRKPYLDGFHIAFDNWHSTDGPENHQLAQDTYRAL-RRNGL 116
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I ++I QFFDP+K +FLPDRYIKGECP C AKDQYGD CE C ++Y PT+L NPYS L+
Sbjct: 117 IFTREIEQFFDPVKAMFLPDRYIKGECPKCGAKDQYGDSCEVCGAVYAPTELKNPYSTLT 176
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWA------IHDKRLQPEIVNKIKEWLEKDNK-- 243
G P++K+S+H FF+LS RC+DFL+ W RLQ E++NKIKEW D +
Sbjct: 177 GATPVMKTSEHHFFQLSSPRCLDFLKDWTHGSAPISGQPRLQAEVLNKIKEWFATDEQGH 236
Query: 244 --FNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNF 301
DWDISRDAPYFGI+IP+ KYFYVWLDAPIGYLASLKN+F+K G +F
Sbjct: 237 GGLADWDISRDAPYFGIEIPDAPGKYFYVWLDAPIGYLASLKNYFDKQG--------LDF 288
Query: 302 DEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNK 361
+ F++ P TEQ HFIGKDI YFH LFWPA+L FSGR+ P+++FVHGF+T++G+KMSKS
Sbjct: 289 EAFMADPKTEQVHFIGKDITYFHTLFWPAMLHFSGRRTPDHVFVHGFITVSGEKMSKSRG 348
Query: 362 IGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSS 421
GISPL YL+IGMN EWLRYYIA+KLN ++ED+DFN F++ VNSDL+GKYINIASR++
Sbjct: 349 TGISPLRYLEIGMNAEWLRYYIAAKLNGRVEDVDFNPDDFVARVNSDLVGKYINIASRAA 408
Query: 422 SFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFF 481
F+ K F G L + ++ T L L+ I + YE+R + K L + + +N +
Sbjct: 409 GFLSKRFDGRLTAELPAESRTLLEGLQAARDDIARLYEDREYAKALREAMALADRVNEYV 468
Query: 482 DQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWIN 541
D NKPW+LAK +L ++ S +EAFR+LTIYLKP+LP LA VE FL + P+++ +
Sbjct: 469 DANKPWELAKQAGQDARLQQVCSTCIEAFRLLTIYLKPVLPALAAQVEGFLKVEPMRFAD 528
Query: 542 IFTPLTQNHKINKYRHLMTRVDKNIVDNLLK 572
L H I++Y+HLM RVD ++D L +
Sbjct: 529 AGR-LLGAHAISEYKHLMQRVDPKLLDALFE 558
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Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Methylibium petroleiphilum (strain PM1) (taxid: 420662) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q12F12|SYM_POLSJ Methionine--tRNA ligase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/568 (56%), Positives = 397/568 (69%), Gaps = 25/568 (4%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
RR+FVTTALPYANG HIGHIMEYIQADIWVR+Q MQ +V F+ ADDAHGA IM
Sbjct: 4 RRLFVTTALPYANGNFHIGHIMEYIQADIWVRYQRMQ-----GHEVNFVGADDAHGAPIM 58
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
IAAEKAG TP++F+ +I++ RK YLDGF+I FDNW+STD EN L Q+IY L KA L
Sbjct: 59 IAAEKAGKTPQQFVADIAAGRKPYLDGFHISFDNWHSTDGPENHQLAQQIYLDL-KKAGL 117
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I K + QFFDP KN+FLPDR+IKG+CP C AKDQYGD CE C ++Y PT LINPYS LS
Sbjct: 118 IETKTVEQFFDPDKNMFLPDRFIKGQCPKCGAKDQYGDNCEVCGAVYAPTDLINPYSALS 177
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLE--------KDNK 243
G P++KSS+HFFF+LSD RC+ FL +W D LQ E+ NK+KEW
Sbjct: 178 GATPVLKSSEHFFFRLSDPRCVAFLEQW-TQDGMLQTEVANKVKEWFSPRQNVDGTTSEG 236
Query: 244 FNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDE 303
+DWDISRDAPYFGI+IP+ KYFYVWLDAP+GYLASLKN +K G ++D
Sbjct: 237 LDDWDISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKNLLDKKG--------LDYDA 288
Query: 304 FISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKI 362
+++ P EQYHFIGKDI FH LFWPA+L FSGRK P+N+FVHGF+T+ NG+KMSKS
Sbjct: 289 YMADPGLEQYHFIGKDIITFHTLFWPAMLHFSGRKTPDNVFVHGFLTVNNGEKMSKSRGT 348
Query: 363 GISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSS 422
G+ PL YL +GMNPEWLRYY+A+KLN + EDIDFN + F++ VN+DL+GKYINIASR++
Sbjct: 349 GLDPLKYLNLGMNPEWLRYYLAAKLNARNEDIDFNPEDFMARVNADLVGKYINIASRAAG 408
Query: 423 FIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482
FI K F G L + D D L LR S +IQ+ Y R + K L V++ + +N + D
Sbjct: 409 FISKRFDGRLG-EPSADGDALLEVLRGASPAIQELYAEREYGKALREVMQLADRVNGYVD 467
Query: 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINI 542
QNKPW+LAK +L + + +EAFR+LTIYLKP+LP L VE FL L + +
Sbjct: 468 QNKPWELAKQPGMEARLLDVCTVCIEAFRLLTIYLKPVLPALGTQVEDFLKTGSLTFRDA 527
Query: 543 FTPLTQNHKINKYRHLMTRVDKNIVDNL 570
L H I +Y+HLM RVD +D L
Sbjct: 528 GASLGSGHVIGEYKHLMQRVDVKQLDAL 555
|
Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Polaromonas sp. (strain JS666 / ATCC BAA-500) (taxid: 296591) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|A1TTU1|SYM_ACIAC Methionine--tRNA ligase OS=Acidovorax citrulli (strain AAC00-1) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/571 (54%), Positives = 398/571 (69%), Gaps = 25/571 (4%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
R+IFVTTALPYANG HIGHIMEYIQADIWVRFQ MQ +V F+ ADD HGA I
Sbjct: 3 ARKIFVTTALPYANGNFHIGHIMEYIQADIWVRFQRMQ-----GAEVNFVGADDTHGAPI 57
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAK 130
MIAAEKAG TP++F+ +I++ RK YL+GF+I+FDNW+STD+ EN +L ++IY L A
Sbjct: 58 MIAAEKAGKTPQQFVADIAAGRKPYLEGFHIRFDNWHSTDAPENHELARQIYRDL-QAAG 116
Query: 131 LIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
LI + I QFFDP KN+FLPDR+IKGECP C+A+DQYGD CE C ++Y PT LI PYS L
Sbjct: 117 LIETRTIEQFFDPEKNMFLPDRFIKGECPRCHARDQYGDNCENCGAVYAPTDLIEPYSAL 176
Query: 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLE--------KDN 242
SG KP++KSS HFFF+LSD RC+ FL++W D RLQPE+ NK+KEW
Sbjct: 177 SGAKPVLKSSDHFFFQLSDPRCVAFLQEW-TQDGRLQPEVANKVKEWFSVRTNPDGTTSE 235
Query: 243 KFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFD 302
DWDISRDAPYFGI+IP+ KYFYVWLDAP+GYLASLKN EK G +++D
Sbjct: 236 GLGDWDISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKNLLEKRG--------QSYD 287
Query: 303 EFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNK 361
++++ P EQ HFIGKDI FH LFWPA+LKFSGRK P+ +FVHGF+T+ NG+KMSKS
Sbjct: 288 DYVADPQLEQVHFIGKDIVTFHTLFWPAMLKFSGRKTPDAVFVHGFLTVNNGEKMSKSRG 347
Query: 362 IGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSS 421
G+ PL YL +GMN EWLRYY+A+KLN + EDIDFN++ F++ VNSDLIGK++NIASR++
Sbjct: 348 TGLDPLKYLGLGMNAEWLRYYLAAKLNGRNEDIDFNAEDFMARVNSDLIGKFVNIASRAA 407
Query: 422 SFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFF 481
F+ K F G L D L LR + +I + YE R+ + + + + +N +
Sbjct: 408 GFLTKRFGGRLGAP-DADGAALLEALRAQAGAIAEAYERRDTARAVRETMLLADRVNEYV 466
Query: 482 DQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWIN 541
D KPW+LAK L + +EAFR+LT+YLKP+LP LA VE FLN+ PL + +
Sbjct: 467 DARKPWELAKQEGQEAALQAACTTCIEAFRLLTLYLKPVLPALAAQVEAFLNVQPLTFAD 526
Query: 542 IFTPLTQNHKINKYRHLMTRVDKNIVDNLLK 572
L + H I Y+HLM RVD ++ L +
Sbjct: 527 APALLGEGHAIGAYQHLMQRVDIKQLEALFE 557
|
Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Acidovorax citrulli (strain AAC00-1) (taxid: 397945) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q21TB9|SYM_RHOFD Methionine--tRNA ligase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/572 (55%), Positives = 399/572 (69%), Gaps = 17/572 (2%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R++FVTTALPYANG HIGHIMEYIQADIWVR+Q M V+F+CADD HGA IM
Sbjct: 3 RQLFVTTALPYANGNFHIGHIMEYIQADIWVRYQRMM-----GNAVHFVCADDCHGAPIM 57
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
IAAEK G TP++F+ +I+S RK YLDGF+I FDNW+STD EN +L Q IY L A L
Sbjct: 58 IAAEKVGKTPQQFVADIASGRKPYLDGFHIGFDNWHSTDGAENHELAQAIYRDL-KAAGL 116
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I + I QFFD KN+FLPDR+IKGECP C AKDQYGD CE C ++Y+PT+L NPYS LS
Sbjct: 117 ISTRVIAQFFDTEKNMFLPDRFIKGECPKCGAKDQYGDNCEECGAVYSPTELKNPYSALS 176
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAI-----HDKRLQPEIVNKIKEWL----EKDN 242
G P+++ S+H+FFKLSD RC++FL +W RLQ E+ NKIKEWL E
Sbjct: 177 GVTPVLRDSEHYFFKLSDPRCVEFLEQWTTDTNPRGQSRLQAEVYNKIKEWLLPDAEGKR 236
Query: 243 KFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFD 302
DWDISRDAPYFGI+IP+ KYFYVWLDAPIGYLA+LKN F K +++D
Sbjct: 237 DLGDWDISRDAPYFGIEIPDAPGKYFYVWLDAPIGYLAALKNRFIKLAGDATTGA-QHYD 295
Query: 303 EFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKI 362
+F++ P TEQYHFIGKDI FH LFWPA+L FSGRK PN +FVHGF+T+N +KMSKS
Sbjct: 296 DFMADPATEQYHFIGKDIITFHTLFWPAMLHFSGRKTPNAVFVHGFLTVNSEKMSKSRGT 355
Query: 363 GISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSS 422
G+ PL YL +GMNPEWLRYY+A+KL + ED++F+ + F++ VNSDL+GKYINIASR++
Sbjct: 356 GLDPLKYLSLGMNPEWLRYYLATKLTARNEDVEFSPEDFMARVNSDLVGKYINIASRAAG 415
Query: 423 FIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482
FI K F G L + D L ++++ +SI++ YE R F K L + + +N + D
Sbjct: 416 FIAKRFGGQLGV-ISDDGAALLKQIQIERTSIEQLYEAREFAKALRETMLLADRVNEYVD 474
Query: 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINI 542
NKPW+LAK +LH + + +EAFR LT YLKP+LP LA VE FLNI PL + ++
Sbjct: 475 ANKPWELAKQTGMETRLHDVCTVCIEAFRALTAYLKPVLPLLAAQVEVFLNIEPLSFASV 534
Query: 543 FTPLTQNHKINKYRHLMTRVDKNIVDNLLKNK 574
L H+I Y+HLM RVD ++ L + +
Sbjct: 535 SQTLGAVHRIGDYKHLMQRVDIKQLEALFEAQ 566
|
Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) (taxid: 338969) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|B9MEX0|SYM_ACIET Methionine--tRNA ligase OS=Acidovorax ebreus (strain TPSY) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/571 (55%), Positives = 395/571 (69%), Gaps = 24/571 (4%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
R+IFVTTALPYANG HIGHIMEYIQAD WVR Q MQ V F+ ADDAHGA I
Sbjct: 3 ARKIFVTTALPYANGNFHIGHIMEYIQADTWVRAQRMQ-----GNAVNFVGADDAHGAPI 57
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAK 130
MIAAEKAG TP++F+ +I++ RK+YLDGF+I FDNW +TDS EN +L Q+IY L A
Sbjct: 58 MIAAEKAGKTPQQFVADIAAGRKQYLDGFHIAFDNWSNTDSPENHELSQQIYLDL-KAAG 116
Query: 131 LIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
I + I QFFDP KN+FLPDR+IKGECP C+AKDQYGD CE CSS+Y PT LINPYS L
Sbjct: 117 FIETRTIEQFFDPEKNMFLPDRFIKGECPRCHAKDQYGDNCEVCSSVYAPTDLINPYSAL 176
Query: 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWL--------EKDN 242
SG KP++K+S+HFFFKLSD R ++FL +W + + +QPE+ KIKEW
Sbjct: 177 SGAKPVLKTSEHFFFKLSDPRAVEFLTEWTQNGQHVQPEVAAKIKEWFGTRTNPDGTTSE 236
Query: 243 KFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFD 302
+DWDISRDAPYFGI+IP+ KYFYVWLDAP+GYLASLKN K G ++D
Sbjct: 237 GLDDWDISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKNLLNKRG--------EDYD 288
Query: 303 EFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNK 361
+++ P EQYHFIGKDI FH LFWPA+LKFSGRK P I VHGFMT+ NG+KMSKS
Sbjct: 289 AYMADPQLEQYHFIGKDIITFHTLFWPAMLKFSGRKTPTKICVHGFMTVNNGEKMSKSRG 348
Query: 362 IGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSS 421
G+ PL YL +GMNPEWLRYY+ +KLN K EDIDFN + F++ VNSDLIGKY+NIASR++
Sbjct: 349 TGLDPLKYLALGMNPEWLRYYLGAKLNGKNEDIDFNPEDFMARVNSDLIGKYVNIASRAA 408
Query: 422 SFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFF 481
FI K F G L + D L++LR + I YE R+ + + + + +N +
Sbjct: 409 GFIFKRFGGKLG-EVSADGQALLAQLREQAGPIVAAYEARDTARAVRETMLLCDRVNSYV 467
Query: 482 DQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWIN 541
D NKPW+LAK +L + + +EAFRILTIYLKPILP +A V FL + P Q+
Sbjct: 468 DANKPWELAKQEGMEARLQDVCTTCIEAFRILTIYLKPILPQVAAEVARFLIVPPEQFAE 527
Query: 542 IFTPLTQNHKINKYRHLMTRVDKNIVDNLLK 572
+ PL H+I +Y+HLM RV + +D L +
Sbjct: 528 VAQPLGAGHQIGQYQHLMQRVTQEQLDALFE 558
|
Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Acidovorax ebreus (strain TPSY) (taxid: 535289) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|A1WBH1|SYM_ACISJ Methionine--tRNA ligase OS=Acidovorax sp. (strain JS42) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/571 (55%), Positives = 395/571 (69%), Gaps = 24/571 (4%)
Query: 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
R+IFVTTALPYANG HIGHIMEYIQAD WVR Q MQ V F+ ADDAHGA I
Sbjct: 3 ARKIFVTTALPYANGNFHIGHIMEYIQADTWVRAQRMQ-----GNAVNFVGADDAHGAPI 57
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAK 130
MIAAEKAG TP++F+ +I++ RK+YLDGF+I FDNW +TDS EN +L Q+IY L A
Sbjct: 58 MIAAEKAGKTPQQFVADIAAGRKQYLDGFHIAFDNWSNTDSPENHELSQQIYLDL-KAAG 116
Query: 131 LIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
I + I QFFDP KN+FLPDR+IKGECP C+AKDQYGD CE CSS+Y PT LINPYS L
Sbjct: 117 FIETRTIEQFFDPEKNMFLPDRFIKGECPRCHAKDQYGDNCEVCSSVYAPTDLINPYSAL 176
Query: 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWL--------EKDN 242
SG KP++K+S+HFFFKLSD R ++FL +W + + +QPE+ KIKEW
Sbjct: 177 SGAKPVLKTSEHFFFKLSDPRAVEFLTEWTQNGQHVQPEVAAKIKEWFGTRTNPDGTTSE 236
Query: 243 KFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFD 302
+DWDISRDAPYFGI+IP+ KYFYVWLDAP+GYLASLKN K G ++D
Sbjct: 237 GLDDWDISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKNLLNKRG--------EDYD 288
Query: 303 EFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNK 361
+++ P EQYHFIGKDI FH LFWPA+LKFSGRK P I VHGFMT+ NG+KMSKS
Sbjct: 289 AYMADPQLEQYHFIGKDIITFHTLFWPAMLKFSGRKTPTKICVHGFMTVNNGEKMSKSRG 348
Query: 362 IGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSS 421
G+ PL YL +GMNPEWLRYY+ +KLN K EDIDFN + F++ VNSDLIGKY+NIASR++
Sbjct: 349 TGLDPLKYLALGMNPEWLRYYLGAKLNGKNEDIDFNPEDFMARVNSDLIGKYVNIASRAA 408
Query: 422 SFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFF 481
FI K F G L + D L++LR + I YE R+ + + + + +N +
Sbjct: 409 GFIFKRFGGKLG-EVSADGQALLAQLREQAGPIVAAYEARDTARAVRETMLLCDRVNSYV 467
Query: 482 DQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWIN 541
D NKPW+LAK +L + + +EAFRILTIYLKPILP +A V FL + P Q+
Sbjct: 468 DANKPWELAKQEGMEARLQDVCTTCIEAFRILTIYLKPILPQVAAEVARFLIVPPEQFAE 527
Query: 542 IFTPLTQNHKINKYRHLMTRVDKNIVDNLLK 572
+ PL H+I +Y+HLM RV + +D L +
Sbjct: 528 VAQPLGAGHQIGQYQHLMQRVTQEQLDALFE 558
|
Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Acidovorax sp. (strain JS42) (taxid: 232721) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|A1VKF9|SYM_POLNA Methionine--tRNA ligase OS=Polaromonas naphthalenivorans (strain CJ2) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/582 (54%), Positives = 404/582 (69%), Gaps = 35/582 (6%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
RR+FVTTALPYANG HIGHIMEYIQADIWVR+Q MQ V F+ ADDAHGA IM
Sbjct: 4 RRLFVTTALPYANGNFHIGHIMEYIQADIWVRYQRMQ-----GNAVNFVGADDAHGAPIM 58
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYN--KA 129
IAAEKAG TP++F+ +I+S RK YLDGF+I FDNW STDS EN +L ++IY L + +
Sbjct: 59 IAAEKAGKTPQQFVADIASGRKPYLDGFHISFDNWSSTDSPENHELARQIYRDLRDNPQG 118
Query: 130 KLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSI 189
LI K I QFFDP KN+FLPDR+IKGECP C+AKDQYGD CE C ++Y PT LINPYS
Sbjct: 119 SLIETKTIEQFFDPEKNMFLPDRFIKGECPKCHAKDQYGDNCEVCGAVYAPTDLINPYSA 178
Query: 190 LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLE--------KD 241
LSG P++KSS+HFFFKLSD RC++FL W D +LQPE+ NK+KEW +
Sbjct: 179 LSGVTPVLKSSEHFFFKLSDARCVEFLESW-TQDGKLQPEVANKVKEWFSVRENADGTQS 237
Query: 242 NKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNF 301
DWDISRDAPYFGI+IP+ KYFYVWLDAP+GYLASLKN ++ G ++
Sbjct: 238 EGLGDWDISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKNLLDRRG--------ESY 289
Query: 302 DEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSN 360
D++++ P EQYHFIGKDI FH LFWPA+L FSGRK P+NIFVHGF+T+ NG+KMSKS
Sbjct: 290 DDYMADPKLEQYHFIGKDIVTFHTLFWPAMLHFSGRKTPDNIFVHGFLTVNNGEKMSKSR 349
Query: 361 KIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRS 420
G+ PL YL +GMNPEWLRYY+A+KLN + EDIDFN+ F++ VNSDL+GK+INIASR+
Sbjct: 350 GTGLDPLKYLSLGMNPEWLRYYLAAKLNARNEDIDFNADDFMARVNSDLVGKFINIASRA 409
Query: 421 SSFIEKYFKG--------YLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIE 472
+ F+ K F G + N +S++ ++ I + YE R K + ++E
Sbjct: 410 AGFLTKRFDGKIGDASGDFPNPDGQGYPSLAISEIGACAAEISELYEQRELGKAMRKIME 469
Query: 473 QTNFINIFFDQNKPWKLAKNNIYHE--KLHKISSRLLEAFRILTIYLKPILPNLAKSVET 530
+ +N +D +PWKLAK+ + +L +I S +E FR+LT+YLKP+LP LA VE+
Sbjct: 470 IADGLNSDWDAAQPWKLAKSEEPQQLARLQRICSNTIEGFRLLTLYLKPVLPALAIEVES 529
Query: 531 FLNISPLQWINIFTPLTQNHKINKYRHLMTRVDKNIVDNLLK 572
FL I PL + + L + H I Y+HLM RVD +D L +
Sbjct: 530 FLKIDPLNFSDATKALPKGHPIGDYKHLMQRVDVKQLDALFE 571
|
Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Polaromonas naphthalenivorans (strain CJ2) (taxid: 365044) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 576 | ||||||
| 300312383 | 690 | methionyl-tRNA synthetase [Herbaspirillu | 0.947 | 0.791 | 0.624 | 0.0 | |
| 398836261 | 692 | protein containing beta chain of methion | 0.947 | 0.789 | 0.617 | 0.0 | |
| 152979917 | 700 | methionyl-tRNA synthetase [Janthinobacte | 0.947 | 0.78 | 0.622 | 0.0 | |
| 399017208 | 687 | protein containing beta chain of methion | 0.947 | 0.794 | 0.617 | 0.0 | |
| 340788661 | 705 | methionyl-tRNA synthetase [Collimonas fu | 0.946 | 0.773 | 0.623 | 0.0 | |
| 329915423 | 731 | Methionyl-tRNA synthetase [Oxalobacterac | 0.951 | 0.749 | 0.605 | 0.0 | |
| 415943372 | 660 | Methionyl-tRNA synthetase [Herbaspirillu | 0.913 | 0.796 | 0.614 | 0.0 | |
| 237746649 | 695 | methionyl-tRNA synthetase [Oxalobacter f | 0.954 | 0.791 | 0.589 | 0.0 | |
| 409406809 | 660 | methionyl-tRNA synthetase [Herbaspirillu | 0.911 | 0.795 | 0.615 | 0.0 | |
| 134094215 | 710 | methionyl-tRNA synthetase [Herminiimonas | 0.946 | 0.767 | 0.598 | 0.0 |
| >gi|300312383|ref|YP_003776475.1| methionyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gi|300075168|gb|ADJ64567.1| methionyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/559 (62%), Positives = 432/559 (77%), Gaps = 13/559 (2%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R++FVTTALPYANG HIGHIMEYIQADIWVRFQ MQ +V+F+ ADDAHGA IM
Sbjct: 7 RQLFVTTALPYANGAFHIGHIMEYIQADIWVRFQRMQ-----GNEVHFVGADDAHGAPIM 61
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
IAAEKAG+TP++F+ NI++ RK+YLDGF+I FDNW STDS EN +L Q+IY L ++AKL
Sbjct: 62 IAAEKAGITPQQFVANIAAGRKQYLDGFHIAFDNWSSTDSPENHELSQEIYRALRDEAKL 121
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I K I+QF+DP+KN+FLPDRYIKGECP C KDQYGD CE CS++Y+PT L NPYS LS
Sbjct: 122 ISTKTIDQFYDPVKNMFLPDRYIKGECPKCGTKDQYGDSCENCSAVYSPTDLKNPYSTLS 181
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G P++KSS+HFFFKLSD +C+ FLR+WA+ RLQPE+ NK KEWL+ + DWDISR
Sbjct: 182 GATPVMKSSEHFFFKLSDPKCVAFLREWALDSNRLQPEVANKAKEWLDGEGGLGDWDISR 241
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTE 311
DAPYFGI+IP+ KYFYVWLDAPIGYLASLKN+F K G R+FD F++ TE
Sbjct: 242 DAPYFGIEIPDAPGKYFYVWLDAPIGYLASLKNYFAKTG--------RDFDAFMADDKTE 293
Query: 312 QYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLK 371
QYHFIGKDI YFH LFWPA+LKF+GRK PNN+F HGF+T++G+KMSKS GISPL YL
Sbjct: 294 QYHFIGKDITYFHTLFWPAMLKFAGRKTPNNVFAHGFITVSGEKMSKSRGTGISPLRYLD 353
Query: 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGY 431
IGMNPEWLRYYIA+KLN K+ED+DFN F++ VN+DLIGKY+NIASR++ FI K F+G
Sbjct: 354 IGMNPEWLRYYIAAKLNAKVEDVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFEGR 413
Query: 432 LNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAK 491
++ +W +D FL+KLR V+ I+ YE R + K L +V+EQ + IN + D NKPW+LAK
Sbjct: 414 VSTQWATADDAFLAKLRGVADEIRSLYEQREYGKALRLVMEQADAINAYVDANKPWELAK 473
Query: 492 NNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHK 551
++ +LH++ SRLLEAFRILT+YLKP+LP LA VE FL + P QW ++ PL H
Sbjct: 474 DSARDAQLHEVCSRLLEAFRILTVYLKPVLPQLAAQVEAFLQVQPFQWGDVAMPLADGHV 533
Query: 552 INKYRHLMTRVDKNIVDNL 570
I+ Y HLM RVD ++D L
Sbjct: 534 IHAYSHLMQRVDPKMLDAL 552
|
Source: Herbaspirillum seropedicae SmR1 Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|398836261|ref|ZP_10593602.1| protein containing beta chain of methionyl-tRNA synthetase [Herbaspirillum sp. YR522] gi|398212579|gb|EJM99183.1| protein containing beta chain of methionyl-tRNA synthetase [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/559 (61%), Positives = 428/559 (76%), Gaps = 13/559 (2%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R++FVTTALPYANG HIGHIMEYIQADIWVRFQ MQ + +V+F+ ADDAHGA IM
Sbjct: 7 RQLFVTTALPYANGAFHIGHIMEYIQADIWVRFQRMQGN-----EVHFVGADDAHGAPIM 61
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
IAAEKA +TP++F+ NI++ RK+YLDGF+I FDNW STDS EN L Q IY L + A L
Sbjct: 62 IAAEKANVTPQQFVANIAAGRKQYLDGFHIAFDNWSSTDSPENHQLSQDIYRALRDDAGL 121
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I K I QFFDP+KN+FLPDRYIKGECP C KDQYGD CE CS++Y PT LINPYS LS
Sbjct: 122 ISTKTIEQFFDPVKNMFLPDRYIKGECPKCGTKDQYGDSCENCSAVYAPTDLINPYSTLS 181
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G P++KSS+HFFF+LSD +C+ FLR+WA+ RLQPE+ NK +EWL+ + DWDISR
Sbjct: 182 GATPVMKSSEHFFFRLSDPKCVAFLREWALDGDRLQPEVANKAREWLDGEGGLGDWDISR 241
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTE 311
DAPYFGI+IP+ KYFYVWLDAPIGYLASLKN+F K G R+FD F++ TE
Sbjct: 242 DAPYFGIEIPDAPGKYFYVWLDAPIGYLASLKNYFGKIG--------RDFDAFMADDKTE 293
Query: 312 QYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLK 371
QYHFIGKDI YFH LFWPA+LKF+GR++P N+F HGF+T++G+KMSKS GISPL YL
Sbjct: 294 QYHFIGKDITYFHTLFWPAMLKFAGRRVPTNVFAHGFITVSGEKMSKSRGTGISPLRYLD 353
Query: 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGY 431
+GMNPEWLRYYIA+KLN K+ED+DFN F++ VN+DLIGKY+NIASR++ FI K F+G
Sbjct: 354 VGMNPEWLRYYIAAKLNAKVEDVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFEGR 413
Query: 432 LNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAK 491
++ W +D FL++LR V+ ++ YE R + K +V+EQ + IN + D NKPW+LAK
Sbjct: 414 VSTAWASADDAFLARLRGVADDVRTLYEQREYGKAQRVVMEQADAINAYVDANKPWELAK 473
Query: 492 NNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHK 551
++ +LH++ SRLLEAFRILTIYLKP+LP LA VETFLN++P QW +I + L H
Sbjct: 474 DSARDAQLHEVCSRLLEAFRILTIYLKPVLPALAAQVETFLNVAPFQWRDIGSALPDGHV 533
Query: 552 INKYRHLMTRVDKNIVDNL 570
IN Y HLM RVD ++D L
Sbjct: 534 INAYAHLMQRVDPKMLDAL 552
|
Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|152979917|ref|YP_001352802.1| methionyl-tRNA synthetase [Janthinobacterium sp. Marseille] gi|187647729|sp|A6SX05.1|SYM_JANMA RecName: Full=Methionine--tRNA ligase; AltName: Full=Methionyl-tRNA synthetase; Short=MetRS gi|151279994|gb|ABR88404.1| Methionyl-tRNA synthetase [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/559 (62%), Positives = 432/559 (77%), Gaps = 13/559 (2%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R++FVTTALPYANG H+GHIMEYIQADIWVRFQ MQ +V+F+ ADDAHGA IM
Sbjct: 7 RKLFVTTALPYANGAFHVGHIMEYIQADIWVRFQRMQ-----GNEVHFVGADDAHGAPIM 61
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
IAAEKAG+TP++F+ NI++ RK+YLDGF+I+FDNW STDS EN +L ++IY L + AKL
Sbjct: 62 IAAEKAGLTPQQFVANIAAGRKQYLDGFHIEFDNWSSTDSPENHELSREIYRRLRDDAKL 121
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I K + QF+DP+K +FLPDRYIKGECP C KDQYGD CE CS++Y PT L +PYS L+
Sbjct: 122 ITTKSVEQFYDPVKEMFLPDRYIKGECPKCGTKDQYGDSCENCSAVYAPTDLKHPYSTLT 181
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G P+ KSS HFFF+LSD +C+ FLR+WA+ +RLQ E+ NK KEWLE + DWDISR
Sbjct: 182 GATPVRKSSDHFFFRLSDPKCVAFLREWALDGQRLQSEVANKAKEWLEGEGGLGDWDISR 241
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTE 311
DAPYFGI+IP+ KYFYVWLDAP+GYLA+LKN+F+K G R+FD F++ P+TE
Sbjct: 242 DAPYFGIEIPDAPGKYFYVWLDAPVGYLATLKNYFDKTG--------RDFDAFMADPSTE 293
Query: 312 QYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLK 371
QYHFIGKDI YFH LFWPA+LKF+ K+PNN+FVHGF+T++G+KMSKS GISPL YL+
Sbjct: 294 QYHFIGKDITYFHTLFWPAMLKFADMKVPNNVFVHGFITVSGEKMSKSRGTGISPLRYLE 353
Query: 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGY 431
IGMNPEWLRYYIA+KL++K+EDIDF S FI+ VNSDLIGKYINIASR++ FI K F G
Sbjct: 354 IGMNPEWLRYYIAAKLSSKVEDIDFTSDDFIARVNSDLIGKYINIASRAAGFITKKFDGR 413
Query: 432 LNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAK 491
+ W +D FLS+LR V+S IQ Y+ R + K L ++EQ + IN + D NKPW+LAK
Sbjct: 414 VATDWATSDDAFLSRLRNVASEIQALYDQREYGKALRAIMEQADAINAYVDANKPWELAK 473
Query: 492 NNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHK 551
+ L ++ SRLLEAFRILTIYLKP+LP LAK VE LNI+PL+W +I TPL H+
Sbjct: 474 DPAKEAALQEVCSRLLEAFRILTIYLKPVLPALAKQVEAQLNIAPLEWHHIITPLPHGHQ 533
Query: 552 INKYRHLMTRVDKNIVDNL 570
IN Y HLMTRV+ ++D L
Sbjct: 534 INPYVHLMTRVEPKMLDAL 552
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|399017208|ref|ZP_10719406.1| protein containing beta chain of methionyl-tRNA synthetase [Herbaspirillum sp. CF444] gi|398104112|gb|EJL94266.1| protein containing beta chain of methionyl-tRNA synthetase [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/559 (61%), Positives = 425/559 (76%), Gaps = 13/559 (2%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R++FVTTALPYANG HIGHIMEYIQADIWVRFQ MQ +V+F+ ADDAHGA IM
Sbjct: 7 RQLFVTTALPYANGAFHIGHIMEYIQADIWVRFQRMQ-----GHEVHFVGADDAHGAPIM 61
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
IAAEKAG+TP++F+ +I++ RK+YLDGF+I FDNW STDS EN L Q IY L + A+L
Sbjct: 62 IAAEKAGVTPQQFVADIAAGRKQYLDGFHIAFDNWSSTDSQENHQLSQDIYRALRDDARL 121
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I K I+QFFDP+K++FLPDRYIKGECP C KDQYGD CE CS++Y PT L NPYS LS
Sbjct: 122 ITTKTIDQFFDPVKSMFLPDRYIKGECPKCGTKDQYGDSCENCSAVYAPTDLKNPYSTLS 181
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G P++KSS+HFFFKLSD +C+ FLR+WA+ + RLQPE+ NK +EWL+ ++ DWDISR
Sbjct: 182 GATPVMKSSEHFFFKLSDPKCVAFLREWALDNNRLQPEVANKCREWLDGESGLGDWDISR 241
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTE 311
DAPYFGI+IP+ KYFYVWLDAPIGYLASLKN+F K G R+FD F++ TE
Sbjct: 242 DAPYFGIEIPDAPGKYFYVWLDAPIGYLASLKNYFGKTG--------RDFDAFMADDKTE 293
Query: 312 QYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLK 371
QYHFIGKDI YFH LFWPA+LKF+GRK P N+F HGF+T++G+KMSKS GISPL YL
Sbjct: 294 QYHFIGKDITYFHTLFWPAMLKFAGRKTPTNVFAHGFITVSGEKMSKSRGTGISPLRYLD 353
Query: 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGY 431
IGMNPEWLRYYIA+KLN K+ED+DFN F++ VN+DLIGKY+NIASR++ FI K F G
Sbjct: 354 IGMNPEWLRYYIAAKLNAKVEDVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFDGK 413
Query: 432 LNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAK 491
L+ W D+D FL+KLR ++ I YE R + K L ++EQ + IN + D NKPW+LAK
Sbjct: 414 LSTSWATDDDAFLAKLRGIAPEILALYEQREYGKALRAIMEQADVINAYVDANKPWELAK 473
Query: 492 NNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHK 551
+ +LH++ SRLLEAFRILT+YLKP+LP LA VE FL ++P W ++ T L H
Sbjct: 474 DTAKDAQLHEVCSRLLEAFRILTVYLKPVLPQLAAQVEGFLKVAPFAWADVQTALPDGHI 533
Query: 552 INKYRHLMTRVDKNIVDNL 570
IN Y HLM RVD ++D L
Sbjct: 534 INAYAHLMQRVDPKMLDAL 552
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|340788661|ref|YP_004754126.1| methionyl-tRNA synthetase [Collimonas fungivorans Ter331] gi|340553928|gb|AEK63303.1| Methionyl-tRNA synthetase [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/563 (62%), Positives = 427/563 (75%), Gaps = 18/563 (3%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R++FVTTALPYAN HIGHIMEYIQADIWVRFQ MQ +V F+ ADDAHGA IM
Sbjct: 18 RQLFVTTALPYANAAFHIGHIMEYIQADIWVRFQRMQ-----GHEVNFVGADDAHGAPIM 72
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
IAAEKAG+TP+EF+ I++ RK+YLDGF+I FDNW+STD EN +L + IY L A
Sbjct: 73 IAAEKAGITPQEFVAQIAAGRKQYLDGFHIAFDNWHSTDGPENHELSRDIYRKL-KAAGF 131
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I K I QF+DP+KN+FLPDRYIKGECP C AKDQYGD CE CSS+Y PT LINPYS L+
Sbjct: 132 IATKTIEQFYDPVKNMFLPDRYIKGECPKCGAKDQYGDSCEVCSSVYAPTDLINPYSTLT 191
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK----RLQPEIVNKIKEWLEKDNKFNDW 247
G P++KSS+HFFFKLSD +C++FLR WA+ + RLQ E+ NK KEWLE D DW
Sbjct: 192 GATPVMKSSEHFFFKLSDPQCVEFLRGWALGNADGKPRLQSEVANKAKEWLESDGGMGDW 251
Query: 248 DISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISS 307
DISRDAPYFGI+IP+ KYFYVWLDAP+GYLASLKN+F K G R++D F++
Sbjct: 252 DISRDAPYFGIEIPDEPGKYFYVWLDAPVGYLASLKNYFGKTG--------RDYDAFMAD 303
Query: 308 PNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPL 367
P TEQYHFIGKDI YFH LFWPA+L FSG+K+PNN+FVHGF+T++G+KMSKS GISPL
Sbjct: 304 PRTEQYHFIGKDITYFHTLFWPAMLHFSGQKVPNNVFVHGFLTVSGEKMSKSRGTGISPL 363
Query: 368 YYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKY 427
YL++GMNPEW+RYYIA+KL+ K+EDIDFN + F++ VNSDLIGKYINIASR++ FI K
Sbjct: 364 RYLELGMNPEWMRYYIAAKLSAKVEDIDFNPEDFVARVNSDLIGKYINIASRAAGFIAKK 423
Query: 428 FKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487
F G L+ W D+D FL++LR V++ IQ Y+ R + K L V+EQ + IN + D NKPW
Sbjct: 424 FDGKLSTAWATDSDPFLARLRGVAADIQALYDGREYGKALRAVMEQADLINAYVDANKPW 483
Query: 488 KLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLT 547
+LAK+ LH++ SRLLEAFRILTIYLKP+LP LA VE FL I PL W ++ PL
Sbjct: 484 ELAKDPSKEAALHEVCSRLLEAFRILTIYLKPVLPALAAEVENFLQIQPLAWADVGQPLA 543
Query: 548 QNHKINKYRHLMTRVDKNIVDNL 570
HKIN Y HLMTRV+ ++D L
Sbjct: 544 DGHKINVYTHLMTRVEPKMLDAL 566
|
Source: Collimonas fungivorans Ter331 Species: Collimonas fungivorans Genus: Collimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|329915423|ref|ZP_08276269.1| Methionyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] gi|327544901|gb|EGF30259.1| Methionyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/565 (60%), Positives = 431/565 (76%), Gaps = 17/565 (3%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R++FVTTALPYAN HIGHIMEYIQADIWVRFQ MQ +V+F+CADDAHGA IM
Sbjct: 42 RQLFVTTALPYANAAFHIGHIMEYIQADIWVRFQRMQ-----GHEVHFVCADDAHGAPIM 96
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
IAA+ AG+TP+EF+ I++ R+ LDGF+I FDNW+STD EN L ++IY +L + A+L
Sbjct: 97 IAADNAGVTPQEFVARIAAGRQAPLDGFHIGFDNWHSTDGEENHALSKEIYRSLRDNAQL 156
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I K I QFFDP+KN+FL DRYIKGECP C AKDQYGD CE C ++Y PT+L NPYS LS
Sbjct: 157 ITTKTIEQFFDPVKNMFLADRYIKGECPKCGAKDQYGDSCEVCGAVYAPTELKNPYSALS 216
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLE----KDNKFNDW 247
G P++KSS+HFFFKLSD +C++FLR+WA + RLQPE+ NK +EWLE K++ DW
Sbjct: 217 GAVPVMKSSEHFFFKLSDHKCVEFLREWAFTEGRLQPEVANKAREWLEGKDDKESGLGDW 276
Query: 248 DISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISS 307
DISRDAPYFGI+IP+ KYFYVWLDAPIGYLASLKN+F+ G R+FD F+++
Sbjct: 277 DISRDAPYFGIEIPDAPGKYFYVWLDAPIGYLASLKNYFDNTG--------RDFDAFMAN 328
Query: 308 PNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPL 367
P TEQYHFIGKDI YFH LFWPA+L F+GRK+PNN+FVHGF+T++G+KMSKS GISPL
Sbjct: 329 PATEQYHFIGKDITYFHTLFWPAMLHFAGRKVPNNVFVHGFITVSGEKMSKSRGTGISPL 388
Query: 368 YYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKY 427
YL IGMNPEW+RYYIA+KL+ K+ED+DFN F++ VNSDLIGKY+NIASRS+ FI K
Sbjct: 389 RYLDIGMNPEWMRYYIAAKLSAKVEDVDFNPDDFVARVNSDLIGKYVNIASRSAGFIAKR 448
Query: 428 FKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487
F G++ W +DTFL LR V++ I Y+ R + K L +++EQ + +N + D NKPW
Sbjct: 449 FDGHVVTDWATTSDTFLFGLRDVANDIHALYDGREYGKALRLIMEQADRVNAYVDANKPW 508
Query: 488 KLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLT 547
+LAKN +L ++ SRLLEAFRILT+YLKP+LP LA+ VET L I+PLQW ++ PL
Sbjct: 509 ELAKNPDNDARLQEVCSRLLEAFRILTLYLKPVLPALAQQVETMLAIAPLQWSDVSKPLP 568
Query: 548 QNHKINKYRHLMTRVDKNIVDNLLK 572
H+IN + HLM RVD ++D L +
Sbjct: 569 HQHQINPFVHLMQRVDPKMLDALFE 593
|
Source: Oxalobacteraceae bacterium IMCC9480 Species: Oxalobacteraceae bacterium IMCC9480 Genus: Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|415943372|ref|ZP_11556052.1| Methionyl-tRNA synthetase [Herbaspirillum frisingense GSF30] gi|407758708|gb|EKF68496.1| Methionyl-tRNA synthetase [Herbaspirillum frisingense GSF30] | Back alignment and taxonomy information |
|---|
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/539 (61%), Positives = 412/539 (76%), Gaps = 13/539 (2%)
Query: 33 MEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92
MEYIQADIWVRFQ MQ +V+F+ ADDAHGA IMIAAEKAG+TP++F+ NI++ R
Sbjct: 1 MEYIQADIWVRFQRMQ-----GNEVHFVGADDAHGAPIMIAAEKAGITPQQFVANIAAGR 55
Query: 93 KKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDR 152
K+YLDGF+I FDNW STDS EN +L Q+IY L ++A+LI K I+QF+DP+KN+FLPDR
Sbjct: 56 KQYLDGFHIAFDNWSSTDSPENHELSQEIYRALRDQAQLISTKTIDQFYDPVKNMFLPDR 115
Query: 153 YIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRC 212
YIKGECP C KDQYGD CE CS++Y PT L NPYS LSG P++KSS+HFFF+LSD +C
Sbjct: 116 YIKGECPKCGTKDQYGDSCENCSAVYAPTDLKNPYSTLSGATPVMKSSEHFFFRLSDPKC 175
Query: 213 IDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWL 272
++FLR+WA+ RLQPE+ NK +EWL+ + DWDISRDAPYFGI+IP+ KYFYVWL
Sbjct: 176 VEFLREWALDSNRLQPEVANKAREWLDGEGGLGDWDISRDAPYFGIEIPDAPGKYFYVWL 235
Query: 273 DAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAIL 332
DAPIGYLASLKN+F K G R+FD F++ TEQYHFIGKDI YFH LFWPA+L
Sbjct: 236 DAPIGYLASLKNYFVKTG--------RDFDAFMADDKTEQYHFIGKDITYFHTLFWPAML 287
Query: 333 KFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIE 392
KF+GRK PNN+F HGF+T++G+KMSKS GISPL YL IGMNPEWLRYYIA+KLN K+E
Sbjct: 288 KFAGRKTPNNVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEWLRYYIAAKLNAKVE 347
Query: 393 DIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSS 452
D+DFN F++ VN+DLIGKY+NIASR++ FI K F+G ++ +W +D FL KLR V+
Sbjct: 348 DVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFEGRVSTQWATADDAFLGKLRGVAD 407
Query: 453 SIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRI 512
I+ YE R + K L +V+EQ + IN + D NKPW+LAK++ +LH++ SRLLEAFRI
Sbjct: 408 EIRSLYEQREYGKALRLVMEQADAINAYVDANKPWELAKDSSKDAQLHEVCSRLLEAFRI 467
Query: 513 LTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHKINKYRHLMTRVDKNIVDNLL 571
LTIYLKP+LP LA VE F + P QW ++ TPL H IN Y HLM RVD ++D L
Sbjct: 468 LTIYLKPVLPQLAAQVEAFFKVQPFQWSDVTTPLADGHVINAYSHLMQRVDPKMLDALF 526
|
Source: Herbaspirillum frisingense GSF30 Species: Herbaspirillum frisingense Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|237746649|ref|ZP_04577129.1| methionyl-tRNA synthetase [Oxalobacter formigenes HOxBLS] gi|229378000|gb|EEO28091.1| methionyl-tRNA synthetase [Oxalobacter formigenes HOxBLS] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/567 (58%), Positives = 422/567 (74%), Gaps = 17/567 (2%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R++FVTTALPYAN HIGHIMEYIQADIWVRFQ MQQDNGK R+V+F+ ADD HGA IM
Sbjct: 3 RKLFVTTALPYANAPFHIGHIMEYIQADIWVRFQRMQQDNGKQREVHFVGADDVHGAPIM 62
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
IAAEKAG TP+EF+ I++ R L+GF I FDNW+STD EN +L ++IY L K L
Sbjct: 63 IAAEKAGKTPQEFVAEIAAGRAAPLNGFLISFDNWHSTDGSENYELSREIYRRLKAKG-L 121
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I +K I QFFDP+K +FLPDRYIKGECP C AKDQYGD CE CSS+YTPT+L NPYSIL+
Sbjct: 122 IESKTIEQFFDPVKEMFLPDRYIKGECPKCGAKDQYGDTCESCSSVYTPTELKNPYSILT 181
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIH----DKRLQPEIVNKIKEWLE----KDNK 243
G P++K S+HFFFKLSD +C FL++W + + RLQPE+ NK +EWLE ++N
Sbjct: 182 GATPVMKQSEHFFFKLSDPQCTAFLKEWTLGNVDGEPRLQPEVANKAREWLEGKEGEENA 241
Query: 244 FNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDE 303
+DWDISRDAPYFGI+IP+ KYFYVWLDAP+GYLASLKN+F K G ++D
Sbjct: 242 LSDWDISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKNYFNKTG--------GDYDA 293
Query: 304 FISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIG 363
F++ P TEQYHFIGKDI YFH LFWPA+L F+ ++P+N++VHGF+T+ G+KMSKS G
Sbjct: 294 FMADPETEQYHFIGKDIIYFHTLFWPAMLHFADMRVPDNVYVHGFITVGGEKMSKSRGTG 353
Query: 364 ISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSF 423
ISPL YL+IGMNPEWLRYY+A+KL++++EDIDF FI+ VN+DL+GKY+NIASR++ F
Sbjct: 354 ISPLRYLEIGMNPEWLRYYLAAKLSDRVEDIDFTGDDFIARVNADLVGKYVNIASRAAGF 413
Query: 424 IEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQ 483
I K F G L W ++ L LR S I + YE R F K L ++ + +N + D
Sbjct: 414 ITKRFGGKLAKDWKTEDTPVLDTLRAASGEIAELYEKREFGKALRQIMHLADEVNAYVDA 473
Query: 484 NKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIF 543
NKPW LAK+ E LH++ +RLLEAFRIL+IYLKP+LP +++ VE FLN+ PLQW ++
Sbjct: 474 NKPWVLAKDPEKSEALHQVCTRLLEAFRILSIYLKPVLPAVSEKVEAFLNLPPLQWSDVE 533
Query: 544 TPLTQNHKINKYRHLMTRVDKNIVDNL 570
PL +H IN Y HLM RVD+ ++D L
Sbjct: 534 KPLEDSHAINPYEHLMQRVDQKMLDAL 560
|
Source: Oxalobacter formigenes HOxBLS Species: Oxalobacter formigenes Genus: Oxalobacter Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|409406809|ref|ZP_11255271.1| methionyl-tRNA synthetase [Herbaspirillum sp. GW103] gi|386435358|gb|EIJ48183.1| methionyl-tRNA synthetase [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/538 (61%), Positives = 411/538 (76%), Gaps = 13/538 (2%)
Query: 33 MEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92
MEYIQADIWVRFQ MQ +V+F+ ADDAHGA IMIAAEKAG+TP++F+ NI++ R
Sbjct: 1 MEYIQADIWVRFQRMQ-----GNEVHFVGADDAHGAPIMIAAEKAGITPQQFVANIAAGR 55
Query: 93 KKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDR 152
K+YLDGF+I FDNW STDS EN +L Q+IY L ++AKLI K I+QF+DP+KN+FLPDR
Sbjct: 56 KQYLDGFHIAFDNWSSTDSPENHELSQEIYRALRDEAKLISTKTIDQFYDPVKNMFLPDR 115
Query: 153 YIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRC 212
YIKGECP C KDQYGD CE CS++Y+PT L NPYS LSG P++KSS+HFFFKLSD +C
Sbjct: 116 YIKGECPKCGTKDQYGDSCENCSAVYSPTDLKNPYSTLSGATPVMKSSEHFFFKLSDPKC 175
Query: 213 IDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWL 272
+ FLR+WA+ RLQPE+ NK +EWL+ + DWDISRDAPYFGI+IP+ KYFYVWL
Sbjct: 176 VAFLREWALDSNRLQPEVANKAREWLDGEGGLGDWDISRDAPYFGIEIPDAPGKYFYVWL 235
Query: 273 DAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAIL 332
DAPIGYLASLKN+F K G R+FD F++ TEQYHFIGKDI YFH LFWPA+L
Sbjct: 236 DAPIGYLASLKNYFVKTG--------RDFDAFMADDKTEQYHFIGKDITYFHTLFWPAML 287
Query: 333 KFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIE 392
KF+GRK P N+F HGF+T++G+KMSKS GISPL YL IGMNPEWLRYYIA+KLN K+E
Sbjct: 288 KFAGRKTPTNVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEWLRYYIAAKLNAKVE 347
Query: 393 DIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSS 452
D+DFN F++ VN+DLIGKY+NIASR++ FI K F G ++ +W +D FL+KLR V+
Sbjct: 348 DVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFDGRVSTQWATADDAFLAKLRGVAD 407
Query: 453 SIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRI 512
I+ YE R + K L +V+EQ + IN + D NKPW+LAK++ +LH++ SRLLEAFRI
Sbjct: 408 EIRSLYEQREYGKALRLVMEQADAINAYVDANKPWELAKDSSKDAQLHEVCSRLLEAFRI 467
Query: 513 LTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHKINKYRHLMTRVDKNIVDNL 570
LTIYLKP+LP LA VE FL + P QW ++ PL H I+ Y HLM RVD ++D L
Sbjct: 468 LTIYLKPVLPQLAAQVEAFLQVQPFQWNDVAAPLADGHVIHAYSHLMQRVDPKMLDAL 525
|
Source: Herbaspirillum sp. GW103 Species: Herbaspirillum sp. GW103 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134094215|ref|YP_001099290.1| methionyl-tRNA synthetase [Herminiimonas arsenicoxydans] gi|187647726|sp|A4G3S6.1|SYM_HERAR RecName: Full=Methionine--tRNA ligase; AltName: Full=Methionyl-tRNA synthetase; Short=MetRS gi|133738118|emb|CAL61163.1| methionine tRNA synthetase (Methionine--tRNA ligase) (MetRS) [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/573 (59%), Positives = 417/573 (72%), Gaps = 28/573 (4%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R++FVTTALPYANG HIGHIMEYIQADIWVRFQ MQ QV F+ ADDAHGA IM
Sbjct: 7 RKLFVTTALPYANGAFHIGHIMEYIQADIWVRFQRMQ-----GNQVDFVGADDAHGAPIM 61
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
IAAEKAG+TP++F++NI++ RK+YLDGF+I FDNW STDS EN L Q+IY L KA L
Sbjct: 62 IAAEKAGLTPQQFVSNIAAGRKQYLDGFHIAFDNWSSTDSPENHQLAQQIYLDL-KKAGL 120
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I +K + QFFDP KN+FLPDRYIKGECP C+ KDQYGD CE C+++Y+PT LINPYS L+
Sbjct: 121 IASKTVEQFFDPEKNMFLPDRYIKGECPKCHTKDQYGDNCEVCAAVYSPTDLINPYSALT 180
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIH-----DKRLQPEIVNKIKEWLEK------ 240
G P++K S+HFFF LSD RC+ FL +W LQ E+ NK+KEW
Sbjct: 181 GATPVLKHSEHFFFTLSDPRCVAFLEEWVSGLDTDGKTHLQAEVANKVKEWFSARTNPDG 240
Query: 241 --DNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNEL 298
NDWDISRDAPYFGI+IP+ KYFYVWLDAP+GYLASLKN +K G
Sbjct: 241 TISEGLNDWDISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKNLLDKRG-------- 292
Query: 299 RNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTIN-GKKMS 357
NFD +++ P EQ HFIGKDI FH LFWPA+LKFSGRK PN +FVHGF+T+N G+KMS
Sbjct: 293 ENFDAYMAEPALEQIHFIGKDIVNFHTLFWPAMLKFSGRKTPNKVFVHGFLTVNNGEKMS 352
Query: 358 KSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIA 417
KS G+ PL YL +GMNPEWLRYY+A+KL+ + EDIDFN + FI+ VNSDLIGKY+NIA
Sbjct: 353 KSRGTGLDPLKYLSLGMNPEWLRYYLANKLSARNEDIDFNPEDFIARVNSDLIGKYVNIA 412
Query: 418 SRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFI 477
SR++ FI K F G + W +D F+SKLR V+S IQ Y+ R + K L ++EQ + I
Sbjct: 413 SRAAGFIAKKFDGRVVSDWATADDVFISKLRNVASEIQALYDQREYGKALRTIMEQADAI 472
Query: 478 NIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPL 537
N + D NKPW+LAK L ++ SRLLEAFRILTIYLKP+LP LAK VE LNI+PL
Sbjct: 473 NAYVDANKPWELAKKPENSAALQEVCSRLLEAFRILTIYLKPVLPELAKQVEALLNIAPL 532
Query: 538 QWINIFTPLTQNHKINKYRHLMTRVDKNIVDNL 570
QW ++ TPL NH++N Y HLMTRV+ ++D L
Sbjct: 533 QWSDVGTPLPHNHQVNPYSHLMTRVEPKMLDAL 565
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 576 | ||||||
| TIGR_CMR|CBU_1695 | 546 | CBU_1695 "methionyl-tRNA synth | 0.918 | 0.968 | 0.485 | 1.1e-135 | |
| TIGR_CMR|CPS_2839 | 713 | CPS_2839 "methionyl-tRNA synth | 0.927 | 0.748 | 0.448 | 3.7e-126 | |
| UNIPROTKB|Q9KT69 | 683 | metG "Methionine--tRNA ligase" | 0.939 | 0.792 | 0.438 | 1.6e-125 | |
| TIGR_CMR|VC_1036 | 683 | VC_1036 "methionyl-tRNA synthe | 0.939 | 0.792 | 0.438 | 1.6e-125 | |
| UNIPROTKB|P00959 | 677 | metG "methionyl-tRNA synthetas | 0.932 | 0.793 | 0.429 | 5.1e-122 | |
| TIGR_CMR|SO_2619 | 676 | SO_2619 "methionyl-tRNA synthe | 0.875 | 0.745 | 0.450 | 3.6e-121 | |
| CGD|CAL0003012 | 748 | MES1 [Candida albicans (taxid: | 0.937 | 0.721 | 0.264 | 7.5e-50 | |
| UNIPROTKB|Q5AK65 | 748 | MES1 "Potential cytoplasmic me | 0.937 | 0.721 | 0.264 | 7.5e-50 | |
| SGD|S000003496 | 751 | MES1 "Methionyl-tRNA synthetas | 0.937 | 0.719 | 0.264 | 1.5e-48 | |
| DICTYBASE|DDB_G0279113 | 736 | metS "methionyl-tRNA synthetas | 0.921 | 0.721 | 0.271 | 3.5e-48 |
| TIGR_CMR|CBU_1695 CBU_1695 "methionyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 1329 (472.9 bits), Expect = 1.1e-135, P = 1.1e-135
Identities = 268/552 (48%), Positives = 358/552 (64%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R+I VT ALPYANG +H+GH++E+IQADIWVRFQ + K FIC +DAHG AIM
Sbjct: 6 RQILVTAALPYANGPIHLGHMVEHIQADIWVRFQRL-----KGNDCLFICGEDAHGTAIM 60
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXX 131
I A+K G+ P+ + + + L GF I++DN+Y+T S EN +L + IY L
Sbjct: 61 ITAQKQGLPPEALVAKMHKEHARDLGGFLIEYDNFYTTHSPENRELAELIYTRL-KDKGD 119
Query: 132 XXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
Q +DP+K IFLPDR+I+G CP C AKDQYGD CE C + Y+PT+LI+P S LS
Sbjct: 120 IFAKTISQAYDPVKEIFLPDRFIRGTCPRCGAKDQYGDVCEVCGATYSPTELIDPVSALS 179
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G KPI K+S+HFFF L+ R L+KW I LQP++ NK+KEW +D K WDISR
Sbjct: 180 GAKPIEKNSEHFFFSLN--RYTQLLKKW-IDAGHLQPQVANKLKEWFSEDLK--PWDISR 234
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPN-T 310
DAPYFG +IP+ KYFYVWLDAPIGY+ASLKN K P NFD + + T
Sbjct: 235 DAPYFGFEIPHAANKYFYVWLDAPIGYMASLKNL-SKQRPSV------NFDAYWKEGSQT 287
Query: 311 EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYL 370
E YHF+GKDI YFH LFWPA+L +G +LP I+VHG++T+NG+KMSKS I+ +YL
Sbjct: 288 ELYHFVGKDIVYFHALFWPAMLSGAGFRLPTTIYVHGYLTVNGQKMSKSRGTFITAHHYL 347
Query: 371 KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKG 430
++PE+LRYY A+KL+ ++EDID N FI VN+DLIGKY+N+ASR + FI K F G
Sbjct: 348 D-HLSPEYLRYYYAAKLSAQVEDIDLNLDDFIQRVNADLIGKYVNLASRCAGFITKNFGG 406
Query: 431 YLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLA 490
L + + + D + S L+ +I YYE+ N++K + +++ + N + D KPW LA
Sbjct: 407 KLANE-LPEPDLYESFLQT-EQTITDYYESLNYSKAVRVIMSLADRANQYIDAKKPWALA 464
Query: 491 KNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNH 550
K ++ + ++ L F+ILT YLKPILP AK VE FLN L + N+ TPL +H
Sbjct: 465 KEINQEAQVQAVCTQGLNLFKILTTYLKPILPVTAKKVEQFLNCDELNFANLKTPLL-DH 523
Query: 551 KINKYRHLMTRV 562
+N + LM R+
Sbjct: 524 SVNPFEPLMQRL 535
|
|
| TIGR_CMR|CPS_2839 CPS_2839 "methionyl-tRNA synthetase, beta subunit" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1239 (441.2 bits), Expect = 3.7e-126, P = 3.7e-126
Identities = 250/558 (44%), Positives = 350/558 (62%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R+I VT ALPYANG +H+GH++E+IQ DIWVRFQ M + + YF+CADDAHG IM
Sbjct: 22 RKILVTCALPYANGSIHLGHMLEHIQTDIWVRFQRM-----RGHETYFVCADDAHGTPIM 76
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXX 131
+ A++ G+TP+E IN + R K F+I FDN+++T S EN + +KIY+ L+
Sbjct: 77 LKAQELGITPEEMINGVREERIKEFSDFHISFDNYHTTHSDENKEYSEKIYNALHAKGHI 136
Query: 132 XXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
Q +DP K +FL DR++KG CP C ++D+ GD C+ C + Y+PT+++NP S +S
Sbjct: 137 KTRIIS-QLYDPEKGMFLADRFVKGTCPKCKSEDENGDSCDNCGATYSPTEVLNPRSAIS 195
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G PI+K S+H+FF L + L W I LQ E+ NK+ EW E+ K WDISR
Sbjct: 196 GATPILKDSEHYFFDLPAFETM--LSDW-IRSGALQEEVANKLTEWFEQGLK--QWDISR 250
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFIS-SPNT 310
DAPYFG +IPN K+FYVWLDAPIGY+ S KN +K + +FD F + + +
Sbjct: 251 DAPYFGFEIPNAPGKFFYVWLDAPIGYMGSFKNLCDK-------DSTIDFDSFWNKNSDA 303
Query: 311 EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYL 370
E YHFIGKDI FH LFWPA+L+ + + P +F HGF+T+NG+KMSKS I YL
Sbjct: 304 ELYHFIGKDIINFHSLFWPAMLEGADFRKPTAVFAHGFVTVNGEKMSKSKGTFIKGRTYL 363
Query: 371 KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKG 430
+NPE+LRYY A+KL +KI+D+D N + F+ VNSDL+GK +NIASR +SFI K F G
Sbjct: 364 D-HLNPEYLRYYYATKLTHKIDDLDLNLEDFVQRVNSDLVGKVVNIASRCASFITKRFDG 422
Query: 431 YLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLA 490
L+ D+ ++ SI +YE+R+F + + ++ + +N + +PW+L
Sbjct: 423 MLSTNI--DDQALADEVMAAGDSIAAHYESRDFGRGMREIMALADKVNEYIAIKEPWQLV 480
Query: 491 KNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNH 550
K+ +++ I S + FR L IYLKP+LP LA S FLN L W T LT +H
Sbjct: 481 KDETKQQEVQDICSLGINMFRTLMIYLKPVLPVLADSTAAFLN-DELVWEGHKTLLT-DH 538
Query: 551 KINKYRHLMTRVDKNIVD 568
KINK++ L+ RVD + V+
Sbjct: 539 KINKFKALLQRVDMDKVN 556
|
|
| UNIPROTKB|Q9KT69 metG "Methionine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
Identities = 247/563 (43%), Positives = 344/563 (61%)
Query: 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAA 69
D R++ VT ALPYANG +H+GH++E+IQADIWVR+Q ++ G + V FICADDAHG
Sbjct: 4 DPRKLLVTCALPYANGSIHLGHMLEHIQADIWVRYQRLR---GNT--VNFICADDAHGTP 58
Query: 70 IMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXX 129
IM+ A++ GMTP+ I +S ++ GF I FDN++ST S EN +L IY L
Sbjct: 59 IMLKAQQMGMTPEAMIEMVSEEHQRDFAGFDISFDNYHSTHSDENRELASHIYLQL-KKN 117
Query: 130 XXXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSI 189
Q FDP K +FLPDR++KG CP C ++DQYGD C+ C Y+PT+LINP S
Sbjct: 118 GFISSRTISQLFDPEKEMFLPDRFVKGTCPKCKSEDQYGDNCDACGETYSPTELINPKSA 177
Query: 190 LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDI 249
+SG P++K S+HFFF L + L++W LQ E NK++EW E WDI
Sbjct: 178 VSGATPVMKDSEHFFFDLPQFESM--LKEWT-RSGSLQSETANKMQEWFE--GGLQQWDI 232
Query: 250 SRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPN 309
SRDAPYFG +IP +K+FYVWLDAPIGY+ S KN +K G +NE N D
Sbjct: 233 SRDAPYFGFEIPGEKDKFFYVWLDAPIGYMGSFKNLCDKRGDLD-FNEYWNKDS-----K 286
Query: 310 TEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYY 369
TE YHFIGKDI YFH LFWPA+L SG + P N+FVHG++T+NG KMSKS + Y
Sbjct: 287 TELYHFIGKDIVYFHSLFWPAMLDGSGFRKPTNVFVHGYVTVNGAKMSKSKGTFVKASTY 346
Query: 370 LKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK 429
L ++PE LRYY A+KLNN+I+D+D N + F VN+D++ K +N+ASR++ FI K F
Sbjct: 347 LN-HLDPECLRYYYAAKLNNRIDDLDLNLEDFTQRVNADVVNKIVNLASRNAGFITKRFD 405
Query: 430 GYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKL 489
G L+ + + ++ + I + +E R F + + + + N + D+ PW +
Sbjct: 406 GKLSAHFAEPE--LYAEFAGAADRIAELFEAREFGRAIREITALADKANQYVDEKAPWVV 463
Query: 490 AKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQN 549
AK + L I + + FR+L YLKP++P LA+ E FLN L W + TPLT +
Sbjct: 464 AKQEGQDQALQDICTVGINLFRVLMTYLKPVMPALAERTEAFLN-QELTWEGVATPLT-D 521
Query: 550 HKINKYRHLMTRVDKNIVDNLLK 572
H + ++ L R+D V+ +++
Sbjct: 522 HAVTPFKALFNRIDPKQVEAMIE 544
|
|
| TIGR_CMR|VC_1036 VC_1036 "methionyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
Identities = 247/563 (43%), Positives = 344/563 (61%)
Query: 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAA 69
D R++ VT ALPYANG +H+GH++E+IQADIWVR+Q ++ G + V FICADDAHG
Sbjct: 4 DPRKLLVTCALPYANGSIHLGHMLEHIQADIWVRYQRLR---GNT--VNFICADDAHGTP 58
Query: 70 IMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXX 129
IM+ A++ GMTP+ I +S ++ GF I FDN++ST S EN +L IY L
Sbjct: 59 IMLKAQQMGMTPEAMIEMVSEEHQRDFAGFDISFDNYHSTHSDENRELASHIYLQL-KKN 117
Query: 130 XXXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSI 189
Q FDP K +FLPDR++KG CP C ++DQYGD C+ C Y+PT+LINP S
Sbjct: 118 GFISSRTISQLFDPEKEMFLPDRFVKGTCPKCKSEDQYGDNCDACGETYSPTELINPKSA 177
Query: 190 LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDI 249
+SG P++K S+HFFF L + L++W LQ E NK++EW E WDI
Sbjct: 178 VSGATPVMKDSEHFFFDLPQFESM--LKEWT-RSGSLQSETANKMQEWFE--GGLQQWDI 232
Query: 250 SRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPN 309
SRDAPYFG +IP +K+FYVWLDAPIGY+ S KN +K G +NE N D
Sbjct: 233 SRDAPYFGFEIPGEKDKFFYVWLDAPIGYMGSFKNLCDKRGDLD-FNEYWNKDS-----K 286
Query: 310 TEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYY 369
TE YHFIGKDI YFH LFWPA+L SG + P N+FVHG++T+NG KMSKS + Y
Sbjct: 287 TELYHFIGKDIVYFHSLFWPAMLDGSGFRKPTNVFVHGYVTVNGAKMSKSKGTFVKASTY 346
Query: 370 LKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK 429
L ++PE LRYY A+KLNN+I+D+D N + F VN+D++ K +N+ASR++ FI K F
Sbjct: 347 LN-HLDPECLRYYYAAKLNNRIDDLDLNLEDFTQRVNADVVNKIVNLASRNAGFITKRFD 405
Query: 430 GYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKL 489
G L+ + + ++ + I + +E R F + + + + N + D+ PW +
Sbjct: 406 GKLSAHFAEPE--LYAEFAGAADRIAELFEAREFGRAIREITALADKANQYVDEKAPWVV 463
Query: 490 AKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQN 549
AK + L I + + FR+L YLKP++P LA+ E FLN L W + TPLT +
Sbjct: 464 AKQEGQDQALQDICTVGINLFRVLMTYLKPVMPALAERTEAFLN-QELTWEGVATPLT-D 521
Query: 550 HKINKYRHLMTRVDKNIVDNLLK 572
H + ++ L R+D V+ +++
Sbjct: 522 HAVTPFKALFNRIDPKQVEAMIE 544
|
|
| UNIPROTKB|P00959 metG "methionyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
Identities = 242/564 (42%), Positives = 340/564 (60%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
++I VT ALPYANG +H+GH++E+IQAD+WVR+Q M + +V FICADDAHG IM
Sbjct: 6 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRM-----RGHEVNFICADDAHGTPIM 60
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXX 131
+ A++ G+TP++ I +S + GF I +DN++ST S EN L + IY L
Sbjct: 61 LKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRL-KENGF 119
Query: 132 XXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
Q +DP K +FLPDR++KG CP C + DQYGD CE C + Y+PT+LI P S++S
Sbjct: 120 IKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVS 179
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G P+++ S+HFFF L + L+ W LQ ++ NK++EW E WDISR
Sbjct: 180 GATPVMRDSEHFFFDLPSFS--EMLQAWT-RSGALQEQVANKMQEWFESG--LQQWDISR 234
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNT- 310
DAPYFG +IPN KYFYVWLDAPIGY+ S KN +K G +FDE+ +T
Sbjct: 235 DAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSV------SFDEYWKKDSTA 288
Query: 311 EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYL 370
E YHFIGKDI YFH LFWPA+L+ S + P+N+FVHG++T+NG KMSKS I +L
Sbjct: 289 ELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWL 348
Query: 371 KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKG 430
+ + LRYY +KL+++I+DID N + F+ VN+D++ K +N+ASR++ FI K F G
Sbjct: 349 N-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDG 407
Query: 431 YLNMKWVKDN--DTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWK 488
L + TF V+ + +E+R F K + ++ + N + D+ PW
Sbjct: 408 VLASELADPQLYKTFTDAAEVIGEA----WESREFGKAVREIMALADLANRYVDEQAPWV 463
Query: 489 LAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQ 548
+AK L I S + FR+L YLKP+LP L + E FLN + L W I PL
Sbjct: 464 VAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN-TELTWDGIQQPLL- 521
Query: 549 NHKINKYRHLMTRVDKNIVDNLLK 572
HK+N ++ L R+D V+ L++
Sbjct: 522 GHKVNPFKALYNRIDMRQVEALVE 545
|
|
| TIGR_CMR|SO_2619 SO_2619 "methionyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
Identities = 239/530 (45%), Positives = 331/530 (62%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R+I VT+ALPYANG +H+GH++EYIQ DIW R+Q + + + ++ICADDAHG IM
Sbjct: 6 RKILVTSALPYANGPIHLGHMLEYIQTDIWSRYQKL-----RGHECHYICADDAHGTPIM 60
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXXX 131
+ A++ GM P+E I ++ ++ F I FDN++ST S EN L IY L
Sbjct: 61 LKAQQLGMAPEEMIAQVNKEHQQDFADFNIAFDNYHSTHSEENRVLASDIYLKL-RANGY 119
Query: 132 XXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
Q FDP +++FLPDR++KG CP C + DQYGD C+ C + Y+PT+LINP S +S
Sbjct: 120 IKSKSISQLFDPEQSMFLPDRFVKGTCPKCKSPDQYGDNCDACGATYSPTELINPKSAVS 179
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G P++K ++HFFF L D L++W LQ E+ NK+ EW E+ WDI+R
Sbjct: 180 GATPVMKDTEHFFFDLPAFE--DMLKEWT-RSGALQTEMANKLDEWFEQG--LQQWDITR 234
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPN-T 310
DAPYFG +IP+ KYFYVWLDAPIGY+ S KN +K P EL +FDEF + +
Sbjct: 235 DAPYFGFEIPDAPGKYFYVWLDAPIGYMGSFKNLCDKR-P-----EL-SFDEFWAKDSKA 287
Query: 311 EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYL 370
E YHFIGKDI YFH LFWPA+L SG + PN+++ HG++T+NG KMSKS I YL
Sbjct: 288 EVYHFIGKDIVYFHSLFWPAMLYGSGYRQPNSVYAHGYVTVNGAKMSKSKGTFIKARTYL 347
Query: 371 KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKG 430
++PE+LRYY A+KL+++I+D+D N + F VNSDL+GK +N+ASR++ FI K F G
Sbjct: 348 D-HLDPEYLRYYYAAKLSSRIDDLDLNLEDFAQRVNSDLVGKLVNLASRTAGFITKRFDG 406
Query: 431 YLNMKWVKDNDTFLSKLRVVSSS-IQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKL 489
K K DT L+++ + I ++YE R + K + ++ + N F PW++
Sbjct: 407 ----KLAKITDTTLTEVFLAKQEQIAEFYETREYGKAMREIMALADIANGFVADAAPWQM 462
Query: 490 AKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQW 539
K++ E H++ S L FRIL YLKP+LP LA+ VE F L W
Sbjct: 463 VKHDDQQEAAHQVCSNALNLFRILVTYLKPVLPRLAQDVEAFFQ-QTLTW 511
|
|
| CGD|CAL0003012 MES1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 7.5e-50, P = 7.5e-50
Identities = 153/579 (26%), Positives = 266/579 (45%)
Query: 10 DVRRIFVTTALPYANGELHIGHIM-EYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGA 68
D R I +T+ALPY N H+G+I+ + ADI+ R+ ++ FIC D +G
Sbjct: 185 DERNILITSALPYVNNVPHLGNIIGSVLSADIYSRYA-----KNRNYNTLFICGTDEYGT 239
Query: 69 AIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXX 128
A A + +TP++ + + K+ D F I FD + T + ++ Q I+ L+
Sbjct: 240 ATETKALEEKVTPQQLCDKYHAIHKEVYDWFDIGFDYFGRTTTSLQTEIAQDIFLKLHNK 299
Query: 129 XXXXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYS 188
+ + K+ FL DR+++G CP C+ +D GD C+ C ++ P +LINP
Sbjct: 300 GYLEEKTTEQLYCEHHKS-FLADRFVEGTCPKCDYEDARGDQCDKCGNLLDPLELINPRC 358
Query: 189 ILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRL---QPEIVNKIKEWLEKDNKFN 245
+ G P++K S H + KL+D + L++W + N W+++
Sbjct: 359 KVDGNTPVVKESTHIYLKLNDLE--EPLKEWVLDSSAKGAWSRNSKNITDSWIKRG--LE 414
Query: 246 DWDISRDAPYFGIKIP--NTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDE 303
I+RD +G +P K YVW DA IGY++ N+F K + ++ +
Sbjct: 415 PRCITRDL-IWGTPVPLKGYDNKVLYVWFDATIGYVSITANYF-------KDSNTDDYLK 466
Query: 304 FISSP-NTEQYHFIGKDIFYFHILFWPAILKFSGRKLP--NNIFVHGFMTINGKKMSKSN 360
+ +P N + Y F+GKD FH + +PA +G K +++ ++ K SKS
Sbjct: 467 WWKNPENVDLYQFMGKDNVPFHTVVFPASQIGTGDKWTKLHHLSTTEYLQYENGKFSKSR 526
Query: 361 KIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRS 420
+G+ + G++P RYY+AS + +D F+ F++ NS+L+ N +R
Sbjct: 527 GVGVFGNNAKETGVSPSVWRYYLASN-RPETQDAHFSWDEFVAKNNSELLANLGNFVNRI 585
Query: 421 SSFIEKYFKGYL---NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFI 477
F+ + G + + K + D D F + + + +S EN N K L + + ++
Sbjct: 586 VKFVIAKYNGVIPKFDTKNIPDYDKFENDINSLLASYIDNMENVNLRKGLELAMAISSRG 645
Query: 478 NIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIY---LKPILPNLAKSVETFLNI 534
N F NK N++Y + K + + A ++ + + P +P ++ LN
Sbjct: 646 NQFLQDNK----LDNSLYANQPAKSDAVVAVAINLVYLVSAIIYPFMPETTVKIDQILNA 701
Query: 535 SPLQWINIFT-PLTQNHKINKYRHLMTRVDKNIVDNLLK 572
L N F L H I K ++L TR+D +D K
Sbjct: 702 PALSITNKFELVLLPGHCIGKAQYLFTRIDDKKIDEWRK 740
|
|
| UNIPROTKB|Q5AK65 MES1 "Potential cytoplasmic methionyl tRNA synthetase" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 7.5e-50, P = 7.5e-50
Identities = 153/579 (26%), Positives = 266/579 (45%)
Query: 10 DVRRIFVTTALPYANGELHIGHIM-EYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGA 68
D R I +T+ALPY N H+G+I+ + ADI+ R+ ++ FIC D +G
Sbjct: 185 DERNILITSALPYVNNVPHLGNIIGSVLSADIYSRYA-----KNRNYNTLFICGTDEYGT 239
Query: 69 AIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXX 128
A A + +TP++ + + K+ D F I FD + T + ++ Q I+ L+
Sbjct: 240 ATETKALEEKVTPQQLCDKYHAIHKEVYDWFDIGFDYFGRTTTSLQTEIAQDIFLKLHNK 299
Query: 129 XXXXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYS 188
+ + K+ FL DR+++G CP C+ +D GD C+ C ++ P +LINP
Sbjct: 300 GYLEEKTTEQLYCEHHKS-FLADRFVEGTCPKCDYEDARGDQCDKCGNLLDPLELINPRC 358
Query: 189 ILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRL---QPEIVNKIKEWLEKDNKFN 245
+ G P++K S H + KL+D + L++W + N W+++
Sbjct: 359 KVDGNTPVVKESTHIYLKLNDLE--EPLKEWVLDSSAKGAWSRNSKNITDSWIKRG--LE 414
Query: 246 DWDISRDAPYFGIKIP--NTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDE 303
I+RD +G +P K YVW DA IGY++ N+F K + ++ +
Sbjct: 415 PRCITRDL-IWGTPVPLKGYDNKVLYVWFDATIGYVSITANYF-------KDSNTDDYLK 466
Query: 304 FISSP-NTEQYHFIGKDIFYFHILFWPAILKFSGRKLP--NNIFVHGFMTINGKKMSKSN 360
+ +P N + Y F+GKD FH + +PA +G K +++ ++ K SKS
Sbjct: 467 WWKNPENVDLYQFMGKDNVPFHTVVFPASQIGTGDKWTKLHHLSTTEYLQYENGKFSKSR 526
Query: 361 KIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRS 420
+G+ + G++P RYY+AS + +D F+ F++ NS+L+ N +R
Sbjct: 527 GVGVFGNNAKETGVSPSVWRYYLASN-RPETQDAHFSWDEFVAKNNSELLANLGNFVNRI 585
Query: 421 SSFIEKYFKGYL---NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFI 477
F+ + G + + K + D D F + + + +S EN N K L + + ++
Sbjct: 586 VKFVIAKYNGVIPKFDTKNIPDYDKFENDINSLLASYIDNMENVNLRKGLELAMAISSRG 645
Query: 478 NIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIY---LKPILPNLAKSVETFLNI 534
N F NK N++Y + K + + A ++ + + P +P ++ LN
Sbjct: 646 NQFLQDNK----LDNSLYANQPAKSDAVVAVAINLVYLVSAIIYPFMPETTVKIDQILNA 701
Query: 535 SPLQWINIFT-PLTQNHKINKYRHLMTRVDKNIVDNLLK 572
L N F L H I K ++L TR+D +D K
Sbjct: 702 PALSITNKFELVLLPGHCIGKAQYLFTRIDDKKIDEWRK 740
|
|
| SGD|S000003496 MES1 "Methionyl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
Identities = 155/587 (26%), Positives = 263/587 (44%)
Query: 1 MKKHDSEF---KDVRRIFVTTALPYANGELHIGHIM-EYIQADIWVRFQCMQQDNGKSRQ 56
+K DSE + R I +T+ALPY N H+G+I+ + ADI+ R+ C G++
Sbjct: 182 VKPKDSEILPKPNERNILITSALPYVNNVPHLGNIIGSVLSADIFARY-C----KGRNYN 236
Query: 57 VYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENID 116
FIC D +G A A + G+TP++ + F I FD + T + + +
Sbjct: 237 ALFICGTDEYGTATETKALEEGVTPRQLCDKYHKIHSDVYKWFQIGFDYFGRTTTDKQTE 296
Query: 117 LVQKIYDTLYXXXXXXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSS 176
+ Q I+ L Q + P+ N +L DRY++GECP C+ D GD C+ C +
Sbjct: 297 IAQHIFTKL-NSNGYLEEQSMKQLYCPVHNSYLADRYVEGECPKCHYDDARGDQCDKCGA 355
Query: 177 IYTPTKLINPYSILSGTKPIIKSSKHFFFKLS--DKRCIDFLRKWAIHDKRLQPEIVNKI 234
+ P +LINP L P K S H F L + + +++ K A +
Sbjct: 356 LLDPFELINPRCKLDDASPEPKYSDHIFLSLDKLESQISEWVEK-ASEEGNWSKNSKTIT 414
Query: 235 KEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKY----FYVWLDAPIGYLASLKNFFEKGG 290
+ WL KD I+RD + G +P LEKY YVW DA IGY++ N+
Sbjct: 415 QSWL-KDG-LKPRCITRDLVW-GTPVP--LEKYKDKVLYVWFDATIGYVSITSNY----- 464
Query: 291 PKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRK--LPNNIFVHGF 348
K++ + N E +S Y F+GKD FH + +P + + +++ +
Sbjct: 465 -TKEWKQWWNNPEHVSL-----YQFMGKDNVPFHTVVFPGSQLGTEENWTMLHHLNTTEY 518
Query: 349 MTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSD 408
+ K SKS +G+ G++P RYY+AS + + D F+ F++ NS+
Sbjct: 519 LQYENGKFSKSRGVGVFGNNAQDSGISPSVWRYYLAS-VRPESSDSHFSWDDFVARNNSE 577
Query: 409 LIGKYINIASRSSSFIEKYFKGYL---NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNK 465
L+ N +R F+ + G + + K V + D + + + S+ K E + +
Sbjct: 578 LLANLGNFVNRLIKFVNAKYNGVVPKFDPKKVSNYDGLVKDINEILSNYVKEMELGHERR 637
Query: 466 VLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRIL---TIYLKPILP 522
L I + + N F +NK N ++ + K + + I+ + + P +P
Sbjct: 638 GLEIAMSLSARGNQFLQENK----LDNTLFSQSPEKSDAVVAVGLNIIYAVSSIITPYMP 693
Query: 523 NLAKSVETFLNISPLQWINIF-TPLTQNHKINKYRHLMTRVDKNIVD 568
+ + + LN L+ + F + + H INK +L R+D+ +D
Sbjct: 694 EIGEKINKMLNAPALKIDDRFHLAILEGHNINKAEYLFQRIDEKKID 740
|
|
| DICTYBASE|DDB_G0279113 metS "methionyl-tRNA synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 3.5e-48, P = 3.5e-48
Identities = 157/578 (27%), Positives = 267/578 (46%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYI-QADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
R I +T+ALPY N H+G+I+ + AD++ R+ C K+ +IC D +G A
Sbjct: 16 RNILITSALPYVNNVPHLGNIIGCVLSADVYARY-CRL----KNYNCIYICGTDEYGTAT 70
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYXXXX 130
A G TPKE + K+ + F I FD + T + ++ Q I++ +
Sbjct: 71 ETKALSEGCTPKEICDKYHEIHKEIYEWFNISFDKFGRTSTNSQTEIAQDIFNKIKDNGY 130
Query: 131 XXXXXXXXQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
+ + +FL DR+++G CP C +D GD C+ CS + PT+LINP +
Sbjct: 131 TLTQEIEQLYCEQTCKMFLADRFVEGTCPHCKFEDARGDQCDGCSKLLNPTELINPRCKV 190
Query: 191 SGTKPIIKSSKHFFFKLSD-KRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDI 249
P+IKS+KH F L ++ +D + + W++ + K I
Sbjct: 191 CSKPPVIKSTKHIFIDLPQLQQQVDQFVETNSKGGNWSENSIAITNTWVKGELKPRC--I 248
Query: 250 SRDAPYFGIKIP--NTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISS 307
+RD + G +P +K FYVW DAPIGY++ + NE ++++ +
Sbjct: 249 TRDLKW-GTPVPMEEFKDKVFYVWFDAPIGYISITAEYT---------NE---WEKWWKN 295
Query: 308 P-NTEQYHFIGKDIFYFHILFWPAILKFS--GRKLPNNIFVHGFMTINGKKMSKSNKIGI 364
P N + F+GKD FH + +PA L S L NN+ F+ K SKS G+
Sbjct: 296 PENVKLVQFMGKDNVPFHTVIFPASLIGSKDNYTLLNNLSTTEFLNYETGKFSKSRNTGV 355
Query: 365 SPLYYLKIGMNPEWLRYYIASKLNNKIEDID--FNSQSFISCVNSDLIGKYINIASRSSS 422
G+ E R+Y+ LNN+ E D F+ F + N++L+ + N+ +R
Sbjct: 356 FGDGAKATGIPSEVWRFYL---LNNRPESSDSIFSWDDF-NFKNNELLNNFGNLVNRVLK 411
Query: 423 FIEKY--FKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY---ENRNFNKVLYIVIEQTNFI 477
+ F G + K + N+ ++ V + +Y+ E + + L I + +
Sbjct: 412 MLNTNAAFNGVVP-KIGELNEVDKKLVQEVDEHLVQYFQKLEEISLKEGLKIAMSISKLG 470
Query: 478 NIFFDQNKPWKLA-KNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP 536
N + NKPW L+ K+N E+ ++ + L+ ++L+ L+P +P+L V LN+ P
Sbjct: 471 NTYMQDNKPWDLSGKDN---ERCGQVLAILINLIKLLSTLLEPYIPSLTDKVHQQLNVEP 527
Query: 537 LQWINIF--TPLTQNHKINKYRHLMTRVDKNIVDNLLK 572
++ F + H+I+K ++ V K D+L K
Sbjct: 528 TKYSTHFDINAIPAGHEISK--EILPLVKKIEADDLKK 563
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B9MEX0 | SYM_ACIET | 6, ., 1, ., 1, ., 1, 0 | 0.5569 | 0.9496 | 0.7950 | yes | N/A |
| A1WBH1 | SYM_ACISJ | 6, ., 1, ., 1, ., 1, 0 | 0.5569 | 0.9496 | 0.7950 | yes | N/A |
| Q63W90 | SYM_BURPS | 6, ., 1, ., 1, ., 1, 0 | 0.4955 | 0.9409 | 0.7475 | yes | N/A |
| Q9K1Q0 | SYM_NEIMB | 6, ., 1, ., 1, ., 1, 0 | 0.5008 | 0.9409 | 0.7912 | yes | N/A |
| A1VKF9 | SYM_POLNA | 6, ., 1, ., 1, ., 1, 0 | 0.5463 | 0.9496 | 0.7736 | yes | N/A |
| B1YUT2 | SYM_BURA4 | 6, ., 1, ., 1, ., 1, 0 | 0.5044 | 0.9409 | 0.7527 | yes | N/A |
| Q7W1D8 | SYM_BORPA | 6, ., 1, ., 1, ., 1, 0 | 0.5043 | 0.9409 | 0.7832 | yes | N/A |
| Q143I7 | SYM_BURXL | 6, ., 1, ., 1, ., 1, 0 | 0.5044 | 0.9409 | 0.7633 | yes | N/A |
| A0K9L0 | SYM_BURCH | 6, ., 1, ., 1, ., 1, 0 | 0.5062 | 0.9409 | 0.7548 | yes | N/A |
| Q7WP45 | SYM_BORBR | 6, ., 1, ., 1, ., 1, 0 | 0.5043 | 0.9409 | 0.7832 | yes | N/A |
| Q5F585 | SYM_NEIG1 | 6, ., 1, ., 1, ., 1, 0 | 0.4956 | 0.9375 | 0.7894 | yes | N/A |
| Q7NYR7 | SYM_CHRVO | 6, ., 1, ., 1, ., 1, 0 | 0.5008 | 0.9375 | 0.7837 | yes | N/A |
| Q7W0F7 | SYM_BORPE | 6, ., 1, ., 1, ., 1, 0 | 0.5043 | 0.9409 | 0.7832 | yes | N/A |
| Q8XWT9 | SYM_RALSO | 6, ., 1, ., 1, ., 1, 0 | 0.5195 | 0.9427 | 0.7892 | yes | N/A |
| Q0BCT3 | SYM_BURCM | 6, ., 1, ., 1, ., 1, 0 | 0.5044 | 0.9409 | 0.7527 | yes | N/A |
| A3MLM5 | SYM_BURM7 | 6, ., 1, ., 1, ., 1, 0 | 0.4973 | 0.9409 | 0.7475 | yes | N/A |
| A4JGW6 | SYM_BURVG | 6, ., 1, ., 1, ., 1, 0 | 0.5115 | 0.9409 | 0.7517 | yes | N/A |
| Q2Y7P0 | SYM_NITMU | 6, ., 1, ., 1, ., 1, 0 | 0.4856 | 0.9409 | 0.7445 | yes | N/A |
| A9AHJ8 | SYM_BURM1 | 6, ., 1, ., 1, ., 1, 0 | 0.5062 | 0.9409 | 0.7506 | yes | N/A |
| B1XWM2 | SYM_LEPCP | 6, ., 1, ., 1, ., 1, 0 | 0.5796 | 0.9704 | 0.8113 | yes | N/A |
| A2SEY3 | SYM_METPP | 6, ., 1, ., 1, ., 1, 0 | 0.5551 | 0.9479 | 0.7833 | yes | N/A |
| Q1BUH6 | SYM_BURCA | 6, ., 1, ., 1, ., 1, 0 | 0.5062 | 0.9409 | 0.7548 | yes | N/A |
| Q3JUY1 | SYM_BURP1 | 6, ., 1, ., 1, ., 1, 0 | 0.4991 | 0.9409 | 0.7475 | yes | N/A |
| A9LZS9 | SYM_NEIM0 | 6, ., 1, ., 1, ., 1, 0 | 0.4991 | 0.9409 | 0.7912 | yes | N/A |
| A2SAF7 | SYM_BURM9 | 6, ., 1, ., 1, ., 1, 0 | 0.4973 | 0.9409 | 0.7475 | yes | N/A |
| Q47IK0 | SYM_DECAR | 6, ., 1, ., 1, ., 1, 0 | 0.4938 | 0.9461 | 0.7830 | yes | N/A |
| Q2KYS4 | SYM_BORA1 | 6, ., 1, ., 1, ., 1, 0 | 0.5078 | 0.9375 | 0.7814 | yes | N/A |
| Q2T087 | SYM_BURTA | 6, ., 1, ., 1, ., 1, 0 | 0.5008 | 0.9409 | 0.7548 | yes | N/A |
| Q9JWP0 | SYM_NEIMA | 6, ., 1, ., 1, ., 1, 0 | 0.4956 | 0.9409 | 0.7912 | yes | N/A |
| Q12F12 | SYM_POLSJ | 6, ., 1, ., 1, ., 1, 0 | 0.5651 | 0.9427 | 0.7880 | yes | N/A |
| B1JWS3 | SYM_BURCC | 6, ., 1, ., 1, ., 1, 0 | 0.5062 | 0.9409 | 0.7569 | yes | N/A |
| Q60CR0 | SYM_METCA | 6, ., 1, ., 1, ., 1, 0 | 0.4911 | 0.9409 | 0.7809 | yes | N/A |
| Q39DV4 | SYM_BURS3 | 6, ., 1, ., 1, ., 1, 0 | 0.5044 | 0.9409 | 0.7527 | yes | N/A |
| Q1H2F4 | SYM_METFK | 6, ., 1, ., 1, ., 1, 0 | 0.4911 | 0.9357 | 0.7789 | yes | N/A |
| B4E8E0 | SYM_BURCJ | 6, ., 1, ., 1, ., 1, 0 | 0.5097 | 0.9409 | 0.7548 | yes | N/A |
| A1TTU1 | SYM_ACIAC | 6, ., 1, ., 1, ., 1, 0 | 0.5464 | 0.9479 | 0.7733 | yes | N/A |
| A1KR57 | SYM_NEIMF | 6, ., 1, ., 1, ., 1, 0 | 0.5026 | 0.9409 | 0.7912 | yes | N/A |
| A3N6Y1 | SYM_BURP6 | 6, ., 1, ., 1, ., 1, 0 | 0.4973 | 0.9409 | 0.7475 | yes | N/A |
| A1WRC4 | SYM_VEREI | 6, ., 1, ., 1, ., 1, 0 | 0.5231 | 0.9270 | 0.7727 | yes | N/A |
| Q1LJN4 | SYM_RALME | 6, ., 1, ., 1, ., 1, 0 | 0.5292 | 0.9427 | 0.7869 | yes | N/A |
| Q62LE0 | SYM_BURMA | 6, ., 1, ., 1, ., 1, 0 | 0.4973 | 0.9409 | 0.7475 | yes | N/A |
| A1V5W0 | SYM_BURMS | 6, ., 1, ., 1, ., 1, 0 | 0.4973 | 0.9409 | 0.7475 | yes | N/A |
| B3R678 | SYM_CUPTR | 6, ., 1, ., 1, ., 1, 0 | 0.5238 | 0.9427 | 0.7892 | yes | N/A |
| Q21TB9 | SYM_RHOFD | 6, ., 1, ., 1, ., 1, 0 | 0.5506 | 0.9635 | 0.7928 | yes | N/A |
| A4G3S6 | SYM_HERAR | 6, ., 1, ., 1, ., 1, 0 | 0.5986 | 0.9461 | 0.7676 | yes | N/A |
| A3NSL6 | SYM_BURP0 | 6, ., 1, ., 1, ., 1, 0 | 0.4955 | 0.9409 | 0.7475 | yes | N/A |
| A1KAG3 | SYM_AZOSB | 6, ., 1, ., 1, ., 1, 0 | 0.4842 | 0.9531 | 0.7593 | yes | N/A |
| Q474X7 | SYM_CUPPJ | 6, ., 1, ., 1, ., 1, 0 | 0.5256 | 0.9427 | 0.7892 | yes | N/A |
| Q0K7K0 | SYM_CUPNH | 6, ., 1, ., 1, ., 1, 0 | 0.5238 | 0.9427 | 0.7915 | yes | N/A |
| A6SX05 | SYM_JANMA | 6, ., 1, ., 1, ., 1, 0 | 0.6225 | 0.9479 | 0.78 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.10 | 0.914 |
| 3rd Layer | 6.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 576 | |||
| PRK00133 | 673 | PRK00133, metG, methionyl-tRNA synthetase; Reviewe | 0.0 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 0.0 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 1e-178 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 1e-151 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 1e-141 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 1e-95 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 1e-80 | |
| PRK12267 | 648 | PRK12267, PRK12267, methionyl-tRNA synthetase; Rev | 5e-59 | |
| PLN02610 | 801 | PLN02610, PLN02610, probable methionyl-tRNA synthe | 2e-44 | |
| PLN02224 | 616 | PLN02224, PLN02224, methionine-tRNA ligase | 8e-40 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 4e-29 | |
| cd07957 | 129 | cd07957, Anticodon_Ia_Met, Anticodon-binding domai | 4e-25 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 4e-19 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 2e-09 | |
| COG0060 | 933 | COG0060, IleS, Isoleucyl-tRNA synthetase [Translat | 5e-07 | |
| PLN02843 | 974 | PLN02843, PLN02843, isoleucyl-tRNA synthetase | 8e-07 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 1e-06 | |
| cd00817 | 382 | cd00817, ValRS_core, catalytic core domain of valy | 3e-06 | |
| cd00818 | 338 | cd00818, IleRS_core, catalytic core domain of isol | 6e-06 | |
| TIGR00392 | 861 | TIGR00392, ileS, isoleucyl-tRNA synthetase | 1e-05 | |
| TIGR00392 | 861 | TIGR00392, ileS, isoleucyl-tRNA synthetase | 2e-05 | |
| COG0060 | 933 | COG0060, IleS, Isoleucyl-tRNA synthetase [Translat | 4e-05 | |
| COG0525 | 877 | COG0525, ValS, Valyl-tRNA synthetase [Translation, | 3e-04 | |
| PRK13208 | 800 | PRK13208, valS, valyl-tRNA synthetase; Reviewed | 4e-04 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 6e-04 | |
| pfam00133 | 606 | pfam00133, tRNA-synt_1, tRNA synthetases class I ( | 0.002 | |
| PRK13804 | 961 | PRK13804, ileS, isoleucyl-tRNA synthetase; Provisi | 0.003 | |
| PRK05743 | 912 | PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe | 0.003 |
| >gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 750 bits (1940), Expect = 0.0
Identities = 271/562 (48%), Positives = 360/562 (64%), Gaps = 24/562 (4%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R+I VT ALPYANG +H+GH++EYIQADIWVR+Q M + +V F+CADDAHG IM
Sbjct: 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRM-----RGHEVLFVCADDAHGTPIM 56
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
+ AEK G+TP+E I + K+ GF I FDN+ ST S EN +L Q+IY L +
Sbjct: 57 LKAEKEGITPEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYLKLK-ENGY 115
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I K I Q +DP K +FLPDR++KG CP C A+DQYGD CE C + Y+PT+LINP S +S
Sbjct: 116 IYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAIS 175
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G P++K S+HFFFKL R +FL++W LQP + NK+KEWLE+ DWDISR
Sbjct: 176 GATPVLKESEHFFFKLP--RFEEFLKEWITRSGELQPNVANKMKEWLEEG--LQDWDISR 231
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEF-ISSPNT 310
DAPYFG +IP K FYVWLDAPIGY++S KN +K G ++DE+ +T
Sbjct: 232 DAPYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDKRGGL-------DWDEYWKKDSDT 284
Query: 311 EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYL 370
E YHFIGKDI YFH LFWPA+L+ +G +LP N+F HGF+T+ G KMSKS I YL
Sbjct: 285 ELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYL 344
Query: 371 KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKG 430
++P++LRYY+A+KL I+D+DFN + F VNS+L+GK +N ASR++ FI K F G
Sbjct: 345 DH-LDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDG 403
Query: 431 YLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLA 490
L + L + + I + YE R F K L ++ +F N + D N+PWKLA
Sbjct: 404 KLP--DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKLA 461
Query: 491 KNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNH 550
K + E+L + S L FR L IYLKP+LP LA+ E FLN+ L W + PL H
Sbjct: 462 KQDG--ERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEELTWDDAQQPLA-GH 518
Query: 551 KINKYRHLMTRVDKNIVDNLLK 572
INK++ L TR++ ++ L++
Sbjct: 519 PINKFKILFTRIEDKQIEALIE 540
|
Length = 673 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 535 bits (1382), Expect = 0.0
Identities = 194/571 (33%), Positives = 290/571 (50%), Gaps = 31/571 (5%)
Query: 12 RRIFVTTALPYANGELHIGHIME-YIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
RI +T+A PYANG LH+GH+ + AD++ R+Q ++ + V F+ D HG I
Sbjct: 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNE-----VLFVSGSDEHGTPI 57
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAK 130
+AA+K G+TP+E + K+ I +D + T S + ++VQ+ + LY
Sbjct: 58 ELAAKKEGVTPQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYEN-G 116
Query: 131 LIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
I K I Q + P FLPDRY++G CP C + GD C+ C ++ PT LINP S +
Sbjct: 117 YIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKI 176
Query: 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250
SG+ P + ++HFF L + LR W P ++N WL++ K I+
Sbjct: 177 SGSTPEFRETEHFFLDLP--AFAERLRAWIESSGDWPPNVLNFTLNWLKEGLK--PRAIT 232
Query: 251 RDAPYFGIKIP--NTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSP 308
RD +GI +P K FYVW DA IGY+++ K + E+ G + EF P
Sbjct: 233 RDLD-WGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDP------EAWKEFWLDP 285
Query: 309 NTEQYHFIGKDIFYFHILFWPAILKFSGR--KLPNNIFVHGFMTINGKKMSKSNKIGISP 366
T+ Y+FIGKD FH + WPA+L SG KLP+ I ++T+ G K SKS GI
Sbjct: 286 ETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWV 345
Query: 367 LYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEK 426
L+ P++LRYY+A+ + D DF + F+ VNS+L KY N+ +R SFIEK
Sbjct: 346 DDALER-YPPDYLRYYLAANA-PENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEK 403
Query: 427 YFKGYLNMKWVKDNDT-FLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485
YF G + + D D +++ + + + E F K L ++E N + D+
Sbjct: 404 YFGGIVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKA 463
Query: 486 PWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFL---NISPLQWINI 542
PWKLAK + E+ + L R+L + L P LP A+ + L NI L W ++
Sbjct: 464 PWKLAKTDR--ERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIEKLTWESL 521
Query: 543 FTPLTQNHKINKYRHLMTRVDKNIVDNLLKN 573
PL H INK L ++D ++ L+
Sbjct: 522 K-PLLPGHPINKPEPLFKKIDDEQIEEELER 551
|
Length = 556 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 515 bits (1328), Expect = e-178
Identities = 192/574 (33%), Positives = 294/574 (51%), Gaps = 29/574 (5%)
Query: 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGA 68
K +++I VTTALPY NG H+GH+ Y+ AD++ R+ ++ +V+F+ D HG
Sbjct: 2 KMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLR-----GYEVFFLTGTDEHGT 56
Query: 69 AIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNK 128
I + AEK G+TP+E ++ K+ I FDN+ T S E+ +LVQ+ + LY +
Sbjct: 57 KIELKAEKEGITPQELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFFLKLY-E 115
Query: 129 AKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYS 188
I ++ + FLPDRY++G CP C +D GD CE C PT+LINP
Sbjct: 116 NGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVC 175
Query: 189 ILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLE-KDNKFNDW 247
++SG P ++ +H+FF+LS + D L +W N+ E L D
Sbjct: 176 VISGATPEVREEEHYFFRLS--KFQDKLLEW-YESNPDFIWPANRRNEVLNFLKEGLKDL 232
Query: 248 DISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISS 307
I+R +GI +P K YVW DA IGY+++L E G + +F +F +
Sbjct: 233 SITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDE-------DFKKFWPA 285
Query: 308 PNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPL 367
+TE HFIGKDI FH ++WPA+L +G LP IF HGF+T+ G+KMSKS + P
Sbjct: 286 DDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPD 345
Query: 368 YYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKY 427
L+ + LRYY+A +L + D DF+ + F+ VN+DL K N+A+R+ FI KY
Sbjct: 346 ELLEQ-YGVDALRYYLAREL-PEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKY 403
Query: 428 FKG----YLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQ 483
F G +D + L+ R ++ + E F K L ++ + N + D+
Sbjct: 404 FDGVVPAAGAPDLEEDEE-LLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDE 462
Query: 484 NKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI----SPLQW 539
PWKLAK + E+L + LE R+L I L P +P A+ + L + W
Sbjct: 463 QAPWKLAKED-KRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTW 521
Query: 540 INIFTPLTQNHKINKYRHLMTRVDKNIVDNLLKN 573
+ PL HK+ L R+++ ++ L++
Sbjct: 522 LGARQPLLPGHKLGPPEPLFPRIEEEAIEELIEA 555
|
Length = 558 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 445 bits (1147), Expect = e-151
Identities = 194/555 (34%), Positives = 291/555 (52%), Gaps = 30/555 (5%)
Query: 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIA 73
I +TTALPYANG+ H+GH I AD++ R++ ++ V F+C D HG I +
Sbjct: 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYE-----VLFVCGTDEHGTKIELK 55
Query: 74 AEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLII 133
AE+ G+TPKE ++ K I FD + T E+ ++VQKI+ L I
Sbjct: 56 AEQEGLTPKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKEN-GYIY 114
Query: 134 NKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGT 193
K+I Q + P +FLPDRY++G CP C ++D GD CE C PT+LINP + G
Sbjct: 115 EKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGA 174
Query: 194 KPIIKSSKHFFFKLSDKRCIDFLRKW---AIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250
KP ++ S+H+FF+LS L +W + NK + WL+ D I+
Sbjct: 175 KPELRDSEHYFFRLS--AFEKELEEWIRKNPESGSPASNVKNKAQNWLK--GGLKDLAIT 230
Query: 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNT 310
RD Y+GI +PN K YVW DA IGY++SL G + + + N DE +
Sbjct: 231 RDLVYWGIPVPNDPNKVVYVWFDALIGYISSLG---ILSGDTEDWKKWWNNDE-----DA 282
Query: 311 EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYL 370
E HFIGKDI FH ++WPA+L G LP +F HG++T+ G KMSKS + P L
Sbjct: 283 ELIHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLL 342
Query: 371 KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKG 430
+ LRYY+ + +D DF+ + F+ VN+DL K N+ +R+ FI+KYF G
Sbjct: 343 A-RFGADILRYYLLKER-PLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNG 400
Query: 431 YLNMKWVKDN--DTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWK 488
L + + D L + I + E+ F K L +++ + N + D+NKPW+
Sbjct: 401 VLPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWE 460
Query: 489 LAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQ 548
L K + +L ++ + R+L+I L PI+P L++ + FLN L+W L +
Sbjct: 461 LFKQS---PRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFE-LEWDFKLKLL-E 515
Query: 549 NHKINKYRHLMTRVD 563
HK+NK L ++++
Sbjct: 516 GHKLNKAEPLFSKIE 530
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 413 bits (1063), Expect = e-141
Identities = 150/409 (36%), Positives = 220/409 (53%), Gaps = 22/409 (5%)
Query: 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIA 73
+TTALPY NG HIGH+ I AD++ R+ ++ V F+ D HG I +A
Sbjct: 1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLR-----GYDVLFVTGTDEHGTKIELA 55
Query: 74 AEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLII 133
AEK G+TP+E ++ K+ F I FD++ T S + +LVQ+ + LY K I
Sbjct: 56 AEKEGVTPQELVDRYHEEFKELFKKFNISFDDFIRTTSERHKELVQEFFLKLYEK-GDIY 114
Query: 134 NKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGT 193
+ ++ FLPDRY++G CP C ++D GD CE C PT+LINP S +SG+
Sbjct: 115 EGEYEGWYCVSDERFLPDRYVEGTCPYCGSEDARGDQCEVCGRPLEPTELINPRSAISGS 174
Query: 194 KPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKI-KEWLEKDNKFNDWDISRD 252
P +K +H+FF+LS + D L +W + P VN++ WL+ D I+RD
Sbjct: 175 TPELKEEEHYFFRLSKFQ--DKLLEWIKENPDEPPSNVNEVVLSWLK--EGLKDLSITRD 230
Query: 253 APYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQ 312
+ GI +P K YVW DA IGY+++ K G +K+ + D P+TE
Sbjct: 231 LDW-GIPVPGDPGKVIYVWFDALIGYISATKYLS---GNPEKWKKFWADD-----PDTEI 281
Query: 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKI 372
HFIGKDI FH ++WPA+L +G LP +F HG++T+ G KMSKS + P L
Sbjct: 282 VHFIGKDIIRFHAIYWPAMLMAAGLPLPTQVFAHGWLTVEGGKMSKSRGNVVDPDELLDR 341
Query: 373 GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSS 421
+ LRYY+A + +D DF+ + F+ VNS+L N+ +R+
Sbjct: 342 -YGVDALRYYLAR-EAPEGKDGDFSWEDFVERVNSELANDLGNLVNRTL 388
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 294 bits (755), Expect = 1e-95
Identities = 110/386 (28%), Positives = 165/386 (42%), Gaps = 69/386 (17%)
Query: 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMI 72
++ +TTALPY NG H+GH+ + AD++ R+Q + + V F+ D HG I
Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRL-----RGYDVLFVTGTDEHGTKIEQ 55
Query: 73 AAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLI 132
AE+ G+TP+E + K I FD + T S + ++VQ+ + LY I
Sbjct: 56 KAEEEGVTPQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLYEN-GYI 114
Query: 133 INKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSG 192
+ + FLP
Sbjct: 115 YEGEYEGLYCVSCERFLP------------------------------------------ 132
Query: 193 TKPIIKSSKHFFFKLSDKRCIDFLRKW-AIHDKRLQPEIV-NKIKEWLEKDNKFNDWDIS 250
+ +H+FF+LS + D L +W + + PE N++ WL+ D I+
Sbjct: 133 ---EWREEEHYFFRLSKFQ--DRLLEWLEKNPDFIWPENARNEVLSWLK--EGLKDLSIT 185
Query: 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNT 310
RD +GI +P K YVW DA IGY+++ YNE +
Sbjct: 186 RDLFDWGIPVPLDPGKVIYVWFDALIGYISATGY----------YNEEWGNSWWWKDGWP 235
Query: 311 EQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYL 370
E HFIGKDI FH ++WPA+L +G LP I HG++T+ GKKMSKS + P L
Sbjct: 236 ELVHFIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLL 295
Query: 371 KIGMNPEWLRYYIASKLNNKIEDIDF 396
+ + LRYY+ + +D DF
Sbjct: 296 ERY-GADALRYYLLRERPEG-KDSDF 319
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 262 bits (671), Expect = 1e-80
Identities = 151/571 (26%), Positives = 260/571 (45%), Gaps = 81/571 (14%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
++ ++TT + Y NG+ HIGH + AD+ RF+ ++ G V+F+ D HG I
Sbjct: 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLR---GYD--VFFLTGTDEHGQKIQ 55
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
AE+AG++P+E + S+ K+ + I +D++ T + + VQ+I+ L
Sbjct: 56 RKAEEAGISPQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLLAN--- 112
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYTPTKLINP--YS 188
G+ I +Y G +C C YT ++LI
Sbjct: 113 ------------------------GD--IY--LGKYEGWYCVRCEEFYTESELIEDGYRC 144
Query: 189 ILSGTKPIIKSSKHFFFKLSDKRCIDFLRK-WAIHDKRLQP-----EIVNKIKEWLEKDN 242
+G + +FF+LS D L + + + +QP E+++ +K L+
Sbjct: 145 PPTGAPVEWVEEESYFFRLSKY--QDKLLELYEANPDFIQPASRRNEVISFVKSGLK--- 199
Query: 243 KFNDWDISR---DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELR 299
D ISR D GI +P + YVW DA YL +L G P +
Sbjct: 200 ---DLSISRTNFDW---GIPVPGDPKHVIYVWFDALTNYLTAL------GYPDDEELLAE 247
Query: 300 NFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKS 359
F+++ P H IGKDI FH ++WPA L +G LP +F HGF+T++G+KMSKS
Sbjct: 248 LFNKYW--PADV--HLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKS 303
Query: 360 NKIGISPLYYL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIAS 418
I P + + G++ +RY++ ++ +D DF+ ++FI+ +N+DL N+A
Sbjct: 304 LGNVIDPFDLVDEYGVDA--VRYFLLREIPFG-QDGDFSREAFINRINADLANDLGNLAQ 360
Query: 419 RSSSFIEKYFKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNF 476
R+ S I K F G + + ++ L + ++ +N F+K L ++
Sbjct: 361 RTLSMIAKNFDGKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRA 420
Query: 477 INIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP 536
N + D+ PW LAK + E+L + LLE R + + L+P++P LA + L +
Sbjct: 421 ANKYIDEQAPWSLAKTD--PERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEE 478
Query: 537 LQWINI----FTPLTQNHKINKYRHLMTRVD 563
+ + + L + K + R++
Sbjct: 479 DENRDFAALSWGRLAPGTTLPKPEPIFPRLE 509
|
Length = 511 |
| >gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 207 bits (530), Expect = 5e-59
Identities = 159/583 (27%), Positives = 256/583 (43%), Gaps = 112/583 (19%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
++TT + Y NG+ HIGH I AD R++ +Q G V+F+ D HG I AA
Sbjct: 7 YITTPIYYPNGKPHIGHAYTTIAADALARYKRLQ---GY--DVFFLTGTDEHGQKIQQAA 61
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134
EKAG TP+E+++ IS+ K+ I +D + T + +VQKI++ LY +
Sbjct: 62 EKAGKTPQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQG----- 116
Query: 135 KKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYTPTKLIN-PYSILSG 192
D Y KGE Y G +C C + +T ++L++ G
Sbjct: 117 ----------------DIY-KGE---------YEGWYCVSCETFFTESQLVDGGKCPDCG 150
Query: 193 TKPIIKSSKHFFFKLSDKRCIDFLRKW-AIHDKRLQPE------IVNKIKEWLEKDNKFN 245
+ + + +FF++S + D L ++ + +QPE I N IK LE
Sbjct: 151 REVELVKEESYFFRMSKYQ--DRLLEYYEENPDFIQPESRKNEMINNFIKPGLE------ 202
Query: 246 DWDISRDAPYFGIKIPNTLEKY-FYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEF 304
D ISR + +GI +P K+ YVW+DA + Y+ +L G ++ F +F
Sbjct: 203 DLSISRTSFDWGIPVPFD-PKHVVYVWIDALLNYITAL------GYGS---DDDELFKKF 252
Query: 305 ISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKS----- 359
P H +GKDI FH ++WP +L G LP +F HG+ + KMSKS
Sbjct: 253 W--PADV--HLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWLMKDGKMSKSKGNVV 308
Query: 360 ------NKIGISPL-YYLKIGMNPEWLRYYIASKLNNKIE-----DIDFNSQSFISCVNS 407
++ G+ L YYL LR E D DF+ ++ + +NS
Sbjct: 309 DPEELVDRYGLDALRYYL--------LR-----------EVPFGSDGDFSPEALVERINS 349
Query: 408 DLIGKYINIASRSSSFIEKYFKGYLNMKWVK---DNDTFLSKLRVVSSSIQKYYENRNFN 464
DL N+ +R+ + I KYF G + D + ++ + ++ E F+
Sbjct: 350 DLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEE-LIALAEETLKNYEELMEELQFS 408
Query: 465 KVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNL 524
+ L V + + N + D+ PW LAK+ E+L + L E+ R + + L P +P
Sbjct: 409 RALEEVWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPET 468
Query: 525 AKSVETFLNISP--LQW--INIFTPLTQNHKINKYRHLMTRVD 563
+K + L + W + + L K+ K L R+D
Sbjct: 469 SKKIFEQLGLEEELTSWESLLEWGGLPAGTKVAKGEPLFPRID 511
|
Length = 648 |
| >gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 2e-44
Identities = 147/567 (25%), Positives = 240/567 (42%), Gaps = 91/567 (16%)
Query: 12 RRIFVTTALPYANGELHIGHIME-YIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
R I +T+ALPY N H+G+I+ + AD++ R+ ++ N +IC D +G A
Sbjct: 17 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYN-----AIYICGTDEYGTAT 71
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAK 130
A + TPKE + + K+ D F I FD + T + + ++ Q I+ L
Sbjct: 72 ETKALEENCTPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNW 131
Query: 131 LIINKKINQFFDPIKNIFLPDRYIKGECPI--CNAKDQYGDFCECCSSIYTPTKLINPYS 188
L N + Q + FL DR ++G CP CN GD CE C + PT+LI+P
Sbjct: 132 LSENT-MQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKC 190
Query: 189 ILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWD 248
+ P I+ + H F +L P + +K+ E++ + + W
Sbjct: 191 KVCKNTPRIRDTDHLFLEL--------------------PLLKDKLVEYINETSVAGGWS 230
Query: 249 -------------------ISRDAPYFGIKIPNTLEKY----FYVWLDAPIGYLASLKNF 285
I+RD + G+ +P LEKY FYVW DAPIGY++ +
Sbjct: 231 QNAIQTTNAWLRDGLKPRCITRDLKW-GVPVP--LEKYKDKVFYVWFDAPIGYVSITACY 287
Query: 286 ---FEKGGPKKKYNELRNFDEFISSP-NTEQYHFIGKDIFYFHILFWPAILKFSGRK--L 339
+EK + +P N E Y F+GKD FH + +P+ L +G +
Sbjct: 288 TPEWEK---------------WWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTM 332
Query: 340 PNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIE--DIDFN 397
I V ++ G K SKS +G+ + E RYY+ L N+ E D F
Sbjct: 333 MKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYL---LTNRPEVSDTLFT 389
Query: 398 SQSFISCVNSDLIGKYINIASRSSSFIEK----YFKGYLNMKWVKDNDTFLSKL-RVVSS 452
+ +NS+L+ N +R SFI K + + ++ KL V
Sbjct: 390 WADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGK 449
Query: 453 SIQKYYENRNFNKV---LYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEA 509
+++Y E K+ L + ++ N + +++ WKL K + + +
Sbjct: 450 LVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKED--KPSCAIVVKTSVGL 507
Query: 510 FRILTIYLKPILPNLAKSVETFLNISP 536
+L L+P +P+ +K V LN+ P
Sbjct: 508 VYLLACLLEPFMPSFSKEVLKQLNLPP 534
|
Length = 801 |
| >gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase | Back alignment and domain information |
|---|
Score = 153 bits (387), Expect = 8e-40
Identities = 140/539 (25%), Positives = 237/539 (43%), Gaps = 69/539 (12%)
Query: 16 VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAE 75
+TT L Y N H+G I AD RFQ + ++V FI D HG I +A
Sbjct: 73 LTTPLYYVNAPPHMGSAYTTIAADSIARFQRLL-----GKKVIFITGTDEHGEKIATSAA 127
Query: 76 KAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINK 135
G P E + IS + + I +D + T ++ +V++ Y A++ N
Sbjct: 128 ANGRNPPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFY------ARVFANG 181
Query: 136 KINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKP 195
I + D G +C C +L+ P
Sbjct: 182 DIYR------------------------ADYEGLYCVNCEEYKDEKELLENNCCPVHQMP 217
Query: 196 II-KSSKHFFFKLS--DKRCIDFLRKWAIHDKRLQPEI-VNKIKEWLEKDNKFNDWDISR 251
+ + ++FF LS K D L A + + +QP +N+++ W++ + D+ ISR
Sbjct: 218 CVARKEDNYFFALSKYQKPLEDIL---AQNPRFVQPSYRLNEVQSWIK--SGLRDFSISR 272
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTE 311
+GI +P+ ++ YVW DA +GY+++L + N+ +N + +S
Sbjct: 273 ALVDWGIPVPDDDKQTIYVWFDALLGYISALT----------EDNKQQNLETAVSFGWPA 322
Query: 312 QYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLK 371
H IGKDI FH ++WPA+L +G +LP +F HGF+T +G KM KS + P + L
Sbjct: 323 SLHLIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFLTKDGMKMGKSLGNTLEP-FELV 381
Query: 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGY 431
P+ +RY+ ++ D D++ FI VN+ L N+ +R+ ++K +
Sbjct: 382 QKFGPDAVRYFFLREVEFG-NDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCEST 440
Query: 432 LNMKWVKDNDTFLSKLRVVSSSIQKY-------YENRNFNKVLYIVIEQTNFINIFFDQN 484
L + T ++ + +++K YEN + + V+E N N + DQ
Sbjct: 441 LVE-----DSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQR 495
Query: 485 KPWKLAKN-NIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINI 542
PW L K + E+ K +LE R++ + L PI P L+ + + L S Q+ +I
Sbjct: 496 APWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQFNSI 554
|
Length = 616 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 4e-29
Identities = 68/211 (32%), Positives = 92/211 (43%), Gaps = 30/211 (14%)
Query: 189 ILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWD 248
I GT P+ + + +FF + + + L K K + + N+++ WLE DW
Sbjct: 129 IYRGTHPVRIT-EQWFFDMPKFK--EKLLKALRRGKIVPEHVKNRMEAWLES---LLDWA 182
Query: 249 ISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSP 308
ISR Y+G +P E F VW D+ IG L SL EK K Y
Sbjct: 183 ISRQR-YWGTPLP---EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPAD---------- 228
Query: 309 NTEQYHFIGKDIFYFHILFWPAILK-FSGRKLPNNIFVHGFMTIN-GKKMSKSNKIGISP 366
+H IGKDI FW +L G P N+ VHGF+ G+KMSKS I P
Sbjct: 229 ----WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDP 284
Query: 367 LYYL-KIGMNPEWLRYYIASKLNNKIEDIDF 396
+ K G + LRYY+ S +DI
Sbjct: 285 SDVVEKYGADA--LRYYLTSLA-PYGDDIRL 312
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-25
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 405 VNSDLIGKYINIASRSSSFIEKYFKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRN 462
+NS+L N+ +R+ + KYF G + ++++ L + + + + E
Sbjct: 1 INSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELE 60
Query: 463 FNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILP 522
F K L ++E N + D+ PWKLAK E+L + LLE RIL I L P +P
Sbjct: 61 FRKALEEIMELARAANKYIDETAPWKLAKEE-DPERLATVLYVLLELLRILAILLSPFMP 119
Query: 523 NLAKSVETFL 532
A+ + L
Sbjct: 120 ETAEKILDQL 129
|
This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. Length = 129 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 4e-19
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 20/131 (15%)
Query: 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMI 72
+ +VTT PYANG LH+GH + +I AD R++ M+ V F+ D HG I +
Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYE-----VPFLPGWDTHGLPIEL 55
Query: 73 AAEKAGM-------------TPKEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDL 117
AE+ G PKEF+ +S K+ I +D + Y T E
Sbjct: 56 KAERKGGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKA 115
Query: 118 VQKIYDTLYNK 128
V+ I+ LY K
Sbjct: 116 VELIFSRLYEK 126
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
++ PY +G LH+GH+ Y DI R++ MQ G V F DA G AA
Sbjct: 3 YILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQ---GY--NVLFPMGFDAFGLPAENAA 57
Query: 75 EKAGMTP----KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNK 128
K G P + I + K+ GF + ++T E Q ++ LY K
Sbjct: 58 IKIGRDPEDWTEYNIKKMKEQLKRM--GFSYDWRREFTTCDPEYYKFTQWLFLKLYEK 113
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-07
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 38/203 (18%)
Query: 342 NIFVHGF-MTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQS 400
N+ HGF + G+KMSKS + P + + LR ++AS ++ ED+ F S
Sbjct: 588 NVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDK-YGADILRLWVAS--SDYWEDLRF-SDE 643
Query: 401 FISCVNSDLIGKYINIASRSSSFIEKYFKGYLN-MKWVKDNDTF----------LSKLRV 449
+ ++ K N + G L+ KD LS+L
Sbjct: 644 ILK-QVREVYRKIRNTYR--------FLLGNLDDFDPKKDAVLPEELRELDRWILSRLNS 694
Query: 450 VSSSIQKYYENRNFNKVL-----YIVIEQTNFINIFFDQNKP--WKLAKNNIYHEKLHKI 502
+ +++ YEN +F+KV+ ++ + +N+ + D K + A ++ ++
Sbjct: 695 LVKEVREAYENYDFHKVVRALMNFVSEDLSNW---YLDIIKDRLYTEAADS--PDRRAAQ 749
Query: 503 SSRLLEAFRILTIYLKPILPNLA 525
++ L + L L PILP A
Sbjct: 750 TT-LYHILKALVRLLAPILPFTA 771
|
Length = 933 |
| >gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 25/107 (23%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI-------MIA 73
PYANG+LHIGH + I D R+Q +Q ++V+++ D HG I +
Sbjct: 41 PYANGDLHIGHALNKILKDFINRYQLLQ-----GKKVHYVPGWDCHGLPIELKVLQSLDQ 95
Query: 74 AEKAGMTP-----------KEFINNISSNRKKYLDGFYIKFDNWYST 109
+ +TP K+ ++ + K+Y G + ++N Y T
Sbjct: 96 EARKELTPIKLRAKAAKFAKKTVDTQRESFKRY--GVWGDWENPYLT 140
|
Length = 974 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 11/121 (9%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
+ +V PY +G LH+GH+ Y D+ R++ MQ N V DA G
Sbjct: 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYN-----VLHPMGWDAFGLPAE 88
Query: 72 IAAEKAGMTPK----EFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYN 127
AA K G P I + K GF I + ++T E +Q + LY
Sbjct: 89 NAAIKIGTDPAKWTYYNIAYMKKQLKSL--GFSIDWRREFATCDPEYYKWIQWQFLKLYE 146
Query: 128 K 128
K
Sbjct: 147 K 147
|
Length = 814 |
| >gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 93/440 (21%), Positives = 145/440 (32%), Gaps = 131/440 (29%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMT 80
P G LH+GH + DI R++ M+ N V + D G A + EK
Sbjct: 10 PNVTGSLHMGHALNNTIQDIIARYKRMKGYN-----VLWPPGTDHAGIATQVVVEK--KL 62
Query: 81 PKEFINNISSNRKKYLD--------------------GFYIKFDNWYSTDSIENIDLVQK 120
E R+++L+ G + + Y T VQ+
Sbjct: 63 GIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQE 122
Query: 121 IYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICN---AKDQYGDFCECCSSI 177
+ LY K LI D + CP + E CS
Sbjct: 123 AFVRLYEKG-LIYR----------------DNRLVNWCPKLRTAISDI------EVCSRS 159
Query: 178 YTPTKLINPYSILSGTKPIIKSSKHFFFKLSD--KRCIDFLRKWAIHDKRLQPE-IVNKI 234
I P +F K+ D K+ ++ +++ I + PE + +
Sbjct: 160 GDV---IEPL-----------LKPQWFVKVKDLAKKALEAVKEGDI---KFVPERMEKRY 202
Query: 235 KEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYV-----WLDAPIGYLASLKNFFEKG 289
+ WLE DW ISR ++G +IP +Y W+ A A K E
Sbjct: 203 ENWLENI---RDWCISRQL-WWGHRIP-----AWYCKDGGHWVVAREEDEAIDKAAPEAC 253
Query: 290 GPKKK--------------------------YNELRNFDEFISSPNTEQYHFIGKDIFYF 323
P E ++ +F + G DI
Sbjct: 254 VPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVT----GHDI--- 306
Query: 324 HILFWPA-----ILKFSGRKLPNNIFVHGFM-TINGKKMSKSNKIGISPLYYL-KIGMNP 376
I FW A LK +G+ +++HG + +G+KMSKS I PL + G +
Sbjct: 307 -IFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADA 365
Query: 377 EWLRYYIASKLNNKIEDIDF 396
LR+ +AS + DI+
Sbjct: 366 --LRFTLAS-AATQGRDINL 382
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382 |
| >gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 6e-06
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 24/127 (18%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAG-- 78
PYANG H GH + I DI R++ MQ V D HG I + EK
Sbjct: 10 PYANGLPHYGHALNKILKDIINRYKTMQ-----GYYVPRRPGWDCHGLPIELKVEKELGI 64
Query: 79 --------MTPKEFINNISSNRKKYLD---------GFYIKFDNWYSTDSIENIDLVQKI 121
M EF +Y+D G ++ ++N Y T E ++ V +
Sbjct: 65 SGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWV 124
Query: 122 YDTLYNK 128
+ L+ K
Sbjct: 125 FKQLHEK 131
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338 |
| >gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 34/205 (16%)
Query: 342 NIFVHGF-MTINGKKMSKSNKIGISPLYYL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQ 399
N+ HGF + G+KMSKS + PL + K G + LR Y+AS ++ ED+ F S
Sbjct: 597 NVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADI--LRLYVAS--SDPWEDLRF-SD 651
Query: 400 SFISCVNSDLIGKYINIASRSSSFIEKY-----FKGYLNMKWVKDN---DTF-LSKLRVV 450
+ V KY I + F+ Y F N V+ D + LS+L +
Sbjct: 652 EILKQVVE----KYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSL 707
Query: 451 SSSIQKYYENRNFNKVL-----YIVIEQTNFINIFFDQNKP--WKLAKNNIYHEKLHKIS 503
+ + E NF+KVL +IV E +N+ + + + AK+N +K +
Sbjct: 708 VEEVNEALEKYNFHKVLRALQDFIVEELSNW---YIRIIRDRLYCEAKDN---DKRAAQT 761
Query: 504 SRLLEAFRILTIYLKPILPNLAKSV 528
+ L A L L P LP+ A+ +
Sbjct: 762 T-LYYALLTLVRLLAPFLPHTAEEI 785
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK 76
PYANG +H+GH + I DI +R++ MQ G V D HG I EK
Sbjct: 45 PYANGSIHLGHALNKILKDIILRYKTMQ---GF--NVTRKPGWDTHGLPIEHKVEK 95
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK 76
PYANG +HIGH + I DI VR++ MQ G V ++ D HG I + EK
Sbjct: 58 PYANGNIHIGHALNKILKDIIVRYKTMQ---GYD--VPYVPGWDCHGLPIELKVEK 108
|
Length = 933 |
| >gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 57/228 (25%), Positives = 91/228 (39%), Gaps = 41/228 (17%)
Query: 317 GKDIFYFHILFWPA-----ILKFSGRKLPNNIFVHGFMTI---NGKKMSKSNKIGISPLY 368
G DI I FW A L +G ++++HG + G+KMSKS I PL
Sbjct: 485 GHDI----IFFWVARMIMRGLHLTGEVPFKDVYIHGL--VRDEQGRKMSKSKGNVIDPLD 538
Query: 369 YL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKY 427
+ K G + LR+ +AS L + DI+F+ + + + K N A+R F+
Sbjct: 539 VIDKYGADA--LRFTLAS-LASPGRDINFDEKRVEG--YRNFLNKLWN-ATR---FVLMN 589
Query: 428 FKGYLNMKWVKDNDT-----FLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFI-NIFF 481
+ LS+L + + +N F++ + FI N F
Sbjct: 590 LDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALY---EFIWNDFC 646
Query: 482 DQNKPW--KLAKNNIYHEKLHKISSR--LLEAFRILTIYLKPILPNLA 525
D W +LAK +Y + K ++R L L L P +P +
Sbjct: 647 D----WYLELAKPRLYGGEEEKRAARATLYYVLDTLLRLLHPFMPFIT 690
|
Length = 877 |
| >gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYF-ICADDAHG 67
P +G LHIGH+ Y D R+Q M+ N V+F DD +G
Sbjct: 47 PTVSGSLHIGHVFSYTHTDFIARYQRMRGYN-----VFFPQGWDD-NG 88
|
Length = 800 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAA 69
D + F+T A PY NG +H GH + ++ RF+ M+ N V F G
Sbjct: 23 DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKN-----VLFPLGFHVTGTP 77
Query: 70 IMIAAEK 76
I+ AE
Sbjct: 78 ILGLAEL 84
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 24/127 (18%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK---- 76
P A G LHIGH + DI +R++ MQ G V ++ D HG EK
Sbjct: 32 PNATGLLHIGHALNKTLKDIVIRYKRMQ---GFD--VLWVPGWDHHGLPTEQKVEKKLGI 86
Query: 77 ------AGMTPKEFINNISSNRKKYLD---------GFYIKFDNWYSTDSIENIDLVQKI 121
+ ++F + +Y D G +D Y T V ++
Sbjct: 87 KGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGVSGDWDREYFTLDPGLEAAVWRV 146
Query: 122 YDTLYNK 128
+ L++K
Sbjct: 147 FVRLHDK 153
|
Other tRNA synthetase sub-families are too dissimilar to be included. Length = 606 |
| >gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQ 48
PYANG +HIGH + I D+ VR + M
Sbjct: 63 PYANGNIHIGHALNKILKDVIVRSKQML 90
|
Length = 961 |
| >gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.003
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK---- 76
PYANG++HIGH + I DI V+ + M G ++ D HG I + EK
Sbjct: 58 PYANGDIHIGHALNKILKDIIVKSKTMS---GF--DAPYVPGWDCHGLPIELKVEKKLGK 112
Query: 77 --AGMTPKEF 84
++ EF
Sbjct: 113 KGKKLSAAEF 122
|
Length = 912 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 576 | |||
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PLN02610 | 801 | probable methionyl-tRNA synthetase | 100.0 | |
| PRK00133 | 673 | metG methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12268 | 556 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00398 | 530 | metG methionyl-tRNA synthetase. The methionyl-tRNA | 100.0 | |
| PLN02224 | 616 | methionine-tRNA ligase | 100.0 | |
| PRK12267 | 648 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK11893 | 511 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG1247|consensus | 567 | 100.0 | ||
| PF09334 | 391 | tRNA-synt_1g: tRNA synthetases class I (M); InterP | 100.0 | |
| KOG0436|consensus | 578 | 100.0 | ||
| TIGR00422 | 861 | valS valyl-tRNA synthetase. The valyl-tRNA synthet | 100.0 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 100.0 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 100.0 | |
| PRK13208 | 800 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK05729 | 874 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 100.0 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 100.0 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 100.0 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 100.0 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 100.0 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 100.0 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 100.0 | |
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 100.0 | |
| cd00814 | 319 | MetRS_core catalytic core domain of methioninyl-tR | 100.0 | |
| cd00817 | 382 | ValRS_core catalytic core domain of valyl-tRNA syn | 100.0 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 100.0 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 100.0 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 100.0 | |
| KOG0433|consensus | 937 | 100.0 | ||
| KOG0432|consensus | 995 | 100.0 | ||
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 100.0 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| cd00818 | 338 | IleRS_core catalytic core domain of isoleucyl-tRNA | 100.0 | |
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 100.0 | |
| cd00668 | 312 | Ile_Leu_Val_MetRS_core catalytic core domain of is | 100.0 | |
| cd00812 | 314 | LeuRS_core catalytic core domain of leucyl-tRNA sy | 100.0 | |
| KOG0434|consensus | 1070 | 100.0 | ||
| KOG0435|consensus | 876 | 100.0 | ||
| PTZ00399 | 651 | cysteinyl-tRNA-synthetase; Provisional | 100.0 | |
| PLN02946 | 557 | cysteine-tRNA ligase | 100.0 | |
| PRK00260 | 463 | cysS cysteinyl-tRNA synthetase; Validated | 100.0 | |
| PRK14536 | 490 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00435 | 465 | cysS cysteinyl-tRNA synthetase. This model finds t | 100.0 | |
| PRK14534 | 481 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- | 100.0 | |
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PRK14535 | 699 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PF01406 | 300 | tRNA-synt_1e: tRNA synthetases class I (C) catalyt | 100.0 | |
| KOG2007|consensus | 586 | 100.0 | ||
| PRK01611 | 507 | argS arginyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG0437|consensus | 1080 | 100.0 | ||
| cd00672 | 213 | CysRS_core catalytic core domain of cysteinyl tRNA | 100.0 | |
| TIGR00456 | 566 | argS arginyl-tRNA synthetase. This model recognize | 100.0 | |
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosom | 100.0 | |
| cd00674 | 353 | LysRS_core_class_I catalytic core domain of class | 100.0 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02286 | 576 | arginine-tRNA ligase | 100.0 | |
| PRK00750 | 510 | lysK lysyl-tRNA synthetase; Reviewed | 99.97 | |
| TIGR00467 | 515 | lysS_arch lysyl-tRNA synthetase, archaeal and spir | 99.96 | |
| cd00671 | 212 | ArgRS_core catalytic core domain of arginyl-tRNA s | 99.95 | |
| PF00750 | 354 | tRNA-synt_1d: tRNA synthetases class I (R); InterP | 99.89 | |
| PF01921 | 360 | tRNA-synt_1f: tRNA synthetases class I (K); InterP | 99.88 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, | 99.85 | |
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 99.81 | |
| KOG4426|consensus | 656 | 99.77 | ||
| PRK04156 | 567 | gltX glutamyl-tRNA synthetase; Provisional | 99.71 | |
| cd07957 | 129 | Anticodon_Ia_Met Anticodon-binding domain of methi | 99.71 | |
| cd09287 | 240 | GluRS_non_core catalytic core domain of non-discri | 99.66 | |
| PRK12558 | 445 | glutamyl-tRNA synthetase; Provisional | 99.66 | |
| KOG1195|consensus | 567 | 99.64 | ||
| TIGR00464 | 470 | gltX_bact glutamyl-tRNA synthetase, bacterial fami | 99.62 | |
| PRK12410 | 433 | glutamylglutaminyl-tRNA synthetase; Provisional | 99.61 | |
| PLN03233 | 523 | putative glutamate-tRNA ligase; Provisional | 99.61 | |
| PRK14895 | 513 | gltX glutamyl-tRNA synthetase; Provisional | 99.58 | |
| cd07959 | 117 | Anticodon_Ia_Leu_AEc Anticodon-binding domain of a | 99.54 | |
| PRK01406 | 476 | gltX glutamyl-tRNA synthetase; Reviewed | 99.54 | |
| TIGR00463 | 560 | gltX_arch glutamyl-tRNA synthetase, archaeal and e | 99.52 | |
| PLN02627 | 535 | glutamyl-tRNA synthetase | 99.52 | |
| COG0008 | 472 | GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr | 99.51 | |
| PLN02907 | 722 | glutamate-tRNA ligase | 99.51 | |
| PRK05347 | 554 | glutaminyl-tRNA synthetase; Provisional | 99.5 | |
| cd07960 | 180 | Anticodon_Ia_Ile_BEm Anticodon-binding domain of b | 99.48 | |
| PTZ00402 | 601 | glutamyl-tRNA synthetase; Provisional | 99.48 | |
| cd00418 | 230 | GlxRS_core catalytic core domain of glutamyl-tRNA | 99.46 | |
| cd00807 | 238 | GlnRS_core catalytic core domain of glutaminyl-tRN | 99.44 | |
| PLN02859 | 788 | glutamine-tRNA ligase | 99.44 | |
| cd00808 | 239 | GluRS_core catalytic core domain of discriminating | 99.43 | |
| TIGR00440 | 522 | glnS glutaminyl-tRNA synthetase. This protein is a | 99.43 | |
| cd07961 | 183 | Anticodon_Ia_Ile_ABEc Anticodon-binding domain of | 99.43 | |
| cd07958 | 117 | Anticodon_Ia_Leu_BEm Anticodon-binding domain of b | 99.41 | |
| PRK14703 | 771 | glutaminyl-tRNA synthetase/YqeY domain fusion prot | 99.41 | |
| cd07962 | 135 | Anticodon_Ia_Val Anticodon-binding domain of valyl | 99.39 | |
| PF08264 | 153 | Anticodon_1: Anticodon-binding domain of tRNA; Int | 99.38 | |
| TIGR03838 | 272 | queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe | 99.37 | |
| PRK05710 | 299 | glutamyl-Q tRNA(Asp) synthetase; Reviewed | 99.36 | |
| PTZ00437 | 574 | glutaminyl-tRNA synthetase; Provisional | 99.35 | |
| PF00749 | 314 | tRNA-synt_1c: tRNA synthetases class I (E and Q), | 99.33 | |
| cd07375 | 117 | Anticodon_Ia_like Anticodon-binding domain of clas | 98.99 | |
| KOG1149|consensus | 524 | 98.94 | ||
| cd07956 | 156 | Anticodon_Ia_Arg Anticodon-binding domain of argin | 98.67 | |
| KOG1147|consensus | 712 | 98.44 | ||
| PRK12285 | 368 | tryptophanyl-tRNA synthetase; Reviewed | 97.93 | |
| PRK12556 | 332 | tryptophanyl-tRNA synthetase; Provisional | 97.85 | |
| TIGR00233 | 328 | trpS tryptophanyl-tRNA synthetase. This model repr | 97.83 | |
| PF05746 | 119 | DALR_1: DALR anticodon binding domain; InterPro: I | 97.75 | |
| PLN02486 | 383 | aminoacyl-tRNA ligase | 97.75 | |
| cd00395 | 273 | Tyr_Trp_RS_core catalytic core domain of tyrosinyl | 97.71 | |
| COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ri | 97.67 | |
| PRK13354 | 410 | tyrosyl-tRNA synthetase; Provisional | 97.58 | |
| PRK12284 | 431 | tryptophanyl-tRNA synthetase; Reviewed | 97.5 | |
| PRK08560 | 329 | tyrosyl-tRNA synthetase; Validated | 97.4 | |
| PRK05912 | 408 | tyrosyl-tRNA synthetase; Validated | 97.33 | |
| cd00806 | 280 | TrpRS_core catalytic core domain of tryptophanyl-t | 97.32 | |
| PTZ00126 | 383 | tyrosyl-tRNA synthetase; Provisional | 97.31 | |
| PRK00927 | 333 | tryptophanyl-tRNA synthetase; Reviewed | 97.06 | |
| smart00836 | 122 | DALR_1 DALR anticodon binding domain. This all alp | 96.79 | |
| KOG1148|consensus | 764 | 96.76 | ||
| COG0162 | 401 | TyrS Tyrosyl-tRNA synthetase [Translation, ribosom | 96.51 | |
| PTZ00348 | 682 | tyrosyl-tRNA synthetase; Provisional | 95.67 | |
| cd00805 | 269 | TyrRS_core catalytic core domain of tyrosinyl-tRNA | 93.25 | |
| PF00579 | 292 | tRNA-synt_1b: tRNA synthetases class I (W and Y); | 92.51 | |
| PRK14714 | 1337 | DNA polymerase II large subunit; Provisional | 92.28 | |
| PLN02886 | 389 | aminoacyl-tRNA ligase | 90.18 | |
| COG1656 | 165 | Uncharacterized conserved protein [Function unknow | 89.99 | |
| COG0751 | 691 | GlyS Glycyl-tRNA synthetase, beta subunit [Transla | 87.17 | |
| PF09190 | 63 | DALR_2: DALR domain; InterPro: IPR015273 The amino | 86.38 | |
| smart00840 | 56 | DALR_2 This DALR domain is found in cysteinyl-tRNA | 85.71 | |
| PRK01233 | 682 | glyS glycyl-tRNA synthetase subunit beta; Validate | 85.59 | |
| TIGR00234 | 377 | tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy | 84.99 | |
| PRK04023 | 1121 | DNA polymerase II large subunit; Validated | 84.8 | |
| TIGR00211 | 691 | glyS glycyl-tRNA synthetase, tetrameric type, beta | 83.65 | |
| cd00805 | 269 | TyrRS_core catalytic core domain of tyrosinyl-tRNA | 83.57 | |
| PF00579 | 292 | tRNA-synt_1b: tRNA synthetases class I (W and Y); | 83.33 | |
| PRK12283 | 398 | tryptophanyl-tRNA synthetase; Reviewed | 82.98 | |
| PRK12282 | 333 | tryptophanyl-tRNA synthetase II; Reviewed | 82.21 | |
| PRK14908 | 1000 | glycyl-tRNA synthetase; Provisional | 81.13 | |
| PRK12283 | 398 | tryptophanyl-tRNA synthetase; Reviewed | 81.11 |
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-119 Score=948.13 Aligned_cols=544 Identities=35% Similarity=0.649 Sum_probs=514.3
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
..++++||+++|||||+|||||+++++.+||++||+|++| ++|.|++|+|+||+||+.+|+++|++|+++|++++
T Consensus 3 ~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G-----~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~ 77 (558)
T COG0143 3 MMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRG-----YEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNH 77 (558)
T ss_pred CCCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcC-----CeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCC
Q psy2393 90 SNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGD 169 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~ 169 (576)
+.++++++.|+|++|.|.+|+++.|.+.++++|.+|+ ++|+||.+..++|||+.|++||+|++|+|+||.|+..+++|+
T Consensus 78 ~~~~~~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~-~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD 156 (558)
T COG0143 78 EEFKELFKALNISFDNFIRTTSPEHKELVQEFFLKLY-ENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGD 156 (558)
T ss_pred HHHHHHHHHhCCcccccccCCCHHHHHHHHHHHHHHH-HCCCEeccceeeeEcccccccccchheeccCCCcCccccCcc
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred ccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC---CCChhHHHHHHHHHhhcCCCCC
Q psy2393 170 FCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK---RLQPEIVNKIKEWLEKDNKFND 246 (576)
Q Consensus 170 ~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~d 246 (576)
.|++||+.++|.+|++|+|++||+.++.|.+.+|||+| +++++.+++| +++. .+|++.++.+.+|++ .|++|
T Consensus 157 ~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L--~~~~~~L~~~-~~~~~~~~~p~~~~ne~~~~i~--~GL~d 231 (558)
T COG0143 157 QCENCGRTLDPTELINPVCVISGATPEVREEEHYFFRL--SKFQDKLLEW-YESNPDFIWPANRRNEVLNFLK--EGLKD 231 (558)
T ss_pred hhhhccCcCCchhcCCCeeEeeCCCcccccceeEEEEH--HHhHHHHHHH-HHhCccccCChHHHHHHHHHHH--ccCcc
Confidence 99999999999999999999999999999999999999 9999999999 8764 489999999999999 99999
Q ss_pred cccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHh
Q psy2393 247 WDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 247 w~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~ 326 (576)
|+|||..++||+|+|+++++++||||||+++|++.+++++. .|. +.+|++||++++++++||+|+||++||++
T Consensus 232 ~~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~~~~~-~~~------~~~~~~~W~~~~~e~vhfIGKDii~FHav 304 (558)
T COG0143 232 LSITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGELAE-IGD------DEDFKKFWPADDTELVHFIGKDIIRFHAV 304 (558)
T ss_pred cceecCCCCCCccCCCCCCCEEEEeeccHHHHHHHhcchhc-cCC------hHHHHhhCCCCCceEEEEeccccCcchhh
Confidence 99999656999999999999999999999999999988775 222 16899999776899999999999999999
Q ss_pred HHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhh
Q psy2393 327 FWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406 (576)
Q Consensus 327 ~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~ 406 (576)
+|||||++.|.++|+.+++|||++++|+|||||+||+|++.++++. ||+|++||||++..|.+ .|.+||++.+.+++|
T Consensus 305 ~wPamL~~~~~~lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~-~~~D~lRYyL~~~~p~~-~D~dFs~~~f~~rvN 382 (558)
T COG0143 305 YWPAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQ-YGVDALRYYLARELPEG-SDGDFSWEDFVERVN 382 (558)
T ss_pred HHHHHHHhCCCCCCCEEEeeeeEEECCccccccCCcEEeHHHHHHH-cCchHhHHHHHHhCCCC-CCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999998865 788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCcc----cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGYLNMKW----VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~----~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~ 482 (576)
+++.+.++|+++|+.+|+.++++|.+|... ..| ..++..+..+.+.+.++|+.+++++|++.+++++..+|+|++
T Consensus 383 ~dL~n~lgNl~~R~~~fi~k~~~g~vp~~~~~~~~~d-~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~ 461 (558)
T COG0143 383 ADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEED-EELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYID 461 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcCCccccccchhh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999888743 225 789999999999999999999999999999999999999999
Q ss_pred hcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc----ccccccccCCCCCcccCCCCCC
Q psy2393 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP----LQWINIFTPLTQNHKINKYRHL 558 (576)
Q Consensus 483 ~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~----~~~~~~~~~~~~g~~~~~~~~l 558 (576)
..+||.+.++ ..++++++|++.+++++++++++|+||||.+|++||++||.+. ..|.....++..||.++++++|
T Consensus 462 ~~~PW~l~k~-~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 540 (558)
T COG0143 462 EQAPWKLAKE-DKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWLGARQPLLPGHKLGPPEPL 540 (558)
T ss_pred cCCCchhhcc-CcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCccccccchhhhhccccCCCcccCCcccC
Confidence 9999999887 4678899999999999999999999999999999999999973 3566666667779999999999
Q ss_pred ccCCChHHHHHHHhccC
Q psy2393 559 MTRVDKNIVDNLLKNKN 575 (576)
Q Consensus 559 f~r~d~~~~~~~~~~~~ 575 (576)
|+|||.++++++.+..+
T Consensus 541 F~ri~~~~~~~~~~~~~ 557 (558)
T COG0143 541 FPRIEEEAIEELIEALK 557 (558)
T ss_pred ccccCHHHHHHHHHhhc
Confidence 99999999999988754
|
|
| >PLN02610 probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-109 Score=915.78 Aligned_cols=536 Identities=26% Similarity=0.470 Sum_probs=488.6
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhh-HHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIME-YIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~-~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~ 87 (576)
+++++++||+|+|||||+|||||+++ ++.+|+++||+|++| ++|.|++|+|+||+||+.+|++.|.+|++++++
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G-----~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~ 88 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRG-----YNAIYICGTDEYGTATETKALEENCTPKEICDK 88 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCC-----CceEecccccCCcHHHHHHHHHcCCCHHHHHHH
Confidence 35678999999999999999999996 788999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCC--CCCCC
Q psy2393 88 ISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPI--CNAKD 165 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~--c~~~~ 165 (576)
+++.+++++++|||++|.|++|++++|.+.++++|.+|+ ++|+||++...++||+.|++||+|++|+|+||. |++++
T Consensus 89 ~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~-~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~ 167 (801)
T PLN02610 89 YHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLM-ENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDS 167 (801)
T ss_pred HHHHHHHHHHHcCCccccCccCCCHHHHHHHHHHHHHHH-HCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccc
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999 99999
Q ss_pred CCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC----CCChhHHHHHHHHHhhc
Q psy2393 166 QYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK----RLQPEIVNKIKEWLEKD 241 (576)
Q Consensus 166 ~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~l~~~ 241 (576)
++|+.|+.||+++++.+|++|+|++||++++++.+++|||+| +++++++.+| +++. .|+++..+.+.+||+
T Consensus 168 a~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~L--s~~~~~L~~~-~~~~~~~~~~~~n~~~~~~~~l~-- 242 (801)
T PLN02610 168 ARGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLEL--PLLKDKLVEY-INETSVAGGWSQNAIQTTNAWLR-- 242 (801)
T ss_pred cccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEh--HHHHHHHHHH-HHhCCCCCCcCHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999999 9999999999 7642 477777788889998
Q ss_pred CCCCCcccccCCCCCCeecCCC--CCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccC-CCcceEEEeee
Q psy2393 242 NKFNDWDISRDAPYFGIKIPNT--LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISS-PNTEQYHFIGK 318 (576)
Q Consensus 242 ~~~~dw~isR~~~~WG~~iP~~--~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~-~~~~~i~~~G~ 318 (576)
.+++||||||+. .||+|+|.+ +++++||||||+++|++.+..+. .+|..||++ ++++++||+|+
T Consensus 243 ~gL~d~~IsR~~-~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~------------~~~~~~W~~~~~~~~~hfiGK 309 (801)
T PLN02610 243 DGLKPRCITRDL-KWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYT------------PEWEKWWKNPENVELYQFMGK 309 (801)
T ss_pred CCCCCcceeeec-CCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhh------------hHHHHhcCCcccceEEEEEee
Confidence 899999999987 999999976 89999999999999999864332 347789975 36788999999
Q ss_pred cCcchhHhHHHHHHHhcCCC--CCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCccc
Q psy2393 319 DIFYFHILFWPAILKFSGRK--LPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDF 396 (576)
Q Consensus 319 D~~~fh~~~~~a~l~~~~~~--~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~f 396 (576)
||++||+++|||||+++|.+ +|+.+++|||++++|+|||||+||+|+|.++++.+||+|++||||++.++.. .|.+|
T Consensus 310 Di~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~-~D~dF 388 (801)
T PLN02610 310 DNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEV-SDTLF 388 (801)
T ss_pred ecchhHHHHHHHHHHhCCCCcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCC-CCCcC
Confidence 99999999999999999965 8899999999999999999999999999999994499999999999987766 78899
Q ss_pred chhhHhhhhhHHHHHHHHHHHHHHHHHHH----HHcCCCCCCc----cc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy2393 397 NSQSFISCVNSDLIGKYINIASRSSSFIE----KYFKGYLNMK----WV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVL 467 (576)
Q Consensus 397 s~~~~~~~~~~~~~~~~~n~~~R~~~~~~----~~~~~~~~~~----~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~ 467 (576)
|++.+.+++|+++++.++|+++|+.+++. +++++.+|.. .. .| .+|++.+.++.+.+.++|++++++.|+
T Consensus 389 s~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d-~~Ll~~~~~~i~~v~~~me~~~~~~Al 467 (801)
T PLN02610 389 TWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLT-KKLAEKVGKLVEQYVEAMEKVKLKQGL 467 (801)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhh-HHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999998 5677877652 11 25 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc--ccccc----
Q psy2393 468 YIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP--LQWIN---- 541 (576)
Q Consensus 468 ~~l~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~--~~~~~---- 541 (576)
+.|+++++.+|+|++..+||.+.+++ ..++.++++++.++++.++++|+||||++|++||++||++. ..|..
T Consensus 468 ~~I~~l~~~~NkYIe~~kPW~L~k~d--~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~~~~~~~~~~~~~ 545 (801)
T PLN02610 468 KTAMSISSEGNAYLQESQFWKLYKED--KPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPESLSLSDEKGE 545 (801)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhCCC--HHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCCcccccchhcccc
Confidence 99999999999999999999886642 34577889999999999999999999999999999999864 23321
Q ss_pred c------ccCCCCCcccCCCCCCccCCChHHHHHHHh
Q psy2393 542 I------FTPLTQNHKINKYRHLMTRVDKNIVDNLLK 572 (576)
Q Consensus 542 ~------~~~~~~g~~~~~~~~lf~r~d~~~~~~~~~ 572 (576)
+ +..+..||.++++++||+||+.++++++.+
T Consensus 546 ~~~~~~~~~~~~~g~~i~~~~~lF~ri~~~~~~~~~~ 582 (801)
T PLN02610 546 VARAKRPWELVPAGHKIGTPEPLFKELKDEEVEAYRE 582 (801)
T ss_pred ccccccccccCCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 0 122456999999999999999999876643
|
|
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-107 Score=905.41 Aligned_cols=536 Identities=50% Similarity=0.927 Sum_probs=494.8
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
++++|++|||||||.+||||+++++.+|+++||+|++| ++|.|++|+|+||+||+.+|++.|.+|++++++|.+.
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G-----~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~ 76 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRG-----HEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAE 76 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcC-----CeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcc
Q psy2393 92 RKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFC 171 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c 171 (576)
|+++|++|||++|.|++|++++|.+.++++|.+|+ ++|+||+++..+|||+.|++||++++|+|+||.|++.+++|+.|
T Consensus 77 ~~~~~~~l~i~~d~f~rtt~~~h~~~v~~~~~~L~-~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~c 155 (673)
T PRK00133 77 HKRDFAGFGISFDNYGSTHSEENRELAQEIYLKLK-ENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNC 155 (673)
T ss_pred HHHHHHHhCCCCCCCccCCcHHHHHHHHHHHHHHH-HCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchh
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred ccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC-CCCChhHHHHHHHHHhhcCCCCCcccc
Q psy2393 172 ECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD-KRLQPEIVNKIKEWLEKDNKFNDWDIS 250 (576)
Q Consensus 172 ~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~dw~is 250 (576)
+.||..+++.+|++|+|.+||++++++.++||||+| +++++.+.++ +++ ..||+..++.+.+||+ .+++|||||
T Consensus 156 e~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~--~~l~d~~IS 230 (673)
T PRK00133 156 EVCGATYSPTELINPKSAISGATPVLKESEHFFFKL--PRFEEFLKEW-ITRSGELQPNVANKMKEWLE--EGLQDWDIS 230 (673)
T ss_pred hhccccCChHhhcCCccccCCCcceEEecceEEEEH--HHHHHHHHHH-HhcCCCCCHHHHHHHHHHHh--CCCccccee
Confidence 999999999999999999999999999999999999 9999999999 654 4689999999999999 899999999
Q ss_pred cCCCCC-CeecCCCCCcEEEEEeecccchhhhcchhhhh-CCCCCcccccccccccc-cCCCcceEEEeeecCcchhHhH
Q psy2393 251 RDAPYF-GIKIPNTLEKYFYVWLDAPIGYLASLKNFFEK-GGPKKKYNELRNFDEFI-SSPNTEQYHFIGKDIFYFHILF 327 (576)
Q Consensus 251 R~~~~W-G~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~w-~~~~~~~i~~~G~D~~~fh~~~ 327 (576)
|+. .| |+|+|+++++++|||||++++|++....+... .+ ..|+.|| +++++.++||+|+|+++||+++
T Consensus 231 R~~-~W~GipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~--------~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~ 301 (673)
T PRK00133 231 RDA-PYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDKRGG--------LDWDEYWKKDSDTELYHFIGKDIIYFHTLF 301 (673)
T ss_pred eeC-CccceECCCCCCeEEEEcccchhhhhHHHhhhcccccc--------hhHHHhcCCCCCceEEEEEeecchhHHHHH
Confidence 997 89 99999999999999999999999987544332 11 4688899 6767888999999999999999
Q ss_pred HHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhH
Q psy2393 328 WPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNS 407 (576)
Q Consensus 328 ~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~ 407 (576)
|||+++++|+++|+.+++||||+++|+|||||+||+|+|.|++++ ||+|++|||+++.++.+..|.+|+++.+....|+
T Consensus 302 wpa~l~a~g~~lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie~-ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~ 380 (673)
T PRK00133 302 WPAMLEGAGYRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDH-LDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNS 380 (673)
T ss_pred HHHHHHhCCCCCCCEEeeeccEEecCCcccccCCcccCHHHHHHH-cCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999998766546889999998888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCcc
Q psy2393 408 DLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487 (576)
Q Consensus 408 ~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~ 487 (576)
+++++++|+++|+.+++.+++++.++.. ..| .++++.+..+.+.+.+++++|+++.+++++++|++.+|+|++..+||
T Consensus 381 ~l~~~l~Nl~~R~~~~~~k~~~~~~~~~-~~d-~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw 458 (673)
T PRK00133 381 ELVGKVVNFASRTAGFINKRFDGKLPDA-LAD-PELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPW 458 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCC-ccc-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 9999999999999999887776655431 236 99999999999999999999999999999999999999999999999
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcccccccccCCCCCcccCCCCCCccCCChHHH
Q psy2393 488 KLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHKINKYRHLMTRVDKNIV 567 (576)
Q Consensus 488 ~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~~~~~~~~~~~~g~~~~~~~~lf~r~d~~~~ 567 (576)
.+.++ ...+++.++++++++++.++++|+||||++||+||+.||.+...|+.... +.+||.++++++||+||+.+++
T Consensus 459 ~~~~~--~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~~~~~~~~~~-~~~g~~~~~~~~lf~~~~~~~~ 535 (673)
T PRK00133 459 KLAKQ--DGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEELTWDDAQQ-PLAGHPINKFKILFTRIEDKQI 535 (673)
T ss_pred hhhcC--CHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCCCccChhhhcC-CCCCCCcCCCCcCCcCCCHHHH
Confidence 77654 23456788899999999999999999999999999999997666765433 4469999999999999999999
Q ss_pred HHHHhc
Q psy2393 568 DNLLKN 573 (576)
Q Consensus 568 ~~~~~~ 573 (576)
+++.++
T Consensus 536 ~~~~~~ 541 (673)
T PRK00133 536 EALIEA 541 (673)
T ss_pred HHHHHH
Confidence 877654
|
|
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-104 Score=870.21 Aligned_cols=541 Identities=35% Similarity=0.649 Sum_probs=493.7
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhH-HHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEY-IQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~-i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
.++++|++|||||||.|||||++++ +.+|+++||+|++| ++|.+++|+||||+||+.+|++.|.++.++++++.
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G-----~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~ 76 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKG-----NEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYH 76 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcC-----CceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHH
Confidence 3579999999999999999999997 99999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCC
Q psy2393 90 SNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGD 169 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~ 169 (576)
+.|.++|++|||++|.+++|++++|.+.++++|.+|+ ++|++|++.++++||+.|+++|++++|.|+||.|+..+++|+
T Consensus 77 ~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~-~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~ 155 (556)
T PRK12268 77 EEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLY-ENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGD 155 (556)
T ss_pred HHHHHHHHHcCCcCCCCcCCCCHHHHHHHHHHHHHHH-HCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCc
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999998889999
Q ss_pred ccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC-CCCChhHHHHHHHHHhhcCCCCCcc
Q psy2393 170 FCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD-KRLQPEIVNKIKEWLEKDNKFNDWD 248 (576)
Q Consensus 170 ~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~dw~ 248 (576)
.|+.||..+++.++++|+|++||++++++.++||||++ +++++.+.++ +++ ..+|+..++++.+|++ .+++|||
T Consensus 156 ~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l--~~~~~~l~~~-~~~~~~~p~~~~~~~~~~l~--~~l~Dw~ 230 (556)
T PRK12268 156 QCDNCGALLDPTDLINPRSKISGSTPEFRETEHFFLDL--PAFAERLRAW-IESSGDWPPNVLNFTLNWLK--EGLKPRA 230 (556)
T ss_pred hhhhccccCChHHhcCCccccCCCcCeEEecceEEEEh--HHHHHHHHHH-HhhccCCCHHHHHHHHHHHh--CCCCCcC
Confidence 99999999999999999999999999999999999999 9999999999 765 4799999999999998 8999999
Q ss_pred cccCCCCCCeecC--CCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHh
Q psy2393 249 ISRDAPYFGIKIP--NTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 249 isR~~~~WG~~iP--~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~ 326 (576)
||||+ .||+|+| .++++++|||||++.+|++....+.+..|.+ ..|+++|.+++...++++|+|+++||..
T Consensus 231 ISR~~-~WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~------~~~~~~w~ds~~~~~~~~G~D~~~Fh~~ 303 (556)
T PRK12268 231 ITRDL-DWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDP------EAWKEFWLDPETKSYYFIGKDNIPFHSI 303 (556)
T ss_pred ceeeC-CCCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCc------hHHHHHhCCCCCeEEEEEeeccCcchHH
Confidence 99999 8999999 7789999999999999988766555443321 4677899766677899999999999999
Q ss_pred HHHHHHHhcC--CCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhh
Q psy2393 327 FWPAILKFSG--RKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISC 404 (576)
Q Consensus 327 ~~~a~l~~~~--~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~ 404 (576)
+|++++++.+ .+.|+.+++||||+++|+|||||+||+|+|.|++++ ||+|++|||+++.++.. +|++|+++.+...
T Consensus 304 ~~p~~l~~~~~~~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~-yGaDalR~~ll~~~~~~-~d~~f~~~~~~~~ 381 (556)
T PRK12268 304 IWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALER-YPPDYLRYYLAANAPEN-SDTDFTWEEFVRR 381 (556)
T ss_pred HHHHHHHhcCCCCCCCCEeeccCCEEECCeeeccCCCcccCHHHHHHH-cCcHHHHHHHHhcCCCC-CCCCCCHHHHHHH
Confidence 9999999988 788999999999999999999999999999999999 99999999999875544 7889999998877
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q psy2393 405 VNSDLIGKYINIASRSSSFIEKYFKGYLNM-KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482 (576)
Q Consensus 405 ~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~-~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~ 482 (576)
.+++++++++|+++|+.+++.+..++.++. ... .| +|+++.+..+.+.+.+++++|+++.|++++++|++.+|+|++
T Consensus 382 ~~~~~~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~d-~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~ 460 (556)
T PRK12268 382 VNSELADKYGNLVNRVLSFIEKYFGGIVPPGELGDED-RELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLD 460 (556)
T ss_pred HhHHhhhhHHHHHHHHHHHHHHhcCCcCCCCcCCccc-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999988765554442 222 26 999999999999999999999999999999999999999999
Q ss_pred hcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC---cccccccccCCCCCcccCCCCCCc
Q psy2393 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS---PLQWINIFTPLTQNHKINKYRHLM 559 (576)
Q Consensus 483 ~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~---~~~~~~~~~~~~~g~~~~~~~~lf 559 (576)
..+||.+.++ ....++.+++++.++++.++++|+|||||+||+||+.||.+ ...|+.+. .++.||.|+.+++||
T Consensus 461 ~~kpw~~~~~--~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~~~~~~~~w~~~~-~~~~g~~i~~~~~lf 537 (556)
T PRK12268 461 EKAPWKLAKT--DRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIEKLTWESLK-PLLPGHPINKPEPLF 537 (556)
T ss_pred cCCChhhhcC--CHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCCCCCcccchhhhc-CCCCCCCCCCCCCCC
Confidence 9999977543 24456778888889999999999999999999999999973 35787654 356799999999999
Q ss_pred cCCChHHHHHHHhccC
Q psy2393 560 TRVDKNIVDNLLKNKN 575 (576)
Q Consensus 560 ~r~d~~~~~~~~~~~~ 575 (576)
+||+.++|++++++-+
T Consensus 538 ~r~~~~~~~~~~~~~~ 553 (556)
T PRK12268 538 KKIDDEQIEEELERLG 553 (556)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998754
|
|
| >TIGR00398 metG methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-103 Score=852.68 Aligned_cols=521 Identities=36% Similarity=0.662 Sum_probs=475.1
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
++|++|||||||.+||||+++++.+|+++||+|++| ++|.+++|+||||+||+.+|+++|++|+++++.+.+.|+
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G-----~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~ 75 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRG-----YEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFK 75 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcC-----CeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcccc
Q psy2393 94 KYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCEC 173 (576)
Q Consensus 94 ~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~ 173 (576)
+++++|||++|.+++|+++.|...++++|.+|. ++|++|+++..++||+.|+++|+|++|+|+||.|+..+++|+.|+.
T Consensus 76 ~~l~~LgI~~D~~~~t~~~~~~~~v~~~~~~L~-~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~ 154 (530)
T TIGR00398 76 DDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLK-ENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEV 154 (530)
T ss_pred HHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHH-HCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhh
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC----CCCChhHHHHHHHHHhhcCCCCCccc
Q psy2393 174 CSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD----KRLQPEIVNKIKEWLEKDNKFNDWDI 249 (576)
Q Consensus 174 cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~dw~i 249 (576)
||..+++.++++|+|++||++++++.++||||+| +++++.+.++ +++ ..+|+..++.+.+|++ ++++||||
T Consensus 155 cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~--~~l~d~~i 229 (530)
T TIGR00398 155 CGRHLEPTELINPRCKICGAKPELRDSEHYFFRL--SAFEKELEEW-IRKNPESGSPASNVKNKAQNWLK--GGLKDLAI 229 (530)
T ss_pred ccccCCHHHhcCCccccCCCcceEEecceEEEEh--HHHHHHHHHH-HHhCCccCCCcHHHHHHHHHHHh--CCCCCccc
Confidence 9999999999999999999999999999999999 9999999999 763 3577788899999999 78999999
Q ss_pred ccCCCC-CCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCC-CcceEEEeeecCcchhHhH
Q psy2393 250 SRDAPY-FGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSP-NTEQYHFIGKDIFYFHILF 327 (576)
Q Consensus 250 sR~~~~-WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~-~~~~i~~~G~D~~~fh~~~ 327 (576)
||++ . ||+|+|.++++++|||||++++|++..+.. .|. ..+++++|+.+ +++++|++|+||++||+++
T Consensus 230 SR~~-~~WGipvP~~~~~~~yvW~da~~~y~~~~~~~---~~~------~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~ 299 (530)
T TIGR00398 230 TRDL-VYWGIPVPNDPNKVVYVWFDALIGYISSLGIL---SGD------TEDWKKWWNNDEDAELIHFIGKDIVRFHTIY 299 (530)
T ss_pred cCcC-CCCCeeCCCCCCcEEEEeecchHHhHhhhccc---cCC------hhhHHHhCCCCCCceEEEEEecccchhHHHH
Confidence 9999 7 999999999999999999999999865321 110 14578899764 7889999999999999999
Q ss_pred HHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhH
Q psy2393 328 WPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNS 407 (576)
Q Consensus 328 ~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~ 407 (576)
|+++++++|+++|+.+++||||+++|+|||||+||+|+|+|+++. ||+|++|||+++.++ ...|++|+++.+.+..|+
T Consensus 300 ~~a~l~~~~~~~~~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~-~g~D~lR~~l~~~~~-~~~d~~f~~~~l~~~~n~ 377 (530)
T TIGR00398 300 WPAMLMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLAR-FGADILRYYLLKERP-LGKDGDFSWEDFVERVNA 377 (530)
T ss_pred HHHHHHhCCCCCCCEEEeeccEEECCceecccCCceecHHHHHHH-cCchHHHHHHhhCCC-CCCCCCCCHHHHHHHHHH
Confidence 999999999988999999999999999999999999999999999 999999999998754 447899999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCc--cc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhc
Q psy2393 408 DLIGKYINIASRSSSFIEKYFKGYLNMK--WV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQN 484 (576)
Q Consensus 408 ~~~~~~~n~~~R~~~~~~~~~~~~~~~~--~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~ 484 (576)
+++++++|+++|+.+++.++.++.++.. .. .| .++++.+..+.+.+.+++++|+++.+++++++|++.+|+|++.+
T Consensus 378 ~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d-~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~ 456 (530)
T TIGR00398 378 DLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEED-KKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDEN 456 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCCCcccchhh-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999887665555532 12 26 99999999999999999999999999999999999999999999
Q ss_pred CccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcccccccccCCCCCcccCCCCCCccCCC
Q psy2393 485 KPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHKINKYRHLMTRVD 563 (576)
Q Consensus 485 k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~~~~~~~~~~~~g~~~~~~~~lf~r~d 563 (576)
+||.+.+++ . +.+.+++++.+++++++++|+|||||+||+||+.||.+...|. ...+.+||.++++++||+|||
T Consensus 457 kpw~~~~~~--~-~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~~--~~~~~~~~~i~~~~~lf~ki~ 530 (530)
T TIGR00398 457 KPWELFKQS--P-RLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFELEWDF--KLKLLEGHKLNKAEPLFSKIE 530 (530)
T ss_pred CChhhcCCh--H-HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCChhhhh--hcCCCCCCCCCCCCCCCCCCC
Confidence 999887542 2 4567778888999999999999999999999999998643332 122446999999999999997
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma |
| >PLN02224 methionine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-97 Score=804.43 Aligned_cols=512 Identities=24% Similarity=0.412 Sum_probs=449.8
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHH
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~ 87 (576)
...+++|+|++|||||||+|||||+++++++|+++||+|++| ++|.|++|+||||+||+.+|++.|.+|.++|++
T Consensus 65 ~~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G-----~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~ 139 (616)
T PLN02224 65 VDEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLG-----KKVIFITGTDEHGEKIATSAAANGRNPPEHCDI 139 (616)
T ss_pred CCCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcC-----CceEEecCcCCcchHHHHHHHHcCCChHHHHHH
Confidence 345678999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCC
Q psy2393 88 ISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY 167 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~ 167 (576)
+.+.+++.+++|||++|.|++|+++.|.+.++++|.+|+ ++|+||+++.++|||++|++++.+.
T Consensus 140 ~~~~~~~~~~~l~I~~D~f~rTt~~~h~~~vq~~f~~L~-~~G~Iy~~~~~~~yc~~ce~f~~~~--------------- 203 (616)
T PLN02224 140 ISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVF-ANGDIYRADYEGLYCVNCEEYKDEK--------------- 203 (616)
T ss_pred HHHHHHHHHHHcCCCCCcCeeCCCHHHHHHHHHHHHHHH-HCCCEEEeeeeeeecCCCCCCCCHH---------------
Confidence 999999999999999999999999999999999999999 9999999999999987777666543
Q ss_pred CCccccCCCcCCCCccCC-CcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC--CC-ChhHHHHHHHHHhhcCC
Q psy2393 168 GDFCECCSSIYTPTKLIN-PYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK--RL-QPEIVNKIKEWLEKDNK 243 (576)
Q Consensus 168 g~~c~~cg~~~~~~~l~~-p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~~ 243 (576)
++++ +.|..||++++++.+++|||+| +++++.+.+| ++.. ++ |+..++.+.+||+ ++
T Consensus 204 --------------~l~~~~~~~~~~~~~~~~~e~~~ff~L--s~~~~~L~~~-~~~~~~~~~p~~~~~~~~~~l~--~g 264 (616)
T PLN02224 204 --------------ELLENNCCPVHQMPCVARKEDNYFFAL--SKYQKPLEDI-LAQNPRFVQPSYRLNEVQSWIK--SG 264 (616)
T ss_pred --------------HHcCCCCCCCCCCcceEEecceEEEEh--HHHHHHHHHH-HHhCCCccCCHHHHHHHHHHHh--cC
Confidence 4433 5677889999999999999999 9999999999 6543 34 6667799999999 89
Q ss_pred CCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcch
Q psy2393 244 FNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYF 323 (576)
Q Consensus 244 ~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~f 323 (576)
++||||||+...||+|+|.++++++||||||+++|++.++.+....|. ...+..+|+.. +||+|+|+++|
T Consensus 265 L~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~------~~~~~~~w~~~----v~~iGKDii~f 334 (616)
T PLN02224 265 LRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNL------ETAVSFGWPAS----LHLIGKDILRF 334 (616)
T ss_pred CCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhccccccccc------chhhccCCCcc----eEEEeeccccc
Confidence 999999998547999999999999999999999999988765433221 01134467643 99999999999
Q ss_pred hHhHHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhh
Q psy2393 324 HILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFIS 403 (576)
Q Consensus 324 h~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~ 403 (576)
|+++|||+++++|+++|+.+++|||++++|+|||||+||+|+|.++++. ||+|++||||++.++ ...|.+|+++.+.+
T Consensus 335 H~i~wpa~l~~~g~~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~~-ygaD~~R~yLl~~~p-~~~d~~fs~~~~~~ 412 (616)
T PLN02224 335 HAVYWPAMLMSAGLELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQK-FGPDAVRYFFLREVE-FGNDGDYSEDRFIK 412 (616)
T ss_pred HHHHHHHHHHHCCCCCCcEEEecccEecCCccccccCCccCCHHHHHHH-cCcHHHHHHHHhcCC-CcCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999865 45888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-c-c-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy2393 404 CVNSDLIGKYINIASRSSSFIEKYFKGYLNMK-W-V-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIF 480 (576)
Q Consensus 404 ~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~-~-~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y 480 (576)
..|+++++.++|+++|+..++.+++++.++.. . . .| .++++.+.++.+.+.++|+++++++|++.++++++.+|+|
T Consensus 413 ~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d-~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Y 491 (616)
T PLN02224 413 IVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEG-VPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTY 491 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcccccccc-HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877765542 1 1 25 8999999999999999999999999999999999999999
Q ss_pred hhhcCccccccCcc-cHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc-----ccccccc-cCCCCCcccC
Q psy2393 481 FDQNKPWKLAKNNI-YHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP-----LQWINIF-TPLTQNHKIN 553 (576)
Q Consensus 481 ~~~~k~~~~~~~~~-~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~-----~~~~~~~-~~~~~g~~~~ 553 (576)
++..+||.+.+++. ...++.++++++++++++++++|+||||++||+||+.||.+. ..|.... ..+.+|+.++
T Consensus 492 i~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~~~~~~~~~~~~~~~~~~~~g~~i~ 571 (616)
T PLN02224 492 MDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQFNSITWSDTKWGGLKGGQVME 571 (616)
T ss_pred HHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCCCcccccccchhhhccccCCCCCCCC
Confidence 99999998755432 234566778889999999999999999999999999999753 2454321 2355699999
Q ss_pred CCCCCccCCChHHHHHHHh
Q psy2393 554 KYRHLMTRVDKNIVDNLLK 572 (576)
Q Consensus 554 ~~~~lf~r~d~~~~~~~~~ 572 (576)
++++||+||++++++++.|
T Consensus 572 ~~~~Lf~ri~~~~~~~~~~ 590 (616)
T PLN02224 572 QASPVFARIELNPEKEEDE 590 (616)
T ss_pred CCCCCCCCcCcchHHHHHH
Confidence 9999999999877765443
|
|
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-97 Score=822.96 Aligned_cols=504 Identities=27% Similarity=0.491 Sum_probs=453.3
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
++++||+|+|||||++||||+++++++|+++||+|++| ++|.|++|+|+||+||+.+|++.|.+|+++++++.+.
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G-----~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~ 78 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQG-----YDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAG 78 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcC-----CceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcc
Q psy2393 92 RKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFC 171 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c 171 (576)
|+++|++|||++|.|++|+++.|...++++|.+|+ ++|+||+++..++||+.|++||++++
T Consensus 79 fk~~l~~lgI~~D~f~rTt~~~h~~~v~~~~~~L~-~kG~IY~~~~~~~yc~~~~~~l~~~~------------------ 139 (648)
T PRK12267 79 FKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLY-EQGDIYKGEYEGWYCVSCETFFTESQ------------------ 139 (648)
T ss_pred HHHHHHHcCCCCCCCeeCCCHHHHHHHHHHHHHHH-HCCCEEEeeEEEeecCCCCccCChHH------------------
Confidence 99999999999999999999999999999999999 99999999999999999988888764
Q ss_pred ccCCCcCCCCccCC-CcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC---CCChhHHHHHH-HHHhhcCCCCC
Q psy2393 172 ECCSSIYTPTKLIN-PYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK---RLQPEIVNKIK-EWLEKDNKFND 246 (576)
Q Consensus 172 ~~cg~~~~~~~l~~-p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~~-~~l~~~~~~~d 246 (576)
+++ |+|++||++++++.++||||+| +++++.+.++ +++. .+|+..++.+. +|++ ++++|
T Consensus 140 -----------l~~~~~c~~cg~~~e~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~~~l~--~~l~D 203 (648)
T PRK12267 140 -----------LVDGGKCPDCGREVELVKEESYFFRM--SKYQDRLLEY-YEENPDFIQPESRKNEMINNFIK--PGLED 203 (648)
T ss_pred -----------hccCCcCCCCCCcCeEEecceEEEEc--HHHHHHHHHH-HhhCCcccCCHHHHHHHHHHHhh--CCCCC
Confidence 344 6778888999999999999999 9999999999 7653 35777888888 9999 88999
Q ss_pred cccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHh
Q psy2393 247 WDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 247 w~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~ 326 (576)
|||||++..||+|+|.++++++||||||+++|++..+. ....| .+|.+|||.+ +|++|+||++||++
T Consensus 204 ~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~~~-~~~~~--------~~~~~~wp~~----~~~~GkDii~fH~i 270 (648)
T PRK12267 204 LSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITALGY-GSDDD--------ELFKKFWPAD----VHLVGKDILRFHAI 270 (648)
T ss_pred cccCCCCCCcceECCCCCCCEEEEcccchHHHHHHcCC-CCCCc--------hHHHhhcccc----eEEEeeeecchhHH
Confidence 99999975799999999999999999999999998752 22222 4688899754 99999999999999
Q ss_pred HHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhh
Q psy2393 327 FWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406 (576)
Q Consensus 327 ~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~ 406 (576)
+||++++++|+++|+.+++|||++++|+|||||+||+|+|.++++. ||+|++|||+++.++.. .|.+|+++.+.+..|
T Consensus 271 ~wpa~l~~~~~~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l~~-ygaD~lR~~L~~~~~~~-~D~~fs~~~~~~~~n 348 (648)
T PRK12267 271 YWPIMLMALGLPLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVDR-YGLDALRYYLLREVPFG-SDGDFSPEALVERIN 348 (648)
T ss_pred HHHHHHHhCCCCCCcEEEecceEEECCceecccCCcccCHHHHHHH-cCCcHHHHHHHhcCCCC-CCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999876654 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCC--cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGYLNM--KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~~~~--~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
+++.++++|+++|+.+++.+++++.+|. .+.. | .++++.+..+.+.+.++|++++++.|++.+++|+..+|+|++.
T Consensus 349 ~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D-~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~ 427 (648)
T PRK12267 349 SDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFD-EELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDE 427 (648)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998877777663 2222 5 9999999999999999999999999999999999999999999
Q ss_pred cCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc--ccccccc--cCCCCCcccCCCCCCc
Q psy2393 484 NKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP--LQWINIF--TPLTQNHKINKYRHLM 559 (576)
Q Consensus 484 ~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~--~~~~~~~--~~~~~g~~~~~~~~lf 559 (576)
.+||...+++....++++++++++++++.++++|+||||++|++||+.||.+. ..|..+. ..+.+||.++++++||
T Consensus 428 ~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~g~~~~~~~~lf 507 (648)
T PRK12267 428 TAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGLEEELTSWESLLEWGGLPAGTKVAKGEPLF 507 (648)
T ss_pred CCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCCCccccchhhhhhhccccCCCccCCCCCCc
Confidence 99998765433456678889999999999999999999999999999999863 4564432 3356799999999999
Q ss_pred cCCChH-HHHHHH
Q psy2393 560 TRVDKN-IVDNLL 571 (576)
Q Consensus 560 ~r~d~~-~~~~~~ 571 (576)
+||+.+ ++++..
T Consensus 508 ~k~~~~~~~~~~~ 520 (648)
T PRK12267 508 PRIDVEEEIAYIK 520 (648)
T ss_pred CCCCcHHHHHHHH
Confidence 999975 564433
|
|
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-90 Score=753.23 Aligned_cols=498 Identities=27% Similarity=0.491 Sum_probs=440.9
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
++++|++|||||||++||||+|+++.+|+++||+|++| ++|.+++|+||||+||+.+|++.|+++.++++++.+.
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G-----~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~ 75 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRG-----YDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAA 75 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcC-----CcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcc
Q psy2393 92 RKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFC 171 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c 171 (576)
|+++|++|||++|.|++|+++.|.+.++++|.+|. ++|++|++...+|||+.|+++++++++
T Consensus 76 ~~~~l~~l~I~~D~~~~t~~~~~~~~v~~~~~~L~-~~G~iY~~~~~~~~~~~~~~~l~~~~l----------------- 137 (511)
T PRK11893 76 FKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLL-ANGDIYLGKYEGWYCVRCEEFYTESEL----------------- 137 (511)
T ss_pred HHHHHHHhCCCcCCceeCCCHHHHHHHHHHHHHHH-HCCCEEEeeeeeeccccccccCCHHHh-----------------
Confidence 99999999999999999999999999999999999 999999999999999888888886543
Q ss_pred ccCCCcCCCCccCC--CcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC--C-CCChhHHHHHHHHHhhcCCCCC
Q psy2393 172 ECCSSIYTPTKLIN--PYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--K-RLQPEIVNKIKEWLEKDNKFND 246 (576)
Q Consensus 172 ~~cg~~~~~~~l~~--p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~d 246 (576)
++ |+|++||++++++.++|||++| +.+++.+.++ +++ . .+|+..++.+.+|++ ++++|
T Consensus 138 ------------~~~~p~~~~~~~~~~~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~~l~--~~~~D 200 (511)
T PRK11893 138 ------------IEDGYRCPPTGAPVEWVEEESYFFRL--SKYQDKLLEL-YEANPDFIQPASRRNEVISFVK--SGLKD 200 (511)
T ss_pred ------------cCCCCCCCCCCCcceEEecCeEEEEc--HHHHHHHHHH-HHhCCCccCCHHHHHHHHHHHH--CCCCC
Confidence 33 7799999999999999999999 9999999999 655 2 357778889999998 78999
Q ss_pred ccccc-CCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhH
Q psy2393 247 WDISR-DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHI 325 (576)
Q Consensus 247 w~isR-~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~ 325 (576)
||||| ++ +||+|+|+++++++|||||+.++|++..+......+ . .+++..+|+.+ +|++|+|+++||+
T Consensus 201 ~~isR~~~-~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~~~~~----~--~~~~~~~~~~D----~~~~G~D~~~~h~ 269 (511)
T PRK11893 201 LSISRTNF-DWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDEEL----L--AELFNKYWPAD----VHLIGKDILRFHA 269 (511)
T ss_pred cccCCCCC-CCCccCCCCCCceEEEEecCcHHHHhHhcccccccc----c--hhHHHhcCCCc----ceEecccccccch
Confidence 99999 87 999999999999999999999999987543111110 0 02477788743 8999999999999
Q ss_pred hHHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhh
Q psy2393 326 LFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCV 405 (576)
Q Consensus 326 ~~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~ 405 (576)
.+|+|++++++.+.|+++++||||+++|+|||||+||+|++.|++++ ||+|++|||+++.++ ...|++|+++.+....
T Consensus 270 ~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~~-~g~DalR~~ll~~~~-~~~d~~Fs~~~~~~~~ 347 (511)
T PRK11893 270 VYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDE-YGVDAVRYFLLREIP-FGQDGDFSREAFINRI 347 (511)
T ss_pred hHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCcEEcHHHHHHH-cCcHHHHHHHHhcCC-CCcCCCCCHHHHHHHH
Confidence 99999999988889999999999999999999999999999999999 999999999999754 4578999999998888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCC--cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q psy2393 406 NSDLIGKYINIASRSSSFIEKYFKGYLNM--KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482 (576)
Q Consensus 406 ~~~~~~~~~n~~~R~~~~~~~~~~~~~~~--~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~ 482 (576)
|+++.++++|+++|+.+++.+..++.+|. .+.. | .++++.+..+.+.+.++|++++++.|++.|++|++.+|.|++
T Consensus 348 ~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d-~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~ 426 (511)
T PRK11893 348 NADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEAD-EALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYID 426 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999988765544443 2222 5 899999999999999999999999999999999999999999
Q ss_pred hcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc-c--ccccc-ccCCCCCcccCCCCCC
Q psy2393 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP-L--QWINI-FTPLTQNHKINKYRHL 558 (576)
Q Consensus 483 ~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~-~--~~~~~-~~~~~~g~~~~~~~~l 558 (576)
.++||...++ ...++++++.++.++++.++++|+||||++||+||+.||.+. . .|+.+ ...+.+|+.++.+++|
T Consensus 427 ~~~pw~~~~~--~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 504 (511)
T PRK11893 427 EQAPWSLAKT--DPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDENRDFAALSWGRLAPGTTLPKPEPI 504 (511)
T ss_pred hCCChhhhcC--CHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCCCcccccchhhhhcccCCCCCCCCCCCCC
Confidence 9999976543 244678889999999999999999999999999999999752 2 34422 2446679999999999
Q ss_pred ccCCChH
Q psy2393 559 MTRVDKN 565 (576)
Q Consensus 559 f~r~d~~ 565 (576)
|+||+.+
T Consensus 505 f~~~~~~ 511 (511)
T PRK11893 505 FPRLEEE 511 (511)
T ss_pred ccCCCCC
Confidence 9999864
|
|
| >KOG1247|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-89 Score=666.71 Aligned_cols=539 Identities=24% Similarity=0.468 Sum_probs=495.3
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhh-HHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHH
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIME-YIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFIN 86 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~-~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~ 86 (576)
.++.++++|+.+.||+|..+|+|++-+ .+.+||++||.+.+| ++..|++|+|++|++++.+|.+.|++|+++|+
T Consensus 10 ~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~-----~~~~yicGTDEYgtatetkaleeg~tP~elcd 84 (567)
T KOG1247|consen 10 APNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRG-----PNTLYICGTDEYGTATETKALEEGLTPQELCD 84 (567)
T ss_pred CCCccceeeecccceecccccccceeeEEeehhhhcccccCCC-----CceEEeccccccchhhHHHHHHccCCHHHHHH
Confidence 346678999999999999999999995 889999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCC
Q psy2393 87 NISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQ 166 (576)
Q Consensus 87 ~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~ 166 (576)
+|+..++..++.++|++|.|.+|+.+...+.+|.+|.+|+ ++|++-+....+.||..|+++|++++|+|+||.|+..++
T Consensus 85 Kyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~-~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~A 163 (567)
T KOG1247|consen 85 KYHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLY-DNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDA 163 (567)
T ss_pred hcchhHHHHHHhhcccccccCcccCcchhHHHHHHhhchh-hcCCcccceeeeEEehhhcccccchhhhccCCCCCCccc
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC----CCCChhHHHHHHHHHhhcC
Q psy2393 167 YGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD----KRLQPEIVNKIKEWLEKDN 242 (576)
Q Consensus 167 ~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~l~~~~ 242 (576)
+|++|++||..+.+.++++|+|..|....+.+.+.+.|++| +++++.+.+| +++ ..|++++++..+.|++ .
T Consensus 164 RGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L--~kl~~~lee~-~~~~~~~~~WS~Na~~it~sWlk--~ 238 (567)
T KOG1247|consen 164 RGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSL--DKLEPRLEEW-LRRTLVEGDWSQNAQNITRSWLK--D 238 (567)
T ss_pred cchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEh--HHhHHHHHHH-HHhccccCCCccchHHHHHHHHH--c
Confidence 99999999999999999999999999999999999999999 9999999999 654 2699999999999999 9
Q ss_pred CCCCcccccCCCCCCeecCC--CCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccC-CCcceEEEeeec
Q psy2393 243 KFNDWDISRDAPYFGIKIPN--TLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISS-PNTEQYHFIGKD 319 (576)
Q Consensus 243 ~~~dw~isR~~~~WG~~iP~--~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~-~~~~~i~~~G~D 319 (576)
|+++.||+|+- .||+|+|- .+++|+||||||++||++.+..+. ++|.+||.+ ..+++++|+|+|
T Consensus 239 gl~pRCiTRDL-kWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt------------~ew~kWwknpE~v~LyqFmgKD 305 (567)
T KOG1247|consen 239 GLKPRCITRDL-KWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYT------------DEWEKWWKNPENVELYQFMGKD 305 (567)
T ss_pred ccccccccccc-ccCCCcChhhhcccEEEEEEcCcceEEEeehhhh------------HHHHHHhcCHhhhhHHHHhccC
Confidence 99999999998 99999995 689999999999999999887665 578889943 346789999999
Q ss_pred CcchhHhHHHHHHHhcCCCCC--cEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccc
Q psy2393 320 IFYFHILFWPAILKFSGRKLP--NNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFN 397 (576)
Q Consensus 320 ~~~fh~~~~~a~l~~~~~~~p--~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs 397 (576)
++.||++++|+++.+.+...+ +++.+.+.++.+..|+|||+|..|...++-+.|++++..||||++.+|+.. |..||
T Consensus 306 NVpFHtviFP~s~lgt~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEss-Ds~Fs 384 (567)
T KOG1247|consen 306 NVPFHTVIFPCSQLGTEENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESS-DSAFS 384 (567)
T ss_pred CCcceeeecchhhhcCCCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCccc-CCcCc
Confidence 999999999999988876655 688888999999999999999999999999999999999999999999874 78999
Q ss_pred hhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC-cccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2393 398 SQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM-KWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNF 476 (576)
Q Consensus 398 ~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~ 476 (576)
|+++....|++++++++|+++|+.+++...+++.+|+ .+..++..+++.++.+..+..++||.-..+++++.++++...
T Consensus 385 w~df~~k~nseLl~NLGNFvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~ 464 (567)
T KOG1247|consen 385 WDDFVLKVNSELLNNLGNFVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRR 464 (567)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999989998887 333334899999999999999999999999999999999999
Q ss_pred HHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcccc-cccccCCCCCcccCCC
Q psy2393 477 INIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQW-INIFTPLTQNHKINKY 555 (576)
Q Consensus 477 ~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~~~-~~~~~~~~~g~~~~~~ 555 (576)
.|.|++.++.++...+ ++.++..+..+.++++..++.+|+||||.++.+|.++|+++.... +.....+++||+|+++
T Consensus 465 GNqylQ~~~~~k~~~~--~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~~~~~~~~~~~l~~gH~ig~~ 542 (567)
T KOG1247|consen 465 GNQYLQENTDNKLYEE--SRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPETLFPDRFICRLLAGHRIGTP 542 (567)
T ss_pred hhHHHhcccccchhhh--cccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCccccCCCccceeecCcCccCCc
Confidence 9999999987655433 345666777788899999999999999999999999999986443 2333457889999999
Q ss_pred CCCccCCChHHHHHHHhc
Q psy2393 556 RHLMTRVDKNIVDNLLKN 573 (576)
Q Consensus 556 ~~lf~r~d~~~~~~~~~~ 573 (576)
+|||+|||.++|+++.+.
T Consensus 543 ~pLFq~l~~~qiee~r~k 560 (567)
T KOG1247|consen 543 SPLFQKLDEDQIEEWRAK 560 (567)
T ss_pred cHHHHhcCHHHHHHHHHh
Confidence 999999999999998764
|
|
| >PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-90 Score=716.61 Aligned_cols=388 Identities=36% Similarity=0.709 Sum_probs=342.4
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
|+||+|+|||||+|||||+.+++.+|+++||+|++| ++|.+++|+|+||+||+.+|+++|++|+++|+++++.|+
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G-----~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~ 75 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRG-----HDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFK 75 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT------EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcc-----cceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcccc
Q psy2393 94 KYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCEC 173 (576)
Q Consensus 94 ~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~ 173 (576)
+.|+++||++|.|++|+++.|.+.++++|.+|+ ++|+||+++..+|||+.|++|+++++|+|+||.|+...++|+.|+.
T Consensus 76 ~~~~~~~I~~D~F~rTt~~~h~~~v~~i~~~L~-~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~ 154 (391)
T PF09334_consen 76 ELLEALNISYDRFIRTTDDRHKEFVQEIFKRLY-DNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCEN 154 (391)
T ss_dssp HHHHHTT---SEEEETTSHHHHHHHHHHHHHHH-HTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETT
T ss_pred HHHHHcCCCCcceeCCCCHHHHHHHHHHHHHHH-hcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccC
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC--CCChhHHHHHHHHHhhcCCCCCccccc
Q psy2393 174 CSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK--RLQPEIVNKIKEWLEKDNKFNDWDISR 251 (576)
Q Consensus 174 cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~dw~isR 251 (576)
||..+++++|++|+|..||++++++.+++|||+| +++++++.++ +++. .+|+..++.+.+|++ ++++||+|||
T Consensus 155 cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L--~~~~~~L~~~-l~~~~~~~~~~~~~~~~~~l~--~~L~d~~Is~ 229 (391)
T PF09334_consen 155 CGRPLEPEELINPVCKICGSPPEVREEENYFFKL--SKFRDQLREW-LESNPDFPPPRVREIVRNWLK--EGLPDLSISR 229 (391)
T ss_dssp TSSBEECCCSECEEETTTS-B-EEEEEEEEEE-G--GGGHHHHHHH-HHHSTTSSHHHHHHHHHHHHH--T----EE-EC
T ss_pred CCCCcccccccCCccccccccCccccceEEEEeh--HHhHHHHHHH-HhcCCCCCChhHHHHHHHHhh--cccCceeeec
Confidence 9999999999999999999999999999999999 9999999999 6554 377778899999999 8999999999
Q ss_pred CCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccc-cCCCcceEEEeeecCcchhHhHHHH
Q psy2393 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI-SSPNTEQYHFIGKDIFYFHILFWPA 330 (576)
Q Consensus 252 ~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w-~~~~~~~i~~~G~D~~~fh~~~~~a 330 (576)
.. .||||+|+++++++|||||++++|++.++...+..+.. ..+..+| .+++++++||+|+|+++||+++|||
T Consensus 230 ~~-~WGI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~------~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa 302 (391)
T PF09334_consen 230 PL-DWGIPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDP------EEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPA 302 (391)
T ss_dssp TT-SSSEEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTS------HHHHHHHCST--SEEEEEEEGGGHHHHHTHHHH
T ss_pred CC-CCcceeeccCCceEEEcchHHHHHHHHhcccccccccc------chhhhhccccCCceEEEEEccchhHHHHHHhHH
Confidence 88 99999999999999999999999999998776544432 6788999 5678899999999999999999999
Q ss_pred HHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHH
Q psy2393 331 ILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLI 410 (576)
Q Consensus 331 ~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~ 410 (576)
|+++.++++|+.+++|||++++|+|||||+||+|+|+|+++. ||+|++||||++.+|.. +|.+|+++.+.+.+|+++.
T Consensus 303 ~l~a~~~~lP~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~-~~~D~~R~~L~~~~~~~-~d~~F~~~~~~~~~n~~L~ 380 (391)
T PF09334_consen 303 MLLAAGLPLPRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLEE-YGADALRYYLAREGPEG-QDSDFSWEDFIERVNNELA 380 (391)
T ss_dssp HHHHCTB---SEEEEE--EEETTCCEETTTTESSBHHHHHHH-H-HHHHHHHHHHHSSTT-S-EEE-HHHHHHHHHHCCC
T ss_pred HHhcccCCCCCEEEeeeeEEECCeeccccCCcccCHHHHHHh-CChHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 99999999999987765 7789999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2393 411 GKYINIASRSS 421 (576)
Q Consensus 411 ~~~~n~~~R~~ 421 (576)
++++|+++|+.
T Consensus 381 ~~~gNl~~R~~ 391 (391)
T PF09334_consen 381 NTLGNLVNRVL 391 (391)
T ss_dssp CCHHHHHHHHH
T ss_pred HhhhhHHhccC
Confidence 99999999973
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A .... |
| >KOG0436|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-87 Score=649.69 Aligned_cols=508 Identities=26% Similarity=0.450 Sum_probs=440.8
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
.++++++++|..|||..+||||+++.+++|+++|+++.+| ..|.|.+|+|+||++|+..|+.+|.+|.++|++..
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg-----~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s 111 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKG-----KKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRIS 111 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcC-----CceEeecCCCccchhhhhhHhhcCCChHHHHhhhh
Confidence 4569999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceec-cCCCCCCCCCCC
Q psy2393 90 SNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKG-ECPICNAKDQYG 168 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~-~~p~c~~~~~~g 168 (576)
++|.+.++.+||.++.|+||++|.|+..|++++..+. ++|+||.+.+.+|||.+|++|+|++.|.. -||-
T Consensus 112 ~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~-knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~-------- 182 (578)
T KOG0436|consen 112 QSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVF-KNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPP-------- 182 (578)
T ss_pred HHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHH-hCCceeeecccceEeccccccCCHHHHhcCCCCC--------
Confidence 9999999999999999999999999999999999999 99999999999999999999999988753 2331
Q ss_pred CccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC--CCChh-HHHHHHHHHhhcCCCC
Q psy2393 169 DFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK--RLQPE-IVNKIKEWLEKDNKFN 245 (576)
Q Consensus 169 ~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~--~~~~~-~~~~~~~~l~~~~~~~ 245 (576)
| -+++..+|++|+++.+..|||.| ++++..+.++ ++++ ++.|. ..+.+.+||+ .|++
T Consensus 183 ------g---------k~vsmEsg~~vv~~kE~NY~FrL--Skfqk~l~d~-lrkNP~fvqPs~~~~qVl~~lk--tglp 242 (578)
T KOG0436|consen 183 ------G---------KVVSMESGNPVVWRKEDNYFFRL--SKFQKPLEDH-LRKNPRFVQPSYFHNQVLSWLK--TGLP 242 (578)
T ss_pred ------C---------ceeeeccCCceeEecccceeeeH--HhhhhHHHHH-HhcCCCccCchHHHHHHHHHHH--cCCC
Confidence 1 14566789999999999999999 9999999999 6654 55454 6799999999 9999
Q ss_pred Cccccc--CCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcch
Q psy2393 246 DWDISR--DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYF 323 (576)
Q Consensus 246 dw~isR--~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~f 323 (576)
|.+||| ++..||||+|+++.+++||||||+++|++.+++..++.. ....+..+||+. +|++|+|++.|
T Consensus 243 DlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nYiSvig~~~~~~N------~k~~ls~~wPat----~HvIGKDIlrF 312 (578)
T KOG0436|consen 243 DLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQQN------LKTALSFGWPAT----LHVIGKDILRF 312 (578)
T ss_pred cccccChhhhcccCCCCCCCCcceEEEeHHHHhhHHHhhcCCchhcc------ccceeecCCCce----eeehhhhhhhh
Confidence 999999 556899999999999999999999999999876433221 125677789875 99999999999
Q ss_pred hHhHHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhh
Q psy2393 324 HILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFIS 403 (576)
Q Consensus 324 h~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~ 403 (576)
|+++|||+|+++|+++|+.+++|||++.+|.|||||+||+++|.+++++ ||+|++||||+..+-.+ .|-||+.+++..
T Consensus 313 HavYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNvvdP~~l~~k-ygvD~vRyflLr~~~l~-~Dgdy~eekl~k 390 (578)
T KOG0436|consen 313 HAVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNVVDPFELVQK-YGVDAVRYFLLREGELG-NDGDYSEEKLIK 390 (578)
T ss_pred hhhhhHHHHHhcCCCCccEEEEeeeeeecceecchhhccccCHHHHHHH-hCccceeeEeeeccccC-CCCCccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 99999999999975444 677999999999
Q ss_pred hhhHHHHHHHHHHHHHHHH--HHHHHcCCC--CCCc-ccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy2393 404 CVNSDLIGKYINIASRSSS--FIEKYFKGY--LNMK-WVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFIN 478 (576)
Q Consensus 404 ~~~~~~~~~~~n~~~R~~~--~~~~~~~~~--~~~~-~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n 478 (576)
..|.+++++++|+++|+++ +..++.... .+.. ...++..|...+.++++.+.+.++++.+.++++.+....+..|
T Consensus 391 ~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~n 470 (578)
T KOG0436|consen 391 IVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGN 470 (578)
T ss_pred HHHHHHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhh
Confidence 9999999999999999987 444331111 1111 1112267899999999999999999999999999999999999
Q ss_pred HhhhhcCccccccCc-ccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc-----ccccccccCCC-----
Q psy2393 479 IFFDQNKPWKLAKNN-IYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP-----LQWINIFTPLT----- 547 (576)
Q Consensus 479 ~y~~~~k~~~~~~~~-~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~-----~~~~~~~~~~~----- 547 (576)
.|++..+||.+..+. .+...+..++..++++|++++++|.|++|.++.+++.+||.+. ..|+.++.+..
T Consensus 471 tlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk~qrsl~~~~~vf~~~~ygk~s 550 (578)
T KOG0436|consen 471 TLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSKDQRSLITWSPVFAPIEYGKES 550 (578)
T ss_pred hhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCChhhcccccchhccCchhccCCC
Confidence 999999999986543 2344567788889999999999999999999999999999974 24666554433
Q ss_pred --CCcccCCC-CCCccCCC
Q psy2393 548 --QNHKINKY-RHLMTRVD 563 (576)
Q Consensus 548 --~g~~~~~~-~~lf~r~d 563 (576)
.|+.+++. .+++.|++
T Consensus 551 ~~kgr~v~~kt~~~~~~~~ 569 (578)
T KOG0436|consen 551 DEKGRKVGKKTGKAKVKVV 569 (578)
T ss_pred CcccccCCcccccceeeee
Confidence 35666654 34566654
|
|
| >TIGR00422 valS valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-81 Score=717.72 Aligned_cols=488 Identities=21% Similarity=0.274 Sum_probs=408.1
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH----cCCCH----
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK----AGMTP---- 81 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~----~g~~~---- 81 (576)
++++|+|+.||||+||.|||||+++++++|+++||+||+| ++|++++|||+||+||+.++++ .|.++
T Consensus 31 ~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~ 105 (861)
T TIGR00422 31 NKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKG-----YNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLG 105 (861)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcC-----CcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCC
Confidence 4578999999999999999999999999999999999999 9999999999999999998876 35555
Q ss_pred --------HHHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccc
Q psy2393 82 --------KEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPD 151 (576)
Q Consensus 82 --------~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~ 151 (576)
.++++++...++++|++||+++| +.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|++
T Consensus 106 ~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~-~~GlIy~~~~~v~wcp~~~t~lsd 184 (861)
T TIGR00422 106 REEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLY-EKGLIYRGEYLVNWDPKLNTAISD 184 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHH-HCCCeeecCcccccCCCCCCcchH
Confidence 46789999999999999998665 6678999999999999999999 999999999999999999999999
Q ss_pred cceec---------------------------------------------------------------------------
Q psy2393 152 RYIKG--------------------------------------------------------------------------- 156 (576)
Q Consensus 152 ~~v~~--------------------------------------------------------------------------- 156 (576)
+||++
T Consensus 185 ~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~ 264 (861)
T TIGR00422 185 IEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEYVDME 264 (861)
T ss_pred hHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceeeecCCCCcc
Confidence 87521
Q ss_pred -------cCCCCCCC----------------CCCCCccccCCCcC------------------------CCCccCCCccc
Q psy2393 157 -------ECPICNAK----------------DQYGDFCECCSSIY------------------------TPTKLINPYSI 189 (576)
Q Consensus 157 -------~~p~c~~~----------------~~~g~~c~~cg~~~------------------------~~~~l~~p~~~ 189 (576)
.||.|+.. +..|..|++||.+- .+.+...|+||
T Consensus 265 ~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~ 344 (861)
T TIGR00422 265 FGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCW 344 (861)
T ss_pred cCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeC
Confidence 13443321 23466777777651 11233579999
Q ss_pred CCCCccEEeeecceeEecCchhhHHHHHHhhhcC--C-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC---C
Q psy2393 190 LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--K-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN---T 263 (576)
Q Consensus 190 ~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~---~ 263 (576)
|||++++++.++|||+++ +++++.+.++ ++. . ++|+..++.+.+|++ +++|||||||+ +||+|||. +
T Consensus 345 R~g~~ve~~~~~qWFi~~--~~~~~~~~~~-~~~~~i~~~P~~~~~~~~~wl~---~l~DW~ISRq~-~WG~piP~w~~~ 417 (861)
T TIGR00422 345 RSGTVVEPLLSKQWFVKV--EKLADKALEA-AEEGEIKFVPKRMEKRYLNWLR---NIKDWCISRQL-IWGHRIPVWYCK 417 (861)
T ss_pred CCCCEEEEEecCcceEec--HHHHHHHHHH-hhcCCeEEEChHHHHHHHHHHh---ccccceeeeec-ccCCcceEEEEC
Confidence 999999999999999999 9999999999 653 3 578889999999998 79999999999 99999996 2
Q ss_pred C----------------------------CcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEE
Q psy2393 264 L----------------------------EKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHF 315 (576)
Q Consensus 264 ~----------------------------~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~ 315 (576)
. ..|+++||||.++|++..+. ... ..+|+.|||.+ +++
T Consensus 418 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~-p~~---------~~~~~~~~P~d----~~~ 483 (861)
T TIGR00422 418 ECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGW-PDE---------TKDLKKFYPTD----LLV 483 (861)
T ss_pred CCCcEEeccchHHhhhhhccCCcccEEECCCcccceeccchHHHHHhCC-CCC---------hHHHhhcCCcc----eee
Confidence 1 35778899999999886542 111 13577788765 999
Q ss_pred eeecCcchhHhHHHHHHHhcCCCCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCC
Q psy2393 316 IGKDIFYFHILFWPAILKFSGRKLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIED 393 (576)
Q Consensus 316 ~G~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d 393 (576)
+|+||++||...++++..++..+.| +.+++||||++ +|+|||||+||+|+|.+++++ ||+|++|||+++..+.+ .|
T Consensus 484 ~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~-ygaDalR~~l~~~~~~~-~d 561 (861)
T TIGR00422 484 TGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEK-YGADALRFTLASLVTPG-DD 561 (861)
T ss_pred cchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHH-hChHHHHHHHHhCCCCC-CC
Confidence 9999999999998877777655666 99999999998 999999999999999999999 99999999999875544 78
Q ss_pred cccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC---ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2393 394 IDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM---KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYI 469 (576)
Q Consensus 394 ~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~---~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~ 469 (576)
++|+++.+... .+++++++|+. |......+... .++. ... .| +|++++++.+.+.+.++|++|+|+.|++.
T Consensus 562 ~~f~~~~~~~~--~~~~nkl~N~~-rf~~~~~~~~~-~~~~~~~~~~~~D-~wil~~l~~~~~~v~~~~e~~~f~~A~~~ 636 (861)
T TIGR00422 562 INFDWKRVESA--RNFLNKLWNAS-RFVLMNLSDDL-ELSGGEEKLSLAD-RWILSKLNRTIKEVRKALDKYRFAEAAKA 636 (861)
T ss_pred ceecHHHHHHH--HHHHHHHHHHH-HHHHhcccccc-ccccccccCCHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999987765 55899999954 54443222211 1211 122 25 99999999999999999999999999999
Q ss_pred HHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 470 VIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 470 l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
|++|+ +++|+|++.+|||.+.++ ......+..++..+|..+++||+|||||+||+||+.|+.
T Consensus 637 l~~f~~~~~~n~Yie~~k~~~~~~~---~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~ 700 (861)
T TIGR00422 637 LYEFIWNDFCDWYIELVKYRLYNGN---EAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKE 700 (861)
T ss_pred HHHHHHHHHHHHHHHHhHHHHcCCC---cHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCcc
Confidence 99997 899999999999986543 123445677888999999999999999999999999985
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. |
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-80 Score=708.95 Aligned_cols=486 Identities=18% Similarity=0.245 Sum_probs=392.8
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-----cCCCH--
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-----AGMTP-- 81 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-----~g~~~-- 81 (576)
+++++|+|+.||||+||.|||||+++++++|+++||+||+| ++|+|++|||+||++++.++++ .|.++
T Consensus 45 ~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~ 119 (1052)
T PRK14900 45 RTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSG-----FNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHD 119 (1052)
T ss_pred CCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcC-----CcccCCCCCCccchHHHHHHHHHhhhccCCChhh
Confidence 45678999999999999999999999999999999999999 9999999999999999987765 23333
Q ss_pred ----------HHHHHHHHHHHHHHHhhcCcc--ccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 82 ----------KEFINNISSNRKKYLDGFYIK--FDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 82 ----------~~~~~~~~~~~~~~l~~lgi~--~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
.++++++.+.+.++|++||++ |++.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|
T Consensus 120 ~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~-~~Gliyr~~~~v~wcp~~~T~L 198 (1052)
T PRK14900 120 LGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLH-EEGLIYREKKLINWCPDCRTAL 198 (1052)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHH-HCCCEEeccceeccCCCCCCCc
Confidence 346789999999999999985 558888999999999999999999 9999999999999999999999
Q ss_pred cccceeccC--------------------------C----CCC----CC--------------------------C----
Q psy2393 150 PDRYIKGEC--------------------------P----ICN----AK--------------------------D---- 165 (576)
Q Consensus 150 ~~~~v~~~~--------------------------p----~c~----~~--------------------------~---- 165 (576)
++.||++.. | .|. .+ +
T Consensus 199 sd~Ev~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~v 278 (1052)
T PRK14900 199 SDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILV 278 (1052)
T ss_pred cHHHhcccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEeccccc
Confidence 999997421 1 000 00 0
Q ss_pred --CCCCccc--------------------------cCCCcCCC-------------------------------CccCCC
Q psy2393 166 --QYGDFCE--------------------------CCSSIYTP-------------------------------TKLINP 186 (576)
Q Consensus 166 --~~g~~c~--------------------------~cg~~~~~-------------------------------~~l~~p 186 (576)
.+|..|. ..|++.+. -+...|
T Consensus 279 d~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~ 358 (1052)
T PRK14900 279 DPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLG 358 (1052)
T ss_pred CcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCc
Confidence 0121111 11221110 011259
Q ss_pred cccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC--C-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCC
Q psy2393 187 YSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--K-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNT 263 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~ 263 (576)
+||||+++++++.++||||++ +.+++.+.++ +++ . ++|+..++.+.+||+ +++|||||||+ +||+|||..
T Consensus 359 ~c~R~~~~ie~~~s~qWFi~l--~~~k~~~~~~-v~~~~~~~~P~~~~~~~~~wl~---~l~DW~ISRqr-~WG~PIP~w 431 (1052)
T PRK14900 359 RCQRSATILEPLLSDQWYVRI--EPLARPAIEA-VEQGRTRFIPEQWTNTYMAWMR---NIHDWCISRQL-WWGHQIPAW 431 (1052)
T ss_pred eeCCCCceEEEEeccceeeeh--HHHHHHHHHH-HhcCCcEEEChHHHHHHHHHHh---cCccceEEeec-CCCceeCeE
Confidence 999999999999999999999 9999999999 754 3 578889999999998 89999999999 999999962
Q ss_pred ---------------------------CCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEe
Q psy2393 264 ---------------------------LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI 316 (576)
Q Consensus 264 ---------------------------~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~ 316 (576)
+.+++||||||.++|++..+ +... ..+|+.|||.+ ++++
T Consensus 432 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g-~p~~---------~~~~~~~~P~d----~~~~ 497 (1052)
T PRK14900 432 YCPDGHVTVARETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMG-WPEQ---------TDTLRTFYPTS----VMET 497 (1052)
T ss_pred EcCCCcEEecccccccccccCccceecCCceEEEEEcCChHHHHHHc-CCCc---------hHHHHhhCCch----hhcc
Confidence 24899999999999988764 2211 13577888754 9999
Q ss_pred eecCcchhHhHHHHHHHhcC----CCCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCC
Q psy2393 317 GKDIFYFHILFWPAILKFSG----RKLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNK 390 (576)
Q Consensus 317 G~D~~~fh~~~~~a~l~~~~----~~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~ 390 (576)
|+||++| |++.++.++ ...| +.+++||||++ +|+|||||+||+|+|.+++++ ||+|++||||++..+.+
T Consensus 498 G~Dii~~----W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~-yGaDalR~~L~~~~~~g 572 (1052)
T PRK14900 498 GHDIIFF----WVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQ-YGADALRFTLAALTAQG 572 (1052)
T ss_pred cccHHhH----HHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHH-hCcHHHHHHHHhcCCCC
Confidence 9999976 455444433 2455 89999999999 999999999999999999999 99999999999875555
Q ss_pred CCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHc--CCCCCC--ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy2393 391 IEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYF--KGYLNM--KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNK 465 (576)
Q Consensus 391 ~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~--~~~~~~--~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~ 465 (576)
.|++|+++.+... .+++++++|+ .|...+..+.+ ++..+. ... .| +|+++.+..+.+.+.++|++|+|+.
T Consensus 573 -~D~~fs~~~l~~~--~~f~nkl~N~-~R~~~~~~~~~~~~~~~~~~~~~~~~D-~wils~l~~~i~~v~~~~e~y~f~~ 647 (1052)
T PRK14900 573 -RDIKLAKERIEGY--RAFANKLWNA-SRFALMNLSGYQERGEDPARLARTPAD-RWILARLQRAVNETVEALEAFRFND 647 (1052)
T ss_pred -CCCcccHHHHHHH--HHHHHHHHHH-HHHHHHhhhccCcccccccccccCHHH-HHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 7899999987443 5699999995 57665433332 122221 122 25 9999999999999999999999999
Q ss_pred HHHHHHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 466 VLYIVIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 466 ~~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
+++.|++|+ +++|+|++..+++.+..+ ......+..++..+|+.+++||+|||||+||+||+.|+.
T Consensus 648 A~~~i~~f~~~~~~n~Yie~~k~~l~~~~---~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~ 715 (1052)
T PRK14900 648 AANAVYAFVWHELCDWYIELAKEALASED---PEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRA 715 (1052)
T ss_pred HHHHHHHHHHHhhhHHHHHhccHhhccCC---HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhcc
Confidence 999999997 799999999998765432 122344567788899999999999999999999999974
|
|
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-80 Score=666.57 Aligned_cols=488 Identities=21% Similarity=0.306 Sum_probs=392.5
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc----CCCH------
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA----GMTP------ 81 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~----g~~~------ 81 (576)
++|.|..||||+||.||||||.++++.|+++||.||+| ++|+|++|+|++|++++.+++++ |.+.
T Consensus 33 ~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G-----~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe 107 (877)
T COG0525 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRG-----YNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGRE 107 (877)
T ss_pred CCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCC-----CeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHH
Confidence 56999999999999999999999999999999999999 99999999999999999988862 5543
Q ss_pred ------HHHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccc
Q psy2393 82 ------KEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRY 153 (576)
Q Consensus 82 ------~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~ 153 (576)
.++.+++...|.++|++||+++| +.+.|+|+.+.+.|+++|.+|+ ++|+||+++..++|||.|+|+||+.|
T Consensus 108 ~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly-~~GlIYr~~~lVNWcP~~~TAiSd~E 186 (877)
T COG0525 108 EFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLY-EKGLIYRGERLVNWCPKCRTAISDIE 186 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHH-HCCceeecCCcccCCCccccchhhhh
Confidence 35678889999999999999654 7888999999999999999999 99999999999999999999999999
Q ss_pred eecc------------------------------------------------------CCCCCCC----------CCCCC
Q psy2393 154 IKGE------------------------------------------------------CPICNAK----------DQYGD 169 (576)
Q Consensus 154 v~~~------------------------------------------------------~p~c~~~----------~~~g~ 169 (576)
|++. .|.++.. ..+|.
T Consensus 187 Ve~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~VD~eFGT 266 (877)
T COG0525 187 VEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVDPEFGT 266 (877)
T ss_pred hccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeeeecCcccCCcCCC
Confidence 9741 1222211 01222
Q ss_pred ---------------------------------ccccCC-CcCC------------------------CCccCCCcccCC
Q psy2393 170 ---------------------------------FCECCS-SIYT------------------------PTKLINPYSILS 191 (576)
Q Consensus 170 ---------------------------------~c~~cg-~~~~------------------------~~~l~~p~~~~~ 191 (576)
.-++|+ .+-. +-...-|+|+||
T Consensus 267 G~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~ 346 (877)
T COG0525 267 GAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERC 346 (877)
T ss_pred ceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCC
Confidence 122332 2200 001124899999
Q ss_pred CCccEEeeecceeEecCchhhHHHHHHhhhc--CC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCC-----
Q psy2393 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIH--DK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNT----- 263 (576)
Q Consensus 192 ~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~----- 263 (576)
|+++++..++|||+++ ..+++.+.+. .+ .. ++|+...+...+|++ +++|||||||+ +||++||..
T Consensus 347 g~~IEp~ls~QWfVk~--~~la~~~l~~-~~~g~i~f~P~~~~~~~~~W~~---~i~DWcISRQl-wwGh~IPvWy~~~~ 419 (877)
T COG0525 347 GTPIEPLLSKQWFVKV--LELAKKALEA-VKDGKIKFVPERMEKRYEDWME---NIRDWCISRQL-WWGHRIPVWYCKEC 419 (877)
T ss_pred CceeeeeecceeeEEh--HhhHHHHHHH-HhcCCceEecHHHHHHHHHHHh---hCcCceeeeee-ecCcccceEEecCC
Confidence 9999999999999999 8899998888 55 33 678889999999998 88999999999 999999951
Q ss_pred --------------------------CCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEee
Q psy2393 264 --------------------------LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIG 317 (576)
Q Consensus 264 --------------------------~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G 317 (576)
+..|+++||++.++.++.++ |.++. .+++.|+|.+ +.+.|
T Consensus 420 g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlg-Wp~~t---------~~l~~fyPt~----llvtG 485 (877)
T COG0525 420 GNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLG-WPEET---------PDLKKFYPTD----LLVTG 485 (877)
T ss_pred CcEEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccC-CCCcc---------hHHHhcCCCc----ccccc
Confidence 12467789998888887765 22221 4566666654 88999
Q ss_pred ecCcchhHhHHHHHHHhcCCCCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcc
Q psy2393 318 KDIFYFHILFWPAILKFSGRKLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDID 395 (576)
Q Consensus 318 ~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~ 395 (576)
.|++|||...-..+.+.+..+.| +.++.||+|.+ +|+|||||+||||+|.+++++ ||+|||||++++.+..+ +|+.
T Consensus 486 ~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~-yGaDAlRf~la~~~~~G-~Di~ 563 (877)
T COG0525 486 HDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDK-YGADALRFTLASLASPG-RDIN 563 (877)
T ss_pred chhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHH-hChHHHHHHHHhccCCC-cccC
Confidence 99999976443222233334455 89999999999 999999999999999999999 99999999999975555 7899
Q ss_pred cchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCC-Cc-ccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy2393 396 FNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLN-MK-WVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQ 473 (576)
Q Consensus 396 fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~-~~-~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~ 473 (576)
|+++++... .+|++++||+.+.+...+.+......+ .. ...| +|++++|++..+.+++++++|+|..|.+.|++|
T Consensus 564 ~~~~~~~~~--rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~d-rWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F 640 (877)
T COG0525 564 FDEKRVEGY--RNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLAD-RWILSRLNETVKEVTEALDNYRFDEAARALYEF 640 (877)
T ss_pred cCHHHHHHH--HHHHHHHHhHHHHHHhcccccCcccccccccchHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999998776 679999999964443322111101111 11 1236 999999999999999999999999999999999
Q ss_pred H--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 474 T--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 474 ~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
+ .+|++|++..|+..+.. + ....++.+++..+|..+++||+|||||++|+||+.|...
T Consensus 641 ~W~~fcD~YlEl~K~~l~~~-~---~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~ 700 (877)
T COG0525 641 IWNDFCDWYLELAKPRLYGG-E---EEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT 700 (877)
T ss_pred hHHHHHHHHHHHhhhhhcCc-H---HHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC
Confidence 9 99999999999987765 1 122355677888999999999999999999999999874
|
|
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-79 Score=696.61 Aligned_cols=485 Identities=22% Similarity=0.287 Sum_probs=395.6
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-cCCCHH------
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-AGMTPK------ 82 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-~g~~~~------ 82 (576)
++++|+|+.|||||||.|||||+++++++|+++||+||+| ++|.+++|||+||+||+.+|++ .|.++.
T Consensus 36 ~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G-----~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~ 110 (800)
T PRK13208 36 RKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRG-----YNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREE 110 (800)
T ss_pred CCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCC-----CcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHH
Confidence 3578999999999999999999999999999999999999 9999999999999999999998 588766
Q ss_pred ------HHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccce
Q psy2393 83 ------EFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYI 154 (576)
Q Consensus 83 ------~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v 154 (576)
++++++.+.++++|++||+++| ++++|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|++++|
T Consensus 111 f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~-~~Gliy~~~~~v~wcp~~~t~Lsd~ev 189 (800)
T PRK13208 111 FIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLY-KKGLIYRAEAPVLWCPRCETAIAQAEV 189 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHH-HCCCeeecCcccccCCCCCCccchhhh
Confidence 5999999999999999999666 8999999999999999999999 999999999999999999999999987
Q ss_pred ec------------------------cCC----CCCC----C--------------------------------------
Q psy2393 155 KG------------------------ECP----ICNA----K-------------------------------------- 164 (576)
Q Consensus 155 ~~------------------------~~p----~c~~----~-------------------------------------- 164 (576)
++ +|| .|.+ +
T Consensus 190 ~~~~~~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~ 269 (800)
T PRK13208 190 EYREREGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGA 269 (800)
T ss_pred ccccccceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCccCCCCCcce
Confidence 42 344 1211 0
Q ss_pred ---CCCCCccc----------------cCCCcC-----------------------------CCCcc--CCCcccCCCCc
Q psy2393 165 ---DQYGDFCE----------------CCSSIY-----------------------------TPTKL--INPYSILSGTK 194 (576)
Q Consensus 165 ---~~~g~~c~----------------~cg~~~-----------------------------~~~~l--~~p~~~~~~~~ 194 (576)
..+++.|+ .+|++. ..+++ ..|+|||||++
T Consensus 270 V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~ 349 (800)
T PRK13208 270 VMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTP 349 (800)
T ss_pred EEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCE
Confidence 01222232 122221 11111 24999999999
Q ss_pred cEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCC-CcccccCCCCCCeecCC----C-----
Q psy2393 195 PIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFN-DWDISRDAPYFGIKIPN----T----- 263 (576)
Q Consensus 195 ~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-dw~isR~~~~WG~~iP~----~----- 263 (576)
++++.++|||+++ +++++.+.++ +++. ++|+..++++.+||+ +++ |||||||+ +||+|||. .
T Consensus 350 v~~~~~~qwfl~~--~~~~~~~~~~-~~~~~~~P~~~~~~~~~~l~---~~~~DW~ISRqr-~WG~pIP~~~~~~~g~~~ 422 (800)
T PRK13208 350 LEILVTRQWFIKV--LDLKEELLER-GKEINWYPEHMRVRLENWIE---GLNWDWCISRQR-YFGTPIPVWYCKDCGHPI 422 (800)
T ss_pred EEEeccceeeEeC--HHHHHHHHHh-hcCcEEECHHHHHHHHHHHH---hcCCCceeeecc-ccCCcceEEEeCCCCCee
Confidence 9999999999999 9999999999 7666 578889999999999 666 99999999 99999994 0
Q ss_pred -------------------------------CCcEEEEEeecccchhhhcchhhhhCCCCCccccc-ccccccccCCCcc
Q psy2393 264 -------------------------------LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNEL-RNFDEFISSPNTE 311 (576)
Q Consensus 264 -------------------------------~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~w~~~~~~ 311 (576)
+..++++|||+...+++..+. +.+ ..++.|||.+
T Consensus 423 ~~~~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~-----------~~~~~~~~~~~P~d--- 488 (800)
T PRK13208 423 LPDEEDLPVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGW-----------ERDEDLFEKVFPMD--- 488 (800)
T ss_pred cCchhhhccCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCC-----------CCChhhhhhcCCce---
Confidence 025788999988776654321 111 3567788764
Q ss_pred eEEEeeecCcchhHhHHHHHHHhcCCCCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCC
Q psy2393 312 QYHFIGKDIFYFHILFWPAILKFSGRKLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNN 389 (576)
Q Consensus 312 ~i~~~G~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~ 389 (576)
++++|+||+++|...+.++..++....| +.+++||||++ +|+|||||+||+|+|.+++++ ||+|++|||++.. +
T Consensus 489 -~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~-yg~D~lR~~l~~~--~ 564 (800)
T PRK13208 489 -LRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEK-YGADAVRYWAASA--R 564 (800)
T ss_pred -EEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHH-cCccHHHHHHhcC--C
Confidence 9999999999987776654444333334 89999999997 999999999999999999999 9999999999943 4
Q ss_pred CCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCC--Cccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2393 390 KIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLN--MKWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKV 466 (576)
Q Consensus 390 ~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~--~~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~ 466 (576)
...|++|+.+.+.. +++++++++|+++++. .+.+ ....+ .... .| +|+++++..+.+.+.++|++|+|+.|
T Consensus 565 ~~~d~~fs~~~~~~--~~~~l~kl~N~~r~~~-~~~~--~~~~~~~~~~~~~D-~~il~~l~~~i~~v~~~~e~~~f~~A 638 (800)
T PRK13208 565 LGSDTPFDEKQVKI--GRRLLTKLWNASRFVL-HFSA--DPEPDKAEVLEPLD-RWILAKLAKVVEKATEALENYDFAKA 638 (800)
T ss_pred CCCCceecHHHHHH--HHHHHHHHHHHHHHHH-hccc--ccccCccccCCHHH-HHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 56899999998754 5778999999965443 2211 01111 1122 25 99999999999999999999999999
Q ss_pred HHHHHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcC
Q psy2393 467 LYIVIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLN 533 (576)
Q Consensus 467 ~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~ 533 (576)
++.|++|+ .++|.|++.+|+|.+.++.. .....++.++.++++.++++|+|||||+||+||+.|+
T Consensus 639 ~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~--~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~ 705 (800)
T PRK13208 639 LEEIESFFWHVFCDDYLELVKSRAYGEDEE--EEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY 705 (800)
T ss_pred HHHHHHHHHHHhhHHHHHHhhHHhcCCCCc--HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC
Confidence 99999998 47999999999987654321 1244566788899999999999999999999999998
|
|
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-79 Score=699.20 Aligned_cols=486 Identities=20% Similarity=0.280 Sum_probs=390.1
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH----cCCCHHH--
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK----AGMTPKE-- 83 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~----~g~~~~~-- 83 (576)
.+++|+|+.||||+||.|||||+++++++|+++||+||+| ++|+|++|||+||++++.++++ .|.++.+
T Consensus 34 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G-----~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~ 108 (874)
T PRK05729 34 SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQG-----YNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLG 108 (874)
T ss_pred CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCC-----CcccCCCCCCccchhhHHHHHHHHHhcCCChHHCC
Confidence 3556999999999999999999999999999999999999 9999999999999998877654 3766554
Q ss_pred ----------HHHHHHHHHHHHHhhcCccc--cccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccc
Q psy2393 84 ----------FINNISSNRKKYLDGFYIKF--DNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPD 151 (576)
Q Consensus 84 ----------~~~~~~~~~~~~l~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~ 151 (576)
+++++.+.++++|++||+++ ++.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|++
T Consensus 109 re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~-~~GlIyr~~~~v~wcp~~~talsd 187 (874)
T PRK05729 109 REKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLY-EKGLIYRGKRLVNWDPKLQTALSD 187 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHH-HCCCEeecCcccccCCCCCCcchh
Confidence 58999999999999999855 57788999999999999999999 999999999999999999999999
Q ss_pred cceec------------------------------------------------------cCCCCCCC----------CCC
Q psy2393 152 RYIKG------------------------------------------------------ECPICNAK----------DQY 167 (576)
Q Consensus 152 ~~v~~------------------------------------------------------~~p~c~~~----------~~~ 167 (576)
+||++ .||.|+.. ..+
T Consensus 188 ~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~ 267 (874)
T PRK05729 188 LEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADEYVDPEF 267 (874)
T ss_pred hhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCCCCCeeeEecCccCCCCC
Confidence 99973 14444431 112
Q ss_pred ---------------------------------CCccccCCCcCC------------------------CCccCCCcccC
Q psy2393 168 ---------------------------------GDFCECCSSIYT------------------------PTKLINPYSIL 190 (576)
Q Consensus 168 ---------------------------------g~~c~~cg~~~~------------------------~~~l~~p~~~~ 190 (576)
|..+++||.+-. +.+...|+|||
T Consensus 268 GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R 347 (874)
T PRK05729 268 GTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDR 347 (874)
T ss_pred CCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCC
Confidence 333444544310 01223699999
Q ss_pred CCCccEEeeecceeEecCchhhHHHHHHhhhcC--C-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC--C-C
Q psy2393 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--K-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN--T-L 264 (576)
Q Consensus 191 ~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~--~-~ 264 (576)
||++++++.++|||+++ +++++.+.++ +++ . ++|+..++.+.+|++ +++|||||||+ +||+|||. . +
T Consensus 348 ~~~~i~~~~~~QWFi~~--~~~~~~~~~~-v~~~~i~~~P~~~~~~~~~wl~---~l~DWcISRq~-~WG~pIP~~~~~~ 420 (874)
T PRK05729 348 SGVVIEPYLSDQWFVKM--KPLAKPALEA-VENGEIKFVPERWEKTYFHWME---NIQDWCISRQL-WWGHRIPAWYDED 420 (874)
T ss_pred CCceEEEEecCcceEeh--HHHHHHHHHH-HhcCCcEEEChHHHHHHHHHHh---cCccceeeeec-ccCCcccEEEeCC
Confidence 99999999999999999 9999999999 643 2 579989999999998 79999999999 99999994 1 1
Q ss_pred ---------------------CcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcch
Q psy2393 265 ---------------------EKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYF 323 (576)
Q Consensus 265 ---------------------~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~f 323 (576)
..++++||++.+++++.++ +... ..+++.|||.+ ++++|+||++|
T Consensus 421 ~~~~v~~~~~~~~~~~~~~~~~DvlDtWfsS~l~~~~~lg-wp~~---------~~~~~~~~P~d----~~~~G~Dii~~ 486 (874)
T PRK05729 421 GEVYVGREEPEAREKALLTQDEDVLDTWFSSALWPFSTLG-WPEK---------TEDLKRFYPTS----VLVTGFDIIFF 486 (874)
T ss_pred CcEEeCCcccccccccCeEeCCceecceecCCccHHHHhC-CCCC---------cHHHHhcCCcc----cccccccccch
Confidence 2345667777777766543 1111 14577788765 99999999987
Q ss_pred hHhHHHHHHHhcCCCCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhH
Q psy2393 324 HILFWPAILKFSGRKLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSF 401 (576)
Q Consensus 324 h~~~~~a~l~~~~~~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~ 401 (576)
|.....++........| +.++.||+|++ +|+|||||+||+|+|.|++++ ||+|++|||+++.++. .+|++|+++.+
T Consensus 487 W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~-yGaDalR~~ll~~~~~-~~Di~fs~~~l 564 (874)
T PRK05729 487 WVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDK-YGADALRFTLAALASP-GRDIRFDEERV 564 (874)
T ss_pred HHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHH-hChHHHHHHHHhCCCC-CCCceeCHHHH
Confidence 53332211112223456 89999999997 999999999999999999999 9999999999987544 47899999987
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH-HHHcCCCCCC--cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--H
Q psy2393 402 ISCVNSDLIGKYINIASRSSSFI-EKYFKGYLNM--KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--N 475 (576)
Q Consensus 402 ~~~~~~~~~~~~~n~~~R~~~~~-~~~~~~~~~~--~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~ 475 (576)
... .+++++++|+. |...+. .+...+.++. .+.. | +|+++++..+.+.+.++|++|+|+.|++.|++|+ .
T Consensus 565 ~~~--~~~~nkl~N~~-Rf~~~~~~~~~~~~~~~~~~~~~~D-~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~ 640 (874)
T PRK05729 565 EGY--RNFANKLWNAS-RFVLMNLEGADVGELPDPEELSLAD-RWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNE 640 (874)
T ss_pred HHH--HHHHHHHHHHH-HHHHHhcccCCcccccccccCCHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 655 45899999975 544332 2211122221 1222 5 9999999999999999999999999999999998 7
Q ss_pred HHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 476 FINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 476 ~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
++|+|++.+|+|.+ .+ . .+.+..++..+++.+++||+|||||+||+||+.|+.
T Consensus 641 ~~~~Yle~~k~~l~-~~--~---~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~ 693 (874)
T PRK05729 641 FCDWYLELAKPVLQ-EA--A---KRATRATLAYVLEQILRLLHPFMPFITEELWQKLAP 693 (874)
T ss_pred HHHHHHHHHHHHhh-hh--H---HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhccc
Confidence 99999999999965 21 1 345667888999999999999999999999999984
|
|
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-80 Score=673.83 Aligned_cols=490 Identities=23% Similarity=0.308 Sum_probs=384.8
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-cCC-------
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-AGM------- 79 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-~g~------- 79 (576)
++++++|++++||||+||.+|||||.|.|++|++.||..|+| |+|.+++||||||+|||.++++ .|.
T Consensus 45 ~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G-----~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~ 119 (933)
T COG0060 45 NKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQG-----YDVPYVPGWDCHGLPIELKVEKKLGIGKKDIES 119 (933)
T ss_pred hCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccC-----CcCCCCCCCcCCCchHHHHHHHHhCCCcchhhh
Confidence 578899999999999999999999999999999999999999 9999999999999999988886 342
Q ss_pred --------CHHHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 80 --------TPKEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 80 --------~~~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
.|++++..+.+.+++++++||+ +|++.|.|+++.|.+.+.++|.+++ +||++|++..+++|||.|+|.|
T Consensus 120 ~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~-~kGllyrg~Kpv~wsp~c~TaL 198 (933)
T COG0060 120 FGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELY-EKGLLYRGYKPVPWSPRCETAL 198 (933)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHH-HCCCeecCCeeeeecCCCCcch
Confidence 3556778889999999999999 8899999999999999999999999 9999999999999999999999
Q ss_pred cccceec-----------------------------cCCCC---------------------------------------
Q psy2393 150 PDRYIKG-----------------------------ECPIC--------------------------------------- 161 (576)
Q Consensus 150 ~~~~v~~-----------------------------~~p~c--------------------------------------- 161 (576)
+++||++ |+|+.
T Consensus 199 AeaEvey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~ 278 (933)
T COG0060 199 AEAEVEYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKA 278 (933)
T ss_pred hhhhhcccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHc
Confidence 9999985 12210
Q ss_pred CCC-----------------------C---C--------------CCC-------------------------ccc--cC
Q psy2393 162 NAK-----------------------D---Q--------------YGD-------------------------FCE--CC 174 (576)
Q Consensus 162 ~~~-----------------------~---~--------------~g~-------------------------~c~--~c 174 (576)
+.+ . . .|. .|. .-
T Consensus 279 ~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~ 358 (933)
T COG0060 279 GVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDN 358 (933)
T ss_pred CCcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCC
Confidence 000 0 0 000 111 12
Q ss_pred CCcCCC------------Cc-------------------cCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC
Q psy2393 175 SSIYTP------------TK-------------------LINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD 223 (576)
Q Consensus 175 g~~~~~------------~~-------------------l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~ 223 (576)
|++.+. .+ -.+|+||||++|+++|.++|||+++ +++++.+++. +++
T Consensus 359 G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v--~~~r~~~l~~-i~~ 435 (933)
T COG0060 359 GRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSV--DKLRDKMLKE-INK 435 (933)
T ss_pred ccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEH--HHHHHHHHHH-Hhc
Confidence 222211 00 1269999999999999999999999 9999999966 556
Q ss_pred C-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCC----C----------------------------------
Q psy2393 224 K-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNT----L---------------------------------- 264 (576)
Q Consensus 224 ~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~----~---------------------------------- 264 (576)
+ ++|+...+++.+|++ +.+|||||||| +||+|||.. .
T Consensus 436 v~w~P~~~~~R~~~mve---~r~DW~ISRQR-~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel 511 (933)
T COG0060 436 VNWVPDWGKNRFGNMVE---NRPDWCISRQR-YWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDEL 511 (933)
T ss_pred ceEEChhHHHHHHHHHc---CCCcceeeccc-cCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhh
Confidence 5 568889999999998 99999999999 999999951 0
Q ss_pred --------------CcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCc--chhHhHH
Q psy2393 265 --------------EKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIF--YFHILFW 328 (576)
Q Consensus 265 --------------~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~--~fh~~~~ 328 (576)
..+++||||+...+.+..... . ...+...|.| ++..|.||. |||+.+-
T Consensus 512 ~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~~~---~--------~~~~~~~~aD-----~~lEGsDQ~RGWF~Ssl~ 575 (933)
T COG0060 512 LPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPR---E--------NLKFPALFAD-----FYLEGSDQTRGWFYSSLL 575 (933)
T ss_pred cCCCCCCcceeEecCcceEEEEcCCCCcccccCCc---c--------cccCccccCc-----EEEEeccccchhHHHHHH
Confidence 134556666654443322100 0 0111212211 788899998 6666553
Q ss_pred HHHHHhcCCCCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhh
Q psy2393 329 PAILKFSGRKLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406 (576)
Q Consensus 329 ~a~l~~~~~~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~ 406 (576)
.+ .++....| +.+++|||+++ +|+|||||+||+|+|.+++++ ||+|+||+|++++ ++..|+.||++.+ ...
T Consensus 576 ~s--~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~-yGADiLRLwv~ss--d~~~dl~~s~~il-~~~- 648 (933)
T COG0060 576 TS--TALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDK-YGADILRLWVASS--DYWEDLRFSDEIL-KQV- 648 (933)
T ss_pred HH--HHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHh-hCchheeeeeeec--CchhccccCHHHH-HHH-
Confidence 32 22222445 89999999999 999999999999999999999 9999999999998 5778999999974 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC--CC-CcccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHh
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGY--LN-MKWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINIF 480 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~--~~-~~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y 480 (576)
++.+++++|+++.+...+....... ++ +.+.. | +|++++++.+.+.+.++|++|+|+++++.|++|+ +++|+|
T Consensus 649 ~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~D-rwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Y 727 (933)
T COG0060 649 REVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELD-RWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWY 727 (933)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccccccchhhcchhH-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHH
Confidence 6679999999866555433211111 11 12222 6 9999999999999999999999999999999998 899999
Q ss_pred hhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 481 FDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 481 ~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
++..|++.+.+...+.. .+++..+|..+|..+.++||||+||+||+||+.|...
T Consensus 728 ld~~kdr~y~~~~~s~~-rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~ 781 (933)
T COG0060 728 LDIIKDRLYTEAADSPD-RRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGE 781 (933)
T ss_pred HHHHHHHhhhcCCCCHH-HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccC
Confidence 99999988866322222 2233456668999999999999999999999999765
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-78 Score=689.76 Aligned_cols=488 Identities=20% Similarity=0.313 Sum_probs=393.5
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH----cCCCH----
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK----AGMTP---- 81 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~----~g~~~---- 81 (576)
++++|+|+.||||+||.|||||+++++++|+++||+||+| ++|+|++|||+||+|++.++++ .|.++
T Consensus 86 ~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G-----~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~ 160 (958)
T PLN02943 86 GGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKG-----RPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLG 160 (958)
T ss_pred CCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcC-----CeeecCCCCCcccchhHHHHHHHHHHcCCChhhCC
Confidence 4567999999999999999999999999999999999999 9999999999999999987765 36543
Q ss_pred --------HHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccc
Q psy2393 82 --------KEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPD 151 (576)
Q Consensus 82 --------~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~ 151 (576)
.++++++.+.++++|++||+ +|++.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|++
T Consensus 161 re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~-~~Gliyr~~~~V~wcp~~~Tals~ 239 (958)
T PLN02943 161 RDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLH-EKGLIYQGSYMVNWSPNLQTAVSD 239 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHH-HCCCEEecCceeccCCCCCCCcCH
Confidence 34668899999999999999 5568999999999999999999999 999999999999999999999999
Q ss_pred cceecc--------------------------C-----------------------------CCC-CCC----------C
Q psy2393 152 RYIKGE--------------------------C-----------------------------PIC-NAK----------D 165 (576)
Q Consensus 152 ~~v~~~--------------------------~-----------------------------p~c-~~~----------~ 165 (576)
.||++. . |.. +.. .
T Consensus 240 ~Evey~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~ 319 (958)
T PLN02943 240 LEVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDK 319 (958)
T ss_pred HHhhcccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccC
Confidence 999741 0 110 100 0
Q ss_pred CCCC---------------------------------ccccCCCcC--------------------CCCccCCCcccCCC
Q psy2393 166 QYGD---------------------------------FCECCSSIY--------------------TPTKLINPYSILSG 192 (576)
Q Consensus 166 ~~g~---------------------------------~c~~cg~~~--------------------~~~~l~~p~~~~~~ 192 (576)
.+|. .-+.+|.+. ++.+...|+|||||
T Consensus 320 ~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~ 399 (958)
T PLN02943 320 DFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGG 399 (958)
T ss_pred CCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCC
Confidence 0111 111223220 01123469999999
Q ss_pred CccEEeeecceeEecCchhhHHHHHHhhhcC--C-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC------C
Q psy2393 193 TKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--K-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN------T 263 (576)
Q Consensus 193 ~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~------~ 263 (576)
++++++.++|||+++ +.+++.+.++ ++. . ++|+..++.+.+|++ +++|||||||+ +||+|||. +
T Consensus 400 ~~Ie~~~~~QWFi~~--~~l~~~~l~~-v~~~~i~~~P~~~~~~~~~wl~---~l~DWcISRQr-~WG~pIP~w~~~~~~ 472 (958)
T PLN02943 400 EVIEPLVSKQWFVTM--EPLAEKALKA-VENGELTIIPERFEKIYNHWLS---NIKDWCISRQL-WWGHRIPVWYIVGKD 472 (958)
T ss_pred cEeEEEeccceeEEH--HHHHHHHHHH-HhcCCcEEEChHHHHHHHHHHh---cCccceEEEec-CCCCccCceeccccC
Confidence 999999999999999 9999999999 653 3 578889999999998 99999999999 99999995 1
Q ss_pred ------------------------------CCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceE
Q psy2393 264 ------------------------------LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQY 313 (576)
Q Consensus 264 ------------------------------~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i 313 (576)
+.+|+|||||+.++|++.++ +.... ..+|+.|||.+ +
T Consensus 473 ~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lg-wp~~~--------~~~~~~~yP~d----l 539 (958)
T PLN02943 473 CEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLG-WPDVS--------AEDFKKFYPTT----V 539 (958)
T ss_pred CCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhcC-CCccC--------hHHHhccCCCe----E
Confidence 24789999999999988765 22111 14677788764 9
Q ss_pred EEeeecCcchhHhHHHHHHHhcCC----CCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhC
Q psy2393 314 HFIGKDIFYFHILFWPAILKFSGR----KLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKL 387 (576)
Q Consensus 314 ~~~G~D~~~fh~~~~~a~l~~~~~----~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~ 387 (576)
++.|+||++| |++.+..++. ..| +++++||++++ +|+|||||+||+|+|.+++++ ||+|++|||+++.
T Consensus 540 ~~~G~Dii~f----W~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~-ygaDalR~~l~~~- 613 (958)
T PLN02943 540 LETGHDILFF----WVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKE-FGTDALRFTLALG- 613 (958)
T ss_pred EEEeehHHHH----HHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHh-cCChHHHHHHHhC-
Confidence 9999999976 5554333332 445 78999999997 999999999999999999999 9999999999986
Q ss_pred CCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHH-------------HcCCCCC-CcccCChHHHHHHHHHHHHH
Q psy2393 388 NNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEK-------------YFKGYLN-MKWVKDNDTFLSKLRVVSSS 453 (576)
Q Consensus 388 ~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~-------------~~~~~~~-~~~~~d~~~l~~~l~~~~~~ 453 (576)
...+|++|+++.+.. +++++++++|+...+.+.+.. .+++..+ ..+...++|++++++.+.+.
T Consensus 614 -~~~~d~~fs~~~l~~--~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~ 690 (958)
T PLN02943 614 -TAGQDLNLSTERLTS--NKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDS 690 (958)
T ss_pred -CCCCCccccHHHHHH--HHHHHHHHHHHHHHHHhccccccccccccccccccCCccccccccCHHHHHHHHHHHHHHHH
Confidence 346899999998865 478899999987655443311 1111111 01222239999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Q psy2393 454 IQKYYENRNFNKVLYIVIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETF 531 (576)
Q Consensus 454 v~~a~~~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~ 531 (576)
+.++|++|+|+.|++.+++|+ +++|+|++.+|||.+.++. ......+..++..++..+++||+|||||+||+||+.
T Consensus 691 v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~--~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~ 768 (958)
T PLN02943 691 VTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGD--NSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQA 768 (958)
T ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCc--hHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 999999999999999999995 9999999999998765432 122345567778899999999999999999999999
Q ss_pred cCC
Q psy2393 532 LNI 534 (576)
Q Consensus 532 L~~ 534 (576)
|+.
T Consensus 769 L~~ 771 (958)
T PLN02943 769 LPY 771 (958)
T ss_pred cCC
Confidence 974
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-78 Score=690.08 Aligned_cols=491 Identities=19% Similarity=0.252 Sum_probs=385.8
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc------CCCHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA------GMTPK 82 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~------g~~~~ 82 (576)
+++++|+|++||||+||.|||||+++++++|+++||+||+| ++|.|++|||+||+||+.+|++. +.++.
T Consensus 46 ~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G-----~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~ 120 (912)
T PRK05743 46 KGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSG-----FDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAA 120 (912)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccC-----CcccCCCCcCCCccHhHHHHHHHcCCccccCCHH
Confidence 46678999999999999999999999999999999999999 99999999999999999999885 56666
Q ss_pred H-------HHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccc
Q psy2393 83 E-------FINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRY 153 (576)
Q Consensus 83 ~-------~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~ 153 (576)
+ +++++.+.++++|++||+ +||+.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|+++|
T Consensus 121 ~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~-~~Gliy~~~~~v~w~p~~~TaLad~E 199 (912)
T PRK05743 121 EFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMA-KKGYLYKGLKPVYWCPDCGSALAEAE 199 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHH-HCCCEEecceeEecCCCcCCCchhhH
Confidence 4 788899999999999999 7889999999999999999999999 99999999999999999999999999
Q ss_pred eecc---CC-------CCC------------------------------CC-CC--------------------------
Q psy2393 154 IKGE---CP-------ICN------------------------------AK-DQ-------------------------- 166 (576)
Q Consensus 154 v~~~---~p-------~c~------------------------------~~-~~-------------------------- 166 (576)
|++. +| ... .+ ..
T Consensus 200 vey~~~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~ 279 (912)
T PRK05743 200 VEYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFG 279 (912)
T ss_pred hhcccccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhC
Confidence 9741 10 000 00 00
Q ss_pred ----------------------------------------CCCc------------------------cc--cCCCcCCC
Q psy2393 167 ----------------------------------------YGDF------------------------CE--CCSSIYTP 180 (576)
Q Consensus 167 ----------------------------------------~g~~------------------------c~--~cg~~~~~ 180 (576)
+|.. |. ..|++...
T Consensus 280 ~~~~~~~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~ 359 (912)
T PRK05743 280 WEDYEVLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEE 359 (912)
T ss_pred CcceEEEEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecC
Confidence 0000 00 01111100
Q ss_pred -C------------------------------ccCCCcccCCCCccEEeeecceeEecCchh--hHHHHHHhhhcCC-CC
Q psy2393 181 -T------------------------------KLINPYSILSGTKPIIKSSKHFFFKLSDKR--CIDFLRKWAIHDK-RL 226 (576)
Q Consensus 181 -~------------------------------~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~--~~~~l~~~~~~~~-~~ 226 (576)
. ....|+|||||++++++.++|||+++ ++ +++.+.+. +++. ++
T Consensus 360 ~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~--~~~~~k~~~l~~-~~~v~~~ 436 (912)
T PRK05743 360 APLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISM--DKKGLREQALKA-IEKVKWI 436 (912)
T ss_pred CcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeC--ChHHHHHHHHHH-HcccEEE
Confidence 0 00259999999999999999999999 65 99999999 7776 57
Q ss_pred ChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC----CCCc------------------EEEEEeecccchhhhcch
Q psy2393 227 QPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN----TLEK------------------YFYVWLDAPIGYLASLKN 284 (576)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~----~~~~------------------~~~vw~d~~~~~~~~~~~ 284 (576)
|+..++++.+|++ +++|||||||+ +||+|||. +.+. ..++|++....++..
T Consensus 437 P~~~~~r~~~~i~---~~~DWcISRQR-~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~--- 509 (912)
T PRK05743 437 PAWGKNRIESMVE---NRPDWCISRQR-TWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLP--- 509 (912)
T ss_pred ChHHHHHHHHHHh---cCcCccccccc-eeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcC---
Confidence 8889999999998 79999999999 99999997 2222 235676655433321
Q ss_pred hhhhCCCCCccccccccc-------------------ccccCCCcceEEEeeecCcc--hhHhHHHHHHHhcCCCCCcEE
Q psy2393 285 FFEKGGPKKKYNELRNFD-------------------EFISSPNTEQYHFIGKDIFY--FHILFWPAILKFSGRKLPNNI 343 (576)
Q Consensus 285 ~~~~~g~~~~~~~~~~~~-------------------~~w~~~~~~~i~~~G~D~~~--fh~~~~~a~l~~~~~~~p~~~ 343 (576)
.++ ..|.++.+.- .+||.+ +|++|+||++ ||+.+|+++++ .|.++|+.+
T Consensus 510 ---~~~--~~~~~~~DvlDvWfdSg~s~~~~~~~~~~~~~P~D----l~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~v 579 (912)
T PRK05743 510 ---DEA--DEYEKETDILDVWFDSGSSHAAVLEQRPELGYPAD----LYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQV 579 (912)
T ss_pred ---Ccc--cCEEECCchhhhhhhhCCCHHHHhcCccccCCCce----EEEecccccchHHHHHHHHHHHh-cCCCcccee
Confidence 000 0122212222 244433 9999999995 77999998776 777778999
Q ss_pred eeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHH
Q psy2393 344 FVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSS 422 (576)
Q Consensus 344 ~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~ 422 (576)
++||||++ +|+|||||+||+|+|.+++++ ||+|++|||+++. +...|++|+.+.+... .+++++++|+++.+.+
T Consensus 580 l~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaDalR~~ll~~--~~~~D~~~s~~~l~~~--~~~~~kl~N~~rf~~~ 654 (912)
T PRK05743 580 LTHGFTVDGKGRKMSKSLGNVIDPQDVIKK-YGADILRLWVAST--DYSGDVRISDEILKQV--AEAYRRIRNTLRFLLG 654 (912)
T ss_pred EEeeeEECCCCCCCCCCCCCcCCHHHHHHh-cChHHHHHHHHhc--CCCCCeeecHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 99999998 999999999999999999999 9999999999974 4568999999877653 5568899998744433
Q ss_pred HHHHHcC---CCCCC-ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhhhhcCccccccCccc
Q psy2393 423 FIEKYFK---GYLNM-KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINIFFDQNKPWKLAKNNIY 495 (576)
Q Consensus 423 ~~~~~~~---~~~~~-~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~ 495 (576)
.+.. +. +.++. .+. .| +|++++++.+.+.+.++|++|+|++|++.|++|+ .++|.|++..|+|.+......
T Consensus 655 nl~~-~~~~~~~~~~~~l~~~D-~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~ 732 (912)
T PRK05743 655 NLND-FDPAKDAVPYEELLELD-RWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADS 732 (912)
T ss_pred CccC-CCcccccCCchhCCHHH-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCc
Confidence 2211 11 01111 122 25 9999999999999999999999999999999999 789999999999876542111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcC
Q psy2393 496 HEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLN 533 (576)
Q Consensus 496 ~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~ 533 (576)
.. .+.+..++..++..++++|+|||||+||+||+.|+
T Consensus 733 ~~-r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~ 769 (912)
T PRK05743 733 LA-RRSAQTALYHILEALVRWLAPILSFTAEEIWQYLP 769 (912)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 11 12233455678888999999999999999999996
|
|
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-78 Score=689.44 Aligned_cols=494 Identities=19% Similarity=0.240 Sum_probs=389.1
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-cCCC-------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-AGMT------- 80 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-~g~~------- 80 (576)
+++++|+|++|||||||.|||||+++++++|+++||+||+| ++|.+++||||||+||+.++++ .|++
T Consensus 38 ~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G-----~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~ 112 (975)
T PRK06039 38 EGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKG-----YKVERRAGWDTHGLPVELEVEKELGISGKKDIEE 112 (975)
T ss_pred CCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCC-----CcccCcCCcCCCccHHHHHHHHHhCcccccchhh
Confidence 46678999999999999999999999999999999999999 9999999999999999999987 4654
Q ss_pred ---------HHHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 81 ---------PKEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 81 ---------~~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
|.+++.++.+.+++++++||+ +|++.|.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|.|
T Consensus 113 ~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~-~kGliyr~~~~v~wcp~~~T~L 191 (975)
T PRK06039 113 YGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLY-DKGLLYKGYRVVPYCPRCETPL 191 (975)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHH-HCCCEEecceeeeecCCCCCCc
Confidence 678999999999999999996 7789999999999999999999999 9999999999999999999999
Q ss_pred ccccee--cc--------------------------CC----CC----CCCCC---------------------------
Q psy2393 150 PDRYIK--GE--------------------------CP----IC----NAKDQ--------------------------- 166 (576)
Q Consensus 150 ~~~~v~--~~--------------------------~p----~c----~~~~~--------------------------- 166 (576)
+++||+ +. .| .| ..++.
T Consensus 192 s~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~ 271 (975)
T PRK06039 192 SNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDY 271 (975)
T ss_pred cHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhccc
Confidence 999997 31 01 00 00000
Q ss_pred -----------------------------------------CCCc----cc----------------------cCCCcCC
Q psy2393 167 -----------------------------------------YGDF----CE----------------------CCSSIYT 179 (576)
Q Consensus 167 -----------------------------------------~g~~----c~----------------------~cg~~~~ 179 (576)
+|.. |+ ..|++.+
T Consensus 272 ~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~ 351 (975)
T PRK06039 272 EVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTE 351 (975)
T ss_pred EEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcC
Confidence 0000 00 0111110
Q ss_pred C-C------------------------------ccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCC
Q psy2393 180 P-T------------------------------KLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQ 227 (576)
Q Consensus 180 ~-~------------------------------~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~ 227 (576)
. . ....|+|||||++++++.++|||+++ +++++.+.++ +++. ++|
T Consensus 352 ~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~--~~~k~~ll~~-~~~i~~~P 428 (975)
T PRK06039 352 EVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRV--TKIKDRMLEL-NQKINWYP 428 (975)
T ss_pred CCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEec--HHHHHHHHHh-hCCeEEEC
Confidence 0 0 01259999999999999999999999 9999999999 7776 467
Q ss_pred hhHHH-HHHHHHhhcCCCCCcccccCCCCCCeecCC----CC--------------------------------------
Q psy2393 228 PEIVN-KIKEWLEKDNKFNDWDISRDAPYFGIKIPN----TL-------------------------------------- 264 (576)
Q Consensus 228 ~~~~~-~~~~~l~~~~~~~dw~isR~~~~WG~~iP~----~~-------------------------------------- 264 (576)
+..++ ++.+||+ +++|||||||+ +||+|||. ++
T Consensus 429 ~~~~~~~~~~wl~---~l~DW~ISRqr-~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~ 504 (975)
T PRK06039 429 EHIKDGRFGKWLE---NARDWNISRNR-YWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCP 504 (975)
T ss_pred cccchhhHHHHHh---cCccceeeecc-ccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCC
Confidence 77887 9999998 79999999999 99999995 11
Q ss_pred --------CcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHH-HHhc
Q psy2393 265 --------EKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAI-LKFS 335 (576)
Q Consensus 265 --------~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~-l~~~ 335 (576)
.+++++|||+...+++..+. .... ...|+.+||.+ +++.|+||++||-.....+ ....
T Consensus 505 ~~~~~~r~~dVlDvWFdSg~~p~a~~~~-p~~~--------~~~f~~~~Pad----~~~~G~Di~r~Wf~~l~~~~~~~~ 571 (975)
T PRK06039 505 DGGTMRRVPDVIDVWFDSGSMPYAQLHY-PFEN--------KEWFEKHFPAD----FIVEGIDQTRGWFYTLLALSTALF 571 (975)
T ss_pred CCcceEeccccccceeecCCccHHHhCC-cccC--------hhhhhccCCce----EEEechhhHhhHHHHHHHHHHHhc
Confidence 16789999998888776542 1100 13467788765 9999999997632111111 1123
Q ss_pred CCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHH
Q psy2393 336 GRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYI 414 (576)
Q Consensus 336 ~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~ 414 (576)
|.++++.+++||||++ +|+|||||+||+|+|.+++++ ||+|++|||+++..+. ..|++||++.+.+..++ ++++++
T Consensus 572 ~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~lls~~~~-~~D~~fs~~~~~~~~~~-~l~kl~ 648 (975)
T PRK06039 572 DRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDK-YGADALRWYLLSSSAP-WEDLRFSEDGVREVVRK-FLLTLW 648 (975)
T ss_pred CCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHH-hChHHHHHHHHhCCCC-CCCceechhHHHHHHHH-HHHHHH
Confidence 4555699999999998 999999999999999999999 9999999999998553 47899999986666644 569999
Q ss_pred HHHHHHHHHHH-HHcC-C-C-CC-CcccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhcCcc
Q psy2393 415 NIASRSSSFIE-KYFK-G-Y-LN-MKWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT-NFINIFFDQNKPW 487 (576)
Q Consensus 415 n~~~R~~~~~~-~~~~-~-~-~~-~~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~-~~~n~y~~~~k~~ 487 (576)
|+++++..... ..+. . . .+ ..+.. | +|+++.+..+.+.+.++|++|+++.|++.|++|+ .++|+|++.+|+.
T Consensus 649 N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D-~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~~k~r 727 (975)
T PRK06039 649 NVYSFFVLYANLDGFDYPPAEDEVDSLNELD-RWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRR 727 (975)
T ss_pred HHHHHHHHHhhhccCCccccccccccCCHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99877543221 0110 0 0 11 11222 5 9999999999999999999999999999999999 5679999988763
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 488 KLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 488 ~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
.+.... .. ...++..++..+|+.++++|+|||||+||+||+.|+.
T Consensus 728 ~w~~~~-~~-~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~ 772 (975)
T PRK06039 728 FWKEED-DP-DKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTR 772 (975)
T ss_pred hccCCC-cH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc
Confidence 332221 11 1234556777899999999999999999999999984
|
|
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=689.91 Aligned_cols=491 Identities=18% Similarity=0.218 Sum_probs=389.5
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-cCCC-------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-AGMT------- 80 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-~g~~------- 80 (576)
+++++|++++||||+||.|||||+++++++|+++||+||+| |+|.|++||||||+||+.++++ .|++
T Consensus 35 ~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G-----~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~ 109 (1159)
T PLN02882 35 EGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTG-----HHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLK 109 (1159)
T ss_pred CCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCC-----CcccccCccCCCCcHHHHHHHHHcCCCCccchhh
Confidence 45678999999999999999999999999999999999999 9999999999999999999964 4643
Q ss_pred ---------HHHHHHHHHHHHHHHHhhcC--ccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 81 ---------PKEFINNISSNRKKYLDGFY--IKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 81 ---------~~~~~~~~~~~~~~~l~~lg--i~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
|++++.+|.+.+++++++|| ++||+.|.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|.|
T Consensus 110 ~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~-~kGliyr~~~~v~wcp~~~TaL 188 (1159)
T PLN02882 110 MGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLF-EKGLVYKGFKVMPYSTACKTPL 188 (1159)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHH-HCCCEEecceeEeecCCCCCCc
Confidence 55688999999999999999 58899999999999999999999999 9999999999999999999999
Q ss_pred ccccee--c---------------------------cCC----CCC----CCC---------------------------
Q psy2393 150 PDRYIK--G---------------------------ECP----ICN----AKD--------------------------- 165 (576)
Q Consensus 150 ~~~~v~--~---------------------------~~p----~c~----~~~--------------------------- 165 (576)
++.|++ + |.| .|. .++
T Consensus 189 s~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~ 268 (1159)
T PLN02882 189 SNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPT 268 (1159)
T ss_pred chhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHHHHh
Confidence 987762 2 111 100 000
Q ss_pred -----------------------------------------------C------------CCC-----------------
Q psy2393 166 -----------------------------------------------Q------------YGD----------------- 169 (576)
Q Consensus 166 -----------------------------------------------~------------~g~----------------- 169 (576)
. .|.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~ 348 (1159)
T PLN02882 269 AKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVC 348 (1159)
T ss_pred hhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCCCChhHHHHH
Confidence 0 000
Q ss_pred ------------ccc--cCCCcCCC-----------------------------Ccc--CCCcccCCCCccEEeeeccee
Q psy2393 170 ------------FCE--CCSSIYTP-----------------------------TKL--INPYSILSGTKPIIKSSKHFF 204 (576)
Q Consensus 170 ------------~c~--~cg~~~~~-----------------------------~~l--~~p~~~~~~~~~~~~~~~~~f 204 (576)
.|. ..|++.+. +++ ..|+|||||+|++++.++|||
T Consensus 349 ~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWF 428 (1159)
T PLN02882 349 LANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWF 428 (1159)
T ss_pred HHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeE
Confidence 000 01111100 000 149999999999999999999
Q ss_pred EecCchhhHHHHHHhhhcCCCC-ChhH-HHHHHHHHhhcCCCCCcccccCCCCCCeecCC----CC--------------
Q psy2393 205 FKLSDKRCIDFLRKWAIHDKRL-QPEI-VNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN----TL-------------- 264 (576)
Q Consensus 205 ~~l~~~~~~~~l~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~----~~-------------- 264 (576)
+++ +++++.+.+. .++..| |+.. .+++.+||+ +++|||||||| +||+|||. +.
T Consensus 429 i~~--~~~k~~~l~~-~~~i~w~P~~~~~~r~~~wl~---~~~DW~ISRqR-~WGtPIPvw~~~~~~~~~~~~s~~el~~ 501 (1159)
T PLN02882 429 VKV--EEIKDRLLEN-NKQTYWVPDYVKEKRFHNWLE---NARDWAVSRSR-FWGTPLPIWISDDGEEVVVIGSIAELEK 501 (1159)
T ss_pred EEc--HHHHHHHHHh-hCCcEEECCcchhhHHHHHHh---cCcccceeecc-ccCCccceEEeCCCCeEEecCcHHHHHH
Confidence 999 9999999998 777754 7777 489999998 79999999999 99999994 10
Q ss_pred -----------------------C----------cEEEEEeecccchhhhcchhhhhCCCCCcccc--cccccccccCCC
Q psy2393 265 -----------------------E----------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNE--LRNFDEFISSPN 309 (576)
Q Consensus 265 -----------------------~----------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~w~~~~ 309 (576)
+ .++++|||+.....+..+ ||. .+.|..+||.+
T Consensus 502 ~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~-----------~p~e~~~~f~~~~PaD- 569 (1159)
T PLN02882 502 LSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIH-----------YPFENKELFEKNFPAD- 569 (1159)
T ss_pred HhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcC-----------CcccChhHhhccCCce-
Confidence 0 456788887766655432 221 13456667654
Q ss_pred cceEEEeeecCcchhHhHHHHHHHh---cCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 310 TEQYHFIGKDIFYFHILFWPAILKF---SGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 310 ~~~i~~~G~D~~~fh~~~~~a~l~~---~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+++.|+||+++| ++..++.+ .|.++|+++++||||++ +|+|||||+||+|+|.+++++ ||+|+||||+++
T Consensus 570 ---~i~eG~Dq~RgW--f~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~-YGADaLR~~Ll~ 643 (1159)
T PLN02882 570 ---FVAEGLDQTRGW--FYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDK-YGADALRLYLIN 643 (1159)
T ss_pred ---EEEEecchhhhH--HHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHH-hCcHHHHHHHHh
Confidence 999999999864 33333333 25677799999999999 899999999999999999999 999999999997
Q ss_pred hCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHH----HHcCCCCCCc---c----c-CChHHHHHHHHHHHHH
Q psy2393 386 KLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIE----KYFKGYLNMK---W----V-KDNDTFLSKLRVVSSS 453 (576)
Q Consensus 386 ~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~----~~~~~~~~~~---~----~-~d~~~l~~~l~~~~~~ 453 (576)
.......|++|+.+.+.+.. ++++.+++|++..+...+. +++++..|.. + . .| +|+++.+.++.+.
T Consensus 644 s~~~~~~d~~fs~~~v~~~~-~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D-~wIls~l~~li~~ 721 (1159)
T PLN02882 644 SPVVRAEPLRFKEEGVFGVV-KDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLD-RWINSATQSLVKF 721 (1159)
T ss_pred CCcccCcCcccCHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHH-HHHHHHHHHHHHH
Confidence 63333467899999877654 4457778887644433221 2222333321 1 1 25 9999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH-HHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHc
Q psy2393 454 IQKYYENRNFNKVLYIVIEQTN-FINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFL 532 (576)
Q Consensus 454 v~~a~~~~~~~~~~~~l~~~~~-~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L 532 (576)
+.++|++|+++.|++.|++|+. ++|+|++.+|||.+.+++ ..+++++++++.++|+.++++|+|||||+||+||++|
T Consensus 722 v~~~me~y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~--~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L 799 (1159)
T PLN02882 722 VREEMGAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTG--EEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNL 799 (1159)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCC--hHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Confidence 9999999999999999999994 899999999999886542 2346677889999999999999999999999999999
Q ss_pred CC
Q psy2393 533 NI 534 (576)
Q Consensus 533 ~~ 534 (576)
+.
T Consensus 800 ~~ 801 (1159)
T PLN02882 800 RK 801 (1159)
T ss_pred cc
Confidence 74
|
|
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-77 Score=678.14 Aligned_cols=486 Identities=20% Similarity=0.254 Sum_probs=376.9
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc----CCC----
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA----GMT---- 80 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~----g~~---- 80 (576)
+++++|+|++||||+||.|||||+++++++|+++||++|+| ++|.|++||||||+||+.++++. |.+
T Consensus 51 ~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G-----~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~ 125 (961)
T PRK13804 51 KGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLG-----FDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEV 125 (961)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcC-----CcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhC
Confidence 46678999999999999999999999999999999999999 99999999999999999988764 332
Q ss_pred --------HHHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccc
Q psy2393 81 --------PKEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLP 150 (576)
Q Consensus 81 --------~~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~ 150 (576)
+.++++++.+.++++|++||+ +|++.|.|+++.|...++++|.+|+ ++|+||++..+++|||.|+|+|+
T Consensus 126 ~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~-~kGliyr~~kpV~Wcp~~~TaLa 204 (961)
T PRK13804 126 PVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFA-AKGQLYRGSKPVMWSVVERTALA 204 (961)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHH-HCCCEEeCCcceecCCCCCCCcc
Confidence 345788889999999999999 5779999999999999999999999 99999999999999999999999
Q ss_pred ccceecc-----------------------C--------C----CC----CCCCC-C-----------------------
Q psy2393 151 DRYIKGE-----------------------C--------P----IC----NAKDQ-Y----------------------- 167 (576)
Q Consensus 151 ~~~v~~~-----------------------~--------p----~c----~~~~~-~----------------------- 167 (576)
++||++. + | .+ ..++. |
T Consensus 205 ~~Evey~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva 284 (961)
T PRK13804 205 EAEIEYHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVA 284 (961)
T ss_pred chhcccccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeH
Confidence 9988741 0 1 00 00000 0
Q ss_pred ----------------------------------------------------------CCcc----c-------------
Q psy2393 168 ----------------------------------------------------------GDFC----E------------- 172 (576)
Q Consensus 168 ----------------------------------------------------------g~~c----~------------- 172 (576)
|..| +
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~ 364 (961)
T PRK13804 285 DALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKY 364 (961)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHc
Confidence 0000 0
Q ss_pred ----------cCCCcCCC-Cc--------------------------------------cCCCcccCCCCccEEeeecce
Q psy2393 173 ----------CCSSIYTP-TK--------------------------------------LINPYSILSGTKPIIKSSKHF 203 (576)
Q Consensus 173 ----------~cg~~~~~-~~--------------------------------------l~~p~~~~~~~~~~~~~~~~~ 203 (576)
..|++.+. .+ ...|+|||||+|++++.++||
T Consensus 365 ~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QW 444 (961)
T PRK13804 365 GRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQW 444 (961)
T ss_pred CCCcccccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccc
Confidence 00111000 00 025999999999999999999
Q ss_pred eEecCchh-------hHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCC---CC-------
Q psy2393 204 FFKLSDKR-------CIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNT---LE------- 265 (576)
Q Consensus 204 f~~l~~~~-------~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~---~~------- 265 (576)
|+++ +. +++.+++. +++. ++|+..++++.+|++ +++|||||||| +||+|||.. .+
T Consensus 445 Fi~~--~~~~~~~~~~k~~al~~-i~~v~~~P~~~~~r~~~~i~---~~~DWcISRQR-~WG~PIP~~~~~~~~~~~~~~ 517 (961)
T PRK13804 445 FISM--DKDLGDGTTLRSRALDA-IDKTRFVPAAGQNRLYNMIE---DRPDWVISRQR-AWGVPIPIFVAEDGEILMDEE 517 (961)
T ss_pred cEEc--CCcccchHHHHHHHHHH-HhccEEECHHHHHHHHHHHh---cCccceeeeec-cCCceeeEEEcCCCCEeccHH
Confidence 9999 66 99999998 7776 578889999999998 88999999999 999999961 11
Q ss_pred ----------------------------------------cEEEEEeecccchhhhcchhhhhCCCCCcccccccccccc
Q psy2393 266 ----------------------------------------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305 (576)
Q Consensus 266 ----------------------------------------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w 305 (576)
.+++||||+...+..... .. .++ .|
T Consensus 518 ~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~----~~---------~~~--~~ 582 (961)
T PRK13804 518 VNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLE----DR---------PDL--KW 582 (961)
T ss_pred HHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCcccccc----CC---------ccc--CC
Confidence 123344444322211000 00 111 34
Q ss_pred cCCCcceEEEeeecCcc--hhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHH
Q psy2393 306 SSPNTEQYHFIGKDIFY--FHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYY 382 (576)
Q Consensus 306 ~~~~~~~i~~~G~D~~~--fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~ 382 (576)
|.+ +|++|+||++ ||+.+..+ +...|..+++.+++|||+++ +|+|||||+||+|+|.+++++ ||+|++|||
T Consensus 583 PaD----~~~eG~Di~rgWF~s~ll~s-~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~-yGaD~lRl~ 656 (961)
T PRK13804 583 PAD----LYLEGSDQHRGWFNSSLLES-CGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQ-SGADILRLW 656 (961)
T ss_pred Cce----EEEEEcccccHHHHHHHHHH-HHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHh-cCHHHHHHH
Confidence 433 8999999995 77643222 11224455699999999999 999999999999999999999 999999999
Q ss_pred HHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCC--CC-Cccc-CChHHHHHHHHHHHHHHHHHH
Q psy2393 383 IASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGY--LN-MKWV-KDNDTFLSKLRVVSSSIQKYY 458 (576)
Q Consensus 383 l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~--~~-~~~~-~d~~~l~~~l~~~~~~v~~a~ 458 (576)
+++. +...|++||.+.+... .+++++++|+++++.+.+.++..+. ++ ..+. .| +|+++++..+.+.+.++|
T Consensus 657 lls~--~~~~D~~fs~~~l~~~--~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D-~wil~~l~~~~~~v~~~~ 731 (961)
T PRK13804 657 VASV--DYSDDQRIGKEILKQV--SETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELE-RYMLHRLNELDGLVREAY 731 (961)
T ss_pred HHhC--CCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHH-HHHHHHHHHHHHHHHHHH
Confidence 9975 4668999999977553 6678999999866655554322111 11 1222 25 999999999999999999
Q ss_pred HhhhHHHHHHHHHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 459 ENRNFNKVLYIVIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 459 ~~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
++|+|+++++.|++|+ .++|.|++..|+|.+........ .+.+..++..+|+.++++|+|||||+||+||++|+.
T Consensus 732 e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~-r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~ 808 (961)
T PRK13804 732 DAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLR-RRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYP 808 (961)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhccc
Confidence 9999999999999998 67999999999998765322221 233445666789999999999999999999999983
|
|
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-76 Score=673.19 Aligned_cols=483 Identities=20% Similarity=0.287 Sum_probs=376.4
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-------CCCHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-------GMTPK 82 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-------g~~~~ 82 (576)
.+++|+|++||||+||.|||||+++++++|+++||+||+| ++|.|++|||+||+||+.++++. +.++.
T Consensus 30 ~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G-----~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~ 104 (974)
T PLN02843 30 NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQG-----KKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPI 104 (974)
T ss_pred CCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcC-----CccccCCccCCCCcHHHHHHHHHhchhhhccCCHH
Confidence 4567999999999999999999999999999999999999 99999999999999999998542 23444
Q ss_pred -------HHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccc
Q psy2393 83 -------EFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRY 153 (576)
Q Consensus 83 -------~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~ 153 (576)
++++++.+.++++|++||+ +||+.|.|+++.|...++++|.+|+ ++|+||++..+++|||.|+|.|+++|
T Consensus 105 ~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~-~~GlIyr~~kpV~Wcp~~~Talae~E 183 (974)
T PLN02843 105 KLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMF-LNGYIYRGRKPVHWSPSSRTALAEAE 183 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHH-HCCCEEecceeeeecCCCCCcchHhH
Confidence 4577888889999999999 8889999999999999999999999 99999999999999999999999999
Q ss_pred eeccC----C-------CCC----------C--------------------------CC-C-------------------
Q psy2393 154 IKGEC----P-------ICN----------A--------------------------KD-Q------------------- 166 (576)
Q Consensus 154 v~~~~----p-------~c~----------~--------------------------~~-~------------------- 166 (576)
|++.- | .-. . ++ .
T Consensus 184 vey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~ 263 (974)
T PLN02843 184 LEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGN 263 (974)
T ss_pred hcccCCccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEeccccccccccccc
Confidence 87520 0 000 0 00 0
Q ss_pred ------------------------------------------------------------------------CCCcc---
Q psy2393 167 ------------------------------------------------------------------------YGDFC--- 171 (576)
Q Consensus 167 ------------------------------------------------------------------------~g~~c--- 171 (576)
.|..|
T Consensus 264 ~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~~~~GTG~Vh~ 343 (974)
T PLN02843 264 KKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHT 343 (974)
T ss_pred cccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCCCceeEEecCCccCCCCCCCeEEe
Confidence 00000
Q ss_pred -----------------------ccCCCcC-------------CCCc-------------------cCCCcccCCCCccE
Q psy2393 172 -----------------------ECCSSIY-------------TPTK-------------------LINPYSILSGTKPI 196 (576)
Q Consensus 172 -----------------------~~cg~~~-------------~~~~-------------------l~~p~~~~~~~~~~ 196 (576)
+..|++. +..+ ...|+||||++|++
T Consensus 344 aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi 423 (974)
T PLN02843 344 APGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTI 423 (974)
T ss_pred CCCCCHHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEE
Confidence 0011111 0100 12499999999999
Q ss_pred EeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCC----CC------
Q psy2393 197 IKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNT----LE------ 265 (576)
Q Consensus 197 ~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~----~~------ 265 (576)
+|.++|||+++ +.+++.+.+. +++. ++|+..++++.+|++ +++|||||||+ +||+|||.. .+
T Consensus 424 ~r~t~QWFi~~--~~~k~~al~~-~~~v~~~P~~~~~r~~~~i~---~~~DWcISRQr-~WG~pIP~~~~~~~~~~~~~~ 496 (974)
T PLN02843 424 FRATEQWFASV--EGFRQAALDA-IDKVKWIPAQGENRIRAMVS---GRSDWCISRQR-TWGVPIPVFYHVETKEPLMNE 496 (974)
T ss_pred EEecCceeEeC--HHHHHHHHHH-HhccEEEChHHHHHHHHHHh---cCcceeeeecc-ccccEEEEEEEcCCCCEeech
Confidence 99999999999 9999999999 7776 678889999999998 89999999999 999999941 11
Q ss_pred ------------------------------------------cEEEEEeecccchhhhcchhhhhCCCCCcccccccccc
Q psy2393 266 ------------------------------------------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDE 303 (576)
Q Consensus 266 ------------------------------------------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 303 (576)
.+++||||+.+.+....+ .....
T Consensus 497 ~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~---------------~~~~~ 561 (974)
T PLN02843 497 ETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLG---------------SREGL 561 (974)
T ss_pred hhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhc---------------ccccc
Confidence 112233333222211000 01112
Q ss_pred cccCCCcceEEEeeecCcc--hhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhh---------
Q psy2393 304 FISSPNTEQYHFIGKDIFY--FHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLK--------- 371 (576)
Q Consensus 304 ~w~~~~~~~i~~~G~D~~~--fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~--------- 371 (576)
+||.+ +++.|+||++ ||..+|+++ ...|..+++.+++|||+++ +|+|||||+||+|+|.++++
T Consensus 562 ~~PaD----l~~eG~Di~rgWf~s~l~~~~-~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~ 636 (974)
T PLN02843 562 SYPAD----LYLEGSDQHRGWFQSSLLTSV-ATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEP 636 (974)
T ss_pred CCCce----eeeeeccccchHHHHHHHHHH-HhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhcccccccc
Confidence 34433 8999999997 778888765 4456666699999999999 89999999999999999999
Q ss_pred cCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHc-CCCCCC-ccc-CChHHHHHHHH
Q psy2393 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYF-KGYLNM-KWV-KDNDTFLSKLR 448 (576)
Q Consensus 372 ~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~-~~~~~~-~~~-~d~~~l~~~l~ 448 (576)
+ ||+|+||||+++. ++..|++|+.+.+.+. .+.+++++|+++++.+-+.... ...++. .+. .| +|++++++
T Consensus 637 ~-yGaD~lR~~l~~~--~~~~d~~~s~~~l~~~--~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D-~wiLskL~ 710 (974)
T PLN02843 637 A-YGADVLRLWVASV--DYTGDVLIGPQILKQM--SDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSID-KYALFQLE 710 (974)
T ss_pred c-cChHHHHHHHHhc--ccCCCceeCHHHHHHH--HHHHHHHHHHHHHHHhCccCCCcccccCccccCHHH-HHHHHHHH
Confidence 8 9999999999975 6778999999876554 4568889999866543332210 011221 122 25 99999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhhhhcCccccccCccc--HHHHHHHHHHHHHHHHHHHHhccccccHH
Q psy2393 449 VVSSSIQKYYENRNFNKVLYIVIEQT--NFINIFFDQNKPWKLAKNNIY--HEKLHKISSRLLEAFRILTIYLKPILPNL 524 (576)
Q Consensus 449 ~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~--~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ 524 (576)
.+.+.+.++|++|+|++|++.|++|+ +++|.|++..|||.+.+.... ++.++ .++..++..++++|+|||||+
T Consensus 711 ~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~q---tvL~~iLe~l~~LLaPimPf~ 787 (974)
T PLN02843 711 NVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQ---TVLAAHLLSLLRAIAPILPHL 787 (974)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHH---HHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999999999999984 799999999999988653212 22234 445577788899999999999
Q ss_pred HHHHHHHcCC
Q psy2393 525 AKSVETFLNI 534 (576)
Q Consensus 525 ae~i~~~L~~ 534 (576)
||+||+.|+.
T Consensus 788 aEEiw~~L~~ 797 (974)
T PLN02843 788 AEDAWQNLPF 797 (974)
T ss_pred HHHHHHhccc
Confidence 9999999985
|
|
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-76 Score=676.66 Aligned_cols=490 Identities=23% Similarity=0.304 Sum_probs=394.2
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-CCC------H
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-GMT------P 81 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-g~~------~ 81 (576)
+++++|+|++|||||||.|||||+++++++|+++||+||+| ++|++++|||+||+||+.+|++. |.+ +
T Consensus 33 ~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G-----~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~ 107 (861)
T TIGR00392 33 KGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQG-----FNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISS 107 (861)
T ss_pred CCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCC-----CccCCCCCcCCCccHHHHHHHHHhCcccccccch
Confidence 45678999999999999999999999999999999999999 99999999999999999999875 654 3
Q ss_pred ----------HHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 82 ----------KEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 82 ----------~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
+++++++.+.++++|++||+ +|++.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|
T Consensus 108 ~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~-~~gliyr~~~~v~w~p~~~T~L 186 (861)
T TIGR00392 108 LEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAH-EKGLLYRGLKPVYWSPRCRTAL 186 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHH-HCCCEeecceeeecCCCcCCcc
Confidence 47889999999999999999 7789999999999999999999999 9999999999999999999999
Q ss_pred cccceeccC-------C-------CCC-------------------------------CCC-C-----------------
Q psy2393 150 PDRYIKGEC-------P-------ICN-------------------------------AKD-Q----------------- 166 (576)
Q Consensus 150 ~~~~v~~~~-------p-------~c~-------------------------------~~~-~----------------- 166 (576)
+++||++.+ | ..+ .++ .
T Consensus 187 a~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~ 266 (861)
T TIGR00392 187 AEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAK 266 (861)
T ss_pred cHHHHhcccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeH
Confidence 999986321 1 000 000 0
Q ss_pred -------------C---------------------C---------C----------------------------------
Q psy2393 167 -------------Y---------------------G---------D---------------------------------- 169 (576)
Q Consensus 167 -------------~---------------------g---------~---------------------------------- 169 (576)
+ + .
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~ 346 (861)
T TIGR00392 267 KLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKY 346 (861)
T ss_pred HHHHHHHHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHc
Confidence 0 0 0
Q ss_pred ----cc--ccCCCcCCC--C------c------------------------------cCCCcccCCCCccEEeeecceeE
Q psy2393 170 ----FC--ECCSSIYTP--T------K------------------------------LINPYSILSGTKPIIKSSKHFFF 205 (576)
Q Consensus 170 ----~c--~~cg~~~~~--~------~------------------------------l~~p~~~~~~~~~~~~~~~~~f~ 205 (576)
.| +..|++.+. . . ...|+|||||++++++.++|||+
T Consensus 347 ~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi 426 (861)
T TIGR00392 347 GLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFI 426 (861)
T ss_pred CCCcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccE
Confidence 00 001111000 0 0 01489999999999999999999
Q ss_pred ecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC---C------------------
Q psy2393 206 KLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN---T------------------ 263 (576)
Q Consensus 206 ~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~---~------------------ 263 (576)
++ +++++.++++ +++. ++|+..++++.+|++ +++|||||||+ +||+|||. .
T Consensus 427 ~~--~~~k~~~l~~-~~~i~~~P~~~~~~~~~~l~---~l~DW~ISRqr-~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~ 499 (861)
T TIGR00392 427 KT--KDIKDQMLEQ-IKKVNWVPEWGEGRFGNWLE---NRPDWCISRQR-YWGIPIPIWYCEDTGEPIVVGSIEELIELI 499 (861)
T ss_pred Ec--HHHHHHHHHH-hCCcEEECchHHHHHHHHHh---CCCcceeeccc-cCCCeeeEEEECCCCCCcCchhHHHHHHHH
Confidence 99 9999999999 7776 578889999999998 89999999999 99999995 1
Q ss_pred --------------------------------CCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcc
Q psy2393 264 --------------------------------LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTE 311 (576)
Q Consensus 264 --------------------------------~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~ 311 (576)
+..++||||||.++|++..+ +... ..+|+.+||.+
T Consensus 500 ~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~-~~~~---------~~~f~~~~P~d--- 566 (861)
T TIGR00392 500 ELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIH-YPFE---------NEKFKEVFPAD--- 566 (861)
T ss_pred HHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcC-CCCC---------cchhhccCCce---
Confidence 11378999999988887654 1111 13577788754
Q ss_pred eEEEeeecCcc--hhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCC
Q psy2393 312 QYHFIGKDIFY--FHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLN 388 (576)
Q Consensus 312 ~i~~~G~D~~~--fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~ 388 (576)
++++|+||++ ||..+|++++. .+..+|+.+++||||++ +|+|||||+||+|+|.|++++ ||+|++|||+++. +
T Consensus 567 -~~i~G~Di~r~Wf~~~~~~~~~~-~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~-yGaDalR~~ll~~-~ 642 (861)
T TIGR00392 567 -FILEGSDQTRGWFYSSLAIGTAL-FGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINK-YGADILRLYVASS-D 642 (861)
T ss_pred -EEEEecchhccHHHHHHHHHHHH-cCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHH-cCHHHHHHHHHhC-C
Confidence 9999999997 78888887554 46677799999999998 999999999999999999999 9999999999998 4
Q ss_pred CCCCCcccchhhHhhhhhHHHHHHHHHHHHHHH--HHHHHHcC--CCCC-CcccC-ChHHHHHHHHHHHHHHHHHHHhhh
Q psy2393 389 NKIEDIDFNSQSFISCVNSDLIGKYINIASRSS--SFIEKYFK--GYLN-MKWVK-DNDTFLSKLRVVSSSIQKYYENRN 462 (576)
Q Consensus 389 ~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~--~~~~~~~~--~~~~-~~~~~-d~~~l~~~l~~~~~~v~~a~~~~~ 462 (576)
...|++|+++.+... ++.+.+.++|++.++. +.+.+... ...+ ..+.. | .++++++..+.+.+.++|++|+
T Consensus 643 -~~~D~~fs~~~l~~~-~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d-~~ll~~l~~~~~~v~~~~e~~~ 719 (861)
T TIGR00392 643 -PWEDLRFSDEILKQV-VEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEED-RWILSRLNSLVEEVNEALEKYN 719 (861)
T ss_pred -CCCCceECHHHHHHH-HHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHH-HHHHHHHHHHHHHHHHHHHhcc
Confidence 458899999987554 3557788888876665 33322110 0111 11222 5 9999999999999999999999
Q ss_pred HHHHHHHHHHHHH--HHHHhhhhcCc--cccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 463 FNKVLYIVIEQTN--FINIFFDQNKP--WKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 463 ~~~~~~~l~~~~~--~~n~y~~~~k~--~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
|+.|++.|++|+. ++|.|++.+|+ |....+ ... +++..++..+++.++++|+|||||+||+||+.|+..
T Consensus 720 ~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~--~~~--~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~ 792 (861)
T TIGR00392 720 FHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKD--NDK--RAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGG 792 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCC--HHH--HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc
Confidence 9999999999984 69999999987 433322 111 234566678899999999999999999999999853
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-76 Score=676.26 Aligned_cols=493 Identities=18% Similarity=0.221 Sum_probs=381.1
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-----cCCCH--
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-----AGMTP-- 81 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-----~g~~~-- 81 (576)
.++++|+|++||||+||.|||||+++++++|+++||+||+| ++|+|++|||+||+|++.++++ .|.++
T Consensus 125 ~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~ 199 (1066)
T PLN02381 125 SSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSG-----YNALWVPGVDHAGIATQVVVEKKLMRERHLTRHD 199 (1066)
T ss_pred CCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCC-----CcccccCCCCCCcChHHHHHHHHhHhhcCCChhh
Confidence 35678999999999999999999999999999999999999 9999999999999999999875 35543
Q ss_pred ----------HHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 82 ----------KEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 82 ----------~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
.++++++...++++|++||+ +|++.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|.|
T Consensus 200 ~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~-~~GlIyr~~~~VnWcP~~~TaL 278 (1066)
T PLN02381 200 IGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLY-KEGLIYRDIRLVNWDCTLRTAI 278 (1066)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHH-HCCCEEeccccccCCCCCCCCc
Confidence 36788999999999999998 5558889999999999999999999 9999999999999999999999
Q ss_pred cccceeccC--------------------------CCCCC-----------------------C----------------
Q psy2393 150 PDRYIKGEC--------------------------PICNA-----------------------K---------------- 164 (576)
Q Consensus 150 ~~~~v~~~~--------------------------p~c~~-----------------------~---------------- 164 (576)
++.||+++- |..+. +
T Consensus 279 Sd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~P 358 (1066)
T PLN02381 279 SDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHP 358 (1066)
T ss_pred cHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECC
Confidence 999775310 00000 0
Q ss_pred ----------C------CCCCccc--------------------------cCCCcCCC----------------------
Q psy2393 165 ----------D------QYGDFCE--------------------------CCSSIYTP---------------------- 180 (576)
Q Consensus 165 ----------~------~~g~~c~--------------------------~cg~~~~~---------------------- 180 (576)
+ .+|..|. ..|++.+.
T Consensus 359 l~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~ 438 (1066)
T PLN02381 359 FNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQ 438 (1066)
T ss_pred CCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHH
Confidence 0 0111110 11211110
Q ss_pred ----------CccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhh-----cCC-CCChhHHHHHHHHHhhcCCC
Q psy2393 181 ----------TKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAI-----HDK-RLQPEIVNKIKEWLEKDNKF 244 (576)
Q Consensus 181 ----------~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~-----~~~-~~~~~~~~~~~~~l~~~~~~ 244 (576)
-+...|+||||+++++++.++|||+++ ..+++.+.+. + ++. ++|+..++++.+|++ ++
T Consensus 439 ~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~--~~l~~~al~a-v~~~~~~~i~~~P~~~~~~~~~wl~---n~ 512 (1066)
T PLN02381 439 KKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNC--SSMAKQALDA-AIDGENKKLEFIPKQYLAEWKRWLE---NI 512 (1066)
T ss_pred hCCCEecceeeecCCCeeCCCCceEEEeecccceEEc--hHHHHHHHHH-HhhccCCceEEEChHHHHHHHHHHh---cC
Confidence 011259999999999999999999999 8999999998 5 333 578889999999998 99
Q ss_pred CCcccccCCCCCCeecCCC---------------------------------------------CCcEEEEEeecccchh
Q psy2393 245 NDWDISRDAPYFGIKIPNT---------------------------------------------LEKYFYVWLDAPIGYL 279 (576)
Q Consensus 245 ~dw~isR~~~~WG~~iP~~---------------------------------------------~~~~~~vw~d~~~~~~ 279 (576)
+|||||||+ +||+|||.. +..++++||++.+.++
T Consensus 513 ~DWcISRQr-~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~ 591 (1066)
T PLN02381 513 RDWCISRQL-WWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPL 591 (1066)
T ss_pred ccceeeeec-ccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHH
Confidence 999999999 999999951 0124567777766665
Q ss_pred hhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCC-cEEeeeccEEe-CCcccc
Q psy2393 280 ASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLP-NNIFVHGFMTI-NGKKMS 357 (576)
Q Consensus 280 ~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g~v~~-~g~KMS 357 (576)
+.++ +... ..+++.+||.+ +++.|.||+|||-.....+...+....| +.++.||||++ +|+|||
T Consensus 592 ~~lg-~P~~---------~~~~~~~~P~d----~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMS 657 (1066)
T PLN02381 592 SVLG-WPDD---------TDDLKAFYPTS----VLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMS 657 (1066)
T ss_pred HHhc-CCCC---------HHHHhccCCCe----eeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCCCCCC
Confidence 5443 1110 13455566654 8889999998753332222222334455 89999999999 999999
Q ss_pred ccCCCccChhHHhh-------------------------------------cCCChhHHHHHHHhhCCCCCCCcccchhh
Q psy2393 358 KSNKIGISPLYYLK-------------------------------------IGMNPEWLRYYIASKLNNKIEDIDFNSQS 400 (576)
Q Consensus 358 KS~gn~i~~~dll~-------------------------------------~g~g~d~lR~~l~~~~~~~~~d~~fs~~~ 400 (576)
||+||+|+|.++++ + ||+|+||||+++..+.+ +|++|+.++
T Consensus 658 KS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~-yGADalR~~l~~~~~~~-~di~~~~~~ 735 (1066)
T PLN02381 658 KSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAE-CGTDALRFALVSYTAQS-DKINLDILR 735 (1066)
T ss_pred CCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccc-cChHHHHHHHHcCCccc-cccCccHHH
Confidence 99999999999998 7 99999999999876555 588999988
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHcCC--CCC-Cccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--
Q psy2393 401 FISCVNSDLIGKYINIASRSSSFIEKYFKG--YLN-MKWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT-- 474 (576)
Q Consensus 401 ~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~--~~~-~~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~-- 474 (576)
+... ++++++++|++..+...+...+.. .++ ..+. .| +|++++|+.+.+.+.++|++|+|+.|++.|++|+
T Consensus 736 v~~~--r~f~nKlwNa~rf~~~~~~~~~~~~~~~~~~~~~~~D-rWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~ 812 (1066)
T PLN02381 736 VVGY--RQWCNKLWNAVRFAMSKLGDDYTPPATLSVETMPFSC-KWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQY 812 (1066)
T ss_pred HHHH--HHHHHHHHHHHHHHHhhcccccCcccccCccccCHHH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7633 678999999985543322111110 111 1122 26 9999999999999999999999999999999995
Q ss_pred HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcC
Q psy2393 475 NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLN 533 (576)
Q Consensus 475 ~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~ 533 (576)
++||+|++.+|+|.+.+..........+..++..+|..+++||+|||||+||+||+.|+
T Consensus 813 dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~ 871 (1066)
T PLN02381 813 QFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLP 871 (1066)
T ss_pred HhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Confidence 89999999999997754321001112334566688889999999999999999999996
|
|
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-76 Score=680.32 Aligned_cols=488 Identities=19% Similarity=0.254 Sum_probs=389.5
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-----cCCCH--
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-----AGMTP-- 81 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-----~g~~~-- 81 (576)
.++++|+|++|||||||.|||||+++++++|+++||+||+| ++|+|++|||+||++++.++++ .|.++
T Consensus 57 ~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G-----~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~ 131 (995)
T PTZ00419 57 NSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKG-----DETLWVPGTDHAGIATQVVVEKKLMKEENKTRHD 131 (995)
T ss_pred CCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcC-----CcccCCCCCCCCchhhHHHHHHHHHHhcCCChHH
Confidence 35678999999999999999999999999999999999999 9999999999999999766543 35443
Q ss_pred ----------HHHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 82 ----------KEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 82 ----------~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
.++++++...++++|++||+++| +.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|
T Consensus 132 ~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~-~~Gliyr~~~~V~wcp~~~Tal 210 (995)
T PTZ00419 132 LGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLY-EDGLIYRDTRLVNWCCYLKTAI 210 (995)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHH-HCCCEEecceeeecCCCCCCCC
Confidence 35789999999999999998555 8999999999999999999999 9999999999999999999999
Q ss_pred cccceecc------------------------------------------CC----------------------------
Q psy2393 150 PDRYIKGE------------------------------------------CP---------------------------- 159 (576)
Q Consensus 150 ~~~~v~~~------------------------------------------~p---------------------------- 159 (576)
++.||++. .|
T Consensus 211 sd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~ 290 (995)
T PTZ00419 211 SDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIH 290 (995)
T ss_pred chhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEEC
Confidence 99998721 01
Q ss_pred -C-CCC-----------CCCCCCcccc--------------------------CCCcCCC-C------------------
Q psy2393 160 -I-CNA-----------KDQYGDFCEC--------------------------CSSIYTP-T------------------ 181 (576)
Q Consensus 160 -~-c~~-----------~~~~g~~c~~--------------------------cg~~~~~-~------------------ 181 (576)
. .+. ...+|..|.. .|++... .
T Consensus 291 Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L 370 (995)
T PTZ00419 291 PFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEEL 370 (995)
T ss_pred CccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHH
Confidence 0 000 0001111110 1111000 0
Q ss_pred ------------ccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC--C-CCChhHHHHHHHHHhhcCCCCC
Q psy2393 182 ------------KLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--K-RLQPEIVNKIKEWLEKDNKFND 246 (576)
Q Consensus 182 ------------~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~d 246 (576)
....|+|||||++++++.++|||+++ +.+++.+.++ ++. . ++|+..++++.+|++ +++|
T Consensus 371 ~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~--~~~~~~al~~-v~~~~i~~~P~~~~~~~~~wl~---~l~D 444 (995)
T PTZ00419 371 KEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNC--KDMAKRAVEA-VRNGELKIIPSSHENVWYHWLE---NIQD 444 (995)
T ss_pred HhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEec--HHHHHHHHHH-hhcCCeEEEChHHHHHHHHHHh---cccc
Confidence 01248999999999999999999999 9999999999 653 3 578889999999998 8999
Q ss_pred cccccCCCCCCeecCCC---------------------------------------------CCcEEEEEeecccchhhh
Q psy2393 247 WDISRDAPYFGIKIPNT---------------------------------------------LEKYFYVWLDAPIGYLAS 281 (576)
Q Consensus 247 w~isR~~~~WG~~iP~~---------------------------------------------~~~~~~vw~d~~~~~~~~ 281 (576)
||||||+ +||+|||.. +.+++++|||+...+++.
T Consensus 445 WcISRQr-~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~ 523 (995)
T PTZ00419 445 WCISRQL-WWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFST 523 (995)
T ss_pred ceeeeec-ccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHH
Confidence 9999999 999999962 127889999999888776
Q ss_pred cchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhc----CCCCC-cEEeeeccEEe-CCcc
Q psy2393 282 LKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFS----GRKLP-NNIFVHGFMTI-NGKK 355 (576)
Q Consensus 282 ~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~----~~~~p-~~~~~~g~v~~-~g~K 355 (576)
++. ... ..+++.|||.+ +++.|+||++| |++.++.+ ....| +.+++||||.+ +|+|
T Consensus 524 ~g~-p~~---------~~~~~~~~P~d----~~~~G~Dii~~----W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~K 585 (995)
T PTZ00419 524 LGW-PDQ---------TDDLQRFFPTS----LLETGSDILFF----WVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEK 585 (995)
T ss_pred hCC-CCC---------hHHHhhcCCCc----EEEechhHHhH----HHHHHHHHHHHhcCCCChHHHhccceEECCCCCC
Confidence 541 111 13567778765 99999999986 44433322 22566 89999999999 9999
Q ss_pred ccccCCCccChhHHhh-------------------------------------cCCChhHHHHHHHhhCCCCCCCcccch
Q psy2393 356 MSKSNKIGISPLYYLK-------------------------------------IGMNPEWLRYYIASKLNNKIEDIDFNS 398 (576)
Q Consensus 356 MSKS~gn~i~~~dll~-------------------------------------~g~g~d~lR~~l~~~~~~~~~d~~fs~ 398 (576)
||||+||+|+|.++++ + ||+|++|||+++..+.+ .|++|+.
T Consensus 586 MSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~-yGaDalR~~l~~~~~~~-~Di~~~~ 663 (995)
T PTZ00419 586 MSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPE-CGTDALRFGLLAYTQQG-RNINLDI 663 (995)
T ss_pred cccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcc-cCcHHHHHHHHhcCCCC-CCccccH
Confidence 9999999999999999 7 99999999999876554 7899999
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCC---C----C-CcccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2393 399 QSFISCVNSDLIGKYINIASRSSSFIEKYFKGY---L----N-MKWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYI 469 (576)
Q Consensus 399 ~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~---~----~-~~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~ 469 (576)
+.+... ++++++++|+++++...+.+...+. . + ..+.. | +|++++++.+.+.+.++|++|+|+.|++.
T Consensus 664 ~~v~~~--~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~wIls~L~~~i~~v~~~~e~y~f~~A~~~ 740 (995)
T PTZ00419 664 NRVVGY--RHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWED-KWILHRLNVAIKEVTEGFKEYDFSEATQA 740 (995)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 887643 7799999999988765443321111 0 0 11222 5 99999999999999999999999999999
Q ss_pred HHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 470 VIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 470 l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
|++|+ +++|+|++.+|+|.....+ . ...+.+..++..+|+.++++|+|||||+||+||+.|+.
T Consensus 741 i~~F~~~~~~n~Yie~~K~~l~~~~~-~-~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~ 805 (995)
T PTZ00419 741 TYNFWLYELCDVYLELIKPRLSKQSD-G-ERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPN 805 (995)
T ss_pred HHHHHHHhhHHHHHHHhhhhhhcCCC-c-HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhc
Confidence 99985 8999999999998732221 1 22344567778899999999999999999999999973
|
|
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-75 Score=669.25 Aligned_cols=496 Identities=19% Similarity=0.243 Sum_probs=385.0
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-cCC--------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-AGM-------- 79 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-~g~-------- 79 (576)
+++++|++++||||+||.|||||+++++++|+++||+||+| ++|.|++|||+||+||+.++++ .|.
T Consensus 99 ~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G-----~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~ 173 (1205)
T PTZ00427 99 KNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCG-----FSVERKFGWDCHGLPIEYEIEKENNINKKEDILK 173 (1205)
T ss_pred CCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCC-----CeeccCCccCCCCcHHHHHHHHHhCCCcccchhh
Confidence 45677999999999999999999999999999999999999 9999999999999999999986 332
Q ss_pred --------CHHHHHHHHHHHHHHHHhhcC--ccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 80 --------TPKEFINNISSNRKKYLDGFY--IKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 80 --------~~~~~~~~~~~~~~~~l~~lg--i~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
.|.+++.+|.+.+++++++|| ++||+.|.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|.|
T Consensus 174 ~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~-ekGlIYr~~k~V~wcp~c~TaL 252 (1205)
T PTZ00427 174 MGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELY-KNNYVYKSFKVMPYSCKCNTPI 252 (1205)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHH-HCCCEEecceeeccCCCCCCch
Confidence 246788999999999999999 68899999999999999999999999 9999999999999999999999
Q ss_pred ccccee--cc----------------------------------------------------------------------
Q psy2393 150 PDRYIK--GE---------------------------------------------------------------------- 157 (576)
Q Consensus 150 ~~~~v~--~~---------------------------------------------------------------------- 157 (576)
+++||. +.
T Consensus 253 S~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliw 332 (1205)
T PTZ00427 253 SNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAW 332 (1205)
T ss_pred hHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeeccccccccccccccccccccccCCCCEEEEE
Confidence 999881 10
Q ss_pred --CC----CC----CCCC------------------------------------------------------C-------
Q psy2393 158 --CP----IC----NAKD------------------------------------------------------Q------- 166 (576)
Q Consensus 158 --~p----~c----~~~~------------------------------------------------------~------- 166 (576)
.| .| ..++ .
T Consensus 333 TTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~ 412 (1205)
T PTZ00427 333 TTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEK 412 (1205)
T ss_pred ECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCccccccc
Confidence 01 00 0000 0
Q ss_pred -------------------CCCc----cc----------------------------cCCCcCCCC-c------------
Q psy2393 167 -------------------YGDF----CE----------------------------CCSSIYTPT-K------------ 182 (576)
Q Consensus 167 -------------------~g~~----c~----------------------------~cg~~~~~~-~------------ 182 (576)
.|.. |+ ..|++.+.. +
T Consensus 413 ~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~dA~~~ 492 (1205)
T PTZ00427 413 YNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKEADNV 492 (1205)
T ss_pred cccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccCCCCHHHhHHH
Confidence 0000 00 011111000 0
Q ss_pred ------------------cCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhH-HHHHHHHHhhcC
Q psy2393 183 ------------------LINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEI-VNKIKEWLEKDN 242 (576)
Q Consensus 183 ------------------l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~-~~~~~~~l~~~~ 242 (576)
...|+|||||+|++++.++|||+++ +.+++.+.+. .+.. ++|+.. .+++.+||+
T Consensus 493 Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~--~~~k~~~l~~-~~~i~w~P~~~~~~r~~~wl~--- 566 (1205)
T PTZ00427 493 IKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRV--SNSTNELVKN-NETTYWIPAHIKEKKFHNWIK--- 566 (1205)
T ss_pred HHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeC--cHHHHHHHHc-CCccEEeCchhhHhHHHHHHh---
Confidence 0249999999999999999999999 8899998887 7776 457777 589999998
Q ss_pred CCCCcccccCCCCCCeecCCC----C--------------------------------------C----------cEEEE
Q psy2393 243 KFNDWDISRDAPYFGIKIPNT----L--------------------------------------E----------KYFYV 270 (576)
Q Consensus 243 ~~~dw~isR~~~~WG~~iP~~----~--------------------------------------~----------~~~~v 270 (576)
+++|||||||+ +||+|||.. . + .++++
T Consensus 567 n~~DWcISRqR-~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~ 645 (1205)
T PTZ00427 567 DAKDWCISRNR-YWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDC 645 (1205)
T ss_pred cCccceeeecc-ccCccceeEEcCCCCeEeccCCHHHHHHHhccccchhhcccccChhhccCCccccccceeecCceEEE
Confidence 88999999999 999999930 0 0 16778
Q ss_pred EeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCC-cEEeeeccE
Q psy2393 271 WLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLP-NNIFVHGFM 349 (576)
Q Consensus 271 w~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g~v 349 (576)
|||+.....+..+. .... ....|+.++|.+ +...|.||+++|-.....+..++....| +.+++||||
T Consensus 646 WFdSg~~p~a~~~~-P~~~-------~~~~f~~~fPaD----~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~V 713 (1205)
T PTZ00427 646 WFESGSMPYAKVHY-PFST-------EKEDFHKIFPAD----FIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLV 713 (1205)
T ss_pred EEeCCCChHHHhCC-Cccc-------chhhHhccCCce----EEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEE
Confidence 88887766554321 1100 014566667764 8899999997764332222222333455 999999999
Q ss_pred Ee-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHc
Q psy2393 350 TI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYF 428 (576)
Q Consensus 350 ~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~ 428 (576)
++ +|+|||||+||+|+|.+++++ ||+|+||||+++..+....|++|+.+.+.+.. +.++++++|.+..+...+..+.
T Consensus 714 ld~dG~KMSKSlGNvIDP~evI~k-YGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~-r~~l~klwN~~rF~~~~i~~~~ 791 (1205)
T PTZ00427 714 LASDGKKMSKRLKNYPDPLYILDK-YGADSLRLYLINSVAVRAENLKFQEKGVNEVV-KSFILPFYHSFRFFSQEVTRYE 791 (1205)
T ss_pred EcCCCCCcccCCCCCCCHHHHHHh-cCCcHHHHHHHhcCCCCCcccccCHHHHHHHH-HHHHHHHHHHHHHHHhcccccc
Confidence 99 999999999999999999999 99999999999864434478899999876655 5567888888755443222110
Q ss_pred C----CC--CC----Cccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhcCccccccCcccH
Q psy2393 429 K----GY--LN----MKWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT-NFINIFFDQNKPWKLAKNNIYH 496 (576)
Q Consensus 429 ~----~~--~~----~~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~-~~~n~y~~~~k~~~~~~~~~~~ 496 (576)
. +. .+ .... .| +|+++.++++.+.+.++|++|+++.|++.|++|+ .++|+|++.+|++.+.... .
T Consensus 792 ~~~~~~f~~~~~~~~~~~~~~D-rWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~--~ 868 (1205)
T PTZ00427 792 CLNKKQFLFNTDYIYKNDNIMD-QWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLG--E 868 (1205)
T ss_pred ccccccCCcCcccccccCCHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCC--c
Confidence 0 00 00 1112 25 9999999999999999999999999999999999 5999999999986654321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 497 EKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 497 ~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
....+++++|.++|+.++++|+|||||+||+||+.|+.
T Consensus 869 ~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~ 906 (1205)
T PTZ00427 869 ENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRR 906 (1205)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhh
Confidence 23456778889999999999999999999999999963
|
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-73 Score=647.39 Aligned_cols=487 Identities=18% Similarity=0.229 Sum_probs=382.4
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcC-----------
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAG----------- 78 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g----------- 78 (576)
.+++|+|+.||||+||.|||||+++++++|+++||+||+| ++|+|++|||+||+||+..|++..
T Consensus 23 ~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G-----~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~ 97 (938)
T TIGR00395 23 DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKG-----KNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYT 97 (938)
T ss_pred CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcC-----CccCCCCccCCCCCchHHHHHHhhhhhhhccccch
Confidence 4678999999999999999999999999999999999999 999999999999999999887621
Q ss_pred -------------CCHHHHHHHHHHHHHHHHhhcCccc--cccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecC
Q psy2393 79 -------------MTPKEFINNISSNRKKYLDGFYIKF--DNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDP 143 (576)
Q Consensus 79 -------------~~~~~~~~~~~~~~~~~l~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~ 143 (576)
.+|.++++++...++++|++||+++ ++.+.|+++.|.+.+++.|.+|+ ++|+||++..+++|||
T Consensus 98 ~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~-e~G~iy~g~~~v~wcp 176 (938)
T TIGR00395 98 EVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLK-ELGLIVKGEHPVRYCP 176 (938)
T ss_pred hhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHH-HCCCEecCCeeEeecC
Confidence 3567888999999999999999955 57888999999999999999999 9999999999999999
Q ss_pred CCCccccccceecc---------------------------C-------------CCC--------CC------------
Q psy2393 144 IKNIFLPDRYIKGE---------------------------C-------------PIC--------NA------------ 163 (576)
Q Consensus 144 ~~~~~l~~~~v~~~---------------------------~-------------p~c--------~~------------ 163 (576)
.|+|.++++++++. . |.. +.
T Consensus 177 ~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~s~~~~~~~ 256 (938)
T TIGR00395 177 KDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWITSKEAFENL 256 (938)
T ss_pred CCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEEeHHHHHhh
Confidence 99999999988520 0 100 00
Q ss_pred ---------------C-------------------------CCCCCccc-------------------------------
Q psy2393 164 ---------------K-------------------------DQYGDFCE------------------------------- 172 (576)
Q Consensus 164 ---------------~-------------------------~~~g~~c~------------------------------- 172 (576)
. ..+|..|.
T Consensus 257 ~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~ 336 (938)
T TIGR00395 257 SYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVI 336 (938)
T ss_pred hhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhc
Confidence 0 00010000
Q ss_pred -------------------------------------------------------cCCCcCC------------------
Q psy2393 173 -------------------------------------------------------CCSSIYT------------------ 179 (576)
Q Consensus 173 -------------------------------------------------------~cg~~~~------------------ 179 (576)
.||.+--
T Consensus 337 ~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i~~~L~~~g 416 (938)
T TIGR00395 337 DIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKADLIDAG 416 (938)
T ss_pred ccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHHHHHHHHCC
Confidence 0001000
Q ss_pred ----CCcc-CCCcccCCCCccEEe-eecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccC
Q psy2393 180 ----PTKL-INPYSILSGTKPIIK-SSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRD 252 (576)
Q Consensus 180 ----~~~l-~~p~~~~~~~~~~~~-~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~ 252 (576)
..+. ..|+|+|||++++++ .++|||++++++++++.+.++ +++. ++|+..++.+.+|++ +++|||||||
T Consensus 417 ~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~-l~~~~~~P~~~~~~~~~~l~---~l~DW~ISRq 492 (938)
T TIGR00395 417 LADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHEC-LEGMRIIPEEVKNAFEGKID---WLKDWACCRR 492 (938)
T ss_pred CceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHH-HhcCEEeCHHHHHHHHHHHh---hhhhcccccc
Confidence 0011 237899999999998 999999999444799999999 7766 678889999999998 8999999999
Q ss_pred CCCCCeecCCCC--------CcEEEEEeecccchhhhcchhhh------------hCCCC--Ccccc------ccccccc
Q psy2393 253 APYFGIKIPNTL--------EKYFYVWLDAPIGYLASLKNFFE------------KGGPK--KKYNE------LRNFDEF 304 (576)
Q Consensus 253 ~~~WG~~iP~~~--------~~~~~vw~d~~~~~~~~~~~~~~------------~~g~~--~~~~~------~~~~~~~ 304 (576)
+ +||+|+|.++ +.++|+|+++...|+...+.-.. ..|.. +.++. ..+|+.|
T Consensus 493 r-~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~~~~~~l~~ev~D~~~~~~~~~~~t~~~~~~~~~~~~ef~~~ 571 (938)
T TIGR00395 493 Y-GLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYYGNEQMTDEFFDYIFLGKGDVKNTNIPLPAIQKLRREFEYW 571 (938)
T ss_pred c-ccCcccceeecEEeeecchhhhhhhhccHHHHhhccCCChHHCCcccCceEEECCCChhhcCCCHHHHHHHHHHHhhc
Confidence 9 9999999643 46788999887777654321000 01100 00111 1356777
Q ss_pred ccCCCcceEEEeeecCcchhHhHHHHHHHhcCC---CCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHH
Q psy2393 305 ISSPNTEQYHFIGKDIFYFHILFWPAILKFSGR---KLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRY 381 (576)
Q Consensus 305 w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~---~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~ 381 (576)
||.+ +|++|+||++||+.+|.. ++.+.. +.|+.+++||||+++|+|||||+||+|+|.+++++ ||+|++||
T Consensus 572 yP~D----~~~~GkDii~~H~~~~i~-~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~-yGaDalRl 645 (938)
T TIGR00395 572 YPLD----WRISGKDLIPNHLTFYIF-HHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEK-FGADVARL 645 (938)
T ss_pred CCce----EEEEeeccccchHHHHHH-HHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHH-cChHHHHH
Confidence 8754 999999999999999954 444433 36799999999999999999999999999999999 99999999
Q ss_pred HHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc-CChHHHHHHHHHHHHHHHHHHHh
Q psy2393 382 YIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWV-KDNDTFLSKLRVVSSSIQKYYEN 460 (576)
Q Consensus 382 ~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~v~~a~~~ 460 (576)
||++.++ ..+|++|+++.+.+..+ .+.+++|++.|+.... +........ .| +|+++.++.+.+.+.++|++
T Consensus 646 ~Ll~~~~-~~~D~~fs~~~~~~~~~--~l~~l~n~~~~~~~~~----~~~~~~~~~~~D-~wlls~l~~~i~~v~~a~e~ 717 (938)
T TIGR00395 646 YIADAAE-TVQDADWKESEVEGTIL--RLERLYEFAEEITKES----NLETGEETSFID-RWLESRMNAAIKETYEAMEN 717 (938)
T ss_pred HHHhcCC-CCCCCCcCHHHHHHHHH--HHHHHHHHHHHHHhhc----ccCCCccCChHH-HHHHHHHHHHHHHHHHHHHc
Confidence 9998754 55889999998877654 3778888877754321 111111122 25 99999999999999999999
Q ss_pred hhHHHHH-HHHHHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 461 RNFNKVL-YIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 461 ~~~~~~~-~~l~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
|+++.|+ ..+++|+..+|+|++..++ +.. .++.++++.+++||+|||||+||+||+.||.+
T Consensus 718 ~~~~~Al~~~l~~~~~~~n~Yl~~~~~-----------~~~---~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~~ 779 (938)
T TIGR00395 718 FQTRKAVKYALFDLQADVDWYRRRGGV-----------NHK---DVLARYLETWIKLLAPFAPHFAEEMWEEVGNE 779 (938)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCcc-----------hHH---HHHHHHHHHHHHHhcCcccHHHHHHHHHcCCC
Confidence 9999999 7799999889999765321 112 24668999999999999999999999999854
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-70 Score=554.46 Aligned_cols=316 Identities=34% Similarity=0.611 Sum_probs=289.1
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
+++|++|||||||++||||+++++++|+++||+|++| ++|.+++|+||||+||+.+|+++|++|+++++.+.+.|
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G-----~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~ 75 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRG-----YDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIF 75 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCC-----CcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccc
Q psy2393 93 KKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCE 172 (576)
Q Consensus 93 ~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~ 172 (576)
+++|++|||++|.+++|+++.|...++++|++|. ++|++|+++..++||+.|+++|+
T Consensus 76 ~~~l~~LgI~~D~~~~tt~~~~~~~v~~i~~~L~-ekG~iY~~~~~~~yc~~~~~~l~---------------------- 132 (319)
T cd00814 76 KDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLY-ENGYIYEGEYEGLYCVSCERFLP---------------------- 132 (319)
T ss_pred HHHHHHcCCcCCCCeeCCCHHHHHHHHHHHHHHH-HCCCEEeeeeeeeECCCCCcEee----------------------
Confidence 9999999999999999999999999999999999 99999999999999988887765
Q ss_pred cCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC---CCChhHHHHHHHHHhhcCCCCCccc
Q psy2393 173 CCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK---RLQPEIVNKIKEWLEKDNKFNDWDI 249 (576)
Q Consensus 173 ~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~dw~i 249 (576)
+++.++||||+| +++++.+.++ +++. .+|+..++.+.+|++ ++++||||
T Consensus 133 -----------------------e~~~~~~~ff~l--~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~~l~--~~l~d~~i 184 (319)
T cd00814 133 -----------------------EWREEEHYFFRL--SKFQDRLLEW-LEKNPDFIWPENARNEVLSWLK--EGLKDLSI 184 (319)
T ss_pred -----------------------EEEeeeeEEEEh--HHHHHHHHHH-HHhCCccCCCHHHHHHHHHHHh--CCCcccCC
Confidence 678899999999 9999999999 6554 589999999999999 78999999
Q ss_pred ccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHH
Q psy2393 250 SRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWP 329 (576)
Q Consensus 250 sR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~ 329 (576)
||+...||+|+|.++++++|||||++++|++..+.+....|. ..+|.+.....+|++|+|+++||+++|+
T Consensus 185 sR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~----------~~~~~~~~~~~v~~~G~D~~~fh~~~~p 254 (319)
T cd00814 185 TRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGN----------SWWWKDGWPELVHFIGKDIIRFHAIYWP 254 (319)
T ss_pred CccCcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccc----------hhhhhcCCCceEEEEeechhhhhHHHHH
Confidence 999768999999999999999999999999887755433321 0234333345699999999999999999
Q ss_pred HHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCccc
Q psy2393 330 AILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDF 396 (576)
Q Consensus 330 a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~f 396 (576)
|++++++.++|+.+++|||++++|+|||||+||+|++.++++. ||+|++|||+++..|.. +|.+|
T Consensus 255 a~l~~~~~~~~~~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~-~~~d~~R~~l~~~~~~~-~d~~f 319 (319)
T cd00814 255 AMLLGAGLPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLER-YGADALRYYLLRERPEG-KDSDF 319 (319)
T ss_pred HHHHhCCCCCCcEeeeeeeEEECCeeecccCCcccCHHHHHHH-cCchHHHHHHHhcCCCC-CCCCC
Confidence 9999999988999999999999999999999999999999999 99999999999987765 55565
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-69 Score=560.43 Aligned_cols=323 Identities=23% Similarity=0.336 Sum_probs=287.2
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc---------CCCH-
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA---------GMTP- 81 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~---------g~~~- 81 (576)
++|+|++|||||||+|||||+++++++|+++||+|++| ++|.|++|+|+||+||+..|++. ++++
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G-----~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~ 75 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKG-----YNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGRE 75 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcC-----CcccccCccCCCCChHHHHHHHHhcccccchhcCCHH
Confidence 47999999999999999999999999999999999999 99999999999999999999874 3443
Q ss_pred ------HHHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccc
Q psy2393 82 ------KEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRY 153 (576)
Q Consensus 82 ------~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~ 153 (576)
+++++++.+++++++++|||++| ++++|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+++|+++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~-~~G~iy~~~~~~~yc~~~~t~l~~~e 154 (382)
T cd00817 76 EFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLY-EKGLIYRDNRLVNWCPKLRTAISDIE 154 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHH-HCCCEEeeeeEEeecCCcCCCCCcch
Confidence 46899999999999999999766 9999999999999999999999 99999999999999999999999765
Q ss_pred eeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC--C-CCChhH
Q psy2393 154 IKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--K-RLQPEI 230 (576)
Q Consensus 154 v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~-~~~~~~ 230 (576)
| |++||++++++.++||||+| +++++.+.++ +++ . ++|+..
T Consensus 155 v---------------------------------c~~cg~~~~~~~~~qwf~~l--~~~~~~l~~~-~~~~~~~~~P~~~ 198 (382)
T cd00817 155 V---------------------------------CSRSGDVIEPLLKPQWFVKV--KDLAKKALEA-VKEGDIKFVPERM 198 (382)
T ss_pred h---------------------------------cccCCCeEEEEecCeeEEeh--HHHHHHHHHH-HhcCCcEEEChHH
Confidence 5 67889999999999999999 9999999999 766 3 478889
Q ss_pred HHHHHHHHhhcCCCCCcccccCCCCCCeecCC----C--------------------------------CCcEEEEEeec
Q psy2393 231 VNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN----T--------------------------------LEKYFYVWLDA 274 (576)
Q Consensus 231 ~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~----~--------------------------------~~~~~~vw~d~ 274 (576)
++.+.+||+ +++||||||++ +||+|+|. + +++++||||||
T Consensus 199 ~~~~~~~l~---~l~Dw~ISR~~-~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds 274 (382)
T cd00817 199 EKRYENWLE---NIRDWCISRQL-WWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSS 274 (382)
T ss_pred HHHHHHHHh---hCccceeeecc-ccCCccceEEeCCCCcEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecC
Confidence 999999999 59999999999 99999996 3 37899999999
Q ss_pred ccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCC-cEEeeeccEEe-C
Q psy2393 275 PIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLP-NNIFVHGFMTI-N 352 (576)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g~v~~-~ 352 (576)
.++|++..+. ... ...|+.+||.+ +|++|+||++||+.++.++..++....| ..+++||+|+. +
T Consensus 275 ~~~~~~~~~~-~~~---------~~~~~~~~p~d----~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~ 340 (382)
T cd00817 275 SLWPFSTLGW-PEE---------TKDLKKFYPTS----LLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDED 340 (382)
T ss_pred CCcHHHHhCC-CCc---------chhHhhcCCCC----eeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCC
Confidence 9999987642 111 13578889764 9999999999999998887776654455 89999999995 9
Q ss_pred CccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCccc
Q psy2393 353 GKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDF 396 (576)
Q Consensus 353 g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~f 396 (576)
|+|||||+||+|+++|++++ +|+|++|||+++.++.+ .|.+|
T Consensus 341 g~KMSKS~Gn~v~~~dll~~-~g~Da~R~~ll~~~~~~-~D~~f 382 (382)
T cd00817 341 GRKMSKSLGNVIDPLDVIDG-YGADALRFTLASAATQG-RDINL 382 (382)
T ss_pred CCCccccCCCCCCHHHHHHh-cCcHHHHHHHHhCCCcc-CCCCC
Confidence 99999999999999999999 99999999999976554 55554
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-68 Score=600.09 Aligned_cols=456 Identities=22% Similarity=0.277 Sum_probs=340.8
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
+++++++|+++||||||.|||||+++++++|+++||+||+| ++|.|++|||+||+||+.+|.+.|.+|.++++++
T Consensus 26 ~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G-----~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~ 100 (842)
T TIGR00396 26 SNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKG-----YNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYEN 100 (842)
T ss_pred CCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcC-----CceeccCCcCCCChHHHHHHHHcCCCHHHHHHHH
Confidence 45677999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccc--cccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCC
Q psy2393 89 SSNRKKYLDGFYIKF--DNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQ 166 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~ 166 (576)
.+.++++|++||+++ |++++|++++|.+.++++|.+|+ ++|+||++..+++|||.|+|+|++++|.
T Consensus 101 ~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~-~kGliy~~~~~v~wcp~~~t~La~~ev~----------- 168 (842)
T TIGR00396 101 IANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELF-EKGLAYVKEADVNWCPNDGTVLANEQVD----------- 168 (842)
T ss_pred HHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHH-HCCCeEeeccceEEeCCCCCCccHHHHh-----------
Confidence 999999999999854 68999999999999999999999 9999999999999999999999987762
Q ss_pred CCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHH-------------
Q psy2393 167 YGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVN------------- 232 (576)
Q Consensus 167 ~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~------------- 232 (576)
.+++||+||.+++.+..+||||++ +++++++.+. ++.. .||+++++
T Consensus 169 -----------------~~g~~~~~g~~v~~~~~~~~f~~i--~~~~~~l~~~-l~~~~~wp~~v~~~q~~wig~s~g~~ 228 (842)
T TIGR00396 169 -----------------SDGRSWRGGTPVEKKELKQWFLKI--TAYAEELLND-LEELDHWPESVKEMQRNWIGKSEGVE 228 (842)
T ss_pred -----------------hcCccccCCCcceEeecceeEEeh--hhhHHHHHHH-HhhhccccHHHHHHHHhcccccceEE
Confidence 124678899999999999999999 8888776654 2111 12211111
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 233 -------------------------------------------------------------------------------- 232 (576)
Q Consensus 233 -------------------------------------------------------------------------------- 232 (576)
T Consensus 229 i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 308 (842)
T TIGR00396 229 ITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIH 308 (842)
T ss_pred EEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCCEEEC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 233 -------------------------------------------------------------------------------- 232 (576)
Q Consensus 233 -------------------------------------------------------------------------------- 232 (576)
T Consensus 309 P~~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~~~~~~Gl~~~~ 388 (842)
T TIGR00396 309 PLTGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVNSGEFNGLNSSE 388 (842)
T ss_pred CCCCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEecchhcCCCCHHH
Confidence
Q ss_pred ---HHHHHHhh--------cCCCCCcccccCCCCCCeecCCC---CCcEEEEEeecccc--------------hhhhcch
Q psy2393 233 ---KIKEWLEK--------DNKFNDWDISRDAPYFGIKIPNT---LEKYFYVWLDAPIG--------------YLASLKN 284 (576)
Q Consensus 233 ---~~~~~l~~--------~~~~~dw~isR~~~~WG~~iP~~---~~~~~~vw~d~~~~--------------~~~~~~~ 284 (576)
.+.++|++ ..+++|||||||| +||+|||.. +...+.+--+.+.. .+.....
T Consensus 389 A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQR-yWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~ 467 (842)
T TIGR00396 389 AREAIIAMLEKEGKGKRKVNYRLRDWLFSRQR-YWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQE 467 (842)
T ss_pred HHHHHHHHHHHcCCCCceEEeecccceeeccc-ccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhh
Confidence 11111111 1236799999999 999999961 11111000000000 0000000
Q ss_pred h----hhhCCCCCccccc-----------------------------ccccccccCCCcceEEEeeecCcchh---HhHH
Q psy2393 285 F----FEKGGPKKKYNEL-----------------------------RNFDEFISSPNTEQYHFIGKDIFYFH---ILFW 328 (576)
Q Consensus 285 ~----~~~~g~~~~~~~~-----------------------------~~~~~~w~~~~~~~i~~~G~D~~~fh---~~~~ 328 (576)
+ |..+|. .+.++ ..++.|+|.+ ++++|.||+-.| +.+|
T Consensus 468 ~~~~~cp~cg~--~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD----~yi~G~dhailHLlyaRf~ 541 (842)
T TIGR00396 468 WVNVTCPSCGK--PALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVD----LYIGGAEHAILHLLYARFW 541 (842)
T ss_pred hhcCcCccCCC--CcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccCCCc----EeeccHHHHHHHHHHHHHH
Confidence 0 111121 11111 1222222433 889999996444 3446
Q ss_pred HHHHHhcC---CCCC-cEEeeeccEEe-----CCc---------------------------cccccCCCccChhHHhhc
Q psy2393 329 PAILKFSG---RKLP-NNIFVHGFMTI-----NGK---------------------------KMSKSNKIGISPLYYLKI 372 (576)
Q Consensus 329 ~a~l~~~~---~~~p-~~~~~~g~v~~-----~g~---------------------------KMSKS~gn~i~~~dll~~ 372 (576)
...|...+ ...| +.+++||||+. +|+ |||||+||+|+|.+++++
T Consensus 542 ~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ 621 (842)
T TIGR00396 542 HKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKK 621 (842)
T ss_pred HHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHH
Confidence 55555443 2455 89999999998 788 999999999999999999
Q ss_pred CCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCC-Cccc-CChHHHHHHHHHH
Q psy2393 373 GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLN-MKWV-KDNDTFLSKLRVV 450 (576)
Q Consensus 373 g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~-~~~~-~d~~~l~~~l~~~ 450 (576)
||+|++|||+++.+ +...+++|+.+.+... ..++++++|++.++...+.. .. .++ ..+. .| +|++++++.+
T Consensus 622 -ygaDalRl~~l~~~-~~~~d~~~~~~~l~~~--~~~l~kl~~~~~~~~~~~~~-~~-~~~~~~l~~~d-~~il~~l~~~ 694 (842)
T TIGR00396 622 -HGADALRLYIMFMG-PIAASLEWNDSGLEGA--RRFLDRVWNLFYNILGELDG-KT-YLTPTILEEAQ-KELRRDVHKF 694 (842)
T ss_pred -cCchHHHHHHHhcC-CcCCCCccCHHHHHHH--HHHHHHHHHHHHHHHhhhcc-cc-cCCcccCCHHH-HHHHHHHHHH
Confidence 99999999999754 3558899999887544 55788999998665333211 00 011 1122 25 9999999999
Q ss_pred HHHHHHHHHhhh-HHHHHHHHHHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Q psy2393 451 SSSIQKYYENRN-FNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVE 529 (576)
Q Consensus 451 ~~~v~~a~~~~~-~~~~~~~l~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~ 529 (576)
.+.+.++|++|. |+.|++.+++|++...++. + . .++..++..+++||+||+||+|||||
T Consensus 695 i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~~---~--------------~---~~l~~~l~~ll~lLaPf~PhiaEElW 754 (842)
T TIGR00396 695 LKKVTEDLEKLESFNTAISAMMILLNALYKAK---K--------------D---ALYLEYLKGFLTVLSPFAPHLAEELW 754 (842)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh---h--------------H---HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999988 9999999999986444321 0 0 24557888999999999999999999
Q ss_pred HHcCCC
Q psy2393 530 TFLNIS 535 (576)
Q Consensus 530 ~~L~~~ 535 (576)
+.|+.+
T Consensus 755 ~~l~~~ 760 (842)
T TIGR00396 755 EKLGSE 760 (842)
T ss_pred HHhCCC
Confidence 999843
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-68 Score=596.13 Aligned_cols=445 Identities=21% Similarity=0.301 Sum_probs=339.7
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
+++++|+++||||||.|||||+++++++|+++||+||+| ++|.|++|||+||+||+.+|.+.|.+|.++++++.+
T Consensus 31 ~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G-----~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~ 105 (805)
T PRK00390 31 SKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQG-----YNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIA 105 (805)
T ss_pred CCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcC-----CcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 347999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCC
Q psy2393 91 NRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYG 168 (576)
Q Consensus 91 ~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g 168 (576)
.|+++|++||+++| ++++|++++|.+.++++|.+|+ ++|+||++..+++|||.|+|+|+++||+
T Consensus 106 ~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~-~~Gliy~~~~~v~wcp~~~t~La~~ev~------------- 171 (805)
T PRK00390 106 NMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLY-EKGLAYRKESPVNWCPVDGTVLANEQVI------------- 171 (805)
T ss_pred HHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHH-HCCCEEEecCEEEecCCcCCCCCHHHhh-------------
Confidence 99999999999555 8999999999999999999999 9999999999999999999999987663
Q ss_pred CccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHH----------------
Q psy2393 169 DFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIV---------------- 231 (576)
Q Consensus 169 ~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~---------------- 231 (576)
+++|++||.+++.+..+||||++ +++++++.+. ++.. .||++++
T Consensus 172 ----------------~~~~~~~~~~~~~~~~~~~f~~i--~~~~~~L~~~-l~~~~~w~~~v~~~~~~wig~~~~~~i~ 232 (805)
T PRK00390 172 ----------------DGRCWRCGAPVEKKELRQWFLKI--TDYADELLDD-LDKLEDWPEKVKTMQRNWIGRSEGAEVT 232 (805)
T ss_pred ----------------CCeecccCCeeEEEecceeeEec--chhHHHHHHH-HHhhccCcHHHHHHHHhhccccceEEEE
Confidence 35577888899999999999999 8887766554 2110 1111111
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 232 -------------------------------------------------------------------------------- 231 (576)
Q Consensus 232 -------------------------------------------------------------------------------- 231 (576)
T Consensus 233 f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P~ 312 (805)
T PRK00390 233 FKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIHPL 312 (805)
T ss_pred EEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEECCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 232 -------------------------------------------------------------------------------- 231 (576)
Q Consensus 232 -------------------------------------------------------------------------------- 231 (576)
T Consensus 313 ~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~ 392 (805)
T PRK00390 313 TGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSEE 392 (805)
T ss_pred CCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEeccccCCCCHHH
Confidence
Q ss_pred --HHHHHHHhh--------cCCCCCcccccCCCCCCeecCC----CCC--------------------------------
Q psy2393 232 --NKIKEWLEK--------DNKFNDWDISRDAPYFGIKIPN----TLE-------------------------------- 265 (576)
Q Consensus 232 --~~~~~~l~~--------~~~~~dw~isR~~~~WG~~iP~----~~~-------------------------------- 265 (576)
+.+.+.|++ ..+++|||||||| +||+|||. .++
T Consensus 393 a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR-~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 471 (805)
T PRK00390 393 AKEAIIAWLEEKGLGKRKVNYRLRDWGISRQR-YWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEW 471 (805)
T ss_pred HHHHHHHHHHHcCCCCCceEEECCCccccccc-cCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhh
Confidence 111111111 0125699999999 99999993 111
Q ss_pred ----------------cEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhH---h
Q psy2393 266 ----------------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHI---L 326 (576)
Q Consensus 266 ----------------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~---~ 326 (576)
.++++|||+. .|...... ....+. .-....++.|+|.+ ++++|.||+..|. .
T Consensus 472 ~~~~~~~~g~~~~re~Dv~DtwfdSs-w~~~~~~~-p~~~~~---~~~~~~~~~~~P~D----ly~~G~D~~i~hL~y~R 542 (805)
T PRK00390 472 VNVTCPKCGKPARRETDTMDTFVGSS-WYYLRYTD-PHNDEA---PFDKEAANYWLPVD----QYIGGIEHAVLHLLYAR 542 (805)
T ss_pred hCCCccccCCCceeCCcccccccccc-cHHHHhcC-cccccC---cCChHHhhCcCCCc----EEeccHHHHHHHHHHHH
Confidence 2234455543 22211100 000000 00012344444543 8999999974443 3
Q ss_pred HHHHHHHhcC---CCCC-cEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHh
Q psy2393 327 FWPAILKFSG---RKLP-NNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFI 402 (576)
Q Consensus 327 ~~~a~l~~~~---~~~p-~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~ 402 (576)
+|.+.+...+ ...| +.+++|||| |||||+||+|+|.+++++ ||+|++|||+++.+ ++..|++|+.+.+.
T Consensus 543 f~~~~l~~~~~~~~~~Pfk~v~~~G~v-----KMSKS~GN~i~p~~~i~~-ygaD~lRl~l~~~~-~~~~d~~~s~~~l~ 615 (805)
T PRK00390 543 FFTKVLRDLGLVSSDEPFKKLLTQGMV-----KMSKSKGNVVDPDDIIEK-YGADTARLFEMFAG-PPEKDLEWSDSGVE 615 (805)
T ss_pred HHHHHHHHhhcccCCcchhhheecCcE-----EeCCCCCCCCCHHHHHHH-cChHHHHHHHHhcC-CccCCcccCHHHHH
Confidence 4555555443 3455 899999999 999999999999999999 99999999999853 46688999998776
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc-cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q psy2393 403 SCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKW-VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFF 481 (576)
Q Consensus 403 ~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~-~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~ 481 (576)
.. ..++++++|++.... .... ...... ..| +|++++++.+.+.+.++|++|+|+.|++.|++|+...++|+
T Consensus 616 ~~--~~~l~kl~~~~~~~~----~~~~-~~~~~~~~~D-~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n~lsk~~ 687 (805)
T PRK00390 616 GA--YRFLQRVWRLVVDAK----GEAG-ALDVAALSED-KELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKAE 687 (805)
T ss_pred HH--HHHHHHHHHHHHHhh----hccc-ccCcccChhh-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 54 456888888875421 1111 111111 236 99999999999999999999999999999999998777776
Q ss_pred hhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 482 DQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 482 ~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
+ ..++ .++..++..++++|+||+||+||+||+.|+.+
T Consensus 688 ~--------------~~~~---~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~~ 724 (805)
T PRK00390 688 D--------------EQDK---AVLREALEILVRLLAPFAPHLAEELWEKLGHE 724 (805)
T ss_pred H--------------HHHH---HHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 1 1122 35567899999999999999999999999854
|
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=598.65 Aligned_cols=467 Identities=19% Similarity=0.254 Sum_probs=357.1
Q ss_pred ccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc---------------CC---------CHH
Q psy2393 27 LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA---------------GM---------TPK 82 (576)
Q Consensus 27 lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~---------------g~---------~~~ 82 (576)
|||||+++++++|+++||+||+| ++|+|++|||+||+||+..|++. |+ +|.
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G-----~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~ 75 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRG-----YNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPE 75 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCC-----CcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHH
Confidence 79999999999999999999999 99999999999999999998642 33 467
Q ss_pred HHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceecc---
Q psy2393 83 EFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGE--- 157 (576)
Q Consensus 83 ~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~--- 157 (576)
+++++|.+.++++|++||+ +|++.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|.|+++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~-ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~ 154 (897)
T PRK12300 76 YIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLK-EKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEP 154 (897)
T ss_pred HHHHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHH-HCCCEecCCEeeeeCCCCCCCchHHHHhcCCCC
Confidence 7899999999999999998 6668899999999999999999999 999999999999999999999999887420
Q ss_pred -----------------------CC-------------CCC----------------------CC-C-------------
Q psy2393 158 -----------------------CP-------------ICN----------------------AK-D------------- 165 (576)
Q Consensus 158 -----------------------~p-------------~c~----------------------~~-~------------- 165 (576)
.| ... .. .
T Consensus 155 ~~~~~~~ikf~~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l 234 (897)
T PRK12300 155 EIVEYTLIKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSEL 234 (897)
T ss_pred CcceEEEEEEeCCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHh
Confidence 01 000 00 0
Q ss_pred ------------------------CCCC----------------------------------ccc---------------
Q psy2393 166 ------------------------QYGD----------------------------------FCE--------------- 172 (576)
Q Consensus 166 ------------------------~~g~----------------------------------~c~--------------- 172 (576)
.+|. .|+
T Consensus 235 ~G~~~~~Pl~~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~ 314 (897)
T PRK12300 235 IGKKVKNPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEK 314 (897)
T ss_pred cCCEEECCCCCCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHH
Confidence 0000 010
Q ss_pred -----------------------cCCCcCCC-C----------------------------cc-CCCcccCCCCccEEee
Q psy2393 173 -----------------------CCSSIYTP-T----------------------------KL-INPYSILSGTKPIIKS 199 (576)
Q Consensus 173 -----------------------~cg~~~~~-~----------------------------~l-~~p~~~~~~~~~~~~~ 199 (576)
..|++... . ++ ..|+|||||++++.+.
T Consensus 315 ~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~ 394 (897)
T PRK12300 315 LGIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKV 394 (897)
T ss_pred hCCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEe
Confidence 01211110 0 00 1388999999999986
Q ss_pred -ecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCC--------CcEEE
Q psy2393 200 -SKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTL--------EKYFY 269 (576)
Q Consensus 200 -~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~--------~~~~~ 269 (576)
++|||++++++++++.+.++ +++. ++|+..++++.+||+ +++|||||||+ +||+|||.++ +.++|
T Consensus 395 ~~~QWFi~~~~~~~k~~~~~~-~~~~~~~P~~~~~~~~~~l~---~l~DW~ISRqr-~WGtpiP~~~~w~~esl~ds~iY 469 (897)
T PRK12300 395 VKDQWFIDYSDPEWKELAHKA-LDNMEIIPEEYRKEFENTID---WLKDRACARRR-GLGTRLPWDEEWIIESLSDSTIY 469 (897)
T ss_pred cCCceEEEcCcHHHHHHHHHH-HccCEEECHHHHHHHHHHHh---hhhhcceeecc-ccCCcCCccCCEEeeeccccchh
Confidence 59999999544899999999 7776 678889999999998 89999999999 9999999642 34566
Q ss_pred EEeecccchhhhcch----h--------hhhCCCCCcc------cc------cccccccccCCCcceEEEeeecCcchhH
Q psy2393 270 VWLDAPIGYLASLKN----F--------FEKGGPKKKY------NE------LRNFDEFISSPNTEQYHFIGKDIFYFHI 325 (576)
Q Consensus 270 vw~d~~~~~~~~~~~----~--------~~~~g~~~~~------~~------~~~~~~~w~~~~~~~i~~~G~D~~~fh~ 325 (576)
+|+++...++...+. + .-..|...+. +. ..+|+.|||.+ ++++|+||++||.
T Consensus 470 ~~~~~i~~~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~P~D----~~~~GkDii~~Hl 545 (897)
T PRK12300 470 MAYYTIAHKIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVD----WRHSGKDLIPNHL 545 (897)
T ss_pred hhHHHHHHHHHHcCCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccCCce----EEEeeeccCccHH
Confidence 776655444442110 0 0000100000 00 13456566654 9999999999999
Q ss_pred hHHHHHHHhcC---CCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHh
Q psy2393 326 LFWPAILKFSG---RKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFI 402 (576)
Q Consensus 326 ~~~~a~l~~~~---~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~ 402 (576)
++|. ++..+. .+.|+.+++||||+++|+|||||+||+|+|.+++++ ||+|++|||+++.++ ...|++|+.+.+.
T Consensus 546 ~~~~-~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~-yGaDalRl~L~~~~~-~~~D~~fs~~~v~ 622 (897)
T PRK12300 546 TFFI-FNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEE-YGADVVRLYLTSSAE-LLQDADWREKEVE 622 (897)
T ss_pred HHHH-HHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHH-cChHHHHHHHHhCCC-CCCCCccCHHHHH
Confidence 9985 444432 256799999999999999999999999999999999 999999999998654 4588999998764
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHh
Q psy2393 403 SCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVI-EQTNFINIF 480 (576)
Q Consensus 403 ~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~-~~~~~~n~y 480 (576)
.. .+++++++|++.++ .....+.... .| +|+++.++.+.+.+.++|++|+++.|++.++ .+.+.+|+|
T Consensus 623 ~~--~~~l~r~~~~~~~~-------~~~~~~~~~~~~D-~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Y 692 (897)
T PRK12300 623 SV--RRQLERFYELAKEL-------IEIGGEEELRFID-KWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWY 692 (897)
T ss_pred HH--HHHHHHHHHHHHHH-------hcCCCccccCHhH-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 44 33455555554332 2111111122 25 9999999999999999999999999998886 556889999
Q ss_pred hhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 481 FDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 481 ~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
++.+++ .+..++.++++.++++|+||+||+||+||+.||.+
T Consensus 693 i~~~k~--------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~ 733 (897)
T PRK12300 693 LRRVGE--------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE 733 (897)
T ss_pred HHhcch--------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 988763 23456778999999999999999999999999854
|
|
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-67 Score=592.31 Aligned_cols=460 Identities=21% Similarity=0.267 Sum_probs=337.3
Q ss_pred CCCCeEEEEcCCCCCCCc-ccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGE-LHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~-lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~ 87 (576)
+++++|+|+++||||||. |||||+++++++|+++||+||+| ++|+|++|||+||+||+.+|.+.|.+|.+++++
T Consensus 107 ~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G-----~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~ 181 (963)
T PLN02563 107 TSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQG-----YNVLHPMGWDAFGLPAEQYAIETGTHPKITTLK 181 (963)
T ss_pred CCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcC-----CeecccccccccCcHHHHHHHHcCCChHHhHHH
Confidence 456789999999999996 99999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccc--cccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCC
Q psy2393 88 ISSNRKKYLDGFYIKF--DNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKD 165 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~--d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~ 165 (576)
+++.++++|++||+++ |++++|++++|.+.++++|.+|+ ++|+||++..+++|||.|+|+|++.
T Consensus 182 ~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~-~~GliY~~~~~v~wcp~~~T~La~~------------- 247 (963)
T PLN02563 182 NIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLL-KRGLAYQAEVPVNWCPALGTVLANE------------- 247 (963)
T ss_pred HHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHH-HCCCEEeeeeeeeecCCcCCCCCHH-------------
Confidence 9999999999999855 58999999999999999999999 9999999999999988888877754
Q ss_pred CCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHH--------
Q psy2393 166 QYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEW-------- 237 (576)
Q Consensus 166 ~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------- 237 (576)
|+++++|++||++++.+...||||++ ++++++++++ ++...||+.+++..++|
T Consensus 248 ----------------Ev~~~~~~~~~~~~~~~~~~q~f~~i--t~ya~~L~~~-l~~~~wp~~v~~~q~nwiG~s~g~~ 308 (963)
T PLN02563 248 ----------------EVVDGLSERGGHPVIRKPMRQWMLKI--TAYADRLLED-LDDLDWPESIKEMQRNWIGRSEGAE 308 (963)
T ss_pred ----------------HhhcCCCcCCCCceEEEecceeEEec--chhHHHHHHh-hhhcCCCHHHHHHHHHhccccceEE
Confidence 55678899999999999999999999 9999988877 32211222221111111
Q ss_pred ---------------------------------------------------------Hh---------------------
Q psy2393 238 ---------------------------------------------------------LE--------------------- 239 (576)
Q Consensus 238 ---------------------------------------------------------l~--------------------- 239 (576)
+.
T Consensus 309 i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~g~~ 388 (963)
T PLN02563 309 LDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKTGVF 388 (963)
T ss_pred EEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhhccceecccc
Confidence 10
Q ss_pred -h------------------------------------------------------c---------------C-------
Q psy2393 240 -K------------------------------------------------------D---------------N------- 242 (576)
Q Consensus 240 -~------------------------------------------------------~---------------~------- 242 (576)
. . .
T Consensus 389 ~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~ 468 (963)
T PLN02563 389 TGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSS 468 (963)
T ss_pred cCcEEeccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccCceeEecCC
Confidence 0 1 0
Q ss_pred ----------------------------------CCCCcccccCCCCCCeecCC----CCCcEEEEEeeccc--------
Q psy2393 243 ----------------------------------KFNDWDISRDAPYFGIKIPN----TLEKYFYVWLDAPI-------- 276 (576)
Q Consensus 243 ----------------------------------~~~dw~isR~~~~WG~~iP~----~~~~~~~vw~d~~~-------- 276 (576)
.++|||||||| +||+|||. .++..+.+=-+.+.
T Consensus 469 ~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQR-yWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~ 547 (963)
T PLN02563 469 SSGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQR-YWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDD 547 (963)
T ss_pred CcccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeec-ccCCceEEEEEcCCCcEEecchHhCcccchhhhh
Confidence 16799999999 99999996 22333322100000
Q ss_pred --------chhhhcchh----hhhCCCCCcccccc----------------------------cccccc-cCCCcceEEE
Q psy2393 277 --------GYLASLKNF----FEKGGPKKKYNELR----------------------------NFDEFI-SSPNTEQYHF 315 (576)
Q Consensus 277 --------~~~~~~~~~----~~~~g~~~~~~~~~----------------------------~~~~~w-~~~~~~~i~~ 315 (576)
..+.....+ +..+|.+ +.++. +...+| |-+ +++
T Consensus 548 ~~~~~~g~~pl~~~~~~~~~~~p~cg~~--~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD----~yi 621 (963)
T PLN02563 548 FTPTGTGEPPLAKAVSWVNTVDPSSGKP--ARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWMPVD----LYV 621 (963)
T ss_pred cccCCCCCCchhcchhhhcCcCcCCCCC--cEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcCCCc----Eee
Confidence 011111111 1122221 11111 111234 433 899
Q ss_pred eeecCcchh---HhHHHHHHHhcC---CCCC-cEEeeeccEEe----------CCc------------------------
Q psy2393 316 IGKDIFYFH---ILFWPAILKFSG---RKLP-NNIFVHGFMTI----------NGK------------------------ 354 (576)
Q Consensus 316 ~G~D~~~fh---~~~~~a~l~~~~---~~~p-~~~~~~g~v~~----------~g~------------------------ 354 (576)
+|.||+-.| +.+|...+..+| .+.| +.+++||||+. +|+
T Consensus 622 gG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (963)
T PLN02563 622 GGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVI 701 (963)
T ss_pred ccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeecCccccceecCCCcCccccccccccccccccccccccc
Confidence 999996555 455655454444 2455 89999999984 455
Q ss_pred ---------------------cccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHH
Q psy2393 355 ---------------------KMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKY 413 (576)
Q Consensus 355 ---------------------KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~ 413 (576)
|||||+||+|+|.+++++ ||+|++|||+++.+|.. +++.++.+.+... ..+++++
T Consensus 702 ~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~k-YGADaLRl~ll~~ap~~-dd~~w~~~~V~g~--~rfL~rl 777 (963)
T PLN02563 702 KSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSE-YGADSLRLYEMFMGPLR-DSKTWSTSGVEGV--HRFLGRT 777 (963)
T ss_pred ccccccccccCCcccccccccccccccCCcCCHHHHHHH-cCcHHHHHHHHhCCCcc-cccccCHHHHHHH--HHHHHHH
Confidence 999999999999999999 99999999999876544 6677887665443 3345666
Q ss_pred HHHHHHHHHHHHHHcC-CCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCccccccC
Q psy2393 414 INIASRSSSFIEKYFK-GYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKN 492 (576)
Q Consensus 414 ~n~~~R~~~~~~~~~~-~~~~~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~~~~~~ 492 (576)
+|++...... ...+. +..+.....| .|++++++.+.+.+.++|++|+|+.|++.|++|++..+. |.
T Consensus 778 wn~~~~~~~~-~~~~~~~~~~~~~~~d-~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~-------~~---- 844 (963)
T PLN02563 778 WRLVVGAPLP-DGSFRDGTVVTDEEPS-LEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYK-------WD---- 844 (963)
T ss_pred HHHHHHhhhc-ccccCccccccCCcch-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhC-------ch----
Confidence 6664321000 00011 1111111225 899999999999999999999999999999999865432 11
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc----ccccc
Q psy2393 493 NIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP----LQWIN 541 (576)
Q Consensus 493 ~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~----~~~~~ 541 (576)
. ...+++..+++||+||+||+|||||+.||... ..|+.
T Consensus 845 --~---------~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~~~sv~~~~WP~ 886 (963)
T PLN02563 845 --K---------VPREAIEPFVLLLSPYAPHLAEELWFRLGHSNSLAYEPWPE 886 (963)
T ss_pred --H---------HHHHHHHHHHHHHHhhhhhHHHHHHHHcCCCCeeeeCCCCC
Confidence 0 11357888999999999999999999998643 46654
|
|
| >KOG0433|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-66 Score=534.48 Aligned_cols=500 Identities=20% Similarity=0.263 Sum_probs=380.0
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHH-HHHHH------cCCC
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM-IAAEK------AGMT 80 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~-~~a~~------~g~~ 80 (576)
...+..|++.+ +||.|||||+++.|++|++.|++-++| .+|.|++||||||+||+ .+|.+ ...+
T Consensus 55 ~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg-----~~alyvpGwDchGLPiEs~kalssl~~~~~~~s 125 (937)
T KOG0433|consen 55 DQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQG-----KSALYVPGWDCHGLPIESTKALSSLTESEGSRT 125 (937)
T ss_pred hccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcC-----ceeccCCCCCcCCCchHHHHHhhhhhhccccCC
Confidence 34556788887 999999999999999999999999999 99999999999999999 56654 2345
Q ss_pred HHH-------HHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccc
Q psy2393 81 PKE-------FINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPD 151 (576)
Q Consensus 81 ~~~-------~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~ 151 (576)
|.| +++..++.+++.|+++|| +|.+.|-|.+++|.....++|.+|+ ++|+||+...||+|+|+++|+|+|
T Consensus 126 ~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~ly-ekgLvyR~~KPVyWSpSSRTALAE 204 (937)
T KOG0433|consen 126 PLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLY-EKGLVYRSFKPVYWSPSSRTALAE 204 (937)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHH-hccceeccCCcceecCcchhhhhh
Confidence 544 677888999999999999 8889999999999999999999999 999999999999999999999999
Q ss_pred cceecc--------------------------------------CC--------CCCCCC-CC-----------------
Q psy2393 152 RYIKGE--------------------------------------CP--------ICNAKD-QY----------------- 167 (576)
Q Consensus 152 ~~v~~~--------------------------------------~p--------~c~~~~-~~----------------- 167 (576)
+|+||- .| .|-..+ .|
T Consensus 205 aELEYn~nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylva 284 (937)
T KOG0433|consen 205 SELEYNDNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVA 284 (937)
T ss_pred hhccCCcCCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEc
Confidence 999861 11 111000 00
Q ss_pred -----------CC------------------------------------------------------------------c
Q psy2393 168 -----------GD------------------------------------------------------------------F 170 (576)
Q Consensus 168 -----------g~------------------------------------------------------------------~ 170 (576)
+- .
T Consensus 285 s~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~ 364 (937)
T KOG0433|consen 285 SKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVE 364 (937)
T ss_pred cchhhhhhhhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcc
Confidence 00 1
Q ss_pred cc--cCCCcCC-------CCc------------------------cCCCcccCCCCccEEeeecceeEecCchhhHHHHH
Q psy2393 171 CE--CCSSIYT-------PTK------------------------LINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLR 217 (576)
Q Consensus 171 c~--~cg~~~~-------~~~------------------------l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~ 217 (576)
|. .-|++.. ..+ -.+|++|||++|++.|.++|||+++ +.++..+.
T Consensus 365 s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~--e~~k~~A~ 442 (937)
T KOG0433|consen 365 SFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDV--EEIKKRAS 442 (937)
T ss_pred cccCCCCceecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheeeH--HhhhhHHH
Confidence 11 1122110 000 0259999999999999999999999 99999999
Q ss_pred HhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCC----C------------------CcEEEEEeec
Q psy2393 218 KWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNT----L------------------EKYFYVWLDA 274 (576)
Q Consensus 218 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~----~------------------~~~~~vw~d~ 274 (576)
+. ++++ +.|+....++..++. ++++||||||| .||+|||.. . .+..++|+..
T Consensus 443 ~a-l~~Vk~~P~~~~~rl~~~~~---~R~~WCISRQR-~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~ 517 (937)
T KOG0433|consen 443 MA-LDDVKVAPGDSDLRLKQLVT---TRPSWCISRQR-VWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEI 517 (937)
T ss_pred HH-HhhceeCCcchHHHHHHHHc---CCCcceeeecc-ccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeC
Confidence 99 8777 678888999999997 99999999999 999999962 1 1223566654
Q ss_pred ccchhhhcchhhhhCCC-CCcccccccccccccCCCcc-------------eEEEeeecCcchhHhHHHHHHH--hcCCC
Q psy2393 275 PIGYLASLKNFFEKGGP-KKKYNELRNFDEFISSPNTE-------------QYHFIGKDIFYFHILFWPAILK--FSGRK 338 (576)
Q Consensus 275 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~w~~~~~~-------------~i~~~G~D~~~fh~~~~~a~l~--~~~~~ 338 (576)
...-+--- .+..+.++ .+.|.+..+.-+.|.|+++. .++..|.||. .+++..++|. |...+
T Consensus 518 ~~eellpe-~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~~~~~~aDv~LEG~DQ~--rGWFQSsLLTsvA~q~k 594 (937)
T KOG0433|consen 518 DVEELLPE-EEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLDNEREHVADVYLEGVDQF--RGWFQSSLLTSVAVQNK 594 (937)
T ss_pred ChhHhCcH-hhhcccchhHHHhccCCceeeeEecCCCcceeecCCCCCcceeeEEecchhc--chHHHHHHHHHHHHhcc
Confidence 33211100 00101010 01233335555566554321 3788899996 2334433333 33445
Q ss_pred CC-cEEeeeccEEe-CCccccccCCCccChhHHhhc-----CCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHH
Q psy2393 339 LP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKI-----GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIG 411 (576)
Q Consensus 339 ~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~-----g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~ 411 (576)
.| +.+++|||+.+ +|.|||||+||||+|+.+++. .||+|.||||++.. +...++......+.+. ++-+.
T Consensus 595 APYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~--~~t~d~~iGp~il~qv--~e~l~ 670 (937)
T KOG0433|consen 595 APYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGS--ENTGESKIGPKILDQV--DEKLI 670 (937)
T ss_pred CCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeeecc--cccCceecCHHHHHHH--HHHHH
Confidence 66 89999999999 999999999999999999973 39999999999965 6667888888866554 55688
Q ss_pred HHHHHHHHHHHHHHHHcCC--CCCC-ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhhhhcC
Q psy2393 412 KYINIASRSSSFIEKYFKG--YLNM-KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINIFFDQNK 485 (576)
Q Consensus 412 ~~~n~~~R~~~~~~~~~~~--~~~~-~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y~~~~k 485 (576)
+++|+++.+.+-+.+...+ .+|. .+. .| +.++.+|..+.+.+++.|++|+|+++++.|..|. .+++.|++..|
T Consensus 671 K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iD-q~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivK 749 (937)
T KOG0433|consen 671 KFRNTFRFLLGNLQDFDGKQVKFPLKDLRYID-QYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVK 749 (937)
T ss_pred HHHhHHHHHhhcccccCCccccccchhhhhhh-HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 9999987776666543222 2232 121 26 8999999999999999999999999999999998 88999999999
Q ss_pred ccccccCc--ccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 486 PWKLAKNN--IYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 486 ~~~~~~~~--~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
++.|++.. .+++.+++ +|..++..++..++||+||++||+||.|...
T Consensus 750 DRLY~~~~~s~~rrs~Qt---tL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~ 798 (937)
T KOG0433|consen 750 DRLYCDKVGSESRRSAQT---TLHHLLHNLAHIISPILPHLAEEVWQHLPGS 798 (937)
T ss_pred hhhhcCCCCcHHHHHHHH---HHHHHHHHHHHHHccccHHHHHHHHHhCCCC
Confidence 99998743 33444554 5557888899999999999999999999854
|
|
| >KOG0432|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-65 Score=534.84 Aligned_cols=485 Identities=20% Similarity=0.282 Sum_probs=377.7
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-----CCC---
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-----GMT--- 80 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-----g~~--- 80 (576)
..+..|.++.|||+++|.||||||.+..+.|+++||.||.| +.|.|++|+|+.|..++..+++. |.+
T Consensus 72 ~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G-----~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~ 146 (995)
T KOG0432|consen 72 NPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHG-----YQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHD 146 (995)
T ss_pred CCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcC-----CeeeecCCccccchhHHHHHHHHHHHhcCcchhh
Confidence 35678999999999999999999999999999999999999 99999999999999988877762 232
Q ss_pred --HH-------HHHHHHHHHHHHHHhhcCcc--ccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 81 --PK-------EFINNISSNRKKYLDGFYIK--FDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 81 --~~-------~~~~~~~~~~~~~l~~lgi~--~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
.. +|-+++...|.++|++||.+ |++.+.|+|+...+.|.+.|.+|+ +.|+||+...-++||+..++.+
T Consensus 147 lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~-eeglIyR~~rlVNW~~~L~sai 225 (995)
T KOG0432|consen 147 LGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLH-EEGLIYRANRLVNWCPALRSAI 225 (995)
T ss_pred cCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHH-hcCceEecCceeeechhHHhhh
Confidence 22 35677888999999999984 568888999999999999999999 9999999999999999999999
Q ss_pred cccceecc---------CCC------------------------------------------------------------
Q psy2393 150 PDRYIKGE---------CPI------------------------------------------------------------ 160 (576)
Q Consensus 150 ~~~~v~~~---------~p~------------------------------------------------------------ 160 (576)
+|.||+.. .|.
T Consensus 226 SdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP 305 (995)
T KOG0432|consen 226 SDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHP 305 (995)
T ss_pred hhheecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecC
Confidence 99998741 010
Q ss_pred -CCCC----------CC---------------------------------CCCccccCCCcC-----C------------
Q psy2393 161 -CNAK----------DQ---------------------------------YGDFCECCSSIY-----T------------ 179 (576)
Q Consensus 161 -c~~~----------~~---------------------------------~g~~c~~cg~~~-----~------------ 179 (576)
++.. .. .|..-..||.+- +
T Consensus 306 ~~~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~ 385 (995)
T KOG0432|consen 306 FTGRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKEL 385 (995)
T ss_pred CCCCccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHh
Confidence 0000 00 011122344220 0
Q ss_pred -------CCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC---CCChhHHHHHHHHHhhcCCCCCccc
Q psy2393 180 -------PTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK---RLQPEIVNKIKEWLEKDNKFNDWDI 249 (576)
Q Consensus 180 -------~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~dw~i 249 (576)
.-.++-|.|.|+|..+++....|||++. ........+. ++++ .+|+...+....|++ +.+||||
T Consensus 386 gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c--~ema~~A~~a-v~sG~L~i~P~~~~k~w~~W~~---~i~DWCi 459 (995)
T KOG0432|consen 386 GLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSC--KEMAKKALKA-VESGKLEILPEFHEKEWYRWLE---NIRDWCI 459 (995)
T ss_pred hhhhccCCCceeccccCCCCCcccccccchheeeh--HHHHHHHHHH-HhcCCeEECchHHHHHHHHHHh---hccccch
Confidence 0113349999999999999999999999 8898888888 6654 467778899999998 9999999
Q ss_pred ccCCCCCCeecCCC----------C-------------------------------CcEEEEEeecccchhhhcchhhhh
Q psy2393 250 SRDAPYFGIKIPNT----------L-------------------------------EKYFYVWLDAPIGYLASLKNFFEK 288 (576)
Q Consensus 250 sR~~~~WG~~iP~~----------~-------------------------------~~~~~vw~d~~~~~~~~~~~~~~~ 288 (576)
|||- +||+.||.. + ..|+++||.+.+..++..| |.++
T Consensus 460 SRQL-WWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lG-WP~~ 537 (995)
T KOG0432|consen 460 SRQL-WWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLG-WPEE 537 (995)
T ss_pred hhhh-hhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcC-Cccc
Confidence 9998 999999961 0 2345566666666665543 2222
Q ss_pred CCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhc----CCCCC-cEEeeeccEEe-CCccccccCCC
Q psy2393 289 GGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFS----GRKLP-NNIFVHGFMTI-NGKKMSKSNKI 362 (576)
Q Consensus 289 ~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~----~~~~p-~~~~~~g~v~~-~g~KMSKS~gn 362 (576)
. +++..|+|-+ +.-.|.|++|| |+|-+..+ ..+.| +.++.||+|.+ .|+|||||+||
T Consensus 538 t---------~d~~~fyP~s----llETG~DILfF----WVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGN 600 (995)
T KOG0432|consen 538 T---------KDFKNFYPLS----LLETGHDILFF----WVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGN 600 (995)
T ss_pred c---------ccHHhcCCch----hhhcCchHHHH----HHHHHHHhhhhhcCCCCchheeechhhccccccccchhhcc
Confidence 1 3455555433 44569999988 55522222 23455 89999999999 99999999999
Q ss_pred ccChhHHhh------------------------------c---C---CChhHHHHHHHhhCCCCCCCcccchhhHhhhhh
Q psy2393 363 GISPLYYLK------------------------------I---G---MNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406 (576)
Q Consensus 363 ~i~~~dll~------------------------------~---g---~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~ 406 (576)
||+|.|+|+ . | .|.|||||.||+.... .+|+++|..++...
T Consensus 601 VIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~-~~dInLDv~rv~g~-- 677 (995)
T KOG0432|consen 601 VIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQ-GRDINLDVLRVEGY-- 677 (995)
T ss_pred ccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHcccc-CccccccHHHHhhH--
Confidence 999999997 1 1 5999999999997544 47899998877554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCC--------cccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HH
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGYLNM--------KWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NF 476 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~~~~--------~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~ 476 (576)
+.|+|++||+.+.+...+.+++ +|. ....| .|+++.|..+.+.+.+.++.++|+.|+..+..|. ++
T Consensus 678 r~FcNKlWNa~rF~l~~lg~~~---~p~~~~~~~~~~~~~d-~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~l 753 (995)
T KOG0432|consen 678 RHFCNKLWNATRFALQRLGENF---VPSPTEDLSGNESLVD-EWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDL 753 (995)
T ss_pred HHHHHHHHHHHHHHHHhcccCC---CCCcccccCCCcchhH-HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 7799999999876655443322 222 11136 9999999999999999999999999999999998 99
Q ss_pred HHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 477 INIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 477 ~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
|..|++..||...... ......+..+|..+|....+||+|||||++|++||+|.-
T Consensus 754 CDVYlE~~Kp~l~~~~---~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~ 808 (995)
T KOG0432|consen 754 CDVYLEATKPLLWGDS---EALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPR 808 (995)
T ss_pred HHHHHHHhhHHhcCCc---HHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhccc
Confidence 9999999998654332 223333446666888899999999999999999999853
|
|
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-64 Score=575.98 Aligned_cols=477 Identities=16% Similarity=0.200 Sum_probs=342.9
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-------CCC--
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-------GMT-- 80 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-------g~~-- 80 (576)
++++|+++.||||+||.|||||+++++++|+++||+||+| ++|+|++||||||+||+..|++. |..
T Consensus 43 ~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G-----~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~ 117 (1084)
T PLN02959 43 PGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRG-----ANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPV 117 (1084)
T ss_pred CCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCC-----CccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcc
Confidence 3478999999999999999999999999999999999999 99999999999999999998652 321
Q ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHH
Q psy2393 81 -----------------------------------------------------------------PKEFINNISSNRKKY 95 (576)
Q Consensus 81 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 95 (576)
|..+++++...++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~ 197 (1084)
T PLN02959 118 FPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKED 197 (1084)
T ss_pred cccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHH
Confidence 222445555778999
Q ss_pred HhhcCc--cccccccCCC--hhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceec---------------
Q psy2393 96 LDGFYI--KFDNWYSTDS--IENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKG--------------- 156 (576)
Q Consensus 96 l~~lgi--~~d~~~~t~~--~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~--------------- 156 (576)
|++||+ +|++.+.|++ +.|...+++.|.+|+ ++|+||++..+++|||.|++.++|+++++
T Consensus 198 ~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~-ekG~I~~g~rpv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~ 276 (1084)
T PLN02959 198 LKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLK-KKGKIVKDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKME 276 (1084)
T ss_pred HHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHH-HCCCEEecCeeeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEe
Confidence 999998 6678888988 999999999999999 99999999999999999999999985431
Q ss_pred -----------------------cCC---------------------C-----------------CCC------------
Q psy2393 157 -----------------------ECP---------------------I-----------------CNA------------ 163 (576)
Q Consensus 157 -----------------------~~p---------------------~-----------------c~~------------ 163 (576)
+.| . +..
T Consensus 277 v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~ 356 (1084)
T PLN02959 277 VLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKPTCLV 356 (1084)
T ss_pred ecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCCcEEEE
Confidence 001 0 000
Q ss_pred -------------------CC-----------C--------------------------------CCC----------cc
Q psy2393 164 -------------------KD-----------Q--------------------------------YGD----------FC 171 (576)
Q Consensus 164 -------------------~~-----------~--------------------------------~g~----------~c 171 (576)
+. . ||. .+
T Consensus 357 ~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~ 436 (1084)
T PLN02959 357 ELTGYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVP 436 (1084)
T ss_pred EEEHHHhCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcC
Confidence 00 0 000 00
Q ss_pred --ccCCC----------------------------------cCCC----Cc----------------------c------
Q psy2393 172 --ECCSS----------------------------------IYTP----TK----------------------L------ 183 (576)
Q Consensus 172 --~~cg~----------------------------------~~~~----~~----------------------l------ 183 (576)
+.+|. +++. .+ +
T Consensus 437 iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep 516 (1084)
T PLN02959 437 IINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEP 516 (1084)
T ss_pred ccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEc
Confidence 01110 1100 00 0
Q ss_pred CCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC
Q psy2393 184 INPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN 262 (576)
Q Consensus 184 ~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~ 262 (576)
..|+|+|||++++++.++|||+++++..+++.+.+. +++. ++|+..++.+.+||+ +++|||||||+ +||+|||.
T Consensus 517 ~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~-l~~v~~~P~~~~~~~~~wl~---~l~DWciSRQr-~wGtpIPW 591 (1084)
T PLN02959 517 EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKC-LSKMNLYSDETRHGFEHTLG---WLNQWACSRSF-GLGTRIPW 591 (1084)
T ss_pred CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHH-HcccEEECHHHHHHHHHHHh---CCCceeecccc-cCCCcCCc
Confidence 137999999999999999999999545899999999 7776 568889999999998 99999999999 99999994
Q ss_pred CCC------------------------------------------cEEEEEeecccchhhhcchhhhhCCCCCcccc-cc
Q psy2393 263 TLE------------------------------------------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNE-LR 299 (576)
Q Consensus 263 ~~~------------------------------------------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~-~~ 299 (576)
++. .++++||++.....+. + +.... ... ..
T Consensus 592 d~~~~ieslsdstiy~a~yti~~~~~~~~~~g~~~~~i~~~~~~~dV~D~wF~Sg~~p~~t-~-~p~~~-----l~~~r~ 664 (1084)
T PLN02959 592 DEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSS-D-IPAEL-----LEKMKQ 664 (1084)
T ss_pred ccceeeccCCCCceeechhhHHHHHhhhhccCCccccCChhhcCccceeEeecCCCccccc-C-CCHHH-----HhhhhH
Confidence 221 1334444432211110 0 00000 000 02
Q ss_pred cccccccCCCcceEEEeeecCcchhHhHHHHHHHhc--CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChh
Q psy2393 300 NFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFS--GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPE 377 (576)
Q Consensus 300 ~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~--~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d 377 (576)
+|+.|+|.+ +++.|+||+++|..+......++ ..+.|+.+++||||+.+|+|||||+||+|+|.+++++ ||+|
T Consensus 665 ef~~~yP~D----l~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~k-yGAD 739 (1084)
T PLN02959 665 EFEYWYPFD----LRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEE-FSAD 739 (1084)
T ss_pred HHHhhCCCe----EEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHH-hCch
Confidence 344444543 89999999999875533222222 2456689999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCC-C-Cccc-CChHHHHHHHHHHHHHH
Q psy2393 378 WLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYL-N-MKWV-KDNDTFLSKLRVVSSSI 454 (576)
Q Consensus 378 ~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~-~-~~~~-~d~~~l~~~l~~~~~~v 454 (576)
++|||+++.+ +..+|.+|+.+.... ...++.|.+..+.+.+.. .... + ..+. .| +|++++++.+.+.+
T Consensus 740 alRl~la~~~-~~~~D~nF~~k~~n~-----~~~~l~n~~~~~~~~~~~--~~~~~~~~~~~~~D-~wils~l~~~i~~v 810 (1084)
T PLN02959 740 ATRFALADAG-DGVDDANFVFETANA-----AILRLTKEIAWMEEVLAA--ESSLRTGPPSTYAD-RVFENEINIAIAET 810 (1084)
T ss_pred HHHHHHhhcC-CccCCCCccHHHHHH-----HHHHHHHHHHHHHHhhhh--hcccCCcccCCHHH-HHHHHHHHHHHHHH
Confidence 9999999864 455788999875432 234444544322222211 0011 1 1122 26 99999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHh-hhhcCc--cccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Q psy2393 455 QKYYENRNFNKVLYIVIEQTNFINIF-FDQNKP--WKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETF 531 (576)
Q Consensus 455 ~~a~~~~~~~~~~~~l~~~~~~~n~y-~~~~k~--~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~ 531 (576)
.++|++|+|+.|++..+ | ++..++ +.+.... ... ..++..+|..+++||+|||||+||+||+.
T Consensus 811 ~~a~e~y~f~~A~~~~~--------Yel~~~k~~yr~~~~~~---~~~---~~~L~~vl~~~l~LLaP~~PfiaEEiW~~ 876 (1084)
T PLN02959 811 EKNYEAMMFREALKSGF--------YDLQAARDEYRLSCGSG---GMN---RDLVWRFMDVQTRLITPICPHYAEHVWRE 876 (1084)
T ss_pred HHHHHcccHHHHHHHHH--------HHHHHhHHHHhhccccc---hHH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 99999999999999642 2 222222 1121111 112 24566789999999999999999999999
Q ss_pred c
Q psy2393 532 L 532 (576)
Q Consensus 532 L 532 (576)
|
T Consensus 877 l 877 (1084)
T PLN02959 877 I 877 (1084)
T ss_pred c
Confidence 9
|
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-63 Score=537.74 Aligned_cols=460 Identities=20% Similarity=0.290 Sum_probs=349.0
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
+||||+.+.|||||.||+||.|+|+++||++||+||+| |+|+|.+|||..|+|++..|.+.|.+|..+++++++.
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~G-----yNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~ 108 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQG-----YNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAY 108 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcC-----CeecccCcccccCchHHHHHHHhCCChHHHHHHHHHH
Confidence 69999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcc--ccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCC
Q psy2393 92 RKKYLDGFYIK--FDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGD 169 (576)
Q Consensus 92 ~~~~l~~lgi~--~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~ 169 (576)
++++|+.||.+ |++-+.|+||+|..++|++|.+|+ ++|++|+++.++.|||.|+|.|++.
T Consensus 109 ~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~-ekGL~y~~~~~VnwcP~d~tvlane----------------- 170 (814)
T COG0495 109 MKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLY-EKGLAYRKEAPVNWCPVDGTVLANE----------------- 170 (814)
T ss_pred HHHHHHHhCCccccccceecCCccHHHHHHHHHHHHH-HCCCEEeccccceeCCCcCCccccc-----------------
Confidence 99999999985 558888999999999999999999 9999999999999988888877754
Q ss_pred ccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC-C-CCChhHHHHHHHHHhh-------
Q psy2393 170 FCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD-K-RLQPEIVNKIKEWLEK------- 240 (576)
Q Consensus 170 ~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~l~~------- 240 (576)
++++..|||||.+|+.+...||||++ +++.+.|++- +.. . .||+.++....+|+.+
T Consensus 171 ------------qv~~g~~~r~~~~V~~kel~qw~~ki--t~yae~ll~~-l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~ 235 (814)
T COG0495 171 ------------QVIDGGCWRCGEPVEIKELTQWFFKI--TDYADELLDD-LDKLATLWPETVKGMQRNWIGPSEGYEVA 235 (814)
T ss_pred ------------eeecCCcccCCCceeEeeeEEEEEEe--chhHHHHHhh-hhhhccCCchhHHHHHHcCcCCCCCeEEE
Confidence 55677889999999999999999999 9999998887 444 3 4898899999999874
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 241 -------------------------------------------------------------------------------- 240 (576)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (576)
T Consensus 236 f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a 315 (814)
T COG0495 236 FVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYA 315 (814)
T ss_pred EecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceeccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 241 -------------------------------------------------------------------------------- 240 (576)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (576)
T Consensus 316 ~~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~linS~~~~gl~~e 395 (814)
T COG0495 316 INPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYE 395 (814)
T ss_pred cCCCCCCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEeccccccCcchh
Confidence
Q ss_pred --------------------cCCCCCcccccCCCCCCeecCCCC---C-------cEEEEEeeccc------chhhhcch
Q psy2393 241 --------------------DNKFNDWDISRDAPYFGIKIPNTL---E-------KYFYVWLDAPI------GYLASLKN 284 (576)
Q Consensus 241 --------------------~~~~~dw~isR~~~~WG~~iP~~~---~-------~~~~vw~d~~~------~~~~~~~~ 284 (576)
+.+++||.+|||+ +||.|+|.-. . .-+.+|.-+.. +.|.....
T Consensus 396 ~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqR-ywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~ 474 (814)
T COG0495 396 EAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQR-YWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEE 474 (814)
T ss_pred HHHHHHHHhHHHhcCCceEEecccchHHHHHHH-HhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcc
Confidence 2346799999999 9999999521 0 01111211100 01111000
Q ss_pred hhhh-CCCC---------------Ccc-------------ccc-ccccccc-cCCCcceEEEeeecCcchhHhHH---HH
Q psy2393 285 FFEK-GGPK---------------KKY-------------NEL-RNFDEFI-SSPNTEQYHFIGKDIFYFHILFW---PA 330 (576)
Q Consensus 285 ~~~~-~g~~---------------~~~-------------~~~-~~~~~~w-~~~~~~~i~~~G~D~~~fh~~~~---~a 330 (576)
|... +... +.| +.+ +.++ +| |=+ ++++|+||+-.|..+. -.
T Consensus 475 W~~~s~~~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~-yW~PVD----~yigG~ehavlHLly~rF~Hk 549 (814)
T COG0495 475 WVIESLPDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFN-YWYPVD----LYIGGIEHAVLHLLYFRFFHK 549 (814)
T ss_pred eEEEecCCCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHh-cccChh----eeecchhHHHHHHHHHHHHHH
Confidence 0000 0000 000 011 2223 45 432 8999999998886543 33
Q ss_pred HHHhcCC---CCC-cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhh
Q psy2393 331 ILKFSGR---KLP-NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCV 405 (576)
Q Consensus 331 ~l~~~~~---~~p-~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~ 405 (576)
.+...|+ ..| +.++++|||+. +|+|||||+||+|+|++++++ ||+|++|+|++..+|.. +|++++.+.+...
T Consensus 550 al~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~-yGADt~Rl~~m~~ap~~-~d~~W~e~gv~g~- 626 (814)
T COG0495 550 ALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEK-YGADTVRLYIMFAAPPE-QDLEWSESGVEGA- 626 (814)
T ss_pred HhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHH-hCchHHHHHHHhhCChh-hCCCCChhhhHHH-
Confidence 3444443 233 67999999999 899999999999999999999 99999999999987755 7788887765443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCh-HHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 406 NSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDN-DTFLSKLRVVSSSIQKYYEN-RNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 406 ~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~~~~~v~~a~~~-~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
..+++++++++...... . ......++ ..+...++++.+.|.+.++. +.++.++..+++|++...+|...
T Consensus 627 -~rfL~r~~~l~~~~~~~-------~-~~~~~~~~~~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~ 697 (814)
T COG0495 627 -RRFLQRVWNLVKEHLEK-------L-VEELTKEQGKEDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRR 697 (814)
T ss_pred -HHHHHHHHHHHHHhhhc-------c-cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22344444444332211 1 11111121 34556667777888888877 88999999999999998888765
Q ss_pred cCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC----ccccccc
Q psy2393 484 NKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS----PLQWINI 542 (576)
Q Consensus 484 ~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~----~~~~~~~ 542 (576)
... . . .++.+++..+.+||+||+||+|||+|+.||.. ...|+..
T Consensus 698 ~~~--------~----~---~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~~~v~~~~wP~~ 745 (814)
T COG0495 698 TEG--------D----R---KVLREALETWVRLLAPFAPHIAEELWEELGNEGFVSNAPWPEP 745 (814)
T ss_pred ccc--------h----H---HHHHHHHHHHHHHhcccccHHHHHHHHHhcCCCceeeCCCCCC
Confidence 431 0 1 33446888899999999999999999999953 2457544
|
|
| >cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-63 Score=505.08 Aligned_cols=303 Identities=26% Similarity=0.378 Sum_probs=268.6
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-CCCH---------
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-GMTP--------- 81 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-g~~~--------- 81 (576)
++|+|.+|||||||++||||+++++++|+++||++++| ++|.+++|+||||+||+.+|++. |.++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G-----~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~ 75 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQG-----YYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGI 75 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcC-----CccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCH
Confidence 46999999999999999999999999999999999999 99999999999999999999986 7654
Q ss_pred -------HHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccccc
Q psy2393 82 -------KEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDR 152 (576)
Q Consensus 82 -------~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~ 152 (576)
+++++++.+.|.++|++||| ++|.+++|++++|.+.++++|.+|+ ++|+||+++.+++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~-~~G~iY~~~~~v~~----------- 143 (338)
T cd00818 76 AEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLH-EKGLLYRGYKVVPW----------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHH-HCCCEeccCCeeee-----------
Confidence 68999999999999999999 7788999999999999999999999 99999999999988
Q ss_pred ceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCC-CChhHH
Q psy2393 153 YIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKR-LQPEIV 231 (576)
Q Consensus 153 ~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~-~~~~~~ 231 (576)
+++.+.++||||++ +++++.+.++ +++.. +|+..+
T Consensus 144 -----------------------------------------~v~~~~~~qwf~~l--~~~~~~l~~~-~~~~~~~P~~~~ 179 (338)
T cd00818 144 -----------------------------------------PLIYRATPQWFIRV--TKIKDRLLEA-NDKVNWIPEWVK 179 (338)
T ss_pred -----------------------------------------EEEEEecCeEEEEc--HHHHHHHHHH-HhcCcEECHHHH
Confidence 57899999999999 9999999999 76664 588899
Q ss_pred HHHHHHHhhcCCCCCcccccCCCCCCeecCC----CC--------CcEEEEEeecccchhhhcchhhhhCCCCCcccccc
Q psy2393 232 NKIKEWLEKDNKFNDWDISRDAPYFGIKIPN----TL--------EKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELR 299 (576)
Q Consensus 232 ~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~----~~--------~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~ 299 (576)
+.+.+|++ +++||||||++ .||+|+|. ++ ++++|||||+..++++..+. ... ..
T Consensus 180 ~~~~~~l~---~l~dw~iSR~~-~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~-~~~---------~~ 245 (338)
T cd00818 180 NRFGNWLE---NRRDWCISRQR-YWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHY-PFE---------NE 245 (338)
T ss_pred HHHHHHHh---cchhcceeeec-ccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCC-CCc---------ch
Confidence 99999998 79999999999 99999996 33 77999999998888775431 111 13
Q ss_pred cccccccCCCcceEEEeeecCcc--hhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCCh
Q psy2393 300 NFDEFISSPNTEQYHFIGKDIFY--FHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNP 376 (576)
Q Consensus 300 ~~~~~w~~~~~~~i~~~G~D~~~--fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~ 376 (576)
+|+.+||.+ ++++|+||++ ||..+|++++ ..+..+|+.+++||+++. +|+|||||+||+|+++|+++. ||+
T Consensus 246 ~~~~~~p~d----~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~-~~~ 319 (338)
T cd00818 246 DFEELFPAD----FILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDK-YGA 319 (338)
T ss_pred hhhccCCCe----EEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHH-cCc
Confidence 577788754 8999999985 8999999865 455566699999999987 899999999999999999999 999
Q ss_pred hHHHHHHHhhCCCCCCCccc
Q psy2393 377 EWLRYYIASKLNNKIEDIDF 396 (576)
Q Consensus 377 d~lR~~l~~~~~~~~~d~~f 396 (576)
|++|||+++..+.+ +|+.|
T Consensus 320 D~~R~~l~~~~~~~-~d~~~ 338 (338)
T cd00818 320 DALRLWVASSDVYA-EDLRF 338 (338)
T ss_pred HHHHHHHHhCCCcc-CCCCC
Confidence 99999999986554 55543
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-62 Score=532.66 Aligned_cols=362 Identities=25% Similarity=0.322 Sum_probs=266.2
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-CC-------
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-GM------- 79 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-g~------- 79 (576)
.+++++|+|++||||+||.|||||+++++++|+++||+||+| ++|.+++|||+||+||+.++++. |.
T Consensus 19 ~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G-----~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~ 93 (601)
T PF00133_consen 19 NKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQG-----YNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRK 93 (601)
T ss_dssp TTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTT-----SEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCS
T ss_pred CCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC-----cEeCCCCCcCCCCcchhhhHHHhhccccccccc
Confidence 456789999999999999999999999999999999999999 99999999999999999999873 33
Q ss_pred ---------CHHHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcc
Q psy2393 80 ---------TPKEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIF 148 (576)
Q Consensus 80 ---------~~~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~ 148 (576)
.+.++++++.+.++++|++||+ +|++.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~-~kglIyr~~~pv~w~p~~~t~ 172 (601)
T PF00133_consen 94 DLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLY-EKGLIYRGKKPVNWCPSCQTA 172 (601)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHH-HTTSEEEEEEEEEEETTTTEE
T ss_pred ccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHH-hcCcEEeeCCCCCcCcccccc
Confidence 2567889999999999999998 5668999999999999999999999 999999999999999999999
Q ss_pred ccccceecc--------------------------CC----C----CCCCC-----------------------------
Q psy2393 149 LPDRYIKGE--------------------------CP----I----CNAKD----------------------------- 165 (576)
Q Consensus 149 l~~~~v~~~--------------------------~p----~----c~~~~----------------------------- 165 (576)
|+++||++. .| . |..++
T Consensus 173 lsd~Ev~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~~~~~~~~~~~~~ 252 (601)
T PF00133_consen 173 LSDHEVEYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLVEKLSKQEKTKLE 252 (601)
T ss_dssp E-GGGEEEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHHHHHHTTTSSSEE
T ss_pred hhhhhcccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHHHHHHhhhhhccc
Confidence 999999741 11 0 11111
Q ss_pred -------------------------------CCCCccc--------------------------cCCCcCCCC-------
Q psy2393 166 -------------------------------QYGDFCE--------------------------CCSSIYTPT------- 181 (576)
Q Consensus 166 -------------------------------~~g~~c~--------------------------~cg~~~~~~------- 181 (576)
..|..|. .-|++....
T Consensus 253 ~~~g~~L~g~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~ 332 (601)
T PF00133_consen 253 DFRGKELVGLKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMK 332 (601)
T ss_dssp EEECHHHTTSEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSB
T ss_pred ccCcceecCcEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCce
Confidence 0011110 111111100
Q ss_pred ------------------------ccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHH
Q psy2393 182 ------------------------KLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKE 236 (576)
Q Consensus 182 ------------------------~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 236 (576)
+...|+|||||++++.+.++|||+++ +.+++.+.+. +++. ++|+..++++.+
T Consensus 333 v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~--~~~k~~~l~~-~~~i~~~P~~~~~~~~~ 409 (601)
T PF00133_consen 333 VFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKY--DDWKKKALEA-LEKIKFYPESYRKRFEN 409 (601)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEH--HHHHHHHHHH-HHTSEESSSTCHHHHHH
T ss_pred eeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEec--HHhHHHHHhh-cccceEEcccchhhhhh
Confidence 00138999999999999999999999 8999999999 7776 678889999999
Q ss_pred HHhhcCCCCCcccccCCCCCCeecCCC---C---------------------------------------------CcEE
Q psy2393 237 WLEKDNKFNDWDISRDAPYFGIKIPNT---L---------------------------------------------EKYF 268 (576)
Q Consensus 237 ~l~~~~~~~dw~isR~~~~WG~~iP~~---~---------------------------------------------~~~~ 268 (576)
|+. +++|||||||+ +||+|||.. . ..++
T Consensus 410 ~i~---~l~DWcISRQR-~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvl 485 (601)
T PF00133_consen 410 WID---NLRDWCISRQR-YWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVL 485 (601)
T ss_dssp HHH---T--EEE-EESS-SSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE
T ss_pred hcc---ccccchhhccC-CCCccceeeecccCcccccccccccccccccccccccccccccccccccccccceEEeeeec
Confidence 999 89999999999 999999941 0 2456
Q ss_pred EEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCC-cEEeeec
Q psy2393 269 YVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLP-NNIFVHG 347 (576)
Q Consensus 269 ~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g 347 (576)
++|||+...++...+. ... ...+|+.++|.+ +++.|+||+++|.........++....| +.+++||
T Consensus 486 D~WfdSg~~~~~~~~~-~~~--------~~~~~~~~~P~D----~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG 552 (601)
T PF00133_consen 486 DTWFDSGLWPFAVLGW-PEN--------DREEFEYWYPVD----LYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHG 552 (601)
T ss_dssp -HHHHHCTCHHHHTTS-TTC--------SCHHHHHHSSBS----EEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE-
T ss_pred cccccccCCccccccc-ccc--------cchhccccCCcc----cccCCccchhhHHHHhHhhccccccCCchheeeecc
Confidence 6677765555443321 000 013455555544 8999999999886554333333333444 8999999
Q ss_pred cEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccc
Q psy2393 348 FMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFN 397 (576)
Q Consensus 348 ~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs 397 (576)
||++ +|+|||||+||+|+|.+++++ ||+|++|+|+++.+. ..+|++||
T Consensus 553 ~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lRl~~~~~~~-~~~D~~~s 601 (601)
T PF00133_consen 553 FVLDEDGRKMSKSKGNVIDPEDIIEK-YGADALRLWLASSAD-PGQDINFS 601 (601)
T ss_dssp -EEETTSSB-BTTTTB--BHHHHHHH-T-HHHHHHHHHHHS--TTS-EEE-
T ss_pred cccccceeecccCCCcccCHHHHHHH-hCcHHHHHHHHhcCC-cccCcccC
Confidence 9998 899999999999999999999 999999999996543 44777775
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=486.43 Aligned_cols=294 Identities=35% Similarity=0.568 Sum_probs=263.7
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCC-------------
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGM------------- 79 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~------------- 79 (576)
+|+|++|||||||.+||||+++++++|+++||++++| ++|.+++|+|+||+||+.+|++.+.
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G-----~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~ 75 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRG-----YEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFRE 75 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCC-----CCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHH
Confidence 5899999999999999999999999999999999999 9999999999999999999999887
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceecc
Q psy2393 80 TPKEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGE 157 (576)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~ 157 (576)
+++++++++.++|+++|++|||++| .+++|.+++|.+.++++|.+|+ ++|+||++..++
T Consensus 76 ~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~-~~G~iY~~~~~v------------------ 136 (312)
T cd00668 76 DPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLY-EKGLIYRGTHPV------------------ 136 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHH-HCCCEEeeccee------------------
Confidence 8999999999999999999999887 9999999999999999999999 999999977443
Q ss_pred CCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHH
Q psy2393 158 CPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKE 236 (576)
Q Consensus 158 ~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 236 (576)
+...|||+++ +++++.+.++ ++.. .+|+..++.+.+
T Consensus 137 ----------------------------------------~~~~~~f~~~--~~l~~~~~~~-~~~~~~~p~~~~~~~~~ 173 (312)
T cd00668 137 ----------------------------------------RITEQWFFDM--PKFKEKLLKA-LRRGKIVPEHVKNRMEA 173 (312)
T ss_pred ----------------------------------------EeeeeEEEEc--HHHHHHHHHH-HhcCCcCChHHHHHHHH
Confidence 4567999999 9999999999 6665 478888999999
Q ss_pred HHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEe
Q psy2393 237 WLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI 316 (576)
Q Consensus 237 ~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~ 316 (576)
||+ +. .||||||++ +||+|+| ++++++||||.++|++..+..... ..+..+|+.+ +|++
T Consensus 174 ~l~--~~-~d~~isR~~-~WG~~~P---~~~i~~Wfds~~~~~~~~~~~~~~----------~~~~~~~~~d----i~~~ 232 (312)
T cd00668 174 WLE--SL-LDWAISRQR-YWGTPLP---EDVFDVWFDSGIGPLGSLGYPEEK----------EWFKDSYPAD----WHLI 232 (312)
T ss_pred HHh--CC-CCeEEeccC-CCCCcCC---cccccchhhccHHHHHHcCCCccc----------hhhhhcCCce----EEEE
Confidence 998 44 499999999 9999999 799999999999998876532211 3466777653 9999
Q ss_pred eecCcchhHhHHHHHHHhcCCC-CCcEEeeeccEEeCC-ccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCc
Q psy2393 317 GKDIFYFHILFWPAILKFSGRK-LPNNIFVHGFMTING-KKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDI 394 (576)
Q Consensus 317 G~D~~~fh~~~~~a~l~~~~~~-~p~~~~~~g~v~~~g-~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~ 394 (576)
|+||+++|+.++++++.+++.. +|+.+++|||++++| +|||||+||+|+++|++++ +|+|++|||+++..+.+ .|+
T Consensus 233 G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~-~~~da~R~~l~~~~~~~-~d~ 310 (312)
T cd00668 233 GKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEK-YGADALRYYLTSLAPYG-DDI 310 (312)
T ss_pred ecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcCCHHHHHHH-cCcHHHHHHHHhcCCcc-CCC
Confidence 9999999999999999888765 678999999999976 9999999999999999999 99999999999986554 555
Q ss_pred cc
Q psy2393 395 DF 396 (576)
Q Consensus 395 ~f 396 (576)
+|
T Consensus 311 ~~ 312 (312)
T cd00668 311 RL 312 (312)
T ss_pred CC
Confidence 54
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-59 Score=473.10 Aligned_cols=302 Identities=25% Similarity=0.342 Sum_probs=263.7
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
|++|++|||||||.+||||+++++.+|+++||+|++| ++|.+++|+||||+||+.+|++.|++|+++++++.+.+
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G-----~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~ 75 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQG-----YNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKM 75 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcC-----CCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 93 KKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 93 ~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
+++|++|||++| .+++|++++|.+.++++|.+|+ ++|+||+++.+++||
T Consensus 76 ~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~-~~G~iy~~~~~v~~~---------------------------- 126 (314)
T cd00812 76 KEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLY-EKGLAYKKEAPVNWC---------------------------- 126 (314)
T ss_pred HHHHHHhccceecccccccCCHHHHHHHHHHHHHHH-HCCCEEecCceeeee----------------------------
Confidence 999999999887 6889999999999999999999 999999999999995
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCccc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDI 249 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~i 249 (576)
+.++||||+++++++++.+.++ ++.. .+|+..++.+.+|++ |
T Consensus 127 ---------------------------~~~~~~f~~l~~~~~~~~l~~~-l~~~~~~p~~~~~~~~~~l~---------i 169 (314)
T cd00812 127 ---------------------------KLLDQWFLKYSETEWKEKLLKD-LEKLDGWPEEVRAMQENWIG---------C 169 (314)
T ss_pred ---------------------------CccceEEEEcCcHHHHHHHHHH-HHhcCcCCHHHHHHHHHHhe---------e
Confidence 3468999999888999999999 7665 589999999999985 9
Q ss_pred ccCCCCCCeecCCCCCcEEEEEeeccc---chhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhH-
Q psy2393 250 SRDAPYFGIKIPNTLEKYFYVWLDAPI---GYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHI- 325 (576)
Q Consensus 250 sR~~~~WG~~iP~~~~~~~~vw~d~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~- 325 (576)
||++ .||+|+|. ++++++|+|+.+ +|++.........|. .+. ..+.|+.|||.+ +|++|+||++||+
T Consensus 170 sR~~-~wGipvP~--~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~-~~~-~~~~~~~w~p~d----i~v~G~D~i~~h~~ 240 (314)
T cd00812 170 SRQR-YWGTPIPW--TDTMESLSDSTWYYARYTDAHNLEQPYEGD-LEF-DREEFEYWYPVD----IYIGGKEHAPNHLL 240 (314)
T ss_pred eeec-CCcCCcCc--ccccccccccHHHHHHHHhcccccCcchhh-hhh-hHHHHHHhCCCe----eeecchhHHHHHHH
Confidence 9999 99999998 789999999987 555433211000000 000 013466667643 9999999999996
Q ss_pred --hHHHHHHHhcCC---CCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccch
Q psy2393 326 --LFWPAILKFSGR---KLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNS 398 (576)
Q Consensus 326 --~~~~a~l~~~~~---~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~ 398 (576)
.+|++++.++|+ .+|+++++||||+++|+|||||+||+|+++|++++ +|+|++||++++.++ .+.+|++
T Consensus 241 ~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~~-~~~Da~R~~ll~~~~---~~~~f~~ 314 (314)
T cd00812 241 YSRFNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIKK-YGADAARLYILFAAP---PDADFDW 314 (314)
T ss_pred HHHHHHHHHcCcccccccCcHHheecceEecCccccCCcCCCCCCHHHHHHH-hCcHHHHHHHHhcCC---cCCCCCC
Confidence 788899998886 77888899999999999999999999999999999 999999999999855 6678875
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >KOG0434|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-57 Score=460.72 Aligned_cols=492 Identities=20% Similarity=0.266 Sum_probs=370.3
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH-cCC-------
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK-AGM------- 79 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~-~g~------- 79 (576)
.+++++|.+++|||.++|-+|-||+...+++|++.||..+.| |.|..-+||||||+|++...++ .|+
T Consensus 34 sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G-----~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~ 108 (1070)
T KOG0434|consen 34 SKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTG-----HHVERRFGWDTHGLPVEYEIDKKLGITGRDDVM 108 (1070)
T ss_pred hCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccc-----cceeeecccccCCCccceeechhcCCCCHHHHH
Confidence 357789999999999999999999999999999999999999 9999999999999999977654 343
Q ss_pred ---------CHHHHHHHHHHHHHHHHhhcC--ccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcc
Q psy2393 80 ---------TPKEFINNISSNRKKYLDGFY--IKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIF 148 (576)
Q Consensus 80 ---------~~~~~~~~~~~~~~~~l~~lg--i~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~ 148 (576)
.++.++-+|..++++...++| |+||+=|.|..+.+.+.++++|++|+ +||++|++-...+|+..|.|.
T Consensus 109 kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~-~kglVYRG~kVMP~STac~TP 187 (1070)
T KOG0434|consen 109 KMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELH-EKGLVYRGFKVMPYSTACTTP 187 (1070)
T ss_pred HHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHH-hcCceecceeeeccccccCCc
Confidence 466778899999999999999 69999999999999999999999999 999999999999999999999
Q ss_pred ccccceec----------------------------cCCC--------CCCCC---------------------------
Q psy2393 149 LPDRYIKG----------------------------ECPI--------CNAKD--------------------------- 165 (576)
Q Consensus 149 l~~~~v~~----------------------------~~p~--------c~~~~--------------------------- 165 (576)
|++-|... ++|+ |..++
T Consensus 188 LSNFEa~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k 267 (1070)
T KOG0434|consen 188 LSNFEAQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYK 267 (1070)
T ss_pred ccchhcccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhc
Confidence 98765321 1121 11100
Q ss_pred ------------------------------------------------------------CCC-----------------
Q psy2393 166 ------------------------------------------------------------QYG----------------- 168 (576)
Q Consensus 166 ------------------------------------------------------------~~g----------------- 168 (576)
++|
T Consensus 268 ~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~ 347 (1070)
T KOG0434|consen 268 NPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDS 347 (1070)
T ss_pred CcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCC
Confidence 001
Q ss_pred -Cccc--cCCCcCCC-----------C-c-------------------cCCCcccCCCCccEEeeecceeEecCchhhHH
Q psy2393 169 -DFCE--CCSSIYTP-----------T-K-------------------LINPYSILSGTKPIIKSSKHFFFKLSDKRCID 214 (576)
Q Consensus 169 -~~c~--~cg~~~~~-----------~-~-------------------l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~ 214 (576)
.-|+ ..|++.+. . + -.+|.|||+.+|+.++...+||++. ..+.+
T Consensus 348 ~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrV--k~~v~ 425 (1070)
T KOG0434|consen 348 LPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRV--KNIVD 425 (1070)
T ss_pred CCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhH--HHHHH
Confidence 0121 12332111 0 0 1259999999999999999999999 99999
Q ss_pred HHHHhhhcCC-CCChhHH-HHHHHHHhhcCCCCCcccccCCCCCCeecCC--CC--C-----------------------
Q psy2393 215 FLRKWAIHDK-RLQPEIV-NKIKEWLEKDNKFNDWDISRDAPYFGIKIPN--TL--E----------------------- 265 (576)
Q Consensus 215 ~l~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~--~~--~----------------------- 265 (576)
++++. ..+. ++|+.++ +++.+||+ +.+||.|||.| +||+|||- .+ .
T Consensus 426 ~ll~n-n~~t~WVP~~ikeKRF~NWL~---nARDW~iSRnR-~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlH 500 (1070)
T KOG0434|consen 426 QLLRN-NMKTHWVPQNIKEKRFANWLK---NARDWNISRNR-YWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLH 500 (1070)
T ss_pred HHHhc-ccccccCChhhhHHHHHHHHh---hhhhccccccc-ccCCCcceEEccCCceEEEeccHHHHHHhcCCcchhhh
Confidence 98887 5555 5677776 89999998 99999999999 99999993 01 0
Q ss_pred ----------------------cEEEEEeecccchhhhcchhhhhCCCCCcccc--cccccccccCCCcceEEEeeecCc
Q psy2393 266 ----------------------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNE--LRNFDEFISSPNTEQYHFIGKDIF 321 (576)
Q Consensus 266 ----------------------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~w~~~~~~~i~~~G~D~~ 321 (576)
.+++-||++.--..+. . .||. .+.|++-+|.+ .--.|-||.
T Consensus 501 Re~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq------~-----HyPFenk~~fe~~fPad----FIaEGlDQT 565 (1070)
T KOG0434|consen 501 RESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQ------R-----HYPFENKEEFEENFPAD----FIAEGLDQT 565 (1070)
T ss_pred hhhcCceecccCCCCcceehhhhHhhhhhccCCCcchh------h-----cCCccchHHHhhcCchH----hhhhccccc
Confidence 1111222221000000 0 0111 12233223221 223488887
Q ss_pred --chhHhHHHHHHHhc-CCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccc
Q psy2393 322 --YFHILFWPAILKFS-GRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFN 397 (576)
Q Consensus 322 --~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs 397 (576)
||++....+ .++ |.++.++++++|.|+- +|+|||||+.|..+|..++++ ||+|+||+||+.+.--....+.|.
T Consensus 566 RGWFYTL~Vls--T~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iink-YGADalRlYLInSPVvraE~LkFk 642 (1070)
T KOG0434|consen 566 RGWFYTLLVLS--TALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINK-YGADALRLYLINSPVVRAENLKFK 642 (1070)
T ss_pred cchhhHHHHHH--HHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHh-hcchheeeeeecCccccccccccc
Confidence 454443221 222 4444489999999999 999999999999999999999 999999999998744455678999
Q ss_pred hhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcC-CCC---C-Cccc----CChHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2393 398 SQSFISCVNSDLIGKYINIASRSSSFIEKYFK-GYL---N-MKWV----KDNDTFLSKLRVVSSSIQKYYENRNFNKVLY 468 (576)
Q Consensus 398 ~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~-~~~---~-~~~~----~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~ 468 (576)
.+...+.. ++.+-.|+|.+....+-...... +.. . ...+ .| +|+++...++..-+++-|+.|+...++-
T Consensus 643 eeGVrevv-k~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmD-rWI~a~~qslv~fv~~eM~~YrLytVvp 720 (1070)
T KOG0434|consen 643 EEGVREVV-KDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMD-RWILASTQSLVGFVREEMDQYRLYTVVP 720 (1070)
T ss_pred hhhHHHHH-HhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHH-HHHHHHHHHHHHHHHHHHHheehhhhHH
Confidence 99888877 44556788887555432221111 111 1 1111 26 9999999999999999999999999999
Q ss_pred HHHHHH-HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 469 IVIEQT-NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 469 ~l~~~~-~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
.+..|+ .+.|+|+..++.+.-.+ +....+..++.+|.++|..+.++++||+||++|.|||.|.-
T Consensus 721 ~llkfiD~LTNwYiR~nRrrlkGe--~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~ 785 (1070)
T KOG0434|consen 721 RLLKFIDELTNWYIRFNRRRLKGE--NGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKK 785 (1070)
T ss_pred HHHHHHHHhhhhheehhhhhhcCC--CchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh
Confidence 999999 89999999988655332 23456777889999999999999999999999999999963
|
|
| >KOG0435|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-57 Score=463.12 Aligned_cols=460 Identities=21% Similarity=0.256 Sum_probs=343.2
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
+++| ||.+..|||+|.|||||.|.|++.|+++||.||+| |+|++.+|||.+|+|.|.+|.+.|.+|..+....+
T Consensus 56 sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~G-----ynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI 129 (876)
T KOG0435|consen 56 SKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKG-----YNVIHPMGWDAFGLPAENAAIERGVHPASWTINNI 129 (876)
T ss_pred CCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcC-----ceeecCCcccccCCchhhHHHhcCCCchhhhHHHH
Confidence 4455 89999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCC
Q psy2393 90 SNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY 167 (576)
Q Consensus 90 ~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~ 167 (576)
+.++++|.+||+ +||+.++|.+|+|..+.|++|.+|+ ++|++|+.+..++|||.+.|.|++.+|-
T Consensus 130 ~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLf-e~GLAYq~Ea~VNWDPvD~TVLAnEQVD------------ 196 (876)
T KOG0435|consen 130 AKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLF-EKGLAYQAEAEVNWDPVDKTVLANEQVD------------ 196 (876)
T ss_pred HHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHH-HhhhhhccccccccCcccceeecchhhc------------
Confidence 999999999999 5579999999999999999999999 9999999999999999999999865441
Q ss_pred CCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhh------
Q psy2393 168 GDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEK------ 240 (576)
Q Consensus 168 g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~------ 240 (576)
.++.+||+|++|+-+..+|||+++ +++++++++. ++.- .||. +++..++|+.+
T Consensus 197 ----------------~~G~SWRSGA~VEkK~LrQWfikt--taYAk~L~d~-L~~L~~W~~-vk~mQrnWIG~~~G~el 256 (876)
T KOG0435|consen 197 ----------------ADGCSWRSGAKVEKKKLRQWFIKT--TAYAKRLLDG-LETLPEWPE-VKDMQRNWIGRCDGAEL 256 (876)
T ss_pred ----------------ccCccccccchhhHHHHHHHHhhh--hHHHHHHHHH-HHhhhhhhh-HHHHHHhhcccccceEE
Confidence 246789999999999999999999 9999999998 5554 7887 88889999875
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 241 -------------------------------------------------------------------------------- 240 (576)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (576)
T Consensus 257 ~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~ 336 (876)
T KOG0435|consen 257 MFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVAD 336 (876)
T ss_pred EEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEec
Confidence
Q ss_pred -------------------------------------------------------------------------------c
Q psy2393 241 -------------------------------------------------------------------------------D 241 (576)
Q Consensus 241 -------------------------------------------------------------------------------~ 241 (576)
+
T Consensus 337 ~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs 416 (876)
T KOG0435|consen 337 YVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVS 416 (876)
T ss_pred hhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhccccccchhHHHHHHHHHHHHHHhcCCCcceec
Confidence 4
Q ss_pred CCCCCcccccCCCCCCeecCCC---CCcEEEEEeecc-------------cchhhhcch----hhhhCCCCCcccc----
Q psy2393 242 NKFNDWDISRDAPYFGIKIPNT---LEKYFYVWLDAP-------------IGYLASLKN----FFEKGGPKKKYNE---- 297 (576)
Q Consensus 242 ~~~~dw~isR~~~~WG~~iP~~---~~~~~~vw~d~~-------------~~~~~~~~~----~~~~~g~~~~~~~---- 297 (576)
..++||-||||| |||+|||.- ....+.|=.+.+ ...++.... -|..+|.+++..-
T Consensus 417 ~kLkDWLiSRQR-yWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMD 495 (876)
T KOG0435|consen 417 YKLKDWLISRQR-YWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMD 495 (876)
T ss_pred chhhhhhhhhhh-ccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccc
Confidence 457899999999 999999951 111111100000 001111111 1222332211111
Q ss_pred ----------------------cccccccc-cCCCcceEEEeeecCcchh---HhHHHHHHHhcCC---CCC-cEEeeec
Q psy2393 298 ----------------------LRNFDEFI-SSPNTEQYHFIGKDIFYFH---ILFWPAILKFSGR---KLP-NNIFVHG 347 (576)
Q Consensus 298 ----------------------~~~~~~~w-~~~~~~~i~~~G~D~~~fh---~~~~~a~l~~~~~---~~p-~~~~~~g 347 (576)
+.+....| |- .++++|++|.-.| +.+|.-+|...|. +.| +.++..|
T Consensus 496 TFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPV----DvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QG 571 (876)
T KOG0435|consen 496 TFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPV----DVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQG 571 (876)
T ss_pred hhhccceeeEeecCCCCcccccchhhhhccCce----eEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhh
Confidence 12223344 22 2999999997555 4455556666553 233 5666666
Q ss_pred cEEeC--------------------------------------CccccccCCCccChhHHhhcCCChhHHHHHHHhhCCC
Q psy2393 348 FMTIN--------------------------------------GKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNN 389 (576)
Q Consensus 348 ~v~~~--------------------------------------g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~ 389 (576)
+|... =+|||||++|+|+|.+++.+ ||+|.+|++++..+|.
T Consensus 572 mV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~-yG~D~tRl~ilf~ap~ 650 (876)
T KOG0435|consen 572 MVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLE-YGVDTTRLYILFAAPP 650 (876)
T ss_pred cccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHH-hCchHHHHHHHhhCCc
Confidence 66531 16999999999999999999 9999999999998765
Q ss_pred CCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC--ccc----CChHHHHHHHHHHHHHHHHHHH-hhh
Q psy2393 390 KIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM--KWV----KDNDTFLSKLRVVSSSIQKYYE-NRN 462 (576)
Q Consensus 390 ~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~--~~~----~d~~~l~~~l~~~~~~v~~a~~-~~~ 462 (576)
. .+++.+.+.+.-. ..+..+++++..++.+ ...++..++ .++ .+...+.+..+.++.++.+.++ .+.
T Consensus 651 ~-~~~nW~es~i~Gi--~rwl~riw~l~~~~~~---ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~s 724 (876)
T KOG0435|consen 651 R-DPINWNESAIPGI--KRWLQRIWALVSQILQ---ARDDGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFS 724 (876)
T ss_pred c-cccccccccchhH--HHHHHHHHHHHHHHHH---HHhcCCcccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4 6667775544322 3346666666654433 222232222 111 1225788999999999999996 677
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 463 FNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 463 ~~~~~~~l~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
++.++..++.|.+...+-+.....+. + ....+|..+.++|+|++||.|+|+|..|+..
T Consensus 725 lNtaIS~~m~ltN~l~~a~k~~~~h~----~-----------~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~ 782 (876)
T KOG0435|consen 725 LNTAISDMMGLTNALKKALKIVLVHS----P-----------EFERALEALVIMLAPFAPHVASELWSALAND 782 (876)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcC----h-----------HHHHHHHHHHHHHhccCchhHHHHHHHHhcc
Confidence 99999999998876555444333221 0 1113566788999999999999999999954
|
|
| >PTZ00399 cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-49 Score=429.56 Aligned_cols=384 Identities=14% Similarity=0.142 Sum_probs=280.3
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHh-hcCCCCCCcceEEecCCCcccHHHHHHHHHcCCC-HHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQC-MQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMT-PKEFINNISS 90 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~-~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~-~~~~~~~~~~ 90 (576)
++|+|+ ||+++.+||||||++|.+|+++||++ ++| |+|.||+|+||||++|+.+|++.|++ +.+++++|.+
T Consensus 62 ~~Y~CG--PTvYd~~HiGhart~v~~Dil~R~l~~~~G-----y~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~ 134 (651)
T PTZ00399 62 RWYTCG--PTVYDSSHLGHARTYVTFDIIRRILEDYFG-----YDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEK 134 (651)
T ss_pred EEEEeC--CCccCCcccccchHHHHHHHHHHHHHHhcC-----CceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHH
Confidence 556666 78889999999999999999999999 999 99999999999999999999999999 9999999999
Q ss_pred HHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 91 NRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 91 ~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
.|.++|++|||.++.++.+. .+|...+..++.+|. ++|++|+..+.+|||...
T Consensus 135 ~f~~d~~~Lni~~p~~~~r~-tehi~~ii~~i~~Li-~~G~aY~~~gsvyFd~~~------------------------- 187 (651)
T PTZ00399 135 EFFEDMKALNVRPPDVITRV-SEYVPEIVDFIQKII-DNGFAYESNGSVYFDVEA------------------------- 187 (651)
T ss_pred HHHHHHHHcCCCCCccccCc-CccHHHHHHHHHHHH-HCCCEEEECCeEEEEchh-------------------------
Confidence 99999999999886666555 489999999999999 999999988888775433
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHH-HHHHHHHhhcCC-CCCcc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIV-NKIKEWLEKDNK-FNDWD 248 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~dw~ 248 (576)
+.+. ... +.+ +.|..+ +....... .+ +.+-+
T Consensus 188 -----------------------------------------f~~~-~~~-Yg~--L~p~~~~~~~~~~~g--~~~l~~~~ 220 (651)
T PTZ00399 188 -----------------------------------------FRKA-GHV-YPK--LEPESVADEDRIAEG--EGALGKVS 220 (651)
T ss_pred -----------------------------------------cccc-hhh-HHh--hChhhcCCHHHHhcc--cCCccccC
Confidence 2111 000 000 111111 11111111 11 22222
Q ss_pred -cccCCCC---CCeecCCCCCcEEEEEeecccc------hhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeee
Q psy2393 249 -ISRDAPY---FGIKIPNTLEKYFYVWLDAPIG------YLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGK 318 (576)
Q Consensus 249 -isR~~~~---WG~~iP~~~~~~~~vw~d~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~ 318 (576)
++|...+ ||.+.|+++. |. ++.| ++.+..-...-.| . .-.||.+|.
T Consensus 221 ~~Kr~~~DFaLWk~~kpgep~-----W~-SpwG~GrPGWHiECsam~~~~lg--------~----------~~DIh~gG~ 276 (651)
T PTZ00399 221 GEKRSPNDFALWKASKPGEPS-----WD-SPWGKGRPGWHIECSAMASNILG--------D----------PIDIHSGGI 276 (651)
T ss_pred cCCCCCccHHhhCCCCCCCCC-----CC-CCCCCCCCCchHHHHHHHHHHcC--------C----------cceeeccCC
Confidence 4554334 6766665433 32 2222 2211110011112 1 112999999
Q ss_pred cCcchhHhHHHHHHHhc-CC-CCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCccc
Q psy2393 319 DIFYFHILFWPAILKFS-GR-KLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDF 396 (576)
Q Consensus 319 D~~~fh~~~~~a~l~~~-~~-~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~f 396 (576)
|++|+||.+..|+..++ |. +.+++++|+|||+++|+|||||+||+|+|+|+++. ||+|++|||+++. ++..+++|
T Consensus 277 DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLek-ygaDaLR~~lLs~--~~~~dldF 353 (651)
T PTZ00399 277 DLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSK-YTARQIRLLFLLH--KWDKPMNY 353 (651)
T ss_pred CCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHH-cChHHHHHHHHhc--CCCCCCcc
Confidence 99999999999998886 43 44578888899999999999999999999999999 9999999999986 67789999
Q ss_pred chhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc-CChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Q psy2393 397 NSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWV-KDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQT 474 (576)
Q Consensus 397 s~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~ 474 (576)
|++.+.+..+. .+.+.|++.|+.+++.+..... +..+. .| .+|+..+..+.+.+.+++ ++|+++.|+..|++|+
T Consensus 354 S~e~l~~a~~~--~~~l~n~~~rl~s~l~~~~~~~-~~~~~~~d-~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv 429 (651)
T PTZ00399 354 SDESMDEAIEK--DKVFFNFFANVKIKLRESELTS-PQKWTQHD-FELNELFEETKSAVHAALLDNFDTPEALQALQKLI 429 (651)
T ss_pred CHHHHHHHHHH--HHHHHHHHHHHHHHHhhccccc-cccCCHHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99988777544 5678888888877665421100 11122 24 889999999999999999 7899999999999999
Q ss_pred HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHH
Q psy2393 475 NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTI 515 (576)
Q Consensus 475 ~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ 515 (576)
..+|.|++.. .......+.++..++..++.+|++
T Consensus 430 ~~~N~yi~~~-------~~~~~~ll~~v~~~l~~~l~ILGl 463 (651)
T PTZ00399 430 SATNTYLNSG-------EQPSAPLLRSVAQYVTKILSIFGL 463 (651)
T ss_pred HHHHHHHhcc-------ccchHHHHHHHHHHHHHHHhcccC
Confidence 9999999621 111122244555666677777776
|
|
| >PLN02946 cysteine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-48 Score=406.81 Aligned_cols=360 Identities=15% Similarity=0.139 Sum_probs=268.3
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
-++|+| .|||+|++||||+|++|.+|+++||+++.| ++|.||+|+||||+||+.+|++.|+++.+++++|.+.
T Consensus 81 v~~Y~C--GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~G-----y~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~ 153 (557)
T PLN02946 81 VGMYVC--GVTAYDLSHIGHARVYVTFDVLYRYLKHLG-----YEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEE 153 (557)
T ss_pred eeEEEe--CCccCCCCccccchhhHHHHHHHHHHHhcC-----CcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 355666 499999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcc
Q psy2393 92 RKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFC 171 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c 171 (576)
|.++|++|||. +.+++|...+|...++.++++|. +||++|+..+.+|||...-. .||..+
T Consensus 154 f~~d~~~LnI~-~p~~~pratehi~~ii~~i~~Li-~kG~aY~~~g~VYFdv~~f~------------------~YG~Ls 213 (557)
T PLN02946 154 FLSDMAYLHCL-PPSVEPRVSDHIPQIIDMIKQIL-DNGCAYRVDGDVYFSVDKFP------------------EYGKLS 213 (557)
T ss_pred HHHHHHHCCCC-CCCeecCcchhHHHHHHHHHHHH-HCCCEEEECCeEEEecCcch------------------hhhhcC
Confidence 99999999997 44556666799999999999999 99999999999999876531 244322
Q ss_pred ccCCCcCCCCccCCCcccCCCCccEE--eeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCccc
Q psy2393 172 ECCSSIYTPTKLINPYSILSGTKPII--KSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDI 249 (576)
Q Consensus 172 ~~cg~~~~~~~l~~p~~~~~~~~~~~--~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~i 249 (576)
- + +.+++ +.|..++. ...+.--|.| | +.. ..|-.-|
T Consensus 214 ~---~--~l~~l------~~g~rv~~~~~K~np~DFaL-----------W--K~~----------------k~ge~~W-- 251 (557)
T PLN02946 214 G---R--KLEDN------RAGERVAVDSRKKNPADFAL-----------W--KAA----------------KEGEPFW-- 251 (557)
T ss_pred C---C--ChhHh------hcCCCCCcccccCCccccce-----------e--ccC----------------CCCCCCc--
Confidence 1 0 00111 11211111 1111111222 1 000 0111223
Q ss_pred ccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHH
Q psy2393 250 SRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWP 329 (576)
Q Consensus 250 sR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~ 329 (576)
.. .||...|+ | ++.+.....+-.| ..++ ||.+|.|++|+||.+..
T Consensus 252 --~S-PWG~GRPG--------W------HIECSaMs~~~lG--------~~~D----------IH~GG~DL~FPHHENEi 296 (557)
T PLN02946 252 --DS-PWGPGRPG--------W------HIECSAMSAAYLG--------HSFD----------IHGGGMDLVFPHHENEI 296 (557)
T ss_pred --cC-CCCCCCCc--------H------HHHHHHHHHHHcC--------CCee----------EeccccccCCCcccchH
Confidence 33 57766664 2 3333222222233 2333 99999999999999999
Q ss_pred HHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHH
Q psy2393 330 AILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSD 408 (576)
Q Consensus 330 a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~ 408 (576)
|+..+. |.+..++|+|+|||+++|+|||||+||+++++|++++ |++|++|||+++. +++.+++|+++.+.... .
T Consensus 297 AQsea~~g~~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~-y~~dalR~~lLs~--hyr~~l~fs~e~L~~a~--~ 371 (557)
T PLN02946 297 AQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDL-YHPLALRLFLLGT--HYRSPINYSDVQLESAS--E 371 (557)
T ss_pred HHHHHHhCCCCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHh-cCccceeeeeecc--CCCCCcEecHHHHHHHH--H
Confidence 988874 5555589999999999999999999999999999999 9999999999987 78899999999876663 3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 409 LIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 409 ~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
.+.++.+++.|+.+.+.+.... ... ...+ ..+...+..+.+.+.+|| ++++++.|+..|+++++..|.+++.
T Consensus 372 ~l~~l~~~~~~~~~~l~~~~~~-~~~-~~~~-~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~~~ 444 (557)
T PLN02946 372 RIFYIYQTLHDCEESLQQHDST-FEK-DSVP-PDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLLHT 444 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhccc-ccc-cccc-hhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhh
Confidence 4678889998887666432110 000 0011 233445667778899999 6999999999999999999998864
|
|
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-47 Score=403.48 Aligned_cols=349 Identities=20% Similarity=0.273 Sum_probs=260.0
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
..++|+|. |||||++||||+|+++.+|+++||+|++| ++|.|++|+||+|++|+.+|++.|.+|+++++++.+
T Consensus 23 ~v~~yvcg--Ptvy~~~HiGHar~~v~~Dvl~R~lr~~G-----~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~ 95 (463)
T PRK00260 23 KVKMYVCG--PTVYDYAHIGHARSFVVFDVLRRYLRYLG-----YKVTYVRNITDIDDKIIKRANEEGESIKELTERYIA 95 (463)
T ss_pred cceEEEeC--CccCCCcccccchhHHHHHHHHHHHHhcC-----CceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34666665 88899999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCc-cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCC
Q psy2393 91 NRKKYLDGFYI-KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGD 169 (576)
Q Consensus 91 ~~~~~l~~lgi-~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~ 169 (576)
.|.++|++||| .+|.+.+++ +|...+++++++|. ++|++|+++++++||+.+-. .||.
T Consensus 96 ~f~~~~~~Lgi~~~d~~~r~t--~~~~~~~~~i~~L~-~kG~aY~~~~~Vyfdv~~~~------------------~yg~ 154 (463)
T PRK00260 96 AFHEDMDALNVLPPDIEPRAT--EHIPEIIELIERLI-DKGHAYEADGDVYFDVRKFP------------------DYGK 154 (463)
T ss_pred HHHHHHHHcCCCCCCcccccc--ccHHHHHHHHHHHH-HCCCEEEecCeEEEeccccc------------------cccc
Confidence 99999999999 668777776 68999999999999 99999999999999987531 1332
Q ss_pred ccccCCCcCCCCccCCCcccCCCCccEE--eeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCc
Q psy2393 170 FCECCSSIYTPTKLINPYSILSGTKPII--KSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDW 247 (576)
Q Consensus 170 ~c~~cg~~~~~~~l~~p~~~~~~~~~~~--~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw 247 (576)
..- .+.+++. .|..+.. .....--|.| |... ..|-.-|
T Consensus 155 ls~-----~~~~~~~------~~~~~~~~~~K~~~~DF~L------------------wk~~-----------~~~~~~w 194 (463)
T PRK00260 155 LSG-----RNLDELQ------AGARVEVAEEKRDPLDFAL------------------WKAA-----------KPGEPSW 194 (463)
T ss_pred CCC-----CCHHHHh------ccCcCCcccCCCCccccce------------------ecCC-----------CCCCCCC
Confidence 210 0000110 1111110 0000011111 1000 0011112
Q ss_pred ccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhH
Q psy2393 248 DISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILF 327 (576)
Q Consensus 248 ~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~ 327 (576)
.. .||...|+ | ++.+.....+..| ..++ ||.+|.|++|+|+.+
T Consensus 195 ----~s-~~g~grpg--------W------hiecsam~~~~lg--------~~~D----------ih~gG~DlifpHh~n 237 (463)
T PRK00260 195 ----ES-PWGKGRPG--------W------HIECSAMSTKYLG--------ETFD----------IHGGGADLIFPHHEN 237 (463)
T ss_pred ----CC-CCCCCCCC--------h------hHHHHHHHHHhcC--------CCcc----------eecCccccCCCchHh
Confidence 22 35544443 2 2222111111122 1223 999999999999999
Q ss_pred HHHHHHh-cCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhh
Q psy2393 328 WPAILKF-SGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406 (576)
Q Consensus 328 ~~a~l~~-~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~ 406 (576)
..|+..+ .|.+.++.++|+|||..+|+|||||+||+|+++|+++. ||+|++||++++. +++.+++|+.+.+....
T Consensus 238 eiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~-~~~d~lR~~ll~~--~~~~~~~fs~~~l~~a~- 313 (463)
T PRK00260 238 EIAQSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKK-YDPEVLRFFLLSA--HYRSPLNFSEEALEQAK- 313 (463)
T ss_pred HHHHHHHhcCCCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHH-cCchHhHHHHHhC--CCCCCCccCHHHHHHHH-
Confidence 9987666 45444578999999999999999999999999999999 9999999999986 67789999999766553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
..+++++|++.++.. ...| .++...+..+.+.+.++| ++|+++.|+..|+++++..|.|++.
T Consensus 314 -~~~~rl~~~~~~~~~-------------~~~d-~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~ 376 (463)
T PRK00260 314 -KALERLYNALAETAL-------------GEDD-EALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALET 376 (463)
T ss_pred -HHHHHHHHHHHHhhh-------------ccch-hhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhc
Confidence 347788887755420 0124 788889999999999999 5999999999999999999999865
|
|
| >PRK14536 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=401.02 Aligned_cols=363 Identities=15% Similarity=0.142 Sum_probs=260.0
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcc----------cHHHHHHHHHcCCCHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH----------GAAIMIAAEKAGMTPK 82 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~----------G~~i~~~a~~~g~~~~ 82 (576)
++-++.+.||||+++||||+|++|.+|+++||++++| ++|.||+|++|. |++|+.+|++.|++|.
T Consensus 23 ~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G-----~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~ 97 (490)
T PRK14536 23 HVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLG-----YRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVL 97 (490)
T ss_pred ceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcC-----CceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHH
Confidence 3444444599999999999999999999999999999 999999855555 9999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCC
Q psy2393 83 EFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICN 162 (576)
Q Consensus 83 ~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~ 162 (576)
+++++|.+.|.++|++|||.++.++ +...+|...++.++++|. ++|++|+..+.+|||+..
T Consensus 98 e~a~~~~~~f~~d~~~Lni~~~~~~-~rat~hi~~ii~~i~~L~-~kG~aY~~~~~vyFdv~~----------------- 158 (490)
T PRK14536 98 EIAAHYTAAFFRDTARLNIERPSIV-CNATEHIQDMIALIKRLE-ARGHTYCAGGNVYFDIRT----------------- 158 (490)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcee-cCcccHHHHHHHHHHHHH-HCCCEEEECCeEEEeCCc-----------------
Confidence 9999999999999999999886555 334689999999999999 999999999999998743
Q ss_pred CCCCCCCccccCCCc--CCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhh
Q psy2393 163 AKDQYGDFCECCSSI--YTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEK 240 (576)
Q Consensus 163 ~~~~~g~~c~~cg~~--~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 240 (576)
|+.||+. .+.+++. .|..+... ..++.. ..+.-|..+
T Consensus 159 --------~~~YG~Ls~~~~~~l~------~g~~v~~~------------~~K~np---------------~DFaLWK~~ 197 (490)
T PRK14536 159 --------FPSYGSLASAAVEDLQ------AGARIEHD------------TNKRNP---------------HDFVLWFTR 197 (490)
T ss_pred --------ccchhhhcCCCHHHhh------cCCcCCCC------------CCCCCc---------------hhchhcccc
Confidence 2223321 0111111 11111100 000000 001112110
Q ss_pred cCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecC
Q psy2393 241 DNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDI 320 (576)
Q Consensus 241 ~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~ 320 (576)
.+.++..+++.. .||.+.|+ | ++.+.....+-.| ..++ ||.+|.|+
T Consensus 198 -~~~~~~~~~W~S-pWG~GRPG--------W------HIECsaMs~~~lg--------~~~D----------IH~GG~Dl 243 (490)
T PRK14536 198 -SKFENHALTWDS-PWGRGYPG--------W------HIECSAMSMKYLG--------EQCD----------IHIGGVDH 243 (490)
T ss_pred -cCCCCCCCcccC-CCCCCCCC--------h------HHHHHHHHHHHcC--------Ccee----------EEeccccC
Confidence 112233456666 79999886 4 3333222222223 2233 99999999
Q ss_pred cchhHhHHHHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchh
Q psy2393 321 FYFHILFWPAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQ 399 (576)
Q Consensus 321 ~~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~ 399 (576)
+||||.+++|+.+++ |.+.+++|+|+||+.++|+|||||+||+|+++|+++.|++++++||+++++ +++.+++||++
T Consensus 244 iFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~--~yr~~l~Fs~e 321 (490)
T PRK14536 244 IRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGG--HYRSQLAFSWE 321 (490)
T ss_pred CCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhC--CCCCCCCCCHH
Confidence 999999999998885 667779999999999999999999999999999999889999999999997 88899999999
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHcC---CCCCCccc--CChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Q psy2393 400 SFISCVNSDLIGKYINIASRSSSFIEKYFK---GYLNMKWV--KDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQ 473 (576)
Q Consensus 400 ~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~---~~~~~~~~--~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~ 473 (576)
.+.+..+ .+.++.+++.++......... +....... .. ..+...+..+.+.+.+|| ++++++.|+..|+++
T Consensus 322 ~l~~a~~--~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~ 398 (490)
T PRK14536 322 ALKTAKA--ARRSLVRRVARVVDAARATTGSVRGTLAECAAERVA-ESRASESELLLTDFRAALEDDFSTPKALSELQKL 398 (490)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHhhhccccccccccccccccccc-chhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9877754 366676766655322111000 00000000 00 111233456778888999 689999999999999
Q ss_pred HHHHHH
Q psy2393 474 TNFINI 479 (576)
Q Consensus 474 ~~~~n~ 479 (576)
++..|.
T Consensus 399 ~~~~n~ 404 (490)
T PRK14536 399 VKDTSV 404 (490)
T ss_pred HHHhhh
Confidence 987774
|
|
| >TIGR00435 cysS cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-46 Score=393.22 Aligned_cols=350 Identities=19% Similarity=0.218 Sum_probs=252.4
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
++-++|+|. |||||++||||+|++|.+|+++||++++| ++|.|++|+||||++|+.+|++.|++|.++++++.
T Consensus 20 ~~v~~yvcg--ptvy~~~HiGhar~~v~~Dvl~R~lr~~G-----~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~ 92 (465)
T TIGR00435 20 GKVKMYVCG--PTVYDYCHIGHARTAIVFDVLRRYLRYLG-----YKVQYVQNITDIDDKIIKRARENGESVYEVSERFI 92 (465)
T ss_pred CcceEEEec--CccCCCcccccchHHHHHHHHHHHHHHcC-----CcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHH
Confidence 344666666 79999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccccccc-cCCChhhHHHHHHHHHHHHhcCCcEEecc-eeeeecCCCCccccccceeccCCCCCCCCCC
Q psy2393 90 SNRKKYLDGFYIKFDNWY-STDSIENIDLVQKIYDTLYNKAKLIINKK-INQFFDPIKNIFLPDRYIKGECPICNAKDQY 167 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d~~~-~t~~~~~~~~v~~~~~~L~~~~g~iy~~~-~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~ 167 (576)
+.|.+++++|||++|.+. +++ .|...+.+++++|. ++|++|+.+ +.+|||+.+.. .|
T Consensus 93 ~~f~~dl~~LgI~~d~~~~raT--~hi~~i~~~i~~L~-ekG~aY~~~~g~vyfdv~~~~------------------~y 151 (465)
T TIGR00435 93 EAYFEDMKALNVLPPDLEPRAT--EHIDEIIEFIEQLI-EKGYAYVSDNGDVYFDVSKFK------------------DY 151 (465)
T ss_pred HHHHHHHHHhCCCCCcCCcccc--ccHHHHHHHHHHHH-HCCCEEEecCCcEEEeccccc------------------hh
Confidence 999999999999998754 544 79999999999999 999999998 99999987632 12
Q ss_pred CCccccCCCcCCCCccCCCcccCCCCccEE--eeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCC
Q psy2393 168 GDFCECCSSIYTPTKLINPYSILSGTKPII--KSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFN 245 (576)
Q Consensus 168 g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~--~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (576)
|... ++ +.+++. .|..+.. .....--|.| |... ..|-.
T Consensus 152 G~ls---~~--~~~~~~------~~~~~~~~~~K~~p~DF~L------------------wk~~-----------~~~~~ 191 (465)
T TIGR00435 152 GKLS---KQ--DLDQLE------AGARVDVDEAKRNKLDFVL------------------WKSS-----------KEGEP 191 (465)
T ss_pred ccCC---CC--CHHHHh------cccccCcccccCCCCCcee------------------eCCC-----------CCCCC
Confidence 2111 00 000000 0000000 0000011111 0000 01111
Q ss_pred CcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhH
Q psy2393 246 DWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHI 325 (576)
Q Consensus 246 dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~ 325 (576)
.| .. .||...|+ | ++.+.....+-.| ..++ +|.+|.|++|+|+
T Consensus 192 ~w----~s-pwG~grpg--------W------hiecsam~~~~lg--------~~~D----------ih~gG~Dl~fpHh 234 (465)
T TIGR00435 192 KW----DS-PWGKGRPG--------W------HIECSAMNDKYLG--------DQID----------IHGGGVDLIFPHH 234 (465)
T ss_pred CC----cC-CCCCCCCC--------c------HhHHHHHHHHhcC--------CCce----------eeccccccccchH
Confidence 22 22 46655554 2 2221111111122 1222 9999999999999
Q ss_pred hHHHHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhh
Q psy2393 326 LFWPAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISC 404 (576)
Q Consensus 326 ~~~~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~ 404 (576)
.++.|+..++ |.+.+++++|+|||.++|+|||||+||+|+++|+++. ||+|++|||+++. +++.+++|+++.+.+.
T Consensus 235 ene~aqs~a~~g~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~-~~~dalR~~ll~~--~~~~~l~fs~~~l~~a 311 (465)
T TIGR00435 235 ENEIAQSEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKN-YDPEILRYFLLSV--HYRSPLDFSEELLEAA 311 (465)
T ss_pred HHHHHHHHHhcCCCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHH-CCHHHHHHHHHhC--CCCCCCccCHHHHHHH
Confidence 9999987774 6556689999999999999999999999999999999 9999999999986 6778999999987776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHH
Q psy2393 405 VNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFIN 478 (576)
Q Consensus 405 ~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n 478 (576)
. ..+.+++|++.++..... +... .. ..+......+.+.+.+|| ++++++.|+..|+++++..|
T Consensus 312 ~--~~~~rl~~~~~~~~~~~~----~~~~--~~---~~~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n 375 (465)
T TIGR00435 312 K--NALERLYKALRVLDTTLA----YSGN--QS---LNKFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSIN 375 (465)
T ss_pred H--HHHHHHHHHHHHHHhhhc----cccc--cc---cccchhHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh
Confidence 4 458888898877643221 1000 00 001112334567788888 68999999999999999888
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). |
| >PRK14534 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=387.38 Aligned_cols=364 Identities=18% Similarity=0.190 Sum_probs=261.9
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcc----------cHHHHHHHHHcCCCH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH----------GAAIMIAAEKAGMTP 81 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~----------G~~i~~~a~~~g~~~ 81 (576)
.++-++.+.|||++.+||||+|++|.+|+++||++++| ++|.||.|++|. |++|+.+|++.|+++
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G-----~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~ 94 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLK-----YNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTV 94 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcC-----CceEEEEeccccccccCCccCCCcHHHHHHHHcCCCH
Confidence 34445555699999999999999999999999999999 999997777776 899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCC
Q psy2393 82 KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPIC 161 (576)
Q Consensus 82 ~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c 161 (576)
.+++++|.+.|.+++++|||.++.++.+. .+|...++.++++|. ++|++|+..+.+|||+.+-.
T Consensus 95 ~e~a~~~~~~f~~d~~~Lni~~~~~~p~a-tehi~~~i~~i~~L~-~kG~aY~~~~~vyFdv~~~~-------------- 158 (481)
T PRK14534 95 YEISRFFTEAFFDDCKKLNIVYPDKVLVA-SEYIPIMIEVVKVLE-ENGFTYFVNGNVYFDTSCFK-------------- 158 (481)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCceecCc-cchHHHHHHHHHHHH-HCCCEEEECCeEEEeccccc--------------
Confidence 99999999999999999999999888764 589999999999999 99999999999999987621
Q ss_pred CCCCCCCCccccCCCcCCCCccCC-CcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhh
Q psy2393 162 NAKDQYGDFCECCSSIYTPTKLIN-PYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEK 240 (576)
Q Consensus 162 ~~~~~~g~~c~~cg~~~~~~~l~~-p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 240 (576)
.||..+ | .++.+ +.|. |..+. + ...++....+ .-|-.
T Consensus 159 ----~YG~ls---~-----~~l~~l~~~~--~~~v~----------~--~~~K~np~DF---------------aLWK~- 196 (481)
T PRK14534 159 ----SYGQMA---G-----INLNDFKDMS--VSRVE----------I--DKSKRNKSDF---------------VLWFT- 196 (481)
T ss_pred ----chhhhc---C-----CCHHHHhhhc--cCcCC----------c--ccCCCCcccc---------------hhcCc-
Confidence 233221 0 01111 0110 11010 0 0000000000 01110
Q ss_pred cCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecC
Q psy2393 241 DNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDI 320 (576)
Q Consensus 241 ~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~ 320 (576)
..++++..+++.. .||...|+ | ++.+.....+..| ..+ .||++|.|+
T Consensus 197 ~~~~~~~~~~w~s-pWG~GrPg--------W------HiECsam~~~~lg--------~~~----------DIH~GG~Dl 243 (481)
T PRK14534 197 NSKFKDQEMKWDS-PWGFGYPS--------W------HLECAAMNLEYFK--------STL----------DIHLGGVDH 243 (481)
T ss_pred CCcCCCCCCeecC-CCCCcCCc--------H------HHHHHHHHHHHcC--------Ccc----------eEEeccccc
Confidence 0134455667777 79988885 2 4433221122222 122 299999999
Q ss_pred cchhHhHHHHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchh
Q psy2393 321 FYFHILFWPAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQ 399 (576)
Q Consensus 321 ~~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~ 399 (576)
+|||+.+++|+.++. |.+.+++|+|+||++++|+|||||+||+++++|++++|++++++||++++. +++.+++||++
T Consensus 244 iFPHHene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~--~yr~~l~Fs~e 321 (481)
T PRK14534 244 IGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTA--HYRTQLKFTFN 321 (481)
T ss_pred CCCcchhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhC--CCCCCCCCCHH
Confidence 999999999998874 677789999999999999999999999999999999779999999999987 88899999999
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHcCC-CCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHH
Q psy2393 400 SFISCVNSDLIGKYINIASRSSSFIEKYFKG-YLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFI 477 (576)
Q Consensus 400 ~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~-~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~ 477 (576)
.+.+..+ .+.++.+.+.++...+.. ..+ ..... . + .........+.+.+.+|| ++++++.|+..|+++++..
T Consensus 322 ~l~~a~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~-~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~k~~ 395 (481)
T PRK14534 322 NLKACKI--ARENMLNKLTYFYSSLDQ-FDLNLLNKD-L-E-NIEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDIIKDD 395 (481)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHhhhh-ccccccccc-c-c-cchhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence 8877743 255666655544322211 010 00100 0 1 000011234556788888 6899999999999999888
Q ss_pred HH
Q psy2393 478 NI 479 (576)
Q Consensus 478 n~ 479 (576)
|.
T Consensus 396 n~ 397 (481)
T PRK14534 396 NL 397 (481)
T ss_pred HH
Confidence 86
|
|
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=382.77 Aligned_cols=349 Identities=14% Similarity=0.156 Sum_probs=251.0
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
-++|+|. |||++++||||+|++|.+|+++||++++| ++|.|++|+||||+||+.+|+++|++|++++++|.+.
T Consensus 10 v~~YvCG--pTvY~~~HIGh~r~~V~~Dvl~R~lr~~G-----~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~ 82 (384)
T PRK12418 10 ATMYVCG--ITPYDATHLGHAATYLAFDLVNRVWRDAG-----HDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIAL 82 (384)
T ss_pred eEEEecC--CCCCCCCccchhHHHHHHHHHHHHHHHcC-----CceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3677776 67779999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCc-cccccccCCChhhHHHHHHHHHHHHhcCCcEEecce----eeeecCCCCccccccceeccCCCCCCCCC
Q psy2393 92 RKKYLDGFYI-KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKI----NQFFDPIKNIFLPDRYIKGECPICNAKDQ 166 (576)
Q Consensus 92 ~~~~l~~lgi-~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~----~~~~~~~~~~~l~~~~v~~~~p~c~~~~~ 166 (576)
|.+++++||| .+|.++++++ +.+.+++++++|. ++|++|++.. .+||+...-. .
T Consensus 83 f~~d~~~Lni~~~~~~~raTe--~i~~~~~~i~~L~-~kG~aY~~~~~~~~~VYFdv~~~~------------------~ 141 (384)
T PRK12418 83 FREDMEALRVLPPRDYVGAVE--SIPEVVELVEKLL-ASGAAYVVDDEEYPDVYFSVDATP------------------Q 141 (384)
T ss_pred HHHHHHHhCCCCCCccccCCC--CHHHHHHHHHHHH-HCCCEEEeCCCCCccEEEecCchh------------------h
Confidence 9999999998 8899999985 6999999999999 9999999998 7999865421 2
Q ss_pred CCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCC
Q psy2393 167 YGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFND 246 (576)
Q Consensus 167 ~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d 246 (576)
||... ++ +.+++......++..+-...+.+.--|-| | .. .. .+-
T Consensus 142 YG~ls---~~--~~~~~~~~~~~~~~~~~~~~K~~p~DFaL-----------W-------K~--------~~---~~~-- 185 (384)
T PRK12418 142 FGYES---GY--DRATMLELFAERGGDPDRPGKRDPLDALL-----------W-------RA--------AR---PGE-- 185 (384)
T ss_pred ccccc---CC--CHHHHHhhhcccccCcccccCCCccccee-----------e-------cc--------CC---CCC--
Confidence 33221 00 00000000000000000000000001111 1 00 00 011
Q ss_pred cccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHh
Q psy2393 247 WDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 247 w~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~ 326 (576)
++.+. .||...|+ | ++.+..-..+..| ..++ ||.+|.|++|+|+.
T Consensus 186 --~~w~s-pwG~GRPG--------W------HiECsam~~~~lg--------~~~D----------IH~GG~DL~FPHHe 230 (384)
T PRK12418 186 --PSWPS-PFGPGRPG--------W------HIECSAIALNRLG--------SGFD----------IQGGGSDLIFPHHE 230 (384)
T ss_pred --CcccC-CCCCCCCh--------h------HHHHHHHHHHHcC--------CCcc----------cccCccccccchhH
Confidence 12233 57766664 2 3333222222233 2233 99999999999999
Q ss_pred HHHHHHHhc-CC-CCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhh
Q psy2393 327 FWPAILKFS-GR-KLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISC 404 (576)
Q Consensus 327 ~~~a~l~~~-~~-~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~ 404 (576)
++.|+.+++ |. +.++.|+|.|+|..+|+|||||+||+|++.++++.|+.++++|||+++. +++.+++|+++.+.+.
T Consensus 231 neiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~--~yr~~l~fs~e~l~~a 308 (384)
T PRK12418 231 FSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAG--HYRADREWTDAVLAEA 308 (384)
T ss_pred hHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEecc--CCCCCcccCHHHHHHH
Confidence 999988875 44 4557888889999999999999999999999987678888999999865 7889999999987665
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 405 VNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 405 ~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
. ..+.++.+++.+. . . . .+..+.+.+.+|+ ++++++.|+..|+++++.+|.|...
T Consensus 309 ~--~~l~r~~~~~~~~--------~---------~-~----~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~ 364 (384)
T PRK12418 309 E--ARLARWRAAAALP--------A---------G-P----DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGD 364 (384)
T ss_pred H--HHHHHHHHHHhcc--------c---------c-c----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCC
Confidence 3 2355565554321 0 0 1 1233457788888 6899999999999999999999866
Q ss_pred cC
Q psy2393 484 NK 485 (576)
Q Consensus 484 ~k 485 (576)
.+
T Consensus 365 ~~ 366 (384)
T PRK12418 365 DA 366 (384)
T ss_pred Cc
Confidence 54
|
|
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=384.49 Aligned_cols=345 Identities=15% Similarity=0.165 Sum_probs=246.7
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
+.-++|||. |||++++||||+|++|.+|+++||+++.| ++|.||+|+||||+||+.+|+++|++|++++++|.
T Consensus 35 ~~v~~YvCG--pTvY~~~HIGhart~V~~Dvl~R~lr~~G-----~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~ 107 (411)
T TIGR03447 35 PEAGMYVCG--ITPYDATHLGHAATYLTFDLVNRVWRDAG-----HRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQI 107 (411)
T ss_pred CcceEEEeC--CccCCCcccccchHHHHHHHHHHHHHhcC-----CceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHH
Confidence 344677777 66669999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcc-ccccccCCChhhHHHHHHHHHHHHhcCCcEEecce----eeeecCCCCccccccceeccCCCCCCC
Q psy2393 90 SNRKKYLDGFYIK-FDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKI----NQFFDPIKNIFLPDRYIKGECPICNAK 164 (576)
Q Consensus 90 ~~~~~~l~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~----~~~~~~~~~~~l~~~~v~~~~p~c~~~ 164 (576)
+.|.+++++|||. +|.++++++ +.+.+++++++|. ++|++|+..+ .+||+...-.
T Consensus 108 ~~f~~d~~~Lni~~~d~~~RaTe--~i~~ii~~i~~L~-~kG~aY~~~~~~~~~VYFdv~~~~----------------- 167 (411)
T TIGR03447 108 DLFREDMEALRVLPPRDYIGAVE--SIDEVIEMVEKLL-AAGAAYEVEGPEYPDVYFSIEATE----------------- 167 (411)
T ss_pred HHHHHHHHHcCCCCCCcccCCCC--CHHHHHHHHHHHH-HCCCEEecCCCCcCcEEEeccchh-----------------
Confidence 9999999999984 899999884 5899999999999 9999999887 6999765421
Q ss_pred CCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCC
Q psy2393 165 DQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKF 244 (576)
Q Consensus 165 ~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (576)
.||..+ ++ +.+++......++..+....+.+.--|.| |.+. ..+-
T Consensus 168 -~YG~Ls---~~--~~~~~~~~~~~~~~~~~~~~K~~p~DFaL------------------WK~~-----------~~~e 212 (411)
T TIGR03447 168 -QFGYES---GY--DRATMLELFAERGGDPDRPGKRDPLDALL------------------WRAA-----------REGE 212 (411)
T ss_pred -cccccc---CC--CHHHHHhhhcccccCcccccCCCCcccce------------------eCCC-----------CCCC
Confidence 233221 00 00000000000000000000000111111 1000 0011
Q ss_pred CCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchh
Q psy2393 245 NDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFH 324 (576)
Q Consensus 245 ~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh 324 (576)
++... .||...|+ | ++.+.....+..| ..++ +|.+|.|++|+|
T Consensus 213 ----~~w~s-pwG~GRPG--------W------HiECsam~~~~lg--------~~~D----------ih~GG~DLifpH 255 (411)
T TIGR03447 213 ----PSWDS-PFGPGRPG--------W------HIECSAIATNRLG--------AGFD----------IQGGGSDLIFPH 255 (411)
T ss_pred ----CCccC-CCCCCCCh--------h------HHHHHHHHHHHcC--------Ccee----------cccCcccccccc
Confidence 12333 57766664 2 3333222222233 2333 999999999999
Q ss_pred HhHHHHHHHhc-CC-CCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHh
Q psy2393 325 ILFWPAILKFS-GR-KLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFI 402 (576)
Q Consensus 325 ~~~~~a~l~~~-~~-~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~ 402 (576)
+.+..|+..++ |. +.++.|+|+|||..+|+|||||+||+|+++++++.|++++++|||+++. +++.+++||.+.+.
T Consensus 256 heneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~--~Yr~pl~fs~e~l~ 333 (411)
T TIGR03447 256 HEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAG--HYRQDRDWTDAVLA 333 (411)
T ss_pred hHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecC--CCCCCCccCHHHHH
Confidence 99999988875 54 5668999999999999999999999999999998789999999999976 89999999999876
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHH
Q psy2393 403 SCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINI 479 (576)
Q Consensus 403 ~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~ 479 (576)
+. ...+.++.+++.++. . . .+..+...+.+|+ ++++++.|+..|+++++..|.
T Consensus 334 ~a--~~~l~rl~~~~~~~~-----------------~-~----~~~~~~~~~~~al~dDln~p~a~~~l~~~~~~~n~ 387 (411)
T TIGR03447 334 EA--EARLARWRAALAATD-----------------A-P----DATDLIARLRQHLANDLDTPAALAAVDNWAAAALS 387 (411)
T ss_pred HH--HHHHHHHHHHHhhcc-----------------c-c----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 65 334556666553220 0 1 1123445666788 689999999999999986665
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=373.74 Aligned_cols=349 Identities=21% Similarity=0.282 Sum_probs=256.4
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
-++|||. |||++..||||+|++|..|++.||++.+| |.|.||.+++|.++||+.+|.+.|.++.+++++|.++
T Consensus 23 V~mYvCG--pTVYd~~HIGhaRt~V~fDvl~R~L~~~G-----y~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~ 95 (464)
T COG0215 23 VKMYVCG--PTVYDYAHIGHARTYVVFDVLRRYLRYLG-----YKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAA 95 (464)
T ss_pred EEEEecC--CccCCccccccCcceehHHHHHHHHHHhC-----CeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3556665 99999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCc-cccccccCCChhhHHHHHHHHHHHHhcCCcEEec-ceeeeecCCCCccccccceeccCCCCCCCCCCCC
Q psy2393 92 RKKYLDGFYI-KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINK-KINQFFDPIKNIFLPDRYIKGECPICNAKDQYGD 169 (576)
Q Consensus 92 ~~~~l~~lgi-~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~-~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~ 169 (576)
|.++++.||| .+|...+.+ +|...+.+++++|. ++|++|.. .+.|+|+..+-. .||.
T Consensus 96 f~~D~~aL~v~~p~~~PraT--e~I~~iI~~I~~Li-ekG~AY~~~~G~VYFdv~~f~------------------~YG~ 154 (464)
T COG0215 96 FFEDMDALNVLPPDIEPRAT--EHIDEIIEFIEKLI-EKGYAYVADDGDVYFDVSKFK------------------DYGK 154 (464)
T ss_pred HHHHHHHhCCCCCcccCcHh--hCHHHHHHHHHHHH-HCCceEEecCCcEEEecccch------------------hhHh
Confidence 9999999999 578888877 79999999999999 99999998 578999766531 1322
Q ss_pred ccccCCCcCCCCccCCCcccCCCCccEEe--eecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCc
Q psy2393 170 FCECCSSIYTPTKLINPYSILSGTKPIIK--SSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDW 247 (576)
Q Consensus 170 ~c~~cg~~~~~~~l~~p~~~~~~~~~~~~--~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw 247 (576)
..- + -..+++ +.|..+... +.+.--|-| | -....|.+-|
T Consensus 155 LS~---~-~~le~l------~~gar~~~~~~Krnp~DFvL-----------W------------------K~sk~gEp~W 195 (464)
T COG0215 155 LSG---R-DSLEEL------QAGARVEVDEEKRNPLDFVL-----------W------------------KAAKPGEPSW 195 (464)
T ss_pred hcC---C-CChhHH------hhccccccccccCCchhhee-----------e------------------ccCCCCCCCC
Confidence 110 0 000000 001111100 000001111 1 0000122223
Q ss_pred ccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhH
Q psy2393 248 DISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILF 327 (576)
Q Consensus 248 ~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~ 327 (576)
++ .||...|+ | ++-+..-.....| +.++ ||.+|.|++|+||.+
T Consensus 196 ----~S-PWG~GRPG--------W------HIECSaM~~~~LG--------~~~D----------IHgGG~DLiFPHHEN 238 (464)
T COG0215 196 ----DS-PWGKGRPG--------W------HIECSAMSTKYLG--------ETFD----------IHGGGSDLIFPHHEN 238 (464)
T ss_pred ----CC-CCCCCCCc--------h------hHHHHHHHHHHhC--------CCcc----------eecCcccccCCCccc
Confidence 33 56666664 2 3322222222233 3444 999999999999999
Q ss_pred HHHHHHhcCC--CCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhh
Q psy2393 328 WPAILKFSGR--KLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCV 405 (576)
Q Consensus 328 ~~a~l~~~~~--~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~ 405 (576)
..|+.++... +..++|+|+|||+++|+|||||+||+++++|++++ |++.+|||+++++ +++.+++||.+.+.+..
T Consensus 239 EiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~-~~p~~lR~~lls~--HYR~pl~fsee~L~~A~ 315 (464)
T COG0215 239 EIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKK-YDPEVLRLFLLSS--HYRSPLDFSEELLEEAK 315 (464)
T ss_pred HHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhh-cCHHHHHHHHHHH--HhCCccccCHHHHHHHH
Confidence 9999988744 34589999999999999999999999999999999 9999999999998 99999999999877664
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhhhc
Q psy2393 406 NSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFFDQN 484 (576)
Q Consensus 406 ~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~~~ 484 (576)
..+.++.+++.++.... +.. . . ..+..+.+.+.++| ++|++..|+..|.++++..|...+..
T Consensus 316 --~~l~rl~~~~~~~~~~~-----~~~------~-~---~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~~ 378 (464)
T COG0215 316 --KALERLYNALRRLRDLA-----GDA------E-L---ADLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEG 378 (464)
T ss_pred --HHHHHHHHHHHHHHhhc-----ccc------c-c---chhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhhhhcc
Confidence 34777777776543111 000 0 0 03445556688888 79999999999999998777655443
|
|
| >PRK14535 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=388.79 Aligned_cols=346 Identities=15% Similarity=0.172 Sum_probs=251.7
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
.++-++.+.|||++.+||||+|++|.+|+++||++++| ++|.||+|+||||+||+.+|++.|+++.+++++|.+.
T Consensus 247 ~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~G-----y~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~ 321 (699)
T PRK14535 247 ENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECG-----YPLTYVRNITDIDDKIIARAAENGETIGELTARFIQA 321 (699)
T ss_pred CceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcC-----CceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33444444599999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEec-ceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 92 RKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINK-KINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~-~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
|.+++++|||.++.++ |...+|...++.++++|. ++|++|++ .+.+|||..+-. .||..
T Consensus 322 F~~d~~~LnI~~p~~~-praTeHI~~ii~lI~~Li-dkG~AYe~~~gsVYFdV~~f~------------------~YG~L 381 (699)
T PRK14535 322 MHEDADALGVLRPDIE-PKATENIPQMIAMIETLI-QNGKAYPAANGDVYYAVREFA------------------AYGQL 381 (699)
T ss_pred HHHHHHHcCCCCCcEe-eCccchHHHHHHHHHHHH-HCCCEEEeCCCCEEEeccccc------------------ccccc
Confidence 9999999999887764 445599999999999999 99999987 568999877531 24422
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEe--eecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIK--SSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWD 248 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~--~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~ 248 (576)
+- . +.+++ +.|..++.. ....--|.| | .+. ..|-.-|
T Consensus 382 S~---~--~~~~l------~~g~rve~d~~Krnp~DFaL-----------W-------K~s-----------k~Gep~W- 420 (699)
T PRK14535 382 SG---K--SLDDL------RAGERVEVDGFKRDPLDFVL-----------W-------KAA-----------KAGEPAW- 420 (699)
T ss_pred cC---C--ChHHh------cCCCccccccccCCccccce-----------e-------ccC-----------CCCCCCc-
Confidence 21 0 01111 112222110 111111112 1 100 0121223
Q ss_pred cccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHH
Q psy2393 249 ISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFW 328 (576)
Q Consensus 249 isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~ 328 (576)
.. .||-..|+ | ++.+.....+..| ..++ ||.+|.|++|+||.+.
T Consensus 421 ---~S-PWG~GRPG--------W------HIECSAMs~~~LG--------~~~D----------IHgGG~DLiFPHHENE 464 (699)
T PRK14535 421 ---ES-PWGNGRPG--------W------HIECSAMSENLFG--------DTFD----------IHGGGADLQFPHHENE 464 (699)
T ss_pred ---cC-CCCCCCCc--------h------HHHHHHHHHHHcC--------Ccce----------eECCccccCCCCCccH
Confidence 33 56666664 2 3333222222233 2333 9999999999999999
Q ss_pred HHHHHhc-CCC----------------CCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCC
Q psy2393 329 PAILKFS-GRK----------------LPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKI 391 (576)
Q Consensus 329 ~a~l~~~-~~~----------------~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~ 391 (576)
.|+.+++ |.. ..++|+|+|||+++|+|||||+||+++++++++. ||+|++|||+++. +++
T Consensus 465 iAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~-ygpdalRl~lLss--hYR 541 (699)
T PRK14535 465 IAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQ-YDPEVVRFFILRA--HYR 541 (699)
T ss_pred HHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHh-CCHHHHHHHHHcC--CCC
Confidence 9998774 431 3379999999999999999999999999999999 9999999999986 788
Q ss_pred CCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHH
Q psy2393 392 EDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIV 470 (576)
Q Consensus 392 ~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l 470 (576)
.+++||.+.+.+.. ..+.++.+++.++.. .. ..+...+..+.+.+.+|| ++++++.|+..|
T Consensus 542 spL~fS~e~Le~Ak--~~l~Rl~~~l~~~~~---------~~-------~~~~~~l~~~~~~f~~AL~DDlntp~Ala~L 603 (699)
T PRK14535 542 SPLNYSDAHLDDAK--GALTRLYTTLKNTPA---------AE-------FMLSENVNDYTRRFYAAMNDDFGTVEAVAVL 603 (699)
T ss_pred CCCCcCHHHHHHHH--HHHHHHHHHHHhhhh---------cc-------chhhhhHHHHHHHHHHHHhhccChHHHHHHH
Confidence 99999999776653 235555555433210 00 001123445667888899 689999999999
Q ss_pred HHHHHHHHHh
Q psy2393 471 IEQTNFINIF 480 (576)
Q Consensus 471 ~~~~~~~n~y 480 (576)
+++++..|..
T Consensus 604 ~~lvk~iN~~ 613 (699)
T PRK14535 604 FELAGEVNKT 613 (699)
T ss_pred HHHHHHHHHH
Confidence 9999988875
|
|
| >PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=333.50 Aligned_cols=277 Identities=21% Similarity=0.286 Sum_probs=193.0
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
++|+|. |||+..+||||+|++|..|++.|+++..| ++|.+|.|++|.+++|+.+|++.|+++.+++++|.++|
T Consensus 10 ~~Y~CG--PTVYd~~HiGhaR~~v~~D~l~R~L~~~g-----~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f 82 (300)
T PF01406_consen 10 RMYVCG--PTVYDYAHIGHARTYVFFDVLRRYLEYLG-----YDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEF 82 (300)
T ss_dssp EEEEEE--EBTTS--BHHHHHHHHHHHHHHHHHHHTT------EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred EEEcCC--CCCCCCCCCcceeeeeeHHHHHHHHHHcC-----CeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHH
Confidence 455555 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhcCccc-cccccCCChhhHHHHHHHHHHHHhcCCcEEecc-eeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 93 KKYLDGFYIKF-DNWYSTDSIENIDLVQKIYDTLYNKAKLIINKK-INQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 93 ~~~l~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~-~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
.++|++|||.. +.+.+.+ ++...+.+++++|. ++|++|... +.+||+...-. .||..
T Consensus 83 ~~dm~~Lnv~~p~~~prat--e~i~~ii~~i~~Li-~~G~AY~~~~g~VYFdv~~~~------------------~YG~L 141 (300)
T PF01406_consen 83 FEDMKALNVLPPDHYPRAT--EHIPEIIELIEKLI-DKGHAYESEDGSVYFDVSKFP------------------DYGKL 141 (300)
T ss_dssp HHHHHHTT----SEEEEGG--GGHHHHHHHHHHHH-HTTSEEEETTSEEEE-CCGST------------------TTTTT
T ss_pred HHHHHHcCCCCCccccchh--ccHHHHHHHHHHHH-HCCCeEEcCCCcEEEeecccc------------------ccccc
Confidence 99999999954 7787766 79999999999999 999999999 99999865421 23322
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcc--
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWD-- 248 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~-- 248 (576)
+. . ++ ++.......- .+.. + .+..|+.
T Consensus 142 s~--------------------~------------~~--~~l~~~~~~~-~~~~--------------K--~~p~DFaLW 170 (300)
T PF01406_consen 142 SN--------------------Q------------DL--EDLEAGARVE-VDYE--------------K--RNPRDFALW 170 (300)
T ss_dssp TT---------------------------------SH--HHHHHCHHHT-T-TT--------------S--SSTT-EEEE
T ss_pred cc--------------------c------------ch--hhHHhhhhcc-cccc--------------c--CCCcceeee
Confidence 11 0 11 1111100000 0000 0 0111111
Q ss_pred -------cccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCc
Q psy2393 249 -------ISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIF 321 (576)
Q Consensus 249 -------isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~ 321 (576)
++... .||...|+ | ++.+.....+..| ..++ ||.+|.|++
T Consensus 171 K~~~~~e~~w~s-pwG~GRPG--------W------HiECsam~~~~lG--------~~~D----------IH~GG~DL~ 217 (300)
T PF01406_consen 171 KAAKPGEPSWDS-PWGKGRPG--------W------HIECSAMSMKYLG--------DTFD----------IHGGGIDLI 217 (300)
T ss_dssp EE--TTS--B---TTSSEEE---------H------HHHHHHHHHHHHT--------TSEE----------EEEEEGGGT
T ss_pred ecccccCCcccC-CCccCcCc--------e------eeehHHHHHHHcC--------CCce----------EEccccccC
Confidence 22333 57766664 3 4433222222223 2333 999999999
Q ss_pred chhHhHHHHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhh
Q psy2393 322 YFHILFWPAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQS 400 (576)
Q Consensus 322 ~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~ 400 (576)
|+|+.+..|+.+++ |.+..++|+|.|||.++|+|||||+||+++++|++++ |+++++||+++++ +++.+++||++.
T Consensus 218 FPHHENEiAqs~a~~g~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~-~~~~~lR~~~l~~--hYr~~l~~s~~~ 294 (300)
T PF01406_consen 218 FPHHENEIAQSEAATGKPFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKK-YSPDALRLFLLST--HYRKPLNFSEEN 294 (300)
T ss_dssp TTHHHHHHHHHHHHHSS-SEEEEEEE--EEETTCE--TTTT---BHHHHHTT-S-HHHHHHHHHTS---TTS-EEE-HHH
T ss_pred CCCccchHHHHHHhhCchHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhc-CCHHHHHHHHhcC--CCCCccccCHHH
Confidence 99999999998886 6555689999999999999999999999999999999 9999999999998 899999999997
Q ss_pred Hhhh
Q psy2393 401 FISC 404 (576)
Q Consensus 401 ~~~~ 404 (576)
+.+.
T Consensus 295 l~~A 298 (300)
T PF01406_consen 295 LEEA 298 (300)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B. |
| >KOG2007|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=331.49 Aligned_cols=389 Identities=17% Similarity=0.162 Sum_probs=269.7
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHh-hcCCCCCCcceEEecCCCcccHHHHHHHH--HcCCCHHHHHH--
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQC-MQQDNGKSRQVYFICADDAHGAAIMIAAE--KAGMTPKEFIN-- 86 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~-~~G~~~~~~~V~~v~g~D~~G~~i~~~a~--~~g~~~~~~~~-- 86 (576)
.++-.+.+.||++...||||||+||..||+.|+++ +.| |+|.||+|++|.+++|+.+|. +.+..|..+.+
T Consensus 54 ~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfg-----y~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F 128 (586)
T KOG2007|consen 54 NKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFG-----YDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERF 128 (586)
T ss_pred CeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcC-----cceEEEecccchhHHHHHHhhhhhhccchhhHHHHH
Confidence 34444455599999999999999999999999999 999 999999999999999999997 34555544433
Q ss_pred -HHHHHHHHHHhhcCc-cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCC
Q psy2393 87 -NISSNRKKYLDGFYI-KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAK 164 (576)
Q Consensus 87 -~~~~~~~~~l~~lgi-~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~ 164 (576)
.|.++|.++|.+|+| .++...+.+ +|...+..+++++. ++|+.|..++.||||...-.
T Consensus 129 ~~~e~eF~~DM~~LnvLpPtv~tRVS--eyvp~II~fIqkII-dnG~aY~~dGsVYFdv~kf~----------------- 188 (586)
T KOG2007|consen 129 CYYEEEFLQDMAALNVLPPTVQTRVS--EYVPQIIKFIQKII-DNGYAYAVDGSVYFDVDKFP----------------- 188 (586)
T ss_pred HHHHHHHHHHHHHhCCCCCcccchhh--hchHHHHHHHHHHH-hCCceeeeCCcEEEeccccc-----------------
Confidence 577999999999999 667777766 79999999999999 99999999999999865432
Q ss_pred CCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCC
Q psy2393 165 DQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKF 244 (576)
Q Consensus 165 ~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (576)
..||-.. |.. +.+.++- |.....+... .+.+.-|-....|-
T Consensus 189 ~~YgKL~---G~~---~~~~~gE----g~l~ds~KR~-----------------------------p~DFALWKAsK~gE 229 (586)
T KOG2007|consen 189 HSYGKLV---GQR---KNLQEGE----GVLSDSRKRS-----------------------------PADFALWKASKPGE 229 (586)
T ss_pred chhhhhc---Cch---hhcccCc----CccccccCCC-----------------------------hhhhhhhhhcCCCC
Confidence 0111100 100 0000000 0000000000 01111121111233
Q ss_pred CCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchh
Q psy2393 245 NDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFH 324 (576)
Q Consensus 245 ~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh 324 (576)
+-|. . .||...|+ ..|- ++.++.. + .| ..++ ||-+|.|+.|+|
T Consensus 230 P~We----S-PWG~GRPG---WHIE------CSaMas~--~---lG--------~~lD----------IH~GG~DL~FPH 272 (586)
T KOG2007|consen 230 PSWE----S-PWGKGRPG---WHIE------CSAMASA--I---LG--------SQLD----------IHGGGIDLAFPH 272 (586)
T ss_pred CCCC----C-CCCCCCCC---ceee------eHHHHHH--h---hc--------cccc----------eecCcccccCCC
Confidence 3332 2 46655553 1110 1122221 1 12 2333 999999999999
Q ss_pred HhHHHHHHHhcCCC--CCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHh
Q psy2393 325 ILFWPAILKFSGRK--LPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFI 402 (576)
Q Consensus 325 ~~~~~a~l~~~~~~--~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~ 402 (576)
|.+..|..++.-.. .-++++|+|||.++|+|||||++|+||+++++++ |+|++||+++++. .++..++|+...+.
T Consensus 273 HeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~-~sp~qLRl~fl~~--~wr~~ldYs~s~m~ 349 (586)
T KOG2007|consen 273 HENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKK-YSPRQLRLAFLLH--QWRSPLDYSDSTME 349 (586)
T ss_pred cccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHh-cCHHHHHHHHHHH--HhcCcCCchHHHHH
Confidence 99999988876433 3389999999999999999999999999999999 9999999999998 88899999988665
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhh
Q psy2393 403 SCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFF 481 (576)
Q Consensus 403 ~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~ 481 (576)
.. ..+...+.|++.-+..+.+ ...+ .+.+.+.+.+|...+......|+.|+ +++++..++..+.+++..+|.|+
T Consensus 350 ~a--~q~e~~~~~ff~~~~al~~-~~~~--~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i 424 (586)
T KOG2007|consen 350 QA--LQLEKSLNNFFLDVKALLR-GAKP--FEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYI 424 (586)
T ss_pred HH--HHHHHHHHHHHHHHHHHHh-ccch--hhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHH
Confidence 44 3455566666533333322 1111 22343322889999999999999998 89999999999999999999999
Q ss_pred hhcCccccccCcccHHHHHHHHHHHHHHHHHHHH
Q psy2393 482 DQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTI 515 (576)
Q Consensus 482 ~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ 515 (576)
...... .....+.++...+..++++++.
T Consensus 425 ~~~~~~------~~~~~L~~I~~yIt~~l~ifG~ 452 (586)
T KOG2007|consen 425 RESGER------PNSALLKAIASYITKLLKIFGL 452 (586)
T ss_pred HHhccc------cchHHHHHHHHHHHHHHHHhCC
Confidence 876611 1123345555556666666654
|
|
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=357.76 Aligned_cols=335 Identities=16% Similarity=0.206 Sum_probs=257.1
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
.+++++|..++|||||++||||+|+++++|+++|++++.| ++|.++.|+||+|+++...+...+..++++++.+.
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G-----~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~ 183 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAG-----YDVTREYYVNDAGTQIGMLIASLELLWRKAVDISL 183 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcC-----CcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999 99999999999999999999998888999999999
Q ss_pred HHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEE-ecceeeeecCCCCccccccceeccCCCCCCCCCCC
Q psy2393 90 SNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLII-NKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYG 168 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy-~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g 168 (576)
+.|+++|++|||.+|.++++++..+...+++++++|. ++|++| +.++.+|++..
T Consensus 184 ~~~~~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~-~~G~~y~~~~Ga~~~~~~------------------------ 238 (507)
T PRK01611 184 DEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLK-EKGLLYVESDGALWVRLT------------------------ 238 (507)
T ss_pred HHHHHHHHHcCCeeeEEeecCcchhcchHHHHHHHHH-HCCCEEEeeCCcEEEEch------------------------
Confidence 9999999999999999988887777889999999999 999999 77666665311
Q ss_pred CccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcc
Q psy2393 169 DFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWD 248 (576)
Q Consensus 169 ~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~ 248 (576)
.+ +...|..
T Consensus 239 ------------------------------------------~~-----------------------------~~~~~~v 247 (507)
T PRK01611 239 ------------------------------------------EF-----------------------------GDDKDRV 247 (507)
T ss_pred ------------------------------------------hh-----------------------------CCCCCeE
Confidence 00 0001222
Q ss_pred cccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHH
Q psy2393 249 ISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFW 328 (576)
Q Consensus 249 isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~ 328 (576)
+-|+. |.+ +|.- ..++|. .. .+.. ..++|++.|.||......++
T Consensus 248 l~ksd---G~~--------~Y~t--~Dia~~------~~------------k~~~-----~d~~i~V~g~~q~~hf~~~~ 291 (507)
T PRK01611 248 LIKSD---GTY--------TYFT--RDIAYH------LY------------KFER-----FDRVIYVVGADHHGHFKRLK 291 (507)
T ss_pred EEECC---CCc--------cchH--HHHHHH------HH------------HHhh-----cCEEEEEECCChHHHHHHHH
Confidence 22322 221 1100 001111 00 0010 12458899999973333333
Q ss_pred HHHHHhcCCCCCc-EEeee---ccEEe-CCccccccCCCccChhHHhhcCCCh----------------hHHHHHHHhhC
Q psy2393 329 PAILKFSGRKLPN-NIFVH---GFMTI-NGKKMSKSNKIGISPLYYLKIGMNP----------------EWLRYYIASKL 387 (576)
Q Consensus 329 ~a~l~~~~~~~p~-~~~~~---g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~----------------d~lR~~l~~~~ 387 (576)
+.+..+|...+. .++.| |+|.. +|+|||||+||+|+++|++++++|. |++||++++.
T Consensus 292 -~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~- 369 (507)
T PRK01611 292 -AALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSR- 369 (507)
T ss_pred -HHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhc-
Confidence 467888876443 43444 77777 7889999999999999999987888 9999999987
Q ss_pred CCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCC---Ccc-cCChHHHHHHHHHHHHHHHHHHHhhhH
Q psy2393 388 NNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLN---MKW-VKDNDTFLSKLRVVSSSIQKYYENRNF 463 (576)
Q Consensus 388 ~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~---~~~-~~d~~~l~~~l~~~~~~v~~a~~~~~~ 463 (576)
....+++|+++.+.+..... ..++++++.|+++++++....... ..+ .+.+.||+..|..+++.+.++++++++
T Consensus 370 -~~~~~~~Fd~~~~~~~~~~~-~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p 447 (507)
T PRK01611 370 -SRDKDLDFDLDLALSFEGNN-PPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAAEELEP 447 (507)
T ss_pred -CCCCCCccCHHHHHhhcCCC-cHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34578999999987765333 348899999999999875321111 112 122389999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q psy2393 464 NKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 464 ~~~~~~l~~~~~~~n~y~~~~k 485 (576)
+.+++++++|++.+|.||+.++
T Consensus 448 ~~l~~yl~~la~~f~~fY~~~~ 469 (507)
T PRK01611 448 HRIANYLYELAGAFHSFYNRVL 469 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999998765
|
|
| >KOG0437|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=319.09 Aligned_cols=489 Identities=21% Similarity=0.330 Sum_probs=337.6
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-------CC--
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-------GM-- 79 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-------g~-- 79 (576)
+++++|+++.|.||.||.||+||+.+..-.|+.+-|.|++| ++|+|.+|+.|.|+||...|+++ |.
T Consensus 41 ~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~G-----k~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~pp 115 (1080)
T KOG0437|consen 41 KSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQG-----KNVLFPFGFHCTGMPIKASADKLKREIELFGCPP 115 (1080)
T ss_pred cccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcC-----ceEEeecccccCCCccHHhHHHHHHHHHHhCCCC
Confidence 46789999999999999999999999999999999999999 99999999999999999888752 11
Q ss_pred ------------------------------------------------------------CHHHHHHHHHHHHHHHHhhc
Q psy2393 80 ------------------------------------------------------------TPKEFINNISSNRKKYLDGF 99 (576)
Q Consensus 80 ------------------------------------------------------------~~~~~~~~~~~~~~~~l~~l 99 (576)
+|..|...+...-.++|+++
T Consensus 116 df~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~ 195 (1080)
T KOG0437|consen 116 DFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRF 195 (1080)
T ss_pred CCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHh
Confidence 12234445555667889998
Q ss_pred Ccccc---ccccCC-ChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccccccee---c----------------
Q psy2393 100 YIKFD---NWYSTD-SIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIK---G---------------- 156 (576)
Q Consensus 100 gi~~d---~~~~t~-~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~---~---------------- 156 (576)
|...| .|+.|+ +|.|..+|+|-|.+|. +.|.|..++.-.-|||.++....|+.-. |
T Consensus 196 gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~-~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~ 274 (1080)
T KOG0437|consen 196 GLGIDWRRSFITTDVNPYYDSFVRWQFNKLK-EAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEP 274 (1080)
T ss_pred CCCcceeeeeeecccchhHHHHHHHHHHHHH-hcCCcccCcceeeecCCCCCcccccccccCCCCCcceEEEEEEEeccc
Confidence 87544 566664 7889999999999999 9999999999999999999888776321 0
Q ss_pred ----------------------------c-C---C--------CCCCC--------------------------------
Q psy2393 157 ----------------------------E-C---P--------ICNAK-------------------------------- 164 (576)
Q Consensus 157 ----------------------------~-~---p--------~c~~~-------------------------------- 164 (576)
+ | | .|...
T Consensus 275 ~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~ 354 (1080)
T KOG0437|consen 275 FPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVVSCLVTIT 354 (1080)
T ss_pred chhhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhcchhhccccCCcccceeeec
Confidence 0 1 1 01000
Q ss_pred --------------------------------------------C---------------------------------CC
Q psy2393 165 --------------------------------------------D---------------------------------QY 167 (576)
Q Consensus 165 --------------------------------------------~---------------------------------~~ 167 (576)
| .+
T Consensus 355 G~~~iGa~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~f 434 (1080)
T KOG0437|consen 355 GYDLIGAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGF 434 (1080)
T ss_pred chhhcCCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeecccc
Confidence 0 01
Q ss_pred CCccc--cCCCc-----------------------CCCC--------------------ccC------------CCcccC
Q psy2393 168 GDFCE--CCSSI-----------------------YTPT--------------------KLI------------NPYSIL 190 (576)
Q Consensus 168 g~~c~--~cg~~-----------------------~~~~--------------------~l~------------~p~~~~ 190 (576)
|+.|. .|... ++.. +|+ .++-.|
T Consensus 435 Gdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSR 514 (1080)
T KOG0437|consen 435 GDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSR 514 (1080)
T ss_pred chhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEEEeccccccHHhhhhHHHHHHHhcccceeecCcchhhhcc
Confidence 21110 00000 0000 011 147789
Q ss_pred CCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEE
Q psy2393 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFY 269 (576)
Q Consensus 191 ~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~ 269 (576)
+|..+++...+|||++.+.+.|+....+. ++.. .+.++.++-+..-|. .+..|..||+- .-|+.+|.++...+.
T Consensus 515 SGdeCiVAL~DQWYldYgE~eWKk~a~~c-Le~l~~f~dEtR~~fE~tLd---WL~~wacsRsy-GLGTrlPWD~qyLvE 589 (1080)
T KOG0437|consen 515 SGDECIVALCDQWYLDYGEAEWKKQAKEC-LENLNTFSDETRNGFEDTLD---WLGQWACSRSY-GLGTRLPWDEQYLVE 589 (1080)
T ss_pred CCCceEEEeccchhhhcCcHHHHHHHHHH-HhhhhccCHHHHHHHHHHHH---HHHhhhhhccc-cCCCCCCCcHHHHHH
Confidence 99999999999999999888899999999 6664 678888876655554 55689999997 899999987544333
Q ss_pred EEeeccc--chhhhcch-----hhhhCC---CC---------------Ccccc------------cccccccccCCCcce
Q psy2393 270 VWLDAPI--GYLASLKN-----FFEKGG---PK---------------KKYNE------------LRNFDEFISSPNTEQ 312 (576)
Q Consensus 270 vw~d~~~--~~~~~~~~-----~~~~~g---~~---------------~~~~~------------~~~~~~~w~~~~~~~ 312 (576)
..-|+.+ +|.+...- +-+..| .. ..|+. ..+|+.|+|-+
T Consensus 590 SLSDSTIYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiD---- 665 (1080)
T KOG0437|consen 590 SLSDSTIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFYPID---- 665 (1080)
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCcccCCCChhhcCHHHHHHhhccCCCCcCCCccHHHHHHHHHhhhccccee----
Confidence 3333321 11110000 000011 10 00110 03555555543
Q ss_pred EEEeeecCcchhHhHH----HHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCC
Q psy2393 313 YHFIGKDIFYFHILFW----PAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLN 388 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~----~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~ 388 (576)
+.+.|+|++..|..++ +|++- ....|+.+-++||+++|++|||||.||+.|+++.+++ +|+|+.|+.|+.. +
T Consensus 666 lrvsGKDLi~NHLtfflynHvAl~~--~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieK-Fgad~tRlalAda-G 741 (1080)
T KOG0437|consen 666 LRVSGKDLIPNHLTFFLYNHVALFP--EKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEK-FGADGTRLALADA-G 741 (1080)
T ss_pred eeeccccccccceeEeeeehhhhcc--cccCccceeeCceEEecchhhccccCCeeeHHHHHHH-hCccceeeeeecc-c
Confidence 8899999988775443 22222 3467899999999999999999999999999999999 9999999999986 5
Q ss_pred CCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC-cc--cCChHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy2393 389 NKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM-KW--VKDNDTFLSKLRVVSSSIQKYYENRNFNK 465 (576)
Q Consensus 389 ~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~-~~--~~d~~~l~~~l~~~~~~v~~a~~~~~~~~ 465 (576)
++..|.+|....... .+-++.+.+.-+..++...- .+.. .. -.| +-+.+.++.+++...++++...|..
T Consensus 742 D~veDANF~ea~AnA-----aILRLyt~~ew~eEm~~~~s--~LrtGp~~~FaD-rvf~nemN~~i~~t~~aye~~~fk~ 813 (1080)
T KOG0437|consen 742 DGVEDANFVEANANA-----AILRLYTYVEWIEEMCENRS--SLRTGPASTFAD-RVFENEMNALIAKTERAYEDTLFKD 813 (1080)
T ss_pred CCcccchhHHhcccH-----HHHHHHHHHHHHHHHHhhHH--hhccCchhhHHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 788888887663222 23345555555555543221 1111 11 125 8889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc
Q psy2393 466 VLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP 536 (576)
Q Consensus 466 ~~~~l~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~ 536 (576)
|+.+-+-=...+..+|...-- + .-. + ..+...+.+-..||+||.||+||.||+.++-++
T Consensus 814 aLK~Gfyd~qaArD~Yrel~g-----~-~mh---~---dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~ 872 (1080)
T KOG0437|consen 814 ALKYGFYDLQAARDMYRELCG-----E-GMH---R---DLVFRFIETQTLLLAPICPHLAEYIWRTVLKKN 872 (1080)
T ss_pred HHHhhhHHHHHHHHHHHHHhc-----c-ccc---H---HHHHHHHHHHHHHHhccchHHHHHHHHHhccCC
Confidence 998765544555555544221 0 011 1 122246677888999999999999999987653
|
|
| >cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=290.69 Aligned_cols=193 Identities=24% Similarity=0.267 Sum_probs=163.0
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
++.++|+|. |||+|++||||+|+++.+|+++||+|++| ++|.|++|+||||+||+.+|++.|++|+++++++.
T Consensus 19 ~~~~~y~~g--pt~y~~~HiGH~r~~v~~Dvl~R~lr~~G-----~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~ 91 (213)
T cd00672 19 GLVTMYVCG--PTVYDYAHIGHARTYVVFDVLRRYLEDLG-----YKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYT 91 (213)
T ss_pred CCceEEEeC--CccCCCcccccchhHHHHHHHHHHHHhcC-----CeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 555777777 66669999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccc-cccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCC
Q psy2393 90 SNRKKYLDGFYIKF-DNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYG 168 (576)
Q Consensus 90 ~~~~~~l~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g 168 (576)
+.|++++++|||++ |.|++| |. .
T Consensus 92 ~~f~~~~~~l~i~~~d~~~rt------------------------------Wh-~------------------------- 115 (213)
T cd00672 92 KEFFEDMKALNVLPPDVVPRV------------------------------WH-I------------------------- 115 (213)
T ss_pred HHHHHHHHHcCCCCCCcceee------------------------------hh-H-------------------------
Confidence 99999999999998 899888 11 0
Q ss_pred CccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcc
Q psy2393 169 DFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWD 248 (576)
Q Consensus 169 ~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~ 248 (576)
.| +.. ..++
T Consensus 116 -ec--------------------------------------~am---~~~~----------------------------- 124 (213)
T cd00672 116 -EC--------------------------------------SAM---AMKY----------------------------- 124 (213)
T ss_pred -HH--------------------------------------HHH---HHHH-----------------------------
Confidence 01 111 0011
Q ss_pred cccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHH
Q psy2393 249 ISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFW 328 (576)
Q Consensus 249 isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~ 328 (576)
.|-+ ++ +|.+|.|++|+|+.++
T Consensus 125 -------lg~~-----------------------------------------~d----------ih~~G~Dl~fpH~~~~ 146 (213)
T cd00672 125 -------LGET-----------------------------------------FD----------IHGGGVDLIFPHHENE 146 (213)
T ss_pred -------cCCC-----------------------------------------cc----------EEeecCCCCcChHHHH
Confidence 1211 11 9999999999999999
Q ss_pred HHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccc
Q psy2393 329 PAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFN 397 (576)
Q Consensus 329 ~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs 397 (576)
.++..+. |.+.++.+++.|+|.++|+|||||+||+|+++|+++. +|+|++|||+++. .++++++|+
T Consensus 147 ~a~~~a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~-~~~da~R~~~l~~--~~~~~l~f~ 213 (213)
T cd00672 147 IAQSEAATGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKK-YDPEVLRLALLSS--HYRSPLDFS 213 (213)
T ss_pred HHHHHHHhCCCCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHH-cCHHHHHHHHHhC--CcCCCCCCC
Confidence 9887774 5555578888899999999999999999999999999 9999999999987 566777775
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >TIGR00456 argS arginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=324.44 Aligned_cols=334 Identities=17% Similarity=0.172 Sum_probs=253.6
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH---cC--------C
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK---AG--------M 79 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~---~g--------~ 79 (576)
+++++|..+.|||+|++||||+|+++++|+++|++++.| ++|.....++|.|.++...+.. .+ .
T Consensus 111 ~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g-----~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~ 185 (566)
T TIGR00456 111 NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLG-----YDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVK 185 (566)
T ss_pred CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCC-----CCeeEEeeecchHHHHHHHHHHHHHhCCccccCccc
Confidence 568999999999999999999999999999999999999 9999999999998876654421 00 0
Q ss_pred -------------------------------------CH------HHHHHHHHHHHHHHHhhcCccccccccCCChhhHH
Q psy2393 80 -------------------------------------TP------KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENID 116 (576)
Q Consensus 80 -------------------------------------~~------~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~ 116 (576)
++ +..++...+.+++++++|||.+|.+++..+..+..
T Consensus 186 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~ 265 (566)
T TIGR00456 186 KPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNG 265 (566)
T ss_pred CChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccc
Confidence 01 12355678899999999999999998777667788
Q ss_pred HHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccE
Q psy2393 117 LVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPI 196 (576)
Q Consensus 117 ~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~ 196 (576)
.+..++..|. ++|++|++ +..|.+..
T Consensus 266 ~~~~v~~~L~-~~g~~~~~-Ga~~~~~~---------------------------------------------------- 291 (566)
T TIGR00456 266 MVPKVLEDLK-EKGLVVED-GALWLDLT---------------------------------------------------- 291 (566)
T ss_pred cHHHHHHHHH-HCCCEEEc-CCEEEEcc----------------------------------------------------
Confidence 8999999999 99999976 66655210
Q ss_pred EeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCC-CCcccccCCCCCCeecCCCCCcEEEEEeecc
Q psy2393 197 IKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKF-NDWDISRDAPYFGIKIPNTLEKYFYVWLDAP 275 (576)
Q Consensus 197 ~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~ 275 (576)
.+ ++. .|..|-|+. |. .+|.--|
T Consensus 292 --------------~~-----------------------------~d~~~~~vl~ksD---Gt--------~~Y~t~D-- 315 (566)
T TIGR00456 292 --------------LF-----------------------------GDKDKDRVLQKSD---GT--------YLYLTRD-- 315 (566)
T ss_pred --------------cc-----------------------------cCCCCCeEEEECC---CC--------ceechhh--
Confidence 00 000 122233333 22 2332111
Q ss_pred cchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEeCCcc
Q psy2393 276 IGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKK 355 (576)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~K 355 (576)
++|.. .+ +.. ...++|++.|.||..+...++ +.++++|++.|..+.||+|.+++|.|
T Consensus 316 iA~~~------~k------------~~~----~~d~iI~V~g~~q~~h~~~v~-~~l~~lG~~~~~~l~h~~~~~V~~~k 372 (566)
T TIGR00456 316 IAYHL------DK------------LER----GFDKMIYVWGSDHHLHIAQFF-AILEKLGFYKKKELIHLNFGMVPLGS 372 (566)
T ss_pred HHHHH------HH------------Hhc----CCCEEEEEecCcHHHHHHHHH-HHHHHcCCCCCCceEEEEEEEEECCC
Confidence 11111 00 000 113569999999974434443 56889998888899999999999999
Q ss_pred ccccCCCccChh-----------------------HHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHH
Q psy2393 356 MSKSNKIGISPL-----------------------YYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGK 412 (576)
Q Consensus 356 MSKS~gn~i~~~-----------------------dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~ 412 (576)
||||+||+|+++ ++++. +|.|++||++++..+ ..|++||++.+.+. +++..++
T Consensus 373 mSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~-vg~dAvRy~~L~~~~--~~d~~Fd~d~~~~~-~~n~~~y 448 (566)
T TIGR00456 373 MKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADA-VGIGAVRYFDLSQNR--ETHYVFDWDAMLSF-EGNTAPY 448 (566)
T ss_pred CCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHH-hcccceeeHHhhcCC--CCCceecHHHHhcc-CCCCchh
Confidence 999999999998 77777 999999999999853 47899999987776 6888999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCC-----cc-cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCc
Q psy2393 413 YINIASRSSSFIEKYFKGYLNM-----KW-VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKP 486 (576)
Q Consensus 413 ~~n~~~R~~~~~~~~~~~~~~~-----~~-~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~ 486 (576)
++|+++|+++++++...+..+. .+ .+++..|+..+..+++.+.+++++++++.+++++++++..+|+||+.++.
T Consensus 449 iqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~~V 528 (566)
T TIGR00456 449 IQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKACPV 528 (566)
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999874322211 11 12227799999999999999999999999999999999999999998854
|
This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. |
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=311.33 Aligned_cols=341 Identities=17% Similarity=0.167 Sum_probs=257.8
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH--------c---
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK--------A--- 77 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~--------~--- 77 (576)
..+++++|....|+|+||+||||+|+.|++|+++|.++..| |+|.....++|.|..+...+.. .
T Consensus 114 ~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~G-----y~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~ 188 (577)
T COG0018 114 GKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLG-----YDVTRENYVNDWGTQIGMLALSYEKRGREALGLT 188 (577)
T ss_pred CCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcC-----CCeeEEeeECcHHHHHHHHHHHHHHhccccccCC
Confidence 35689999999999999999999999999999999999999 9999999999998877643310 0
Q ss_pred --------------------CCC-----------------H-----HHHHHHHHHHHHHHHhhcCccccccccCCChhhH
Q psy2393 78 --------------------GMT-----------------P-----KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENI 115 (576)
Q Consensus 78 --------------------g~~-----------------~-----~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~ 115 (576)
... . +.+++.....+++++.+|||++|.|+..++..+.
T Consensus 189 ~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~ 268 (577)
T COG0018 189 PEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYN 268 (577)
T ss_pred CCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhc
Confidence 001 0 0156677889999999999999999988887888
Q ss_pred HHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCcc
Q psy2393 116 DLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKP 195 (576)
Q Consensus 116 ~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~ 195 (576)
..+..++..|. ++|++|+.++..+.
T Consensus 269 ~~~~~vv~~L~-~~~~~~e~~GA~~v------------------------------------------------------ 293 (577)
T COG0018 269 GKVEKVVEDLE-EKGLLYEDDGALVV------------------------------------------------------ 293 (577)
T ss_pred ccHHHHHHHHH-hcCCEeeeCCeEEE------------------------------------------------------
Confidence 89999999999 99999996544322
Q ss_pred EEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecc
Q psy2393 196 IIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAP 275 (576)
Q Consensus 196 ~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~ 275 (576)
++ .++. +. +..++..|.|+. |.++|.--|
T Consensus 294 ----------dl--~~~~----~~----------------------gd~~~~vl~KSD-----------Gt~lY~t~D-- 322 (577)
T COG0018 294 ----------DL--LKFK----KF----------------------GDDKDRVLQKSD-----------GTYLYFTRD-- 322 (577)
T ss_pred ----------eh--hhhh----hc----------------------CCCCCeEEEEcC-----------CCeeeehhH--
Confidence 22 2211 11 233455566655 334443322
Q ss_pred cchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCCc-EEeee--ccEEe-
Q psy2393 276 IGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPN-NIFVH--GFMTI- 351 (576)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p~-~~~~~--g~v~~- 351 (576)
++|. ..+. . ....++|+|+|.||.-+...++. .+..+|+..++ .++|+ |++..
T Consensus 323 IAy~------~~K~------------~----~~~d~~IyV~gadq~~~~~ql~~-~l~~~g~~~~~~~~~h~~~~l~~~~ 379 (577)
T COG0018 323 IAYH------LYKF------------E----RGFDKLIYVLGADQHGHFKQLKA-VLELLGYGPDKEVLLHQGVGLVRGG 379 (577)
T ss_pred HHHH------HHHH------------h----cCCCEEEEEeCCcchhHHHHHHH-HHHHhcCCCccceEEEEEEeeeECC
Confidence 1121 1110 0 11235699999999855555554 46677777664 33333 44444
Q ss_pred CCccccccCCCccChhHHhhcCCC----------------------hhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHH
Q psy2393 352 NGKKMSKSNKIGISPLYYLKIGMN----------------------PEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDL 409 (576)
Q Consensus 352 ~g~KMSKS~gn~i~~~dll~~g~g----------------------~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~ 409 (576)
+|.||||+.|++|+++|+++. .+ .||+||++++.++ ..+++|+|+.+++... +.
T Consensus 380 ~g~kmStR~G~~vtl~dllde-~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~--~~~~~Fd~d~~lsfeg-Nt 455 (577)
T COG0018 380 EGVKMSTRAGNVVTLDDLLDE-AGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSR--DKDYVFDWDKALSFEG-NT 455 (577)
T ss_pred CCccccccCCceEEHHHHHHH-HHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCC--CCCcEeeHHHHHhccC-CC
Confidence 677999999999999999998 77 9999999999844 4788999999998875 78
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC------cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q psy2393 410 IGKYINIASRSSSFIEKYFKGYLNM------KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482 (576)
Q Consensus 410 ~~~~~n~~~R~~~~~~~~~~~~~~~------~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~ 482 (576)
..+++++++|+++++++......+. .+.. +...|+.+|..+++.+.++++++++|.++.|+++++..||+||+
T Consensus 456 ~pYvQYA~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~ 535 (577)
T COG0018 456 APYVQYAHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYN 535 (577)
T ss_pred chhHHHHHHHHHHHHHhccccccccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999864322221 1221 12889999999999999999999999999999999999999999
Q ss_pred hcCcc
Q psy2393 483 QNKPW 487 (576)
Q Consensus 483 ~~k~~ 487 (576)
.++..
T Consensus 536 ~~~Vl 540 (577)
T COG0018 536 ACPVL 540 (577)
T ss_pred hCCcC
Confidence 99854
|
|
| >cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=293.33 Aligned_cols=270 Identities=21% Similarity=0.280 Sum_probs=194.4
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcc------------------cHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH------------------GAAIMI 72 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~------------------G~~i~~ 72 (576)
+.+++|++|+ ||||.+||||++.++.+|+++|++|++| ++|.|++|+|+| |.|+..
T Consensus 18 ~~~~~v~tgi-~psG~~HIG~~~e~i~~D~i~R~lr~~G-----~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ 91 (353)
T cd00674 18 KEKYVVASGI-SPSGHIHIGNFREVITADLVARALRDLG-----FEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSS 91 (353)
T ss_pred CCeEEEecCC-CCCCCcccCccHHHHHHHHHHHHHHHcC-----CCEEEEEEEcCCCcccccccchhhHHHHhcCccchh
Confidence 3567777777 5999999999999999999999999999 999999999999 899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccccc
Q psy2393 73 AAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDR 152 (576)
Q Consensus 73 ~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~ 152 (576)
.+++.|+++ ++++++.+.+++.|+.|||++|.+.+|.........+.++..|. +++.|..--.+.-=-+..++++|
T Consensus 92 ip~p~g~~~-~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~-~~~~I~~i~~~~~~~~~~~~~~P-- 167 (353)
T cd00674 92 VPDPFGCCE-SYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALE-KRDEIMAILNEYRGRELQETWYP-- 167 (353)
T ss_pred chhhcCCCH-HHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHH-HCChHHHHHHHhcCCccCCCcee--
Confidence 999999988 99999999999999999999997777777777789999999999 99987532111100112223323
Q ss_pred ceeccCCCCCCCCCCCCccccCCCcCCCCc-c------CCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCC
Q psy2393 153 YIKGECPICNAKDQYGDFCECCSSIYTPTK-L------INPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKR 225 (576)
Q Consensus 153 ~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~-l------~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~ 225 (576)
+...|++||+...+.. . +...| .||+..+......- -||
T Consensus 168 --------------~~p~c~~cg~~~~~v~~~d~~~~~v~y~c-~cG~~g~~~~~~g~-~KL------------------ 213 (353)
T cd00674 168 --------------FMPYCEKCGKDTTTVEAYDAKAGTVTYKC-ECGHEETVDIRTGR-GKL------------------ 213 (353)
T ss_pred --------------eeeecCCcCcceeEEEEEeCCCCeEEEEc-CCCCEEEEeecCCC-ccc------------------
Confidence 5677888885422110 1 12244 47765553222100 022
Q ss_pred CChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccc
Q psy2393 226 LQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305 (576)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w 305 (576)
.|-+ .|+-. |. ++ | .
T Consensus 214 --------------------~Wr~-----dW~~r-----------W~-----~l----------~--------V------ 228 (353)
T cd00674 214 --------------------TWRV-----DWPMR-----------WA-----IL----------G--------V------ 228 (353)
T ss_pred --------------------CCCC-----Cchhh-----------hh-----hc----------C--------C------
Confidence 1211 12111 10 00 0 0
Q ss_pred cCCCcceEEEeeecCcch---hHhHHHHHHH-hcCCCCCcEEeeeccEEeCCc-cccccCCCccChhHHhhcCCChhHHH
Q psy2393 306 SSPNTEQYHFIGKDIFYF---HILFWPAILK-FSGRKLPNNIFVHGFMTINGK-KMSKSNKIGISPLYYLKIGMNPEWLR 380 (576)
Q Consensus 306 ~~~~~~~i~~~G~D~~~f---h~~~~~a~l~-~~~~~~p~~~~~~g~v~~~g~-KMSKS~gn~i~~~dll~~g~g~d~lR 380 (576)
.+.+.|+||... +.... +++. .+|.+.| ..+.||||+++|+ |||||+||+|+++|+++. +++|++|
T Consensus 229 ------d~E~~GkDh~~~ggs~~~~~-~i~~~ilg~~~P-~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~~-~~~dalR 299 (353)
T cd00674 229 ------DFEPFGKDHASAGGSYDTGK-EIAREIFGGEPP-VPVMYEFIGLKGGGKMSSSKGNVITPSDWLEV-APPEVLR 299 (353)
T ss_pred ------CEEeeCccccccccHHHHHH-HHHHHHhCCCCC-eEEEeeeEEeCCCCccCCCCCCcCCHHHHHHH-hChHHHH
Confidence 166789999754 32222 2455 7787777 4488999999766 999999999999999999 9999999
Q ss_pred HHHHhhCCCCCCCcccchh
Q psy2393 381 YYIASKLNNKIEDIDFNSQ 399 (576)
Q Consensus 381 ~~l~~~~~~~~~d~~fs~~ 399 (576)
|++++.. ....+++|+++
T Consensus 300 ~~~l~~~-~~~~~i~Fd~~ 317 (353)
T cd00674 300 YLYARRK-NPEKHIGFDLD 317 (353)
T ss_pred HHHHhCC-CCCCCCCcChh
Confidence 9999874 34577888875
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=299.29 Aligned_cols=336 Identities=12% Similarity=0.087 Sum_probs=245.8
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH---cCC-------
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK---AGM------- 79 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~---~g~------- 79 (576)
.+++++|....|+|+|++||||+|+.+++|+++|.++..| |+|.....++|.|.++...+.. .|.
T Consensus 111 ~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G-----~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~ 185 (562)
T PRK12451 111 CEKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCG-----YEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKED 185 (562)
T ss_pred CCCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCC-----CCeEEEeeecCchHHHHHHHHHHHHhCCccccccC
Confidence 3578999999999999999999999999999999999999 9999999999999977654421 111
Q ss_pred ------------------------------------C------HHHHHHHHHHHHHHHHhhcCccccccccCCChhhHHH
Q psy2393 80 ------------------------------------T------PKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDL 117 (576)
Q Consensus 80 ------------------------------------~------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~ 117 (576)
+ .+.+++...+.|++++++|||.||.+...+ .|...
T Consensus 186 ~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~es--~~~~~ 263 (562)
T PRK12451 186 PIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQGEA--FYNDL 263 (562)
T ss_pred chHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeecchH--hhhhh
Confidence 0 112345567789999999999999554433 56777
Q ss_pred HHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEE
Q psy2393 118 VQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPII 197 (576)
Q Consensus 118 v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~ 197 (576)
+.++++.|. ++|++|+.++..|.+..
T Consensus 264 ~~~v~~~L~-~~g~~~e~dGa~~~~~~----------------------------------------------------- 289 (562)
T PRK12451 264 MEDFIGILE-EHDLLEESEGALVVNLE----------------------------------------------------- 289 (562)
T ss_pred HHHHHHHHH-HCCCEEecCCeEEEEec-----------------------------------------------------
Confidence 899999999 99999988877665210
Q ss_pred eeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccc
Q psy2393 198 KSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIG 277 (576)
Q Consensus 198 ~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~ 277 (576)
.+ |.+|..+-|+. |. .+|.--| ++
T Consensus 290 -------------~~------------------------------g~~~~vl~ksD---Gt--------~~Y~t~D--iA 313 (562)
T PRK12451 290 -------------EE------------------------------GMPPCLIRKSD---GA--------TIYATRD--LT 313 (562)
T ss_pred -------------cc------------------------------CCCceEEEeCC---Cc--------cccchhH--HH
Confidence 00 00122222322 21 1221111 11
Q ss_pred hhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCC--cEEeeeccEEeCCcc
Q psy2393 278 YLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLP--NNIFVHGFMTINGKK 355 (576)
Q Consensus 278 ~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p--~~~~~~g~v~~~g~K 355 (576)
|.. .+ +.. + ...++|+|.|.||..+...++ +++..+|+..+ -.++.+|+|.++|+|
T Consensus 314 ~~~------~k------------~~~-~--~~d~~IyV~g~dq~~h~~~l~-~~~~~lg~~~~~~l~h~~~g~V~~~g~k 371 (562)
T PRK12451 314 AAL------YR------------QNT-F--GFDKALYVVGPEQSLHFNQFF-TVLKKLGYTWVDGMEHVPFGLILKDGKK 371 (562)
T ss_pred HHH------HH------------hhc-c--CCCEEEEEeCCcHHHHHHHHH-HHHHHcCCCcccCeEEEeeeeEecCCCC
Confidence 110 00 000 0 012469999999974333343 45778887544 367888999999999
Q ss_pred ccccCCCccChhHHhhc------------------------CCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHH
Q psy2393 356 MSKSNKIGISPLYYLKI------------------------GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIG 411 (576)
Q Consensus 356 MSKS~gn~i~~~dll~~------------------------g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~ 411 (576)
|||++|++|+++||++. .+|.+++||++++.. ...+++|+++.+.+.. ++...
T Consensus 372 mStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~--~~~~~~Fd~d~~l~~~-g~t~p 448 (562)
T PRK12451 372 MSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNE--RMHNIEFSLENMLKFE-GETGP 448 (562)
T ss_pred CcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcC--CCCCceECHHHHhCcC-CCccH
Confidence 99999999999999983 267999999999984 4478999999977764 44466
Q ss_pred HHHHHHHHHHHHHHHHcCCC--CCCcc-cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCcc
Q psy2393 412 KYINIASRSSSFIEKYFKGY--LNMKW-VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487 (576)
Q Consensus 412 ~~~n~~~R~~~~~~~~~~~~--~~~~~-~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~ 487 (576)
+++++++|+++++++..... .+..+ .+.+..|+..+..+++.+.+++++++++.+++++++++..+|+||+.++..
T Consensus 449 YiQYa~AR~~SIlrka~~~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~Vl 527 (562)
T PRK12451 449 YVQYTHARACSILRKESVEFETCTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRIL 527 (562)
T ss_pred HHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999863110 11112 122278999999999999999999999999999999999999999988754
|
|
| >PLN02286 arginine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=290.77 Aligned_cols=333 Identities=12% Similarity=0.089 Sum_probs=240.3
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH----cCC------
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK----AGM------ 79 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~----~g~------ 79 (576)
++++++|....|+|+|++||||+|+.+++|+|+|.++..| |+|.....++|.|.++...+.. .+.
T Consensus 115 ~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G-----~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~ 189 (576)
T PLN02286 115 PVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSG-----VEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSD 189 (576)
T ss_pred CCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcC-----CceEEEEeecchHHHHHHHHHHHHHhcCcccccCc
Confidence 4478999999999999999999999999999999999999 9999999999999987654422 110
Q ss_pred -------------------CH------------------------HHHHHHHHHHHHHHHhhcCccccccccCCChhhHH
Q psy2393 80 -------------------TP------------------------KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENID 116 (576)
Q Consensus 80 -------------------~~------------------------~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~ 116 (576)
++ +.+++.....|++.+.+|||++|.. .+..|..
T Consensus 190 ~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~---ges~y~~ 266 (576)
T PLN02286 190 QAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEK---GESFYNP 266 (576)
T ss_pred ccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec---Cchhhhh
Confidence 00 1234455677899999999999873 2335777
Q ss_pred HHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccE
Q psy2393 117 LVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPI 196 (576)
Q Consensus 117 ~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~ 196 (576)
.+..++..|. ++|++|+.++..|.+-.. . +
T Consensus 267 ~~~~vi~~L~-~~g~~~e~dGa~~v~l~~-------------------------------------~--------~---- 296 (576)
T PLN02286 267 YIPGVIEELE-SKGLVVESDGARVIFVEG-------------------------------------F--------D---- 296 (576)
T ss_pred hHHHHHHHHH-HCCCEEeeCCceEeeccC-------------------------------------C--------C----
Confidence 7899999999 999999887766542100 0 0
Q ss_pred EeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeeccc
Q psy2393 197 IKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPI 276 (576)
Q Consensus 197 ~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~ 276 (576)
.+..|-|+. |. .+|
T Consensus 297 ------------------------------------------------~~~vl~ksD---Gt--------~tY------- 310 (576)
T PLN02286 297 ------------------------------------------------IPLIVVKSD---GG--------FNY------- 310 (576)
T ss_pred ------------------------------------------------CceEEEECC---Cc--------hhh-------
Confidence 011111221 11 111
Q ss_pred chhhh-cchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCC-C--C--cEEeeeccEE
Q psy2393 277 GYLAS-LKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRK-L--P--NNIFVHGFMT 350 (576)
Q Consensus 277 ~~~~~-~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~-~--p--~~~~~~g~v~ 350 (576)
++. +.+...+ +.. + ...++|+|.|.||..+...++ +++..+|+. . . -.++.+|+|+
T Consensus 311 --~t~DIA~~~~k------------~~~-~--~~d~~IyVvg~~q~~hf~~v~-~~l~~lG~~~~~~~~~l~h~~~g~V~ 372 (576)
T PLN02286 311 --ASTDLAALWYR------------LNE-E--KAEWIIYVTDVGQQQHFDMVF-KAAKRAGWLPEDTYPRLEHVGFGLVL 372 (576)
T ss_pred --HHHHHHHHHHH------------Hhc-c--CCCEEEEEEeCcHHHHHHHHH-HHHHHcCCCccccCCceEEEeeccEE
Confidence 111 0000000 000 0 012458889999874333333 467788864 3 2 3789999997
Q ss_pred e-CCccccccCCCccChhHHhhc----------------------------CCChhHHHHHHHhhCCCCCCCcccchhhH
Q psy2393 351 I-NGKKMSKSNKIGISPLYYLKI----------------------------GMNPEWLRYYIASKLNNKIEDIDFNSQSF 401 (576)
Q Consensus 351 ~-~g~KMSKS~gn~i~~~dll~~----------------------------g~g~d~lR~~l~~~~~~~~~d~~fs~~~~ 401 (576)
. +|+||||++|++|+++||++. .+|.+++||++++.+ ...+++|+++.+
T Consensus 373 ~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~--~~~~~~Fd~d~~ 450 (576)
T PLN02286 373 GEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNN--RLTNYTFSFDQM 450 (576)
T ss_pred CCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcC--CCCCCccCHHHH
Confidence 4 888999999999999999983 167899999999984 447899999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcCCC--CC----Cccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2393 402 ISCVNSDLIGKYINIASRSSSFIEKYFKGY--LN----MKWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT 474 (576)
Q Consensus 402 ~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~--~~----~~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~ 474 (576)
.+.. ++...+++++++|+++++++..... .. ..+. +++..|+..|..+++.|.++.++++++.++.++++++
T Consensus 451 l~~~-g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA 529 (576)
T PLN02286 451 LDLK-GNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLS 529 (576)
T ss_pred Hhhc-CCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 7664 5556699999999999999863211 11 1121 2227899999999999999999999999999999999
Q ss_pred HHHHHhhhhcCcc
Q psy2393 475 NFINIFFDQNKPW 487 (576)
Q Consensus 475 ~~~n~y~~~~k~~ 487 (576)
..+|+||+.++..
T Consensus 530 ~~F~~fY~~~~Vl 542 (576)
T PLN02286 530 EKFTKFYSNCKVN 542 (576)
T ss_pred HHHHHHHhcCccC
Confidence 9999999988643
|
|
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-32 Score=288.02 Aligned_cols=268 Identities=20% Similarity=0.298 Sum_probs=184.8
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCccc--------------------HHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHG--------------------AAIMI 72 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G--------------------~~i~~ 72 (576)
.++|.+|+ +|||.+||||+++++.+|+++|++|.+| ++|.+++|+|||| .|+..
T Consensus 24 ~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G-----~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~ 97 (510)
T PRK00750 24 PVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLG-----IKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTE 97 (510)
T ss_pred cEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcC-----CcEEEEEEEecCCcccccCCCCCchHHHHHhcCccccc
Confidence 36666655 7999999999999999999999999999 9999999999996 23333
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccccc
Q psy2393 73 AAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDR 152 (576)
Q Consensus 73 ~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~ 152 (576)
.+++.|+ ++++++++.+.+.+.|+.+||++|.+.+|.........+.+...|. +++.|..--.+.-=.+..++|+|
T Consensus 98 ~p~p~G~-~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~~~l~-~~~~i~~il~~~~~~~~~~~~~P-- 173 (510)
T PRK00750 98 IPDPFGC-HESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAILTALE-NRDEIMEILLPYLGEERQATYSP-- 173 (510)
T ss_pred CCCCCCC-chHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHHHHHH-hHHHHHHHHHHhcCCccCCCeee--
Confidence 4445565 8999999999999999999999997777765555567777777787 77776532211111122233333
Q ss_pred ceeccCCCCCCCCCCCCccccCCCcCCCCc----cCC---CcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCC
Q psy2393 153 YIKGECPICNAKDQYGDFCECCSSIYTPTK----LIN---PYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKR 225 (576)
Q Consensus 153 ~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~----l~~---p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~ 225 (576)
+...|++||+..+..- ... -+++.||+..+...... --||
T Consensus 174 --------------~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g-~~KL------------------ 220 (510)
T PRK00750 174 --------------FLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGG-HGKL------------------ 220 (510)
T ss_pred --------------eeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCC-Cccc------------------
Confidence 5677899998765321 111 12335777655333221 0122
Q ss_pred CChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccc
Q psy2393 226 LQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305 (576)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w 305 (576)
.|-+ +|+-. |. ++ |
T Consensus 221 --------------------~Wr~-----dW~~r-----------W~-----~l----------~--------------- 234 (510)
T PRK00750 221 --------------------QWKV-----DWPMR-----------WA-----AL----------G--------------- 234 (510)
T ss_pred --------------------CCCC-----CcHHH-----------HH-----Hc----------C---------------
Confidence 1211 12111 10 00 0
Q ss_pred cCCCcceEEEeeecCcc-hhHhHHHHHHH-hcCCCCCcEEeeeccEEeC-CccccccCCCccChhHHhhcCCChhHHHHH
Q psy2393 306 SSPNTEQYHFIGKDIFY-FHILFWPAILK-FSGRKLPNNIFVHGFMTIN-GKKMSKSNKIGISPLYYLKIGMNPEWLRYY 382 (576)
Q Consensus 306 ~~~~~~~i~~~G~D~~~-fh~~~~~a~l~-~~~~~~p~~~~~~g~v~~~-g~KMSKS~gn~i~~~dll~~g~g~d~lR~~ 382 (576)
..+.+.|+||.. .+... ..+.. .+|.+.|.. ++|||++++ |+|||||+||+|++.|+++. +++|++|||
T Consensus 235 -----Vd~e~~GkDh~~~s~~~~-~~i~~~ilg~~~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~-~~pd~lR~~ 306 (510)
T PRK00750 235 -----VDFEPFGKDHASASYDTS-KKIAREILGGEPPEP-FVYELFLDKKGEKISKSKGNVITIEDWLEY-APPESLRLF 306 (510)
T ss_pred -----CCEEeeCcccCcchHHHH-HHHHHHHcCCCCCee-eeeeeEEeCCCCcccccCCCccCHHHHHHH-CCHHHHHHH
Confidence 016678999987 44333 23444 778877754 889999996 99999999999999999999 999999988
Q ss_pred HHhhCCCCCCCcccch
Q psy2393 383 IASKLNNKIEDIDFNS 398 (576)
Q Consensus 383 l~~~~~~~~~d~~fs~ 398 (576)
++.. +...++++|++
T Consensus 307 l~~~-~~~~~~~~f~~ 321 (510)
T PRK00750 307 MFAR-PKPAKRLDFDV 321 (510)
T ss_pred HHhC-CCCCCCCcccH
Confidence 8764 34557788887
|
|
| >TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=265.03 Aligned_cols=267 Identities=19% Similarity=0.215 Sum_probs=176.9
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcc------------------cHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH------------------GAAIMIA 73 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~------------------G~~i~~~ 73 (576)
.+++|.+|.+ |||.+||||++..+.+|+++|++|++| ++|.+++++||| |.|+...
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g-----~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~v 91 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSG-----SEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRI 91 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcC-----CCEEEEEEEcCCcccccccccccHHHHHhCCCcceec
Confidence 4677777776 999999999999999999999999999 999999999999 9999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHhhcCccccccccCCCh---hhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccc
Q psy2393 74 AEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSI---ENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLP 150 (576)
Q Consensus 74 a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~---~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~ 150 (576)
+...|++ .++++|+.+.+.+.|+.|||+++....|... .|.+.+..++.+-. +=..|...... .+..++|+|
T Consensus 92 pdp~g~~-~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~~~L~~~~-~I~~il~~~~~---~~~~~~~~P 166 (515)
T TIGR00467 92 PDPEGCK-TSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIKIALDHRK-EISEILNEYRT---SKLEENWYP 166 (515)
T ss_pred CCCCCCc-HHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHHHHHHhHH-HHHHHHHHhcC---CccCCCcee
Confidence 9999996 8999999999999999999998766544321 23333333332222 11111100000 011222222
Q ss_pred ccceeccCCCCCCCCCCCCccccCCCcCCCCc------cCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC
Q psy2393 151 DRYIKGECPICNAKDQYGDFCECCSSIYTPTK------LINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK 224 (576)
Q Consensus 151 ~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~------l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~ 224 (576)
+...|++||+..++.. -+...| .||+..+......-- || ++..|+.++|
T Consensus 167 ----------------~~pic~~cGrv~~~~~~~~~~~~v~Y~c-~cG~~g~~~~~~g~~-KL--~WkvdW~~RW----- 221 (515)
T TIGR00467 167 ----------------ISVFCENCGRDTTTVNNYDNEYSIEYSC-ECGNQESVDIYTGAI-KL--PWRVDWPARW----- 221 (515)
T ss_pred ----------------eeeecCCcCccCceEEEecCCceEEEEc-CCCCEEEEeecCCCc-cc--CCCCCcHhhH-----
Confidence 5677899998755321 122344 477766644332211 33 2222222222
Q ss_pred CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCccccccccccc
Q psy2393 225 RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEF 304 (576)
Q Consensus 225 ~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 304 (576)
.+ + | .+
T Consensus 222 --------------------------------~~--------------------l----------g--------V~---- 227 (515)
T TIGR00467 222 --------------------------------KI--------------------E----------K--------VT---- 227 (515)
T ss_pred --------------------------------hh--------------------h----------C--------cc----
Confidence 11 0 0 01
Q ss_pred ccCCCcceEEEeeecCcch----hHhHHHHHHHhcCCCCCcEEeeeccEEe--CCccccccCCCccChhHHhhcCCChhH
Q psy2393 305 ISSPNTEQYHFIGKDIFYF----HILFWPAILKFSGRKLPNNIFVHGFMTI--NGKKMSKSNKIGISPLYYLKIGMNPEW 378 (576)
Q Consensus 305 w~~~~~~~i~~~G~D~~~f----h~~~~~a~l~~~~~~~p~~~~~~g~v~~--~g~KMSKS~gn~i~~~dll~~g~g~d~ 378 (576)
+...|+||.-. -.....| ..++|..+|.. +.++|+.+ +|+|||||+||+|+++|+++. +++|+
T Consensus 228 --------~Ep~GkDH~~~ggsy~~~~~ia-~~~l~~~~P~~-~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~-~~pda 296 (515)
T TIGR00467 228 --------FEPAGKDHAAAGGSYDTGVNIA-KEIFQYSPPVT-VQYEWISLKGKGGKMSSSKGDVISVKDVLEV-YTPEI 296 (515)
T ss_pred --------cccCCCCccCccCCchhHHHHH-HHHhCCCCCcC-cEEEEEEEcCCCccccCCCCCCccHHHHHHH-cCHHH
Confidence 22347777531 2223333 35677666643 44777756 667999999999999999999 99999
Q ss_pred HHHHHHhhCCCCCCCcccchhhH
Q psy2393 379 LRYYIASKLNNKIEDIDFNSQSF 401 (576)
Q Consensus 379 lR~~l~~~~~~~~~d~~fs~~~~ 401 (576)
+||++++. ...++++|+.+.+
T Consensus 297 lR~~~l~~--~~~~~ldFd~~~l 317 (515)
T TIGR00467 297 TRFLFART--KPEFHISFDLDVI 317 (515)
T ss_pred HHHHHhcc--CCCCCCcCCHHHH
Confidence 99998887 5567899999855
|
This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. |
| >cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-27 Score=224.03 Aligned_cols=122 Identities=18% Similarity=0.254 Sum_probs=114.1
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
+++|..++|||||++||||+|+++++|+++|+++++| ++|.++.++||+|++|+..|.+.+. ++++++.+.+.+
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G-----~~V~~~~~~~D~G~qi~~~a~~~~~-~~~~~~~~~~~~ 74 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLG-----YDVTREYYINDWGRQIGLLILSLEK-WRKLVEESIKAD 74 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCC-----CcEEEEeccCCcHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999 9999999999999999999987755 899999999999
Q ss_pred HHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecC
Q psy2393 93 KKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDP 143 (576)
Q Consensus 93 ~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~ 143 (576)
.+++++|||.+|.+.++++ +...+..+++.|. ++|++|+.++.+++|+
T Consensus 75 ~~~~~~L~i~~d~~~~es~--~~~~~~~~i~~L~-~~g~~~~~~g~~~~~~ 122 (212)
T cd00671 75 LETYGRLDVRFDVWFGESS--YLGLMGKVVELLE-ELGLLYEEDGALWLDL 122 (212)
T ss_pred HHHHHHhCCcCceecchhh--hhhHHHHHHHHHH-HCCCEEEeCCcEEEec
Confidence 9999999999999999885 4889999999999 9999999988887753
|
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=207.21 Aligned_cols=129 Identities=20% Similarity=0.261 Sum_probs=99.8
Q ss_pred ccCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc---------
Q psy2393 7 EFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA--------- 77 (576)
Q Consensus 7 ~~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~--------- 77 (576)
..+.+++++|..+.|+|+|++||||+|+.+++|+|+|.++..| |+|.....++|.|.++...+...
T Consensus 15 ~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G-----~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~ 89 (354)
T PF00750_consen 15 EKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAG-----YDVTRENYIGDWGTQIGLLAASYKKFGDEELL 89 (354)
T ss_dssp -TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTT-----EEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTS
T ss_pred ccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcC-----CeeeeEEEECCCCHHHHHHHHHHHhhhhhhhc
Confidence 3457789999999999999999999999999999999999999 99999999999999877544210
Q ss_pred ----------------------CC------------------------CHHHHHHH-HHHHHHHHHhhcCccccccccCC
Q psy2393 78 ----------------------GM------------------------TPKEFINN-ISSNRKKYLDGFYIKFDNWYSTD 110 (576)
Q Consensus 78 ----------------------g~------------------------~~~~~~~~-~~~~~~~~l~~lgi~~d~~~~t~ 110 (576)
.. ...+++.. +.+.++++|+++++.+|.++..+
T Consensus 90 ~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E~ 169 (354)
T PF00750_consen 90 EEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDES 169 (354)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEHC
T ss_pred ccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccc
Confidence 00 11123344 67788999999999999988776
Q ss_pred ChhhHHHHHHHHHHHHhcCCcEEecceeeee
Q psy2393 111 SIENIDLVQKIYDTLYNKAKLIINKKINQFF 141 (576)
Q Consensus 111 ~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~ 141 (576)
+..+...+..++..|. ++|++|+.++..|.
T Consensus 170 Es~~~~~v~~vl~~L~-e~g~~~~~dGa~~i 199 (354)
T PF00750_consen 170 ESFYSGKVDEVLERLK-EKGLLYESDGALWI 199 (354)
T ss_dssp HHHHTTHHHHHHHHHH-CTTTEEEETTEEEE
T ss_pred hhhhhhHHHHHHHHHH-hCCcEEecCCcEEE
Confidence 6667888999999999 99999988776665
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B. |
| >PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-24 Score=211.58 Aligned_cols=259 Identities=22% Similarity=0.309 Sum_probs=139.6
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCccc-------------------HHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHG-------------------AAIM 71 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G-------------------~~i~ 71 (576)
.+..+|+.+.-+|+|.+|||++|..+.+|+++|.++.+| .+|.++..+||.+ .|+.
T Consensus 21 ~~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g-----~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt 95 (360)
T PF01921_consen 21 GKEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRG-----KDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLT 95 (360)
T ss_dssp --SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT------EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTT
T ss_pred CCccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcC-----CCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccc
Confidence 345667777789999999999999999999999999999 9999999999863 2333
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhhcCccccccccCCC---hhhHHH----------HHHHHHHHHhcCCcEEeccee
Q psy2393 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDS---IENIDL----------VQKIYDTLYNKAKLIINKKIN 138 (576)
Q Consensus 72 ~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~---~~~~~~----------v~~~~~~L~~~~g~iy~~~~~ 138 (576)
......|+ ...|++|+.+.+.+.|+.|||+++....|.. -.|.+. +.+++.... ... ...
T Consensus 96 ~VPdP~G~-~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~-~~~-----~~~ 168 (360)
T PF01921_consen 96 RVPDPFGC-HESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYR-GRE-----RPE 168 (360)
T ss_dssp TSB-TTSS-SSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHH-HHT-------T
T ss_pred cCCCCCCC-CccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhc-CcC-----CCC
Confidence 33333444 5579999999999999999998876665532 123333 333333332 111 111
Q ss_pred eeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCC--------CccCCCcccCCCCccEEeeecceeEecCch
Q psy2393 139 QFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTP--------TKLINPYSILSGTKPIIKSSKHFFFKLSDK 210 (576)
Q Consensus 139 ~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~--------~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~ 210 (576)
.|| .+...|++||+..+. ..-+...|..||+..+......- -+| +
T Consensus 169 ~y~------------------------Pf~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~-gKL--~ 221 (360)
T PF01921_consen 169 TYS------------------------PFLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGN-GKL--Q 221 (360)
T ss_dssp T--------------------------SEEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT--EEE---
T ss_pred Cee------------------------eeeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCc-ccc--c
Confidence 222 145568888875332 12234577788887776655533 677 7
Q ss_pred hhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCC
Q psy2393 211 RCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGG 290 (576)
Q Consensus 211 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g 290 (576)
+..|+.++|. . .|+
T Consensus 222 WkvDW~mRW~----------------~------------------lgV-------------------------------- 235 (360)
T PF01921_consen 222 WKVDWPMRWA----------------A------------------LGV-------------------------------- 235 (360)
T ss_dssp HHHHHHHHHH----------------H------------------TT---------------------------------
T ss_pred CCCcChhhhh----------------h------------------cCc--------------------------------
Confidence 7677777661 1 111
Q ss_pred CCCcccccccccccccCCCcceEEEeeecCcchhHhHHHH--HH-HhcCCCCCcEEeeeccEEeCCc-cccccCCCccCh
Q psy2393 291 PKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPA--IL-KFSGRKLPNNIFVHGFMTINGK-KMSKSNKIGISP 366 (576)
Q Consensus 291 ~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a--~l-~~~~~~~p~~~~~~g~v~~~g~-KMSKS~gn~i~~ 366 (576)
+ +...|+||.-.-+.+-.+ +. ..+|.++| ..+.++|++++|+ |||||+||++++
T Consensus 236 ---------d------------fEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP-~~~~YE~~~~~g~~kmSsSkG~~~t~ 293 (360)
T PF01921_consen 236 ---------D------------FEPFGKDHASPGGSYDTSKRIAREILGYEPP-VPFPYEFFLDKGGGKMSSSKGNGITP 293 (360)
T ss_dssp ---------S------------EEEEEHHHHCTTSHHHHHHHHHHHCC------EEEEE--EEES--------------H
T ss_pred ---------e------------eccCCCccCCCCCChhhHHHHHHHHhCCCCC-CCCCeeEEEeCCCcccccCCCCccCH
Confidence 0 345688886533322222 33 44666655 5688999999776 999999999999
Q ss_pred hHHhhcCCChhHHHHHHHhhCCCCCCCcccc
Q psy2393 367 LYYLKIGMNPEWLRYYIASKLNNKIEDIDFN 397 (576)
Q Consensus 367 ~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs 397 (576)
+|+++- +.+++|||+++++.|....++.|+
T Consensus 294 ~e~L~~-~~PE~lr~l~~~~~P~~~~~~~~~ 323 (360)
T PF01921_consen 294 EEWLEY-APPESLRYLMARTKPNKAKDFSFD 323 (360)
T ss_dssp HHHHTT-S-HHHHHHHHHCS-TTS-EEE--S
T ss_pred HHHHHh-cCHHHHHHHHcccCCCcceEeccC
Confidence 999999 999999999999777766555544
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A. |
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-21 Score=197.79 Aligned_cols=258 Identities=22% Similarity=0.289 Sum_probs=162.9
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcc--------------------cHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH--------------------GAAIMI 72 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~--------------------G~~i~~ 72 (576)
.-+++.+.-+|+|.+|||++|..+.+|+++|.++.+| ++|.+|.-+||+ |.|+..
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g-----~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~ 93 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRG-----DEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTE 93 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcC-----CceEEEEEccCCcccccCCCCCCChHHHHHHcCCcccc
Confidence 3466666779999999999999999999999999999 999999999986 333333
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhcCccccccccCCChh---hHHH----------HHHHHHHHHhcCCcEEecceee
Q psy2393 73 AAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIE---NIDL----------VQKIYDTLYNKAKLIINKKINQ 139 (576)
Q Consensus 73 ~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~---~~~~----------v~~~~~~L~~~~g~iy~~~~~~ 139 (576)
.....| .+..|++|+.+.|.+.|+.+||.+.....|.... |.+. +.+++.... .+ .-...
T Consensus 94 IPdP~G-~~~Sya~hf~~~f~~~l~~~Gi~~E~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~-~~-----~~~e~ 166 (521)
T COG1384 94 IPDPFG-CCDSYAEHFLRPFEEFLDEFGIEVEFVSATELYKSGLYDEAIRIALERRDEIMEILNEYR-GR-----ELEED 166 (521)
T ss_pred CCCCcc-ccchHHHHHHHHHHHHHHhcCCceEEEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhc-CC-----cccCC
Confidence 333445 3668999999999999999999887665543211 2222 223333322 11 11122
Q ss_pred eecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCcc-------CCCcccCCCCccEEeeecceeEecCchhh
Q psy2393 140 FFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKL-------INPYSILSGTKPIIKSSKHFFFKLSDKRC 212 (576)
Q Consensus 140 ~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l-------~~p~~~~~~~~~~~~~~~~~f~~l~~~~~ 212 (576)
|| .+...|++||+..+..-+ +..+| .||+..+.-.. .+
T Consensus 167 ~~------------------------P~~piC~kcGri~~t~v~~~d~~~~v~Y~C-e~Gh~g~v~ir-~g--------- 211 (521)
T COG1384 167 WS------------------------PFMPICEKCGRILTTPVIEWDGEGTVEYRC-ECGHEGEVDIR-GG--------- 211 (521)
T ss_pred ce------------------------eccccccccCCcceeEEEEecCCceEEEEe-cCCccceeecc-cc---------
Confidence 33 266778888885432111 11122 23433221110 00
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCC
Q psy2393 213 IDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPK 292 (576)
Q Consensus 213 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~ 292 (576)
.+--.|-+ .|+.. |. ++ |
T Consensus 212 -----------------------------~~KL~WRv-----dWp~R-----------W~-----~l----------g-- 229 (521)
T COG1384 212 -----------------------------EGKLPWRV-----DWPMR-----------WA-----AL----------G-- 229 (521)
T ss_pred -----------------------------CcccccCc-----Cccch-----------hh-----cc----------C--
Confidence 01112211 23221 10 00 0
Q ss_pred CcccccccccccccCCCcceEEEeeecCcchhHhHHHHH--HH-hcCCCCCcEEeeeccEEeCC-ccccccCCCccChhH
Q psy2393 293 KKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAI--LK-FSGRKLPNNIFVHGFMTING-KKMSKSNKIGISPLY 368 (576)
Q Consensus 293 ~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~--l~-~~~~~~p~~~~~~g~v~~~g-~KMSKS~gn~i~~~d 368 (576)
.+ +...||||.-.-+.+=.+. +. ..|.++| .-+.+.|++++| +|||||+||+|+++|
T Consensus 230 ------Vd------------~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP-~~~~YE~i~lkg~~~mSsSkG~~i~~~d 290 (521)
T COG1384 230 ------VD------------FEPFGKDHAAAGGSYDTGKRIAREIFGYEPP-VPFVYEWILLKGGGKMSSSKGNVISLSD 290 (521)
T ss_pred ------cc------------cccCCcccccccCchHHHHHHHHHhcCCCCC-CCCceEEEEecCCcccccCCCcEEcHHH
Confidence 00 3346888864433333322 22 3466655 357789999966 899999999999999
Q ss_pred HhhcCCChhHHHHHHHhhCCCCCCCcccchh
Q psy2393 369 YLKIGMNPEWLRYYIASKLNNKIEDIDFNSQ 399 (576)
Q Consensus 369 ll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~ 399 (576)
+++- +.++.|||+++++.|....+++|+..
T Consensus 291 wlev-~~pE~lry~~~r~kP~r~~~~d~~~~ 320 (521)
T COG1384 291 WLEV-APPEVLRYLIARTKPNRHIDFDFDLG 320 (521)
T ss_pred HHHh-cCHhHeeeeeeecCCCcceecCCCCC
Confidence 9999 99999999999988887776666653
|
|
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-19 Score=159.83 Aligned_cols=77 Identities=26% Similarity=0.251 Sum_probs=74.6
Q ss_pred EEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2393 16 VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKY 95 (576)
Q Consensus 16 v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 95 (576)
|+.++|||||++||||+|+++++|+++|++|++| ++|.++.|+||+|.++...|.+.+.+++++++++.+.++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G-----~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 75 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLG-----YKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKED 75 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcC-----CCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred Hh
Q psy2393 96 LD 97 (576)
Q Consensus 96 l~ 97 (576)
++
T Consensus 76 ~~ 77 (143)
T cd00802 76 VE 77 (143)
T ss_pred HH
Confidence 98
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >KOG4426|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-16 Score=155.19 Aligned_cols=329 Identities=16% Similarity=0.162 Sum_probs=220.9
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHH----HHHHHHHc--------
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAA----IMIAAEKA-------- 77 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~----i~~~a~~~-------- 77 (576)
..++++|..+.|+....+|+||+|+.|++|.++|.+.+.| ++|+.+..+.|.|+. |+..-++.
T Consensus 186 ~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~-----~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp 260 (656)
T KOG4426|consen 186 SVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSG-----VDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSP 260 (656)
T ss_pred ceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcC-----cceEeeccccchHHHHHHHHHHHHHhCCchhccCC
Confidence 4478999999999999999999999999999999999999 999999999987764 33322221
Q ss_pred ----------------------------------CCC------HHHHHHHHHHHHHHHHhhcCccccccccCCChhhHHH
Q psy2393 78 ----------------------------------GMT------PKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDL 117 (576)
Q Consensus 78 ----------------------------------g~~------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~ 117 (576)
|-. ...+|+-..+++....++|.|+..- .-+..|...
T Consensus 261 ~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e---~GESFYq~~ 337 (656)
T KOG4426|consen 261 PIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKE---RGESFYQDR 337 (656)
T ss_pred CchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhh---cchhhhhhH
Confidence 111 1235777888999999999997532 124468888
Q ss_pred HHHHHHHHHhcCCcEEecceee-eecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccE
Q psy2393 118 VQKIYDTLYNKAKLIINKKINQ-FFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPI 196 (576)
Q Consensus 118 v~~~~~~L~~~~g~iy~~~~~~-~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~ 196 (576)
+.++++.|. .+|++.+.++.. .|-+. |+-|..
T Consensus 338 m~~vveel~-~kglvee~~Gr~i~f~~g----------------------------------------------~~IPLt 370 (656)
T KOG4426|consen 338 MAEVVEELK-SKGLVEEDDGRRIMFPEG----------------------------------------------CDIPLT 370 (656)
T ss_pred HHHHHHHHh-cCCceeecCCceEeccCC----------------------------------------------CCcceE
Confidence 999999999 999999877433 23111 111222
Q ss_pred Eeeec-ceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecc
Q psy2393 197 IKSSK-HFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAP 275 (576)
Q Consensus 197 ~~~~~-~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~ 275 (576)
...++ .+-.+. +++... | - ... +...||
T Consensus 371 vVKSDGGftYdt--sDlaAl---~------------y---Rl~---EEkadw---------------------------- 399 (656)
T KOG4426|consen 371 VVKSDGGFTYDT--SDLAAL---K------------Y---RLN---EEKADW---------------------------- 399 (656)
T ss_pred EEecCCCccccc--chHHHH---H------------H---HHH---HhhcCe----------------------------
Confidence 22211 111111 111100 0 0 000 011222
Q ss_pred cchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCc-chhHhHHHHHHHhcCC---CCCc-EEeeeccEE
Q psy2393 276 IGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIF-YFHILFWPAILKFSGR---KLPN-NIFVHGFMT 350 (576)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~-~fh~~~~~a~l~~~~~---~~p~-~~~~~g~v~ 350 (576)
+|+|....|. .|..++-.| ...|+ ..|+ .++..|.|+
T Consensus 400 ------------------------------------iIYVvD~GQs~Hf~t~fkAa--r~~gwld~~~~RV~HvgFGlVL 441 (656)
T KOG4426|consen 400 ------------------------------------IIYVVDSGQSQHFNTIFKAA--RKAGWLDPTYPRVEHVGFGLVL 441 (656)
T ss_pred ------------------------------------EEEEeeCchhHHHHHHHHHH--HHcCccCCCccceeeeeeeeEE
Confidence 2455433332 233333222 22332 2333 556667777
Q ss_pred e-CCccccccCCCccChhHHhhcC----------------------------CChhHHHHHHHhhCCCCCCCcccchhhH
Q psy2393 351 I-NGKKMSKSNKIGISPLYYLKIG----------------------------MNPEWLRYYIASKLNNKIEDIDFNSQSF 401 (576)
Q Consensus 351 ~-~g~KMSKS~gn~i~~~dll~~g----------------------------~g~d~lR~~l~~~~~~~~~d~~fs~~~~ 401 (576)
. +|+|+-++.|.+|-+.||++.| ++-..+.|.-+++ +...|..||.+.+
T Consensus 442 GeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~h--nR~~dY~FSFDkM 519 (656)
T KOG4426|consen 442 GEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSH--NRITDYIFSFDKM 519 (656)
T ss_pred ccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhcc--ccccceeeeHHHH
Confidence 6 7789999999999999998631 3334577777776 6667889999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcCC------------CCCCcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2393 402 ISCVNSDLIGKYINIASRSSSFIEKYFKG------------YLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYI 469 (576)
Q Consensus 402 ~~~~~~~~~~~~~n~~~R~~~~~~~~~~~------------~~~~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~ 469 (576)
++-. ++...++-+++.|+++++++.... .++...+.+ ..|-..|.++.+.+.++.+++-+|..+.+
T Consensus 520 L~Dr-GnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E-~kLg~~lLkf~e~v~~~~~~L~lh~lC~y 597 (656)
T KOG4426|consen 520 LEDR-GNTAVYLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKE-WKLGKHLLKFAEIVEKALDSLFLHVLCDY 597 (656)
T ss_pred hhcc-CcceehhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7753 667888899999999999875221 111111113 56778899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCc
Q psy2393 470 VIEQTNFINIFFDQNKP 486 (576)
Q Consensus 470 l~~~~~~~n~y~~~~k~ 486 (576)
+++++..+..||+.|..
T Consensus 598 ~y~l~t~Ft~FY~~Cyv 614 (656)
T KOG4426|consen 598 LYELATLFTEFYDSCYV 614 (656)
T ss_pred HHHHHHHHHHHhhccEE
Confidence 99999999999999864
|
|
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.4e-16 Score=163.54 Aligned_cols=286 Identities=16% Similarity=0.140 Sum_probs=161.4
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++-.+|+|||+|||||||++++.+.++| .+.| .++.-+||.+.+|.. ....+.+.|.+
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar--~~~G--------~~iLRidDTDpk~~R-----------~~~e~~~~I~e 160 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK--MYGG--------KFILRFEDTDPRTKR-----------PDPEAYDMILE 160 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCC--------EEEEeEccCCCCccc-----------chHHHHHHHHH
Confidence 67778999999999999999999999999 4444 555556666553311 12344589999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccC
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECC 174 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~c 174 (576)
+|++||+.||..+..+ .+.+...+...+|. ++|++|.-. |...+ +... ...|.-|
T Consensus 161 dL~wLGl~wD~~~~qS--dr~~~y~~~a~~Li-~~G~AY~C~-----cs~ee--~~~~------------r~~g~~~--- 215 (567)
T PRK04156 161 DLKWLGVKWDEVVIQS--DRLEIYYEYARKLI-EMGGAYVCT-----CDPEE--FKEL------------RDAGKPC--- 215 (567)
T ss_pred HHHHcCCCCCCccCcc--cCHHHHHHHHHHHH-HcCCCccCC-----CCHHH--HHHH------------HhcCCCC---
Confidence 9999999999777665 67888889999999 999999621 11100 0000 0000000
Q ss_pred CCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCC--ChhHHHHHHHHHhhcCCCCCcccccC
Q psy2393 175 SSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRL--QPEIVNKIKEWLEKDNKFNDWDISRD 252 (576)
Q Consensus 175 g~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~dw~isR~ 252 (576)
.| |.-+ . .+-.+...+. .+...- +...+-.+ +.-..+...+||.+-|.
T Consensus 216 ------------~~-R~~~-------------~--ee~l~~~e~m-~~G~~~~g~~vlR~k~-d~~~~n~~~rD~v~~R~ 265 (567)
T PRK04156 216 ------------PH-RDKS-------------P--EENLELWEKM-LDGEYKEGEAVVRVKT-DLEHPNPSVRDWVAFRI 265 (567)
T ss_pred ------------CC-cCCC-------------H--HHHHHHHHHh-hcCccccCCeEEEEEC-cccCCCCCccccEEEEE
Confidence 00 0000 0 0000000111 100000 00000000 00000123467766664
Q ss_pred CCCCCeecCCC-CCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEe-eecCcchhHhHHHH
Q psy2393 253 APYFGIKIPNT-LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI-GKDIFYFHILFWPA 330 (576)
Q Consensus 253 ~~~WG~~iP~~-~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~-G~D~~~fh~~~~~a 330 (576)
. +.+-|.. .+.++|.-.+ ++. -.+ |....+.|++ |.|+.- +...+..
T Consensus 266 ~---~~~h~~~Gd~~~i~PtY~-----fA~------------------~VD----D~l~GITHViRg~d~~~-~t~~Q~~ 314 (567)
T PRK04156 266 V---KTPHPRVGDKYRVWPTYN-----FAV------------------AVD----DHLLGVTHVLRGKDHID-NTEKQRY 314 (567)
T ss_pred c---CCCccccCCCeEEEEEec-----cCc------------------eee----ecCCCCCeEEccccccc-ChHHHHH
Confidence 3 2222211 1112211110 110 001 1112346666 777762 2223333
Q ss_pred HHHhcCCCCCcEEeeeccEEeCCccccccC-------C--------CccChhHHhhcCCChhHHHHHHHhhCCCCCCCcc
Q psy2393 331 ILKFSGRKLPNNIFVHGFMTINGKKMSKSN-------K--------IGISPLYYLKIGMNPEWLRYYIASKLNNKIEDID 395 (576)
Q Consensus 331 ~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~-------g--------n~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~ 395 (576)
++.++|.+.| .+.|+++++.+|.|||||+ | +..++..+.+.|+.|+++|.|++..+. ...+..
T Consensus 315 l~~~Lg~~~P-~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~-s~~~~~ 392 (567)
T PRK04156 315 IYDYFGWEYP-ETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGV-KETDAT 392 (567)
T ss_pred HHHHcCCCCc-eEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCC-CCCCcc
Confidence 5677787654 5688999999999999998 4 447889999999999999999997643 446789
Q ss_pred cchhhHhhhhhHHHH
Q psy2393 396 FNSQSFISCVNSDLI 410 (576)
Q Consensus 396 fs~~~~~~~~~~~~~ 410 (576)
|+++.+.+. |++.+
T Consensus 393 ~~~~~L~~~-nr~~l 406 (567)
T PRK04156 393 ISWENLYAI-NRKLI 406 (567)
T ss_pred cCHHHHHHH-HHHHH
Confidence 999976554 34433
|
|
| >cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-16 Score=139.08 Aligned_cols=125 Identities=30% Similarity=0.490 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCc--cc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q psy2393 406 NSDLIGKYINIASRSSSFIEKYFKGYLNMK--WV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482 (576)
Q Consensus 406 ~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~--~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~ 482 (576)
|+++.++++|+++|+.+++.+.+++.+|.. +. .| .|+++.+..+.+++.++|++|+++.+++.+++|++.+|+|++
T Consensus 2 n~~l~~~~gnll~r~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~n~y~~ 80 (129)
T cd07957 2 NSELANNLGNLVNRTLNMASKYFGGVVPEFGGLTEED-EELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYID 80 (129)
T ss_pred cHHHHhhHhhHHHHHHHHHHHHcCCcCCCCCCCCccc-HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhc
Confidence 467889999999999999998887766642 22 26 999999999999999999999999999999999999999999
Q ss_pred hcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHc
Q psy2393 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFL 532 (576)
Q Consensus 483 ~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L 532 (576)
..+||.+.+++ ...+++.+++++.++++.++++|+||||++||++|+.|
T Consensus 81 ~~kpw~~~~~~-~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 81 ETAPWKLAKEE-DPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred cCCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 99999876542 23456778889999999999999999999999999875
|
This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. |
| >cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=143.16 Aligned_cols=96 Identities=19% Similarity=0.135 Sum_probs=77.3
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++-.+|+|||.+||||++++++.++++| + +++.++..+||.+.+.+ + ..+.+.+.|.+
T Consensus 2 v~~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~-----~~G~~ilRieDtD~~r~--------~---~~~~~~~~i~~ 60 (240)
T cd09287 2 VVMRFAPNPNGPLHLGHARAAILNGEYAK-----M-----YGGKFILRFDDTDPRTK--------R---PDPEAYDMIPE 60 (240)
T ss_pred ceEeCCCCCCCCccHHHHHHHHHHHHHHH-----H-----cCCEEEEeeCcCCCCcc--------c---chHHHHHHHHH
Confidence 35667899999999999999999999999 4 55677777888776643 1 22444556999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||+.||..+..+ ++.+..++...+|. ++|.+|.
T Consensus 61 dL~wLGl~~d~~~~qS--~r~~~y~~~~~~Li-~~G~aY~ 97 (240)
T cd09287 61 DLEWLGVKWDEVVIAS--DRIELYYEYARKLI-EMGGAYV 97 (240)
T ss_pred HHHHcCCCCCCccchh--ccHHHHHHHHHHHH-HcCCccc
Confidence 9999999999665544 67888888999999 9999996
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PRK12558 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-15 Score=154.63 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=76.2
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||.|||||+|+++....++| +..| .-++++-.+|- ....+.+.+.|.+
T Consensus 3 vr~RFAPSPTG~lHiG~artAL~n~l~Ar--~~gG-----~fiLRIEDTD~----------------~Rs~~~~~~~I~e 59 (445)
T PRK12558 3 VITRFAPSPTGYLHVGNARTALLNWLYAR--KHGG-----KFILRIDDTDL----------------ERSKQEYADAIAE 59 (445)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEeccCCc----------------ccchHHHHHHHHH
Confidence 45666899999999999999999999998 6667 66666655542 1233678899999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++|||+||.+++.+ +....+++++.+|. ++|++|.
T Consensus 60 ~L~wLGI~~De~y~QS--er~~~y~~~~e~L~-e~G~AY~ 96 (445)
T PRK12558 60 DLKWLGINWDRTFRQS--DRFDRYDEAAEKLK-AAGRLYP 96 (445)
T ss_pred HHHHcCCCCCccccHH--HHHHHHHHHHHHHH-HCCCEEE
Confidence 9999999999877655 44568899999999 9999986
|
|
| >KOG1195|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-14 Score=147.94 Aligned_cols=361 Identities=15% Similarity=0.097 Sum_probs=226.9
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHH---HcC-------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAE---KAG------- 78 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~---~~g------- 78 (576)
..+++++|..+.|+.+.+.|+||+|+.+++-+++...+..| ++|..+....|.|..+-..|. +.|
T Consensus 107 ~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G-----~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~ 181 (567)
T KOG1195|consen 107 GSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALG-----WEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQL 181 (567)
T ss_pred ccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhC-----CceeehhhhhHHHHHhhHHhccHHhhCchhhhcc
Confidence 34689999999999999999999999999999999999999 999998888887775543331 001
Q ss_pred --------------------CC----------------------HHHHHHHHHHHHHHHHhhcCccccccccCCChhhHH
Q psy2393 79 --------------------MT----------------------PKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENID 116 (576)
Q Consensus 79 --------------------~~----------------------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~ 116 (576)
.+ .+.+-+..++...+..++|||.||.+...+. -+.+
T Consensus 182 ~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gESq-v~~e 260 (567)
T KOG1195|consen 182 NPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGESQ-VSNE 260 (567)
T ss_pred chHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchHH-HHHH
Confidence 00 0112223355667788899999998876543 4677
Q ss_pred HHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccE
Q psy2393 117 LVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPI 196 (576)
Q Consensus 117 ~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~ 196 (576)
..+.+...+. .+|++...++...+
T Consensus 261 ~~~~~~d~~r-s~~l~~e~dG~~vi------------------------------------------------------- 284 (567)
T KOG1195|consen 261 KMQEALDLLR-SANLTEEIDGTIVI------------------------------------------------------- 284 (567)
T ss_pred HHHHHHHHHH-hcCCcccCCCcEEE-------------------------------------------------------
Confidence 7888888888 87765554433322
Q ss_pred EeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeeccc
Q psy2393 197 IKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPI 276 (576)
Q Consensus 197 ~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~ 276 (576)
+| +++-+.+. .++.+. .++.++|
T Consensus 285 ---------dL--~~~~~~~~-----------------------------~~~V~k----------sdgttLY------- 307 (567)
T KOG1195|consen 285 ---------DL--SKIDKKAG-----------------------------KAVVQK----------SDGTTLY------- 307 (567)
T ss_pred ---------Ee--cccCcccc-----------------------------eEEEEc----------CCCceeh-------
Confidence 22 11000000 000000 0111121
Q ss_pred chhhhc-chhhhhCCCCCcccccccccccccCCCcceEEEeeecCc-chhHhHHHHHHHhcCCCCC--cEEeeeccEEeC
Q psy2393 277 GYLASL-KNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIF-YFHILFWPAILKFSGRKLP--NNIFVHGFMTIN 352 (576)
Q Consensus 277 ~~~~~~-~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~-~fh~~~~~a~l~~~~~~~p--~~~~~~g~v~~~ 352 (576)
++.- +...... +.|. ..+++++....|- .|-..+ -++..+|.+.. -.++..|.|
T Consensus 308 --ltRdiaaal~Rl---------~~y~------fdr~iYVvd~~Q~~hf~~lf--~ilk~mg~~~a~~~qHV~~G~v--- 365 (567)
T KOG1195|consen 308 --LTRDIAAALDRL---------EKYS------FDRLIYVVDSQQKDHFCQLF--EILKKMGFDWAKKLQHVNFGRV--- 365 (567)
T ss_pred --HHHHHHHHHHHH---------HhcC------cceEEEEechHHHHHHHHHH--HHHHHhCchhhhhcceeccccc---
Confidence 1110 0000000 1111 1235777765443 222222 25677787643 355555554
Q ss_pred CccccccCCCccChhHHhhcC---------------------------CChhHHHHHHHhhCCCCCCCcccchhhHhhhh
Q psy2393 353 GKKMSKSNKIGISPLYYLKIG---------------------------MNPEWLRYYIASKLNNKIEDIDFNSQSFISCV 405 (576)
Q Consensus 353 g~KMSKS~gn~i~~~dll~~g---------------------------~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~ 405 (576)
.-||+++|+++..+|+++++ .|..++..-.+.. -...+..|+|+++.+.
T Consensus 366 -~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~--rr~s~yeF~w~~~~~~- 441 (567)
T KOG1195|consen 366 -QGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKG--RRISNYEFSWNRVLSF- 441 (567)
T ss_pred -ccccccCCceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHH--HhcccceEEhhhhhee-
Confidence 36999999999999988620 6677777766654 3446779999988766
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCC------c-cc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2393 406 NSDLIGKYINIASRSSSFIEKYFKGYLNM------K-WV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFI 477 (576)
Q Consensus 406 ~~~~~~~~~n~~~R~~~~~~~~~~~~~~~------~-~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~ 477 (576)
+++...++++++.|+.++.++..+-..+. . +. ++...|+..|..+++.+..+++.++++.++.||+.++..+
T Consensus 442 ~gdtg~yLQY~HsRL~Slerk~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~ 521 (567)
T KOG1195|consen 442 EGDTGPYLQYTHSRLRSLERKFSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAV 521 (567)
T ss_pred cCCchHHHHHHHHHHHHHHHhccccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 47778899999999999988753221111 1 11 1225688999999999999999999999999999999999
Q ss_pred HHhhhhcCccccccCcccHHH---HHHHHHHHHHHHHHHHH
Q psy2393 478 NIFFDQNKPWKLAKNNIYHEK---LHKISSRLLEAFRILTI 515 (576)
Q Consensus 478 n~y~~~~k~~~~~~~~~~~~~---~~~v~~~l~~~l~~l~~ 515 (576)
++.+...+......+ ....+ ..++..+|.+.+++|++
T Consensus 522 s~~yk~l~V~d~~~e-ia~aRL~Lf~AvRqVL~ngm~lLGi 561 (567)
T KOG1195|consen 522 SSAYKILWVKDSPME-IALARLLLFSAVRQVLNNGMRLLGI 561 (567)
T ss_pred HhHHhheeecCCcHH-HHHHHHHHHHHHHHHHHhHHHHhCC
Confidence 988877553211111 11111 23444556666666553
|
|
| >TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-13 Score=144.18 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=73.2
Q ss_pred EEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2393 16 VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKY 95 (576)
Q Consensus 16 v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 95 (576)
++--+|+|||.|||||+|++++...++| ...| .-++++-.+|- ....+.+.+.|.++
T Consensus 3 ~~RfAPsPtG~lHiG~~rtal~n~l~Ar--~~~G-----~~iLRieDtD~----------------~R~~~~~~~~i~~~ 59 (470)
T TIGR00464 3 RTRFAPSPTGYLHIGGARTALFNYLFAK--HTGG-----EFILRIEDTDL----------------ERNIEEAEEAILEG 59 (470)
T ss_pred eEeeCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEEeCcCCC----------------ccCChHHHHHHHHH
Confidence 4556799999999999999999999999 6667 66677655543 12335677889999
Q ss_pred HhhcCcccc-ccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 96 LDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 96 l~~lgi~~d-~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
|++||++|| -.|..+ ++.+..+++..+|. ++|.+|.
T Consensus 60 L~wlGl~~de~~~~QS--~r~~~y~~~~~~L~-~~g~aY~ 96 (470)
T TIGR00464 60 LKWLGISWDEGPYYQS--QRLDIYKKYAKELL-EEGLAYR 96 (470)
T ss_pred HHHCCCCCCCCeeehh--CCHHHHHHHHHHHH-HcCCEEe
Confidence 999999999 555444 45666778889999 9999996
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences. |
| >PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=149.19 Aligned_cols=276 Identities=17% Similarity=0.156 Sum_probs=156.2
Q ss_pred CCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q psy2393 19 ALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDG 98 (576)
Q Consensus 19 ~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 98 (576)
-.|+|||+|||||+|++++...++| ++.| .-++++-.+|.. ...+.+.+.|.++|++
T Consensus 4 FAPSPTG~LHiG~artAL~n~l~Ar--~~gG-----~fiLRiEDTD~~----------------R~~~e~~~~I~~~L~W 60 (433)
T PRK12410 4 FAPSPTGDMHIGNLRAAIFNYIVAK--QQNE-----DFLIRIEDTDKE----------------RNIEGKDKEILEILNL 60 (433)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEEeCcCCCC----------------cCChHHHHHHHHHHHH
Confidence 3699999999999999999999999 7778 777777666541 2235667899999999
Q ss_pred cCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcC
Q psy2393 99 FYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIY 178 (576)
Q Consensus 99 lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~ 178 (576)
||++||-.|..+ ++.+.-.++..+|. ++|.+|. -||... -+...- ..-...+....|...|- ..
T Consensus 61 lGl~wDe~y~QS--eR~~~Y~~~a~~Li-~~G~AY~-----C~cs~e--el~~~r--~~~~~~g~~~~Y~g~cr----~l 124 (433)
T PRK12410 61 FGISWDKLVYQS--ENLKFHRQMAEKLL-SEKKAFA-----CFCSEE--ELEAKK--EKAKNEKKPYRYDGTCE----NL 124 (433)
T ss_pred cCCCCCCCeehh--ccHHHHHHHHHHHH-HcCCeee-----ecCCHH--HHHHHH--HHHhhcCCCCCCCchhh----CC
Confidence 999999766554 56677788999999 9999985 112111 000000 00000000000111110 00
Q ss_pred CCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCe
Q psy2393 179 TPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGI 258 (576)
Q Consensus 179 ~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~ 258 (576)
+.++. ...|.+.. |-|++ +. .... |...++..+. +-. ..+.|+.|-|.. |.
T Consensus 125 ~~~e~-----~~~g~~~~------iR~k~--p~---~~~~-------f~D~v~G~i~-~~~--~~~~D~Vi~R~D---g~ 175 (433)
T PRK12410 125 EDDEV-----LNCNKPFV------VRLKK--PN---HTMS-------FTDAIKGEVS-FEP--DEIDSFVILRAD---KT 175 (433)
T ss_pred CHhHH-----HhcCCCeE------EEEEc--CC---Ccee-------eeeccceeEE-ecc--ccCCCeEEEcCC---CC
Confidence 10000 00111111 11222 10 0000 0000000000 000 234566666655 33
Q ss_pred ecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEe-eecCcchhHhHHHHHHHhcCC
Q psy2393 259 KIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI-GKDIFYFHILFWPAILKFSGR 337 (576)
Q Consensus 259 ~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~-G~D~~~fh~~~~~a~l~~~~~ 337 (576)
|.= .+-+-.| |....+.||+ |.|++.. +..+..+..++|.
T Consensus 176 PtY-----~fA~vVD---------------------------------D~~mgIThViRG~d~l~~-tp~Qi~Ly~aLg~ 216 (433)
T PRK12410 176 PTY-----NFACAVD---------------------------------DMLYDISLIIRGEDHVSN-TPKQILIREALGY 216 (433)
T ss_pred ccc-----cccchhc---------------------------------hhhcCCCEEEechhhhhC-cHHHHHHHHHcCC
Confidence 210 0000011 1123457888 9999732 2233346788898
Q ss_pred CCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhh
Q psy2393 338 KLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFIS 403 (576)
Q Consensus 338 ~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~ 403 (576)
+.|..+.|+.+++. +|+||||+.| ..++.++.+.||.|++++-|++..+.... +-.|+.+++.+
T Consensus 217 ~~pp~f~Hlpli~~~~g~KLSKR~~-~~~v~~~r~~G~~PeAi~n~l~~lG~~~~-~e~~~~~eli~ 281 (433)
T PRK12410 217 NKEITYAHLPIILNEEGKKMSKRDN-ASSVKWLLEQGFLPSAIANYLILLGNKTP-KEIFTLEEAIE 281 (433)
T ss_pred CCCCeEEEeeeeeCCCCCeeecccC-hhhHHHHHHCCCCHHHHHHHHHHhCCCCc-ccccCHHHHHH
Confidence 87767888888877 9999999988 57899999999999999999998754322 22455555443
|
|
| >PLN03233 putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-14 Score=149.72 Aligned_cols=95 Identities=20% Similarity=0.164 Sum_probs=78.6
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
-+++--+|.|||.||||||+++++...++| .+.| .-++++-.+|- ..-...+.+.|.
T Consensus 11 ~v~tRFAPsPtG~LHiGharaAlln~l~Ar--~~gG-----~~iLRiEDTDp----------------~R~~~e~~~~I~ 67 (523)
T PLN03233 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYAR--RYKG-----RLILRFDDTNP----------------SKEKAEFEESII 67 (523)
T ss_pred eEEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEECCCCC----------------CccchHHHHHHH
Confidence 378888999999999999999999999998 5678 66666655543 223356788999
Q ss_pred HHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 94 KYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 94 ~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
++|+.||+.||..+.++ .+-+...+...+|. ++|.+|.
T Consensus 68 ~dL~WLGl~wD~~~~qS--dr~~~y~~~a~~Li-~~G~AY~ 105 (523)
T PLN03233 68 EDLGKIEIKPDSVSFTS--DYFEPIRCYAIILI-EEGLAYM 105 (523)
T ss_pred HHHHHhCCCCCCCcccc--ccHHHHHHHHHHHH-HcCCeEe
Confidence 99999999999776655 57788888999999 9999996
|
|
| >PRK14895 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.3e-14 Score=147.73 Aligned_cols=280 Identities=16% Similarity=0.157 Sum_probs=158.3
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--.|+|||.|||||+|++++...++| +..| .-++++-.+|- ....+.+.+.+.+
T Consensus 5 vrtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG-----~fiLRIEDTD~----------------~R~~~~~~~~i~~ 61 (513)
T PRK14895 5 VITRFAPSPTGFLHIGSARTALFNYLFAR--HHNG-----KFLLRIEDTDK----------------ERSTKEAVEAIFS 61 (513)
T ss_pred eeEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCC-----EEEEEECCCCc----------------cccChHHHHHHHH
Confidence 45666899999999999999999999999 6677 66777655542 2334567889999
Q ss_pred HHhhcCcccc-ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcccc
Q psy2393 95 YLDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCEC 173 (576)
Q Consensus 95 ~l~~lgi~~d-~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~ 173 (576)
+|++||++|| -.|+.+ +..+...+...+|. ++|.+|. -||... -+...- ..-+.|+....|...|..
T Consensus 62 ~L~WLGl~wDe~py~QS--eR~~~Y~~~a~~Li-~~G~AY~-----CfCt~e--el~~~r--~~~~~~~~~~~Y~~~cr~ 129 (513)
T PRK14895 62 GLKWLGLDWNGEVIFQS--KRNNLYKEAALKLL-QNGKAYY-----CFTRQE--EIERQR--QQALENKQHFIFNSEWRD 129 (513)
T ss_pred HHHHcCCCCCCCceeEe--CcHHHHHHHHHHHH-HcCCeEE-----ecCcHH--HHHHHH--HhhhccCCCCCCChhhcc
Confidence 9999999999 445444 45677788888999 9999996 222221 110000 000011111112222210
Q ss_pred CCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCC
Q psy2393 174 CSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDA 253 (576)
Q Consensus 174 cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~ 253 (576)
.++++.. .+.+.. |=|++ +.- ....|...++..+. +-. ..+.|+.|-|..
T Consensus 130 ----~~~~~~~------~~~~~~------iR~k~--p~~---------~~~~~~D~v~G~~~-~~~--~~~~D~Vi~RsD 179 (513)
T PRK14895 130 ----KDPSIYP------TDIKPV------IRLKT--PRE---------GSITIHDTLQGEVV-IEN--SHIDDMVLLRAD 179 (513)
T ss_pred ----cChhhhh------cCCCee------EEEEc--CCC---------CceEEEeeccccee-ccc--ccCCCcEEEEeC
Confidence 1111000 011111 11222 100 00000000000000 000 234577777765
Q ss_pred CCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEe-eecCcchhHhHHHHHH
Q psy2393 254 PYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI-GKDIFYFHILFWPAIL 332 (576)
Q Consensus 254 ~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~-G~D~~~fh~~~~~a~l 332 (576)
|.|. |..+. .. ++. ...+.|++ |.||+. |+..+..++
T Consensus 180 ---G~pt-----------------Y~~a~--vV---------------DD~----~m~ithVIRG~d~~~-~t~~q~~l~ 217 (513)
T PRK14895 180 ---GTAT-----------------YMLAV--VV---------------DDH----DMGITHIIRGDDHLT-NAARQLAIY 217 (513)
T ss_pred ---CCcc-----------------hhhHH--HH---------------HHH----hcCCCEEEECchHhh-hHHHHHHHH
Confidence 4432 22110 00 000 01235555 999973 344445678
Q ss_pred HhcCCCCCcEEeeeccEE-eCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhh
Q psy2393 333 KFSGRKLPNNIFVHGFMT-INGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFIS 403 (576)
Q Consensus 333 ~~~~~~~p~~~~~~g~v~-~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~ 403 (576)
.++|.+.| .+.|+.+|. .+|+||||+.|. ..+.++.+.||.|++++-|++..+.....+-.|+.+++.+
T Consensus 218 ~aLG~~~p-~~~H~plv~~~~g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~ 287 (513)
T PRK14895 218 QAFGYAVP-SMTHIPLIHGADGAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAID 287 (513)
T ss_pred HHcCCCCC-eEEEEEeEEcCCCCccccccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHh
Confidence 88997765 678888888 499999999985 5889999999999999999996533222222466665543
|
|
| >cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=120.20 Aligned_cols=112 Identities=20% Similarity=0.177 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCC-ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhhhh
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGYLNM-KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIV-IEQTNFINIFFDQ 483 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~~~~-~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l-~~~~~~~n~y~~~ 483 (576)
.++++.++|+++|+.+++.+..++..|. ... .| +++++.+.++.+.+.++|++|+|+.+++.+ +++.+.+|.|++.
T Consensus 3 ~~~~~~~~~~l~R~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~~~Y~~~ 81 (117)
T cd07959 3 EEEANSAILRLERFYELAEELIETEGELEELTFID-RWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRER 81 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccccchhH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888999999999998865544432 222 25 999999999999999999999999999997 9999999999998
Q ss_pred cCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHc
Q psy2393 484 NKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFL 532 (576)
Q Consensus 484 ~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L 532 (576)
.+|| ....++.++++.++++|+||+||+||++|+.|
T Consensus 82 ~~~~-------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 82 GGAG-------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred hCcc-------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 8876 01245668999999999999999999999875
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-13 Score=145.19 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=75.7
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||.|||||+|++++...++| +..| .-++++-.+|-- ...+.+.+.|.+
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar--~~~G-----~fiLRieDtD~~----------------R~~~~~~~~i~~ 61 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFAR--HHGG-----KFILRIEDTDQE----------------RSTEEAEEAILE 61 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEEeCcCCCC----------------CCChHHHHHHHH
Confidence 56777899999999999999999999999 6677 767777655531 234667889999
Q ss_pred HHhhcCcccccc--------ccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNW--------YSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~--------~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||++||-- |+.+ ++.+..+++..+|. ++|.+|.
T Consensus 62 ~L~wlGl~~De~p~~~~~gpy~QS--~r~~~y~~~~~~L~-~~g~aY~ 106 (476)
T PRK01406 62 GLKWLGLDWDEGPDGGPYGPYRQS--ERLDIYKEYAEQLL-EEGKAYY 106 (476)
T ss_pred HHHHCCCCCCCCCccCCCCceehh--cCHHHHHHHHHHHH-HcCCeee
Confidence 999999999943 4433 56678888899999 9999996
|
|
| >TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-12 Score=140.29 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=77.2
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
.-+++--||+|||+||||||+++++.+.++| .+.| .-++.+ ||...+ .-...+.+.|
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~G-----~~iLRi---dDTDp~-------------R~~~e~~~~I 148 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAK--KYKG-----KLIIRF---DDTDPR-------------RVKPEAYDMI 148 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCC-----EEEEEe---CcCCcc-------------cccHHHHHHH
Confidence 3488899999999999999999999999997 5556 444444 444332 1123478899
Q ss_pred HHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 93 KKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 93 ~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
.++|+.||+.||..+.++ +|.+...++..+|. ++|.+|.
T Consensus 149 ~edL~wLGi~~d~~~~qS--d~~~~y~~~a~~Li-~~G~AY~ 187 (560)
T TIGR00463 149 LEDLDWLGVKGDEVVYQS--DRIEEYYDYCRKLI-EMGKAYV 187 (560)
T ss_pred HHHHHHcCCCCCcccccc--ccHHHHHHHHHHHH-HcCCcee
Confidence 999999999999877666 68888999999999 9999996
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). |
| >PLN02627 glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.7e-13 Score=140.18 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=75.1
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--.|+|||.|||||+|++++...++| +..| .-++++-.+|-. .....+.+.|.+
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG-----~fiLRIEDTD~~----------------R~~~e~~~~I~~ 102 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGG-----KFVLRIEDTDLA----------------RSTKESEEAVLR 102 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCC-----EEEEEeCcCCCC----------------CCChHHHHHHHH
Confidence 66677889999999999999999999999 7778 777777665531 233567789999
Q ss_pred HHhhcCcccccc---------ccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNW---------YSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~---------~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||++||-- |+.+ ++.+...++..+|. ++|.+|.
T Consensus 103 ~L~WLGl~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li-~~G~AY~ 148 (535)
T PLN02627 103 DLKWLGLDWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLL-ESGHVYP 148 (535)
T ss_pred HHHHcCCCCCcCcccCCCCCCeeee--ccHHHHHHHHHHHH-HcCCeee
Confidence 999999999842 3333 56677788888999 9999996
|
|
| >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=143.13 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=78.5
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||+|||||||+++....+|| .+.| .-++.+-.||- +.-...+.+.|.+
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar--~~~G-----~fiLRiEDTD~----------------~R~~~e~~~~I~~ 66 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYAR--KYGG-----KFILRIEDTDP----------------ERETPEAEDAILE 66 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHH--HhCC-----EEEEEecCCCC----------------CCCCHHHHHHHHH
Confidence 78888999999999999999999999999 6778 77888766653 1223466789999
Q ss_pred HHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|+.||++||- .++.+ ++-+...+...+|. ++|.+|.
T Consensus 67 ~L~WLGl~wde~~~~QS--~r~~~Y~~~~~~Li-~~G~AY~ 104 (472)
T COG0008 67 DLEWLGLDWDEGPYYQS--ERFDIYYEYAEKLI-EKGKAYV 104 (472)
T ss_pred HHHhcCCCCCCceeehh--hhHHHHHHHHHHHH-HCCCeEE
Confidence 99999999997 56544 67788888899999 9999996
|
|
| >PLN02907 glutamate-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=144.08 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=79.2
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
.-+++--||.|||.||||||+++++...++| ++.| .-++++-.+|- ..-...+.+.|
T Consensus 212 ~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G-----~~iLR~eDTdp----------------~r~~~e~~~~I 268 (722)
T PLN02907 212 GKVCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKG-----KLIVRFDDTNP----------------SKESDEFVENI 268 (722)
T ss_pred CceEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEecCCCC----------------CcCChHHHHHH
Confidence 3478899999999999999999999999999 6678 66666655443 12235678899
Q ss_pred HHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 93 KKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 93 ~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
.++|+.||++||..+.++ .+.+...+...+|. ++|.+|.
T Consensus 269 ~~dl~wLG~~~d~~~~qS--~r~~~y~~~a~~Li-~~G~aY~ 307 (722)
T PLN02907 269 LKDIETLGIKYDAVTYTS--DYFPQLMEMAEKLI-KEGKAYV 307 (722)
T ss_pred HHHHHHcCCCCCCccccc--ccHHHHHHHHHHHH-HcCCeee
Confidence 999999999999776655 57788889999999 9999996
|
|
| >PRK05347 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=138.04 Aligned_cols=95 Identities=14% Similarity=0.011 Sum_probs=73.2
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
-+++--+|.|||.|||||||++++...+|| +..| .-++++-.+|- ..-...+.+.|.
T Consensus 29 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G-----~~iLRieDTd~----------------~r~~~e~~~~I~ 85 (554)
T PRK05347 29 RVHTRFPPEPNGYLHIGHAKSICLNFGLAQ--DYGG-----KCNLRFDDTNP----------------EKEDQEYVDSIK 85 (554)
T ss_pred ceEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEECCCCC----------------CcCChHHHHHHH
Confidence 378888999999999999999999999999 5667 66666544432 223356788999
Q ss_pred HHHhhcCcccc-ccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 94 KYLDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 94 ~~l~~lgi~~d-~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
++|+.||+.|| ..+.++ .+.+...+...+|. ++|.+|.
T Consensus 86 ~dL~wLGi~~d~~~~~qS--~r~~~~y~~a~~Li-~~G~AY~ 124 (554)
T PRK05347 86 EDVRWLGFDWSGELRYAS--DYFDQLYEYAVELI-KKGKAYV 124 (554)
T ss_pred HHHHHcCCCCCCCceeee--cCHHHHHHHHHHHH-HcCCEee
Confidence 99999999995 444444 45555556667899 9999996
|
|
| >cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-13 Score=125.32 Aligned_cols=125 Identities=20% Similarity=0.185 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCC---CCccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHH
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFK-GYL---NMKWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINI 479 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~-~~~---~~~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~ 479 (576)
.+++++++|+++.+..-+.+ +. ... +.... .| +|+++++..+.+.+.++|++|+|+.+++.+++|+ .++|.
T Consensus 10 ~~~~~Kl~N~~rf~~~~~~~-~~~~~~~~~~~~~~~~D-~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~~~~l~n~ 87 (180)
T cd07960 10 AEAYRKIRNTFRFLLGNLND-FDPAKDAVPYEELLELD-RYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAF 87 (180)
T ss_pred HHHHHHHHHHHHHHHHcccC-CCcccccCChhhccHHH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 55799999998655432221 11 111 01122 25 9999999999999999999999999999999999 48899
Q ss_pred hhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 480 FFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 480 y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
|++..|||.+........+ ..+..++..+++.++++|+|||||+||+||+.||.
T Consensus 88 Yi~~~k~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~ 141 (180)
T cd07960 88 YLDIIKDRLYCDAKDSLER-RSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPG 141 (180)
T ss_pred HHHhcccceecCCCCCHHH-HHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccc
Confidence 9999999987432111211 33445677889999999999999999999999985
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >PTZ00402 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-12 Score=136.15 Aligned_cols=95 Identities=20% Similarity=0.207 Sum_probs=77.0
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
-+++--||.|||+||||||+++++...++| .+.| .-++++-.+| |..-...+.+.|.
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar--~~gG-----~~iLRiEDTD----------------p~R~~~e~~d~Il 108 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLAD--KYKG-----KLVFRFDDTN----------------PSKEKEHFEQAIL 108 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEEcCCC----------------CcccCHHHHHHHH
Confidence 378889999999999999999999999999 5677 6666654443 2233467789999
Q ss_pred HHHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 94 KYLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 94 ~~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
++|++||+.||. .+..+ ++.+...++..+|. ++|++|.
T Consensus 109 eDL~WLGl~wDe~~~~QS--dr~d~y~e~a~~Li-~~G~AY~ 147 (601)
T PTZ00402 109 DDLATLGVSWDVGPTYSS--DYMDLMYEKAEELI-KKGLAYC 147 (601)
T ss_pred HHHHHCCCCCCCceeecc--ccHHHHHHHHHHHH-HcCCEEE
Confidence 999999999985 54444 57788888999999 9999994
|
|
| >cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=122.82 Aligned_cols=90 Identities=21% Similarity=0.217 Sum_probs=69.0
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||+|||||+|++++...++| +..| .-++++-.+|- + .-...+.+.|.+
T Consensus 2 v~~RFAPsPtG~lHlG~~r~al~n~l~Ar--~~~G-----~~iLRieDtD~---~-------------R~~~~~~~~I~~ 58 (230)
T cd00418 2 VVTRFAPSPTGYLHIGHARTALFNFAFAR--KYGG-----KFILRIEDTDP---E-------------RSRPEYVESILE 58 (230)
T ss_pred ceEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----eEEEEeCcCCC---C-------------CCChHHHHHHHH
Confidence 35566899999999999999999999999 5677 66777655543 1 223567789999
Q ss_pred HHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCC
Q psy2393 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAK 130 (576)
Q Consensus 95 ~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g 130 (576)
+|++||+.||. .+..+ ++.+..++...+|. ++|
T Consensus 59 dL~wlGl~wd~~~~~QS--~r~~~y~~~~~~L~-~~g 92 (230)
T cd00418 59 DLKWLGLDWDEGPYRQS--DRFDLYRAYAEELI-KKG 92 (230)
T ss_pred HHHHcCCCCCCCeeehh--cCHHHHHHHHHHHH-HcC
Confidence 99999999996 44433 46666777788888 777
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind |
| >cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-11 Score=118.56 Aligned_cols=94 Identities=18% Similarity=0.080 Sum_probs=74.7
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||+||+||++++++...++| ...| .-++.+-.+|- + .....+.+.|.+
T Consensus 2 v~~RFAPsPtG~lHlG~~~~al~~~l~Ar--~~~G-----~~iLRieDtD~---~-------------R~~~~~~~~I~~ 58 (238)
T cd00807 2 VVTRFPPEPNGYLHIGHAKAILLNFGYAK--KYGG-----RCNLRFDDTNP---E-------------KEEEEYVDSIKE 58 (238)
T ss_pred ceEecCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEecCCCC---c-------------ccchHHHHHHHH
Confidence 45667899999999999999999999998 5567 65666544432 2 233567789999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|+.||+.||..+..+ ++.+..++...+|. ++|.+|.
T Consensus 59 dL~wlGl~wD~~~~QS--~r~~~Y~~~~~~L~-~~g~aY~ 95 (238)
T cd00807 59 DVKWLGIKPYKVTYAS--DYFDQLYEYAEQLI-KKGKAYV 95 (238)
T ss_pred HHHHcCCCCCCceecc--cCHHHHHHHHHHHH-HcCCeec
Confidence 9999999999554433 67788888999999 9999997
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PLN02859 glutamine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-12 Score=138.54 Aligned_cols=94 Identities=13% Similarity=-0.002 Sum_probs=72.0
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--||.|||.||||||+++++...++| .+.| .-++++-.+| |..-...|.+.|.+
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar--~~~G-----~~~LRieDTd----------------p~r~~~e~~~~I~e 321 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGG-----CCYLRFDDTN----------------PEAEKKEYIDHIEE 321 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEecCCC----------------CCccchHHHHHHHH
Confidence 67888999999999999999999999999 4567 6666655444 22234677899999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||+.+|..+.++ .|.+..-+...+|. ++|.+|.
T Consensus 322 dL~WLG~~~d~~~~qS--d~f~~~Y~~A~~Li-~~G~AY~ 358 (788)
T PLN02859 322 IVEWMGWEPFKITYTS--DYFQELYELAVELI-RRGHAYV 358 (788)
T ss_pred HHHHcCCCCCCccccc--HhHHHHHHHHHHHH-HcCCeEe
Confidence 9999999998766555 34433333556699 9999996
|
|
| >cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-12 Score=121.25 Aligned_cols=71 Identities=25% Similarity=0.222 Sum_probs=54.1
Q ss_pred EEEe-eecCcchhHhHHHHHHHhcCCCCCcEEeeeccEE-eCCccccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 313 YHFI-GKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMT-INGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 313 i~~~-G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~-~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
.|++ |.|+.. +.....+++.++|.+.|. +.++..+. .+|.|||||.|+ .+++.+.+.|+.+.+++.|++..
T Consensus 120 thViRG~D~~~-~t~~q~~l~~aLg~~~p~-~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~l 192 (239)
T cd00808 120 THVIRGEEHLS-STPKQILLYEALGWEPPK-FAHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALL 192 (239)
T ss_pred CEEEEChhhhh-ChHHHHHHHHHcCCCCCc-eEeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHc
Confidence 4444 788763 344445577888988774 45556654 489999999998 79999999999999999999874
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >TIGR00440 glnS glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.4e-12 Score=131.67 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=72.1
Q ss_pred EEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2393 16 VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKY 95 (576)
Q Consensus 16 v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 95 (576)
++--+|.|||.|||||||++++...++| +..| .-++++-.+|- ..-...+.+.|.++
T Consensus 2 ~tRFaPsPtG~LHiG~ar~al~n~~~A~--~~~G-----~~iLRieDTd~----------------~r~~~e~~~~I~~d 58 (522)
T TIGR00440 2 HTRFPPEPNGYLHIGHAKSICLNFGYAK--YYNG-----TCNLRFDDTNP----------------VKEDPEYVESIKRD 58 (522)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEEcCCCc----------------ccCChHHHHHHHHH
Confidence 4566899999999999999999999998 6677 66666655443 12335678899999
Q ss_pred HhhcCcccc-ccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 96 LDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 96 l~~lgi~~d-~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
|+.||+.|| ..+..+ ++.+...+...+|. ++|.+|.
T Consensus 59 L~wLG~~~d~~~~~qS--~~~~~~~~~a~~Li-~~G~AY~ 95 (522)
T TIGR00440 59 VEWLGFKWEGKIRYSS--DYFDELYRYAEELI-KKGLAYV 95 (522)
T ss_pred HHHcCCCCCCCceEcc--ccHHHHHHHHHHHH-HcCCEEe
Confidence 999999995 444444 45566667778999 9999996
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. |
| >cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=121.32 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=97.9
Q ss_pred cchhhHhhhhhHHHHHHHHHHHHHHHHHHHHH-cCCC---CC-Cccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2393 396 FNSQSFISCVNSDLIGKYINIASRSSSFIEKY-FKGY---LN-MKWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYI 469 (576)
Q Consensus 396 fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~-~~~~---~~-~~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~ 469 (576)
||.+.+... .++++++++|++..+.+..... +... .+ ..+. .| +|++++++.+.+.+.++|++|+|+.|++.
T Consensus 1 ~s~~~v~~~-~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D-~wil~~l~~~i~~~~~~~e~~~f~~a~~~ 78 (183)
T cd07961 1 FSEKGVREV-VRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLD-RWILSRLNSLIKEVTEEMEAYDLYTAVRA 78 (183)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhH-HHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 456665444 3558999999985554311111 1111 11 1222 26 99999999999999999999999999999
Q ss_pred HHHHH-HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 470 VIEQT-NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 470 l~~~~-~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
++.|+ ..++.|++.+|+..+.... .. .......++..++..++++|+||+||+||+||+.++.
T Consensus 79 l~~f~~~~~~~Y~e~~K~~~~~~~~-~~-~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~ 142 (183)
T cd07961 79 LLEFIDELTNWYIRRNRKRFWGEEG-DD-DKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRR 142 (183)
T ss_pred HHHHHHHhhhhHhhhchHHhcCCCC-ch-hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 99999 5568899998875543321 11 2233456777899999999999999999999999974
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-12 Score=111.27 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCC----ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 411 GKYINIASRSSSFIEKYFKGYLNM----KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 411 ~~~~n~~~R~~~~~~~~~~~~~~~----~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
....|+++|+.+++.+..++..|. ... .| .++++.+.++.+++.++|++++++++++.+++++..+|+|++...
T Consensus 7 ~~~~n~l~R~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~~~ 85 (117)
T cd07958 7 EGAYRFLNRVWRLVTELAEALAAPAAAAELSEED-KELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKKKDA 85 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhh-HHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcccc
Confidence 345577777777766654444332 222 25 999999999999999999999999999999999999999987544
Q ss_pred ccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHc
Q psy2393 486 PWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFL 532 (576)
Q Consensus 486 ~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L 532 (576)
| +..++.++++.++++|+||+|++|+++|+.|
T Consensus 86 p---------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 86 Q---------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred c---------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 3 3466678999999999999999999999875
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.1e-12 Score=137.68 Aligned_cols=94 Identities=18% Similarity=0.118 Sum_probs=75.6
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--||.|||.|||||++++++...++| +..| .-++++-.+|- ..-...+.+.|.+
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~--~~~G-----~~~LR~eDTd~----------------~r~~~e~~~~I~~ 88 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIAR--DYGG-----RCHLRMDDTNP----------------ETEDTEYVEAIKD 88 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEeCCCCC----------------CcCChHHHHHHHH
Confidence 78888999999999999999999999998 6677 66666544432 2233567889999
Q ss_pred HHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||++||. .+.++ ++.+...+...+|. ++|.+|.
T Consensus 89 dl~wLG~~wd~~~~~qS--~~~~~y~~~a~~Li-~~G~aY~ 126 (771)
T PRK14703 89 DVRWLGFDWGEHLYYAS--DYFERMYAYAEQLI-KMGLAYV 126 (771)
T ss_pred HHHHcCCCCCCCceEee--cCHHHHHHHHHHHH-HcCCccc
Confidence 99999999984 34444 57788888888999 9999996
|
|
| >cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.9e-12 Score=112.09 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC-C-CcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHhhh
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGYL-N-MKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTN--FINIFFD 482 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~~-~-~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~--~~n~y~~ 482 (576)
..++.+++|+...+.... ...+... + ......+.++++.+..+.+.+.++|++++++++++.+++++. .+|+|++
T Consensus 10 ~~~l~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~~~N~Yi~ 88 (135)
T cd07962 10 RNFCNKLWNAARFVLMNL-EDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWNDFCDWYLE 88 (135)
T ss_pred HHHHHHHHHHHHHHHHcc-cccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhHHHHH
Confidence 456888888875431110 0011100 0 111222289999999999999999999999999999999995 8999999
Q ss_pred hcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHc
Q psy2393 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFL 532 (576)
Q Consensus 483 ~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L 532 (576)
..+||....+ ..++..++.++.++++.++++|+||+||+|+++|+.|
T Consensus 89 ~~~pW~~~~~---~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 89 LVKPRLYGED---EEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HhhHHHcCCC---hHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 9999976422 2346677888999999999999999999999999875
|
This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. |
| >PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=118.53 Aligned_cols=90 Identities=29% Similarity=0.454 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhc
Q psy2393 440 NDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYL 517 (576)
Q Consensus 440 ~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll 517 (576)
|+|+++.+..+.+.+.++|++|+|+.|+..+++|+ .++|+|++..+||.+.++.... .+ +..++..+++.++++|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~--~~-~~~~l~~~l~~~~~ll 77 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES--RE-AQYTLYEILKILLILL 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH--HH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH--HH-HHHHHHHHHHHHhhcc
Confidence 38999999999999999999999999999999984 5679999999999887654322 23 6688889999999999
Q ss_pred cccccHHHHHHHHHc
Q psy2393 518 KPILPNLAKSVETFL 532 (576)
Q Consensus 518 ~Pi~P~~ae~i~~~L 532 (576)
+|||||+||++|+.|
T Consensus 78 ~P~~P~~aEeiw~~l 92 (153)
T PF08264_consen 78 SPFMPFIAEEIWQRL 92 (153)
T ss_dssp TTTSHHHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHh
Confidence 999999999999887
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A .... |
| >TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.4e-12 Score=123.87 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=73.3
Q ss_pred EcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2393 17 TTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYL 96 (576)
Q Consensus 17 ~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 96 (576)
+--.|+|||.|||||+|++++...++| +..| .-++.+-.+|..- ..+.+.+.|.++|
T Consensus 3 ~RFAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG-----~~iLRiEDtD~~R----------------~~~~~~~~I~~dL 59 (272)
T TIGR03838 3 GRFAPSPSGPLHFGSLVAALGSYLDAR--AHGG-----RWLVRIEDLDPPR----------------EVPGAADDILRTL 59 (272)
T ss_pred eeeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEeCcCCCCC----------------CChHHHHHHHHHH
Confidence 445799999999999999999999999 6678 7777776665421 2245678899999
Q ss_pred hhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 97 DGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 97 ~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
++||++||- .+..+ ++.+.-.++..+|. ++|.+|.
T Consensus 60 ~wLGl~wDe~~~~QS--~r~~~Y~~~~~~L~-~~G~aY~ 95 (272)
T TIGR03838 60 EAYGLHWDGEVVYQS--QRHALYQAALDRLL-AAGLAYP 95 (272)
T ss_pred HHcCCCCCCCeeeee--CCHHHHHHHHHHHH-HcCCEEe
Confidence 999999994 33433 56778888889999 9999996
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. |
| >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.5e-12 Score=124.22 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=74.1
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--.|+|||+|||||++++++...++| ...| .-++++-.+|. + .....+.+.|.+
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar--~~~G-----~~iLRiEDtD~---~-------------R~~~~~~~~I~~ 62 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAALGSWLDAR--AHGG-----RWLLRIEDIDP---P-------------REVPGAADAILA 62 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEEECcCCC---C-------------ccchHHHHHHHH
Confidence 66777899999999999999999999998 5567 66666654443 1 223566789999
Q ss_pred HHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||++||- .+..+ ++.+..+++..+|. ++|.+|.
T Consensus 63 dL~wlGl~wDe~~~~QS--~r~~~Y~~~~~~L~-~~G~aY~ 100 (299)
T PRK05710 63 DLEWLGLHWDGPVLYQS--QRHDAYRAALDRLR-AQGLVYP 100 (299)
T ss_pred HHHHCCCCCCCCceEee--ccHHHHHHHHHHHH-HCCCcee
Confidence 99999999993 44433 56778888899999 9999995
|
|
| >PTZ00437 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.2e-11 Score=126.05 Aligned_cols=94 Identities=16% Similarity=-0.023 Sum_probs=74.9
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|.|||+||||||+++++...++| +..| .-++.+-.+| |..-...+.+.|.+
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar--~~gG-----~~iLRiEDTD----------------p~r~~~e~~~~I~~ 108 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSAR--AHGG-----KCYLRYDDTN----------------PETEEQVYIDAIME 108 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEECCCC----------------ccccChHHHHHHHH
Confidence 67788999999999999999999999998 5667 6666665444 22344677899999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|+.||++||..+.++ .|.+...+...+|. ++|.+|.
T Consensus 109 dL~wLGi~~D~~~~qS--~y~~~~ye~A~~Li-~~G~AY~ 145 (574)
T PTZ00437 109 MVKWMGWKPDWVTFSS--DYFDQLHEFAVQLI-KDGKAYV 145 (574)
T ss_pred HHHHcCCCCCCCCcCc--hhHHHHHHHHHHHH-HcCCEEE
Confidence 9999999999766544 56666667778899 9999996
|
|
| >PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-11 Score=123.47 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=68.5
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||+|||||++++++...++| +..| .-++.+-.+|.. .....+.+.|.+
T Consensus 2 v~tRFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G-----~~iLRieDtD~~----------------R~~~~~~~~i~~ 58 (314)
T PF00749_consen 2 VRTRFAPSPTGYLHIGHARTALLNYLFAR--KYGG-----KFILRIEDTDPE----------------RCRPEFYDAILE 58 (314)
T ss_dssp -EEEE---SSSS-BHHHHHHHHHHHHHHH--HTTS-----EEEEEEETSSTT----------------TCHHHHHHHHHH
T ss_pred eeEeeCCCCCCCcccchhHHHHHHHHHHh--ccCc-----eEEEeccccccc----------------cchhhHHHHHHh
Confidence 34556799999999999999999999999 7778 777777665542 122566788999
Q ss_pred HHhhcCcccc-ccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d-~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|+.||+.|| ..+..+ .+.+..+++..+|. ++|.+|.
T Consensus 59 ~L~wlGl~~D~~~~~QS--~r~~~Y~~~~~~L~-~~g~aY~ 96 (314)
T PF00749_consen 59 DLRWLGLEWDYGPYYQS--DRLEIYQEAAEKLI-DKGKAYP 96 (314)
T ss_dssp HHHHHT---STCEEEGG--GGHHHHHHHHHHHH-HTTSEEE
T ss_pred heeEEEEecCCeEEeHH--HHHHHHHHHHHHHh-hcCCCcc
Confidence 9999999998 455544 67788888999999 9999986
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A .... |
| >cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.5e-09 Score=90.04 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC----ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhc
Q psy2393 410 IGKYINIASRSSSFIEKYFKGYLNM----KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQN 484 (576)
Q Consensus 410 ~~~~~n~~~R~~~~~~~~~~~~~~~----~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~ 484 (576)
..+++|.+.|+.+++.++..+..+. ... .| .|+++.+..+.+.+.++|++|+++.+++.+++|+...|+|++..
T Consensus 7 ~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~~~ 85 (117)
T cd07375 7 ARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEAD-RELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLDEL 85 (117)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhh-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHHHh
Confidence 3456777788888776665443332 112 25 89999999999999999999999999999999998889999999
Q ss_pred CccccccCcccHHHHHHHHHHHHHHHHHHHHhccccc
Q psy2393 485 KPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPIL 521 (576)
Q Consensus 485 k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~ 521 (576)
+||.+.++ ....+..++.++++.++++|+|||
T Consensus 86 ~pw~~~~~-----~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 86 KPALQTEE-----LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred hHHHcCch-----hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99987542 223445677789999999999996
|
This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. |
| >KOG1149|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-06 Score=87.87 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=69.6
Q ss_pred EcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2393 17 TTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYL 96 (576)
Q Consensus 17 ~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 96 (576)
+---|.|||-||||-+|+++...++|| +..| .-++.+-.+|-- .++....+.+.++|
T Consensus 36 vRFAPSPTGfLHlGgLRTALfNYLfAr--k~gG-----kFiLRiEDTDq~----------------R~v~gs~e~i~~~L 92 (524)
T KOG1149|consen 36 VRFAPSPTGFLHLGGLRTALFNYLFAR--KKGG-----KFILRIEDTDQK----------------RLIRGSEEAIYEDL 92 (524)
T ss_pred EeecCCCCcceehhhHHHHHHHHHHHH--hcCC-----eEEEEecccccc----------------ccccchHHHHHHHH
Confidence 344589999999999999999999999 7778 778887666531 23344457899999
Q ss_pred hhcCccccccccC-------CChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 97 DGFYIKFDNWYST-------DSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 97 ~~lgi~~d~~~~t-------~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
..+||.||-=.+. ...+..+.-++..++|. +.|.+|+
T Consensus 93 ~w~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll-~sG~AYr 136 (524)
T KOG1149|consen 93 KWANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLL-ESGHAYR 136 (524)
T ss_pred HhcCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHH-hcCCeeE
Confidence 9999999832211 12244555667778899 9999997
|
|
| >cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-07 Score=83.64 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=87.5
Q ss_pred CChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcC-CC----CCCc-ccC-ChHHHHHH
Q psy2393 374 MNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK-GY----LNMK-WVK-DNDTFLSK 446 (576)
Q Consensus 374 ~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~-~~----~~~~-~~~-d~~~l~~~ 446 (576)
+|.|++||++++..+ ..+++|+++.+.+.. ++...++.+++.|+.+++.+... .. +... +.. ++..|+..
T Consensus 3 i~~~a~~~~~l~~~~--~~~~~fd~~~~~~~~-~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~ 79 (156)
T cd07956 3 VGVGAVKYQDLSNKR--IKDYTFDWERMLSFE-GDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILL 79 (156)
T ss_pred cchhHHHHHHHhcCC--CCCceecHHHHHhhc-CCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHH
Confidence 789999999999844 467899999876554 44577899999999999988542 11 1111 111 22778999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCc
Q psy2393 447 LRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKP 486 (576)
Q Consensus 447 l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~ 486 (576)
+..+++.+..++.+.+++.++.++.+++..++.||+.++.
T Consensus 80 l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~V 119 (156)
T cd07956 80 LAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPV 119 (156)
T ss_pred HHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999998764
|
This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA. |
| >KOG1147|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.2e-06 Score=85.76 Aligned_cols=98 Identities=21% Similarity=0.178 Sum_probs=76.0
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+|+--||-|+|.||||||..+++.--++- +++| . .++-+||.- |..=-+++...|.+
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLNqYfa~--~~~G-----~---LIvRFDDTN-------------PaKE~~eFe~~Ile 257 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLNQYFAQ--AYQG-----K---LIVRFDDTN-------------PAKENEEFEDVILE 257 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHHHHHHH--hcCc-----e---EEEEecCCC-------------cchhhHHHHHHHHH
Confidence 67788999999999999998877666654 5566 3 333345532 33334778899999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEeccee
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKIN 138 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~ 138 (576)
++..|||.+|.+..|+ .|-+.+...-.+|. +.|.+|..+.+
T Consensus 258 Dl~~LgIkpd~~TyTS--DyF~~i~dycv~li-keGKAYvDDTp 298 (712)
T KOG1147|consen 258 DLSLLGIKPDRVTYTS--DYFDEIMDYCVKLI-KEGKAYVDDTP 298 (712)
T ss_pred HHHHhCcCcceeeech--hhHHHHHHHHHHHH-hcCcccccCCc
Confidence 9999999999998877 57888888889999 99999987644
|
|
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0014 Score=67.93 Aligned_cols=77 Identities=23% Similarity=0.208 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
.++++.|++|. -|+|.+||||.. ....+.++++ .| +++.+.. .|.|..- .+ +.+++++ +++.
T Consensus 63 ~~~~~~iytG~-~PSG~lHLGh~~---~~~~~~~lQ~-~g-----~~~~i~I-aD~ha~~-----~~-~~~~e~~-~~~~ 124 (368)
T PRK12285 63 NGKPFAVYTGF-MPSGPMHIGHKM---VFDELKWHQE-FG-----ANVYIPI-ADDEAYA-----AR-GLSWEET-REWA 124 (368)
T ss_pred cCCCeEEEEcc-CCCCCccHHHHH---HHHHHHHHHh-cC-----CCEEEEe-cchHHHh-----cC-CCCHHHH-HHHH
Confidence 44566665543 666999999964 3444555555 78 8876554 3544321 11 4566544 4555
Q ss_pred HHHHHHHhhcCcccc
Q psy2393 90 SNRKKYLDGFYIKFD 104 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d 104 (576)
.+...++.++|++++
T Consensus 125 ~~~~~~~lA~G~Dp~ 139 (368)
T PRK12285 125 YEYILDLIALGFDPD 139 (368)
T ss_pred HHHHHHHHHhCCCcc
Confidence 557788889999887
|
|
| >PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0001 Score=75.30 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=42.6
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
+.++.. --|+|.+||||..+.+.. ..+.+...| .++.+.. .|-|-+- . ..++.++ +++....
T Consensus 4 ~~v~sG--iqPTG~~HLGnylga~k~--~~~lq~~~~-----~~~~~~I-ADlHalt---~----~~~~~~l-~~~~~~~ 65 (332)
T PRK12556 4 KIMLTG--IKPTGYPHLGNYIGAIKP--ALQMAKNYE-----GKALYFI-ADYHALN---A----VHDPEQF-RSYTREV 65 (332)
T ss_pred CEEEEE--ECCCCcchHHHHHHHHHH--HHHHHHhcC-----CeEEEEE-echhhcc---C----CCCHHHH-HHHHHHH
Confidence 344454 356699999997775432 223334456 5555443 3444321 0 1255544 4555667
Q ss_pred HHHHhhcCcccc
Q psy2393 93 KKYLDGFYIKFD 104 (576)
Q Consensus 93 ~~~l~~lgi~~d 104 (576)
..++-..|++++
T Consensus 66 ~~~~lA~GlDP~ 77 (332)
T PRK12556 66 AATWLSLGLDPE 77 (332)
T ss_pred HHHHhheeeccc
Confidence 778889999987
|
|
| >TIGR00233 trpS tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0011 Score=67.77 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=39.6
Q ss_pred CCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q psy2393 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFY 100 (576)
Q Consensus 21 P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 100 (576)
--|+|.+||||..+.+..= ++...| +++.+... |.|-.-. ..+..+. -.+.....+..++...|
T Consensus 9 ~~PTG~~HlG~~l~~~~~~----~~~q~~-----~~~~i~Ia-D~ha~t~-----~~~~~~~-~~~~~~~~~~~~~lA~G 72 (328)
T TIGR00233 9 IQPSGKMHLGHYLGAIQTK----WLQQFG-----VELFICIA-DLHAITV-----KDNTDPD-ALRKAREELAADILAVG 72 (328)
T ss_pred eCCCcHhHHHHHHHHHHHH----HHHhCC-----CCEEEEee-cchhhcC-----CCCCCHH-HHHHHHHHHHHHHHHhC
Confidence 4777999999977754433 333568 88766543 4443221 0111232 23444455667777899
Q ss_pred cccc
Q psy2393 101 IKFD 104 (576)
Q Consensus 101 i~~d 104 (576)
++++
T Consensus 73 lDp~ 76 (328)
T TIGR00233 73 LDPK 76 (328)
T ss_pred cChh
Confidence 9987
|
This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model. |
| >PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00014 Score=63.02 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCC-----cc--cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 413 YINIASRSSSFIEKYFKGYLNM-----KW--VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 413 ~~n~~~R~~~~~~~~~~~~~~~-----~~--~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
+.++++|+.+++++........ .. .+++..|+..+..++..+..++++++++.+++++.+++..+|+||+.++
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~ 80 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVR 80 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3578889999999864332211 11 1122789999999999999999999999999999999999999999987
Q ss_pred cc
Q psy2393 486 PW 487 (576)
Q Consensus 486 ~~ 487 (576)
..
T Consensus 81 I~ 82 (119)
T PF05746_consen 81 IL 82 (119)
T ss_dssp ST
T ss_pred cc
Confidence 54
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A. |
| >PLN02486 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0095 Score=61.93 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCCCCCC-cccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANG-ELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG-~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~ 87 (576)
+.++++++++|- -|+| .+||||+-+ ...++.+++..| ..+... -+|+ +....+ +.+.++. ++
T Consensus 69 e~~~~~~vYtG~-~PSg~~lHlGHlv~---~~~~~~lQ~~~~-----~~~~I~-iaD~-----e~~~~~-~~~~e~i-~~ 131 (383)
T PLN02486 69 EKGEKFYLYTGR-GPSSEALHLGHLIP---FMFTKYLQDAFK-----VPLVIQ-LTDD-----EKFLWK-NLSVEES-QR 131 (383)
T ss_pred hcCCCeEEEeCC-CCCCccccHHHHHH---HHHHHHHHHhCC-----CeEEEE-ecCH-----HHHhhc-CCCHHHH-HH
Confidence 446677777754 8889 599999544 444444444445 554444 3344 333333 5666554 55
Q ss_pred HHHHHHHHHhhcCcccc
Q psy2393 88 ISSNRKKYLDGFYIKFD 104 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~d 104 (576)
+..+..+++.++|++++
T Consensus 132 ~~~en~~~iiA~G~dp~ 148 (383)
T PLN02486 132 LARENAKDIIACGFDVE 148 (383)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 55667777778999876
|
|
| >cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00055 Score=68.16 Aligned_cols=69 Identities=13% Similarity=-0.006 Sum_probs=40.0
Q ss_pred EEEeeecCcchhHhHHHHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+..+|.||...+..- .-+.... +.+.|..+...-...++|.|||||.+|.++...+. -+++.++=.+.+
T Consensus 156 ~vp~G~DQ~~~i~l~-rdla~r~n~~~~p~~l~~p~l~~l~G~KMSKS~~~~i~l~~~~---dsp~~i~~ki~~ 225 (273)
T cd00395 156 IQPGGSDQWGNITLG-RELARRFNGFTIAEGLTIPLVTKLDGPKFGKSESGPKWLDTEK---TSPYEFYQFWIN 225 (273)
T ss_pred EEEecHHHHHHHHHH-HHHHHHhCCCCCCeEEeeccccCCCCCcCCCCCCCCccccccC---CCHHHHHHHHHc
Confidence 778899996433211 1122233 34455555543333339999999999998765543 235555555544
|
Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00027 Score=70.56 Aligned_cols=88 Identities=14% Similarity=0.216 Sum_probs=50.6
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCc-ceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSR-QVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~-~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
+.|.+| --|+|.+||||..+.+.. ++....+ + ++.+.. .|.|-.-+ .+..+++-.+....+.
T Consensus 6 ~~vlSG-~~PSG~lHLGny~ga~~~----~v~~q~~-----~~~~f~~I-aDlha~t~------~~~~~~~~l~~~~~e~ 68 (314)
T COG0180 6 FRVLSG-IQPSGKLHLGNYLGAIRN----WVLLQEE-----YYECFFFI-ADLHAITV------RQDPTEEDLRQATREV 68 (314)
T ss_pred ceEEec-CCCCCCcchhHhHHHHHH----HHHHhcc-----cCceEEEE-ecHHHhhc------CCCChHHHHHHHHHHH
Confidence 344443 367799999999886433 2333333 3 554432 45554331 1222334556667777
Q ss_pred HHHHhhcCcccc---ccccCCChhhHHHH
Q psy2393 93 KKYLDGFYIKFD---NWYSTDSIENIDLV 118 (576)
Q Consensus 93 ~~~l~~lgi~~d---~~~~t~~~~~~~~v 118 (576)
..++-++|++++ .|.++..+++.+..
T Consensus 69 ~a~~LA~GiDP~k~~if~QS~v~e~~eLa 97 (314)
T COG0180 69 AADYLAVGLDPEKSTIFLQSEVPEHAELA 97 (314)
T ss_pred HHHHHHhccCccccEEEEccCchHHHHHH
Confidence 888889999987 35555555544443
|
|
| >PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00042 Score=72.86 Aligned_cols=69 Identities=13% Similarity=-0.002 Sum_probs=43.2
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEE-eCCccccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMT-INGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~-~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
+.++|.||...+..- .-+....+...| ..+++-++. .+|.|||||.||.|++.| +. .+|..++=++.+.
T Consensus 189 iq~gG~DQ~~ni~~g-rdl~~r~~~~~~-~~lt~PlL~g~dG~KMsKS~~naI~L~d--~~-tsp~~i~qki~~~ 258 (410)
T PRK13354 189 LQIGGTDQWGNILMG-RDLQRKLEGEEQ-FGLTMPLLEGADGTKMGKSAGGAIWLDP--EK-TSPYEFYQFWMNI 258 (410)
T ss_pred EEEecHHHHHHHHHH-HHHHHHhCCCCc-eEeccCCccCCCCCccCCCCCCceeccC--CC-CCHHHHHHHHHcC
Confidence 778999996433211 112333444444 333343443 389999999999999988 44 6677777776653
|
|
| >PRK12284 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00056 Score=71.24 Aligned_cols=89 Identities=10% Similarity=0.049 Sum_probs=51.4
Q ss_pred CCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q psy2393 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFY 100 (576)
Q Consensus 21 P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 100 (576)
-.|+|.+||||..+.+.. ..+.+...| +++.|.. .|-|-.- ...+|.++.+. ..++..++...|
T Consensus 9 iqPTG~lHLGNylGaik~--~v~lq~q~~-----~~~~~~I-ADlHAlT-------~~~dp~~lr~~-~~e~aa~~LA~G 72 (431)
T PRK12284 9 ITTTGTPHLGNYAGAIRP--AIAASRQPG-----VESFYFL-ADYHALI-------KCDDPARIQRS-TLEIAATWLAAG 72 (431)
T ss_pred ecCCCcchHHHHHHHHHH--HHHHHHhCC-----CcEEEEe-echhhcc-------CCCCHHHHHHH-HHHHHHHHHHhC
Confidence 478899999997776542 233344458 8875543 3444332 12355554433 455778888999
Q ss_pred cccc---ccccCCChhhHHHHHHHHHHHH
Q psy2393 101 IKFD---NWYSTDSIENIDLVQKIYDTLY 126 (576)
Q Consensus 101 i~~d---~~~~t~~~~~~~~v~~~~~~L~ 126 (576)
++++ .|.++.-+++. ...+++..+-
T Consensus 73 lDPek~~if~QSdvpeh~-EL~wiL~~it 100 (431)
T PRK12284 73 LDPERVTFYRQSDIPEIP-ELTWLLTCVA 100 (431)
T ss_pred CCccceEEEECCcchhHH-HHHHHHHhhh
Confidence 9987 34444445443 3344444444
|
|
| >PRK08560 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0014 Score=67.23 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=45.4
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
++++.|++| --|+|.+||||+.. .-.+.++++ .| +++.+..+ |.|..-.- ..++. -+++...
T Consensus 28 ~~~~~v~~G-~~PTG~lHLG~~~~---~~~~~~lq~-~g-----~~~~i~Ia-D~ha~~~~------~~~~~-~i~~~~~ 89 (329)
T PRK08560 28 KEEPKAYIG-FEPSGKIHLGHLLT---MNKLADLQK-AG-----FKVTVLLA-DWHAYLND------KGDLE-EIRKVAE 89 (329)
T ss_pred CCCCEEEEc-cCCCCcchhhhhHH---HHHHHHHHH-CC-----CeEEEEEc-cchhhcCC------CCCHH-HHHHHHH
Confidence 344444443 47779999999653 223555555 58 87765543 44433211 02443 4456666
Q ss_pred HHHHHHhhcCcccc
Q psy2393 91 NRKKYLDGFYIKFD 104 (576)
Q Consensus 91 ~~~~~l~~lgi~~d 104 (576)
.+..++.++|++++
T Consensus 90 ~~~~~~~A~G~dp~ 103 (329)
T PRK08560 90 YNKKVFEALGLDPD 103 (329)
T ss_pred HHHHHHHHcCCChh
Confidence 78888999999876
|
|
| >PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0013 Score=69.19 Aligned_cols=69 Identities=22% Similarity=0.129 Sum_probs=43.2
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
+..+|.||.. |...=.-+....+.. +...++.-++.. +|+|||||.||.|++.| +. .+|..++=++.+.
T Consensus 191 i~~gG~DQ~~-ni~~grdla~r~~~~-~~~~l~~plL~~~~G~KMsKS~~naI~L~d--~~-tsp~~i~qki~~~ 260 (408)
T PRK05912 191 LQLGGSDQWG-NILSGRDLQRRYGGK-PQFGLTMPLLTGLDGKKMGKSEGNAVWLDE--EK-TSPYEMYQKWMNI 260 (408)
T ss_pred EEeccHHHHH-HHHHHHHHHHHhCCC-CeEEEecCCcCCCCCCcccCCCCCceeCCC--CC-CCHHHHHHHHhcC
Confidence 7788999974 322211122333432 223334444433 89999999999999988 44 6778888777663
|
|
| >cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0022 Score=64.20 Aligned_cols=68 Identities=19% Similarity=0.367 Sum_probs=43.0
Q ss_pred CCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q psy2393 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFY 100 (576)
Q Consensus 21 P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 100 (576)
--|+|.+||||..+.+.. +. +++..| +++.+..+ |.|..-. ...+++ -++++...+.+++.++|
T Consensus 6 ~~PTG~lHLG~~~~al~~--~~-~lQ~ag-----~~~~~~Ia-D~ha~t~------~~~~~~-~~~~~~~~~~~~~lA~G 69 (280)
T cd00806 6 IQPSGSLHLGHYLGAFRF--WV-WLQEAG-----YELFFFIA-DLHALTV------KQLDPE-ELRQNTRENAKDYLACG 69 (280)
T ss_pred eCCCchhhHHHHHHHHHH--HH-HHHhCC-----CCEEEEec-chHHHhC------CCCCHH-HHHHHHHHHHHHHHHcC
Confidence 357799999998885432 22 223348 88776653 4454421 113454 44566677888888999
Q ss_pred cccc
Q psy2393 101 IKFD 104 (576)
Q Consensus 101 i~~d 104 (576)
++++
T Consensus 70 ~dp~ 73 (280)
T cd00806 70 LDPE 73 (280)
T ss_pred CCcc
Confidence 9885
|
Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding |
| >PTZ00126 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=68.93 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=43.5
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
+++.|+.| --|+|.+|||| ..+..--+.++ ...| ++|.+..+ |-|..-. .+.|.++.++ +.....
T Consensus 65 ~~~~v~~G-~~PTG~lHLG~--g~i~~~~~~~l-q~~G-----~~v~~~Ia-D~hA~~~----~~~g~~l~~i-~~~~~~ 129 (383)
T PTZ00126 65 ERPICYDG-FEPSGRMHIAQ--GILKAINVNKL-TKAG-----CVFVFWVA-DWFALLN----NKMGGDLEKI-RKVGEY 129 (383)
T ss_pred CCCEEEEE-ECCCCcccccc--hHhHhHHHHHH-HhCC-----CeEEEEEc-cceeecC----CCCCCCHHHH-HHHHHH
Confidence 44344443 47779999999 22222223333 4568 88876654 2222210 1233344443 555566
Q ss_pred HHHHHhhcCcccc
Q psy2393 92 RKKYLDGFYIKFD 104 (576)
Q Consensus 92 ~~~~l~~lgi~~d 104 (576)
+.+.+..+|++++
T Consensus 130 ~~~~~~A~GlDp~ 142 (383)
T PTZ00126 130 FIEVWKAAGMDMD 142 (383)
T ss_pred HHHHHHHhCCCcc
Confidence 7778889999876
|
|
| >PRK00927 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.002 Score=66.19 Aligned_cols=66 Identities=23% Similarity=0.393 Sum_probs=39.3
Q ss_pred CCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q psy2393 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFY 100 (576)
Q Consensus 21 P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 100 (576)
--|+|.+||||..+.+.. +.++++ + +++.++.+ |-|-.-. ..++++ +..+......++..+|
T Consensus 8 ~~PTG~lHLG~~~g~~~~--~~~lQ~--~-----~~~~~~Ia-D~ha~t~-------~~~~~~-i~~~~~~~~~~~lA~G 69 (333)
T PRK00927 8 IQPTGKLHLGNYLGAIKN--WVELQD--E-----YECFFCIA-DLHALTV-------PQDPEE-LRENTRELAADYLACG 69 (333)
T ss_pred eCCCccchHHhHHHHHHH--HHHHHh--c-----CCeEEEEe-cHHHHhC-------CCCHHH-HHHHHHHHHHHHHeEc
Confidence 356799999998876533 333333 4 56655542 3332221 124443 3455566788888999
Q ss_pred cccc
Q psy2393 101 IKFD 104 (576)
Q Consensus 101 i~~d 104 (576)
++++
T Consensus 70 lDp~ 73 (333)
T PRK00927 70 IDPE 73 (333)
T ss_pred cChh
Confidence 9886
|
|
| >smart00836 DALR_1 DALR anticodon binding domain | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.015 Score=50.40 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHcC-C-CCCC------c-c-cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 414 INIASRSSSFIEKYFK-G-YLNM------K-W-VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 414 ~n~~~R~~~~~~~~~~-~-~~~~------~-~-~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
++++.|+.+++++... + .++. . + .++...|+..+..+.+.+..++.+.+++.++.++.+++..+|.||+.
T Consensus 2 qY~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~~ 81 (122)
T smart00836 2 QYAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYNK 81 (122)
T ss_pred cHHHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHcc
Confidence 4677899999887542 1 2221 1 1 11227788999999999999999999999999999999999999998
Q ss_pred cCcc
Q psy2393 484 NKPW 487 (576)
Q Consensus 484 ~k~~ 487 (576)
++..
T Consensus 82 v~V~ 85 (122)
T smart00836 82 CRVL 85 (122)
T ss_pred Cccc
Confidence 8743
|
This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505. |
| >KOG1148|consensus | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0045 Score=65.34 Aligned_cols=94 Identities=19% Similarity=0.130 Sum_probs=64.0
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--||-|||.|||||+-..-+.==+++ .+.| |.|+.- ||. .|+.=.++|-..|++
T Consensus 249 V~TRFPPEPNG~LHIGHaKAInvNFgyAk--~~~G-------~cyLRf-DDT-------------NPEkEee~yf~sI~e 305 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKAINVNFGYAK--AHGG-------VCYLRF-DDT-------------NPEKEEEEYFESIKE 305 (764)
T ss_pred eEEeCCCCCCceeeecchhheeechhhhh--hhCC-------eEEEec-CCC-------------CcchhhHHHHHHHHH
Confidence 77889999999999999986433322333 2334 555543 322 244444788899999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
.-.+||..+-.. |.+..|-+..-.+-..|. ++|++|.
T Consensus 306 ~V~WLG~~P~kv--TysSDyFdqLy~~av~LI-rkG~AYV 342 (764)
T KOG1148|consen 306 MVAWLGFEPYKV--TYSSDYFDQLYELAVELI-RKGKAYV 342 (764)
T ss_pred HHHHhCCCceee--ecchhHHHHHHHHHHHHH-hcCceeE
Confidence 999999987444 334456666666666788 8999996
|
|
| >COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0069 Score=62.97 Aligned_cols=52 Identities=19% Similarity=0.117 Sum_probs=33.7
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccCh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISP 366 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~ 366 (576)
+.++|.||-+.|..-- -++..+|. .+...+++-++.. +|.|||||.||.+|.
T Consensus 183 lq~GG~DQ~~ni~~gr-dl~rr~g~-~~~~~lt~PLL~~ldG~KmgKs~~~a~~~ 235 (401)
T COG0162 183 LQLGGSDQWGNILAGR-DLIRRLGQ-KKVVGLTTPLLTGLDGKKMGKSEGGAVWL 235 (401)
T ss_pred hhcCChHHHHHHHHHH-HHHHHhCC-CCeEEEEeccccCCCCCcccccCCCceEc
Confidence 8899999955443221 13344565 3345566666655 999999999995544
|
|
| >PTZ00348 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.075 Score=59.21 Aligned_cols=78 Identities=15% Similarity=0.045 Sum_probs=40.4
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
+++.+++ +--|||.+||||. +++=+-.+-+...| ++|.+..+ |-|..- ..+.|.+.++... ....
T Consensus 31 ~~~rv~s-Gi~PTG~lHLGng---~~~aik~~~~~q~g-----~~~~~lIA-D~HAlt----~~~~~~~l~~i~~-~~~~ 95 (682)
T PTZ00348 31 PLIRCYD-GFEPSGRMHIAQG---IFKAVNVNKCTQAG-----CEFVFWVA-DWFALM----NDKVGGELEKIRI-VGRY 95 (682)
T ss_pred CCCEEEE-eeCCCCcCeeccH---HHHHHHHHHHHhCC-----CeEEEEEc-chhhhc----CCCCCCCHHHHHH-HHHH
Confidence 3444443 3478899999993 22211111223468 88765532 222211 1223333433322 2345
Q ss_pred HHHHHhhcCcccc
Q psy2393 92 RKKYLDGFYIKFD 104 (576)
Q Consensus 92 ~~~~l~~lgi~~d 104 (576)
+.+.+..+|++++
T Consensus 96 ~~~~~lA~GlDpe 108 (682)
T PTZ00348 96 LIEVWKAAGMDMD 108 (682)
T ss_pred HHHHHHHcCCCcc
Confidence 6677889999887
|
|
| >cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.1 Score=51.90 Aligned_cols=68 Identities=22% Similarity=0.049 Sum_probs=42.2
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
+..+|.||...+. +-.-+....+...| ..++|.++.. +|+|||||.+|.+| ..+. -+++.++=.+.+.
T Consensus 154 l~~~G~DQ~~~i~-~~rd~a~r~~~~~~-~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~---dsp~~i~~Ki~~a 222 (269)
T cd00805 154 LQLGGSDQRGNIT-LGRDLIRKLGYKKV-VGLTTPLLTGLDGGKMSKSEGNAIW-DPVL---DSPYDVYQKIRNA 222 (269)
T ss_pred eeEecHHHHHHHH-HHHHHHHHhCCCCc-EEEeeccccCCCCCcccCCCCCccc-ccCC---CCHHHHHHHHHcC
Confidence 7789999974332 21112333454433 4556666654 99999999999987 3332 3566776665553
|
Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.07 Score=53.94 Aligned_cols=55 Identities=22% Similarity=0.011 Sum_probs=33.1
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCC----CCcEEeeeccEEe-CCc-cccccCCC-ccChhHH
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRK----LPNNIFVHGFMTI-NGK-KMSKSNKI-GISPLYY 369 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~----~p~~~~~~g~v~~-~g~-KMSKS~gn-~i~~~dl 369 (576)
+.++|.||...+... .-+....+.. .| ..+++.++.. +|. |||||.+| .|++.|-
T Consensus 152 ~~~~G~DQ~~~~~l~-rd~a~k~~~~~~~~~p-~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 152 LVPGGIDQRGHIELA-RDLARKFNYKEIFPKP-AGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp EEEEEGGGHHHHHHH-HHHHHHHTHHSTSSS--EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred cccccchHHHHHHHH-HHHHhhhcccccccCc-hheeeccccccCCccccCccCCccEEEEecc
Confidence 788999996432211 1122333433 44 4555556665 888 99999999 8877664
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A .... |
| >PRK14714 DNA polymerase II large subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.2 Score=58.25 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=51.6
Q ss_pred CCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEec
Q psy2393 129 AKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKL 207 (576)
Q Consensus 129 ~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l 207 (576)
.+-...-+.....||+|++..+. ..||.||....---.|..||..+...+-..-.|..||.++...... -+++
T Consensus 657 ~~G~ieVEV~~rkCPkCG~~t~~----~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~--~i~~ 729 (1337)
T PRK14714 657 EGGVIEVEVGRRRCPSCGTETYE----NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRR--TINV 729 (1337)
T ss_pred cCCeEEEEEEEEECCCCCCcccc----ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceE--EecH
Confidence 44445666778899999997654 3999999876444479999997665433355899999877644332 3455
|
|
| >PLN02886 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=90.18 E-value=1.6 Score=45.42 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=49.7
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
.++.. --|+|.+||||..+.+ .-+.++++ | +++.+. =.|.|-.- ...++.++ +++...+.
T Consensus 48 ~v~sG--iqPSG~lHLGnylGai--~~~v~lQ~--~-----~~~~~~-IADlHAlt-------~~~~~~~l-r~~~~~~~ 107 (389)
T PLN02886 48 RVVSG--VQPTGSIHLGNYLGAI--KNWVALQE--T-----YDTFFC-VVDLHAIT-------LPHDPREL-GKATRSTA 107 (389)
T ss_pred eEEEE--ECCCCccHHHHHHHHH--HHHHHHhc--c-----CCEEEE-EecHHHhh-------CCCCHHHH-HHHHHHHH
Confidence 44444 3566999999987765 23333333 7 776433 24555442 12356544 44455678
Q ss_pred HHHhhcCcccc---ccccCCChhhHHH
Q psy2393 94 KYLDGFYIKFD---NWYSTDSIENIDL 117 (576)
Q Consensus 94 ~~l~~lgi~~d---~~~~t~~~~~~~~ 117 (576)
.++..+|++++ .|.++..+++.+.
T Consensus 108 a~~lA~GlDP~ks~if~QS~v~e~~eL 134 (389)
T PLN02886 108 AIYLACGIDPSKASVFVQSHVPAHAEL 134 (389)
T ss_pred HHHHHcCcCccceEEEEeCCCchhHHH
Confidence 88899999987 3555555555433
|
|
| >COG1656 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.44 Score=42.73 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=42.5
Q ss_pred HHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCC---CH-HHHHHHHHHHHHHHHhhcCccccccccCCChhhHH
Q psy2393 41 WVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGM---TP-KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENID 116 (576)
Q Consensus 41 l~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~---~~-~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~ 116 (576)
++|++|+.| |++.+.. +..+..|+..+.+.|. |. .++ ++.. ++|+.- .++... ....
T Consensus 18 LARwLRllG-----ydt~~~~--~~~d~~i~~i~~~e~rIllTRDr~L-------~~r~--k~g~~~-i~i~~~--s~~~ 78 (165)
T COG1656 18 LARWLRLLG-----YDTVYSS--NESDDEIILIAKKEGRILLTRDREL-------YKRA--KLGIKA-ILIRSD--SIEE 78 (165)
T ss_pred HHHHHHHcC-----Cceeeec--cCCcHHHHHHHhcCCeEEEeccHHH-------HHHh--hccCce-EEEeCC--CHHH
Confidence 799999999 9999997 3445566666776553 21 111 2221 455531 233333 4567
Q ss_pred HHHHHHHHHHhcCC
Q psy2393 117 LVQKIYDTLYNKAK 130 (576)
Q Consensus 117 ~v~~~~~~L~~~~g 130 (576)
++.+++.++- .++
T Consensus 79 Ql~e~~~~~~-l~~ 91 (165)
T COG1656 79 QLAEFLARLG-LKP 91 (165)
T ss_pred HHHHHHHHhc-cch
Confidence 7777777777 555
|
|
| >COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.17 E-value=5.1 Score=44.52 Aligned_cols=111 Identities=14% Similarity=0.218 Sum_probs=77.2
Q ss_pred CCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcC---CCCCCcc---cCChHHHHHH
Q psy2393 373 GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK---GYLNMKW---VKDNDTFLSK 446 (576)
Q Consensus 373 g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~---~~~~~~~---~~d~~~l~~~ 446 (576)
||..|.++--+... +....++..+.+.+....+..-...+...++|+..++.+... +.+...+ +.| ..|...
T Consensus 541 g~~~dii~AVL~~~-~~~l~~i~~r~~al~~f~~~~~~~~l~~a~kRv~nIl~k~~~~~~~~v~~~Lf~~~~E-~~L~~a 618 (691)
T COG0751 541 GYRKDIIDAVLALN-PTDLLDIIARAEALQEFLDLPEAKALAAANKRVSNILAKAEKKLSGTVDPSLFEEDAE-KALFEA 618 (691)
T ss_pred CCCHHHHHHHHcCC-CCCHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhcccccCCccChHHhcCHHH-HHHHHH
Confidence 68888888766654 222233333444444433333345666888999999887542 2232222 124 889999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 447 LRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 447 l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
+..+...+..++..-++..++..|..+..-...|++...
T Consensus 619 ~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd~Vm 657 (691)
T COG0751 619 LQALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNVM 657 (691)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHhcCce
Confidence 999999999999999999999999999988999998865
|
|
| >PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=86.38 E-value=1.8 Score=32.52 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=22.8
Q ss_pred HHHHH-HhhhHHHHHHHHHHHHHHHHH
Q psy2393 454 IQKYY-ENRNFNKVLYIVIEQTNFINI 479 (576)
Q Consensus 454 v~~a~-~~~~~~~~~~~l~~~~~~~n~ 479 (576)
+.++| ++++++.|+..|+++++..|+
T Consensus 2 F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 2 FIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 56788 699999999999999999999
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A. |
| >smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases | Back alignment and domain information |
|---|
Probab=85.71 E-value=1.7 Score=31.54 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=25.5
Q ss_pred HHHHH-HhhhHHHHHHHHHHHHHHHHHhhh
Q psy2393 454 IQKYY-ENRNFNKVLYIVIEQTNFINIFFD 482 (576)
Q Consensus 454 v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~ 482 (576)
+.+++ ++++++.|+..++++++..|.+++
T Consensus 2 f~~al~DD~NT~~Al~~l~~l~~~~N~~l~ 31 (56)
T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRLLL 31 (56)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHHHHHhh
Confidence 45677 699999999999999999999874
|
|
| >PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=85.59 E-value=5.8 Score=44.69 Aligned_cols=112 Identities=12% Similarity=0.185 Sum_probs=73.6
Q ss_pred cCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcC---CCCCCcc---cCChHHHHH
Q psy2393 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK---GYLNMKW---VKDNDTFLS 445 (576)
Q Consensus 372 ~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~---~~~~~~~---~~d~~~l~~ 445 (576)
.||..|.++--+... +....++.-..+.+.+.....-...+..++.|+..++.+... +.+...+ +.| +.|..
T Consensus 531 ~g~~~dvi~AVl~~~-~~~~~~~~~r~~aL~~~~~~~~~~~l~~~~kRv~NIl~k~~~~~~~~v~~~l~~~~~E-~~L~~ 608 (682)
T PRK01233 531 EGIRYDVIDAVLALR-PDDLADLDARVEALSAFRKLPEFKALAAANKRVSNILKKAEGKVSGEVDPALFEEPAE-KALYA 608 (682)
T ss_pred cCCCHHHHHHHHccC-CCCHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhccccccCCccChhHcCCHHH-HHHHH
Confidence 478888888766432 111111111122223333233456777888999999877532 1222221 225 88888
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 446 KLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 446 ~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
.+..+...+..++..-++..++..+..+....+.|++...
T Consensus 609 ~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FFD~Vm 648 (682)
T PRK01233 609 ALEELKPKVEPALAAGDYQAALEALAALRPPVDAFFDNVM 648 (682)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHHHHhCCCe
Confidence 8888888888888888999999999999999999999865
|
|
| >TIGR00234 tyrS tyrosyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=84.99 E-value=0.8 Score=47.93 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=25.3
Q ss_pred EEEEcCCCCCCC-cccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecC
Q psy2393 14 IFVTTALPYANG-ELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (576)
Q Consensus 14 ~~v~~~~P~~nG-~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g 62 (576)
+.++. .--||| .+||||+.+ .-.+.++++ .| ++|.++.|
T Consensus 31 ~~vy~-G~dPTg~~lHlGh~v~---l~~l~~lq~-~G-----~~~~ilig 70 (377)
T TIGR00234 31 IKLYV-GFDPTAPSLHLGHLVP---LLKLRDFQQ-AG-----HEVIVLLG 70 (377)
T ss_pred CEEEE-eeCCCCCCccHHHHHH---HHHHHHHHH-CC-----CcEEEEEe
Confidence 34444 347889 899999764 233445544 78 88877654
|
This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples. |
| >PRK04023 DNA polymerase II large subunit; Validated | Back alignment and domain information |
|---|
Probab=84.80 E-value=1.9 Score=49.34 Aligned_cols=77 Identities=16% Similarity=0.137 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEE
Q psy2393 118 VQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPII 197 (576)
Q Consensus 118 v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~ 197 (576)
.+.+.+... .+|.+ .-+....+|++|++.. +.-.||.||....---.|..||....+ ..|.+||..+..
T Consensus 607 ~R~i~~A~~-~~g~~-eVEVg~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~CG~~~~~-----y~CPKCG~El~~ 675 (1121)
T PRK04023 607 TRDINKAAK-YKGTI-EVEIGRRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRCGIEVEE-----DECEKCGREPTP 675 (1121)
T ss_pred cccHHHHHh-cCCce-eecccCccCCCCCCcC----CcccCCCCCCCCCcceeCccccCcCCC-----CcCCCCCCCCCc
Confidence 333444433 35555 4555678999999875 456899999875555689999886432 459999986653
Q ss_pred eeecceeEec
Q psy2393 198 KSSKHFFFKL 207 (576)
Q Consensus 198 ~~~~~~f~~l 207 (576)
. ...-+++
T Consensus 676 ~--s~~~i~l 683 (1121)
T PRK04023 676 Y--SKRKIDL 683 (1121)
T ss_pred c--ceEEecH
Confidence 3 3333555
|
|
| >TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit | Back alignment and domain information |
|---|
Probab=83.65 E-value=7.7 Score=43.79 Aligned_cols=112 Identities=13% Similarity=0.205 Sum_probs=73.8
Q ss_pred cCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCC---CCCCcc---cCChHHHHH
Q psy2393 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKG---YLNMKW---VKDNDTFLS 445 (576)
Q Consensus 372 ~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~---~~~~~~---~~d~~~l~~ 445 (576)
+|+..|.++--+... +....++.-..+.+.+.....-...+..++.|+..++.+.... .+...+ +.| +.|..
T Consensus 541 ~g~~~dvi~AVl~~~-~~~~~~~~~r~~aL~~~~~~~~~~~l~~a~kRv~NIl~k~~~~~~~~v~~~l~~~~~E-~~L~~ 618 (691)
T TIGR00211 541 EGIDVDVIQAVLARR-ETDPADFDARAQALSHFRDLPKAEALAAANKRVANILKKGNPVLSSEIQANLFKEPKE-KALFE 618 (691)
T ss_pred CCCCHHHHHHHHccC-CCCHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhcccccccCccChhHcCCHHH-HHHHH
Confidence 478888888776432 2111111112232333333334567778899999998875321 122221 224 78888
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 446 KLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 446 ~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
.+..+...+...+..-++..++..+..+....+.|++...
T Consensus 619 ~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FFD~Vm 658 (691)
T TIGR00211 619 AVLAIKMNAQESFESGDYETALEALAELRAPVDEFFDSVM 658 (691)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHHHhCCCE
Confidence 8888877778878777999999999999999999999866
|
The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model. |
| >cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=83.57 E-value=1.5 Score=43.72 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=44.5
Q ss_pred CCCCC-cccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcc---cHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2393 21 PYANG-ELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH---GAAIMIAAEKAGMTPKEFINNISSNRKKYL 96 (576)
Q Consensus 21 P~~nG-~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~---G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 96 (576)
--|+| .+||||..+. -.+.++++. | ++|.+..| |.| |.|--...++.+.+++++ ++....+..++
T Consensus 7 ~~PTg~~lHLG~~~~~---~~~~~lq~~-g-----~~~~ilI~-D~~a~~~~~~~~~~~r~~~~~~~i-~~~~~~~~~~~ 75 (269)
T cd00805 7 FDPTAPSLHLGHLVPL---MKLRDFQQA-G-----HEVIVLIG-DATAMIGDPSGKSEERKLLDLELI-RENAKYYKKQL 75 (269)
T ss_pred eCCCCCcccHHHHHHH---HHHHHHHHC-C-----CeEEEEEC-CCeeecCCCCCccccccCCCHHHH-HHHHHHHHHHH
Confidence 46779 8999997753 356666664 8 88776654 222 333222233344566544 55566788888
Q ss_pred hhcCcc
Q psy2393 97 DGFYIK 102 (576)
Q Consensus 97 ~~lgi~ 102 (576)
..+|.+
T Consensus 76 ~a~g~~ 81 (269)
T cd00805 76 KAILDF 81 (269)
T ss_pred HHHHcc
Confidence 888875
|
Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=83.33 E-value=2.4 Score=42.71 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=25.2
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecC
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICA 62 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g 62 (576)
+++.|++| --|+|.+||||+.... .+.++++ .| ++|.++.|
T Consensus 4 ~~~~~y~G-~~PTg~lHlG~l~~~~---~~~~lq~-~g-----~~~~i~ia 44 (292)
T PF00579_consen 4 KPFRVYTG-IDPTGDLHLGHLVPIM---KLIWLQK-AG-----FKVIILIA 44 (292)
T ss_dssp SSEEEEEE-EESSSS-BHHHHHHHH---HHHHHHH-TT-----SEEEEEEE
T ss_pred CCcEEEEe-ECCCCcccchHHHHHH---HHHHHHh-cC-----CccceEec
Confidence 34444443 3677999999887753 2333333 88 88887764
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A .... |
| >PRK12283 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=82.98 E-value=4.2 Score=42.47 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=45.8
Q ss_pred CCCCCcccchHhhhHHHHHHHHHHHh-hcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q psy2393 21 PYANGELHIGHIMEYIQADIWVRFQC-MQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGF 99 (576)
Q Consensus 21 P~~nG~lHiGH~~~~i~~Dvl~R~~~-~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 99 (576)
--|+|.+||||..+.+. .+.. ..| +++.+. =.|.|=.-. ...++.+ .+.....+..++...
T Consensus 9 iqPSG~~HLGnylG~ik-----~wv~lq~~-----~~~~~~-IADlHAlt~------~~~d~~~-ir~~~~~~~a~~lA~ 70 (398)
T PRK12283 9 MRPTGRLHLGHYHGVLK-----NWVKLQHE-----YECFFF-VADWHALTT------HYETPEV-IEKNVWDMVIDWLAA 70 (398)
T ss_pred eCCCCcchHHHHHHHHH-----HHHHHhcC-----CcEEEE-eecHHHHhC------CCCCHHH-HHHHHHHHHHHHHHc
Confidence 36679999999888542 3333 246 665433 244443321 0124544 345556688899999
Q ss_pred Ccccc---ccccCCChhhH
Q psy2393 100 YIKFD---NWYSTDSIENI 115 (576)
Q Consensus 100 gi~~d---~~~~t~~~~~~ 115 (576)
|++++ .|.++..++|.
T Consensus 71 GlDP~k~~if~QS~v~eh~ 89 (398)
T PRK12283 71 GVDPAQATLFIQSKVPEHA 89 (398)
T ss_pred CCCccceEEEECCCchHHH
Confidence 99986 45555555553
|
|
| >PRK12282 tryptophanyl-tRNA synthetase II; Reviewed | Back alignment and domain information |
|---|
Probab=82.21 E-value=0.75 Score=47.23 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=41.8
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
.+++.- -|+|.+||||..+.+.. .+++...| . +. ++=.|.|..-. ...++.++ +++..+..
T Consensus 4 ~v~sG~--~PTG~~HLGn~l~~~~~---~~~lQ~~~-----~-~~-i~IaD~ha~~~------~~~~~~~i-~~~~~~~~ 64 (333)
T PRK12282 4 IILTGD--RPTGKLHLGHYVGSLKN---RVALQNEH-----E-QF-VLIADQQALTD------NAKNPEKI-RRNILEVA 64 (333)
T ss_pred EEEEee--CCCCcchHHHHHHHHHH---HHHHHhCC-----C-EE-EEEccchhHhC------CCCCHHHH-HHHHHHHH
Confidence 344443 45699999998775432 22344456 5 43 33356663221 12355544 45556677
Q ss_pred HHHhhcCcccc
Q psy2393 94 KYLDGFYIKFD 104 (576)
Q Consensus 94 ~~l~~lgi~~d 104 (576)
.++..+|++++
T Consensus 65 ~~~lA~G~dp~ 75 (333)
T PRK12282 65 LDYLAVGIDPA 75 (333)
T ss_pred HHHHHhCcChh
Confidence 78888999886
|
|
| >PRK14908 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=81.13 E-value=11 Score=44.18 Aligned_cols=110 Identities=9% Similarity=0.153 Sum_probs=69.6
Q ss_pred cCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc---cCChHHHHHHHH
Q psy2393 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKW---VKDNDTFLSKLR 448 (576)
Q Consensus 372 ~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~---~~d~~~l~~~l~ 448 (576)
+|+..|.++--+... +....++.-..+.+.+.....-...+..++.|+..++.+.....+...+ +.| +.|.+.+.
T Consensus 856 ~G~~~dvI~AVl~~~-~~~~~~~~~r~~aL~~f~~~~~~~~l~~a~kRv~NIl~k~~~~~vd~~Lf~~~~E-~~L~~a~~ 933 (1000)
T PRK14908 856 LGFDKDEIAAVLPDA-CKNPAEADKTAQALQELKSTEIFAEIAAALNRLKRILASLSFSVTDASLLLEPAE-LNLKQALD 933 (1000)
T ss_pred cCCCHHHHHHHHccC-CCCHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhhcCCCccChhhcCCHHH-HHHHHHHH
Confidence 479999999776532 1111122222222333333344667788899999998875322222222 124 67777777
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 449 VVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 449 ~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
.+...+... .-++..++..+..+....+.|++...
T Consensus 934 ~~~~~~~~~--~~dy~~al~~La~L~~~Id~FFD~Vm 968 (1000)
T PRK14908 934 AFREELTEL--PIDLKDYVAAAAELPQAVNTFFDEVL 968 (1000)
T ss_pred HHHHHHHHh--hhhHHHHHHHHHhhhhHHHHHhCCCE
Confidence 766665555 45889999999999999999999865
|
|
| >PRK12283 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=81.11 E-value=0.67 Score=48.29 Aligned_cols=42 Identities=29% Similarity=0.273 Sum_probs=26.5
Q ss_pred CCCcEEee-eccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 338 KLPNNIFV-HGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 338 ~~p~~~~~-~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+.|..++. +.+|.. +|+|||||.+|.|.+.| +++.++=-+.+
T Consensus 245 ~~P~~~~~~~~~I~gLdg~KMSKS~~n~I~L~D------s~~~I~kKI~~ 288 (398)
T PRK12283 245 PEPQALLTEASKMPGLDGQKMSKSYGNTIGLRE------DPESVTKKIRT 288 (398)
T ss_pred CCCcccccCCCcccCCCCCcCCCCCCCeeeCcC------CHHHHHHHHHh
Confidence 55654332 344544 88999999999887654 34555554444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 576 | ||||
| 1p7p_A | 551 | Methionyl-trna Synthetase From Escherichia Coli Com | 1e-133 | ||
| 1f4l_A | 551 | Crystal Structure Of The E.Coli Methionyl-Trna Synt | 1e-133 | ||
| 3h9c_A | 547 | Structure Of Methionyl-Trna Synthetase: Crystal For | 1e-133 | ||
| 1qqt_A | 551 | Methionyl-Trna Synthetase From Escherichia Coli Len | 1e-132 | ||
| 3h97_A | 560 | Structure Of A Mutant Methionyl-trna Synthetase Wit | 1e-130 | ||
| 1rqg_A | 722 | Methionyl-Trna Synthetase From Pyrococcus Abyssi Le | 8e-63 | ||
| 2csx_A | 497 | Crystal Structure Of Aquifex Aeolicus Methionyl-Trn | 2e-37 | ||
| 4dlp_A | 536 | Crystal Structure Of Methionyl-Trna Synthetase Metr | 5e-32 | ||
| 2x1l_A | 524 | Crystal Structure Of Mycobacterium Smegmatis Methio | 9e-32 | ||
| 1a8h_A | 500 | Methionyl-Trna Synthetase From Thermus Thermophilus | 4e-31 | ||
| 1woy_A | 500 | Crystal Structure Of Methionyl Trna Synthetase Y225 | 9e-31 | ||
| 3tun_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 1e-30 | ||
| 4eg1_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 2e-30 | ||
| 4eg5_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 2e-30 | ||
| 3kfl_A | 564 | Leishmania Major Methionyl-Trna Synthetase In Compl | 2e-30 | ||
| 2d54_A | 502 | Crystal Structure Of Methionyl Trna Synthetase Y225 | 3e-30 | ||
| 1mea_A | 28 | Methionyl-Trna Synthetase Zinc Binding Domain. 3d S | 1e-04 | ||
| 1obh_A | 878 | Leucyl-Trna Synthetase From Thermus Thermophilus Co | 3e-04 | ||
| 2v0c_A | 878 | Leucyl-Trna Synthetase From Thermus Thermophilus Co | 3e-04 | ||
| 1wkb_A | 810 | Crystal Structure Of Leucyl-Trna Synthetase From Th | 4e-04 | ||
| 1wz2_A | 967 | The Crystal Structure Of Leucyl-Trna Synthetase And | 4e-04 |
| >pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed With Methionine Phosphonate Length = 551 | Back alignment and structure |
|
| >pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase Complexed With Methionine Length = 551 | Back alignment and structure |
|
| >pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2 Length = 547 | Back alignment and structure |
|
| >pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Length = 551 | Back alignment and structure |
|
| >pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With Modified Specificity Length = 560 | Back alignment and structure |
|
| >pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 722 | Back alignment and structure |
|
| >pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna Synthetase Complexed With Trna(Met) Length = 497 | Back alignment and structure |
|
| >pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From Brucella Melitensis Bound To Selenomethionine Length = 536 | Back alignment and structure |
|
| >pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524 | Back alignment and structure |
|
| >pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus Length = 500 | Back alignment and structure |
|
| >pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f Mutant From Thermus Thermophilus Length = 500 | Back alignment and structure |
|
| >pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1356 Length = 542 | Back alignment and structure |
|
| >pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Substrate Methionine Length = 542 | Back alignment and structure |
|
| >pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1312 Length = 542 | Back alignment and structure |
|
| >pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With Methionyladenylate And Pyrophosphate Length = 564 | Back alignment and structure |
|
| >pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a Mutant From Thermus Thermophilus Length = 502 | Back alignment and structure |
|
| >pdb|1MEA|A Chain A, Methionyl-Trna Synthetase Zinc Binding Domain. 3d Structure And Homology With Rubredoxin And Gag Retroviral Proteins Length = 28 | Back alignment and structure |
|
| >pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878 | Back alignment and structure |
|
| >pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878 | Back alignment and structure |
|
| >pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810 | Back alignment and structure |
|
| >pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 | Back alignment and structure |
|---|
Score = 668 bits (1726), Expect = 0.0
Identities = 241/572 (42%), Positives = 341/572 (59%), Gaps = 23/572 (4%)
Query: 2 KKHDSEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFIC 61
H S + ++I VT A PYANG +H+GH++E+IQAD+WVR+Q M+ V FIC
Sbjct: 8 HHHGSMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHE-----VNFIC 62
Query: 62 ADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKI 121
ADDAHG IM+ A++ G+TP++ I +S + GF I +DN++ST S EN L + I
Sbjct: 63 ADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELI 122
Query: 122 YDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPT 181
Y L I N+ I+Q +DP K +FLPDR++KG CP C + DQYGD CE C + Y+PT
Sbjct: 123 YSRLKEN-GFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPT 181
Query: 182 KLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKD 241
+LI P S++SG P+++ S+HFFF L + L+ W LQ ++ NK++EW E
Sbjct: 182 ELIEPKSVVSGATPVMRDSEHFFFDLP--SFSEMLQAW-TRSGALQEQVANKMQEWFESG 238
Query: 242 NKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNF 301
+ WDISRDAPYFG +IPN KYFYVWLDAPIG + S KN +K G +F
Sbjct: 239 LQ--QWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSV------SF 290
Query: 302 DEF-ISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSN 360
DE+ E YHFIGKDI YF LFWPA+L+ S + P+N+FVHG++T+NG KMSKS
Sbjct: 291 DEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSR 350
Query: 361 KIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRS 420
I +L + + LRYY +KL+++I+DID N + F+ VN+D++ K +N+ASR+
Sbjct: 351 GTFIKASTWLN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRN 409
Query: 421 SSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIF 480
+ FI K F G L + + + I + +E+R F K + ++ + N +
Sbjct: 410 AGFINKRFDGVLASE--LADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRY 467
Query: 481 FDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWI 540
D+ PW +AK L I S + FR+L YLKP+LP L + E FLN L W
Sbjct: 468 VDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT-ELTWD 526
Query: 541 NIFTPLTQNHKINKYRHLMTRVDKNIVDNLLK 572
I PL HK+N ++ L R+D V+ L++
Sbjct: 527 GIQQPLL-GHKVNPFKALYNRIDMRQVEALVE 557
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 602 bits (1553), Expect = 0.0
Identities = 167/579 (28%), Positives = 272/579 (46%), Gaps = 40/579 (6%)
Query: 12 RRIFVTTALPYANGELHIGHIM-EYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAI 70
R VT+ALPYANG +H GH+ Y+ ADI+VR+ ++ ++ V FIC D HG I
Sbjct: 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGED-----VVFICGTDEHGTPI 56
Query: 71 MIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAK 130
A K G +P+E ++ K I FD + T+ + L Q+ + Y
Sbjct: 57 SFRALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYEN-G 115
Query: 131 LIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSIL 190
++ K Q + +FLPDR++ G CP C A+DQ GD CE C TP LINP +
Sbjct: 116 HLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAI 175
Query: 191 SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250
G + S H++ K+ + L++W I + +P + N + W+ + + I+
Sbjct: 176 CGRPISFRDSAHYYIKMQ--DFAERLKRW-IEKQPWKPNVKNMVLSWI--EEGLEERAIT 230
Query: 251 RDAPYFGIKIPNTLE----KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNEL-RNFDEFI 305
RD + GI +P E K YVW +APIGY++ F++ G ++ + N D
Sbjct: 231 RDLNW-GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNID--- 286
Query: 306 SSPNTEQYHFIGKDIFYFHILFWPAILKFSGR----------KLPNNIFVHGFMTINGKK 355
T HFIGKD FH +FWPA L G+ LP +I + ++T+ GKK
Sbjct: 287 --GQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKK 344
Query: 356 MSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYIN 415
S S I +L + ++LRYY+ + + + D DF+ F +N +L+ N
Sbjct: 345 FSTSRNWAIWVHEFLDV-FPADYLRYYLTTIM-PETRDSDFSFSDFKVRINEELVNNLGN 402
Query: 416 IASRSSSFIEKYFKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQ 473
R+ +F+ +YF G + + + + L ++ + + N F L V+
Sbjct: 403 FVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSL 462
Query: 474 TNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLN 533
+F N +FD +PWK AK + + + L+ + L I L+P LP+ ++ + LN
Sbjct: 463 ASFGNRYFDHKQPWKTAKED--KVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLN 520
Query: 534 ISPLQWINIFTPLTQNHKINKYRHLMTRVDKNIVDNLLK 572
+ ++ F L HK+ K L +V + + +
Sbjct: 521 LDEVKRWE-FRELPAGHKVRKPEILFKKVTDDQIIYFIL 558
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 270 bits (693), Expect = 2e-84
Identities = 131/564 (23%), Positives = 245/564 (43%), Gaps = 84/564 (14%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
++ +VTT + Y N H+GH I AD R+ ++ + V+F+ D HG I
Sbjct: 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYD-----VFFLTGTDEHGLKIQ 59
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
AE+ G++PKE ++ + KK + I++ + T ++ VQK+++ Y +
Sbjct: 60 KKAEELGISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRG-- 117
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYTPTKLI-NPYSI 189
D Y +Y G +C C + +L +
Sbjct: 118 -------------------DIY----------LGEYEGWYCVGCEEFKSEAELAEDHTCP 148
Query: 190 LSGTKPIIKSSKHFFFKLSD--KRCIDFLRKWAIHDKRLQP-----EIVNKIKEWLEKDN 242
+ K +FF+LS + ++ K + + +QP EI++ +K+ L+
Sbjct: 149 IHQKKCEYIKEPSYFFRLSKYQDKLLELYEK---NPEFIQPDYRRNEIISFVKQGLK--- 202
Query: 243 KFNDWDISRDAPYF--GIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRN 300
D ++R GI +P E YVW DA Y+++L++ E P
Sbjct: 203 ---DLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWP--------- 250
Query: 301 FDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSN 360
H +GKDI FH ++WPA L G +LP +F HG+ T+ GKKMSK+
Sbjct: 251 ----------ADLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTVEGKKMSKTL 300
Query: 361 KIGISPLYYLKI-GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASR 419
+ P ++ G++ +RY++ ++ +D DF+ ++ ++ +N +L + N+ SR
Sbjct: 301 GNVVDPYEVVQEYGLDE--VRYFLLREVPFG-QDGDFSKKAILNRINGELANEIGNLYSR 357
Query: 420 SSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINI 479
+ K+ G ++ ++ + + + + Y E NF K + +++ T+++N
Sbjct: 358 VVNMAHKFLGGEVS---GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNK 414
Query: 480 FFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQW 539
+ D+ +PW L K E+L K+ L++ +LT L PI PN K L
Sbjct: 415 YVDEKQPWALNKER-KKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEKE-FL 472
Query: 540 INIFTPLTQNHKINKYRHLMTRVD 563
+ +K+ + + L + +
Sbjct: 473 KELKPYSKNTYKLGERKILFPKRE 496
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 270 bits (693), Expect = 5e-84
Identities = 127/585 (21%), Positives = 228/585 (38%), Gaps = 81/585 (13%)
Query: 1 MKKHDSEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFI 60
M H ++TTA+ Y NG HIGH EYI D RF+ + + V ++
Sbjct: 1 MAHHHHHHGGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYD-----VRYL 55
Query: 61 CADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQK 120
D HG + A K G+ E S ++ + I FD + T ++ + +
Sbjct: 56 TGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKA 115
Query: 121 IYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYT 179
I+ + + D Y D Y G + +T
Sbjct: 116 IWKRMADAG---------------------DIY----------LDAYKGWYSIRDERFFT 144
Query: 180 PTKLI-----NPYSILSGTKPIIKSSKHFFFKLSD--KRCIDFLRKWAIHDKRLQP---- 228
+ + +G + +FF+LS R + + H + + P
Sbjct: 145 ENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEE---HPEFIGPDARR 201
Query: 229 -EIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFE 287
EIV+ + L+ D ISR +G+ +P+ + YVW+DA YL +
Sbjct: 202 NEIVSFVSGGLK------DLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGV----- 250
Query: 288 KGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHG 347
G P + R + P H IGKDI FH ++WPA L +G LP IF HG
Sbjct: 251 -GFPDTESESFRRY-----WPAD--LHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHG 302
Query: 348 FMTINGKKMSKSNKIGISPLYYLKI-GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406
++ G+KMSKS + P+ + G++ +RY++ ++ +D +N + I VN
Sbjct: 303 WLLNRGEKMSKSIGNVVDPVNLVDTFGLDQ--VRYFLLREVPFG-QDGSYNEDAIIGRVN 359
Query: 407 SDLIGKYINIASRSSSFIEKYFKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFN 464
+DL + N+A RS S + K + ++ ++ L+ + ++++++ +
Sbjct: 360 ADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMH 419
Query: 465 KVLYIVIEQTNFINIFFDQNKPWKLAKNNIY--HEKLHKISSRLLEAFRILTIYLKPILP 522
L + N +F +PW L K++ ++ + LE RI ++ L+P++P
Sbjct: 420 LALEAIWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMP 479
Query: 523 NLAKSVETFLNISP--LQWINIFTPLTQNHKINKYRHLMTRVDKN 565
+ L + I + + + R +
Sbjct: 480 ESTAKLLDLLGQPTDERDFSAIANRIKPGTSLPAPSGIFPRYQND 524
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 264 bits (677), Expect = 1e-81
Identities = 129/568 (22%), Positives = 231/568 (40%), Gaps = 82/568 (14%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
++TTA+ Y NG+ HIGH E I D RFQ + + VYF+ D HG ++ +A
Sbjct: 28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMD-----VYFLTGTDEHGIKMLQSA 82
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134
K G+TP++ + +S ++ + D++ T + Q I+ +
Sbjct: 83 RKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANG----- 137
Query: 135 KKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYTPTKLI----NPYSI 189
D Y K Y G + + Y +
Sbjct: 138 ----------------DIY----------KGGYAGWYSVRDEAYYGEEETEVRADGVRYG 171
Query: 190 LSGTKPIIKSSKHFFFKLSD--KRCIDFLRKWAIHDKRLQP-----EIVNKIKEWLEKDN 242
GT + +FF+LS + +D + + P EIV+ +K L+
Sbjct: 172 PQGTPVEWVEEESYFFRLSAYQDKLLDLYEN---NPGFIMPAERRNEIVSFVKSGLK--- 225
Query: 243 KFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFD 302
D ISR +GI +P + YVW+DA Y+ +L + + + Y
Sbjct: 226 ---DLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITAL-GYPDTTDERWAY------- 274
Query: 303 EFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKI 362
P H IGKDI FH ++WPA L + LP +F HGF+ G+KMSKS
Sbjct: 275 ----WPAN--AHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGN 328
Query: 363 GISPLYYLKI-GMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSS 421
I P ++ G++ LRY++ ++ +D ++ ++ ++ N+DL N+A RS
Sbjct: 329 VIDPFELVERYGLDQ--LRYFLMREVPFG-QDGSYSHEAIVNRTNADLANDLGNLAQRSL 385
Query: 422 SFIEKYFKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINI 479
S I K +G + + + + L + + +K +++ + L + N
Sbjct: 386 SMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANR 445
Query: 480 FFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP--L 537
+F +PW L K + ++ + E R + I ++P +P A+ + L +
Sbjct: 446 YFAGQEPWALRKTD--PARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADKR 503
Query: 538 QWINI-FTPLTQNHKINKYRHLMTRVDK 564
Q+ ++ +PL + + + R +
Sbjct: 504 QFADVLASPLAGGTDLPAPQPVFPRYVE 531
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 261 bits (670), Expect = 5e-81
Identities = 118/534 (22%), Positives = 221/534 (41%), Gaps = 80/534 (14%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+VTT + Y N E H+GH + AD R+ + +F+ D HG + AA
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYR-----TFFLTGTDEHGETVYRAA 60
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134
+ AG PK F++ +S K+ D I +D++ T + +VQ + +Y
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAG----- 115
Query: 135 KKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYTPTKLINPYSILSGT 193
D Y +Y G +C C YT +L+ + G
Sbjct: 116 ----------------DIY----------YGEYEGLYCVSCERFYTEKELVEGLCPIHGR 149
Query: 194 KPIIKSSKHFFFKLSD--KRCIDFLRKWAIHDKRLQP-----EIVNKIKEWLEKDNKFND 246
+ ++FF++ +++++ + ++P E++ + E + D
Sbjct: 150 PVERRKEGNYFFRMEKYRPWLQEYIQE---NPDLIRPEGYRNEVLAMLAEPIG------D 200
Query: 247 WDISRDAPYF--GIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEF 304
ISR GI +P +VW DA + Y+++L Y E + F
Sbjct: 201 LSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALD-----------YPEGEAYRTF 249
Query: 305 ISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMT-INGKKMSKSNKIG 363
P+ +H IGKDI H +FWP +LK +G + ++ V GF+ +G+KMSK+
Sbjct: 250 W--PHA--WHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNV 305
Query: 364 ISPLYYL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSS 422
+ P L K G + LRYY+ ++ +D + ++ + +DL N+ R+ +
Sbjct: 306 VDPFALLEKYGRDA--LRYYLLREIPYG-QDTPVSEEALRTRYEADLADDLGNLVQRTRA 362
Query: 423 FIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFD 482
+ ++ +G + L++ ++ ++ F+ L + +N + +
Sbjct: 363 MLFRFAEGRIP---EPVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYIN 419
Query: 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP 536
+ KPW+L K E+ + R++E RI +I L P +P+ + L +
Sbjct: 420 EKKPWELFKKE--PEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE 471
|
| >3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 | Back alignment and structure |
|---|
Score = 253 bits (647), Expect = 3e-77
Identities = 117/531 (22%), Positives = 222/531 (41%), Gaps = 50/531 (9%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
FVT+ + Y N HIGH+ + D+ R+ ++ + V+ + D HG + AA
Sbjct: 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGER-----VFALTGTDEHGQKVAEAA 66
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134
++ ++P +F ++ KK + D + T + ++ +V++++ L K + +
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 135 KKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTK 194
+ + ++ P G N S+ SG
Sbjct: 127 RYEGWYSISDESFLTPQNITDGVDKDGNPC---------------------KVSLESGHV 165
Query: 195 PIIKSSKHFFFKLSD--KRCIDFLRKWAIHDKRLQPEI-VNKIKEWLEKDNKFNDWDISR 251
S +++ F+LS +R +++ + + PE ++ +EK D +SR
Sbjct: 166 VTWVSEENYMFRLSAFRERLLEWYHA---NPGCIVPEFRRREVIRAVEKG--LPDLSVSR 220
Query: 252 DAPY---FGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSP 308
+ I +P + YVWLDA YL + ++ G + + N E +
Sbjct: 221 ARATLHNWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPA- 279
Query: 309 NTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLY 368
H IGKDI FH ++WPA L +G LP I HG+ T + KK+SKS P+
Sbjct: 280 ---DVHVIGKDILKFHAIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFDPVE 336
Query: 369 YL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKY 427
+ G + L+Y++ + +D D++ ++ I+ +N +L N+ R +S
Sbjct: 337 KAEEFGYDA--LKYFLLRESGFS-DDGDYSDKNMIARLNGELADTLGNLVMRCTSAK-IN 392
Query: 428 FKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485
G + +++++ + ++ + + YY + K + V + IN +
Sbjct: 393 VNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDMA 452
Query: 486 PWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP 536
PWKL K + E+L + LE R+ T+ L PILP + + L +
Sbjct: 453 PWKLVKTD--PERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPE 501
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 8e-76
Identities = 119/545 (21%), Positives = 216/545 (39%), Gaps = 79/545 (14%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
F TT + Y N HIGH+ + D+ R+ ++ + V+ + D HG + AA
Sbjct: 29 FATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEE-----VFVMTGTDEHGQKVAEAA 83
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134
K G++P +F ++SS K+ + + T + + LVQ I+ L K
Sbjct: 84 AKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKG----- 138
Query: 135 KKINQFFDPIKNIFLPDRYIKGECPICNAKDQY-GDFCECCSSIYTPTKLINPYSILSGT 193
D Y +Y G + S T + +
Sbjct: 139 ----------------DIY----------LGKYEGWYSVSDESFLTAQNVADGVDRDGKP 172
Query: 194 KPIIKSSKH---------FFFKLSD--KRCIDFLRKWAIHDKRLQP-----EIVNKIKEW 237
+ S H + F+LS +R + + H + P E++ +++
Sbjct: 173 CKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHD---HPNCIVPEFRRREVIKTVEKG 229
Query: 238 LEKDNKFNDWDISRDAPYF---GIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKK 294
L D ISR I +P YVWLDA Y +
Sbjct: 230 LF------DLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGA-LTRVATDGTET 282
Query: 295 YNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGK 354
+E + P H +GKDI FH ++WPA L + LP + HG+ T + K
Sbjct: 283 LDEDHHALNRW--PAD--VHVVGKDILKFHAIYWPAFLMSAELPLPERLVSHGWWTKDHK 338
Query: 355 KMSKSNKIGISPLYYL-KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKY 413
K+SKS P+ + G++ L+Y++ + N + +D D++ ++ ++ +N +L
Sbjct: 339 KISKSLGNAFDPVEKAKEFGIDA--LKYFLMRESNFQ-DDGDYSDKNMVARLNGELADTL 395
Query: 414 INIASRSSSFIEKYFKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVI 471
N+ SR + G ++ + + T ++ L ++ ++ YY + L +
Sbjct: 396 GNLVSRCVAPK-INVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIF 454
Query: 472 EQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETF 531
+ +N + +N PWKL K + +L + +E RI T++L+P++P AK +
Sbjct: 455 DVLRSLNAYVTENAPWKLVKMD--TARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDA 512
Query: 532 LNISP 536
L +
Sbjct: 513 LGVPE 517
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
++T A PY +G LH+GH Y D+ RF+ MQ G V F A G+ I+ A
Sbjct: 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQ---GY--NVLFPMAWHITGSPIVGIA 91
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTD 110
E+ + I K + + D
Sbjct: 92 ERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVK 127
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 58/374 (15%), Positives = 118/374 (31%), Gaps = 62/374 (16%)
Query: 191 SGTKPIIK-SSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDI 249
G + +IK +F + + RK K L + + ++ +
Sbjct: 452 FGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDW---LDKKAC 508
Query: 250 SRDAPYFGIKIPNTLEKY--------FYVWLDAPIGYLASL------------KNFFEKG 289
+R G +P E Y+ ++ L FF+
Sbjct: 509 AR-KIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYI 567
Query: 290 GPKKKYNELRNFDEFISSPNTEQYHFI---------------GKDIFYFHILFW--PAIL 332
++ + E + E H + GKD+ H+ F+ +
Sbjct: 568 FLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVA 627
Query: 333 KFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIE 392
F P I V+GF T+ G+KMSKS ++ + ++ + +R YI S L
Sbjct: 628 IFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIE-ENGADVVRLYIMS-LAEHDS 685
Query: 393 DIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSS 452
D D+ + I ++ + S+ F E KG + +K + + L +L
Sbjct: 686 DFDWRRKEVGKLRKQ--IERFYELISQ---FAEYEVKGNVELKDI--DRWMLHRLNKAIK 738
Query: 453 SIQKYYENRNFNKVL-YIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFR 511
E + + N + + + + +++ + L
Sbjct: 739 ETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG----RDDEAKRYV------LRTLAD 788
Query: 512 ILTIYLKPILPNLA 525
+ + P P++
Sbjct: 789 VWVRLMAPFTPHIC 802
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 5e-10
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
++T A PY +G LH+GH Y D+ RF+ MQ G V F A G+ I+ A
Sbjct: 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQ---GY--NVLFPMAWHITGSPIVGIA 91
Query: 75 EKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTD 110
E+ + I K + + D
Sbjct: 92 ERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVK 127
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 2e-09
Identities = 75/502 (14%), Positives = 148/502 (29%), Gaps = 67/502 (13%)
Query: 65 AHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDT 124
AH +A E E + + + + YI ++ V K+
Sbjct: 327 AHAPFDHVALEDLKRET-EILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIK 385
Query: 125 LYN-KAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKL 183
K KL K + K IF Y +G+ P+ K+ +
Sbjct: 386 SQKDKEKLEQATKTIYKAEYHKGIFKVPPY-EGK-PVQEVKEAIAKEMLEKGIAEIMYEF 443
Query: 184 INPYSIL-SGTKPIIKSSKH-FFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKD 241
I G + +IK +F + + RK K L + + ++
Sbjct: 444 AEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWL 503
Query: 242 NKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLAS-------------------- 281
+ +R G +P E D+ I
Sbjct: 504 D---KKACAR-KIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKL 559
Query: 282 LKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYF-----------HILFWPA 330
FF+ ++ + E + E H + ++ Y+ I
Sbjct: 560 TPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLT 619
Query: 331 ILKFSGRKL------PNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIA 384
F+ + P I V+GF T+ G+KMSKS ++ + ++ + +R YI
Sbjct: 620 FFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE-NGADVVRLYIM 678
Query: 385 SKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFL 444
S D D+ + I ++ + S+ F E KG + +K + + L
Sbjct: 679 SL-AEHDSDFDWRRKEVGKLRKQ--IERFYELISQ---FAEYEVKGNVELKDI--DRWML 730
Query: 445 SKLRVVSSSIQKYYENRNFNKVL-YIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKIS 503
+L E + + N + + + + +++ +
Sbjct: 731 HRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG----RDDEAKRYV---- 782
Query: 504 SRLLEAFRILTIYLKPILPNLA 525
L + + P P++
Sbjct: 783 --LRTLADVWVRLMAPFTPHIC 802
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 4e-07
Identities = 86/599 (14%), Positives = 156/599 (26%), Gaps = 199/599 (33%)
Query: 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYN------KAKLII-------NKKINQFF 141
+ D F FD D ++I L ++ D + + + + +F
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 142 DPIKNI---FLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIK 198
+ + I FL IK E + E +Y ++ Y++ S +P +K
Sbjct: 84 EEVLRINYKFLMSP-IKTEQR--QPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLK 139
Query: 199 SSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKI---------KEWLEKDNKFNDWDI 249
LR+ L+P + K W+ D + +
Sbjct: 140 -----------------LRQAL---LELRPA--KNVLIDGVLGSGKTWVALD-VCLSYKV 176
Query: 250 SRDAPYFGIKIPNTLEKYFYVWL-----DAPIGYLASLKNFFEKGGPKKKYNELRNFDEF 304
F I F WL ++P L L+ + P + +
Sbjct: 177 QCKMD-FKI---------F--WLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSN 222
Query: 305 ISSPNTEQYHFIGKDIF----YFHILF-----W-PAILK-FSGR--------------KL 339
I + + + Y + L F+ L
Sbjct: 223 IKLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 340 PNNIFVHGFMTINGKKMSKSNKIG-------------------ISPLYYLKIG-----MN 375
H + + ++ +P I
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 376 PEW--LRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKY----------INIAS----- 418
W ++ KL IE S ++ + K +I +
Sbjct: 342 ATWDNWKHVNCDKLTTIIE-------SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 419 -----------------RSSSFIEKYFKG--------YLNMKWVKDNDTFLSKLRVVSSS 453
S +EK K YL +K +N+ L + V +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 454 IQKYYENRNFNKVL-------YIV-----IEQTN----FINIFFDQNKPWKLAKNNIYHE 497
I K +++ + +I IE F +F D + K I H+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR--FLEQK--IRHD 510
Query: 498 KL-HKISSRLLEAFRILTIYLKPILPN------LAKSVETFL-NISPLQWINIFTPLTQ 548
S +L + L Y I N L ++ FL I + +T L +
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 4e-06
Identities = 83/534 (15%), Positives = 147/534 (27%), Gaps = 194/534 (36%)
Query: 66 HGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTL 125
G ++ + K + + + K F++ N S +++ ++++QK+
Sbjct: 156 DG---VLGSGKTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETV--LEMLQKLL--- 206
Query: 126 YNKAKLIINKKINQFFDPIKNIFLPDRYIKGE------------C-----PICNAKD-QY 167
I+ D NI L I+ E C + NAK
Sbjct: 207 -----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 168 GDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWA-IHDKRL 226
+ C + T T+ LS S H L+ L K+ + L
Sbjct: 262 FNLS--CKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 227 QPE-----------IVNKIKEWLEKDNKFNDW------------DISRDA-------PYF 256
E I I++ L +++W + S + F
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGL---ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 257 --------GIKIP-NTLEKYFYVWLDAPIGYLASLKNFFEK-----GGPKK--------- 293
IP L W D + + N K PK+
Sbjct: 376 DRLSVFPPSAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 294 -------------------KYNELRNFD-EFISSPNTEQYHFIGKDIFYFHILFWPAILK 333
YN + FD + + P +QY FY HI
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-------FYSHI-------- 477
Query: 334 FSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIED 393
G L K + ++ + + +L + +L KI
Sbjct: 478 --GHHL--------------KNIEHPERMTLFRMVFL----DFRFLE--------QKIRH 509
Query: 394 IDFNSQSFISCVN--SDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVS 451
+ S +N L K++K Y + DND +L
Sbjct: 510 DSTAWNASGSILNTLQQL----------------KFYKPY-----ICDNDPKYERL---V 545
Query: 452 SSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSR 505
++I + N + + T+ + I +A++ E+ HK R
Sbjct: 546 NAILDFLPKIEENLICS---KYTDLLRIAL-------MAEDEAIFEEAHKQVQR 589
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAG-- 78
PYANG LH+GH + I D VR++ MQ G ++ D HG I A K G
Sbjct: 57 PYANGNLHMGHALNKILKDFIVRYKTMQ---GF--YAPYVPGWDTHGLPIEQALTKKGVD 111
Query: 79 ---MTPKEF 84
M+ EF
Sbjct: 112 RKKMSTAEF 120
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 7e-05
Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 24/127 (18%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-GM 79
P ANG H+GH D++ R++ M+ G D HG + + EK G+
Sbjct: 47 PTANGLPHVGHAQARSYKDLFPRYKTMR---GY--YAPRRAGWDTHGLPVELEVEKKLGL 101
Query: 80 TPKEFINNISS---NRK------KYLD---------GFYIKFDNWYSTDSIENIDLVQKI 121
K I N+ Y +++ ++ Y+T I+ +
Sbjct: 102 KSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWS 161
Query: 122 YDTLYNK 128
L+++
Sbjct: 162 LKNLFDR 168
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 342 NIFVH-GFMTINGKKMSKS--NKIGISPLYYLKIGMNPEWLRYYIAS 385
+VH G + +G KMSKS N + +S L G++P +R + S
Sbjct: 277 RHYVHTGMIGWDGHKMSKSRGNLVLVSQL--RAQGVDPSAIRLGLFS 321
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 576 | |||
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerizati | 100.0 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacy | 100.0 | |
| 3u1f_A | 542 | Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta | 100.0 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRN | 100.0 | |
| 4dlp_A | 536 | Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA | 100.0 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, pro | 100.0 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structura | 100.0 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A | 100.0 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, | 100.0 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 100.0 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s | 100.0 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 100.0 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 100.0 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 100.0 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 100.0 | |
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys | 100.0 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossma | 100.0 | |
| 3sp1_A | 501 | Cysteinyl-tRNA synthetase; structural genomics, se | 100.0 | |
| 3tqo_A | 462 | Cysteinyl-tRNA synthetase; protein synthesis, liga | 100.0 | |
| 2zue_A | 629 | Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase | 100.0 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics | 100.0 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX | 100.0 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, amin | 100.0 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin | 99.97 | |
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 99.78 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 99.7 | |
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 99.69 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 99.69 | |
| 3al0_C | 592 | Glutamyl-tRNA(Gln) amidotransferase subunit C, GL | 99.66 | |
| 3afh_A | 488 | Glutamyl-tRNA synthetase 2; protein-substrate comp | 99.66 | |
| 4g6z_A | 490 | Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, | 99.63 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 99.63 | |
| 1j09_A | 468 | Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r | 99.63 | |
| 2ja2_A | 498 | Glutamyl-tRNA synthetase; non-discriminating gluta | 99.6 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 99.52 | |
| 4gri_A | 512 | Glutamate--tRNA ligase; structural genomics, seatt | 99.45 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 98.3 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 97.99 | |
| 1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. | 97.96 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 97.92 | |
| 2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas | 97.87 | |
| 2g36_A | 340 | Tryptophanyl-tRNA synthetase; TM0492, structural g | 97.85 | |
| 3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str | 97.76 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 97.66 | |
| 3tze_A | 406 | Tryptophanyl-tRNA synthetase; structural genomics, | 97.61 | |
| 2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth | 97.6 | |
| 2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, struc | 97.5 | |
| 3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin | 97.48 | |
| 1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 97.45 | |
| 1i6k_A | 328 | TRPRS, tryptophanyl-tRNA synthetase; class I tRNA | 97.45 | |
| 1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 97.36 | |
| 2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st | 97.34 | |
| 3i05_A | 395 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP | 97.34 | |
| 2yy5_A | 348 | Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt | 97.24 | |
| 3vgj_A | 373 | Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; | 97.06 | |
| 2yxn_A | 322 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 95.37 | |
| 2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 94.72 | |
| 1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase; truncation, based | 94.51 | |
| 2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 | 94.45 | |
| 2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 94.42 | |
| 1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy | 93.86 | |
| 3a04_A | 372 | Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR | 92.98 | |
| 2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 92.02 | |
| 2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 91.54 | |
| 1y42_X | 392 | Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR | 90.83 | |
| 3prh_A | 388 | Tryptophanyl-tRNA synthetase; TRPRS, protein biosy | 90.76 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 90.53 | |
| 2j5b_A | 348 | Tyrosyl-tRNA synthetase; ligase, protein biosynthe | 88.33 | |
| 3sz3_A | 341 | Tryptophanyl-tRNA synthetase; structural genomics, | 87.51 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 86.8 | |
| 3prh_A | 388 | Tryptophanyl-tRNA synthetase; TRPRS, protein biosy | 86.43 | |
| 2j5b_A | 348 | Tyrosyl-tRNA synthetase; ligase, protein biosynthe | 86.29 | |
| 2cyc_A | 375 | Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy | 85.98 | |
| 3p0j_A | 690 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 85.92 | |
| 3n9i_A | 346 | Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga | 85.13 | |
| 3sz3_A | 341 | Tryptophanyl-tRNA synthetase; structural genomics, | 85.1 | |
| 2cyc_A | 375 | Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy | 84.06 | |
| 3p0j_A | 690 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 82.18 | |
| 3n9i_A | 346 | Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga | 81.64 | |
| 1lko_A | 191 | Rubrerythrin all-iron(II) form; reduced form, DIIR | 80.84 |
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-109 Score=921.59 Aligned_cols=536 Identities=31% Similarity=0.600 Sum_probs=497.1
Q ss_pred CeEEEEcCCCCCCCcccchHhhh-HHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIME-YIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~-~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
++|+|++|||||||.+||||+++ ++++|+++||+||+| ++|.|++|||+||+||+.+|++.|.+|+++++++.+
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G-----~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~ 76 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKG-----EDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHE 76 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcC-----CceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 68999999999999999999998 999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 91 NRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 91 ~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
.|+++|++|||++|.|++|+++.|.+.++++|.+|+ ++|+||++..++|||+.|+++|+|++|+|+||.|+.++++|+.
T Consensus 77 ~~~~~~~~lgis~D~~~rT~d~~~~~~v~~~f~~L~-~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~ 155 (722)
T 1rqg_A 77 QIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAY-ENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQ 155 (722)
T ss_dssp HHHHHHHHHTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTT
T ss_pred HHHHHHHHhCCCCCCCeeCCCHHHHHHHHHHHHHHH-HCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcch
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~is 250 (576)
|+.||+.+++.+|++|+|||||++++++.++||||+| +++++.+.++ +++..||+..++++.+||+ .|++|||||
T Consensus 156 c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l--~~~~~~l~~~-~~~~~wp~~~~~~~~~wl~--~gl~dw~IS 230 (722)
T 1rqg_A 156 CEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKM--QDFAERLKRW-IEKQPWKPNVKNMVLSWIE--EGLEERAIT 230 (722)
T ss_dssp CSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECG--GGTHHHHHHH-HHSSCCCHHHHHHHHHHHT--TCCCCEECE
T ss_pred hhhcccccChhhccCCcccCCCcEeEEEEeccEEEEh--HHHHHHHHHH-HHhCCCCHHHHHHHHHHHH--CCCccccee
Confidence 9999999999999999999999999999999999999 9999999999 7766699999999999996 699999999
Q ss_pred cCCCCCCeecCC----CCCcEEEEEeecccchhhhcchhhhhCCCCCccccccccccccc--CCCcceEEEeeecCcchh
Q psy2393 251 RDAPYFGIKIPN----TLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFIS--SPNTEQYHFIGKDIFYFH 324 (576)
Q Consensus 251 R~~~~WG~~iP~----~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~--~~~~~~i~~~G~D~~~fh 324 (576)
|++ +||+|+|. .+++++|||||++++|++..+.+++..|.+ .+|+.||+ +++...+|++|+|+++||
T Consensus 231 R~~-~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~------~~~~~~w~~pd~~~~~~h~~GkDii~fH 303 (722)
T 1rqg_A 231 RDL-NWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKP------NEWKKYWLNIDGQTRVIHFIGKDNIPFH 303 (722)
T ss_dssp ECC-SSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCT------TTTHHHHBCSSCCEEEEEEEEGGGHHHH
T ss_pred ccc-cCccccCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCc------hHHHhccCCCCCCCeeEEEccccccccc
Confidence 998 99999995 789999999999999998877677666532 46888997 777778999999999999
Q ss_pred HhHHHHHHHhcC----------CCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCc
Q psy2393 325 ILFWPAILKFSG----------RKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDI 394 (576)
Q Consensus 325 ~~~~~a~l~~~~----------~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~ 394 (576)
..+|||++++++ .+.|+++++||||+++|+|||||+||+|+|.++++. ||+|++|||+++.++. .+|+
T Consensus 304 ~~~wpA~l~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~-ygaDalR~~ll~~~~~-~~D~ 381 (722)
T 1rqg_A 304 AIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDV-FPADYLRYYLTTIMPE-TRDS 381 (722)
T ss_dssp HTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTT-SCHHHHHHHHHHTCCS-SSCE
T ss_pred hhhhHHHHhccCCCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHh-cCchHHHHHHHhcCCC-CCCC
Confidence 999999999875 678899999999999999999999999999999999 9999999999997554 5899
Q ss_pred ccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC--cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy2393 395 DFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM--KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVI 471 (576)
Q Consensus 395 ~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~--~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~ 471 (576)
+||++.+.+..|++++++++|+++|+.+++.+++++.++. .+.. | .++++.+..+.+.+.++|++|+|+.|++.|+
T Consensus 382 ~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~~~~~~d-~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~ 460 (722)
T 1rqg_A 382 DFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGELDELD-REALEEIEKAFKEVGELIMNYRFKDALKRVM 460 (722)
T ss_dssp EECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCHHH-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999889999999999999999999887766653 2222 5 8999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcc-cccccccCCCCCc
Q psy2393 472 EQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPL-QWINIFTPLTQNH 550 (576)
Q Consensus 472 ~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~-~~~~~~~~~~~g~ 550 (576)
+|++.+|+|++.++||.+.++ ...++++++++++++++.+++||+|||||+||+||+.||.+.. .|+.. .+++||
T Consensus 461 ~~~~~~n~Yi~~~kpw~~~k~--~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~~~~~w~~~--~~~~g~ 536 (722)
T 1rqg_A 461 SLASFGNRYFDHKQPWKTAKE--DKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEVKRWEFR--ELPAGH 536 (722)
T ss_dssp HHHHHHHHHHHTTCHHHHTTT--CHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSCCCSSCC--CCCTTC
T ss_pred HHHHHHHHHHHhcCchhhcCC--CHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCCcccCchhc--cCCCCC
Confidence 999999999999999988754 3456778889999999999999999999999999999998765 78763 246799
Q ss_pred ccCCCCCCccCCChHHHHHHHh
Q psy2393 551 KINKYRHLMTRVDKNIVDNLLK 572 (576)
Q Consensus 551 ~~~~~~~lf~r~d~~~~~~~~~ 572 (576)
.++++++||+|||.++++++.+
T Consensus 537 ~~~~~~~lf~ri~~~~~~~~~~ 558 (722)
T 1rqg_A 537 KVRKPEILFKKVTDDQIIYFIL 558 (722)
T ss_dssp BCCCCCCSCCCCCHHHHHHHHH
T ss_pred CcCCCCCCcCCCCHHHHHHHHh
Confidence 9999999999999999987764
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-108 Score=899.63 Aligned_cols=546 Identities=44% Similarity=0.843 Sum_probs=506.1
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHH
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~ 87 (576)
++++++|+||+|||||||++||||+|+++++|+++||++++| ++|.+++|+|+||+||+.+|++.|+++++++++
T Consensus 14 ~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~ 88 (560)
T 3h99_A 14 TQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRG-----HEVNFICADDAHGTPIMLKAQQLGITPEQMIGE 88 (560)
T ss_dssp ---CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcC-----CeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHH
Confidence 457789999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCC
Q psy2393 88 ISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY 167 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~ 167 (576)
+.+.|+++|++|||++|.+++|+++.|.+.++++|.+|. ++|++|++++.+|||+.|+++|++++|+|+||.|+..+++
T Consensus 89 ~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~-~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~ 167 (560)
T 3h99_A 89 MSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLK-ENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQY 167 (560)
T ss_dssp HHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEE
T ss_pred HHHHHHHHHHHcCCCCCCceeCCCHHHHHHHHHHHHHHH-HCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccc
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCc
Q psy2393 168 GDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDW 247 (576)
Q Consensus 168 g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw 247 (576)
|+.|+.||+.+++.++++|+|++||++++.+.++||||++ +++++.+.++ +++..+||..++.+.+|++ .+++||
T Consensus 168 gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~--~~l~D~ 242 (560)
T 3h99_A 168 GDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDL--PSFSEMLQAW-TRSGALQEQVANKMQEWFE--SGLQQW 242 (560)
T ss_dssp TTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECG--GGGHHHHHHH-HHTSCSCHHHHHHHHHHHH--HCCCCE
T ss_pred cchhhhccccCChhhhcCCccccCCCCceEEecceEEEEH--HHHHHHHHHH-HHhCCCCHHHHHHHHHHHh--cCCCCC
Confidence 9999999999999999999999999999999999999999 9999999999 7778899999999999998 799999
Q ss_pred ccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCccccccccccccc-CCCcceEEEeeecCcchhHh
Q psy2393 248 DISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFIS-SPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 248 ~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~-~~~~~~i~~~G~D~~~fh~~ 326 (576)
||||+..+||+|+|.++++++|||||++++|++..+.++...|.. .+|+.||| +.+++++|++|+||++||++
T Consensus 243 ~IsR~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~------~~~~~~wp~~~~~~~~~~~G~D~~~fh~~ 316 (560)
T 3h99_A 243 DISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDS------VSFDEYWKKDSTAELYHFIGKDIVYFLSL 316 (560)
T ss_dssp ECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCS------SHHHHHHBTTCCSEEEEEEEGGGHHHHHT
T ss_pred CccccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCCh------hhHHHhCcCCCCceeEEEeccccchhHHH
Confidence 999998789999999999999999999999999887666554421 57888994 55678899999999999999
Q ss_pred HHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhh
Q psy2393 327 FWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406 (576)
Q Consensus 327 ~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~ 406 (576)
+|+++++++|++.|+.+++||||+++|+|||||+||+|+|.|++++ ||+|++|||+++..+....|++|+++.+.+..|
T Consensus 317 ~~~a~l~~~g~~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~ 395 (560)
T 3h99_A 317 FWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVN 395 (560)
T ss_dssp HHHHHHHHTTBCCCSEEEEECCEEETTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEEeEEEeCCeeccccCCCcCCHHHHHHH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 999999999999866555789999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCc
Q psy2393 407 SDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKP 486 (576)
Q Consensus 407 ~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~ 486 (576)
++++++++|+++|+.+++.+++++.++.. ..| .|+++.+..+++.+.++|++|+|+.|+++|++|++.+|+|++.++|
T Consensus 396 ~~l~~~l~n~~~R~~~~~~~~~~~~~~~~-~~d-~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~kp 473 (560)
T 3h99_A 396 ADIVNKVVNLASRNAGFINKRFDGVLASE-LAD-PQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAP 473 (560)
T ss_dssp HHCCCCCTHHHHTTHHHHHHHSTTBCCSS-CSC-HHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCc-ccc-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999988876665542 236 9999999999999999999999999999999999999999999999
Q ss_pred cccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcccccccccCCCCCcccCCCCCCccCCChHH
Q psy2393 487 WKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHKINKYRHLMTRVDKNI 566 (576)
Q Consensus 487 ~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~~~~~~~~~~~~g~~~~~~~~lf~r~d~~~ 566 (576)
|.+.+++....++.+++.++.++++.+++||+|||||+||+||+.||.+ ..|+.....+ .|+.++++++||+|||.++
T Consensus 474 w~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~-~~w~~~~~~~-~~~~i~~~~~lf~ri~~~~ 551 (560)
T 3h99_A 474 WVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE-LTWDGIQQPL-LGHKVNPFKALYNRIDMRQ 551 (560)
T ss_dssp HHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC-CCTGGGGSCC-CSCBCCCCSCSCCCCCHHH
T ss_pred hhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC-CChhhhhccC-CCCCCCCCCcCCCCCCHHH
Confidence 9776543345566778888999999999999999999999999999998 8898776655 5999999999999999999
Q ss_pred HHHHHhccC
Q psy2393 567 VDNLLKNKN 575 (576)
Q Consensus 567 ~~~~~~~~~ 575 (576)
|+++++..|
T Consensus 552 ~~~~~~~~~ 560 (560)
T 3h99_A 552 VEALVEASK 560 (560)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHhhcC
Confidence 999998654
|
| >3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-100 Score=836.08 Aligned_cols=520 Identities=23% Similarity=0.393 Sum_probs=452.2
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
+..++|+||+|+|||||.||||||++++++|+++||+||+| ++|.|++||||||+||+.+|+++|++|++++++|
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G-----~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~ 80 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKG-----ERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAV 80 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTT-----CCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcC-----CCccccCccCcChHHHHHHHHHcCCCHHHHHHHH
Confidence 46689999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCC
Q psy2393 89 SSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYG 168 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g 168 (576)
.+.|++++++|||++|.+++|++++|.+.++++|.+|+ ++|+||++...++||+.|+++|++++|++.|+.||
T Consensus 81 ~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~-~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g------ 153 (542)
T 3u1f_A 81 AGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLE-QKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDG------ 153 (542)
T ss_dssp HHHHHHHHHHHTCCCSEEEETTCHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTS------
T ss_pred HHHHHHHHHHhCCccCcCccCCCHHHHHHHHHHHHHHh-hcCcEEecceeEEeeccCcccchhhhhhccccccC------
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999998665
Q ss_pred CccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC---CCChhHHHHHHHHHhhcCCCC
Q psy2393 169 DFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK---RLQPEIVNKIKEWLEKDNKFN 245 (576)
Q Consensus 169 ~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~ 245 (576)
+.| ++|++||++++.+.++|||+++ +++++.+.++ ++.. .+|+..++...+|++ ++++
T Consensus 154 ~~~--------------~~~~~sg~~ve~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~~~P~~~~~~~~~~~~--~~l~ 214 (542)
T 3u1f_A 154 NPC--------------KVSLESGHVVTWVSEENYMFRL--SAFRERLLEW-YHANPGCIVPEFRRREVIRAVE--KGLP 214 (542)
T ss_dssp CEE--------------EEETTTCCBEEEEEEEEEEECG--GGGHHHHHHH-HHHCTTSEESHHHHHHHHHHHH--HCCC
T ss_pred ccc--------------cccCCCCCcceeeccccceecc--hhHHHHHHHH-HhhcccccCCchhhHhHhhhhh--cccc
Confidence 334 5789999999999999999999 9999999999 5442 357778889999998 7899
Q ss_pred CcccccCCCC----CCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCc
Q psy2393 246 DWDISRDAPY----FGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIF 321 (576)
Q Consensus 246 dw~isR~~~~----WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~ 321 (576)
|||||||+ + ||+|+|.++++++|||+|++.+|++..+......|....+.++......||.+ +|++|+||+
T Consensus 215 Dw~ISRq~-~~~~~WGipiP~~~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d----~~~~G~D~~ 289 (542)
T 3u1f_A 215 DLSVSRAR-ATLHNWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPAD----VHVIGKDIL 289 (542)
T ss_dssp CEECEEEG-GGGTTCSCEETTEEEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCS----EEEEEGGGH
T ss_pred ccCccccc-cCcCCCCCccCCCcCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcce----EEEeccccc
Confidence 99999998 5 99999999999999999999999988776655554321111111111223433 999999999
Q ss_pred chhHhHHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhH
Q psy2393 322 YFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSF 401 (576)
Q Consensus 322 ~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~ 401 (576)
+||+.+|+|++++.|.++|+.+++||||..+|+|||||+||+|+|.+++++ ||+|+||||+++.++ ...|++||++.+
T Consensus 290 ~fh~~~~~a~l~~~g~~~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~~-ygaD~lR~~l~~~~~-~~~d~~fs~~~~ 367 (542)
T 3u1f_A 290 KFHAIYWPAFLLSAGLPLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEE-FGYDALKYFLLRESG-FSDDGDYSDKNM 367 (542)
T ss_dssp HHHHTHHHHHHHHHTCCCCSCEEEECCCEETTBCCBTTTTBCCCHHHHHHH-HCHHHHHHHHHHHCC-TTSCCEECHHHH
T ss_pred ccccchhHHHHHhhcccccceeccccceecCCceeccccCCCCChhHHHhh-cCchHHHHHHHhcCc-ccccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999998755 458899999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC--cccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy2393 402 ISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM--KWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINI 479 (576)
Q Consensus 402 ~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~ 479 (576)
.+..|++++++++|+++|+..+..+ .++.++. .+...++|+++.+..+.+.+.++|++|+|++|++.|++|++.+|+
T Consensus 368 ~~~~n~~l~n~l~N~~~r~~~~~~~-~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~ 446 (542)
T 3u1f_A 368 IARLNGELADTLGNLVMRCTSAKIN-VNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINA 446 (542)
T ss_dssp HHHHHHTTTTTHHHHHHHHHCTTTS-TTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhc-ccCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988899999999999998765432 3344433 222223999999999999999999999999999999999999999
Q ss_pred hhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcccc---cccc-cCCCCCcccCC-
Q psy2393 480 FFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQW---INIF-TPLTQNHKINK- 554 (576)
Q Consensus 480 y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~~~---~~~~-~~~~~g~~~~~- 554 (576)
|++..+||.+.+++ ..++++++++++++++.+++||+|||||+||+||+.||++...+ +... ..+++||.|++
T Consensus 447 Y~~~~~pw~l~k~d--~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~~~~~~~~~~~~~~l~~g~~i~~~ 524 (542)
T 3u1f_A 447 YVTDMAPWKLVKTD--PERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIENFEFGAVPPGTRLGPA 524 (542)
T ss_dssp HHHHHCHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGGSSGGGGSTTCSCTTCBCCCC
T ss_pred HHHhcCchhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCCCCccccchhhccccCCCCCCCcCCc
Confidence 99999999876543 45678889999999999999999999999999999999986433 2222 34678999964
Q ss_pred --CCCCccCCChHHHHH
Q psy2393 555 --YRHLMTRVDKNIVDN 569 (576)
Q Consensus 555 --~~~lf~r~d~~~~~~ 569 (576)
+++||+|||.|++++
T Consensus 525 ~~~~~LF~kie~e~~e~ 541 (542)
T 3u1f_A 525 VEGEVLFSKRSTENTKS 541 (542)
T ss_dssp CTTCCSSCCCCCCC---
T ss_pred CCCCCCcCCCChhhhhc
Confidence 579999999988764
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-98 Score=817.53 Aligned_cols=522 Identities=24% Similarity=0.399 Sum_probs=456.4
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
+++++++||+|+|||||++||||+|+++++|+++||+|++| ++|.+++|+|+||++|+.+|++.|.+|+++++++
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G-----~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~ 97 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKG-----EEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSV 97 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHT-----CCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-----CcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHH
Confidence 45689999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCC
Q psy2393 89 SSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYG 168 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g 168 (576)
.+.|+++|++|||++|.|++|+++.|.+.++++|.+|+ ++|+||++...+|||+.|+++++++++...|+.+ |
T Consensus 98 ~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~-~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~------g 170 (564)
T 3kfl_A 98 SSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLA-AKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRD------G 170 (564)
T ss_dssp HHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HHTCEEEEEEEEEEETTTTEEECGGGEEEEECTT------S
T ss_pred HHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHHHHHH-HCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCC------C
Confidence 99999999999999999999999999999999999999 9999999999999999999999999998877533 3
Q ss_pred CccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC--CC-CChhHHHHHHHHHhhcCCCC
Q psy2393 169 DFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD--KR-LQPEIVNKIKEWLEKDNKFN 245 (576)
Q Consensus 169 ~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~--~~-~~~~~~~~~~~~l~~~~~~~ 245 (576)
..|. .+.+||++++.+.++||||+| +++++.+.++ +++ .+ +|+..++.+.+|++ .|++
T Consensus 171 ~~c~--------------~~~~~g~~~~~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~i~P~~~~~~~~~wl~--~gl~ 231 (564)
T 3kfl_A 171 KPCK--------------VSLESGHVVTWVEEENYMFRL--SAFRERLLKY-FHDHPNCIVPEFRRREVIKTVE--KGLF 231 (564)
T ss_dssp CEEE--------------EETTTSCBCEEEEEEEEEECG--GGGHHHHHHH-HHHCTTSEESHHHHHHHHHHHH--HCCC
T ss_pred CEec--------------cccCCCCccEEEecceeEEEH--HHHHHHHHHH-HHhCCCccCCHHHHHHHHHHHh--CCCC
Confidence 3342 123689999999999999999 9999999999 654 23 57778899999998 8999
Q ss_pred Cccccc----CCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccc--cccccCCCcceEEEeeec
Q psy2393 246 DWDISR----DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNF--DEFISSPNTEQYHFIGKD 319 (576)
Q Consensus 246 dw~isR----~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~w~~~~~~~i~~~G~D 319 (576)
|||||| +. +||+|+|+++++++||||||+++|++.++++..+.+.. .-..+| +.+||.+ +|++|+|
T Consensus 232 D~~ISR~~~~~~-~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~---~~~~~~~~~~~wp~d----v~~~GkD 303 (564)
T 3kfl_A 232 DLSISRKRESVM-NWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTE---TLDEDHHALNRWPAD----VHVVGKD 303 (564)
T ss_dssp CEECEEEGGGGT-TCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCE---EECSSSTTTTCCSCS----EEEEEGG
T ss_pred CccccCcCCCCC-CCCeecCCCCCCEEEEeccCcHHHHHHhCccccccccc---cchhcchhhhcCccc----eEEEeec
Confidence 999999 55 99999999999999999999999999876544332200 000137 7899764 9999999
Q ss_pred CcchhHhHHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchh
Q psy2393 320 IFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQ 399 (576)
Q Consensus 320 ~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~ 399 (576)
|++||+++|+++++++|.++|+.+++||||..+|+|||||+||+|+|.+++++ ||+|++|||+++..+.. +|++||++
T Consensus 304 ii~FH~~~wpa~L~a~g~~~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~-~G~DalR~~ll~~~~~~-~D~~fs~~ 381 (564)
T 3kfl_A 304 ILKFHAIYWPAFLMSAELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKE-FGIDALKYFLMRESNFQ-DDGDYSDK 381 (564)
T ss_dssp GHHHHHTHHHHHHHHTTCCCCSCEEEECCEEETTEECCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHCCSS-CCEECCHH
T ss_pred ccchHHHHHHHHHHhCCCCCCcEEEEcccEeeCCccccccCCCCCCHHHHHHH-cCcHHHHHHHHHcCCcc-cCCCCCHH
Confidence 99999999999999999999999999999988999999999999999999999 99999999999965544 88999999
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCc--ccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2393 400 SFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMK--WVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFI 477 (576)
Q Consensus 400 ~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~--~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~ 477 (576)
.+.+..|++++++++|+++|+.+++. ++++.+|.. +...+.++++.+..+.+.+.++|++++|++|+++|++|+..+
T Consensus 382 ~~~~~~n~~l~~~l~N~~~R~~~~~~-~~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~ 460 (564)
T 3kfl_A 382 NMVARLNGELADTLGNLVSRCVAPKI-NVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSL 460 (564)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHCTTT-STTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 99998889999999999999999887 556656542 222239999999999999999999999999999999999999
Q ss_pred HHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc--c-cccccccC-CCCCcccC
Q psy2393 478 NIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP--L-QWINIFTP-LTQNHKIN 553 (576)
Q Consensus 478 n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~--~-~~~~~~~~-~~~g~~~~ 553 (576)
|+|++.++||.+.++ ...+++++++++.+++++++++|+||||++||+||+.||.+. . .|+.+... +++||.|+
T Consensus 461 n~Y~~~~kpW~l~~~--~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~~~~~~~~~~g~~~~ 538 (564)
T 3kfl_A 461 NAYVTENAPWKLVKM--DTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARVGMENYLFGIVKPGTKIA 538 (564)
T ss_dssp HHHHHHHCHHHHTTT--CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGSSSGGGSSSCCSCTTCBCC
T ss_pred HHHHHhcCChhhhcC--CHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCcccccCHhHhhcccCCCCCCcC
Confidence 999999999987654 345677888999999999999999999999999999999974 3 68776543 67899999
Q ss_pred CC---CCCccCCChHHHHHHHhcc
Q psy2393 554 KY---RHLMTRVDKNIVDNLLKNK 574 (576)
Q Consensus 554 ~~---~~lf~r~d~~~~~~~~~~~ 574 (576)
++ ++||+|||.++++++.+++
T Consensus 539 ~~~~~~~lf~r~~~~~~~~~~~~~ 562 (564)
T 3kfl_A 539 GLAEGQVVFQKVTLPTEEGERSSK 562 (564)
T ss_dssp CCCTTCCSSCCCCCC---------
T ss_pred CCCCCCCCcCCCCcchhhhhhhcc
Confidence 99 9999999999999988765
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-95 Score=796.22 Aligned_cols=505 Identities=24% Similarity=0.405 Sum_probs=436.2
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
+++++||+|+|||||++||||+|+++++|+++||+|++| ++|.+++|+||||++|+.+|++.|.+|+++++++.+
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G-----~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~ 98 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNG-----MDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTS 98 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcC-----CcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 91 NRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 91 ~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
.|+++|++|||++|.|++|+++.|.+.++++|.+|. ++|++|++.+.+|||+.|++++++++++.. ..|.
T Consensus 99 ~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~-~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~--------~~g~- 168 (536)
T 4dlp_A 99 AFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMV-ANGDIYKGGYAGWYSVRDEAYYGEEETEVR--------ADGV- 168 (536)
T ss_dssp HHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEEECGGGCEEC--------TTSC-
T ss_pred HHHHHHHHcCCCCCcceeCCCHHHHHHHHHHHHHHH-HCCCEEEeceeeeecCCcCcccCHHHhhcC--------CCCC-
Confidence 999999999999999999999999999999999999 999999999999999999999999987532 0121
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC--C-CChhHHHHHHHHHhhcCCCCCc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK--R-LQPEIVNKIKEWLEKDNKFNDW 247 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~--~-~~~~~~~~~~~~l~~~~~~~dw 247 (576)
+|++||++++.+.++||||++ +++++.+.++ +++. + .|+..++.+.+|++ ++++||
T Consensus 169 ----------------~c~~~g~~~e~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~i~P~~~~~~~~~~l~--~~l~D~ 227 (536)
T 4dlp_A 169 ----------------RYGPQGTPVEWVEEESYFFRL--SAYQDKLLDL-YENNPGFIMPAERRNEIVSFVK--SGLKDL 227 (536)
T ss_dssp ----------------EECTTSSBCEEEEEEEEEECG--GGGHHHHHHH-HHHCTTSEESHHHHHHHHHHHH--TCCCCE
T ss_pred ----------------cccCCCCcceEEeccceEEec--HHHHHHHHHH-HHhCCCccCcHHHHHHHHHHHh--cCCCcc
Confidence 466788999999999999999 9999999999 6553 3 47778899999999 899999
Q ss_pred ccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhH
Q psy2393 248 DISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILF 327 (576)
Q Consensus 248 ~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~ 327 (576)
||||++.+||+|+|+++++++|||||++++|++.++. ... ..+|+.+||.+ +|++|+||++||+++
T Consensus 228 ~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~-~~~---------~~~~~~~~p~d----v~~~G~D~~~fh~~~ 293 (536)
T 4dlp_A 228 SISRTTFDWGIPVPGDEKHVMYVWVDALTNYITALGY-PDT---------TDERWAYWPAN----AHIIGKDISRFHAVY 293 (536)
T ss_dssp ECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTTTT-TCT---------TSGGGGGCSCS----EEEEEGGGHHHHHTH
T ss_pred CCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCC-CCC---------chHHHhhCCcc----eEEeechHHHHHHHH
Confidence 9999976899999999999999999999999987652 211 14688899764 999999999999999
Q ss_pred HHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhH
Q psy2393 328 WPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNS 407 (576)
Q Consensus 328 ~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~ 407 (576)
|+++++++|.++|+.+++||||+++|+|||||+||+|+|.+++++ ||+|++|||+++..+. ..|++||++.+.+..|+
T Consensus 294 ~~a~l~a~g~~~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~~-~GaDalR~~ll~~~~~-~~d~~fs~~~~~~~~n~ 371 (536)
T 4dlp_A 294 WPAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVER-YGLDQLRYFLMREVPF-GQDGSYSHEAIVNRTNA 371 (536)
T ss_dssp HHHHHHHTTCCCCSCEEEECCEEC------------CCHHHHHHH-HCHHHHHHHHHHHSCT-TSCEECCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcEEEeeeeEeeCCceecccCCCCCCHHHHHHH-cCcHHHHHHHHhcCCC-CCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999996444 47899999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCc--ccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 408 DLIGKYINIASRSSSFIEKYFKGYLNMK--WVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 408 ~~~~~~~n~~~R~~~~~~~~~~~~~~~~--~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
+++++++|+++|+.+++.+++++.+|.. +...++|+++.+.++.+.+.++|++|+|++++++|++|++.+|+|++.++
T Consensus 372 ~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k 451 (536)
T 4dlp_A 372 DLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQE 451 (536)
T ss_dssp HCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999988877666542 22223999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc--cccccccc-CCCCCcccCCCCCCccCC
Q psy2393 486 PWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP--LQWINIFT-PLTQNHKINKYRHLMTRV 562 (576)
Q Consensus 486 ~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~--~~~~~~~~-~~~~g~~~~~~~~lf~r~ 562 (576)
||.+.++ ...+++++++++.++++.++++|+||||++||+||+.||++. ..|+.+.. .+++||.|+++++||+||
T Consensus 452 ~w~l~~~--~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~~~~~~~~~~~~~~~~~g~~~~~~~~lf~ri 529 (536)
T 4dlp_A 452 PWALRKT--DPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADKRQFADVLASPLAGGTDLPAPQPVFPRY 529 (536)
T ss_dssp HHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCCTTSCSTHHHHHCCCCTTCBCCCCCCSSCCC
T ss_pred chhhcCC--CHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCCccccCHHHhhhccCCCCCCcCCCCCCCCCC
Confidence 9877543 234567788999999999999999999999999999999974 46766543 367899999999999999
Q ss_pred ChHHHHH
Q psy2393 563 DKNIVDN 569 (576)
Q Consensus 563 d~~~~~~ 569 (576)
|.++.|+
T Consensus 530 ~~~~~~~ 536 (536)
T 4dlp_A 530 VEADEQN 536 (536)
T ss_dssp C------
T ss_pred CCcccCC
Confidence 9877653
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-91 Score=763.78 Aligned_cols=509 Identities=23% Similarity=0.415 Sum_probs=443.2
Q ss_pred CCcccCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHH
Q psy2393 4 HDSEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKE 83 (576)
Q Consensus 4 ~~~~~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~ 83 (576)
++---.+++.++|++|+|||||++||||+|+++++|+++||++++| ++|.+++|||+||+||+.+|++.|.++++
T Consensus 4 ~~~~~~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~ 78 (524)
T 2x1l_A 4 HHHHHGGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDG-----YDVRYLTGTDVHGQKMAETAAKEGIPAAE 78 (524)
T ss_dssp -------CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCSHHHHHHHHHHTSCHHH
T ss_pred cccccCCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcC-----CceeeeCCcCcccHHHHHHHHHcCCCHHH
Confidence 3334567789999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceec-cCCCCC
Q psy2393 84 FINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKG-ECPICN 162 (576)
Q Consensus 84 ~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~-~~p~c~ 162 (576)
+++++.+.|++++++|||++|.+++|+++.|.+.++++|.+|+ ++|++|++++.+|||+.|++++++.+|+. .|
T Consensus 79 ~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~-~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~---- 153 (524)
T 2x1l_A 79 LARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMA-DAGDIYLDAYKGWYSIRDERFFTENETTEQPD---- 153 (524)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEEECGGGEEECTT----
T ss_pred HHHHHHHHHHHHHHHcCCcCCCCeecCCHHHHHHHHHHHHHHH-HCCCEEeeeeeeeccCccCccccHHHhccCCC----
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999998853 22
Q ss_pred CCCCCCCccccCCCcCCCCccCCCccc-CCCCccEEeeecceeEecCchhhHHHHHHhhhcCC---CCChhHHHHHHHHH
Q psy2393 163 AKDQYGDFCECCSSIYTPTKLINPYSI-LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK---RLQPEIVNKIKEWL 238 (576)
Q Consensus 163 ~~~~~g~~c~~cg~~~~~~~l~~p~~~-~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l 238 (576)
| +.|+ +||++++.+.++|||+++ +++++.+.++ +++. ..|+..++.+.+|+
T Consensus 154 ------------G----------~~c~~~~g~~v~~~~~~qwF~~l--~~~~~~l~~~-~~~~~~~i~p~~~~~~~~~~~ 208 (524)
T 2x1l_A 154 ------------G----------TRIATETGAPVTWTEEQTYFFRL--SAYTDRLLAL-YEEHPEFIGPDARRNEIVSFV 208 (524)
T ss_dssp ------------S----------CEEETTTCCBEEEEEEEEEEECG--GGSHHHHHHH-HHHCGGGEESHHHHHHHHHHH
T ss_pred ------------C----------CccccccCCcceEEecCCeEeeH--HHHHHHHHHH-HHhCCCeeCCHHHHHHHHHHH
Confidence 1 2567 899999999999999999 9999999999 6542 35777889999999
Q ss_pred hhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeee
Q psy2393 239 EKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGK 318 (576)
Q Consensus 239 ~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~ 318 (576)
. .+++|||||||+..||+|+|..+++++|||||++.+|++..+. ..+. ...+..+||.+ +|++|+
T Consensus 209 ~--~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~-p~~~--------~~~~~~~~p~d----i~~~G~ 273 (524)
T 2x1l_A 209 S--GGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGF-PDTE--------SESFRRYWPAD----LHMIGK 273 (524)
T ss_dssp T--TCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTT-TCTT--------SHHHHHHCSCS----EEEEEG
T ss_pred H--cCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCC-CCCc--------hHHHHhhCCCe----EEEEee
Confidence 7 6899999999985699999987889999999999999876542 1111 12567788654 999999
Q ss_pred cCcchhHhHHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccch
Q psy2393 319 DIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNS 398 (576)
Q Consensus 319 D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~ 398 (576)
||++||+.+|+|+++++|.++|+.+++||||+++|+|||||+||+|+|.|++++ ||+|++|||+++.+ +..+|++||+
T Consensus 274 D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i~~-~g~DalR~~ll~~~-~~~~d~~fs~ 351 (524)
T 2x1l_A 274 DIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDT-FGLDQVRYFLLREV-PFGQDGSYNE 351 (524)
T ss_dssp GGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEECSCSEETTTEESSCHHHHHHH-HCHHHHHHHHHHHS-CTTSCEEECH
T ss_pred chhHhHHHHHHHHHHHCCCCCCcEEEECcEEEeCCcccCCcCCCCCCHHHHHHH-cChHHHHHHHHhcC-CCCCCCCcCH
Confidence 999999999999999999988899999999999999999999999999999999 99999999999853 4558999999
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC--cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2393 399 QSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNM--KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTN 475 (576)
Q Consensus 399 ~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~--~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~ 475 (576)
+.+.+..++.+.++++|+++|+.+++.++.++.++. .... | .++++.+..+.+.+.++|++|+++.|+++|++|+.
T Consensus 352 ~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d-~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~ 430 (524)
T 2x1l_A 352 DAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDED-TALLAAADALLERVREHFDVPAMHLALEAIWSVLG 430 (524)
T ss_dssp HHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHH-HHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhH-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999888777788899999999998887765554442 1222 5 89999999999999999999999999999999999
Q ss_pred HHHHhhhhcCccccccCc--ccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc--ccccccccCCCCCcc
Q psy2393 476 FINIFFDQNKPWKLAKNN--IYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP--LQWINIFTPLTQNHK 551 (576)
Q Consensus 476 ~~n~y~~~~k~~~~~~~~--~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~--~~~~~~~~~~~~g~~ 551 (576)
.+|+|++.++||.+.++. ....+++++++++.++++.++++|+|||||+||+||+.||.+. ..|+.+...+++||.
T Consensus 431 ~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2x1l_A 431 AANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQPTDERDFSAIANRIKPGTS 510 (524)
T ss_dssp HHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCCTTSCSGGGGSSCCCTTCB
T ss_pred HHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCCccccchhHhhhcCCCCCC
Confidence 999999999998765431 1234567788899999999999999999999999999999874 578765434667999
Q ss_pred cCCCCCCccCCChH
Q psy2393 552 INKYRHLMTRVDKN 565 (576)
Q Consensus 552 ~~~~~~lf~r~d~~ 565 (576)
|+++++||+||+.+
T Consensus 511 ~~~~~~lf~~~~~~ 524 (524)
T 2x1l_A 511 LPAPSGIFPRYQND 524 (524)
T ss_dssp CCCCCCSSCCCC--
T ss_pred CCCCCCCCCCCCCC
Confidence 99999999999864
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-90 Score=747.07 Aligned_cols=488 Identities=25% Similarity=0.441 Sum_probs=407.2
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
+++++||.|+|||||++||||+|+++++|+++||++++| ++|.+++|+|+||+||+.+|++.|.+++++++++.+
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 78 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRD-----YDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAE 78 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcC-----CceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 91 NRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 91 ~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
.|+++|++|||++|.+++|+++.|.+.++++|.+|+ ++|++|++...++||+.|++++++.++
T Consensus 79 ~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~-~~G~iY~~~~~~~~~~~~~~~~~~~~~---------------- 141 (497)
T 2csx_A 79 RFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECY-KRGDIYLGEYEGWYCVGCEEFKSEAEL---------------- 141 (497)
T ss_dssp HHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEC---------------------------------
T ss_pred HHHHHHHHhCCcCCCCccCCCHHHHHHHHHHHHHHH-HCCCEEecceeeccCcccCeEccHHHh----------------
Confidence 999999999999999999999999999999999999 999999999999999999888876544
Q ss_pred cccCCCcCCCCccCC-CcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC--CC-ChhHHHHHHHHHhhcCCCCC
Q psy2393 171 CECCSSIYTPTKLIN-PYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK--RL-QPEIVNKIKEWLEKDNKFND 246 (576)
Q Consensus 171 c~~cg~~~~~~~l~~-p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~~~~d 246 (576)
.+ +.|++||++++.+.+.||||++ +++++.+.++ +++. .+ |...++.+.+|++ .+++|
T Consensus 142 -------------~~~~~c~~~~~~~~~~~~~~wf~~l--~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~~l~--~~~~D 203 (497)
T 2csx_A 142 -------------AEDHTCPIHQKKCEYIKEPSYFFRL--SKYQDKLLEL-YEKNPEFIQPDYRRNEIISFVK--QGLKD 203 (497)
T ss_dssp -----------------------------CCEEEEECT--TSSHHHHHHH-HHHCTTSBCSHHHHHHHHHHHH--HCCCC
T ss_pred -------------ccCCCCCCCCCCCeEEecCceEEEc--HHHHHHHHHH-HHhCCCeeCcHHHHHHHHHHHh--cCCcc
Confidence 33 5677888899999999999999 9999999999 6553 44 5556788899997 68999
Q ss_pred ccccc--CCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchh
Q psy2393 247 WDISR--DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFH 324 (576)
Q Consensus 247 w~isR--~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh 324 (576)
||||| ++..||+|+|.++++++|||||+..+|++.+.. .. ..+||.+ +|++|+||++||
T Consensus 204 w~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~--------------~~-~~~~p~d----i~~~G~D~~~~H 264 (497)
T 2csx_A 204 LSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALED--------------KV-EIYWPAD----LHLVGKDILRFH 264 (497)
T ss_dssp EECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTT--------------TH-HHHCSCS----CEEEEGGGHHHH
T ss_pred ccccccCCCCCCceecCCCCCceEEEecccchhhcccCCC--------------cc-hhhCCce----EEEeecchhHhH
Confidence 99999 664799999988889999999999988876420 00 1567543 999999999999
Q ss_pred HhHHHHHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhh
Q psy2393 325 ILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISC 404 (576)
Q Consensus 325 ~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~ 404 (576)
+.+|+++++++|.++|+++++||||+++|+|||||+||+|+|+|+++. ||+|++|||+++.+ +...|++||++.+...
T Consensus 265 ~~~~~a~l~~~g~~~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~~-~g~DalR~~ll~~~-~~~~d~~fs~~~l~~~ 342 (497)
T 2csx_A 265 TVYWPAFLMSLGYELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQE-YGLDEVRYFLLREV-PFGQDGDFSKKAILNR 342 (497)
T ss_dssp HTHHHHHHHHHTCCCCSCEEEECCEESSSSBCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHSS-CTTSCEECCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcEEEECcEEEeCCceeCCcCCCCCCHHHHHHH-CCcHHHHHHHHhcC-CcccCCCCChHHHHHH
Confidence 999999999999988999999999999999999999999999999999 99999999999853 4568999999999888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhc
Q psy2393 405 VNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQN 484 (576)
Q Consensus 405 ~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~ 484 (576)
.++.+.++++|+++|+.+++.+..++.++ ...| .++++.+..+.+.+.++|++++++.|+++|++|++.+|+|++.+
T Consensus 343 ~~~~l~~~l~n~~~R~~~~~~~~~~~~~~--~~~d-~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~ 419 (497)
T 2csx_A 343 INGELANEIGNLYSRVVNMAHKFLGGEVS--GARD-EEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEK 419 (497)
T ss_dssp HHHTCCCCCHHHHHHHHHHHHHHSTTCBC--CCCC-TTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCC--chhH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 77788899999999999998876544333 1235 89999999999999999999999999999999999999999999
Q ss_pred CccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcccccccccCCCCCcccCCCCCCccCCCh
Q psy2393 485 KPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHKINKYRHLMTRVDK 564 (576)
Q Consensus 485 k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~~~~~~~~~~~~g~~~~~~~~lf~r~d~ 564 (576)
+||.+.++ ..+.+++++++++.+++++++++|+|||||+||+||+.||.+...|+++..... ||.|+++++||+|||+
T Consensus 420 k~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~~~~~~~~~~~-~~~~~~~~~lf~~~~~ 497 (497)
T 2csx_A 420 QPWALNKE-RKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEKEFLKELKPYSKN-TYKLGERKILFPKREG 497 (497)
T ss_dssp CHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCSCCCSSCCSCCCS-CBCCCCCCCSSCCCCC
T ss_pred Cchhhccc-ccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCCccchhhcccccC-CCcCCCCCCCCCCCCC
Confidence 99976543 234567788899999999999999999999999999999988667765421123 9999999999999974
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-89 Score=744.84 Aligned_cols=489 Identities=23% Similarity=0.412 Sum_probs=434.4
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
++++||+|+|||||++||||+|+++++|+++||+|++| ++|.+++|+|+||+||+.+|++.|.++.++++++.+.
T Consensus 3 ~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 77 (500)
T 2d5b_A 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDG-----YRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGR 77 (500)
T ss_dssp CEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCC-----CceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCcc
Q psy2393 92 RKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFC 171 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c 171 (576)
|+++|++|||++|.+++|+++.|.+.++++|.+|+ ++|++|+++..++||+.|++++++.
T Consensus 78 ~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~-~~G~iy~~~~~~~~~~~~~~~~~~~------------------- 137 (500)
T 2d5b_A 78 FKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVY-EAGDIYYGEYEGLYCVSCERFYTEK------------------- 137 (500)
T ss_dssp HHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEECCTT-------------------
T ss_pred HHHHHHHhCCcCCCCcccCCHHHHHHHHHHHHHHH-HCCCEEecceEEecCCCcCcccCch-------------------
Confidence 99999999999999999999999999999999999 9999999999999999888887754
Q ss_pred ccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC--C-CChhHHHHHHHHHhhcCCCCCcc
Q psy2393 172 ECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK--R-LQPEIVNKIKEWLEKDNKFNDWD 248 (576)
Q Consensus 172 ~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~--~-~~~~~~~~~~~~l~~~~~~~dw~ 248 (576)
+++++.|++||++++.+.++|||+++ +++++.+.++ +++. + .|+..++.+.+|++ ++++|||
T Consensus 138 ----------~l~~g~c~~~~~~v~~~~~~~wf~~l--~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~~l~--~~l~Dw~ 202 (500)
T 2d5b_A 138 ----------ELVEGLCPIHGRPVERRKEGNYFFRM--EKYRPWLQEY-IQENPDLIRPEGYRNEVLAMLA--EPIGDLS 202 (500)
T ss_dssp ----------TSBTTBCTTTCSBCEEEEEEEEEECG--GGGHHHHHHH-HHTCTTSEESHHHHHHHHHHHT--SCCCCEE
T ss_pred ----------hccCCcCCCCCCeeeEEecCceEEEc--HHHHHHHHHH-HHhCCCeeCCHHHHHHHHHHHh--cCCCCee
Confidence 34556788999999999999999999 9999999999 6653 3 37778899999998 7899999
Q ss_pred ccc--CCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHh
Q psy2393 249 ISR--DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 249 isR--~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~ 326 (576)
||| ++..||+|+|.++++++|||||+.++|++..+. . .+.+++.+|+.+ +|++|+||++||+.
T Consensus 203 iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~-~----------~~~~~~~~~p~d----i~~~G~D~~~fh~~ 267 (500)
T 2d5b_A 203 ISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDY-P----------EGEAYRTFWPHA----WHLIGKDILKPHAV 267 (500)
T ss_dssp CEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTT-T----------TCHHHHHHGGGE----EEEEEGGGHHHHHT
T ss_pred cccccccccCccccCCCCCCeeEEccccchhhHHHcCC-C----------CCchHHHcCCCe----EEEEeechhhhHHH
Confidence 999 665799999998999999999999999886542 1 112266678653 99999999999999
Q ss_pred HHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhh
Q psy2393 327 FWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCV 405 (576)
Q Consensus 327 ~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~ 405 (576)
+|+++++++|.++|+++++||||++ +|+|||||+||+|+|.|++++ ||+|++|||+++.+ +...|++||++.+.+..
T Consensus 268 ~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~-~g~DalR~~ll~~~-~~~~d~~fs~~~~~~~~ 345 (500)
T 2d5b_A 268 FWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEK-YGRDALRYYLLREI-PYGQDTPVSEEALRTRY 345 (500)
T ss_dssp HHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHS-CTTSCEECCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHh-cCcHHHHHHHHhcC-CcccCCCCCHHHHHHHH
Confidence 9999999999988899999999999 999999999999999999999 99999999999853 45689999999998887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcC
Q psy2393 406 NSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNK 485 (576)
Q Consensus 406 ~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k 485 (576)
++.+.++++|+++|+.+++.+..++.++.. .+ .++++.+..+.+.+.++|++|+++.|+++|++|++.+|+|++.++
T Consensus 346 ~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~--~~-~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k 422 (500)
T 2d5b_A 346 EADLADDLGNLVQRTRAMLFRFAEGRIPEP--VA-GEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKK 422 (500)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHHSTTBCCCC--CC-CGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCch--hH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777888999999999888877655444321 14 788899999999999999999999999999999999999999999
Q ss_pred ccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC-cccccccc--cCCCCCcccCCCCCCccCC
Q psy2393 486 PWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS-PLQWINIF--TPLTQNHKINKYRHLMTRV 562 (576)
Q Consensus 486 ~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~-~~~~~~~~--~~~~~g~~~~~~~~lf~r~ 562 (576)
||.+.+++ ..+++++++++.+++++++++|+|||||+||+||+.||.+ ...|++.. ..+.+||+++++++||+||
T Consensus 423 ~w~~~~~~--~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~ 500 (500)
T 2d5b_A 423 PWELFKKE--PEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAERWGLAEPRPIPEEAPVLFPKK 500 (500)
T ss_dssp HHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCSSCCGGGGGSSCCSCCCBCCSCCCCSSCCC
T ss_pred chhhccCc--HHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCCcccChhhhhhcccCCCCCCCCCCCCCCCCC
Confidence 99765432 2346678899999999999999999999999999999987 46676532 2356799999999999997
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-81 Score=703.26 Aligned_cols=482 Identities=19% Similarity=0.236 Sum_probs=390.8
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH----cCCCHH--
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK----AGMTPK-- 82 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~----~g~~~~-- 82 (576)
+++++|+|++|||||||.|||||+++++++|+++||+||+| ++|.|++|||+||+||+.++++ .|.++.
T Consensus 31 ~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~ 105 (862)
T 1gax_A 31 SGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRG-----FEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDL 105 (862)
T ss_dssp CCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTT-----SEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCC
T ss_pred CCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCC-----CccccccccCCCCcHHHHHHHHHHHHcCCChHHc
Confidence 45689999999999999999999999999999999999999 9999999999999999999884 465543
Q ss_pred ----------HHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccc
Q psy2393 83 ----------EFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLP 150 (576)
Q Consensus 83 ----------~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~ 150 (576)
++++++.+.++++|++||+++| +.+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|+
T Consensus 106 ~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~-~kGliYrg~~~v~wcp~~~T~Ls 184 (862)
T 1gax_A 106 GREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYY-HEGLAYRAPRLVNWCPRCETTLS 184 (862)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHH-TTSSEEEECCEEEEETTTTEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHH-HCCCEEecccccccCCCcCcccc
Confidence 6789999999999999999665 5666999999999999999999 99999999999999999999999
Q ss_pred ccceec-----------------------------------------------------cCCCCCCC-------------
Q psy2393 151 DRYIKG-----------------------------------------------------ECPICNAK------------- 164 (576)
Q Consensus 151 ~~~v~~-----------------------------------------------------~~p~c~~~------------- 164 (576)
++||++ .||.|+..
T Consensus 185 d~EV~~~e~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~~~V~~~~ 264 (862)
T 1gax_A 185 DLEVETEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDF 264 (862)
T ss_dssp GGGEEECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTTCCTTS
T ss_pred ccccccccccceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCCCCCeeeEEeccccccCC
Confidence 999862 26666532
Q ss_pred ------------------------------CCCCCccccC--CCcCC------------------------CCccCCCcc
Q psy2393 165 ------------------------------DQYGDFCECC--SSIYT------------------------PTKLINPYS 188 (576)
Q Consensus 165 ------------------------------~~~g~~c~~c--g~~~~------------------------~~~l~~p~~ 188 (576)
+..|..|++| |.+-- +.....|+|
T Consensus 265 GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c 344 (862)
T 1gax_A 265 GTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATC 344 (862)
T ss_dssp SSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEE
T ss_pred CCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCee
Confidence 1235567777 64311 112346999
Q ss_pred cCCCCccEEeeecceeEecCchhhHHHHHHhhhc--CC-CCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC---
Q psy2393 189 ILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIH--DK-RLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN--- 262 (576)
Q Consensus 189 ~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~--- 262 (576)
||||++++++.++|||+++ +++++.+.++ ++ +. ++|+..++++.+|++ +++|||||||+ +||+|||.
T Consensus 345 ~R~~~~i~~~~~~qWFv~~--~~~~~~~l~~-v~~~~~~~~P~~~~~~~~~wl~---~l~DW~ISRqr-~WG~pIP~w~~ 417 (862)
T 1gax_A 345 SRCGTPIEYAIFPQWWLRM--RPLAEEVLKG-LRRGDIAFVPERWKKVNMDWLE---NVKDWNISRQL-WWGHQIPAWYC 417 (862)
T ss_dssp TTTCSBCCEEECCEEEECH--HHHHHHHHHH-HHHTCCEESSSHHHHHHHHHHH---TCCCCCCBCCC-SSSCCCCCEEE
T ss_pred cCCCCeEEEEecceEEEEh--HHHHHHHHHH-HHcCCceEcCHHHHHHHHHHHh---cccceeEeccc-CCCcccCceec
Confidence 9999999999999999999 9999999999 64 33 578889999999998 89999999999 99999996
Q ss_pred CCCcEEEEEe------e------------------------cccchhhhcchhhhhCCCCCcccc-cccccccccCCCcc
Q psy2393 263 TLEKYFYVWL------D------------------------APIGYLASLKNFFEKGGPKKKYNE-LRNFDEFISSPNTE 311 (576)
Q Consensus 263 ~~~~~~~vw~------d------------------------~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~w~~~~~~ 311 (576)
.++..++||+ + +...+++..+ +++ ..+++.|||.+
T Consensus 418 ~~~~~i~v~~~~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~-----------~p~~~~~~~~~~P~d--- 483 (862)
T 1gax_A 418 EDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLG-----------WPEETEDLKAFYPGD--- 483 (862)
T ss_dssp TTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGT-----------TTSCCHHHHHSCSBS---
T ss_pred CCCCEEEEeccccccccchhhhhcCchheecCCcccceeeccCCcchhhcc-----------CCCchHHHHhhCCce---
Confidence 2335677776 2 2222222111 121 13456667654
Q ss_pred eEEEeeecCcchhHhHHHHHHH-hcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCC
Q psy2393 312 QYHFIGKDIFYFHILFWPAILK-FSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNN 389 (576)
Q Consensus 312 ~i~~~G~D~~~fh~~~~~a~l~-~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~ 389 (576)
++++|+||++||.....++.. ..|..+++.+++||||++ +|+|||||+||+|+|.+++++ ||+|++|||+++.++
T Consensus 484 -~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR~~ll~~~~- 560 (862)
T 1gax_A 484 -VLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVER-YGADALRFALIYLAT- 560 (862)
T ss_dssp -CEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHCC-
T ss_pred -EEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHH-cChHHHHHHHHhcCC-
Confidence 999999999987654433333 345544489999999997 999999999999999999999 999999999999755
Q ss_pred CCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCC--CcccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2393 390 KIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLN--MKWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKV 466 (576)
Q Consensus 390 ~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~--~~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~ 466 (576)
...|++||.+.+... ++++++++|++ |.. ..+.++..+ ..... | +|+++.++.+.+.+.++|++|+|+.|
T Consensus 561 ~~~D~~fs~~~l~~~--~~f~nkl~N~~-rf~---~~~~~~~~~~~~~~~~~D-~~il~~l~~~~~~v~~a~e~~~f~~A 633 (862)
T 1gax_A 561 GGQDIRLDLRWLEMA--RNFANKLYNAA-RFV---LLSREGFQAKEDTPTLAD-RFMRSRLSRGVEEITALYEALDLAQA 633 (862)
T ss_dssp TTCCEECCHHHHHHH--HHHHHHHHHHH-HHH---HHHSSSCCCCBCCCCHHH-HHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred CCCCCccCHHHHHHH--HHHHHHHHHHH-HHH---HhcccCCCCccccCCHHH-HHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 458899999988765 55899999996 322 223333211 12222 5 99999999999999999999999999
Q ss_pred HHHHHHHH--HHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 467 LYIVIEQT--NFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 467 ~~~l~~~~--~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
++.|++|+ .++|+|++.+|+|.+.+ .+++..++..+|..+++||+|||||+||+||+.|+.
T Consensus 634 ~~~l~~f~~~~~~n~Yie~~k~~l~~~-------~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~ 696 (862)
T 1gax_A 634 AREVYELVWSEFCDWYLEAAKPALKAG-------NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG 696 (862)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHTT-------BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHcchhhhcc-------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC
Confidence 99999998 68999999999986532 123456777899999999999999999999999973
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-80 Score=708.65 Aligned_cols=503 Identities=20% Similarity=0.243 Sum_probs=391.9
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCH-------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTP------- 81 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~------- 81 (576)
+++++|+|++|||||||.|||||+++++++|+++||+||+| ++|.|++||||||+||+.+|++.|.++
T Consensus 45 ~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G-----~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~ 119 (917)
T 1ffy_A 45 KGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQG-----FYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAE 119 (917)
T ss_dssp TTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTT-----CBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHH
T ss_pred cCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCC-----CCCCCcccCchhhHHHHHHHHHcCCCchhCCHHH
Confidence 46789999999999999999999999999999999999999 999999999999999999999999875
Q ss_pred -----HHHHHHHHHHHHHHHhhcCc--cccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccce
Q psy2393 82 -----KEFINNISSNRKKYLDGFYI--KFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYI 154 (576)
Q Consensus 82 -----~~~~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v 154 (576)
.++++++.+.++++|++||+ +||+++.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|+++||
T Consensus 120 f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~-~kGliYr~~~~v~wcp~~~T~Lae~eV 198 (917)
T 1ffy_A 120 FREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMA-DKGLIYKGKKPVYWSPSSESSLAEAEI 198 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEECCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHH-HcCCeEecccceeccCCCCcCcchhhh
Confidence 57889999999999999999 5789999999999999999999999 999999999999999999999999999
Q ss_pred ec---cC--------------------------------CC----CCCCC------------------------------
Q psy2393 155 KG---EC--------------------------------PI----CNAKD------------------------------ 165 (576)
Q Consensus 155 ~~---~~--------------------------------p~----c~~~~------------------------------ 165 (576)
++ .| |. |..++
T Consensus 199 ey~d~~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~ 278 (917)
T 1ffy_A 199 EYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWD 278 (917)
T ss_dssp EEEEEEEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCC
T ss_pred hcccccCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcc
Confidence 72 11 10 11111
Q ss_pred CCC--CccccCCCcC---------------------------------------------------------------CC
Q psy2393 166 QYG--DFCECCSSIY---------------------------------------------------------------TP 180 (576)
Q Consensus 166 ~~g--~~c~~cg~~~---------------------------------------------------------------~~ 180 (576)
.+. ..|+.||..+ ..
T Consensus 279 ~~~~~~~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~ 358 (917)
T 1ffy_A 279 KASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEE 358 (917)
T ss_dssp SSCCCCCCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTT
T ss_pred cceeeeeeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCc
Confidence 000 1122222210 00
Q ss_pred -----------------Ccc--------------CCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCCh
Q psy2393 181 -----------------TKL--------------INPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQP 228 (576)
Q Consensus 181 -----------------~~l--------------~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~ 228 (576)
+.| ..|+||||+++++++.++|||+++ +++++.++++ +++. ++|+
T Consensus 359 ~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~--~~lr~~~l~~-i~~~~~~P~ 435 (917)
T 1ffy_A 359 GGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASI--SKVRQDILDA-IENTNFKVN 435 (917)
T ss_dssp CSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECH--HHHHHHHHHH-HHTSEESSH
T ss_pred ccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeH--HHHHHHHHHH-HhcCcccCH
Confidence 001 148999999999999999999999 9999999999 7766 5688
Q ss_pred hHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC---CCCcE------------------EEEEeecccchhhhcchhhh
Q psy2393 229 EIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN---TLEKY------------------FYVWLDAPIGYLASLKNFFE 287 (576)
Q Consensus 229 ~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~---~~~~~------------------~~vw~d~~~~~~~~~~~~~~ 287 (576)
..++++.+|++ +++|||||||+ +||+|||. .++.+ +++|+++...++...+.-+.
T Consensus 436 ~~~~r~~~~l~---~~~DW~ISRqr-~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~ 511 (917)
T 1ffy_A 436 WGKTRIYNMVR---DRGEWVISRQR-VWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHP 511 (917)
T ss_dssp HHHHHHHHHHH---HCCCEECEESC-SSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCS
T ss_pred HHHHHHHHHHh---cCccceeeccC-CcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccc
Confidence 88999999999 78999999999 99999996 22443 36788776555442111112
Q ss_pred hCCCCCcccccccccccccCCC---------------cceEEEeeecCcc--hhHhHHHHHHHhcCCCCCcEEeeeccEE
Q psy2393 288 KGGPKKKYNELRNFDEFISSPN---------------TEQYHFIGKDIFY--FHILFWPAILKFSGRKLPNNIFVHGFMT 350 (576)
Q Consensus 288 ~~g~~~~~~~~~~~~~~w~~~~---------------~~~i~~~G~D~~~--fh~~~~~a~l~~~~~~~p~~~~~~g~v~ 350 (576)
.+|. ..|.++.+.-+.|.+++ ...++++|+||++ ||..++.++. ..|..+++.+++||||+
T Consensus 512 ~~g~-~~~~~~~D~lD~WfdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~-~~g~~Pfk~v~~hG~V~ 589 (917)
T 1ffy_A 512 GSPN-GTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVM 589 (917)
T ss_dssp SCTT-SCCEECCCEECHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEE
T ss_pred cCCc-ccccccCCCcCeecCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHHHHHH-hhCCCcccceeEeeeEE
Confidence 2221 12333222222221110 0128999999995 6677666654 34555558999999999
Q ss_pred e-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcC
Q psy2393 351 I-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFK 429 (576)
Q Consensus 351 ~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~ 429 (576)
+ +|+|||||+||+|+|.+++++ ||+|++|||+++. ++..|++||++.+... .+++++++|+++++...+.. ++
T Consensus 590 d~~G~KMSKSlGNvV~P~dvi~~-yGaDalR~~lls~--~~~~D~~fs~~~l~~~--~~~~~kl~n~~r~~l~nl~~-~~ 663 (917)
T 1ffy_A 590 DGEGKKMSKSLGNVIVPDQVVKQ-KGADIARLWVSST--DYLADVRISDEILKQT--SDDYRKIRNTLRFMLGNIND-FN 663 (917)
T ss_dssp CTTSCCCCSSSSCCCCHHHHHHH-TCHHHHHHHHHTS--CTTSCEECCHHHHHHH--HHHHHHHHHHHHHHHHTSTT-CC
T ss_pred cCCCcCcccccCCcCChHHHHHh-CCHHHHHHHHhcc--CCCCCcccCHHHHHHH--HHHHHHHHHHHHHHHhhhhc-cC
Confidence 8 999999999999999999999 9999999999984 5668999999987654 45688899987665433211 11
Q ss_pred ---CCCCC-cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHhhhhcCccccccCcccHHHHHHH
Q psy2393 430 ---GYLNM-KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTN--FINIFFDQNKPWKLAKNNIYHEKLHKI 502 (576)
Q Consensus 430 ---~~~~~-~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~--~~n~y~~~~k~~~~~~~~~~~~~~~~v 502 (576)
+.++. .+.. | +|+++.+..+.+.+.++|++|+|+.|++.|++|+. ++|.|++..|+|.+........ .+++
T Consensus 664 ~~~~~v~~~~l~~~D-~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~-r~~~ 741 (917)
T 1ffy_A 664 PDTDSIPESELLEVD-RYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHI-RRSM 741 (917)
T ss_dssp HHHHCCCGGGSCHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHH-HHHH
T ss_pred cccccCCccccCHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHH-HHHH
Confidence 11221 1222 5 99999999999999999999999999999999996 8999999999988754322222 2234
Q ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 503 SSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 503 ~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
..++..++..+++||+|||||+||+||+.|+.
T Consensus 742 ~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~ 773 (917)
T 1ffy_A 742 QTVLYQILVDMTKLLAPILVHTAEEVWSHTPH 773 (917)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHccc
Confidence 45666889999999999999999999999985
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-81 Score=711.62 Aligned_cols=491 Identities=20% Similarity=0.250 Sum_probs=392.3
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-CCC-------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-GMT------- 80 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-g~~------- 80 (576)
+++++|+|++|||||||.|||||+++++++|+++||+||+| ++|.+++|||+||+||+.+|++. |.+
T Consensus 35 ~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G-----~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~ 109 (821)
T 1ile_A 35 KGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRG-----YYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEA 109 (821)
T ss_dssp TTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTT-----CBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHH
T ss_pred CCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcC-----CcccccccccCCCchHHHHHHHHhcccccchHhh
Confidence 46789999999999999999999999999999999999999 99999999999999999999985 876
Q ss_pred ---------HHHHHHHHHHHHHHHHhhcC--ccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 81 ---------PKEFINNISSNRKKYLDGFY--IKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 81 ---------~~~~~~~~~~~~~~~l~~lg--i~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
+.++++++.+.++++|++|| ++||++++|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|
T Consensus 110 ~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~-~~Gliy~~~~~v~wcp~~~t~L 188 (821)
T 1ile_A 110 YGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLF-DRGLLYRDHKVVPYCPRCGTPL 188 (821)
T ss_dssp HCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHH-HTTCEEEECCEEEEETTTTEEC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHH-HcCCeeecCcceEecCCCCCcc
Confidence 34678889999999999999 78899999999999999999999999 9999999999999999999999
Q ss_pred cccce-ecc-----------------------------------------------------------------------
Q psy2393 150 PDRYI-KGE----------------------------------------------------------------------- 157 (576)
Q Consensus 150 ~~~~v-~~~----------------------------------------------------------------------- 157 (576)
+++|| +|.
T Consensus 189 ad~ev~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~ 268 (821)
T 1ile_A 189 SSHEVALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKL 268 (821)
T ss_dssp CHHHHHHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHH
T ss_pred cHhHhhcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHH
Confidence 99999 320
Q ss_pred ----------------------------------------------------CCCCCCCCC-----CC----CccccCCC
Q psy2393 158 ----------------------------------------------------CPICNAKDQ-----YG----DFCECCSS 176 (576)
Q Consensus 158 ----------------------------------------------------~p~c~~~~~-----~g----~~c~~cg~ 176 (576)
||.|+..|. +| ..|+.||+
T Consensus 269 ~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~ 348 (821)
T 1ile_A 269 LGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGK 348 (821)
T ss_dssp TCTTSCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSB
T ss_pred HhhCcEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCc
Confidence 111111100 00 12355676
Q ss_pred cCCC---------------Ccc--------------CCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCC-C
Q psy2393 177 IYTP---------------TKL--------------INPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKR-L 226 (576)
Q Consensus 177 ~~~~---------------~~l--------------~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~-~ 226 (576)
+... .+| ..|+|||||++++++.++|||+++ +++++.+.++ +++.. +
T Consensus 349 ~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~--~~~~~~~~~~-~~~~~~~ 425 (821)
T 1ile_A 349 LLVEPFKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKN--TLFKDELIRN-NQEIHWV 425 (821)
T ss_dssp BCSGGGTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECG--GGGHHHHHHH-HHHSEES
T ss_pred CcccCcCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhch--HHHHHHHHHH-hcCeEEE
Confidence 5541 111 249999999999999999999999 9999999999 77664 5
Q ss_pred ChhH-HHHHHHHHhhcCCCCCcccccCCCCCCeecCC----CCC------------------------------------
Q psy2393 227 QPEI-VNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN----TLE------------------------------------ 265 (576)
Q Consensus 227 ~~~~-~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~----~~~------------------------------------ 265 (576)
|+.. .+++.+|++ +++|||||||+ +||+|||. +++
T Consensus 426 P~~~~~~~~~~~l~---~l~DW~ISRqr-~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~ 501 (821)
T 1ile_A 426 PPHIKEGRYGEWLK---NLVDWALSRNR-YWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELA 501 (821)
T ss_dssp SGGGTTTTTHHHHH---TCCCEECCBCC-SSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEE
T ss_pred CchhhHhHHHHHHh---CCchheecccC-CCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccC
Confidence 6666 358999998 89999999999 99999993 111
Q ss_pred -----------cEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHh
Q psy2393 266 -----------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKF 334 (576)
Q Consensus 266 -----------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~ 334 (576)
.++++|||+...+++..+. ... ....|+.+||.+ +|++|+||++||.....++..+
T Consensus 502 ~~~g~~~~r~~dvld~WfdS~~~~~~~~~~-p~~--------~~~~f~~~~P~d----l~~~G~D~~r~w~~~~~~~~~~ 568 (821)
T 1ile_A 502 CACGGTMRRVPYVIDVWYDSGAMPFASLHY-PFE--------HEEVFRESFPAD----FIAEGIDQTRGWFNSLHQLGVM 568 (821)
T ss_dssp CTTSSEEEECSCBCCHHHHHHHHHHHTTTT-TTS--------CHHHHHHHSSBS----BEEEEGGGGGTHHHHHHHHHHH
T ss_pred CCCCCchhhcccccceecccccchHhhcCC-Ccc--------chHHHhhcCCcc----cccchhhhhccHHHHHHHHHHH
Confidence 3567788876655544321 100 013466678764 9999999998875443333333
Q ss_pred -cCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHH
Q psy2393 335 -SGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGK 412 (576)
Q Consensus 335 -~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~ 412 (576)
.|.++++.+++||||++ +|+|||||+||+|+|.+++++ ||+|++|||+++..+ ...|++||.+.+.... ++++++
T Consensus 569 ~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~-yGaDalR~~ll~~~~-~~~d~~fs~~~l~~~~-~~~~~k 645 (821)
T 1ile_A 569 LFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK-FGADALRWYIYVSAP-PEADRRFGPNLVRETV-RDYFLT 645 (821)
T ss_dssp HHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTT-TCHHHHHHHHHHHSC-SSSCEECCHHHHHHHH-HHTHHH
T ss_pred hcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHH-hCHHHHHHHHHhCCC-CCCCcEecHHHHHHHH-HHHHHH
Confidence 35556699999999998 999999999999999999999 999999999999754 4578999999876643 457999
Q ss_pred HHHHHHHHHHHHHHHcCCCCC------CcccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhhhh
Q psy2393 413 YINIASRSSSFIEKYFKGYLN------MKWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINIFFDQ 483 (576)
Q Consensus 413 ~~n~~~R~~~~~~~~~~~~~~------~~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y~~~ 483 (576)
++|+++|+..+.. .++..+ ..+.. | +++++.+..+.+.+.++|++|+|+.|++.|++|+ .++|.|++.
T Consensus 646 l~N~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d-~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~ 722 (821)
T 1ile_A 646 LWNVYSFFVTYAN--LDRPDLKNPPPPEKRPEMD-RWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRR 722 (821)
T ss_dssp HHHHHHHHHHHHH--HHCCCTTSCCCSTTSCHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHH
T ss_pred HHHHHHHHHHhhc--cccCCcccccccccCCHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987653321 112111 11222 5 8999999999999999999999999999999999 889999999
Q ss_pred cCc--cccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 484 NKP--WKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 484 ~k~--~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
+|+ |...++. .+. ++..++.++|+.+++||+|||||+||+||+.|+..
T Consensus 723 ~k~~~~~~~~~~-~r~---~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~ 772 (821)
T 1ile_A 723 NRRRFWKNEDAL-DRE---AAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRS 772 (821)
T ss_dssp HHHHHHTCTTTS-STT---HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTT
T ss_pred hhhhcccCCCcH-HHH---HHHHHHHHHHHHHHHHcCCccchHHHHHHHhcccc
Confidence 876 4322211 111 34456678899999999999999999999999853
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-74 Score=664.16 Aligned_cols=490 Identities=18% Similarity=0.214 Sum_probs=375.3
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-------------
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA------------- 77 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~------------- 77 (576)
+++|+|++|||||||.|||||+++++++|+++||+||+| ++|+|++||||||+||+..|++.
T Consensus 33 ~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G-----~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~ 107 (967)
T 1wz2_A 33 EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQG-----YNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRD 107 (967)
T ss_dssp GGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTT-----CCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCC-----CccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHH
Confidence 378999999999999999999999999999999999999 99999999999999999887652
Q ss_pred --C---------CCHHHHHHHHHHHHHHHHhhcCcccc--ccccCCC--hhhHHHHHHHHHHHHhcCCcEEecceeeeec
Q psy2393 78 --G---------MTPKEFINNISSNRKKYLDGFYIKFD--NWYSTDS--IENIDLVQKIYDTLYNKAKLIINKKINQFFD 142 (576)
Q Consensus 78 --g---------~~~~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~--~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~ 142 (576)
| .+|.++++++.+.++++|++||+++| +.+.|++ +.|.+.++++|.+|+ ++|+||++..+++||
T Consensus 108 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~-~kGliyr~~~~v~wc 186 (967)
T 1wz2_A 108 VYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLK-EKGYIVKGAHRVRWD 186 (967)
T ss_dssp TSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTT-TTTCEEECCCCCEEC
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHH-HCCCEEEeceEeccc
Confidence 3 36888999999999999999999555 8889999 999999999999999 999999999999999
Q ss_pred CCCCccccccceeccC------------------------------------------CCC--------C----------
Q psy2393 143 PIKNIFLPDRYIKGEC------------------------------------------PIC--------N---------- 162 (576)
Q Consensus 143 ~~~~~~l~~~~v~~~~------------------------------------------p~c--------~---------- 162 (576)
|.|+|+|+++||++.. |.| +
T Consensus 187 p~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a 266 (967)
T 1wz2_A 187 PVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVS 266 (967)
T ss_dssp TTTSCBCCSSSCSSCCCCCEECCEEEEEECCCSSSCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEEE
T ss_pred CCCCCCcchhhhccCCCceeceeEEEEEEecCCCCceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCcceeeehH
Confidence 9999999999875310 111 1
Q ss_pred ------------------------------------CC----------CCCCC---------------------------
Q psy2393 163 ------------------------------------AK----------DQYGD--------------------------- 169 (576)
Q Consensus 163 ------------------------------------~~----------~~~g~--------------------------- 169 (576)
.. ..+|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~ 346 (967)
T 1wz2_A 267 KEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEIL 346 (967)
T ss_dssp HHHHHHHHHSSCEEEEEEECCSSTTSSCEEECSSSSCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCC
T ss_pred HHHHHHHHhhccCcEEEEEEEchhhcCCEEECCCCCCceEEEecccccCCCCcccEEeecCCCHHHHHHHHhhccchhHH
Confidence 00 00000
Q ss_pred -------------------------------ccccC-------------------------CCcC----CC---------
Q psy2393 170 -------------------------------FCECC-------------------------SSIY----TP--------- 180 (576)
Q Consensus 170 -------------------------------~c~~c-------------------------g~~~----~~--------- 180 (576)
.|+.| |.++ ..
T Consensus 347 ~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~~g~~~G~~v~ea~~~ 426 (967)
T 1wz2_A 347 EKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEA 426 (967)
T ss_dssp CTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCCSSSSCSSBHHHHTTT
T ss_pred HHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEeccCcCCcCHHHHHHH
Confidence 01100 1110 00
Q ss_pred --------------CccC-CCcccCCCCccEEe-eecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCC
Q psy2393 181 --------------TKLI-NPYSILSGTKPIIK-SSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKDNK 243 (576)
Q Consensus 181 --------------~~l~-~p~~~~~~~~~~~~-~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 243 (576)
.++. .|+|||||++++.+ .++|||+++++..+++.+.++ +++. ++|+..++.+.+|++ +
T Consensus 427 i~~~L~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~-~~~~~~~P~~~~~~~~~~l~---~ 502 (967)
T 1wz2_A 427 IAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKA-LERMKILPETRRAQFEAIID---W 502 (967)
T ss_dssp THHHHHHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHH-HTTSCEESSTTHHHHHHHHH---S
T ss_pred HHHHHHhCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHh-hhccEeeCccccchHHHhhh---c
Confidence 0011 48999999999999 699999999433699999999 7765 568888999999998 8
Q ss_pred CCCcccccCCCCCCeecCCCCC--------cEEEEEeecccchhhhcc----------------hh-------------h
Q psy2393 244 FNDWDISRDAPYFGIKIPNTLE--------KYFYVWLDAPIGYLASLK----------------NF-------------F 286 (576)
Q Consensus 244 ~~dw~isR~~~~WG~~iP~~~~--------~~~~vw~d~~~~~~~~~~----------------~~-------------~ 286 (576)
++|||||||+ +||+|+|.++. .++|+|+++..+++.... .+ .
T Consensus 503 l~DW~ISRqr-~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~~~~g~~~~~l~~~~~d~~~~~~~~~g~~~~~~ 581 (967)
T 1wz2_A 503 LDKKACARKI-GLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELE 581 (967)
T ss_dssp CCEECCCBSS-SSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHTTTSCCCHHHHHHHH
T ss_pred ccCeeeccCC-CCCccCCcCcccccccCCCCceEeehhhhhhHHHHHHHhcCCChHHcCcccceeeccCccccCccccch
Confidence 9999999999 99999997543 345666654433332100 00 0
Q ss_pred hhCCCCCc-ccc-cccccccccCCCcceEEEeeecCcchhHhHHHHHHHhc-CC-CCCcEEeeeccEEeCCccccccCCC
Q psy2393 287 EKGGPKKK-YNE-LRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFS-GR-KLPNNIFVHGFMTINGKKMSKSNKI 362 (576)
Q Consensus 287 ~~~g~~~~-~~~-~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~-~~-~~p~~~~~~g~v~~~g~KMSKS~gn 362 (576)
...|.+.. ..+ ..+++.|||.+ +|++|+||++||+.++.++..++ +. +.|+.+++||||+++|+|||||+||
T Consensus 582 ~~sG~~~~~~~~~~~~~~~w~P~D----i~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GN 657 (967)
T 1wz2_A 582 KKTGIPAEIIHEMKEEFEYWYPLD----WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGN 657 (967)
T ss_dssp HHHTCCHHHHHHHHHHHHHHCSCS----EEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCC
T ss_pred hhcCCCHHHHhhhHHHHHhhCCCe----EEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccC
Confidence 01110000 000 02345556654 99999999999999986554443 33 4579999999999999999999999
Q ss_pred ccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc-CChH
Q psy2393 363 GISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLNMKWV-KDND 441 (576)
Q Consensus 363 ~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~-~d~~ 441 (576)
+|+|.+++++ ||+|++|||+++.++ ...|++|+.+.+... .+++++++|++.++.. . ....+.... .| +
T Consensus 658 vv~p~d~i~~-yGaDalR~~ll~~~~-~~~d~~fs~~~~~~~--~~~l~rl~n~~~~~~~----~-~~~~~~~~~~~D-~ 727 (967)
T 1wz2_A 658 VLNFIDAIEE-NGADVVRLYIMSLAE-HDSDFDWRRKEVGKL--RKQIERFYELISQFAE----Y-EVKGNVELKDID-R 727 (967)
T ss_dssp CCBHHHHHHT-TCHHHHHHHHHHHCC-TTCCEEECHHHHHHH--HHHHHHHHHHHHHHHS----S-CCCCCCCCCHHH-H
T ss_pred CCCHHHHHHH-hChHHHHHHHHhCCC-CCCCcccCHHHHHHH--HHHHHHHHHHHHHHhc----C-CCCCcccCCHHH-H
Confidence 9999999999 999999999987644 568899999876554 4567777777654421 1 100111222 25 9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhcccc
Q psy2393 442 TFLSKLRVVSSSIQKYYENRNFNKVLYIV-IEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPI 520 (576)
Q Consensus 442 ~l~~~l~~~~~~v~~a~~~~~~~~~~~~l-~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi 520 (576)
|+++.+..+.+.+.++|++|+|+.|+..+ +.+++.+|+|++.+++. . . . .+..++.++|+.+++||+||
T Consensus 728 ~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~~----~--~-~---~~~~~l~~~l~~l~~LLaP~ 797 (967)
T 1wz2_A 728 WMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGR----D--D-E---AKRYVLRTLADVWVRLMAPF 797 (967)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTC----C--C-H---HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccch----h--H-H---HHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999876 57778999999988742 1 1 1 33457778999999999999
Q ss_pred ccHHHHHHHHHcCCC
Q psy2393 521 LPNLAKSVETFLNIS 535 (576)
Q Consensus 521 ~P~~ae~i~~~L~~~ 535 (576)
|||+||+||+.||.+
T Consensus 798 ~P~~aEeiw~~L~~~ 812 (967)
T 1wz2_A 798 TPHICEELWEKLGGE 812 (967)
T ss_dssp SHHHHHHHHHHSSCC
T ss_pred cchHHHHHHHhcCCC
Confidence 999999999999853
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-74 Score=654.16 Aligned_cols=488 Identities=17% Similarity=0.212 Sum_probs=376.4
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-----------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA----------- 77 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~----------- 77 (576)
+++++|+|++|||||||+|||||+++++++|+++||+||+| ++|.+++|||+||+||+..|++.
T Consensus 31 ~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G-----~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~ 105 (810)
T 1wkb_A 31 PKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQG-----YNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIY 105 (810)
T ss_dssp CGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCC-----CccCcCCccCCCCChHHHHHHHhcccCchHHHHH
Confidence 34679999999999999999999999999999999999999 99999999999999999887642
Q ss_pred -------------CCCHHHHHHHHHHHHHHHHhhcCcccc--ccccCCC--hhhHHHHHHHHHHHHhcCCcEEecceeee
Q psy2393 78 -------------GMTPKEFINNISSNRKKYLDGFYIKFD--NWYSTDS--IENIDLVQKIYDTLYNKAKLIINKKINQF 140 (576)
Q Consensus 78 -------------g~~~~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~--~~~~~~v~~~~~~L~~~~g~iy~~~~~~~ 140 (576)
+.+|.++++++.+.++++|++|||++| +.+.|++ +.|.+.++++|.+|+ ++|+||++..+++
T Consensus 106 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~-~~Gliy~~~~~v~ 184 (810)
T 1wkb_A 106 RDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLK-EKGYIVKGAHRVR 184 (810)
T ss_dssp HHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHH-HCCCEEECCeeee
Confidence 247888999999999999999999776 7888999 999999999999999 9999999999999
Q ss_pred ecCCCCccccccceeccC------------------------------------------CCC--------C--------
Q psy2393 141 FDPIKNIFLPDRYIKGEC------------------------------------------PIC--------N-------- 162 (576)
Q Consensus 141 ~~~~~~~~l~~~~v~~~~------------------------------------------p~c--------~-------- 162 (576)
|||.|+|+|++++|++.+ |.| +
T Consensus 185 ~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i 264 (810)
T 1wkb_A 185 WDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWI 264 (810)
T ss_dssp EETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEE
T ss_pred ccCCcCCCccHHHHhcCCCCccceeEEEEEEccCCCCceEEEEEcCCchHhhhhhEEEECCCCcEEEEEecCCCcceeee
Confidence 999999999999885410 111 1
Q ss_pred --------------------------------------CC----------CCCC-------------------------C
Q psy2393 163 --------------------------------------AK----------DQYG-------------------------D 169 (576)
Q Consensus 163 --------------------------------------~~----------~~~g-------------------------~ 169 (576)
.. ..+| +
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~ 344 (810)
T 1wkb_A 265 VSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETE 344 (810)
T ss_dssp EEHHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSSSCCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSC
T ss_pred eHHHHHHHHHhhhcceEEEEEEEchhhcCCEEECCCCCCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHHhhccchh
Confidence 00 0000 1
Q ss_pred ccccCCCc---------C--------------------------C----------------------CC-----------
Q psy2393 170 FCECCSSI---------Y--------------------------T----------------------PT----------- 181 (576)
Q Consensus 170 ~c~~cg~~---------~--------------------------~----------------------~~----------- 181 (576)
+|..||-. + + ..
T Consensus 345 ~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~~g~~~G~~v~~a~ 424 (810)
T 1wkb_A 345 ILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVK 424 (810)
T ss_dssp CCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEECSGGGTTEEHHHHH
T ss_pred HHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEeccCcCCeEHHHhH
Confidence 12233311 0 0 00
Q ss_pred -----cc-------------CCCcccCCCCccEEe-eecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhhc
Q psy2393 182 -----KL-------------INPYSILSGTKPIIK-SSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEKD 241 (576)
Q Consensus 182 -----~l-------------~~p~~~~~~~~~~~~-~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~ 241 (576)
+| ..|+|||||++++.+ .++|||+++++..+++.+.++ +++. ++|+..++++.+|++
T Consensus 425 ~~i~~~L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~-~~~~~~~P~~~~~~~~~~l~-- 501 (810)
T 1wkb_A 425 EAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKA-LERMKILPETRRAQFEAIID-- 501 (810)
T ss_dssp HHHHHHHHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHH-HHTSEEESGGGHHHHHHHHH--
T ss_pred HHHHHHHHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhh-hcccEEECcchhchHHHHhh--
Confidence 00 038999999999998 799999999322599999999 7766 568888999999998
Q ss_pred CCCCCcccccCCCCCCeecCCCC--------CcEEEEEeecccchhhhcc----------------hh------------
Q psy2393 242 NKFNDWDISRDAPYFGIKIPNTL--------EKYFYVWLDAPIGYLASLK----------------NF------------ 285 (576)
Q Consensus 242 ~~~~dw~isR~~~~WG~~iP~~~--------~~~~~vw~d~~~~~~~~~~----------------~~------------ 285 (576)
+++|||||||+ +||+|+|.++ +.++|+|+++..+++.... .+
T Consensus 502 -~l~Dw~ISRq~-~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~g~~~~ 579 (810)
T 1wkb_A 502 -WLDKKACARKI-GLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKE 579 (810)
T ss_dssp -HCCCEECEESS-SBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHHHHSCCCHHHHHH
T ss_pred -cccCccccccC-CCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHhhcCCCHHHcCccceeeeeccccccCcccc
Confidence 89999999999 9999999532 4567778776555543100 00
Q ss_pred -hhhCCCCCc-ccc-cccccccccCCCcceEEEeeecCcchhHhHHHHHHHh-cCC-CCCcEEeeeccEEeCCccccccC
Q psy2393 286 -FEKGGPKKK-YNE-LRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKF-SGR-KLPNNIFVHGFMTINGKKMSKSN 360 (576)
Q Consensus 286 -~~~~g~~~~-~~~-~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~-~~~-~~p~~~~~~g~v~~~g~KMSKS~ 360 (576)
....|.+.. ..+ ..+++.|||.+ +|++|+||++||+.++.++..+ .+. +.|+++++||||+++|+|||||+
T Consensus 580 ~~~~sg~~~~~~~~~~~~~~~~~p~D----i~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~ 655 (810)
T 1wkb_A 580 LEKKTGIPAEIIHEMKEEFEYWYPLD----WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSK 655 (810)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHCSCS----EEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTT
T ss_pred chhhhCCCHHHHHhhHHHHHhhCCce----EEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcC
Confidence 001111000 000 02345556654 9999999999999998654444 232 46799999999999999999999
Q ss_pred CCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCC--Cccc-
Q psy2393 361 KIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLN--MKWV- 437 (576)
Q Consensus 361 gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~--~~~~- 437 (576)
||+|+|.+++++ ||+|++|||+++.++ ...|++||.+.+... .+++++++|++.++. ....+ ....
T Consensus 656 GNvv~p~dli~~-yGaDalR~~ll~~~~-~~~d~~fs~~~~~~~--~~~l~rl~n~~~~~~-------~~~~~~~~~~~~ 724 (810)
T 1wkb_A 656 GNVLNFIDAIEE-NGADVVRLYIMSLAE-HDSDFDWRRKEVGKL--RKQIERFYELISQFA-------EYEVKGNVELKD 724 (810)
T ss_dssp TCCCBHHHHHHH-HCHHHHHHHHHHHCC-TTCCEEECHHHHHHH--HHHHHHHHHHHHHHH-------TCCCCSCCCCCH
T ss_pred CCcCCHHHHHHH-cChHHHHHHHHhcCC-CCCCcccCHHHHHHH--HHHHHHHHHHHHHHH-------hccCcccccCCH
Confidence 999999999999 999999999986544 568899999876443 445666666654432 11111 1122
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHHh
Q psy2393 438 KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIV-IEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIY 516 (576)
Q Consensus 438 ~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l-~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~l 516 (576)
.| +++++.+..+.+.+.++|++|+|+.|+..+ +.+++.+|+|++.+++. + . . ++..++.++++.+++|
T Consensus 725 ~d-~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k~~----~--~--~--~~~~~l~~~l~~l~~l 793 (810)
T 1wkb_A 725 ID-RWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGR----D--D--E--AKRYVLRTLADVWVRL 793 (810)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTC----C--C--H--HHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcCc----c--h--h--HHHHHHHHHHHHHHHH
Confidence 25 899999999999999999999999999865 68889999999988741 1 1 1 1246777899999999
Q ss_pred ccccccHHHHHHHHHcC
Q psy2393 517 LKPILPNLAKSVETFLN 533 (576)
Q Consensus 517 l~Pi~P~~ae~i~~~L~ 533 (576)
|+|||||+||+||+.||
T Consensus 794 LaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 794 MAPFTPHICEELWEKLG 810 (810)
T ss_dssp HTTTSHHHHHHHHHHCC
T ss_pred HhhhhhHHHHHHHHhcC
Confidence 99999999999999987
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-71 Score=622.36 Aligned_cols=457 Identities=19% Similarity=0.272 Sum_probs=332.2
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
.++++|+|+++||||||+|||||+++++++|+++||+||+| ++|.+++|||+||+||+.+|.+.|.+|.++++++
T Consensus 50 ~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G-----~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~ 124 (880)
T 4arc_A 50 ESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLG-----KNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDN 124 (880)
T ss_dssp TTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTT-----CEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcC-----CceEEecCccccCcHHHHHHHHcCCCHHHHHHHH
Confidence 35679999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCC
Q psy2393 89 SSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQ 166 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~ 166 (576)
.+.|+++|++||+++| ++++|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|++.+
T Consensus 125 i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~-ekGliY~~~~~v~wcp~~~t~La~~e------------- 190 (880)
T 4arc_A 125 IAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELY-KKGLVYKKTSAVNWCPNDQTVLANEQ------------- 190 (880)
T ss_dssp HHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHH-HTTCEEEEEECC---------------------------
T ss_pred HHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHH-HCCCEEEeceeEeecCCcCCEecchh-------------
Confidence 9999999999999776 8999999999999999999999 99999999999999999999888654
Q ss_pred CCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC-CCChhHHHHHHHHHhh-----
Q psy2393 167 YGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK-RLQPEIVNKIKEWLEK----- 240 (576)
Q Consensus 167 ~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~----- 240 (576)
+++++|++||.+|+.+..+||||++ +++++.++++ ++.. .||+.++...++|+.+
T Consensus 191 ----------------v~~g~~~~~g~~ve~~~~~~~f~~i--~~y~~~Ll~~-l~~~~~wp~~v~~~~~~wig~s~g~~ 251 (880)
T 4arc_A 191 ----------------VIDGCCWRCDTKVERKEIPQWFIKI--TAYADELLND-LDKLDHWPDTVKTMQRNWIGRSEGVE 251 (880)
T ss_dssp --------------------------------CEEEEEECG--GGGHHHHHHH-GGGCTTSCHHHHHHHHHHHCEEEEEE
T ss_pred ----------------hhcCcCcCCCCccEEEEccceEEee--chhHHHHHHH-HhhcccccHHHHHHHHhhhccccceE
Confidence 4567788999999999999999999 9999999888 5443 5666666555555531
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 241 -------------------------------------------------------------------------------- 240 (576)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (576)
T Consensus 252 v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 331 (880)
T 4arc_A 252 ITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVH 331 (880)
T ss_dssp EEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC----------------CEEEEEEEEEC
T ss_pred EEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeeccccCcEEec
Confidence
Q ss_pred -------------------------------------------------c------------------------------
Q psy2393 241 -------------------------------------------------D------------------------------ 241 (576)
Q Consensus 241 -------------------------------------------------~------------------------------ 241 (576)
.
T Consensus 332 P~~~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~ 411 (880)
T 4arc_A 332 PLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLD 411 (880)
T ss_dssp TTTCCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCC
T ss_pred CCCCCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCcccCCCC
Confidence 1
Q ss_pred -----------------------CCCCCcccccCCCCCCeecCC----CCC-----------------------------
Q psy2393 242 -----------------------NKFNDWDISRDAPYFGIKIPN----TLE----------------------------- 265 (576)
Q Consensus 242 -----------------------~~~~dw~isR~~~~WG~~iP~----~~~----------------------------- 265 (576)
.+++|||||||| |||+|||. +++
T Consensus 412 ~~eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQR-yWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~ 490 (880)
T 4arc_A 412 HEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQR-YWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKAD 490 (880)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEESCCCEECEESC-SSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHS
T ss_pred HHHHHHHHHHHHHHcCCcceeEEEEcccceeeeee-ccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhC
Confidence 026799999999 99999994 111
Q ss_pred -----------------cEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchh---H
Q psy2393 266 -----------------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFH---I 325 (576)
Q Consensus 266 -----------------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh---~ 325 (576)
.++++|||+. +|.+.... ..... ..-+.+.++.|+|-+ ++++|.||+..| +
T Consensus 491 ~~w~~~~cpg~~~~retDtmDtw~dSs-wy~~r~~~-p~~~~---~~~~~~~~~~~~PvD----~yigG~EHailHllya 561 (880)
T 4arc_A 491 PEWAKTTVNGMPALRETDTFDTFMESS-WYYARYTC-PQYKE---GMLDSEAANYWLPVD----IYIGGIEHAIMHLLYF 561 (880)
T ss_dssp TTTTEEESSSSEEEECCCEECTTTGGG-THHHHTTS-TTCCS---SSCCHHHHHHHCSEE----EEECCGGGTTTHHHHH
T ss_pred ccceeeccCCCcceeCCCcCCCcccCc-HHHHhhcC-CCccc---cccChHHHhccCCce----EeecchhhHHHHHHHH
Confidence 1234455543 23322110 00000 000001222233433 899999997666 5
Q ss_pred hHHHHHHHhcCC---CCC-cEEeeeccEE-------e-CCc------------------------------------ccc
Q psy2393 326 LFWPAILKFSGR---KLP-NNIFVHGFMT-------I-NGK------------------------------------KMS 357 (576)
Q Consensus 326 ~~~~a~l~~~~~---~~p-~~~~~~g~v~-------~-~g~------------------------------------KMS 357 (576)
.+|..+|..+|. ..| +.+++||||+ . +|+ |||
T Consensus 562 Rf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMS 641 (880)
T 4arc_A 562 RFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMS 641 (880)
T ss_dssp HHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECC
T ss_pred HHHHHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCcccccccccccc
Confidence 677777777664 456 8999999996 3 566 999
Q ss_pred ccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCC-Ccc
Q psy2393 358 KSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYLN-MKW 436 (576)
Q Consensus 358 KS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~~-~~~ 436 (576)
||+||+|+|.+++++ ||+|++|||+++.++ ..+|++||.+.+... ..++++++|++.+... .......+ ..+
T Consensus 642 KSkGNvVdP~diIek-YGADalRl~ll~~~~-~~~dl~~s~~~ie~a--~rfl~rlwn~~~~~~~---~~~~~~~~~~~l 714 (880)
T 4arc_A 642 KSKNNGIDPQVMVER-YGADTVRLFMMFASP-ADMTLEWQESGVEGA--NRFLKRVWKLVYEHTA---KGDVAALNVDAL 714 (880)
T ss_dssp TTTTCCCCHHHHHHH-HCHHHHHHHHHHSSC-TTSCEECCHHHHHHH--HHHHHHHHHHHHHHHH---TCCCCCCCSTTC
T ss_pred CcCCCCCCHHHHHHH-cCchHHHHHHHhcCC-CCCCcccCHHHHHHH--HHHHHHHHHHHHHHHh---cccccccccccC
Confidence 999999999999999 999999999999754 458899999987655 3467777777644321 10000111 122
Q ss_pred cCChHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHhhhhcCccccccCcccHHHHHHHHHHHHHHHHHHHH
Q psy2393 437 VKDNDTFLSKLRVVSSSIQKYYE-NRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTI 515 (576)
Q Consensus 437 ~~d~~~l~~~l~~~~~~v~~a~~-~~~~~~~~~~l~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ 515 (576)
...++|+++.++++.+.+.++|+ +|+|+.|++.|++|++.+++|. .+ .. .. ..++.+++..+++
T Consensus 715 ~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~---------~~--~~-~~---~~~l~~~l~~ll~ 779 (880)
T 4arc_A 715 TENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP---------TD--GE-QD---RALMQEALLAVVR 779 (880)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSC---------CS--SH-HH---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhh---------cc--ch-HH---HHHHHHHHHHHHH
Confidence 22239999999999999999998 8999999999999998777652 11 11 12 2456678999999
Q ss_pred hccccccHHHHHHHHHcCCC
Q psy2393 516 YLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 516 ll~Pi~P~~ae~i~~~L~~~ 535 (576)
||+||+||+|||||+.||.+
T Consensus 780 LLaPf~PhiaEElW~~Lg~~ 799 (880)
T 4arc_A 780 MLNPFTPHICFTLWQELKGE 799 (880)
T ss_dssp HHTTTSHHHHHHHHHHTTCS
T ss_pred HHhhccHHHHHHHHHHcCCC
Confidence 99999999999999999875
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-69 Score=614.96 Aligned_cols=458 Identities=19% Similarity=0.249 Sum_probs=350.0
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
+++++++|+++||||||.|||||+|+++++|+++||+||+| ++|.+++|||+||+||+.+|++.|.+|.++++++
T Consensus 30 ~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G-----~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~ 104 (878)
T 2v0c_A 30 GGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQG-----YEVLHPMGWDAFGLPAENAALKFGVHPKDWTYAN 104 (878)
T ss_dssp C---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcC-----CceEeecccCcccHHHHHHHHHcCCCHHHHHHHH
Confidence 35678999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCC
Q psy2393 89 SSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQ 166 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~ 166 (576)
.+.|+++|++||+++| ++++|+++.|.+.++++|.+|+ ++|++|++..+++|||.|+|+|++++|+
T Consensus 105 ~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~-~kGliY~~~~~v~w~p~~~t~La~~ev~----------- 172 (878)
T 2v0c_A 105 IRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMW-EKGLAYRAKGLVNWCPKCQTVLANEQVV----------- 172 (878)
T ss_dssp HHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEEECGGGEE-----------
T ss_pred HHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHH-HCCCEEEcceeEEEeCCCCCCcCHHHHh-----------
Confidence 9999999999999776 8999999999999999999999 9999999999999999999999988774
Q ss_pred CCCccccCCCcCCCCccCCCcccC-CCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHh------
Q psy2393 167 YGDFCECCSSIYTPTKLINPYSIL-SGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLE------ 239 (576)
Q Consensus 167 ~g~~c~~cg~~~~~~~l~~p~~~~-~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~------ 239 (576)
++.|++ ||++++.+..+||||++ +++++.|.++ ++...||+.+++...+|+.
T Consensus 173 ------------------~g~~~~~~~~~~~~~~~~~~f~~l--~~~~~~L~~~-l~~~~~p~~~~~~~~~wi~~s~g~~ 231 (878)
T 2v0c_A 173 ------------------EGRCWRHEDTPVEKRELEQWYLRI--TAYAERLLKD-LEGLNWPEKVKAMQRAWIGRSEGAE 231 (878)
T ss_dssp ------------------TTEESSCTTCBCEEEEEEEEEECG--GGGHHHHHHT-TTTCBSCHHHHHHHHHHHCEEEEEE
T ss_pred ------------------cCCCcccCCCceEEEecceeeEec--chhHHHHHHH-hhhcCCCHHHHHHHHHHhccccCce
Confidence 345667 88899999999999999 9999888877 5443344444433333331
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 240 -------------------------------------------------------------------------------- 239 (576)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (576)
T Consensus 232 v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~ 311 (878)
T 2v0c_A 232 ILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYA 311 (878)
T ss_dssp EEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEEEEEEE
T ss_pred EEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEecCcEE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy2393 240 -------------------------------------------------------------------------------- 239 (576)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (576)
T Consensus 312 ~~P~~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~G 391 (878)
T 2v0c_A 312 LNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDG 391 (878)
T ss_dssp ECTTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTT
T ss_pred ECCCCCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEecCCCCCC
Confidence
Q ss_pred ---------------hc--------CCCCCcccccCCCCCCeecCCC---CCcEEE-------EEeecccch--------
Q psy2393 240 ---------------KD--------NKFNDWDISRDAPYFGIKIPNT---LEKYFY-------VWLDAPIGY-------- 278 (576)
Q Consensus 240 ---------------~~--------~~~~dw~isR~~~~WG~~iP~~---~~~~~~-------vw~d~~~~~-------- 278 (576)
+. .+++|||||||| +||+|||.. .+..+. +++.....+
T Consensus 392 l~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR-~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~ 470 (878)
T 2v0c_A 392 TESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQR-YWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGK 470 (878)
T ss_dssp CBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESC-SSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSS
T ss_pred cCHHHHHHHHHHHHHHCCCCCCceEEecccchhhccc-ccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCC
Confidence 00 046799999999 999999961 111111 111100001
Q ss_pred --hhhcchh----hhhCCCCCccccc-----------------------------ccccccccCCCcceEEEeeecCcch
Q psy2393 279 --LASLKNF----FEKGGPKKKYNEL-----------------------------RNFDEFISSPNTEQYHFIGKDIFYF 323 (576)
Q Consensus 279 --~~~~~~~----~~~~g~~~~~~~~-----------------------------~~~~~~w~~~~~~~i~~~G~D~~~f 323 (576)
+.....+ |..+|. .+.++ ++++.|||.+ ++++|.||...
T Consensus 471 ~pl~~~~~~~~~~cp~cg~--~~~retDtmDtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~D----~yi~G~d~~il 544 (878)
T 2v0c_A 471 SPLEAHPEFYETTCPKCGG--PAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVD----QYIGGVEHAVL 544 (878)
T ss_dssp CGGGGCHHHHEEECTTTCS--EEEECCCEECHHHHHTSHHHHTTSTTCSSSSCCHHHHHHHCSBS----EEECCGGGTTT
T ss_pred ChhhhhHhhcCCcCCCCCC--cceeccccccccccccchhhhccCccccccccCHHHHccCCCCe----EEEechHHHHH
Confidence 0000001 111221 11111 1222233443 89999999644
Q ss_pred h---HhHHHHHHHhcCC---CCC-cEEeeeccEEe---------------------------------------------
Q psy2393 324 H---ILFWPAILKFSGR---KLP-NNIFVHGFMTI--------------------------------------------- 351 (576)
Q Consensus 324 h---~~~~~a~l~~~~~---~~p-~~~~~~g~v~~--------------------------------------------- 351 (576)
| +.+|..+|..+|+ +.| +.+++||||+.
T Consensus 545 hl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (878)
T 2v0c_A 545 HLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRP 624 (878)
T ss_dssp HHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhhcccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeec
Confidence 4 5567777776663 455 89999999987
Q ss_pred --CC-------ccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHH
Q psy2393 352 --NG-------KKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSS 422 (576)
Q Consensus 352 --~g-------~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~ 422 (576)
+| +|||||+||+|+|.+++++ ||+|++|||+++.++. ..|++||.+.+... .+++++++|++.....
T Consensus 625 ~~~G~~~~~~~~KMSKSkGNvVdP~diI~~-yGADalRl~ll~~~~~-~~D~~fs~~~v~~~--~~~l~Rl~n~~~~~~~ 700 (878)
T 2v0c_A 625 HEDGTLHLWKPAVMSKSKGNGVMVGPFVKE-QGADIARITILFAAPP-ENEMVWTEEGVQGA--WRFLNRIYRRVAEDRE 700 (878)
T ss_dssp CTTSSEEEEEEEECSGGGTCCCBHHHHHHH-SCHHHHHHHHHHHSCT-TSCEEECHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred cCCCCchhhhHHHhhccCCCcccHHHHHHH-cCccHHHHHHhccCCC-CCCceeCHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 88 8999999999999999999 9999999999996554 48899999987554 4467777776543322
Q ss_pred HHHHHcCCCCCC-cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCccccccCcccHHHHH
Q psy2393 423 FIEKYFKGYLNM-KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKNNIYHEKLH 500 (576)
Q Consensus 423 ~~~~~~~~~~~~-~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~~~~~~~~~~~~~~ 500 (576)
-+.. ....++. .+.. | +|+++.+..+.+.+.++|++|+|+.|++.|++|++.+|+|.+.. . . +
T Consensus 701 ~~~~-~~~~~~~~~l~~~D-~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k~~~~~-------~--~----~ 765 (878)
T 2v0c_A 701 ALLE-TSGVFQAEALEGKD-RELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDR-------P--V----T 765 (878)
T ss_dssp HHHT-CCCCCCGGGCCHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC-------C--S----C
T ss_pred cccc-cccccCcccCCHHH-HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhhcccc-------h--h----H
Confidence 1100 0011111 2222 5 99999999999999999999999999999999999899886431 1 0 1
Q ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHcC
Q psy2393 501 KISSRLLEAFRILTIYLKPILPNLAKSVETFLN 533 (576)
Q Consensus 501 ~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~ 533 (576)
.++.++|+.+++||+|||||+||+||+.||
T Consensus 766 ---~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg 795 (878)
T 2v0c_A 766 ---PVYRTAIRYYLQMLFPFAPHLAEELWHWFW 795 (878)
T ss_dssp ---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHHcccchHHHHHHHHHcC
Confidence 345678999999999999999999999998
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=427.49 Aligned_cols=345 Identities=13% Similarity=0.135 Sum_probs=256.8
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
++++| .|||+|++||||+|++|++|+++||++++| ++|.++.|+||+|++|+.+|++.|.+++++++++.+.|
T Consensus 24 ~~yv~--gPt~y~~~HiGHar~~v~~D~l~R~lr~~G-----~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f 96 (461)
T 1li5_A 24 GMYVC--GITVYDLCHIGHGRTFVAFDVVARYLRFLG-----YKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEM 96 (461)
T ss_dssp EEEEC--CCBSSSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred eEEEc--CCcCCCCCcccccHHHHHHHHHHHHHHHcC-----CCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45555 588889999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhcCccc-cccccCCChhhHHHHHHHHHHHHhcCCcEEec-ceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 93 KKYLDGFYIKF-DNWYSTDSIENIDLVQKIYDTLYNKAKLIINK-KINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 93 ~~~l~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~-~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
++++++|||.+ |.+++++ +|...+++++++|. ++|++|+. ++.+|||+.+. .++
T Consensus 97 ~~~~~~LgI~~~d~~~r~t--~~~~~~~~~i~~L~-~~G~aY~~~~g~v~f~~~~~---------------------~~y 152 (461)
T 1li5_A 97 HKDFDALNILRPDMEPRAT--HHIAEIIELTEQLI-AKGHAYVADNGDVMFDVPTD---------------------PTY 152 (461)
T ss_dssp HHHHHHTTCCCCSBCCBGG--GCHHHHHHHHHHHH-HTTSEEECTTSCEEECGGGC---------------------TTT
T ss_pred HHHHHHcCCCCCccccccc--chHHHHHHHHHHHH-HCCCEEEecCCCEEEecccc---------------------ccc
Confidence 99999999997 7888877 48999999999999 99999999 89999987652 112
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~is 250 (576)
+..||+.+ +++. +|+.+.... .++. |... .-|.. ..+-.++
T Consensus 153 g~lsg~~~--~~l~------~g~rv~~~~---------------------~k~~--p~Df----~lwk~----~~~g~~~ 193 (461)
T 1li5_A 153 GVLSRQDL--DQLQ------AGARVDVVD---------------------DKRN--PMDF----VLWKM----SKEGEPS 193 (461)
T ss_dssp TTTTTC---------------------------------------------CCS--TTCE----EEEEE----CCTTSCC
T ss_pred ccccCCCH--HHhh------cCCcccchh---------------------cccC--ccce----EEEcc----CCCCCCc
Confidence 23344421 1221 121111100 0000 0000 00000 0011234
Q ss_pred cCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHH
Q psy2393 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPA 330 (576)
Q Consensus 251 R~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a 330 (576)
+.. .||++.|+ |+... +.. ...+|.. ...+|++|+|++|||+.+|+|
T Consensus 194 w~s-~WG~g~Pg--------Whiec----sam------------------~~~~lg~--~~dih~gG~Dl~fpH~~~~~a 240 (461)
T 1li5_A 194 WPS-PWGAGRPG--------WHIEC----SAM------------------NCKQLGN--HFDIHGGGSDLMFPHHENEIA 240 (461)
T ss_dssp BCC-TTCSEEEC--------SSHHH----HHH------------------HHHHHCS--SEEEEECBGGGTTTHHHHHHH
T ss_pred ccC-CCCCcCCC--------ccchh----HHH------------------HHHHhCC--CceEEeccCccCchHHHHHHH
Confidence 455 79999885 65421 100 0112311 123999999999999999999
Q ss_pred HHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHH
Q psy2393 331 ILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDL 409 (576)
Q Consensus 331 ~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~ 409 (576)
+++++ |.+.|+.++|||||+++|+|||||+||+|+|+|++++ ||+|++|||+++. +++.+++||++.+.+..+ .
T Consensus 241 q~~a~~g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~-~g~dalR~~ll~~--~~~~~~~fs~~~l~~~~~--~ 315 (461)
T 1li5_A 241 QSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKY-YDAETVRYFLMSG--HYRSQLNYSEENLKQARA--A 315 (461)
T ss_dssp HHHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTT-SCHHHHHHHHHSS--CTTSCEEECHHHHHHHHH--H
T ss_pred HHHHhcCCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhh-CCHHHHHHHHHcC--CcCCCCCCCHHHHHHHHH--H
Confidence 98886 7777788999999999999999999999999999999 9999999999985 677999999998876532 2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 410 IGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 410 ~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
+.+++|++.++ ++.++ + | .+..+.+.+.++| ++|+++.|+.+|+++++.+|+|++.
T Consensus 316 l~rl~n~~~~~--------~~~~~---~-d------~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~ 372 (461)
T 1li5_A 316 LERLYTALRGT--------DKTVA---P-A------GGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE 372 (461)
T ss_dssp HHHHHHHHTTC--------CTTSC---C-C------SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------hcCCC---H-H------HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhc
Confidence 44555554322 11111 1 1 2556778899999 8999999999999999999999976
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-48 Score=409.62 Aligned_cols=343 Identities=14% Similarity=0.113 Sum_probs=238.1
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
++.++.++|||||++||||+|+++++|+++||++++| ++|.+++|+||||++|+.+|++.|.+++++++++.+.|
T Consensus 39 ~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G-----~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~ 113 (414)
T 3c8z_A 39 TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAG-----HTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLF 113 (414)
T ss_dssp EEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcC-----CCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3344444689999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhcCcc-ccccccCCChhhHHHHHHHHHHHHhcCCcEEecc----eeeeecCCCCccccccceeccCCCCCCCCCC
Q psy2393 93 KKYLDGFYIK-FDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKK----INQFFDPIKNIFLPDRYIKGECPICNAKDQY 167 (576)
Q Consensus 93 ~~~l~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~----~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~ 167 (576)
+++|++|||. +|.+++|++ |...++++|.+|. ++|++|+++ +.+||+... +
T Consensus 114 ~~~~~~Lgi~~~d~~~r~t~--~~~~~~~~~~~L~-~kG~~Y~~~~~~e~~~~f~~~~---------------------~ 169 (414)
T 3c8z_A 114 REDMAALRVLPPHDYVAATD--AIAEVVEMVEKLL-ASGAAYIVEDAEYPDVYFRADA---------------------T 169 (414)
T ss_dssp HHHHHHTTCCCCSEEEEGGG--CHHHHHHHHHHHH-HHTSEEECSCSSCCCEEECTTS---------------------S
T ss_pred HHHHHHcCCCCCcceecccc--hHHHHHHHHHHHH-HCCCEEeccCCcCCCEEEEchh---------------------h
Confidence 9999999998 999998874 8899999999999 999999987 666664332 0
Q ss_pred CCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcC-CCCChhHHHHHHHHHhhcCCCCC
Q psy2393 168 GDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHD-KRLQPEIVNKIKEWLEKDNKFND 246 (576)
Q Consensus 168 g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~d 246 (576)
..||. .|+. + .+.+..++.+. ..... ..+ .+..|
T Consensus 170 ----~~~g~-------------l~~~------------~------~~~~~~~~~~~~~~~~~--------~~k--~~~~D 204 (414)
T 3c8z_A 170 ----AQFGY-------------ESGY------------D------RDTMLTLFAERGGDPDR--------PGK--SDQLD 204 (414)
T ss_dssp ----TTTTT-------------TTCC------------C------HHHHHHHHHHTTCCTTC--------TTC--SSTTC
T ss_pred ----hhhHh-------------hcCC------------C------HHHHHHHHhhccccccc--------ccc--CCcch
Confidence 01111 0000 0 11122110000 00000 000 11122
Q ss_pred cccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHh
Q psy2393 247 WDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 247 w~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~ 326 (576)
+. .||++.|+.+. | |++.+.- .. .|.-++. ....++|. ....+|++|+||++||+.
T Consensus 205 ~~------lWk~~~pg~~~-----W-da~~g~g-~p-gWhiec~--------a~~~~~~g--~~~di~~~G~D~~~~H~~ 260 (414)
T 3c8z_A 205 AL------LWRAERPGEPS-----W-PSPFGRG-RP-GWHVECS--------AIALTRIG--TGLDIQGGGSDLIFPHHE 260 (414)
T ss_dssp EE------EEEECCTTSCC-----B-CCTTCSE-EE-CHHHHHH--------HHHHHHTC--SCEEEEEEEGGGTTTHHH
T ss_pred hh------hcCCCCCCCCC-----C-CCCCCCC-CC-CccchhH--------HHHHHhcC--CCceEEEeccccccHHHH
Confidence 21 48888886543 6 6654321 00 0100000 01122341 123499999999999999
Q ss_pred HHHHHHHhc-CCCCCcEEeee-ccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhh
Q psy2393 327 FWPAILKFS-GRKLPNNIFVH-GFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISC 404 (576)
Q Consensus 327 ~~~a~l~~~-~~~~p~~~~~~-g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~ 404 (576)
+|+++++++ |.+++.++++| |||+++|+|||||+||+|+|++++++|||+|++|||+++. ++..|++||++.+.+.
T Consensus 261 ~~~a~~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~--~~~~d~~fs~~~l~~~ 338 (414)
T 3c8z_A 261 YSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSG--HYREDRFWSNEVLDEA 338 (414)
T ss_dssp HHHHHHHHHHCCSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTS--CTTSCBCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEec--CcCCCCCcCHHHHHHH
Confidence 999999887 76555555555 9999999999999999999999999889999999999984 5678999999988776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHH
Q psy2393 405 VNSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINI 479 (576)
Q Consensus 405 ~~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~ 479 (576)
.+ .+++++|+++|+ ++ + + +..+.+.+.++| ++|++++|+..|++|++.+|+
T Consensus 339 ~~--~l~~l~n~~~~~--------~~--~-----~-------~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~ 390 (414)
T 3c8z_A 339 NA--RLARWRSATALP--------EA--P-----D-------ATDVIARVRQYLADDLDTPKALAALDGWCTDALS 390 (414)
T ss_dssp HH--HHHHHHHHHTSS--------CB--S-----C-------CHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhc--------cc--h-----h-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 43 377888876543 11 1 1 134567788999 799999999999999999988
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=409.68 Aligned_cols=356 Identities=17% Similarity=0.170 Sum_probs=228.4
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCC----------CcccHHHHHHHHHcCCCHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICAD----------DAHGAAIMIAAEKAGMTPK 82 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~----------D~~G~~i~~~a~~~g~~~~ 82 (576)
++||| +|||+|.+||||+|++|++|+++||++++| |+|.|++|+ |+||+||+.+|++.|.+|.
T Consensus 44 ~~Yvc--gPTvYg~~HIGHar~~v~~Dvl~R~lr~~G-----y~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~ 116 (501)
T 3sp1_A 44 KVYAC--GPTVYNYAHIGNFRTYIFGDLLIKTLRFLG-----YKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVY 116 (501)
T ss_dssp EEEEC--CCBCSSCCCHHHHHHHHHHHHHHHHHHHHT-----CCEEEEEEEBCSCCC-------------------CCHH
T ss_pred eEEeC--CCcCCCCcchhhhHHHHHHHHHHHHHHHcC-----CceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHH
Confidence 45555 588889999999999999999999999999 999999766 4559999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCC
Q psy2393 83 EFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICN 162 (576)
Q Consensus 83 ~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~ 162 (576)
+++++|.+.|.++|++|||.+|.++.+ +++|...++++|.+|. ++|++|++++.+|||+.+-.
T Consensus 117 e~a~~~~~~f~~d~~~Lgi~~d~~~~~-~t~hi~~v~~~i~~L~-~kG~aY~~~g~Vyf~v~~f~--------------- 179 (501)
T 3sp1_A 117 EISEFFTEAFFNDCRKLNIVYPDKVLV-ASKHIPIMIEVVKILE-EKKITYFSNGNVYFDTSCFK--------------- 179 (501)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSEEEE-GGGCHHHHHHHHHHHH-HTTCEEEETTEEEECGGGCT---------------
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcccC-cchHHHHHHHHHHHHH-HCCCEEEeCCcEEecCCccC---------------
Confidence 999999999999999999999887754 5789999999999999 99999999999999987631
Q ss_pred CCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeec--ceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhh
Q psy2393 163 AKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSK--HFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEK 240 (576)
Q Consensus 163 ~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~--~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 240 (576)
.||..+ |+.+. +++ .+|..++....+ .--|.+ | +. .|..
T Consensus 180 ---~yG~ls---~~~~~-~~~------~~g~r~~~~~~K~~p~Df~l-----------W--k~--~p~~----------- 220 (501)
T 3sp1_A 180 ---SYGEMA---GIDLI-DKD------MTLPRVDVDKFKRNKTDFVL-----------W--FT--NSKF----------- 220 (501)
T ss_dssp ---TTTTTT---C------------------------CCSSTTCEEE-----------E--EE--CCC------------
T ss_pred ---CccccC---CCChh-hhh------ccCCccCcccccCCchhhHh-----------c--CC--CCCC-----------
Confidence 244322 11110 011 122211111000 000001 1 00 0000
Q ss_pred cCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecC
Q psy2393 241 DNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDI 320 (576)
Q Consensus 241 ~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~ 320 (576)
..+..-| .. .||...|+ | ++.+.... .++|.+ +..||++|+|+
T Consensus 221 ~~~~~~W----~s-pwG~GrPG--------W------hiEcsam~----------------~~~lg~--~~DIH~gG~DL 263 (501)
T 3sp1_A 221 KDQEMKW----DS-PWGFGYPS--------W------HLECAAMN----------------LEYFKD--ALDIHLGGVDH 263 (501)
T ss_dssp ----CCB----CC-TTCSEEEC--------H------HHHHHHHH----------------HHHTTT--CCCEEEEEGGG
T ss_pred CCCCcee----cC-CCCCCCCC--------c------hHHHHHHH----------------HHHcCC--CceEEeecccc
Confidence 0011123 33 57776664 3 33221111 123321 01299999999
Q ss_pred cchhHhHHHHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchh
Q psy2393 321 FYFHILFWPAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQ 399 (576)
Q Consensus 321 ~~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~ 399 (576)
+|||+.+|+|+.+++ |.+.++.++|+|||+++|+|||||+||+|+|++++++|||+|++|||+++. +++.+++||.+
T Consensus 264 ifpHheneiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~--~yr~~l~fs~~ 341 (501)
T 3sp1_A 264 IGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTS--HYRNQLKFSLD 341 (501)
T ss_dssp TTTHHHHHHHHHHHHHTSCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTS--CTTSCEECCHH
T ss_pred ccchHHHHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhc--cCCCCCccCHH
Confidence 999999999999886 444446777779999999999999999999999999889999999999987 78899999999
Q ss_pred hHhhhhhH--HHHHHHHHHHHHHHHHHHHHc-CCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Q psy2393 400 SFISCVNS--DLIGKYINIASRSSSFIEKYF-KGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTN 475 (576)
Q Consensus 400 ~~~~~~~~--~~~~~~~n~~~R~~~~~~~~~-~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~ 475 (576)
.+.+..+. +++++++|++.|+........ .... ..+ ...+..+.+.+.+|| ++|+++.|+..|+++++
T Consensus 342 ~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~ 413 (501)
T 3sp1_A 342 NLQASKIARENLINKLSYFYESLDPVDLNTLNKDLK----NFG----FSVEKEYYDSFVEKISFDLNVAQGLALLWEIIK 413 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCTT----SCS----SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhccccccccc----chh----hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 88877554 458888888876543332210 0000 001 123455677888999 59999999999999997
Q ss_pred HHH
Q psy2393 476 FIN 478 (576)
Q Consensus 476 ~~n 478 (576)
..|
T Consensus 414 ~~~ 416 (501)
T 3sp1_A 414 SDN 416 (501)
T ss_dssp CSS
T ss_pred Hhc
Confidence 653
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-48 Score=403.69 Aligned_cols=346 Identities=18% Similarity=0.198 Sum_probs=253.9
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
..++.++.++|||+|++||||+|++|++|+++||++++| |+|.|++|+||||+||+.+|++.|.++.++++++.+
T Consensus 23 ~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~G-----y~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~ 97 (462)
T 3tqo_A 23 SGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRG-----YEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQ 97 (462)
T ss_dssp TTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcC-----CceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 345556666799999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccccc-cCCChhhHHHHHHHHHHHHhcCCcEEec-ceeeeecCCCCccccccceeccCCCCCCCCCCC
Q psy2393 91 NRKKYLDGFYIKFDNWY-STDSIENIDLVQKIYDTLYNKAKLIINK-KINQFFDPIKNIFLPDRYIKGECPICNAKDQYG 168 (576)
Q Consensus 91 ~~~~~l~~lgi~~d~~~-~t~~~~~~~~v~~~~~~L~~~~g~iy~~-~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g 168 (576)
.|.+++++|||.+|.++ +++ +|...++++|.+|. ++|++|+. ++.+|||+.+.. .||
T Consensus 98 ~f~~d~~~LgI~~d~~~praT--e~i~~i~~~i~~L~-ekG~aY~~~~g~Vyfdv~~~~------------------~yg 156 (462)
T 3tqo_A 98 ILHEDEKALRVLSPDQEPRAT--QYVPEIIKLIQKLL-DNQYAYTGQNGDVFFDVRRFK------------------DYG 156 (462)
T ss_dssp HHHHHHHHHTCCCCSBCCBGG--GCHHHHHHHHHHHH-HHTSEEECTTSCEEECTTTCT------------------TTT
T ss_pred HHHHHHHHcCCCCCccccChh--hHHHHHHHHHHHHH-HCCCEEEecCCcEEecccccc------------------ccc
Confidence 99999999999987654 554 79999999999999 99999999 789999987642 133
Q ss_pred CccccCCCcCCCCccCCCcccCCCCccEEe--eecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCC
Q psy2393 169 DFCECCSSIYTPTKLINPYSILSGTKPIIK--SSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFND 246 (576)
Q Consensus 169 ~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~--~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d 246 (576)
..+. + +.+++. .|..+... ..+..-|.| | +.. ..+.+-
T Consensus 157 ~Ls~---~--~~~~~~------~g~r~~~~~~K~~p~DF~L-----------W--K~~----------------k~~ep~ 196 (462)
T 3tqo_A 157 KLSH---R--HLDELQ------AGARVEVSDSKRDPLDFVL-----------W--KKA----------------KPGEPK 196 (462)
T ss_dssp TTTT---C--SCC------------------CCSSTTCEEE-----------E--EEC----------------CTTSCC
T ss_pred cccC---C--ChHHhh------ccCccccccccCCccccce-----------e--eec----------------CCCCCc
Confidence 2221 0 011111 11111100 011111122 1 000 012222
Q ss_pred cccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHh
Q psy2393 247 WDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHIL 326 (576)
Q Consensus 247 w~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~ 326 (576)
| +. .||...|+ | ++.+.....+..| ..++ ||.+|.|++|||+.
T Consensus 197 W----~s-pwG~GrPG--------W------HiEcsam~~~~lG--------~~~d----------ih~gG~Dl~FpHhe 239 (462)
T 3tqo_A 197 W----DS-PWGEGRPG--------W------HIECSAMSSSILG--------QPFD----------IHGGGLDLKFPHHE 239 (462)
T ss_dssp B----CC-TTCSEEEC--------H------HHHHHHHHHHHHC--------SSEE----------EEEEEGGGTTTHHH
T ss_pred c----cC-CCCCCCCC--------C------ceehHHHHHHhcC--------CCeE----------EEccccccccHHHH
Confidence 3 33 57777665 2 3333222222223 2233 99999999999999
Q ss_pred HHHHHHHhc-CCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhh
Q psy2393 327 FWPAILKFS-GRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCV 405 (576)
Q Consensus 327 ~~~a~l~~~-~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~ 405 (576)
+..++..++ |.+.++.++|+|+|..+|+|||||+||+|+++|+++. ||+|++|||++++ +++.+++||.+.+.+.
T Consensus 240 neiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~-~g~dalR~~lls~--~yr~~l~fs~~~l~~a- 315 (462)
T 3tqo_A 240 NEIAQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKE-SDVEVLRYFLLSG--HYRNPLSYSKENLENG- 315 (462)
T ss_dssp HHHHHHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHH-SCHHHHHHHHHHS--CTTSCEEECHHHHHHH-
T ss_pred hHHHHHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhh-cChHHhhhhhccC--CCCCCcCcCHHHHHHH-
Confidence 999988775 5555578899999999999999999999999999999 9999999999987 7889999999987665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 406 NSDLIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 406 ~~~~~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
...+++++|++.++. .. . + + .+..+.+.+.++| ++|+++.|+..|+++++..|.+.+.
T Consensus 316 -~~~l~rl~~~~~~~~--------~~-~---~-~------~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~ 374 (462)
T 3tqo_A 316 -RLALERFYLALRGLP--------VV-N---H-E------KTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFRDN 374 (462)
T ss_dssp -HHHHHHHHHHHTTCC--------C-----------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHhh--------hc-c---c-h------hHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhhcc
Confidence 335667777653321 00 0 0 1 1234567788899 5999999999999999999987654
|
| >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-43 Score=384.34 Aligned_cols=392 Identities=14% Similarity=0.087 Sum_probs=273.6
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHH-----------------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM----------------- 71 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~----------------- 71 (576)
..++++.|..+.|||||++||||+|+.|++|+++|+++..| |+|.++.+++|+|.++.
T Consensus 116 ~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G-----~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~ 190 (629)
T 2zue_A 116 GKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLG-----YEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIM 190 (629)
T ss_dssp TTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcC-----CCceEEecccchhHHHHHHHHHHHHhCCcchhhh
Confidence 45678999999999999999999999999999999999999 99999999999877633
Q ss_pred ----------------------HHHHHcCCCH--------------------HHHHHHHHHHHHHHHhhcCccccccccC
Q psy2393 72 ----------------------IAAEKAGMTP--------------------KEFINNISSNRKKYLDGFYIKFDNWYST 109 (576)
Q Consensus 72 ----------------------~~a~~~g~~~--------------------~~~~~~~~~~~~~~l~~lgi~~d~~~~t 109 (576)
..+++.+.+| +++++.+.+.|++++++|||++|.|.++
T Consensus 191 ~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~e 270 (629)
T 2zue_A 191 NELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWE 270 (629)
T ss_dssp HHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEH
T ss_pred hhhcccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCc
Confidence 2233323333 7889999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhcCCcEEe---cceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCC
Q psy2393 110 DSIENIDLVQKIYDTLYNKAKLIIN---KKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINP 186 (576)
Q Consensus 110 ~~~~~~~~v~~~~~~L~~~~g~iy~---~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p 186 (576)
++..+...++.++++|. ++|++|. ++..+++|..+..+ .++.++
T Consensus 271 s~~~~~~~v~~vi~~L~-~kG~~y~~~~ge~~Ga~~v~~~~~-----------------------------g~~~~~--- 317 (629)
T 2zue_A 271 SDIVRRKLFEIALELLS-KNENFYIPSDGKYRGAFVMDLRKL-----------------------------FPDMKN--- 317 (629)
T ss_dssp HHHHHTTHHHHHHHHHH-TSTTEECCSSSTTTTCEEEECTTT-----------------------------CSSSSC---
T ss_pred CccccchhHHHHHHHHH-HCCCccccccCCcCCcEEEECccc-----------------------------CCcccc---
Confidence 87666899999999999 9999992 23333333333221 111010
Q ss_pred cccCCCCccEEeeecceeEecCchhhHHHHHH--hhhcCCCCChhHHHHHHHHHhhcCC-CCCcccccCCCCCCeecCC-
Q psy2393 187 YSILSGTKPIIKSSKHFFFKLSDKRCIDFLRK--WAIHDKRLQPEIVNKIKEWLEKDNK-FNDWDISRDAPYFGIKIPN- 262 (576)
Q Consensus 187 ~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~~~~~-~~dw~isR~~~~WG~~iP~- 262 (576)
+..++.+....+.... ..++-.+.+ . ++..+. .+ .. ...| +| . .||+++|+
T Consensus 318 -----~~~v~~ksdG~~~Y~~--~Diay~~~K~~l-l~~~fr-----------~~--~~~~~~~-~~--~-~wG~~~Pg~ 372 (629)
T 2zue_A 318 -----PILVLRRSDGTATYTG--KDIAYHLWKFGK-IDVDLL-----------YK--EWDSTTW-TT--A-PDGKSMPNK 372 (629)
T ss_dssp -----CEEEEECTTSCBCHHH--HHHHHHHHHTTC-SCCCCE-----------EE--ECSSSCE-EE--E-EEEEECTTS
T ss_pred -----CceEEEecCCccccch--hhHHHHHHHhhc-cccccc-----------CC--ccccccc-cc--C-CCCCCCCCc
Confidence 1122322222211111 112111111 1 111110 00 01 1223 22 2 69999995
Q ss_pred --CCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCC-
Q psy2393 263 --TLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKL- 339 (576)
Q Consensus 263 --~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~- 339 (576)
..++++|||.....+|+. . ..+.+.++|++.
T Consensus 373 ~~~~d~~IyV~g~~q~~~~~---------------------------------------------~-l~~~l~~lG~~~~ 406 (629)
T 2zue_A 373 FGNANIVINVIGAEQKHPQL---------------------------------------------A-IKYALQLLGFEDA 406 (629)
T ss_dssp SCCCSEEEEEEEGGGHHHHH---------------------------------------------H-HHHHHHHTTCHHH
T ss_pred cCCCCcEEEEEeCcHhhHHH---------------------------------------------H-HHHHHHHcCCCCC
Confidence 456666666443222211 1 224567778765
Q ss_pred Cc--EEeeeccEEeCCccccccCC--CccChhHHhhcC--------------------------CChhHHHHHHHhhCCC
Q psy2393 340 PN--NIFVHGFMTINGKKMSKSNK--IGISPLYYLKIG--------------------------MNPEWLRYYIASKLNN 389 (576)
Q Consensus 340 p~--~~~~~g~v~~~g~KMSKS~g--n~i~~~dll~~g--------------------------~g~d~lR~~l~~~~~~ 389 (576)
++ .++.||||+++|+|||||+| |+|+++||++++ +|+|++||++++. .
T Consensus 407 ~~~~~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~--~ 484 (629)
T 2zue_A 407 AANLYHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKY--S 484 (629)
T ss_dssp HHTEEEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSS--C
T ss_pred CCeEEEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhc--C
Confidence 32 67888999999999999999 999999999863 8999999999997 4
Q ss_pred CCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCC-------CC----cc-cCChHHHHHHHHHHHHHHHHH
Q psy2393 390 KIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYL-------NM----KW-VKDNDTFLSKLRVVSSSIQKY 457 (576)
Q Consensus 390 ~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~-------~~----~~-~~d~~~l~~~l~~~~~~v~~a 457 (576)
...+++||++.+.+.. ++..++++|+++|+++++++...... +. .+ .+.+..|+..+..+++.+.++
T Consensus 485 ~~~~~~Fd~d~~~~~~-~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a 563 (629)
T 2zue_A 485 PDKKIIFRWEDVLNFE-GESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQA 563 (629)
T ss_dssp TTSCEECCHHHHSCCS-SSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeecHHHHHHHh-cCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999998875 55788999999999999988633221 00 11 112278999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhhhcCccccccCcc-cHHHH---HHHHHHHHHHHHHHH
Q psy2393 458 YENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKNNI-YHEKL---HKISSRLLEAFRILT 514 (576)
Q Consensus 458 ~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~~~~~~~~-~~~~~---~~v~~~l~~~l~~l~ 514 (576)
+++++++.++.+|++++..+|+||+.++.+. +++. ...++ .++..++.+.|.+|+
T Consensus 564 ~~~~~p~~l~~yl~~La~~fn~fy~~~~vl~--~~~~~~~~RL~L~~a~~~vL~~gL~lLG 622 (629)
T 2zue_A 564 GKDVKPHLIAWFANELASLFNKFYMDHPVLK--AEEGVREARLLLVMAVEQVLKNALYLMG 622 (629)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHHHHHCCSTT--SCTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHhccccC--CChHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999996532 2221 22232 455555555555544
|
| >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=376.78 Aligned_cols=391 Identities=15% Similarity=0.081 Sum_probs=264.3
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHH-------------------
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIA------------------- 73 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~------------------- 73 (576)
++.|..+.|||||++||||+|++|++|+++|+++++| |+|.++.+++|.|.++...
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G-----~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~ 178 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAG-----REVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDH 178 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----EEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcC-----CceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcch
Confidence 7899999999999999999999999999999999999 9999999888887543211
Q ss_pred ---------------------------HHHcCCCHHHHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHH
Q psy2393 74 ---------------------------AEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLY 126 (576)
Q Consensus 74 ---------------------------a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~ 126 (576)
+.+.|.. +++++.+.+.|++++++|||++|.|.++++..+...+++++++|.
T Consensus 179 ~~g~~y~~~~~~~~~~~~~~~a~~~~~~~e~g~~-~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~ 257 (592)
T 1iq0_A 179 FAGRAYVRLHQDPEYERLQPAIEEVLHALERGEL-REEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLE 257 (592)
T ss_dssp HHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHhCCchHH-HHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHH
Confidence 1234443 889999999999999999999999999887666889999999999
Q ss_pred hcCCcEE-----ecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeec
Q psy2393 127 NKAKLII-----NKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSK 201 (576)
Q Consensus 127 ~~~g~iy-----~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~ 201 (576)
++|++| +.++..|+ .+.. +| ++.++ +..++.+...
T Consensus 258 -~kG~~y~~~~g~~~G~~~~--~~~~-------------------~g----------~~~~l--------~~~vi~ksdG 297 (592)
T 1iq0_A 258 -QSPHVFRPREGKYAGALVM--DASP-------------------VI----------PGLED--------PFFVLLRSNG 297 (592)
T ss_dssp -TSTTEECCSSSTTTTCEEE--ECTT-------------------TS----------CSCSC--------CEEEEECTTS
T ss_pred -HCCCcccCcccCcCCCEEE--echh-------------------cC----------CCCCC--------CceEEEecCC
Confidence 999999 44433333 2211 11 11111 1112222221
Q ss_pred ceeEecCchhhHHHHHHh-hhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCC-CCCcEEEEEeecccchh
Q psy2393 202 HFFFKLSDKRCIDFLRKW-AIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPN-TLEKYFYVWLDAPIGYL 279 (576)
Q Consensus 202 ~~f~~l~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~-~~~~~~~vw~d~~~~~~ 279 (576)
...... ..+.-.+.+. +++.-...+ |.....+.+.|- .||+++|. ..++++|||.+...+|+
T Consensus 298 ~~~Y~~--~D~a~~~~Kl~l~~~~~~~~--------~~~~p~~r~~w~------~~g~~~~~~~~~~~iyV~g~~h~~~~ 361 (592)
T 1iq0_A 298 TATYYA--KDIAFQFWKMGILEGLRFRP--------YENPYYPGLRTS------APEGEAYTPKAEETINVVDVRQSHPQ 361 (592)
T ss_dssp CBCHHH--HHHHHHHHHTTSSCCCEEEE--------CCCSSCTTCEEE------EEEEEECCCCCSEEEEEEESSSCCCH
T ss_pred ceEEec--chHHHHHHHhhhhhhhhhhh--------hhcCcchhhccc------ccCcccCCCCCCEEEEEEeccHHHHH
Confidence 111111 1111111110 000000000 000001112221 36778775 56777777765444333
Q ss_pred hhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCC-C-c-EEeeeccEEeCCccc
Q psy2393 280 ASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKL-P-N-NIFVHGFMTINGKKM 356 (576)
Q Consensus 280 ~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~-p-~-~~~~~g~v~~~g~KM 356 (576)
.. ..+++.++|++. + . .++.||||+++|+||
T Consensus 362 ~~----------------------------------------------~~~~~~alG~~~~~~~~~H~~~g~v~~~g~KM 395 (592)
T 1iq0_A 362 AL----------------------------------------------VRAALALAGYPALAEKAHHLAYETVLLEGRQM 395 (592)
T ss_dssp HH----------------------------------------------HHHHHHHTTCHHHHTTEEEEEECCEEETTBCS
T ss_pred HH----------------------------------------------HHHHHHHcCCCCCCCcEEEEEeeEEEcCCCcc
Confidence 22 123556677654 2 2 578889999999999
Q ss_pred cccCCCccChhHHhhcC------------------------CChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHH
Q psy2393 357 SKSNKIGISPLYYLKIG------------------------MNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGK 412 (576)
Q Consensus 357 SKS~gn~i~~~dll~~g------------------------~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~ 412 (576)
|||+||+|+++|+++.| +|+|++||++++. ....+++||++.+.+.. ++...+
T Consensus 396 SKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~--~~~~~~~Fd~d~~~~~~-~~~~~y 472 (592)
T 1iq0_A 396 SGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKT--EPKKQIDFRYQEALSFE-GDTGPY 472 (592)
T ss_dssp CC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHS--CTTSCEEECHHHHHCSS-SSSHHH
T ss_pred cCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhc--CCCCCCeecHHHHHHHh-ccchHH
Confidence 99999999999999975 9999999999998 45689999999998875 446789
Q ss_pred HHHHHHHHHHHHHHHcCCCCCC-cc-cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCc----
Q psy2393 413 YINIASRSSSFIEKYFKGYLNM-KW-VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKP---- 486 (576)
Q Consensus 413 ~~n~~~R~~~~~~~~~~~~~~~-~~-~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~---- 486 (576)
++++++|++++++++..+..+. .+ .+.+..|+..+..+++.+.+++++++++.++++|++++..+|+||+.++|
T Consensus 473 lqya~aR~~sil~k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~ 552 (592)
T 1iq0_A 473 VQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPA 552 (592)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEETTEES
T ss_pred HHHHHHHHHHHHHhhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 9999999999999875432221 11 11127789999999999999999999999999999999999999999954
Q ss_pred -cccccCcc-cHHH---HHHHHHHHHHHHHHHH
Q psy2393 487 -WKLAKNNI-YHEK---LHKISSRLLEAFRILT 514 (576)
Q Consensus 487 -~~~~~~~~-~~~~---~~~v~~~l~~~l~~l~ 514 (576)
|.+.+++. ...+ +.++..++.+.|.+|+
T Consensus 553 ~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLG 585 (592)
T 1iq0_A 553 TPVLTAPEGLRELRLSLVQSLQRTLATGLDLLG 585 (592)
T ss_dssp SCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55543322 1122 2344455555554444
|
| >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=331.79 Aligned_cols=335 Identities=18% Similarity=0.169 Sum_probs=249.4
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHH-------HH--cCCC
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA-------EK--AGMT 80 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a-------~~--~g~~ 80 (576)
.+++++|..++|||+|++||||+|+++++|+++|++++.| ++|.....+.|.|.++...+ .+ .|.+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G-----~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~ 102 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLG-----YKFNTEYYVNDAGNQIYLLGLSILLSVKESILHEN 102 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcC-----CceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCC
Confidence 5689999999999999999999999999999999999999 99999999999999984332 11 1211
Q ss_pred ---H----------------------------------HHHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHH
Q psy2393 81 ---P----------------------------------KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYD 123 (576)
Q Consensus 81 ---~----------------------------------~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~ 123 (576)
| +...+...+.+++++++|||.+|.+..+++ -|. .+.++++
T Consensus 103 ~~~p~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess-~~~-~~~~vv~ 180 (464)
T 3fnr_A 103 VEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERS-YYD-ALNATLE 180 (464)
T ss_dssp CCCCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGG-GST-THHHHHH
T ss_pred CCCchhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHH-HHH-HHHHHHH
Confidence 0 012334566899999999999999887654 344 8999999
Q ss_pred HHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecce
Q psy2393 124 TLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHF 203 (576)
Q Consensus 124 ~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~ 203 (576)
.|. ++|++|+.++..|+..
T Consensus 181 ~L~-~~g~~~e~dGa~~~~~------------------------------------------------------------ 199 (464)
T 3fnr_A 181 SLK-EHKGIYEQEGKIWLAS------------------------------------------------------------ 199 (464)
T ss_dssp HHH-HTTCEEEETTEEEECG------------------------------------------------------------
T ss_pred HHH-HCCCEEEeCCeEEEEe------------------------------------------------------------
Confidence 999 9999999988777621
Q ss_pred eEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhh-c
Q psy2393 204 FFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLAS-L 282 (576)
Q Consensus 204 f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~-~ 282 (576)
+++ +.-.|..|-|+. |.+. |++. +
T Consensus 200 ------~~~-----------------------------g~~~~~vl~ksD---G~~~-----------------Y~t~Di 224 (464)
T 3fnr_A 200 ------SQK-----------------------------GDEKDRVIIRED---GRGT-----------------YLAADI 224 (464)
T ss_dssp ------GGG-----------------------------TCSSCEEEECTT---SCBC-----------------HHHHHH
T ss_pred ------ccc-----------------------------CCCCceEEEeCC---Ccee-----------------hhhHHH
Confidence 110 000123333433 3321 3322 1
Q ss_pred chhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCCc-EEeeeccEEe--CCc--ccc
Q psy2393 283 KNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPN-NIFVHGFMTI--NGK--KMS 357 (576)
Q Consensus 283 ~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p~-~~~~~g~v~~--~g~--KMS 357 (576)
.+...+ ++. ...++|++.|.||......+ .+++.++|.++++ .+++||||++ +|+ |||
T Consensus 225 A~~~~r------------~~~----~~d~~Iyv~G~dq~~~f~~l-~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMS 287 (464)
T 3fnr_A 225 VYHKDK------------MSR----GYGKCINIWGADHHGYIPRM-KAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMS 287 (464)
T ss_dssp HHHHHH------------HTS----SCSEEEEEEEGGGGGGHHHH-HHHHHTTTCCGGGEEEEEECCEEEEETTEECCC-
T ss_pred HHHHHH------------HHc----CCCeEEEEecCcHHHHHHHH-HHHHHHcCCCccceEEEEeeeEEecCCCcccCCc
Confidence 111110 000 01356999999998433333 3567888987665 8899999976 886 999
Q ss_pred ccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCC--CC-
Q psy2393 358 KSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGKYINIASRSSSFIEKYFKGYL--NM- 434 (576)
Q Consensus 358 KS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~~~~~~n~~~R~~~~~~~~~~~~~--~~- 434 (576)
||+||+|+++|++++ +|+|++|||+++. ....+++||++.+.+..|.+.+.+++++++|+++++++...... +.
T Consensus 288 Kr~Gn~v~l~dll~~-~g~dalRy~~l~~--~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~ 364 (464)
T 3fnr_A 288 KRAGNFILMSDVVDE-IGSDALRYIFLSK--KCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKA 364 (464)
T ss_dssp --CCSSCBHHHHHHH-HCHHHHHHHTTSS--CTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTC
T ss_pred CcCCCCCCHHHHHhh-ccHHHHHHHHHhc--CCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 999999999999999 9999999999987 45688999999998876555555788999999999988643221 11
Q ss_pred ---cccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCcc
Q psy2393 435 ---KWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487 (576)
Q Consensus 435 ---~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~ 487 (576)
.+..++.+|+..+..+++.+.+++++++|++++++|++|+..+|+||+.++..
T Consensus 365 ~~~~L~~~e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~vl 420 (464)
T 3fnr_A 365 DLQSLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVV 420 (464)
T ss_dssp CCTTCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred ChhhCChHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 12211389999999999999999999999999999999999999999999853
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=314.89 Aligned_cols=336 Identities=13% Similarity=0.116 Sum_probs=244.4
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHH-----------------
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM----------------- 71 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~----------------- 71 (576)
..+++++|..+.|||||++||||+|+++++|+++|+++..| |+|.++.+++|+|.++.
T Consensus 140 ~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G-----~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~ 214 (607)
T 1f7u_A 140 VENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLG-----WEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVK 214 (607)
T ss_dssp SSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHH
T ss_pred cCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcC-----CCeeEEEeecCcchHHHHHHHHHHHhCchhhccC
Confidence 35678999999999999999999999999999999999999 99999999999877652
Q ss_pred -------------------------------HHHHH------cCCC-----HHHHHHHHHHHHHHHHhhcCccccccccC
Q psy2393 72 -------------------------------IAAEK------AGMT-----PKEFINNISSNRKKYLDGFYIKFDNWYST 109 (576)
Q Consensus 72 -------------------------------~~a~~------~g~~-----~~~~~~~~~~~~~~~l~~lgi~~d~~~~t 109 (576)
..|++ .|.+ .+++++.+.+.|++++++|||.+|.+.++
T Consensus 215 ~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~E 294 (607)
T 1f7u_A 215 DPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGE 294 (607)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEG
T ss_pred CChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCc
Confidence 22333 2443 46789999999999999999999998887
Q ss_pred CChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCccc
Q psy2393 110 DSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSI 189 (576)
Q Consensus 110 ~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~ 189 (576)
++ .+...+..+++.|. ++|++|+.++.+|++... +| .
T Consensus 295 S~-~~~~~~~~vi~~L~-~kG~~ye~dGa~~~~~~~---------------------~g-------~------------- 331 (607)
T 1f7u_A 295 SQ-VSKESMLKAIDLFK-EKGLTHEDKGAVLIDLTK---------------------FN-------K------------- 331 (607)
T ss_dssp GG-CCHHHHHHHHHHHH-HTTCEEEETTEEEEEGGG---------------------TC-------T-------------
T ss_pred ch-hhhhHHHHHHHHHH-hCCCEEEECCcEEEEecc---------------------cC-------C-------------
Confidence 64 23378899999999 999999988887773211 00 0
Q ss_pred CCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEE
Q psy2393 190 LSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFY 269 (576)
Q Consensus 190 ~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~ 269 (576)
+..+..+-|.. |.+ +
T Consensus 332 -----------------------------------------------------~~d~~v~~KsD---G~~--------~- 346 (607)
T 1f7u_A 332 -----------------------------------------------------KLGKAIVQKSD---GTT--------L- 346 (607)
T ss_dssp -----------------------------------------------------TTCEEEEECTT---SCC--------C-
T ss_pred -----------------------------------------------------CCCceeEeccC---CCc--------C-
Confidence 00000111111 111 0
Q ss_pred EEeecccchhhh-cchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeecc
Q psy2393 270 VWLDAPIGYLAS-LKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGF 348 (576)
Q Consensus 270 vw~d~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~ 348 (576)
|.+. ......+ +..+ ...++|++.|.||......++ +++.++|++.+..+.|.+|
T Consensus 347 --------Y~t~Dia~~~~k------------~~~~---~~d~~IyV~g~~q~~~f~q~~-~~~~~lG~~~~~~~~Hv~f 402 (607)
T 1f7u_A 347 --------YLTRDVGAAMDR------------YEKY---HFDKMIYVIASQQDLHAAQFF-EILKQMGFEWAKDLQHVNF 402 (607)
T ss_dssp --------HHHHHHHHHHHH------------HHHH---CCSEEEEECCGGGHHHHHHHH-HHHHHTTCGGGGGEEEECC
T ss_pred --------CCCCcHHHHHHH------------Hhhc---CCCcEEEEEcChHhhHHHHHH-HHHHHcCCCcCcEEEEecc
Confidence 1110 0000000 0000 012347777777753223333 4577788876666777676
Q ss_pred EEeCCccccccCCCccChhHHhhcCCCh----------------------------hHHHHHHHhhCCCCCCCcccchhh
Q psy2393 349 MTINGKKMSKSNKIGISPLYYLKIGMNP----------------------------EWLRYYIASKLNNKIEDIDFNSQS 400 (576)
Q Consensus 349 v~~~g~KMSKS~gn~i~~~dll~~g~g~----------------------------d~lR~~l~~~~~~~~~d~~fs~~~ 400 (576)
.+++ |||||+||+|+++||++. ++. .++||++++. +++.+++||++.
T Consensus 403 g~v~--kMSkR~G~~v~L~dLlde-~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~--~~~s~~~Fd~d~ 477 (607)
T 1f7u_A 403 GMVQ--GMSTRKGTVVFLDNILEE-TKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQG--KRINNYEFKWER 477 (607)
T ss_dssp CCEE--SCCGGGTCCCBHHHHHHH-HHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSS--CTTCCEECCHHH
T ss_pred cccc--cccCCCCCcccHHHHHHH-HHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhcc--CCCCCcccCHHH
Confidence 4444 699999999999999998 633 5899999997 778899999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHcC-C-----CCCCc-cc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy2393 401 FISCVNSDLIGKYINIASRSSSFIEKYFK-G-----YLNMK-WV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIE 472 (576)
Q Consensus 401 ~~~~~~~~~~~~~~n~~~R~~~~~~~~~~-~-----~~~~~-~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~ 472 (576)
+.+.. ++...+++++++|+++++++..+ . ..+.. +. +++..|+..|..+++.+.+++++++++.++.+|++
T Consensus 478 ~~~~~-g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~ 556 (607)
T 1f7u_A 478 MLSFE-GDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFK 556 (607)
T ss_dssp HHCCS-SSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHh-ccchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 98875 45667999999999999998621 0 00101 21 12278999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCcc
Q psy2393 473 QTNFINIFFDQNKPW 487 (576)
Q Consensus 473 ~~~~~n~y~~~~k~~ 487 (576)
++..+|+||+.++..
T Consensus 557 La~~fn~fY~~~~Vl 571 (607)
T 1f7u_A 557 LTHQVSSCYDVLWVA 571 (607)
T ss_dssp HHHHHHHHHHHCCST
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999999854
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-32 Score=298.41 Aligned_cols=283 Identities=14% Similarity=0.125 Sum_probs=183.7
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCccc--HHH---HHHHHHc--CCCH----
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHG--AAI---MIAAEKA--GMTP---- 81 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G--~~i---~~~a~~~--g~~~---- 81 (576)
+.+||.+.|||||++||||+|+++++|+++||++++| ++|.|+.++||+| .+| +.++.+. |.++
T Consensus 20 ~~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g-----~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p 94 (523)
T 1irx_A 20 EKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKG-----YEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVP 94 (523)
T ss_dssp SEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTT-----CEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSC
T ss_pred CeEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcC-----CCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCC
Confidence 4678877899999999999999999999999999999 9999999999999 777 5555555 8877
Q ss_pred ------HHHHHHHHHHHHHHHhhcCccccccccCCChhhHH-HHHHHHHHHHhcCC-cEEeccee-------eeecCCCC
Q psy2393 82 ------KEFINNISSNRKKYLDGFYIKFDNWYSTDSIENID-LVQKIYDTLYNKAK-LIINKKIN-------QFFDPIKN 146 (576)
Q Consensus 82 ------~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~-~v~~~~~~L~~~~g-~iy~~~~~-------~~~~~~~~ 146 (576)
+++++++.+.|.++|++|||++|.+ ++++. |.. .+++++.+|. ++| .||.-... ..||. +
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~-~~~g~~~~~i~~L~-~~G~~iy~~~~~~~g~~~~~~y~~--~ 169 (523)
T 1irx_A 95 DPWGCHESYAEHFMRKFEEEVEKLGIEVDLL-YASEL-YKRGEYSEEIRLAF-EKRDKIMEILNKYREIAKQPPLPE--N 169 (523)
T ss_dssp CTTSSSSSHHHHHHHHHHHHHHTTTCCCEEE-EHHHH-HHTTTTHHHHHHHH-HTHHHHHHHHHHHHHHTTCCCCCT--T
T ss_pred cchhhHHHHHHHHHHHHHHHHHHcCCCceEE-echhh-ccchHHHHHHHHHH-HchHHHHHHHHhhccccccccccC--C
Confidence 8899999999999999999999987 55532 777 8899999999 999 66632111 23322 0
Q ss_pred ccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCC
Q psy2393 147 IFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRL 226 (576)
Q Consensus 147 ~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~ 226 (576)
+++ ...+|..||+..... .......+.+.+
T Consensus 170 -~~~----------------~~~~~~~~~~~~~~~--------------~~~~~~~~~f~~------------------- 199 (523)
T 1irx_A 170 -WWP----------------AMVYCPEHRREAEII--------------EWDGGWKVKYKC------------------- 199 (523)
T ss_dssp -CCS----------------EEEECTTTCCEECEE--------------EECSSSCEEECC-------------------
T ss_pred -cee----------------ccccchhhCCccccc--------------ccCCCCceeeee-------------------
Confidence 221 112244555432110 000000111111
Q ss_pred ChhHHHHHHHHHhhcCCCCCcccccCCCCC-CeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccc
Q psy2393 227 QPEIVNKIKEWLEKDNKFNDWDISRDAPYF-GIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305 (576)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~dw~isR~~~~W-G~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w 305 (576)
+ .|...|. . .| |...|. | .+.. +.-.. .+
T Consensus 200 ------------~--~g~~~~~----d-~~~G~g~~~--------w------~~d~-~~~~~----------------~l 229 (523)
T 1irx_A 200 ------------P--EGHEGWV----D-IRSGNVKLR--------W------RVDW-PMRWS----------------HF 229 (523)
T ss_dssp ------------S--SSCCCEE----C-TTSSCEEEC--------H------HHHH-HHHHH----------------HS
T ss_pred ------------c--CCCcccc----C-CcCCCCCCC--------C------Ccch-HhhHH----------------Hc
Confidence 0 1212221 1 23 322221 1 0000 00000 01
Q ss_pred cCCCcceEEEeeecCcchh----HhHHHHHHHhcCCCCCcEEeeeccEEeC--CccccccCCCccChhHHhhcCCChhHH
Q psy2393 306 SSPNTEQYHFIGKDIFYFH----ILFWPAILKFSGRKLPNNIFVHGFMTIN--GKKMSKSNKIGISPLYYLKIGMNPEWL 379 (576)
Q Consensus 306 ~~~~~~~i~~~G~D~~~fh----~~~~~a~l~~~~~~~p~~~~~~g~v~~~--g~KMSKS~gn~i~~~dll~~g~g~d~l 379 (576)
.. .++++|+||+++| +..++++ .++|.+.| .++|||||+++ |+|||||+||+|+++++++. |++|++
T Consensus 230 ~~----~vd~~G~Dh~~~h~s~~~~~~i~~-~alG~~~p-~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~-~~pdal 302 (523)
T 1irx_A 230 GV----DFEPAGKDHLVAGSSYDTGKEIIK-EVYGKEAP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV-LEPGLV 302 (523)
T ss_dssp CC----CBCCEEHHHHSTTSHHHHHHHHHH-HHHCCCCC-BCCEECCEEESCC---------CCCCHHHHHTT-SCHHHH
T ss_pred CC----CCcCCCcCccCCCcchhhHHHHHH-HHhCCCCC-eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHH-cCHHHH
Confidence 11 2668899999999 5666663 67888777 78999999998 89999999999999999999 999999
Q ss_pred HHHHHhhCCCCCCCcccchh-hHhhhhhHHHHHHHHHH
Q psy2393 380 RYYIASKLNNKIEDIDFNSQ-SFISCVNSDLIGKYINI 416 (576)
Q Consensus 380 R~~l~~~~~~~~~d~~fs~~-~~~~~~~~~~~~~~~n~ 416 (576)
|||+++. .+..+++||++ .+.+..+ .+.++.+.
T Consensus 303 R~~l~~~--~~~~~~~fs~~~~l~~~~~--~~~~~~~~ 336 (523)
T 1irx_A 303 RFIYARH--RPNKEIKIDLGLGILNLYD--EFEKVERI 336 (523)
T ss_dssp HHHHHSS--CTTSCEEECCSTTHHHHHH--HHHHHHHH
T ss_pred HHHHHhc--CCCCCceeCcchhHHHHHH--HHHHHHHH
Confidence 9999986 34578899998 6655432 23445444
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=182.33 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=76.7
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||+|||||||++++...++| + +.+.++..+||.+.+ .-...|.+.|.+
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~-----~~G~~iLRieDtD~~-------------R~~~e~~~~I~e 153 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----K-----YDGRLILRIEDTDPR-------------RVDPEAYDMIPA 153 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----H-----TTCEEEEEECCCCGG-------------GCCTTHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----H-----cCCEEEEEECcCCcc-------------cccHHHHHHHHH
Confidence 67888999999999999999998777766 4 445666666666544 113577899999
Q ss_pred HHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|+.||+.||..++.+ +|.+...+++.+|. ++|++|.
T Consensus 154 dL~wLGl~wd~~~~qS--dr~~~y~~~~~~Li-~~G~AY~ 190 (553)
T 3aii_A 154 DLEWLGVEWDETVIQS--DRMETYYEYTEKLI-ERGGAYV 190 (553)
T ss_dssp HHHHHTCCCSEEEEGG--GGHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCCCCCcccc--cCHHHHHHHHHHHH-HcCCcee
Confidence 9999999999776655 68899999999999 9999996
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-16 Score=164.58 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=76.6
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
..++++-.+|+|||+|||||+|+++++|.++|. ..| .-++.+-.+|. ....+.+.+.
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G-----~~iLRieDtD~----------------~r~~~~~~~~ 67 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKG-----KFILRIEDTDL----------------ERSEREYEEK 67 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTC-----EEEECBCCSSC----------------CSGGGHHHHH
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCC-----eEEEEEecCCc----------------cccHHHHHHH
Confidence 356788889999999999999999999999996 678 77777665552 1223556778
Q ss_pred HHHHHhhcCcccccc---------ccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 92 RKKYLDGFYIKFDNW---------YSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~---------~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
|.++|+.+|+++|.. |+ ..++.+..+++..+|. ++|.+|.
T Consensus 68 I~~~l~wlGl~~de~p~~gg~~g~y~--QS~r~~~y~~~a~~L~-~~G~aY~ 116 (481)
T 2o5r_A 68 LMESLRWLGLLWDEGPDVGGDHGPYR--QSERVEIYREHAERLV-KEGKAYY 116 (481)
T ss_dssp HHHHHHHHTCCCSBBTTTBCTTCCCB--GGGGHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHHHHcCCCCCCCcccCCCCCcee--eeccHHHHHHHHHHHH-HCCCeeE
Confidence 899999999999853 33 3467888889999999 9999884
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-16 Score=165.09 Aligned_cols=94 Identities=16% Similarity=0.054 Sum_probs=72.7
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||.|||||||++++.+.++| .+.| .-++.+ ||.+.. ...+.+.+.|.+
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar--~~gG-----~fiLRi---eDTD~~-------------R~~~e~~~~I~e 83 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYKG-----QCNLRF---DDTNPV-------------KEDIEYVESIKN 83 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTC-----EEEEEE---CCCCGG-------------GCCHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCC-----EEEEEE---CCCCch-------------hcCHHHHHHHHH
Confidence 66777899999999999999999888887 4455 444444 444331 134678899999
Q ss_pred HHhhcCcccc-ccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d-~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|+.||+.+| ..++.+ +|.+...+...+|. ++|++|.
T Consensus 84 dL~wLGl~wde~~~~qS--er~~~~~~~a~~Li-~~G~AY~ 121 (553)
T 1qtq_A 84 DVEWLGFHWSGNVRYSS--DYFDQLHAYAIELI-NKGLAYV 121 (553)
T ss_dssp HHHHTTCCCSSSCEEGG--GGHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCCCCCCeehc--ccHHHHHHHHHHHH-HCCCcee
Confidence 9999999995 555544 57777777888999 9999996
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=161.55 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=71.1
Q ss_pred EEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2393 16 VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKY 95 (576)
Q Consensus 16 v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 95 (576)
++--+|+|||.|||||+|+++....++| ...| .-++.+-.+|. . . -.+.+.+.|.++
T Consensus 3 ~~RFAPSPtG~lHiG~artal~n~l~Ar--~~~G-----~filRieDtD~---~--------R-----~~~~~~~~i~~d 59 (492)
T 2cfo_A 3 RVRLAPSPTGNLHIGTARTAVFNWLYAR--HRGG-----KFILRIEDTDR---E--------R-----SRPEYTENILEG 59 (492)
T ss_dssp EEEECCCTTSCCBHHHHHHHHHHHHHHH--HTTC-----EEEEEECCCSS---S--------S-----CCHHHHHHHHHH
T ss_pred eEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCC-----eEEEEEeeCCc---c--------c-----cchHHHHHHHHH
Confidence 4556899999999999999999777777 3445 54555544442 1 1 125678999999
Q ss_pred HhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 96 LDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 96 l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
|++||++||. .++.+ ++.+..++++.+|. ++|++|.
T Consensus 60 L~wLGl~wde~~~~QS--~r~~~y~~~~~~Li-~~G~AY~ 96 (492)
T 2cfo_A 60 LQWLGLTWDEGPYFQS--DRLDLYRQAIQTLL-DKGLAYY 96 (492)
T ss_dssp HHHTTCCCSEEEEEGG--GCHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHcCCCCCCCCcccc--CCHHHHHHHHHHHH-HCCCceE
Confidence 9999999985 55544 67788889999999 9999996
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=169.74 Aligned_cols=245 Identities=16% Similarity=0.152 Sum_probs=145.8
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
++.+ --+|+|||+|||||+|++++.+.++|. +.| .-++.+-.+|. ..-...+.+.|
T Consensus 129 ~v~~-RFaPsPTG~LHiG~artAl~n~l~Ar~--~~G-----~~ilRieDtD~----------------~r~~~~~~~~I 184 (592)
T 3al0_C 129 LVRV-RFAPSPTGHLHVGGARTALFNWMFARK--EGG-----KFILRIEDTDT----------------ERSSREYEQQI 184 (592)
T ss_dssp CCEE-EECCCSSSCCBHHHHHHHHHHHHHHHH--HTC-----EEEECBCCCCS----------------SSCCHHHHHHH
T ss_pred eEEE-EECCCCCCCccHHHHHHHHHHHHHHHh--cCC-----cEEEEecCcCh----------------hhccHHHHHHH
Confidence 4444 445999999999999999999999994 567 65555544431 12235677899
Q ss_pred HHHHhhcCcccccc---------ccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCC
Q psy2393 93 KKYLDGFYIKFDNW---------YSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNA 163 (576)
Q Consensus 93 ~~~l~~lgi~~d~~---------~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~ 163 (576)
.++|++||++||.- ++.+ ++....++++.+|. ++|++|.- ||...+- ... ..|
T Consensus 185 ~~dL~wlGl~~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~-~~G~aY~c-----~ct~~el--~~~----~~~---- 246 (592)
T 3al0_C 185 LESLRWCGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLV-EDKRAYYV-----VYDKEDP--SKE----LFT---- 246 (592)
T ss_dssp HHHHHHTTCCCSBBTTTBCTTCCCBST--TCHHHHHHHHHHHH-HTTTEEEE-----EEETTEE--EEE----CCC----
T ss_pred HHHHHHcCCCCCCCCCcCCCCCCeeee--CCHHHHHHHHHHHH-HcCCceEe-----cCCHHHH--Hhh----cCC----
Confidence 99999999999972 3444 56688899999999 99999962 2211100 000 000
Q ss_pred CCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCch----hhHHHHHHhhhcC-CCCChhHHHHHHHHH
Q psy2393 164 KDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDK----RCIDFLRKWAIHD-KRLQPEIVNKIKEWL 238 (576)
Q Consensus 164 ~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~----~~~~~l~~~~~~~-~~~~~~~~~~~~~~l 238 (576)
.|...|.. + ..|.+.. |-+++ + .+.+. +.. ..+++
T Consensus 247 --~Y~~~~~~---------~------~~g~~~~------iR~k~--~~~~~~~~D~-----v~G~~~~~~---------- 286 (592)
T 3al0_C 247 --TYEYPHEY---------K------EKGHPVT------IKFKV--LPGKTSFEDL-----LKGYMEFDN---------- 286 (592)
T ss_dssp --CSSCCHHH---------H------HTTCCEE------EEECC--CSSCCEECCT-----TTCSEECCS----------
T ss_pred --CCCcHHHH---------h------hcCCCce------EEEEC--CCCCceeeec-----ccceeeecc----------
Confidence 00000000 0 0011111 11122 1 00000 100 01111
Q ss_pred hhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchh-hhcchhhhhCCCCCcccccccccccccCCCcceEEEe-
Q psy2393 239 EKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYL-ASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI- 316 (576)
Q Consensus 239 ~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~- 316 (576)
....||.|-|.. |.|. |. +..- ++. ...+.|++
T Consensus 287 ---~~~~D~Vl~R~d---g~pt-----------------Y~~a~vv------------------DD~----~~githvir 321 (592)
T 3al0_C 287 ---STLEDFIIMKSN---GFPT-----------------YNFAVVV------------------DDH----LMRISHVFR 321 (592)
T ss_dssp ---SSSCCEEEECTT---SCCC-----------------HHHHHHH------------------HHH----HTTCSBCCE
T ss_pred ---ccCCCeEEEcCC---CCee-----------------hhhHHHH------------------HHH----hcCCCeEEE
Confidence 244677777765 4431 21 1110 000 01125555
Q ss_pred eecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhC
Q psy2393 317 GKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKL 387 (576)
Q Consensus 317 G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~ 387 (576)
|.|++. ++.....+..++|.+.|. +.|+.+++. +|+|||||.|+ ++++++.+.||.++++|.|++..+
T Consensus 322 G~D~~~-~t~~q~~l~~alg~~~P~-~~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG 390 (592)
T 3al0_C 322 GEDHLS-NTPKQLMIYEAFGWEAPV-FMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLG 390 (592)
T ss_dssp EGGGGG-GHHHHHHHHTTTTCCCCB-CCEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTT
T ss_pred chhhHh-CHHHHHHHHHHhCCCCCe-EEEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 999974 444445567888988774 456666655 89999999998 689999999999999999998864
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=157.74 Aligned_cols=260 Identities=16% Similarity=0.130 Sum_probs=153.1
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||.|||||+|+++....++| ...| .-++++-.+|. + .....+.+.|.+
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar--~~~G-----~filRieDtD~---~-------------R~~~~~~~~I~~ 82 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFAR--KEGG-----KFILRIEDTDT---E-------------RSSREYEQQILE 82 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHH--HHTC-----EEEECBCCCCT---T-------------TCCHHHHHHHHH
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHH--HcCC-----EEEEEEeeCCc---c-------------cccHHHHHHHHH
Confidence 56777899999999999999999999988 4566 55555544432 2 123567789999
Q ss_pred HHhhcCcccccc---------ccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCC
Q psy2393 95 YLDGFYIKFDNW---------YSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKD 165 (576)
Q Consensus 95 ~l~~lgi~~d~~---------~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~ 165 (576)
+|++||++||.- ++.+ ++.+..+++..+|. ++|++|.- ||...+- ... . -|
T Consensus 83 dL~wlGl~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~-~~G~aY~c-----~ct~eel--~~~--~--~~------ 142 (488)
T 3afh_A 83 SLRWCGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLV-EDKRAYYV-----VYDKEDP--SKE--L--FT------ 142 (488)
T ss_dssp HHHHTTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHH-HTTSEEEE-----EECSSST--TSE--E--EE------
T ss_pred HHHHcCCCCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHH-HcCCeEec-----CCCHHHH--Hhh--c--CC------
Confidence 999999999973 3433 56788899999999 99999962 2221110 000 0 00
Q ss_pred CCCCccccCCCcCCCCccCCCcccCCCCccEEee-ec---ceeEecCchhhHHHHHHhhhcC-CCCChhHHHHHHHHHhh
Q psy2393 166 QYGDFCECCSSIYTPTKLINPYSILSGTKPIIKS-SK---HFFFKLSDKRCIDFLRKWAIHD-KRLQPEIVNKIKEWLEK 240 (576)
Q Consensus 166 ~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~-~~---~~f~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~ 240 (576)
.|...|.. + ..|.+..+|. .. --|-++ +.. ..+++
T Consensus 143 ~Y~~~~~~---------~------~~G~~~~iR~k~~~~~~~~~D~-------------v~G~~~~~~------------ 182 (488)
T 3afh_A 143 TYEYPHEY---------K------EKGHPVTIKFKVLPGKTSFEDL-------------LKGYMEFDN------------ 182 (488)
T ss_dssp ESSCCHHH---------H------HTTCCEEEEECCCSSEEEEEET-------------TTEEEEEEG------------
T ss_pred CCCchhhH---------H------hcCCCceEEEECCCCceeEEec-------------cceeEeecC------------
Confidence 00000000 0 0011111110 00 001011 000 00111
Q ss_pred cCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchh-hhcchhhhhCCCCCcccccccccccccCCCcceEEEe-ee
Q psy2393 241 DNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYL-ASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI-GK 318 (576)
Q Consensus 241 ~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~-G~ 318 (576)
....||.|-|.. |.|. |- +..- ++. ...+.|++ |.
T Consensus 183 -~~~~D~Vl~R~D---G~Pt-----------------Y~lA~vV------------------DD~----~mgIThViRG~ 219 (488)
T 3afh_A 183 -STLEDFIIMKSN---GFPT-----------------YNFAVVV------------------DDH----LMRISHVFRGE 219 (488)
T ss_dssp -GGSCCEEEECTT---SCBC-----------------HHHHHHH------------------HHH----HTTCSEEEEEG
T ss_pred -CCCCCeEEEecC---CCee-----------------hhhHHHH------------------HHH----hcCCCEEEEch
Confidence 134577777665 4431 21 1110 000 11236666 99
Q ss_pred cCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccc
Q psy2393 319 DIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFN 397 (576)
Q Consensus 319 D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs 397 (576)
|++. ++.....+..++|.+.| .+.|+.+++. +|+|||||.|+ ++++++.+.||.+++|+.|++..+.....+-.|+
T Consensus 220 D~l~-~tp~q~~l~~aLG~~~P-~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s 296 (488)
T 3afh_A 220 DHLS-NTPKQLMIYEAFGWEAP-VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGDEIFT 296 (488)
T ss_dssp GGGG-GHHHHHHHHHHHTCCCC-EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCC
T ss_pred hhhh-CHHHHHHHHHHcCCCCC-eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCC
Confidence 9973 34444456788898877 5667778766 89999999998 6899999999999999999998643322223456
Q ss_pred hhhHhh
Q psy2393 398 SQSFIS 403 (576)
Q Consensus 398 ~~~~~~ 403 (576)
.+++.+
T Consensus 297 ~~e~i~ 302 (488)
T 3afh_A 297 IEEKLQ 302 (488)
T ss_dssp HHHHGG
T ss_pred HHHHHh
Confidence 555433
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-14 Score=151.88 Aligned_cols=273 Identities=18% Similarity=0.224 Sum_probs=155.6
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||++||||+|+++..+.++| ...| .-++.+-.+|.. ...+.+.+.|.+
T Consensus 26 v~~RFAPSPTG~lHiG~~rtal~n~l~Ar--~~~G-----~filRieDtD~~----------------R~~~~~~~~i~~ 82 (490)
T 4g6z_A 26 VRTRFAPSPTGFIHLGNIRSALYPWAFAR--KMKG-----TFVLRIEDTDVE----------------RSSQEAVDAILE 82 (490)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHH--HTTC-----EEEEEECCCCGG----------------GCCHHHHHHHHH
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCC-----eEEEEeCCCCcc----------------cccHHHHHHHHH
Confidence 56677899999999999999999999888 3456 666666555531 113578899999
Q ss_pred HHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcccccc----ceeccCCCCCCCCCCCC
Q psy2393 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDR----YIKGECPICNAKDQYGD 169 (576)
Q Consensus 95 ~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~----~v~~~~p~c~~~~~~g~ 169 (576)
+|++||++||. .++.+ ++.+..++++.+|. ++|++|. -||...+ +... .-.|.-| .|..
T Consensus 83 dl~wlGl~~d~~~~~qS--~r~~~y~~~~~~Li-~~G~aY~-----C~ct~ee--l~~~r~~~~~~~~~~------~Y~~ 146 (490)
T 4g6z_A 83 GMAWLGLDYDEGPYYQM--QRMDRYREVLAQMQ-EKGLVYP-----CYMSTEE--LDALRERQRAAGEKP------RYDG 146 (490)
T ss_dssp HHHHTTCCCSEEEEEGG--GCHHHHHHHHHHHH-HTTSEEE-----ECC---------------------------CCCC
T ss_pred HHHHcCCCCCCCCcccc--cCHHHHHHHHHHHH-HCCCEEe-----CCCCHHH--HHHHHHHHHhcCCCC------CCCc
Confidence 99999999995 34433 67888899999999 9999995 2232211 1000 0000000 0111
Q ss_pred ccccCCCcCCCCccCCCcccCCCCccEEeee----cceeE-ecCchhhHHHHHHhhhcC-CCCChhHHHHHHHHHhhcCC
Q psy2393 170 FCECCSSIYTPTKLINPYSILSGTKPIIKSS----KHFFF-KLSDKRCIDFLRKWAIHD-KRLQPEIVNKIKEWLEKDNK 243 (576)
Q Consensus 170 ~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~----~~~f~-~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 243 (576)
.|-+ .++++... ...|.+..+|-. ....+ ++ +.. ..++. ..
T Consensus 147 ~cr~----~~~~~~~~---~~~g~~~~~R~k~~~~~~~~~~D~-------------i~G~~~~~~-------------~~ 193 (490)
T 4g6z_A 147 TWRP----EPGKVLPE---PPAGVAPVLRFRNPLTGTVAWDDA-------------VKGRVEISN-------------EE 193 (490)
T ss_dssp TTCC----CTTCCCCC---CCTTCCCEEEECCCCSSEEEEEET-------------TTEEEEEEG-------------GG
T ss_pred cccc----CChhhhhh---hhcCCCceEEEecCCCCcEEEEEe-------------eeeeeeecc-------------cc
Confidence 1210 00000000 000111111100 00000 00 000 00111 24
Q ss_pred CCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEe-eecCcc
Q psy2393 244 FNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFI-GKDIFY 322 (576)
Q Consensus 244 ~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~-G~D~~~ 322 (576)
+.|+.|-|.. |.|. |-.+. .. ++ ....+.||+ |.|++.
T Consensus 194 ~~D~Vl~R~D---G~pt-----------------Y~lA~--vV---------------DD----~~mgIThViRG~D~l~ 232 (490)
T 4g6z_A 194 LDDLVVARPD---GTPM-----------------YNFCV--VV---------------DD----LDMGITHVIRGDDHVN 232 (490)
T ss_dssp CCCCEEECTT---SCBC-----------------HHHHH--HH---------------HH----HHTTCCEEEEEGGGGG
T ss_pred CCCeEEEeeC---CCcc-----------------chhHH--HH---------------HH----HhcCCCEEEecccccc
Confidence 5677777765 4321 21110 00 00 012246777 999973
Q ss_pred hhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhH
Q psy2393 323 FHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSF 401 (576)
Q Consensus 323 fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~ 401 (576)
.+..+..+..++|.+.| .+.|+.+++. +|+||||+.|. +++.++.+.||.|++++-|++..+......-.||.+++
T Consensus 233 -~tprq~~l~~aLG~~~P-~f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~el 309 (490)
T 4g6z_A 233 -NTPRQINILRALGGEVP-VYAHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQF 309 (490)
T ss_dssp -GHHHHHHHHHHTTCCCC-EEEEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHH
T ss_pred -ChHHHHHHHHHcCCCCC-eEEEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHH
Confidence 23344456788999877 4666777776 89999999985 79999999999999999999986433222224676665
Q ss_pred hh
Q psy2393 402 IS 403 (576)
Q Consensus 402 ~~ 403 (576)
.+
T Consensus 310 i~ 311 (490)
T 4g6z_A 310 VE 311 (490)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.3e-16 Score=168.98 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=74.6
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||.|||||||++++...++| .+.| .|+..+||.+.+ .-...|.+.|.+
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar--~~gG--------~fiLRIEDTD~~-------------R~~~e~~~~Ile 123 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTAR--QYGG--------QFNLRMDDTNPE-------------LARQEYVDSIAD 123 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTC--------EEEEEECCCCTT-------------TCCHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCC--------EEEEEECcCCcc-------------cccHHHHHHHHH
Confidence 67777899999999999999999877777 3344 555555555433 114678899999
Q ss_pred HHhhcCcccc-ccccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFD-NWYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d-~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||+.|| ..++.+ +|.+....++.+|. ++|++|.
T Consensus 124 dL~wLGl~wde~~~~qS--er~d~y~e~a~~LI-~~G~AY~ 161 (851)
T 2hz7_A 124 DLKWLGLDWGEHFYYAS--DYFDRYYAYAEQLI-RQGDAYV 161 (851)
T ss_dssp HHHHHTCCCTTCEEEGG--GGHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCCCCCcccHh--hhHHHHHHHHHHHH-HCCCcEe
Confidence 9999999995 555544 68889999999999 9999996
|
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-15 Score=153.99 Aligned_cols=89 Identities=19% Similarity=0.223 Sum_probs=65.2
Q ss_pred eEEEe-eecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCC
Q psy2393 312 QYHFI-GKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNN 389 (576)
Q Consensus 312 ~i~~~-G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~ 389 (576)
+.|++ |.|++. +......+..++|.+.| .+.++.+++. +|+|||||.|+. +++++.+.||.+++||.|++..+..
T Consensus 200 ithvirG~D~~~-~t~~q~~l~~alg~~~p-~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~ 276 (468)
T 1j09_A 200 VTDVIRAEEWLV-STPIHVLLYRAFGWEAP-RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFS 276 (468)
T ss_dssp CCEEEEEGGGGG-GHHHHHHHHHHHTCCCC-EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCC
T ss_pred CCeEEEChhhhh-hHHHHHHHHHHcCCCCC-eEEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccC
Confidence 35666 999974 44444556788898877 4556777666 899999999998 8999999999999999999986433
Q ss_pred CCCC-cccchhhHhh
Q psy2393 390 KIED-IDFNSQSFIS 403 (576)
Q Consensus 390 ~~~d-~~fs~~~~~~ 403 (576)
...+ -.|+.+++.+
T Consensus 277 ~~~~~~~~~~~el~~ 291 (468)
T 1j09_A 277 MPDGREIFTLEEFIQ 291 (468)
T ss_dssp CTTCCSCCCHHHHHH
T ss_pred CcccccCCCHHHHHh
Confidence 2221 3466655543
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-14 Score=148.90 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=74.6
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|.|||.|||||+|++++...++| ...| .-++++-.+|. ......+.+.|.+
T Consensus 7 vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar--~~gG-----~fiLRieDtD~----------------~R~~~~~~~~I~~ 63 (498)
T 2ja2_A 7 VRVRFCPSPTGTPHVGLVRTALFNWAYAR--HTGG-----TFVFRIEDTDA----------------QRDSEESYLALLD 63 (498)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH--HHTC-----EEEECBCCCCT----------------TTCCHHHHHHHHH
T ss_pred eeEEECcCCCCCccHHHHHHHHHHHHHHH--HcCC-----EEEEEECcCCC----------------cccChHHHHHHHH
Confidence 55666899999999999999999999999 5667 65666655432 1233567789999
Q ss_pred HHhhcCccccc---------cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDN---------WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~---------~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|+++|++||- .++.+ ++.+..+++..+|. ++|.+|.
T Consensus 64 ~L~wlGl~wDegp~~gG~~~~~~QS--~r~~~y~~~~~~L~-~~g~aY~ 109 (498)
T 2ja2_A 64 ALRWLGLDWDEGPEVGGPYGPYRQS--QRAEIYRDVLARLL-AAGEAYH 109 (498)
T ss_dssp HHHHHTCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHcCCCcCCCcCcCCCCCCeeee--cCHHHHHHHHHHHH-HcCCeEE
Confidence 99999999986 44433 67788889999999 9999996
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=143.84 Aligned_cols=94 Identities=15% Similarity=0.224 Sum_probs=72.3
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+++--+|+|||+|||||+|+++....++| + +.+.|+.-+||.+.+ .-.+.+.+.|.+
T Consensus 6 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar-----~-----~~g~~ilRieDtD~~-------------R~~~~~~~~I~~ 62 (298)
T 1nzj_A 6 YIGRFAPSPSGELHFGSLIAALGSYLQAR-----A-----RQGRWLVRIEDIDPP-------------REVPGAAETILR 62 (298)
T ss_dssp CEEEECCCTTSCCCHHHHHHHHHHHHHHH-----H-----TTCEEEEEECCSCGG-------------GSCTTHHHHHHH
T ss_pred eEEEECcCCCCCccHHHHHHHHHHHHHHH-----h-----cCCeEEEEEecCCch-------------hhHHHHHHHHHH
Confidence 56677899999999999999986666665 3 445566556665543 112567899999
Q ss_pred HHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++|||+||. .++.+ ++.+..++++.+|. ++|++|.
T Consensus 63 dL~~LGl~~D~~~~~qS--er~~~y~~~~~~L~-~~G~aY~ 100 (298)
T 1nzj_A 63 QLEHYGLHWDGDVLWQS--QRHDAYREALAWLH-EQGLSYY 100 (298)
T ss_dssp HHHHTTCCCSSCCEEGG--GCHHHHHHHHHHHH-HTTCEEE
T ss_pred HHHHcCCCCCCCCeeee--CCHHHHHHHHHHHH-HcCCccc
Confidence 99999999985 44444 57788899999999 9999996
|
| >4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-13 Score=142.93 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=66.8
Q ss_pred ceEEEe-eecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCC
Q psy2393 311 EQYHFI-GKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLN 388 (576)
Q Consensus 311 ~~i~~~-G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~ 388 (576)
.+.||+ |.|++. .+..+..+..++|.+.|. +.|+.+++. +|+|+||+.| ..+++++.+.||-|++|.-|++.-+.
T Consensus 229 gITHViRG~D~l~-sTp~q~~l~~alg~~~P~-y~H~pli~~~~g~kLSKR~~-~~~v~~~~~~G~lPeAl~NyLalLGw 305 (512)
T 4gri_A 229 KITHVLRAQEWVS-SGPLHVLLYKAFKWKPPI-YCHLPMVMGNDGQKLSKRHG-STALRQFIEDGYLPEAIINYVTLLGW 305 (512)
T ss_dssp TCSEEEEEGGGGG-GHHHHHHHHHHHTCCCCE-EEEECCCBCTTSSBCCTTTS-CCBHHHHHHHTCCHHHHHHHHHHSSB
T ss_pred CCceecccccccc-ccHHHHHHHHHcCCCCCe-EEecchhccccccccCcccc-cccHHHHHHcCCChHHHHHHHHHhCC
Confidence 457887 999973 233334467788988774 778888888 8999999988 57899999999999999999988643
Q ss_pred CCCC-CcccchhhHhh
Q psy2393 389 NKIE-DIDFNSQSFIS 403 (576)
Q Consensus 389 ~~~~-d~~fs~~~~~~ 403 (576)
.... .--||.+++.+
T Consensus 306 s~~~~~Eifs~~eli~ 321 (512)
T 4gri_A 306 SYDDKREFFSKNDLEQ 321 (512)
T ss_dssp CSSSSCCCCCHHHHHH
T ss_pred CCcccchhhhHHHHHH
Confidence 3212 12577776654
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.3e-06 Score=82.96 Aligned_cols=66 Identities=23% Similarity=0.075 Sum_probs=47.2
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
+.+.|.||.. |..+-.-+....+.+.| ..+++.++.. +|+|||||.||+|++.| +++++|..+.+.
T Consensus 173 ~v~~G~DQ~~-~~~l~rdla~~~~~~~p-~~l~~pll~~l~G~KMSKS~~n~I~l~d------~p~~i~~Ki~~a 239 (323)
T 2cyb_A 173 LAVGGIDQRK-IHMLARENLPRLGYSSP-VCLHTPILVGLDGQKMSSSKGNYISVRD------PPEEVERKIRKA 239 (323)
T ss_dssp EEEEEGGGHH-HHHHHHHHGGGGTCCCC-EEEEECCCBCTTSSBCCTTTTCSCBTTC------CHHHHHHHHHTS
T ss_pred EEEechhhHH-HHHHHHHHHHhcCCCCc-eEEecCcccCCCCCcccCCcCceeCCCC------CHHHHHHHHHhc
Confidence 6678999974 43332223344555543 4667777755 99999999999999886 478999998874
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-05 Score=80.62 Aligned_cols=65 Identities=22% Similarity=0.121 Sum_probs=33.4
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCC-ccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKI-GISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn-~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+.++|.||.. |..+-.-+....++..|. .+++.++.. +|+|||||.+| .|++.| +++.++=.+.+
T Consensus 181 ~v~~G~DQ~~-~~~l~rdl~~r~~~~~p~-~l~~pll~gldG~KMSKS~~ns~I~L~d------~p~~i~kKi~~ 247 (372)
T 1n3l_A 181 AQFGGIDQRK-IFTFAEKYLPALGYSKRV-HLMNPMVPGLTGSKMSSSEEESKIDLLD------RKEDVKKKLKK 247 (372)
T ss_dssp EEEEEGGGHH-HHHHHHHHGGGGTCCCCE-EEEECCCCCSSCC-------CCSCBTTC------CHHHHHHHHHT
T ss_pred EEEcChhHHH-HHHHHHHHHHHcCCCCCE-EEecCccCCCCcccccCCCCCCeEeccC------CHHHHHHHHHH
Confidence 6678999963 333322234445665554 445555555 89999999999 687754 24555555443
|
| >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00049 Score=69.65 Aligned_cols=66 Identities=15% Similarity=0.018 Sum_probs=41.1
Q ss_pred EEEeeecCcchhHhHHH----HHHHhcC--CCCCcEEee-eccEEe-CCc-cccccCCCccChhHHhhcCCChhHHHHHH
Q psy2393 313 YHFIGKDIFYFHILFWP----AILKFSG--RKLPNNIFV-HGFMTI-NGK-KMSKSNKIGISPLYYLKIGMNPEWLRYYI 383 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~----a~l~~~~--~~~p~~~~~-~g~v~~-~g~-KMSKS~gn~i~~~dll~~g~g~d~lR~~l 383 (576)
+..+|.||.. |..+-. .+-...| ++.|..++. +.++.. +|+ |||||.+|.|++.| +++.++=.+
T Consensus 165 ~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d------~p~~i~~Ki 237 (351)
T 1yi8_B 165 LVPVGDDQLP-MLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD------SADEVARKV 237 (351)
T ss_dssp EEEECGGGHH-HHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC------CHHHHHHHH
T ss_pred EEEecCCcHH-HHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC------CHHHHHHHH
Confidence 7788999974 322211 1112234 456666554 444444 887 99999999988765 356677666
Q ss_pred Hh
Q psy2393 384 AS 385 (576)
Q Consensus 384 ~~ 385 (576)
.+
T Consensus 238 ~~ 239 (351)
T 1yi8_B 238 MG 239 (351)
T ss_dssp HT
T ss_pred Hh
Confidence 65
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=1.1e-05 Score=80.72 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=41.6
Q ss_pred CCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q psy2393 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYI 101 (576)
Q Consensus 22 ~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 101 (576)
-|||.|||||..+.+.. +.++++ | +++.+..+ |.|+.-. ..+++++ +++.....+++...|+
T Consensus 11 ~PTg~lHlG~~lg~l~~--~~~lQ~--g-----~~~~~~ia-D~ha~~~-------~~~~~~l-~~~~~~~~~~~lA~Gl 72 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQ--MVDAQE--K-----SQMFMFIA-NYHAMTS-------SQDGEKL-KQNSLKAAAAFLSLGI 72 (322)
T ss_dssp CCSSCCBHHHHHHTHHH--HHHTTT--T-----SCCEEEEC-HHHHTTT-------CCCHHHH-HHHHHHHHHHHHHTTC
T ss_pred CCCccccHHHHHHHHHH--HHHHhc--C-----CCEEEEEe-cCeeecC-------CCCHHHH-HHHHHHHHHHHHHcCC
Confidence 56689999999876543 444444 8 98877665 4444321 1244443 4455567777778999
Q ss_pred ccc
Q psy2393 102 KFD 104 (576)
Q Consensus 102 ~~d 104 (576)
+++
T Consensus 73 dp~ 75 (322)
T 3tzl_A 73 DPQ 75 (322)
T ss_dssp CTT
T ss_pred Ccc
Confidence 886
|
| >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.87 E-value=4e-05 Score=79.05 Aligned_cols=54 Identities=24% Similarity=0.148 Sum_probs=26.6
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-C-CccccccCCCc-cChhH
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-N-GKKMSKSNKIG-ISPLY 368 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~-g~KMSKS~gn~-i~~~d 368 (576)
+.+.|.||.. |...-.-+....+++.| ..+++.++.. + |+|||||.+|. |++.|
T Consensus 185 ~v~~G~DQ~~-~~~l~rdl~~r~~~~~p-~~l~~pll~gl~~G~KMSKS~~ns~I~L~D 241 (394)
T 2dlc_X 185 CQFGGVDQRK-IFVLAEENLPSLGYKKR-AHLMNPMVPGLAQGGKMSASDPNSKIDLLE 241 (394)
T ss_dssp EEEEEGGGHH-HHHHHHHHGGGGTCCCC-EEEEECCCCCCC----------CCSCBTTC
T ss_pred EEecCccHHH-HHHHHHHHHHHcCCCCC-EEEecccccCCCCCCcCCCCCCCCEEeccC
Confidence 6677999963 33332334455666654 4455566554 7 99999999996 87755
|
| >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00015 Score=73.19 Aligned_cols=67 Identities=25% Similarity=0.179 Sum_probs=42.9
Q ss_pred EEEeeecCcchhHhHHHHHHH----hcC--CCCCcEEee-eccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHH
Q psy2393 313 YHFIGKDIFYFHILFWPAILK----FSG--RKLPNNIFV-HGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIA 384 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~----~~~--~~~p~~~~~-~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~ 384 (576)
+..+|.||.. |..+-.-+.. ..| ++.|..++. +.++.. +|+|||||.+|.|++.| +++.++=.+.
T Consensus 156 ~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d------sp~~i~~Ki~ 228 (340)
T 2g36_A 156 GVPVGEDQVY-HIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI------SEKELEQTIL 228 (340)
T ss_dssp EEEECGGGHH-HHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC------CHHHHHHHHH
T ss_pred EEEcccchHH-HHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC------CHHHHHHHHH
Confidence 7788999974 3222111111 223 355665554 444444 89999999999998877 5677777777
Q ss_pred hh
Q psy2393 385 SK 386 (576)
Q Consensus 385 ~~ 386 (576)
+.
T Consensus 229 ~a 230 (340)
T 2g36_A 229 RM 230 (340)
T ss_dssp TC
T ss_pred hC
Confidence 64
|
| >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00025 Score=72.44 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
.++++.|++|. -|+|+|||||..+. ..+.++++..| ..+.++.+ |.+ +......+++++. ++.
T Consensus 79 ~~~~~~vysG~-~PTG~lHLGh~v~~---~~~~~lQ~~~g-----~~v~i~I~-D~~------a~~~r~~~~e~i~-~~~ 141 (386)
T 3hzr_A 79 AKKPTFIFIQK-YPQKEVALEEYITL---EFARYLQDAFN-----IQVIIQIL-DDI------KVLNREATINEAS-KMS 141 (386)
T ss_dssp TTCCEEEEEEE-CCCSSCBGGGHHHH---HHHHHHHHHHC-----CEEEEEEC-HHH------HHHTTSCCHHHHH-HHH
T ss_pred cCCCeEEEecc-CCCCCccHHHHHHH---HHHHHHHHhcC-----CeEEEEeC-chH------HhhcCCCCHHHHH-HHH
Confidence 34566666544 77799999997664 23333444457 77777632 211 1111226676554 444
Q ss_pred HHHHHHHhhcCccccc
Q psy2393 90 SNRKKYLDGFYIKFDN 105 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d~ 105 (576)
..+.+++-++|++++.
T Consensus 142 ~~~~~~~lA~GlDp~k 157 (386)
T 3hzr_A 142 NDLMKYILAFGFNEDK 157 (386)
T ss_dssp HHHHHHHHHTCCCGGG
T ss_pred HHHHHHHHHcCCCCcc
Confidence 4677778889998763
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00024 Score=72.64 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHh-hcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQC-MQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~-~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
.++++.|++|. -|+|.+||||..+.+. .|++. ..| +++.+..+ |.|..-. ....+++++ +++
T Consensus 70 ~~~p~~i~sG~-~PTG~lHLGh~v~~~~----~~~lQ~~~g-----~~~~i~Ia-D~ha~~~-----~~~~~~e~i-~~~ 132 (392)
T 3jxe_A 70 EGRGFFLYTGR-GPSGPMHIGHIIPFFA----TKWLQEKFG-----VNLYIQIT-DDEKFLF-----KENLTFDDT-KRW 132 (392)
T ss_dssp TTCCCEEEEEE-CCSSCCBHHHHHHHHH----HHHHHHHHC-----CEEEEEEC-HHHHHHH-----CSSCCHHHH-HHH
T ss_pred cCCCeEEEecc-CCCCchhHHHHHHHHH----HHHHHHhcC-----CceEEEec-chHHhhc-----CCCCCHHHH-HHH
Confidence 34555555443 4559999999887642 23344 379 98888765 5553321 113566544 455
Q ss_pred HHHHHHHHhhcCcccc
Q psy2393 89 SSNRKKYLDGFYIKFD 104 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d 104 (576)
.....+++.++|++++
T Consensus 133 ~~~~~~~~lA~GlDp~ 148 (392)
T 3jxe_A 133 AYDNILDIIAVGFDPD 148 (392)
T ss_dssp HHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHHhCcCcc
Confidence 5567777888999886
|
| >3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0057 Score=62.79 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCCCCCC-cccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANG-ELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG-~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
.++++.|++|. -|+| .+||||..+. ..+.++++..| ..+.+..+ |.|... . ...+++++ +++
T Consensus 98 ~~~p~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~g-----~~~~i~Ia-D~~a~l--~----~~~~~e~i-~~~ 160 (406)
T 3tze_A 98 NNRPFYLYTGR-GPSSKTMHIGHTIPF---LLCKYMQDAFK-----IRLVIQIT-DDEKFL--W----KSMRLEDA-MAY 160 (406)
T ss_dssp TTCCEEEEEEE-CCCSSCCBGGGHHHH---HHHHHHHHHHT-----CCEEEEEC-HHHHHH--H----SSCCHHHH-HHH
T ss_pred cCCCeEEEEee-CCCCCcccHHHHHHH---HHHHHHHHhcC-----CcEEEEee-ChHHHc--C----CCCCHHHH-HHH
Confidence 34666666654 7778 7999997664 23333444447 77666432 333111 1 23566554 455
Q ss_pred HHHHHHHHhhcCccccc
Q psy2393 89 SSNRKKYLDGFYIKFDN 105 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d~ 105 (576)
...+.+++.++|++++.
T Consensus 161 ~~~~~~~~lA~GlDp~k 177 (406)
T 3tze_A 161 GRENIKDIVTLGFDPKL 177 (406)
T ss_dssp HHHHHHHHHTTTCCGGG
T ss_pred HHHHHHHHHHcCCCccc
Confidence 55777778889998763
|
| >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00015 Score=73.08 Aligned_cols=67 Identities=24% Similarity=0.126 Sum_probs=41.6
Q ss_pred EEEeeecCcchhHhHHH----HHHHhcC--CCCCcEEeee--ccEEe-CC-ccccccCCCccChhHHhhcCCChhHHHHH
Q psy2393 313 YHFIGKDIFYFHILFWP----AILKFSG--RKLPNNIFVH--GFMTI-NG-KKMSKSNKIGISPLYYLKIGMNPEWLRYY 382 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~----a~l~~~~--~~~p~~~~~~--g~v~~-~g-~KMSKS~gn~i~~~dll~~g~g~d~lR~~ 382 (576)
+..+|.||.. |..+-. .+-...| ++.|..+++. .++.. +| +|||||.+|.|++.| +++.++=.
T Consensus 144 lvp~G~DQ~~-~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d------~p~~i~~K 216 (337)
T 2el7_A 144 TVPVGEDQVQ-HIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE------PEESIWQK 216 (337)
T ss_dssp EEECCGGGCH-HHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS------CHHHHHHH
T ss_pred EEEcccchHH-HHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcC------CHHHHHHH
Confidence 7778999974 322211 1111224 4556555542 34444 89 899999999998866 35677777
Q ss_pred HHhh
Q psy2393 383 IASK 386 (576)
Q Consensus 383 l~~~ 386 (576)
+.+.
T Consensus 217 i~~a 220 (337)
T 2el7_A 217 IQHL 220 (337)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 6664
|
| >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00058 Score=70.89 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=47.3
Q ss_pred CCeEEEEcCCCCCC-CcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 11 ~~~~~v~~~~P~~n-G~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
++++.|++|. -|+ |.|||||..+.+. +.++++..| +.+.+..| |.|+.-- ....++.. ++++.
T Consensus 100 g~~~~vy~G~-dPTag~LHLGh~v~~~~---l~~lQ~~~g-----~~~i~lI~-D~ta~l~-----~~~~t~e~-i~~~~ 163 (432)
T 2ip1_A 100 GKPFFLYTGR-GPSSDSMHLGHMIPFVF---TKWLQEVFD-----VPLVIELT-DDEKFLF-----KHKLTIND-VKNFA 163 (432)
T ss_dssp TCCCEEEEEE-CCCSSCCBGGGHHHHHH---HHHHHHHHT-----CCEEEEEC-HHHHHHH-----CTTCCHHH-HHHHH
T ss_pred CCCeEEEEee-cCCCCCccHHHHHHHHH---HHHHHHHcC-----CeEEEEEe-cccceeC-----CCCCCHHH-HHHHH
Confidence 3455555544 666 8999999886542 334444479 98777766 3333210 01255544 45555
Q ss_pred HHHHHHHhhcCcccc
Q psy2393 90 SNRKKYLDGFYIKFD 104 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d 104 (576)
..+.+++..+|++++
T Consensus 164 ~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 164 RENAKDIIAVGFDPK 178 (432)
T ss_dssp HHHHHHHHTTTCCGG
T ss_pred HHHHHHHHHhCCCCC
Confidence 566777888898876
|
| >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00098 Score=68.26 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCCCCC-CcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc-CCCHHHHHHH
Q psy2393 10 DVRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA-GMTPKEFINN 87 (576)
Q Consensus 10 ~~~~~~v~~~~P~~n-G~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~-g~~~~~~~~~ 87 (576)
.++++.|++|. -|+ |.|||||..+.+ .+.++++..| ..|.+.. |++ .+.... ..+++++ ++
T Consensus 71 ~g~~~~vy~G~-~PTa~~lHlGh~v~~~---~~~~lQ~~~~-----~~v~i~I-----~D~--~~~~~r~~~~~e~i-~~ 133 (393)
T 3hv0_A 71 KGELFYLYTGR-GPSSESLHVGHLVPFL---FTKYLQDTFK-----VPLVIQL-----TDD--EKFIFKSNLTLEET-HN 133 (393)
T ss_dssp TTCCCEEEEEE-CCSSSSCBSTTHHHHH---HHHHHHHHHC-----CCEEEEE-----CHH--HHHHHCTTCCHHHH-HH
T ss_pred cCCCeEEEeCC-CCCCCCccHHHHHHHH---HHHHHHHhcC-----CCeEeec-----cCh--HHHhhccCCCHHHH-HH
Confidence 34455666544 667 689999966554 3444555557 6666633 333 122222 5666554 55
Q ss_pred HHHHHHHHHhhcCccccc
Q psy2393 88 ISSNRKKYLDGFYIKFDN 105 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~d~ 105 (576)
+...+.+++.++|++++.
T Consensus 134 ~~~~~~~~~lA~GlDp~k 151 (393)
T 3hv0_A 134 YAYENMKDIIACGFDPEL 151 (393)
T ss_dssp HHHHHHHHHHTTCCCTTT
T ss_pred HHHHHHHHHHHcCCCCcc
Confidence 555677788889998763
|
| >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00064 Score=70.50 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCCCC-CcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 10 ~~~~~~v~~~~P~~n-G~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
.++++.|++|. -|| |.|||||..+.+. +.++++..| +++.+..| |.++.-- . ..++++ ++++
T Consensus 105 ~~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~G-----~~~iilIg-D~ta~ig----d--~lt~e~-i~~n 167 (437)
T 1r6u_A 105 NKKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFN-----VPLVIQMT-DDEKYLW----K--DLTLDQ-AYGD 167 (437)
T ss_dssp TTCCEEEEEEE-CCCSSCCBHHHHHHHHH---HHHHHHHHT-----CCEEEEEC-HHHHHHH----S--SCCHHH-HHHH
T ss_pred cCCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhC-----CcEEEEEe-cceeeec----C--CCCHHH-HHHH
Confidence 34566666654 667 8999999887552 334444479 88777665 2332221 0 456655 3444
Q ss_pred HHHHHHHHhhcCcccc
Q psy2393 89 SSNRKKYLDGFYIKFD 104 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d 104 (576)
...+.+++..+|++++
T Consensus 168 ~~~~~~~~lA~GlDp~ 183 (437)
T 1r6u_A 168 AVENAKDIIACGFDIN 183 (437)
T ss_dssp HHHHHHHHHTTTCCGG
T ss_pred HHHHHHHHHHhCCCcc
Confidence 4556677777888765
|
| >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00031 Score=70.44 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=43.2
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
+.+.-- |||.|||||..+.+.. +.++ .. | +++.+..+ |.|+.-. ..++++ ++++...+.+
T Consensus 4 vysG~~--PTG~lHlGn~vg~l~~--~~~l-Q~-g-----~~~~~~Ia-D~ha~~~-------~~~~e~-i~~~~~~~~~ 63 (328)
T 1i6k_A 4 IFSGIQ--PSGVITIGNYIGALRQ--FVEL-QH-E-----YNCYFCIV-DQHAITV-------WQDPHE-LRQNIRRLAA 63 (328)
T ss_dssp EEEEEC--CCSCCBHHHHHHTHHH--HHHH-TT-T-----SEEEEEEC-HHHHTTS-------CCCHHH-HHHHHHHHHH
T ss_pred EEEeeC--CCCcccHHHHHHHHHH--HHHH-Hc-C-----CcEEEEEe-CceeecC-------CCCHHH-HHHHHHHHHH
Confidence 444434 4599999999987622 2233 22 8 88876654 3333221 035544 4455567888
Q ss_pred HHhhcCcccc
Q psy2393 95 YLDGFYIKFD 104 (576)
Q Consensus 95 ~l~~lgi~~d 104 (576)
++..+|++++
T Consensus 64 ~~la~Gldp~ 73 (328)
T 1i6k_A 64 LYLAVGIDPT 73 (328)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHhCCChh
Confidence 8899999987
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0016 Score=68.47 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=46.9
Q ss_pred CCeEEEEcCCCCCC-CcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNIS 89 (576)
Q Consensus 11 ~~~~~v~~~~P~~n-G~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 89 (576)
++++.|++|. -|| |.|||||..+.+. +.++++..| ++|.+..| |.++.-- . ..++++ ++++.
T Consensus 153 ~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~g-----~~~iilI~-D~~a~ig----d--~lt~e~-i~~n~ 215 (477)
T 1r6t_A 153 KKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFN-----VPLVIQMT-DDEKYLW----K--DLTLDQ-AYGDA 215 (477)
T ss_dssp TCCEEEEEEE-CCCTTCCBGGGHHHHHH---HHHHHHHHT-----CCEEEEEC-HHHHHHH----S--SCCHHH-HHHHH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhC-----CcEEEEEe-cceeeec----C--CCCHHH-HHHHH
Confidence 4566666654 667 8999999987652 233444479 88776665 2232221 0 456654 44444
Q ss_pred HHHHHHHhhcCcccc
Q psy2393 90 SNRKKYLDGFYIKFD 104 (576)
Q Consensus 90 ~~~~~~l~~lgi~~d 104 (576)
..+..++..+|++++
T Consensus 216 ~~~~~~~lA~GlDp~ 230 (477)
T 1r6t_A 216 VENAKDIIACGFDIN 230 (477)
T ss_dssp HHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHhCCCCC
Confidence 556667778888775
|
| >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00092 Score=68.05 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=41.9
Q ss_pred CCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q psy2393 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYI 101 (576)
Q Consensus 22 ~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 101 (576)
-|||.+|||| ...+ -.+.+++ ..| +++.+..+ |.|+.- -.+.|.+++++ +++...+.+++..+|+
T Consensus 43 ~PTg~lHlG~-l~~l--~~~~~lQ-~~G-----~~~~~~ia-D~~a~~----~~ps~~~~e~i-~~~~~~~~~~~la~G~ 107 (364)
T 2cya_A 43 EPSGVAHIGW-LVWM--YKVKDLV-EAG-----VDFSVLEA-TWHAYI----NDKLGGDMDLI-RAAARIVRRVMEAAGV 107 (364)
T ss_dssp CCCSSCBTHH-HHHH--HHHHHHH-HTT-----CEEEEEEC-HHHHHH----TTGGGGCHHHH-HHHHHHHHHHHHHTTC
T ss_pred CCCCCccHhH-HHHH--HHHHHHH-HCC-----CCEEEEEe-Ccchhh----CCCCCCCHHHH-HHHHHHHHHHHHHhCC
Confidence 5569999999 4332 2333333 468 88877765 334332 11223455444 4455677889999999
Q ss_pred cccc
Q psy2393 102 KFDN 105 (576)
Q Consensus 102 ~~d~ 105 (576)
+++.
T Consensus 108 dp~k 111 (364)
T 2cya_A 108 PVER 111 (364)
T ss_dssp CGGG
T ss_pred Cccc
Confidence 8874
|
| >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0012 Score=67.58 Aligned_cols=78 Identities=8% Similarity=0.078 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCCCCC-cccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYANG-ELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG-~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
.++++.|++|. -|+| .+||||..+. ..+.++++..| ..|.++.| ++- ++.....+++++ +++
T Consensus 75 ~~~~~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~~-----~~v~i~I~-----D~~--~~l~~~~~~e~i-~~~ 137 (395)
T 3i05_A 75 SGQPFYLYTGR-GPSSESMHMGHLIPF---MFTKWLQDSFR-----VPLVIQMT-----DDE--KFYFRNIPMEQV-EAM 137 (395)
T ss_dssp TTCCEEEEEEE-CCCSSCCBGGGSHHH---HHHHHHHHHHT-----CCEEEEEC-----HHH--HHHHSCCCHHHH-HHH
T ss_pred cCCCeEEEEee-cCCCccchHHHHHHH---HHHHHHHHhcC-----CcEEEEEc-----chH--HHhcCCCCHHHH-HHH
Confidence 34566666654 7778 7999997654 33444555557 77776632 222 122233666554 445
Q ss_pred HHHHHHHHhhcCcccc
Q psy2393 89 SSNRKKYLDGFYIKFD 104 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d 104 (576)
...+.+++.++|++++
T Consensus 138 ~~~~~~~~lA~GlDp~ 153 (395)
T 3i05_A 138 TTENIKDIIAMGFDPE 153 (395)
T ss_dssp HHHHHHHHHTTTCCTT
T ss_pred HHHHHHHHHHcCCCCC
Confidence 5577777888898775
|
| >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00055 Score=69.22 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=43.1
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNR 92 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 92 (576)
..+.+.-- |||.|||||..+.+..= .+++. | +++.+..+ |.|+.-.. .+++++ +.+..++
T Consensus 5 ~~i~sG~~--PTG~lHLGn~vg~l~~~--~~lQ~--~-----~~~~~~Ia-D~ha~~~~-------~d~~~i-~~~~~~~ 64 (348)
T 2yy5_A 5 KRALTGIQ--ASGKQHLGNYLGVMQSL--IELQE--Q-----CQLFVFVA-DLHSITVD-------FQPQAL-KQNNFDL 64 (348)
T ss_dssp CEEEEEEC--CCTTCBHHHHHHTGGGH--HHHHH--H-----SEEEEEEC-HHHHTTSC-------CCHHHH-HHHHHHH
T ss_pred eEEEEeeC--CCCcccHHHHHHHHHHH--HHHHh--C-----CcEEEEEc-ChhhccCC-------CCHHHH-HHHHHHH
Confidence 34445444 45999999999766222 23333 7 88766554 33332210 345443 4455667
Q ss_pred HHHHhhcCcccc
Q psy2393 93 KKYLDGFYIKFD 104 (576)
Q Consensus 93 ~~~l~~lgi~~d 104 (576)
.+++...|++++
T Consensus 65 ~~~~lA~Gldp~ 76 (348)
T 2yy5_A 65 VRTLLAVGLDPQ 76 (348)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHHhCCChh
Confidence 778888999987
|
| >3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0028 Score=64.58 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=40.4
Q ss_pred CCCCcccchHhhhHHHHH-HHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q psy2393 22 YANGELHIGHIMEYIQAD-IWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFY 100 (576)
Q Consensus 22 ~~nG~lHiGH~~~~i~~D-vl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 100 (576)
-|+|.+|||| .++.- .+.++ ...| ++|.+..| |.|+.- -.+.|.++.+ .+.....+.+.+..+|
T Consensus 64 ~PTg~lHlG~---gvl~~~~~~~l-Q~~G-----~~~~~lIa-D~ha~i----~d~~~~~~~~-i~~~~~~~~~~~~a~G 128 (373)
T 3vgj_A 64 EPSGRMHIAQ---GLLKSIIVNKL-TSNG-----CTFIFWIA-DWFAHL----NNKMSGDLKK-IKKVGSYFIEVWKSCG 128 (373)
T ss_dssp CCCSSCBHHH---HHHHHHHHHHH-HTTT-----CEEEEEEC-HHHHHH----TTGGGGCHHH-HHHHHHHHHHHHHHTT
T ss_pred CCCCCceehh---hHHHHHHHHHH-HHCC-----CcEEEEEe-cceeEe----cCCCCCCHHH-HHHHHHHHHHHHHHcC
Confidence 5558999999 22222 24444 4468 99887765 444432 1122334433 3444455667888999
Q ss_pred ccccc
Q psy2393 101 IKFDN 105 (576)
Q Consensus 101 i~~d~ 105 (576)
++++.
T Consensus 129 ~dp~k 133 (373)
T 3vgj_A 129 MNMEN 133 (373)
T ss_dssp CCSTT
T ss_pred CChhh
Confidence 98863
|
| >2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0091 Score=59.63 Aligned_cols=68 Identities=13% Similarity=0.009 Sum_probs=45.6
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+.++|.||.. |..+=.-+....+.. +...+++.++.. +|+|||||.+|.|++.| ++ .+++.++=.+.+
T Consensus 194 v~~gG~DQ~~-~i~l~rdla~r~n~~-~~~~l~~pll~gldG~KMSKS~~n~I~L~d--~~-tsp~~~~~ki~~ 262 (322)
T 2yxn_A 194 LCIGGSDQWG-NITSGIDLTRRLHQN-QVFGLTVPLITKADGTKFGKTEGGAVWLDP--KK-TSPYKFYQFWIN 262 (322)
T ss_dssp EEEECTTCHH-HHHHHHHHHHHHHCC-CCEEEECCCCBCTTSCBTTEETTEECBSST--TT-SCHHHHHHHHHT
T ss_pred EEecCchhHH-HHHHHHHHHHHhCCC-CceeeccCccCCCCcccccCCCCCeeeccC--CC-CCHHHHHHHHhC
Confidence 7788999963 322211122223332 345556666655 89999999999999998 66 788888877765
|
| >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.024 Score=57.32 Aligned_cols=69 Identities=14% Similarity=0.037 Sum_probs=34.8
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
+..+|.||.. |..+=.-+....+.. +...+++.++.- +|+|||||.||.|++.| ++ -+++.++=.+.+.
T Consensus 213 i~p~G~DQ~~-~i~l~rdla~r~n~~-~~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~-tsp~~i~~ki~~~ 282 (356)
T 2pid_A 213 VQLGGSDQLG-NIMSGYEFINKLTGE-DVFGITVPLITSTTGAKLGKSAGNAVWLNR--DK-TSPFELYQFFVRQ 282 (356)
T ss_dssp EEEEEGGGHH-HHHHHHHHHHHHSSC-CCEEEEECCCC-------------CCBSST--TT-SCHHHHHHHHHTC
T ss_pred EEeccHHHHH-HHHHHHHHHHHhCCC-CccccccccccCCCcccccCCCCCeeeccC--CC-CCHHHHHHHHHcC
Confidence 7788999963 322211123333433 345556666644 89999999999999988 45 6788888887763
|
| >1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.037 Score=57.17 Aligned_cols=68 Identities=16% Similarity=0.099 Sum_probs=44.5
Q ss_pred EEEeeecCcchhHhHHHHHHHhc-CCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFS-GRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+..+|.||.. |..+=.-+.... +.. +...+++.++.- +|+|||||.||.|++.| ++ -+|+.++=++.+
T Consensus 189 i~~gG~DQ~~-ni~~grdla~r~~~~~-~~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~-tsp~~i~~ki~~ 258 (420)
T 1jil_A 189 IQVGGSDQWG-NITSGIELMRRMYGQT-DAYGLTIPLVTKSDGKKFGKSESGAVWLDA--EK-TSPYEFYQFWIN 258 (420)
T ss_dssp EEEEEGGGHH-HHHHHHHHHHHHHCCC-CCEEEEECCCBCTTSCBTTBCSSSBCBSST--TT-SCHHHHHHHHHT
T ss_pred EEeccHHHHH-HHHHHHHHHHHhcCCC-CeeEeecccccCCccccccCCCCCeEecCC--CC-CCHHHHHHHHhc
Confidence 6778999963 322211123333 433 345666666655 99999999999999988 44 667777766665
|
| >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.033 Score=57.42 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=43.9
Q ss_pred EEEeeecCcchhHhHHHHHHHhc-CCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFS-GRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~-~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+..+|.||.. |..+=.-+.... +.. +...+++.++.- +|+|||||.||.|++.+ ++ -+|+.++=++.+
T Consensus 188 i~~gG~DQ~~-ni~lgrdlarr~~~~~-~~~~lt~pll~~ldG~KMSKS~~naI~L~d--~~-tsp~~i~qki~~ 257 (419)
T 2ts1_A 188 LQIGGSDQWG-NITAGLELIRKTKGEA-RAFGLTIPLVTKADGTKFGKTESGTIWLDK--EK-TSPYEFYQFWIN 257 (419)
T ss_dssp EEEEEGGGHH-HHHHHHHHHHHHHC---CCEEEEECCCCCTTSCCTTCCSSCCCBSST--TT-SCHHHHHHHHHT
T ss_pred EEeccHHHHH-HHHHHHHHHHHhcCCC-CeeecccccccCCCcccccCCCCCeEecCC--CC-CCHHHHHHHHhc
Confidence 6778999963 322211122333 332 345666666655 99999999999999988 44 677777766665
|
| >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.035 Score=57.40 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=44.2
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCC-ccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKI-GISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn-~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+..+|.||.. |..+=.-+....+.. +...+++-++.- +|+|||||.|| .|++.| ++ -+|+.++=++.+
T Consensus 190 i~~gG~DQ~~-ni~lgrdlarr~~~~-~~~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~-tsp~~i~qki~~ 259 (432)
T 2jan_A 190 LQIGGADQWG-NIIAGVRLVRQKLGA-TVHALTVPLVTAADGTKFGKSTGGGSLWLDP--QM-TSPYAWYQYFVN 259 (432)
T ss_dssp EEEECSTTHH-HHHHHHHHHHHHHCC-CCEEEECCCCBCTTSCBTTBCSSSCBCBSST--TT-SCHHHHHHHHHT
T ss_pred EEeccHHHHH-HHHHHHHHHHHhCCC-CccccccccccCCCcCcCCCCCCCCeEEccC--CC-CCHHHHHHHHhc
Confidence 7788999963 322211122223333 345566666655 99999999999 999987 44 677777777665
|
| >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.043 Score=56.84 Aligned_cols=65 Identities=25% Similarity=0.267 Sum_probs=42.9
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCc-cccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGK-KMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~-KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+..+|.||. +|..+=.-+....+.. |...+++.++.- +|. |||||.||.|++.| +++.++=++.+
T Consensus 190 l~~gG~DQ~-~ni~l~rdlarr~~~~-~~~~lt~pll~gldG~~KMSKS~~n~I~L~d------sp~~i~~Ki~~ 256 (432)
T 1h3f_A 190 VEMGGTDQR-FNLLVGREVQRAYGQS-PQVCFLMPLLVGLDGREKMSKSLDNYIGLTE------PPEAMFKKLMR 256 (432)
T ss_dssp EEEEEGGGH-HHHHHHHHHHHHTTCC-CCEEEEECCCBCTTSSSBCCGGGTCCCBTTS------CHHHHHHHHHT
T ss_pred EEEechHHH-HHHHHHHHHHHHhCCC-CceEeecccccCCCCccccCcCCCCeeCCCC------CHHHHHHHHhC
Confidence 778999996 3433222233444543 455667777665 886 99999999999877 45666655554
|
| >3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.14 Score=51.99 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
+.+++++|.+|. -|+|.+||||..+.+ ..+++...| ++|.+.. .|.|-.-. ......+..+..
T Consensus 66 e~gk~~~v~sG~-~PTG~lHLGhyv~~~----~~~~lq~~~-----~~~~~~I-aD~ha~t~------~~~~~~e~~r~~ 128 (372)
T 3a04_A 66 ARGERVAVLTGF-MPSGKFHFGHKLTVD----QLIYLQKNG-----FKVFVAI-ADAEAFAV------RRIGREEAVRIA 128 (372)
T ss_dssp HTTCCCEEEEEE-CCCSCCBHHHHHHHH----HHHHHHHTT-----CEEEEEE-CHHHHHHT------TCCCHHHHHHHH
T ss_pred HcCCCCEEEeCc-CCCcHhHHHHHHHHH----HHHHHHhCC-----CeEEEEE-ecchhhcc------CCCCCHHHHHHH
Confidence 355677777664 678999999987432 234455568 9987654 35553221 122334445566
Q ss_pred HHHHHHHHhhcCcccc
Q psy2393 89 SSNRKKYLDGFYIKFD 104 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d 104 (576)
..+..+++-++|++++
T Consensus 129 ~~~~~~~~lA~GlDP~ 144 (372)
T 3a04_A 129 VEEYIANMIALGLDPK 144 (372)
T ss_dssp HHTTHHHHHHHTCCTT
T ss_pred HHHHHHHHHHcCCChH
Confidence 6677778889999986
|
| >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=0.067 Score=53.14 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=40.4
Q ss_pred CCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q psy2393 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYI 101 (576)
Q Consensus 22 ~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 101 (576)
-|||+||||| ...+ -.+.++ ...| +++.+..| |.|+.-. . ..++++ ++++...+.+++.++|+
T Consensus 36 ~PTg~lHlGh-l~~l--~~~~~l-Q~~g-----~~~~~~i~-D~~a~~~----~--~~~~e~-i~~~~~~~~~~~~a~G~ 98 (314)
T 2zp1_A 36 EPSGKIHLGH-YLQI--KKMIDL-QNAG-----FDIIILLA-DLAAYLN----Q--KGELDE-IRKIGDYNKKVFEAMGL 98 (314)
T ss_dssp CCCSSCBHHH-HHHH--HHHHHH-HHTT-----EEEEEEEC-HHHHHHT----T--CCCHHH-HHHHHHHHHHHHHHTTC
T ss_pred CCCCCcchhh-HHHH--HHHHHH-HHCC-----CCEEEEEe-cceEecC----C--CCCHHH-HHHHHHHHHHHHHhcCC
Confidence 4468999999 4433 223333 3458 88877664 3333221 1 113443 45566888889999998
Q ss_pred cccccc
Q psy2393 102 KFDNWY 107 (576)
Q Consensus 102 ~~d~~~ 107 (576)
+ ..|+
T Consensus 99 d-~~~~ 103 (314)
T 2zp1_A 99 K-AKYV 103 (314)
T ss_dssp C-CEEE
T ss_pred C-eEEE
Confidence 8 4444
|
| >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.39 Score=47.57 Aligned_cols=50 Identities=18% Similarity=-0.046 Sum_probs=31.8
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CC-ccccccCCCccChhH
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NG-KKMSKSNKIGISPLY 368 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g-~KMSKS~gn~i~~~d 368 (576)
+.++|.||... ..+ ......+ +..++++.++.. +| +|||||.||.|++.|
T Consensus 166 ~v~~G~DQ~~~-~~l----~R~i~~~-~~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d 217 (314)
T 2zp1_A 166 VAVGGMEQRKI-HML----ARELLPK-KVVCIHNPVLTGLDGEGKMSSSKGNFIAVDD 217 (314)
T ss_dssp EEEEEGGGHHH-HHH----HHHHSSS-CCEEEEECCCBCTTSSSBCCTTTTCSCBTTC
T ss_pred EEEcChhHHHH-HHH----HHHhcCC-CcEEeeccccccCCcccccCCCCcceecCCC
Confidence 67789999642 211 1112212 234556666665 88 799999999998765
|
| >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A | Back alignment and structure |
|---|
Probab=90.83 E-value=0.14 Score=52.41 Aligned_cols=43 Identities=19% Similarity=-0.023 Sum_probs=32.6
Q ss_pred cEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 341 NNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 341 ~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
...+++.++.. +|+|||||.||.|++.| +. -+++.++=++.+.
T Consensus 278 ~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~-tsp~~i~qki~~~ 321 (392)
T 1y42_X 278 CVGFTVPLLTDSSGAKFGKSAGNAIWLDP--YQ-TSVFDFYGYFVRR 321 (392)
T ss_dssp CEEEECCCCBCTTCCBTTBCSSSBCBSST--TT-SCHHHHHHHHHTC
T ss_pred ccccccccCcCCchhhccCCCCCeeeccC--CC-CCHHHHHHHHHcC
Confidence 45666677666 99999999999999987 34 5677777776653
|
| >3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.76 E-value=0.25 Score=50.27 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=44.2
Q ss_pred CeEE----EEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHH
Q psy2393 12 RRIF----VTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (576)
Q Consensus 12 ~~~~----v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~ 87 (576)
++++ |++| --|||.+||||..+.+.. +.+ +. .| +++.+..+ |.|..-. ..++.++ +.
T Consensus 30 ~p~~m~~ri~sG-~~PTG~lHLGhyvGal~~--~~~-LQ-~~-----~~~~~~Ia-D~hAlt~-------~~~~~~l-r~ 90 (388)
T 3prh_A 30 DPFTMKQTIFSG-IQPSGSVTLGNYIGAMKQ--FVE-LQ-HD-----YNSYFCIV-DQHAITV-------PQDRLEL-RK 90 (388)
T ss_dssp -----CCEEEEE-ECCCSCCBHHHHHHTHHH--HHH-TT-TT-----SEEEEEEC-HHHHTTS-------CCCHHHH-HH
T ss_pred CCcccCCeEEEe-eCCCCcchHHHHHHHHHH--HHH-HH-cc-----CcEEEEEe-cceeeec-------CCCHHHH-HH
Confidence 5665 4543 367799999998876542 112 22 38 88877653 5454331 2456544 45
Q ss_pred HHHHHHHHHhhcCcccc
Q psy2393 88 ISSNRKKYLDGFYIKFD 104 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~d 104 (576)
...+...++...|++++
T Consensus 91 ~~~~~aa~~lA~GlDp~ 107 (388)
T 3prh_A 91 NIRNLAALYLAVGLDPE 107 (388)
T ss_dssp HHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHhCCChh
Confidence 55677788888999987
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=90.53 E-value=0.76 Score=47.52 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCCCC-CcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHH
Q psy2393 10 DVRRIFVTTALPYAN-GELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNI 88 (576)
Q Consensus 10 ~~~~~~v~~~~P~~n-G~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 88 (576)
.++++.|++|. -|| |.|||||..+.+ .+.++++..| ..+.+. .|++ .....+...+++++ +++
T Consensus 88 ~g~p~~vytG~-dPTagsLHLGH~v~~~---~l~~lQ~~~g-----~~v~I~-----IgD~-~a~~~r~~lt~E~I-~~n 151 (451)
T 3foc_A 88 KGHPIYIYTGR-GPSSGALHLGHLLPFI---FTKYLQDAFK-----CYVVIQ-----ITDD-EKFLRNRSLSYAEV-DSY 151 (451)
T ss_dssp TTCCEEEEEEE-CCCSSCCBHHHHHHHH---HHHHHHHHHT-----CEEEEE-----ECHH-HHHHHCTTCCHHHH-HHH
T ss_pred cCCCeEEEecC-CCCCCCccHHHHHHHH---HHHHHHHccC-----ceEEEE-----eeCc-HHhhcccCCCHHHH-HHH
Confidence 34566666655 677 899999966543 3334444447 666664 3343 11112225677554 555
Q ss_pred HHHHHHHHhhcCcccc
Q psy2393 89 SSNRKKYLDGFYIKFD 104 (576)
Q Consensus 89 ~~~~~~~l~~lgi~~d 104 (576)
...+.+++.++|++++
T Consensus 152 ~~~~~~~~lA~GlDpe 167 (451)
T 3foc_A 152 TRENIKDIIACGFDPD 167 (451)
T ss_dssp HHHHHHHHHTTTCCGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 5577778888999876
|
| >2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} | Back alignment and structure |
|---|
Probab=88.33 E-value=0.23 Score=50.01 Aligned_cols=77 Identities=13% Similarity=0.009 Sum_probs=43.5
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
+..+.+.- -|+|.|||||... .--.+.+++ ..| +++.+..| |.|+.- ..+.|.++++ +++....
T Consensus 40 ~~~vy~G~--~PTg~lHlGhyl~--~l~~~~~lQ-~~G-----~~~~~~i~-D~~a~~----~~~~~~~~e~-i~~~~~~ 103 (348)
T 2j5b_A 40 IFTAYNGF--EPSGRIHIAQALI--TVMNTNNMI-ECG-----GQMIIYIA-DWFAKM----NLKMNGDINK-IRELGRY 103 (348)
T ss_dssp CEEEEEEE--CCCSSCBHHHHHH--HHHHHHHHH-HTT-----EEEEEEEC-HHHHHH----TTGGGGCHHH-HHHHHHH
T ss_pred CCEEEecc--CCCCCCchhHHHH--HHHHHHHHH-HcC-----CcEEEEec-cchhhh----CCCCCCCHHH-HHHHHHH
Confidence 33344443 4559999999322 222334444 458 98877664 333322 1122345544 4555566
Q ss_pred HHHHHhhcCcccc
Q psy2393 92 RKKYLDGFYIKFD 104 (576)
Q Consensus 92 ~~~~l~~lgi~~d 104 (576)
+.+++..+|++++
T Consensus 104 ~~~~~la~Gldp~ 116 (348)
T 2j5b_A 104 FIEVFKACGINLD 116 (348)
T ss_dssp HHHHHHHTTCCGG
T ss_pred HHHHHHHhcCCcc
Confidence 7777888999876
|
| >3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=87.51 E-value=0.52 Score=47.14 Aligned_cols=65 Identities=15% Similarity=0.295 Sum_probs=41.9
Q ss_pred CCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q psy2393 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYI 101 (576)
Q Consensus 22 ~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 101 (576)
-|+|.+||||..+.+.. +.+++. + +++.+..+ |.|..-. ..+++ .++++.....+++...|+
T Consensus 14 ~PTG~lHLGhy~g~l~~--~~~lQ~--~-----~~~~~~ia-D~ha~~~-------~~~~~-~~~~~~~~~~~~~lA~Gl 75 (341)
T 3sz3_A 14 QPSGELSIGNYLGALRQ--WQQMQD--D-----YDCQYCVV-DLHAITV-------RQDPQ-ALHEATLDALAICLAVGV 75 (341)
T ss_dssp CSSSCCBHHHHHHTGGG--HHHHHH--H-----SEEEEEEC-HHHHTTS-------CCCHH-HHHHHHHHHHHHHHHTTC
T ss_pred CCCCcccHHHHHHHHHH--HHHHHh--c-----CeEEEEEe-cceeEcC-------CCCHH-HHHHHHHHHHHHHHHcCC
Confidence 55699999999876632 233333 6 77766543 5454321 24564 445556678888889999
Q ss_pred ccc
Q psy2393 102 KFD 104 (576)
Q Consensus 102 ~~d 104 (576)
+++
T Consensus 76 Dp~ 78 (341)
T 3sz3_A 76 DPK 78 (341)
T ss_dssp CTT
T ss_pred Chh
Confidence 987
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=86.80 E-value=0.32 Score=50.31 Aligned_cols=52 Identities=17% Similarity=0.059 Sum_probs=30.6
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCc--cccccCCC-ccCh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGK--KMSKSNKI-GISP 366 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~--KMSKS~gn-~i~~ 366 (576)
+-.+|.||.+ |..+---+....+.+.|. ++++.++.. +|. |||||.+| .|.+
T Consensus 290 ~VPvG~DQ~~-hlel~Rdia~rfn~~~p~-~~~~~~l~gLdG~~~KMSKS~~ns~I~l 345 (451)
T 3foc_A 290 LIASGIEQDP-YFRLARDLAPRMGHPKNA-YLLGKFLPGLQGSGTKMSASDPNSAIYL 345 (451)
T ss_dssp EEEECTTTHH-HHHHHHHHTTTTTSCCCE-EEEECCCCBTTBTTCCCCTTCGGGSCBT
T ss_pred eeeeecchHH-HHHHHHHHHHHhCCCCCe-eecCCcccCCCCCCCccCCCCCCCeeee
Confidence 4456999974 322211123334555444 455665555 664 99999987 5655
|
| >3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=86.43 E-value=1.2 Score=45.27 Aligned_cols=55 Identities=25% Similarity=0.114 Sum_probs=28.8
Q ss_pred EEEeeecCcchhHhHHH--H--HHHhcC--CCCCcEEeee--ccEE-e-CC-ccccccC---CCccChhH
Q psy2393 313 YHFIGKDIFYFHILFWP--A--ILKFSG--RKLPNNIFVH--GFMT-I-NG-KKMSKSN---KIGISPLY 368 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~--a--~l~~~~--~~~p~~~~~~--g~v~-~-~g-~KMSKS~---gn~i~~~d 368 (576)
+..+|.||...+ .+-- | +-...| +..|..++.- .++. + +| +|||||. +|.|.+.|
T Consensus 174 ~vPvG~DQ~~hl-eltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 174 LVPPGEDQKQHL-ELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD 242 (388)
T ss_dssp EECCCSSCHHHH-HHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC
T ss_pred EEEechhHHHHH-HHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC
Confidence 667899997432 2111 1 111122 2344444421 1222 2 44 6999999 89997754
|
| >2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} | Back alignment and structure |
|---|
Probab=86.29 E-value=1.8 Score=43.31 Aligned_cols=54 Identities=24% Similarity=0.113 Sum_probs=32.8
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe--CC-ccccccC-CCccChhH
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI--NG-KKMSKSN-KIGISPLY 368 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~--~g-~KMSKS~-gn~i~~~d 368 (576)
+..+|.||.. |..+-.-+....+...|. ++++.++.. +| +|||||. +|.|++.|
T Consensus 189 ~~~~G~DQ~~-~i~l~Rdia~r~~~~~p~-~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 189 ICQLGIDQRK-VNMLAIEYANDRGLKIPI-SLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp EECCBGGGHH-HHHHHHHHHHHTTCCCCE-EEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred EEEeccChHH-HHHHHHHHHHHhCCCCce-eecCccccCCCCcccccccCCCCCeEeecC
Confidence 6678999963 322211133445555553 455555555 46 6999999 68887754
|
| >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=85.98 E-value=0.36 Score=49.01 Aligned_cols=70 Identities=16% Similarity=0.059 Sum_probs=39.1
Q ss_pred CCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHH---H-HHHHHHHHHHHh
Q psy2393 22 YANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEF---I-NNISSNRKKYLD 97 (576)
Q Consensus 22 ~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~---~-~~~~~~~~~~l~ 97 (576)
-|||.+||||....+ -.+.+++ ..| +++.+..| |.|+.- -.+.|.+++++ + ..+...+.+++.
T Consensus 41 ~PTg~lHlG~yl~~l--~~~~~lQ-~~G-----~~~~~~ia-D~ha~~----~~~~g~~~e~i~~~~~~~~~~~~~~~~l 107 (375)
T 2cyc_A 41 EISGYIHLGTGLMAG--AKIADFQ-KAG-----IKTRVFLA-DWHSWI----NDKLGGDLEVIQEVALKYFKVGMEKSIE 107 (375)
T ss_dssp CCCSCCBHHHHHHHH--HHHHHHH-HTT-----CBCEEEEC-HHHHHH----TTGGGGCHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCCcCchHHHHHH--HHHHHHH-HCC-----CcEEEEec-CcEEEc----CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 555899999944322 2233444 468 88877664 333222 12223344433 2 333344448889
Q ss_pred hcCcccc
Q psy2393 98 GFYIKFD 104 (576)
Q Consensus 98 ~lgi~~d 104 (576)
.+|++++
T Consensus 108 a~G~dp~ 114 (375)
T 2cyc_A 108 VMGGDPK 114 (375)
T ss_dssp HTTCCGG
T ss_pred HhCCCcc
Confidence 9999876
|
| >3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* | Back alignment and structure |
|---|
Probab=85.92 E-value=1.1 Score=49.17 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=43.1
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHH-HHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADI-WVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dv-l~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
++.|++| --|||.||||| .++.-+ +.+++ ..| ++|.+..| |-|+.-. .+.+.++++ ++.+...
T Consensus 40 ~~~vy~G-~~PTg~lHLG~---~v~~~~~~~~lQ-~~G-----~~~~~lIa-D~ha~~~----d~~~~~~e~-i~~~~~~ 103 (690)
T 3p0j_A 40 LIRCYDG-FEPSGRMHIAQ---GIFKAVNVNKCT-AAG-----CEFVFWVA-DWFALMN----DKVGGELEK-IRIVGRY 103 (690)
T ss_dssp TEEEEEE-ECCCSCCBHHH---HHHHHHHHHHHH-HTT-----EEEEEEEC-CGGGGGG----CTTTTHHHH-HHHHHHH
T ss_pred CceEEee-ecCCCcchhHh---hHHHHHHHHHHH-HCC-----CcEEEEEe-eeEEEec----CCCcchHHH-HHHHHHH
Confidence 3444443 36668999999 333222 34444 468 98877665 5554321 012233333 3444456
Q ss_pred HHHHHhhcCcccc
Q psy2393 92 RKKYLDGFYIKFD 104 (576)
Q Consensus 92 ~~~~l~~lgi~~d 104 (576)
+.+++..+|++++
T Consensus 104 ~~~~~lA~GlDp~ 116 (690)
T 3p0j_A 104 LIEVWKAAGMDMD 116 (690)
T ss_dssp HHHHHHHTTCCGG
T ss_pred HHHHHHHcCCChH
Confidence 6777888999876
|
| >3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 | Back alignment and structure |
|---|
Probab=85.13 E-value=1.7 Score=43.43 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=43.1
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhh-cCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCM-QQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~-~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
+.+.+.- -|+|.+||||..+.+ ..+.++ .+ +++.+..+ |.|..-. ..+++ .+++....
T Consensus 16 ~~i~sG~--~PTG~lHLGh~vg~l-----~~~~~lQ~~-----~~~~~~ia-D~hA~t~-------~~~~~-~~~~~~~~ 74 (346)
T 3n9i_A 16 PIVFSGA--QPSGELTIGNYMGAL-----RQWVQMQDD-----YDCIYCIV-DLHAITA-------RQDPA-LLRKRTLD 74 (346)
T ss_dssp CEEEEEE--CSCSCCBHHHHHHTH-----HHHHTTTTT-----SEEEEEEC-HHHHTTS-------CCCHH-HHHHHHHH
T ss_pred CEEEECc--CCCCcccHHHHHHHH-----HHHHHHHhh-----CcEEEEEe-cceeecC-------CCCHH-HHHHHHHH
Confidence 3444443 556999999988765 223222 36 77766543 5454321 23453 44555667
Q ss_pred HHHHHhhcCcccc
Q psy2393 92 RKKYLDGFYIKFD 104 (576)
Q Consensus 92 ~~~~l~~lgi~~d 104 (576)
..+++...|++++
T Consensus 75 ~~~~~lA~GlDp~ 87 (346)
T 3n9i_A 75 TLALYLACGIDPK 87 (346)
T ss_dssp HHHHHHHHTCCTT
T ss_pred HHHHHHHcCCCcc
Confidence 7788888999887
|
| >3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=85.10 E-value=1.6 Score=43.52 Aligned_cols=67 Identities=24% Similarity=0.131 Sum_probs=35.1
Q ss_pred EEEeeecCcchhHhH-HHH--HHHhcC-----CCCCcEEee--eccEEe--CC-ccccccC---CCccChhHHhhcCCCh
Q psy2393 313 YHFIGKDIFYFHILF-WPA--ILKFSG-----RKLPNNIFV--HGFMTI--NG-KKMSKSN---KIGISPLYYLKIGMNP 376 (576)
Q Consensus 313 i~~~G~D~~~fh~~~-~~a--~l~~~~-----~~~p~~~~~--~g~v~~--~g-~KMSKS~---gn~i~~~dll~~g~g~ 376 (576)
+..+|.||...+-.- -.+ +-...| +..|..+++ +.++.. +| +|||||. +|.|.+.| ++
T Consensus 146 ~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D------~p 219 (341)
T 3sz3_A 146 QVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE------DP 219 (341)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC------CH
T ss_pred EEEeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC------CH
Confidence 667899997433110 111 111122 234544444 333433 46 6999999 78887654 33
Q ss_pred hHHHHHHHh
Q psy2393 377 EWLRYYIAS 385 (576)
Q Consensus 377 d~lR~~l~~ 385 (576)
+.+|==+.+
T Consensus 220 ~~i~kKI~~ 228 (341)
T 3sz3_A 220 KSIIKKINK 228 (341)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 455544443
|
| >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=84.06 E-value=1.4 Score=44.64 Aligned_cols=66 Identities=20% Similarity=0.059 Sum_probs=38.5
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCC--------CCCcEEeeeccEEe-CC------------------ccccccC-CCcc
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGR--------KLPNNIFVHGFMTI-NG------------------KKMSKSN-KIGI 364 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~--------~~p~~~~~~g~v~~-~g------------------~KMSKS~-gn~i 364 (576)
+..+|.||.. |..+=.-+....+. ..+..++++.++.. +| +|||||. +|.|
T Consensus 183 ~vp~G~DQ~~-~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I 261 (375)
T 2cyc_A 183 IAHAGMDQRK-AHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAV 261 (375)
T ss_dssp EEEEEGGGHH-HHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSC
T ss_pred eecccchHHH-HHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCee
Confidence 7788999963 32221112233343 10224455666655 66 8999998 7888
Q ss_pred ChhHHhhcCCChhHHHHHHHh
Q psy2393 365 SPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 365 ~~~dll~~g~g~d~lR~~l~~ 385 (576)
++.| +++.++=.+.+
T Consensus 262 ~L~d------~p~~i~~KI~~ 276 (375)
T 2cyc_A 262 FIHD------SPEEIRQKLRK 276 (375)
T ss_dssp BTTC------CHHHHHHHHHH
T ss_pred ccCC------CHHHHHHHHHH
Confidence 8765 24555555544
|
| >3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* | Back alignment and structure |
|---|
Probab=82.18 E-value=0.75 Score=50.50 Aligned_cols=54 Identities=28% Similarity=0.245 Sum_probs=31.6
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe--CC-ccccccCC-CccChh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI--NG-KKMSKSNK-IGISPL 367 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~--~g-~KMSKS~g-n~i~~~ 367 (576)
+..+|.||... ..+=.-+....+......++++.++.. +| +|||||.+ |.|++.
T Consensus 186 ~vpvG~DQ~~~-l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~ 243 (690)
T 3p0j_A 186 ICQLGLDQRKV-NMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFME 243 (690)
T ss_dssp EECCBGGGHHH-HHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTT
T ss_pred EEeccccHHHH-HHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeecc
Confidence 66789999743 222111333445432124556666654 67 49999997 678753
|
| >3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 | Back alignment and structure |
|---|
Probab=81.64 E-value=2 Score=42.89 Aligned_cols=55 Identities=25% Similarity=0.184 Sum_probs=28.9
Q ss_pred EEEeeecCcchhHhHHHHHHHh----cC--CCCCcEEee-e-ccE-Ee-CC-ccccccCC---CccChhH
Q psy2393 313 YHFIGKDIFYFHILFWPAILKF----SG--RKLPNNIFV-H-GFM-TI-NG-KKMSKSNK---IGISPLY 368 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~----~~--~~~p~~~~~-~-g~v-~~-~g-~KMSKS~g---n~i~~~d 368 (576)
+..+|.||...+ .+---+... .| +..|..++. + .++ -+ +| +|||||.+ |.|++.|
T Consensus 155 ~vpvG~DQ~~hl-eltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 223 (346)
T 3n9i_A 155 QVPVGEDQKQHL-ELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE 223 (346)
T ss_dssp EECCCGGGHHHH-HHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS
T ss_pred EEEeccchHHHH-HHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCC
Confidence 667899997433 211111111 22 344554443 1 222 23 66 59999987 6787644
|
| >1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A | Back alignment and structure |
|---|
Probab=80.84 E-value=1.3 Score=40.35 Aligned_cols=53 Identities=6% Similarity=0.068 Sum_probs=35.8
Q ss_pred ChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCC
Q psy2393 111 SIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAK 164 (576)
Q Consensus 111 ~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~ 164 (576)
..+|....+.++.+|. ......+.....|.|+.|+-......+-..||.|+.+
T Consensus 128 E~ehe~~~~~~l~~l~-~~~~~~~~~~~~~~C~~CG~~~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 128 EEFHEKRFLDFARNIK-EGRVFLREQATKWRCRNCGYVHEGTGAPELCPACAHP 180 (191)
T ss_dssp HHHHHHHHHHHHHHHH-HTCSSEEEEEEEEEETTTCCEEEEEECCSBCTTTCCB
T ss_pred HHHHHHHHHHHHHhhh-cccccccCCCceEEECCCCCEeeCCCCCCCCCCCcCC
Confidence 5578888999999997 5444444556688899988554322333478877765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 576 | ||||
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 3e-64 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 2e-47 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 2e-40 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 5e-31 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 2e-29 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 1e-26 | |
| d1pfva1 | 162 | a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (Me | 2e-26 | |
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 2e-20 | |
| d1pfva3 | 35 | g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (Me | 2e-15 | |
| d1rqga3 | 35 | g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (Me | 7e-15 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 1e-14 | |
| d1rqga1 | 210 | a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (Me | 1e-12 | |
| d2d5ba1 | 152 | a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (Me | 1e-09 | |
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 4e-08 |
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 212 bits (540), Expect = 3e-64
Identities = 170/401 (42%), Positives = 237/401 (59%), Gaps = 52/401 (12%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
++I VT ALPYANG +H+GH++E+IQAD+WVR+Q M+ V FICADDAHG IM
Sbjct: 2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHE-----VNFICADDAHGTPIM 56
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
+ A++ G+TP++ I +S + GF I +DN++ST S EN L + IY L +
Sbjct: 57 LKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLK-ENGF 115
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
I N+ I+Q +DP K +FLPDR++ +S
Sbjct: 116 IKNRTISQLYDPEKGMFLPDRFV-----------------------------------VS 140
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G P+++ S+HFFF L + L+ W LQ ++ NK++EW E + WDISR
Sbjct: 141 GATPVMRDSEHFFFDLP--SFSEMLQAW-TRSGALQEQVANKMQEWFESGLQ--QWDISR 195
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTE 311
DAPYFG +IPN KYFYVWLDAPIGY+ S KN +K G ++E D E
Sbjct: 196 DAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKD-----STAE 250
Query: 312 QYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLK 371
YHFIGKDI YFH LFWPA+L+ S + P+N+FVHG++T+NG KMSKS I +L
Sbjct: 251 LYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN 310
Query: 372 IGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDLIGK 412
+ + LRYY +KL+++I+DID N + F+ VN+D++ K
Sbjct: 311 H-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNK 350
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 167 bits (424), Expect = 2e-47
Identities = 105/409 (25%), Positives = 172/409 (42%), Gaps = 62/409 (15%)
Query: 13 RIFVTTALPYANGELHIGHIM-EYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
R VT+ALPYANG +H GH+ Y+ ADI+VR+ ++ ++ V FIC D HG I
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGED-----VVFICGTDEHGTPIS 57
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
A K G +P+E ++ K I FD + T+ + L Q+ + Y
Sbjct: 58 FRALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGH- 116
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
++ K Q + +FLPDR+ +
Sbjct: 117 LVKKVTKQAYCEHDKMFLPDRFA-----------------------------------IC 141
Query: 192 GTKPIIKSSKHFFFKLSD-KRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250
G + S H++ K+ D + + ++ +++ I+E LE+ D +
Sbjct: 142 GRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWG 201
Query: 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNT 310
P + K YVW +APIGY++ F++ G ++ + + T
Sbjct: 202 IPVPLDEEDMKG---KVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNID----GQT 254
Query: 311 EQYHFIGKDIFYFHILFWPAILKFSGR----------KLPNNIFVHGFMTINGKKMSKSN 360
HFIGKD FH +FWPA L G+ LP +I + ++T+ GKK S S
Sbjct: 255 RVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSR 314
Query: 361 KIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDL 409
I +L + ++LRYY+ + + + D DF+ F +N +L
Sbjct: 315 NWAIWVHEFLDV-FPADYLRYYLTT-IMPETRDSDFSFSDFKVRINEEL 361
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 148 bits (373), Expect = 2e-40
Identities = 85/398 (21%), Positives = 152/398 (38%), Gaps = 53/398 (13%)
Query: 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIM 71
+ +VTT + Y N E H+GH + AD R+ + +F+ D HG +
Sbjct: 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYR-----TFFLTGTDEHGETVY 57
Query: 72 IAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKL 131
AA+ AG PK F++ +S K+ D I +D++ T + +VQ + +Y
Sbjct: 58 RAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVY----- 112
Query: 132 IINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILS 191
E + G +C C YT +L+ +
Sbjct: 113 -------------------------EAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIH 147
Query: 192 GTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISR 251
G + ++FF++ R D N++ L + +
Sbjct: 148 GRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPK 207
Query: 252 DAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTE 311
+GI +P +VW DA + Y+++L E +
Sbjct: 208 SRVPWGIPLPWDENHVTFVWFDALLNYVSALDY---------------PEGEAYRTFWPH 252
Query: 312 QYHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFM-TINGKKMSKSNKIGISPLYYL 370
+H IGKDI H +FWP +LK +G + ++ V GF+ +G+KMSK+ + P L
Sbjct: 253 AWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALL 312
Query: 371 KIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSD 408
+ + LRYY+ ++ +D + ++ + +D
Sbjct: 313 E-KYGRDALRYYLLREIPYG-QDTPVSEEALRTRYEAD 348
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 123 bits (308), Expect = 5e-31
Identities = 55/412 (13%), Positives = 118/412 (28%), Gaps = 44/412 (10%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+ P G LH+GH ++ D +R++ M+ ++ D G A +
Sbjct: 37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFE-----AVWLPGTDHAGIATQVVV 91
Query: 75 EKAGMTPKEFINNISSNRKKYLD------------------GFYIKFDNWYSTDSIENID 116
E+ + + +++ + G + T +
Sbjct: 92 ERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSR 151
Query: 117 LVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSS 176
V+ + Y++ ++ + P L D C+ ++
Sbjct: 152 AVRYAFSRYYHEGLAYRAPRL-VNWCPRCETTLSDLE----VETCSRCGTPIEYAIFPQW 206
Query: 177 IYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKE 236
L I + + D ++ ++ W I + ++I
Sbjct: 207 WLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMD--WLENVKDWNISRQL---WWGHQIPA 261
Query: 237 WLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYN 296
W +D + + D + +S G ++
Sbjct: 262 WYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETE 321
Query: 297 ELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAI-LKFSGRKLPNNIFVHGF-MTINGK 354
+L+ F G DI + + F G + + +HG + G+
Sbjct: 322 DLKAF-------YPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQ 374
Query: 355 KMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVN 406
KMSKS I PL ++ + LR+ + +DI + + N
Sbjct: 375 KMSKSKGNVIDPLEMVE-RYGADALRFALIYLATGG-QDIRLDLRWLEMARN 424
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 119 bits (298), Expect = 2e-29
Identities = 62/436 (14%), Positives = 113/436 (25%), Gaps = 43/436 (9%)
Query: 2 KKHDSEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFIC 61
+K K R V P ANG H+GH D++ R++ M+
Sbjct: 28 QKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYY-----APRRA 82
Query: 62 ADDAHGAAIMIAAEKAGMTPKE-----------------FINNISSNRKKYLDGFYIKFD 104
D HG + + EK + + + + + D
Sbjct: 83 GWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVD 142
Query: 105 NW--YSTDSIENIDLVQKIYDTLYNK--AKLIINKKINQFFDPIKNIFLPDRYIKGECPI 160
Y+T I+ + L+++ C
Sbjct: 143 LEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWR 202
Query: 161 CNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFF--------FKLSDKRC 212
C+ Y + + P + + LS R
Sbjct: 203 CSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRY 262
Query: 213 IDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPY-FGIKIPNTLEKYFYVW 271
+ + E + +E + K PY +++
Sbjct: 263 WGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRV 322
Query: 272 LDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAI 331
+ S F ++ E+ P I + +F+ L +
Sbjct: 323 PYVIDVWYDSGAMPFASLHYPFEHEEVFRESF----PADFIAEGIDQTRGWFNSLHQLGV 378
Query: 332 LKFSGRKLPNNIFVHGF-MTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNK 390
+ F G N+ HG + G+KMSKS + P ++ + LR+YI +
Sbjct: 379 MLF-GSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK-FGADALRWYIYVSAPPE 436
Query: 391 IEDIDFNSQSFISCVN 406
D F V
Sbjct: 437 -ADRRFGPNLVRETVR 451
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 110 bits (275), Expect = 1e-26
Identities = 75/434 (17%), Positives = 134/434 (30%), Gaps = 48/434 (11%)
Query: 2 KKHDSEFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFIC 61
K + K + PYANG LH+GH + I D VR++ MQ ++
Sbjct: 38 HKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFY-----APYVP 92
Query: 62 ADDAHGAAIMIAAEKAG-----MTPKEFINNISSNRKKYLDGFYIKF---------DNWY 107
D HG I A K G M+ EF + ++ F ++ Y
Sbjct: 93 GWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPY 152
Query: 108 STDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY 167
T E +I+ + +K + KK ++ P L + I+ K
Sbjct: 153 ITLKPEYEAAQIRIFGEMADKGLIYKGKKP-VYWSPSSESSLAEAEIEYPHDWRTKKPVI 211
Query: 168 GDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKR--CIDFLRKWAIH--- 222
+ + + +I + + + + D+ I R W +
Sbjct: 212 FRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPV 271
Query: 223 ------DKRLQPEIVNKIKEWLEKDNKFNDWDI-SRDAPYFGIKIPNTLEKYFYVWLDAP 275
+ + E VN + + + ++ ++D G P + F D
Sbjct: 272 FYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIM 331
Query: 276 IGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFS 335
+ S + S + Y + +
Sbjct: 332 DVWFDSGSSHRGVLE-----------TRPELSFPADMYLEGSDQYRGWFNSSITTSVATR 380
Query: 336 GRKLPNNIFVHGF-MTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDI 394
G + HGF M GKKMSKS I P +K + R +++S + + D+
Sbjct: 381 GVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVK-QKGADIARLWVSS--TDYLADV 437
Query: 395 DFNSQSFISCVNSD 408
S + + D
Sbjct: 438 RI-SDEILKQTSDD 450
|
| >d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 103 bits (257), Expect = 2e-26
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 4/158 (2%)
Query: 414 INIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQ 473
+N+ASR++ FI K F G L + + I + +E+R F K + ++
Sbjct: 2 VNLASRNAGFINKRFDGVL--ASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMAL 59
Query: 474 TNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLN 533
+ N + D+ PW +AK L I S + FR+L YLKP+LP L + E FLN
Sbjct: 60 ADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN 119
Query: 534 ISPLQWINIFTPLTQNHKINKYRHLMTRVDKNIVDNLL 571
L W I PL HK+N ++ L R+D V+ L+
Sbjct: 120 T-ELTWDGIQQPLL-GHKVNPFKALYNRIDMRQVEALV 155
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 92.0 bits (227), Expect = 2e-20
Identities = 50/293 (17%), Positives = 85/293 (29%), Gaps = 42/293 (14%)
Query: 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAA 74
+V PY +G+LH+GH+ Y D+ RF+ MQ V DA G AA
Sbjct: 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYE-----VLHPMGWDAFGLPAENAA 90
Query: 75 EKAGMTPKEFINNISSNRKKYLD--GFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLI 132
K G+ PK++ K+ L G +D +T E Q I+ ++ K
Sbjct: 91 LKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEK---- 146
Query: 133 INKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSG 192
+ ++C C ++ +++
Sbjct: 147 --------------------------GLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHE 180
Query: 193 TKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRD 252
P+ K ++ I + + D + DW ISR
Sbjct: 181 DTPVEKRELEQWY-----LRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRLRDWLISRQ 235
Query: 253 APYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI 305
+ E V + + + K + L EF
Sbjct: 236 RYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFY 288
|
| >d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} Length = 35 | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Escherichia coli [TaxId: 562]
Score = 68.2 bits (167), Expect = 2e-15
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 154 IKGECPICNAKDQYGDFCECCSSIYTPTKLINPYS 188
+KG CP C + DQYGD CE C + Y+PT+LI P S
Sbjct: 1 VKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKS 35
|
| >d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} Length = 35 | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Pyrococcus abyssi [TaxId: 29292]
Score = 66.2 bits (162), Expect = 7e-15
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 154 IKGECPICNAKDQYGDFCECCSSIYTPTKLINP 186
+ G CP C A+DQ GD CE C TP LINP
Sbjct: 1 VIGTCPYCGAEDQKGDQCEVCGRPLTPEILINP 33
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 72.9 bits (177), Expect = 1e-14
Identities = 39/393 (9%), Positives = 72/393 (18%), Gaps = 92/393 (23%)
Query: 7 EFKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAH 66
+ + +V + +G +H+G+ E A I + V I D +
Sbjct: 12 RERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYE-----VRHIHMWDDY 66
Query: 67 GAAIMIAAEKAGMTPKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLY 126
+ IS +
Sbjct: 67 DRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMR------------------- 107
Query: 127 NKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINP 186
+ I + Y ++ E
Sbjct: 108 ----------KFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKR------------ 145
Query: 187 YSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFND 246
L+ R I + +E +
Sbjct: 146 --------------DKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGW 191
Query: 247 WDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFIS 306
+ + W +
Sbjct: 192 KVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSH------------------------- 226
Query: 307 SPNTEQYHFIGKDIFYFHILFWPAILKFSG--RKLPNNIFVHGFMTINGK--KMSKSNKI 362
+ GKD + K ++ F+ I G+ KMS S
Sbjct: 227 --FGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGN 284
Query: 363 GISPLYYLKIGMNPEWLRYYIASKLNNKIEDID 395
I + + P +R+ A NK ID
Sbjct: 285 VILLSDLYE-VLEPGLVRFIYARHRPNKEIKID 316
|
| >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 210 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 64.9 bits (157), Expect = 1e-12
Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 5/165 (3%)
Query: 412 KYINIASRSSSFIEKYFKGYL--NMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYI 469
N R+ +F+ +YF G + + + + L ++ + + N F L
Sbjct: 3 NLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKR 62
Query: 470 VIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVE 529
V+ +F N +FD +PWK + + L+ + L I L+P LP+ ++ +
Sbjct: 63 VMSLASFGNRYFDHKQPWK--TAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIW 120
Query: 530 TFLNISPLQWINIFTPLTQNHKINKYRHLMTRVDKNIVDNLLKNK 574
LN+ ++ F L HK+ K L +V + + + N
Sbjct: 121 HLLNLDEVKRWE-FRELPAGHKVRKPEILFKKVTDDQIIYFILNY 164
|
| >d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 152 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 54.8 bits (131), Expect = 1e-09
Identities = 25/156 (16%), Positives = 59/156 (37%), Gaps = 8/156 (5%)
Query: 409 LIGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLY 468
L N+ R+ + + ++ +G + L++ ++ ++ F+ L
Sbjct: 1 LADDLGNLVQRTRAMLFRFAEGRIPEP---VAGEELAEGTGLAGRLRPLVRELKFHVALE 57
Query: 469 IVIEQTNFINIFFDQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSV 528
+ +N + ++ KPW+L K E+ + R++E RI +I L P +P+ +
Sbjct: 58 EAMAYVKALNRYINEKKPWELFKKE--PEEARAVLYRVVEGLRIASILLTPAMPDKMAEL 115
Query: 529 ETFLNISP---LQWINIFTPLTQNHKINKYRHLMTR 561
L + L+ + + L +
Sbjct: 116 RRALGLKEEVRLEEAERWGLAEPRPIPEEAPVLFPK 151
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 52.6 bits (125), Expect = 4e-08
Identities = 47/381 (12%), Positives = 92/381 (24%), Gaps = 103/381 (27%)
Query: 21 PYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMT 80
HIGH ++ D+ R+ + ++ I+ A + G +
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYK-----LKYVRNITDIDDKIIKRANENGES 84
Query: 81 PKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQF 140
++ + + K D I + + +A I + I
Sbjct: 85 FVAMVDRMIAEMHKDFDALNI-------------------LRPDMEPRATHHIAEIIELT 125
Query: 141 FDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSS 200
I YG +
Sbjct: 126 EQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQ--------------------A 165
Query: 201 KHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKI 260
+ DKR W K + +G
Sbjct: 166 GARVDVVDDKRNPMDFVLW-----------------------KMSKEGEPSWPSPWGAGR 202
Query: 261 PNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDI 320
P + + L N F+ H G D+
Sbjct: 203 PGWHIECSAMNCK-------QLGNHFD-------------------------IHGGGSDL 230
Query: 321 FYFHILFWPAILKFSGRKLPNNIFVH-GFMTINGKKMSKSNKIGISPLYYLKIGMNPEWL 379
+ H A + N ++H G + ++ +KMSKS + LK + E +
Sbjct: 231 MFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLK-YYDAETV 289
Query: 380 RYYIASKLNNKIEDIDFNSQS 400
RY++ S ++++ ++
Sbjct: 290 RYFLMSGHYRS--QLNYSEEN 308
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 576 | |||
| d1pfva2 | 350 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 100.0 | |
| d1ffya3 | 450 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 100.0 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 100.0 | |
| d1ivsa4 | 425 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 100.0 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 100.0 | |
| d2d5ba2 | 348 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 100.0 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 100.0 | |
| d1li5a2 | 315 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 100.0 | |
| d1irxa2 | 317 | Class I lysyl-tRNA synthetase {Archaeon Pyrococcus | 99.94 | |
| d1pfva1 | 162 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 99.93 | |
| d1rqga1 | 210 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 99.92 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 99.9 | |
| d1f7ua2 | 348 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 99.89 | |
| d2d5ba1 | 152 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 99.85 | |
| d1j09a2 | 305 | Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph | 99.66 | |
| d1ilea1 | 180 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 99.46 | |
| d1gtra2 | 331 | Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co | 99.42 | |
| d1nzja_ | 286 | Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c | 99.4 | |
| d1ivsa2 | 218 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.37 | |
| d1h3na1 | 128 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 99.37 | |
| d1ffya1 | 273 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 99.35 | |
| d1rqga3 | 35 | Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro | 99.09 | |
| d1pfva3 | 35 | Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch | 98.96 | |
| d1iq0a1 | 126 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 98.13 | |
| d1f7ua1 | 124 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 97.92 | |
| d1j1ua_ | 306 | Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc | 97.43 | |
| d1h3fa1 | 343 | Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi | 97.41 | |
| d1jila_ | 323 | Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au | 94.78 | |
| d1r6ta2 | 386 | Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo | 92.12 | |
| d1n3la_ | 339 | Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie | 91.55 | |
| d1li5a1 | 87 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 88.42 | |
| d2ts1a_ | 319 | Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth | 87.78 |
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.1e-65 Score=523.87 Aligned_cols=348 Identities=49% Similarity=0.942 Sum_probs=314.0
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
.|+|+|++|||||||+|||||+|+++++|+++||+|++| ++|.+++|+||||+||+.+|+++|.+++++++++..
T Consensus 1 ~~~~~i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G-----~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~ 75 (350)
T d1pfva2 1 AKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRG-----HEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQ 75 (350)
T ss_dssp CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCCCCccccccHHHHHHHHHHHHHHhcC-----CceEecCccCCccHHHHHHHHHcCCCHHHHHHhHHH
Confidence 378999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 91 NRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 91 ~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
.+.++++.|+|+++.++.|.++.+.+.+++++.+|. ++|++|+++..++||+.|+++|+|+++
T Consensus 76 ~~~~~~~~l~i~~~~~~~t~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~d~~~~~~l~d~~~---------------- 138 (350)
T d1pfva2 76 EHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLK-ENGFIKNRTISQLYDPEKGMFLPDRFV---------------- 138 (350)
T ss_dssp HHHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEECCGGGT----------------
T ss_pred HHHHHHHHcCCCcccCCCcCCcccchHHHHHHHHHh-hccceeeccceEEEeCCCCeEcCCcee----------------
Confidence 999999999999999999999999999999999999 999999999999999999999997543
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~is 250 (576)
.||..++.+.++||||+| +.+++.+.++ .+...++++.++....++. .+..+|++|
T Consensus 139 -------------------~~g~~~~~~~~~~~f~~l--~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~s 194 (350)
T d1pfva2 139 -------------------VSGATPVMRDSEHFFFDL--PSFSEMLQAW-TRSGALQEQVANKMQEWFE--SGLQQWDIS 194 (350)
T ss_dssp -------------------TTCCCCEEEEEEEEEECG--GGGHHHHHHH-HTTSCSCHHHHHHHHHHHH--HCCCCEECE
T ss_pred -------------------ccCCCccceecchheeeh--HHHHHHHHHH-hhcCCCchhhHHHHHHHhh--ccCCccccc
Confidence 456678889999999999 9999999999 8888899998888888887 789999999
Q ss_pred cCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccc-cCCCcceEEEeeecCcchhHhHHH
Q psy2393 251 RDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI-SSPNTEQYHFIGKDIFYFHILFWP 329 (576)
Q Consensus 251 R~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w-~~~~~~~i~~~G~D~~~fh~~~~~ 329 (576)
|++.+||+++|..++.++++|++++..+++....+....+.. ..++.+| .+....++|++|+|++++|+.+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~h~~G~D~~~~h~~~~~ 268 (350)
T d1pfva2 195 RDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDS------VSFDEYWKKDSTAELYHFIGKDIVYFHSLFWP 268 (350)
T ss_dssp EESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCS------SHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHH
T ss_pred cccccCCccccCCCCcccccccccccchhhhhhccccccccc------hhhhhccccCCCcceeeccchhhHHHHHhhHH
Confidence 999788999999999999999999888887665554443321 3344444 334456789999999999999999
Q ss_pred HHHHhcCCCCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhhhHHH
Q psy2393 330 AILKFSGRKLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCVNSDL 409 (576)
Q Consensus 330 a~l~~~~~~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~~~~~ 409 (576)
+++++.+...+.++++||||+++|+|||||+||+|+++|++++ ||+|+|||||++..+.+.+|++||++.+.+..|+++
T Consensus 269 ~~~~a~~~~~~~~~~~~g~l~~~G~KMSKS~GN~i~~~dll~~-~g~D~lR~~l~s~~~~~~~d~dfs~~~~~~~~N~~~ 347 (350)
T d1pfva2 269 AMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADI 347 (350)
T ss_dssp HHHHHTTBCCCSEEEEECCEEETTBSCCTTTTCCCBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHC
T ss_pred HHhhhcCCCccceEEecccEEECCeEccCcCCCCCCHHHHHHH-CCHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHc
Confidence 9999998888899999999999999999999999999999999 999999999999777777889999999998888776
Q ss_pred HH
Q psy2393 410 IG 411 (576)
Q Consensus 410 ~~ 411 (576)
++
T Consensus 348 ~n 349 (350)
T d1pfva2 348 VN 349 (350)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.8e-62 Score=520.27 Aligned_cols=333 Identities=22% Similarity=0.279 Sum_probs=273.2
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCH------
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTP------ 81 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~------ 81 (576)
++++++|+|++|||||||.|||||+++++++||++||+||+| ++|++++|||+||+||+.+|++.+.++
T Consensus 44 ~~~~~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G-----~~V~~~~G~D~~G~pie~~~~~~~~~~~~~~~~ 118 (450)
T d1ffya3 44 NKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQG-----FYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTA 118 (450)
T ss_dssp TTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTT-----CBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHH
T ss_pred cCCCCcEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcC-----CccccccccccCCcHHHHHHHhhCCccccccHH
Confidence 356678999999999999999999999999999999999999 999999999999999999999987653
Q ss_pred ------HHHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccc
Q psy2393 82 ------KEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRY 153 (576)
Q Consensus 82 ------~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~ 153 (576)
.++++.+.+.+++++++||+..| ..+.|+++.|.+.++++|.+|+ ++|+||++..+++|||.|++++++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~f~~l~-~~G~iy~~~~~v~~~p~~~~~~~~~e 197 (450)
T d1ffya3 119 EFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMA-DKGLIYKGKKPVYWSPSSESSLAEAE 197 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEECCGGG
T ss_pred HHhhhcchhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHH-HcCCeeccccccccccccCccccccc
Confidence 44578889999999999999665 7789999999999999999999 99999999999999999998888765
Q ss_pred eeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCC-ChhHHH
Q psy2393 154 IKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRL-QPEIVN 232 (576)
Q Consensus 154 v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~-~~~~~~ 232 (576)
++ +|.|+||+++++.+.++|||+++ ..+++.+.+. .....+ |...+.
T Consensus 198 ~~-----------------------------~~~~~r~~~~~~~~~~~qwf~~~--~~~~~~~~~~-~~~~~~~~~~~~~ 245 (450)
T d1ffya3 198 IE-----------------------------YPHDWRTKKPVIFRATPQWFASI--SKVRQDILDA-IENTNFKVNWGKT 245 (450)
T ss_dssp EE-----------------------------EEEETTTCCBCEEEEEEEEEECH--HHHHHHHHHH-HHTSEESSHHHHH
T ss_pred cc-----------------------------ccccccccCCceeeccccceecc--ccccccchhh-cccccccccccce
Confidence 54 47789999999999999999999 9999999999 766654 555678
Q ss_pred HHHHHHhhcCCCCCcccccCCCCCCeecCCC---CCc-------------------------------------------
Q psy2393 233 KIKEWLEKDNKFNDWDISRDAPYFGIKIPNT---LEK------------------------------------------- 266 (576)
Q Consensus 233 ~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~---~~~------------------------------------------- 266 (576)
++..|++ ++.|||||||+ +||+|+|.. .+.
T Consensus 246 ~~~~~~~---~~~Dw~iSRqr-~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (450)
T d1ffya3 246 RIYNMVR---DRGEWVISRQR-VWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPN 321 (450)
T ss_dssp HHHHHHH---HCCCEECEESC-SSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTT
T ss_pred eeecccc---Cccchheeeec-ccccCcceeecCCCCEecchhhhHHHHHhhhhcCccccccccccccccccccccCCCC
Confidence 8999998 89999999999 999999951 111
Q ss_pred --------EEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchh-HhHHHHHHHhcCC
Q psy2393 267 --------YFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFH-ILFWPAILKFSGR 337 (576)
Q Consensus 267 --------~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh-~~~~~a~l~~~~~ 337 (576)
++++||++...+..... .....+||.+ ++++|+||+++| +.++...+...|.
T Consensus 322 ~~~~~~~dvld~wfds~~~~~~~~~---------------~~~~~~~P~d----~~~~G~Di~r~w~~~~~~~~~~~~~~ 382 (450)
T d1ffya3 322 GTFTKETDIMDVWFDSGSSHRGVLE---------------TRPELSFPAD----MYLEGSDQYRGWFNSSITTSVATRGV 382 (450)
T ss_dssp SCCEECCCEECHHHHHHTHHHHTTT---------------TSTTCCSSBS----EEEEEGGGGTTHHHHHHHHHHHHHSS
T ss_pred Ccceeeeeeeccccccccccccccc---------------ccccccCCCc----ccccCcchhhHHHHHHHHHHHHhcCC
Confidence 11122221111111000 1112223332 899999999764 3444444555677
Q ss_pred CCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhh
Q psy2393 338 KLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISC 404 (576)
Q Consensus 338 ~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~ 404 (576)
.+++.+++||||++ +|+|||||+||+|+|.|++++ ||+|+||||++++ ....|++||++.+.+.
T Consensus 383 ~Pfk~v~~hG~vld~~G~KMSKS~GN~I~p~dii~~-yGaDalR~~l~s~--~~~~D~~fs~~~l~~~ 447 (450)
T d1ffya3 383 SPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQ-KGADIARLWVSST--DYLADVRISDEILKQT 447 (450)
T ss_dssp CSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHH-TCHHHHHHHHHTS--CTTSCEECCHHHHHHH
T ss_pred CCcceEEEcceEECCCCCCCCCCCCCCcCHHHHHHH-hCcHHHHHHHHcC--CCCCCcCcCHHHHHHh
Confidence 77799999999988 899999999999999999999 9999999999975 3458999998876654
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=4.5e-60 Score=490.38 Aligned_cols=342 Identities=32% Similarity=0.624 Sum_probs=302.5
Q ss_pred CeEEEEcCCCCCCCcccchHhh-hHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIM-EYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~-~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
.+|+|+.|||||||+|||||++ .+|.+|+++||+|++| ++|.+++|+|+||+||+.+|++.|.+++++++.+..
T Consensus 2 ~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G-----~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~ 76 (361)
T d1rqga2 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKG-----EDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHE 76 (361)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred ceEEEecCCCCCCCCcccccccccHHHHHHHHHHHHhcC-----CceEecCccCcccHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6899999999999999999988 5899999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 91 NRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 91 ~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
.+.+++..+++.++.+..|.+..+...++.++..+. ++|.+|++...++||+.|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------------- 135 (361)
T d1rqga2 77 QIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAY-ENGHLVKKVTKQAYCEHDKMFLP-------------------- 135 (361)
T ss_dssp HHHHHHHHHTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEBTTTTBCCC--------------------
T ss_pred hhcccccccccccccccccccchhhhhhhhhhhhcc-ccCceeeeeeeeecccccceecc--------------------
Confidence 999999999999999999999999999999999999 99999999999999887776544
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDIS 250 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~is 250 (576)
+.|++||.+++.+...|||+++ +.+++.+.+. .....+.|........++. .++.+|+||
T Consensus 136 ---------------~~~~~~g~~~~~~~~~~~f~~~--~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~--~~l~d~~is 195 (361)
T d1rqga2 136 ---------------DRFAICGRPISFRDSAHYYIKM--QDFAERLKRW-IEKQPWKPNVKNMVLSWIE--EGLEERAIT 195 (361)
T ss_dssp ---------------GGGTTTCCBCEEEEEEEEEECG--GGTHHHHHHH-HHSSCCCHHHHHHHHHHHT--TCCCCEECE
T ss_pred ---------------cccccCCCcccccccceEEEec--chhhhhhhhc-ccccccccchhhhhhhccc--ccccccccc
Confidence 6788999999999999999999 9999999999 8888888888888888887 799999999
Q ss_pred cCCCCCCeecCCC----CCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccc--cCCCcceEEEeeecCcchh
Q psy2393 251 RDAPYFGIKIPNT----LEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFI--SSPNTEQYHFIGKDIFYFH 324 (576)
Q Consensus 251 R~~~~WG~~iP~~----~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w--~~~~~~~i~~~G~D~~~fh 324 (576)
|++ +||+++|.. .++++++|+++...+.+.........|.. .++..++ ....+..+|++|.|+.++|
T Consensus 196 r~~-~wg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~g~d~~~~~ 268 (361)
T d1rqga2 196 RDL-NWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKP------NEWKKYWLNIDGQTRVIHFIGKDNIPFH 268 (361)
T ss_dssp ECC-SSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCT------TTTHHHHBCSSCCEEEEEEEEGGGHHHH
T ss_pred ccc-cccccCccccccCCCeEEEeecccccccccccccCcccCCch------hHHHHhhhhccCCcceEEeccccccccc
Confidence 999 999999973 46789999999888777665555554421 2222222 2234556999999999999
Q ss_pred HhHHHHHHHhcCC----------CCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCc
Q psy2393 325 ILFWPAILKFSGR----------KLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDI 394 (576)
Q Consensus 325 ~~~~~a~l~~~~~----------~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~ 394 (576)
+..+++++.+.+. ++|+.+++||||+++|+|||||+||+|+|+|++++ ||+|+||||+++.+|.+ +|+
T Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~G~KMSKSlGN~I~~~d~i~~-yg~D~lR~~l~~~~p~~-~d~ 346 (361)
T d1rqga2 269 AIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDV-FPADYLRYYLTTIMPET-RDS 346 (361)
T ss_dssp HTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTT-SCHHHHHHHHHHTCCSS-SCE
T ss_pred hhhHHHHHHHhhccccccccccCCCCCEEEEeeeEEeCCEecCCCCCCCCCHHHHHHH-cCcHHHHHHHHhhCCCC-CCC
Confidence 9999999888752 56789999999999999999999999999999999 99999999999987655 789
Q ss_pred ccchhhHhhhhhHH
Q psy2393 395 DFNSQSFISCVNSD 408 (576)
Q Consensus 395 ~fs~~~~~~~~~~~ 408 (576)
+||++.+.+++|++
T Consensus 347 dfs~~~~~~~~n~~ 360 (361)
T d1rqga2 347 DFSFSDFKVRINEE 360 (361)
T ss_dssp EECHHHHHHHHHHT
T ss_pred CCCHHHHHHHhccC
Confidence 99999998887765
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.9e-60 Score=500.06 Aligned_cols=336 Identities=19% Similarity=0.258 Sum_probs=285.8
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHc----CCCH--
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKA----GMTP-- 81 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~----g~~~-- 81 (576)
++++++|+|++|||||||+|||||+++++++||++||+|++| ++|.|++|+|+||++|+.+|++. |..+
T Consensus 30 ~~~~~~f~i~~~pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G-----~~V~~v~g~D~hG~~i~~~aek~~~~~~~~~~~ 104 (425)
T d1ivsa4 30 KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRG-----FEAVWLPGTDHAGIATQVVVERLLLKEGKTRHD 104 (425)
T ss_dssp TCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTT-----SEEEEECEEBCCTHHHHHHHHHHHHTTTCCGGG
T ss_pred CCCCCcEEEEcCCCCCCCCchhhHHHHHHHHHHHHHHHHhCC-----CceeecCcccCCcchHHHHHHHhhcccCCChHH
Confidence 456789999999999999999999999999999999999999 99999999999999999999874 3332
Q ss_pred ----------HHHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccc
Q psy2393 82 ----------KEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFL 149 (576)
Q Consensus 82 ----------~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l 149 (576)
..++.++.+.+.++|++||+..| ..++|+++.|.+.++++|.+|. ++|++|++...++||+.|+++|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~~~~~~~~l~-~~G~iy~~~~~~~~c~~~~~~l 183 (425)
T d1ivsa4 105 LGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYY-HEGLAYRAPRLVNWCPRCETTL 183 (425)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHH-TTSSEEEECCEEEEETTTTEEC
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcchhhcccchhhhhhhHHHHhhhh-ccCcccccceeecccccccccc
Confidence 33567788999999999999665 6778999999999999999999 9999999999999999999999
Q ss_pred cccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC---CC
Q psy2393 150 PDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK---RL 226 (576)
Q Consensus 150 ~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~---~~ 226 (576)
++.++.+ |++|++..+.+..+|||+++ ++..+.+..+ .+.. ..
T Consensus 184 ~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~ 229 (425)
T d1ivsa4 184 SDLEVET-------------------------------CSRCGTPIEYAIFPQWWLRM--RPLAEEVLKG-LRRGDIAFV 229 (425)
T ss_dssp CGGGEEE-------------------------------ETTTCSBCEEEECCEEEECH--HHHHHHHHHH-HHHTCCEES
T ss_pred ccccccc-------------------------------ccccCcccccccccchhhcc--chhhccchhh-hhcCCccee
Confidence 9877654 44567788889999999999 9998888887 5432 35
Q ss_pred ChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCC---------------------------------CCcEEEEEee
Q psy2393 227 QPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNT---------------------------------LEKYFYVWLD 273 (576)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~---------------------------------~~~~~~vw~d 273 (576)
|+..+.....|++ +++||+|||++ .||+++|.. ...++++|+|
T Consensus 230 pe~~~~~~~~~~~---~l~d~~isr~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 305 (425)
T d1ivsa4 230 PERWKKVNMDWLE---NVKDWNISRQL-WWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFS 305 (425)
T ss_dssp SSTHHHHHHHHHH---TCCCEECEECC-SSSCCCCCEEETTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCEECHHHH
T ss_pred ccccceeeehhhh---hcCcceeeccc-ccCCccceeeccCcceeecCccccccccccccccccCccccccCcccccccc
Confidence 6667788888998 99999999999 999998841 1357788888
Q ss_pred cccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCC-cEEeeeccEEe-
Q psy2393 274 APIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLP-NNIFVHGFMTI- 351 (576)
Q Consensus 274 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p-~~~~~~g~v~~- 351 (576)
+.++|++..+.... ...+..+|+.+ +|++|+|+++||+.+|++++++.....| +.+++|||++.
T Consensus 306 a~~~~~~~~~~~~~----------~~~~~~~~p~d----i~~~G~Di~~~h~~~~~a~~~~~~~~~p~~~v~~hg~~L~~ 371 (425)
T d1ivsa4 306 SALWPLSTLGWPEE----------TEDLKAFYPGD----VLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDE 371 (425)
T ss_dssp HTSCTTTTTTTTTT----------CSHHHHSCSBS----CEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECT
T ss_pred chhHHHHhhCCCcC----------hHHHhCCCCce----EEEEEehhhhHHHHHHHHHHHHhcCCCccceEEEcceEECC
Confidence 88888776542211 13445555543 9999999999999999999888766655 89999999865
Q ss_pred CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhh
Q psy2393 352 NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFIS 403 (576)
Q Consensus 352 ~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~ 403 (576)
+|+|||||+||+|+++|++++ ||+|+|||||++.+|.+ +|++||++.+..
T Consensus 372 ~G~KMSKS~Gn~I~~~e~l~~-~g~D~lR~~L~~~~~~~-~d~dF~~~~~~~ 421 (425)
T d1ivsa4 372 KGQKMSKSKGNVIDPLEMVER-YGADALRFALIYLATGG-QDIRLDLRWLEM 421 (425)
T ss_dssp TSSBCBTTTTBCCCHHHHHHH-HCHHHHHHHHHHHCCTT-CCEECCHHHHHH
T ss_pred CCCCcCCCCCCCcCHHHHHHH-cCchHHHHHHHhcCCCC-CCCccCHHHhhh
Confidence 899999999999999999999 99999999999987776 789999997644
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.4e-59 Score=499.81 Aligned_cols=343 Identities=22% Similarity=0.274 Sum_probs=273.2
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCC-------
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMT------- 80 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~------- 80 (576)
.+++++|+|++|||||||+|||||+++++++||++||+|++| ++|.|++|+|+||+||+.+|++.+..
T Consensus 34 ~~~~~~f~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G-----~~V~~v~G~D~hG~~i~~~a~~~~~~~~~~~~~ 108 (452)
T d1ilea3 34 RKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRG-----YYAPRRAGWDTHGLPVELEVEKKLGLKSKREIE 108 (452)
T ss_dssp TTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTT-----CBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHH
T ss_pred cCCCCCEEEecCCCCCCCcchhhhHHHHHHHHHHHHHHHcCC-----CceeccCCcCCCCHHHHHHHHHhhccccccchh
Confidence 456789999999999999999999999999999999999999 99999999999999999999987642
Q ss_pred ----------HHHHHHHHHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCcc
Q psy2393 81 ----------PKEFINNISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIF 148 (576)
Q Consensus 81 ----------~~~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~ 148 (576)
+.+++..+.+.+.+.+.++|+..| .+++|+++.|.+.++++|.+|. ++|++|.+...++||+.|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~~f~~l~-~~G~iy~~~~~~~~~~~~~~~ 187 (452)
T d1ilea3 109 AYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLF-DRGLLYRDHKVVPYCPRCGTP 187 (452)
T ss_dssp HHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHH-HTTCEEEECCEEEEETTTTEE
T ss_pred HHHHHHHHHHHhhHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHHHHHHHHH-hcCCcccccccchhhcccccc
Confidence 345666778888899999999655 7889999999999999999999 999999999999999999999
Q ss_pred ccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCCh
Q psy2393 149 LPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQP 228 (576)
Q Consensus 149 l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~ 228 (576)
+++.++++.|| +|++||++++.+.+.+||+++ ..+++.+..++.....+|+
T Consensus 188 ~~~~~~~~~~p---------------------------~c~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~ 238 (452)
T d1ilea3 188 LSSHEVALGYP---------------------------HCWRCSTPLMYYATESWFIKN--TLFKDELIRNNQEIHWVPP 238 (452)
T ss_dssp CCHHHHHHTEE---------------------------BCSSSCCBCEEEECCEEEECG--GGGHHHHHHHHHHSEESSG
T ss_pred cccccccccCC---------------------------CccCcCCceEEeeccchhhhh--ccchhhhhhhhcccccCcc
Confidence 99988888775 456899999999999999999 9999999988333345666
Q ss_pred hHH-HHHHHHHhhcCCCCCcccccCCCCCCeecCCC---CC---------------------------------------
Q psy2393 229 EIV-NKIKEWLEKDNKFNDWDISRDAPYFGIKIPNT---LE--------------------------------------- 265 (576)
Q Consensus 229 ~~~-~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~---~~--------------------------------------- 265 (576)
... ..+..|++ ++.||+|||++ .||+|+|.. ..
T Consensus 239 ~~~~~~~~~~~~---~l~dw~IsR~~-~wg~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (452)
T d1ilea3 239 HIKEGRYGEWLK---NLVDWALSRNR-YWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACA 314 (452)
T ss_dssp GGTTTTTHHHHH---TCCCEECCBCC-SSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECT
T ss_pred hhhhceeeeecc---CCccceeeccc-ccccCCccccccccCcccccchhhhhhhhhccccCcccccccccccccccccc
Confidence 654 56677777 99999999999 999999941 00
Q ss_pred ---------cEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecC--cchhHhHHHHHHHh
Q psy2393 266 ---------KYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDI--FYFHILFWPAILKF 334 (576)
Q Consensus 266 ---------~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~--~~fh~~~~~a~l~~ 334 (576)
.++++|+++...+......... .+..+...||.+ +++.|.|+ .+||+.+|++++++
T Consensus 315 ~~~~~~~~~~v~~~w~~s~~~~~~~~~~~~~---------~~~~~~~~~p~~----~~~~g~d~~~~~fh~l~~~~~l~~ 381 (452)
T d1ilea3 315 CGGTMRRVPYVIDVWYDSGAMPFASLHYPFE---------HEEVFRESFPAD----FIAEGIDQTRGWFNSLHQLGVMLF 381 (452)
T ss_dssp TSSEEEECSCBCCHHHHHHHHHHHTTTTTTS---------CHHHHHHHSSBS----BEEEEGGGGGTHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhhccCccc---------hhhhcccCCcch----hheecCceechhhHHHHHhHHHHc
Confidence 1111222221111111100000 001111223332 45555555 57999999998875
Q ss_pred cCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhhhh
Q psy2393 335 SGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFISCV 405 (576)
Q Consensus 335 ~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~~ 405 (576)
.+ .+|+++++|||++. +|+|||||+||+|+|+|+|++ ||+|+|||||++.+|.+ +|++||++.+.+.+
T Consensus 382 ~~-~~~~~v~~hg~iL~~~G~KMSKS~gn~I~~~dll~~-ygaD~lR~yl~~~~~~~-~d~~Fs~~~~~e~~ 450 (452)
T d1ilea3 382 GS-IAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK-FGADALRWYIYVSAPPE-ADRRFGPNLVRETV 450 (452)
T ss_dssp SS-CSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTT-TCHHHHHHHHHHHSCSS-SCEECCHHHHHHHH
T ss_pred CC-CCCCeEEEeeEEECCCCcccCCCCCCCcCHHHHHHH-cCcHHHHHHHHhcCCCC-CCCCcCHHHHhHHh
Confidence 44 44688999999875 999999999999999999999 99999999999987655 78999999887654
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.3e-53 Score=433.78 Aligned_cols=340 Identities=25% Similarity=0.467 Sum_probs=287.3
Q ss_pred CCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2393 11 VRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISS 90 (576)
Q Consensus 11 ~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 90 (576)
+++|+||+|+|||||+|||||+|+++++|+++||+|++| |+|.||+|+|++|+||+.+|.+.|+++++++..+..
T Consensus 2 ~~~~~~~~~~PypnG~lHiGH~r~~v~~D~l~R~lr~~G-----~~V~~v~g~D~~g~~i~~~a~~~g~~~~~~~~~~~~ 76 (348)
T d2d5ba2 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDG-----YRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSG 76 (348)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCEEEecCCCCCCCCcccccCHHHHHHHHHHHHHHhcC-----CCeEecCcCCCCCHHHHHHHHHcCCCHHHhhhhHHH
Confidence 468999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCCCCc
Q psy2393 91 NRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQYGDF 170 (576)
Q Consensus 91 ~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~ 170 (576)
++++.++.+||.++.++++....+...++.++.++. ++|++|++...+.+|+.|+++
T Consensus 77 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~---------------------- 133 (348)
T d2d5ba2 77 RFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVY-EAGDIYYGEYEGLYCVSCERF---------------------- 133 (348)
T ss_dssp HHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEE----------------------
T ss_pred HHHHHHHhcCccccceeecccchhhHHHHHHHHHHH-hhCccccccccccccccccce----------------------
Confidence 999999999999999999999999999999999999 999999999999996665554
Q ss_pred cccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCC---CCChhHHHHHHHHHhhcCCCCCc
Q psy2393 171 CECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDK---RLQPEIVNKIKEWLEKDNKFNDW 247 (576)
Q Consensus 171 c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~dw 247 (576)
+....+.++.|+.+|...+.....+++.++ ..+.+.+.+. .... ......+.....+.. .++.||
T Consensus 134 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~l~d~ 201 (348)
T d2d5ba2 134 -------YTEKELVEGLCPIHGRPVERRKEGNYFFRM--EKYRPWLQEY-IQENPDLIRPEGYRNEVLAMLA--EPIGDL 201 (348)
T ss_dssp -------CCTTTSBTTBCTTTCSBCEEEEEEEEEECG--GGGHHHHHHH-HHTCTTSEESHHHHHHHHHHHT--SCCCCE
T ss_pred -------eccccccccccccCCCceEEecccccccch--HhhhhhHHHh-hhcccccccccccccccccccc--cccccc
Confidence 445566677888889999999999999999 8899888887 4332 234444555666666 677776
Q ss_pred cc---ccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchh
Q psy2393 248 DI---SRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFH 324 (576)
Q Consensus 248 ~i---sR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh 324 (576)
.. +++. .||++.|..+++++++|+++.+++.+..+... ...+..++. ..++++|.|+.++|
T Consensus 202 ~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~----~~~~~~g~d~~~~~ 265 (348)
T d2d5ba2 202 SISRPKSRV-PWGIPLPWDENHVTFVWFDALLNYVSALDYPE-----------GEAYRTFWP----HAWHLIGKDILKPH 265 (348)
T ss_dssp ECEEETTTC-CSSCEETTEEEEEECHHHHHHTHHHHTTTTTT-----------CHHHHHHGG----GEEEEEEGGGHHHH
T ss_pred ccccccccC-CCCcccccCCcccccchhccchhhhhhhcCCc-----------hhhhccccc----hheeeehhhccchh
Confidence 54 4554 79999999889999999999888877543210 012222222 23899999999999
Q ss_pred HhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchhhHhh
Q psy2393 325 ILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQSFIS 403 (576)
Q Consensus 325 ~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~ 403 (576)
+..++++..+.+..++..+++||+++. +|+|||||+||+|+++|++++ +|+|+|||||++.+|.. .|++||++.+.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~v~~~~~~l~~~G~KMSKS~Gn~i~~~ell~~-~g~D~lR~~l~~~~p~~-~d~dFs~~~~~~ 343 (348)
T d2d5ba2 266 AVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEK-YGRDALRYYLLREIPYG-QDTPVSEEALRT 343 (348)
T ss_dssp HTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHH-HCHHHHHHHHHHHSCTT-SCEECCHHHHHH
T ss_pred hhhhhhhccccccCCCCEEEeCceEEcccCCCCcCCCCcccCHHHHHHH-CCcHHHHHHHHhcCCCC-CCCCCCHHHHHH
Confidence 999998877777776678888888776 999999999999999999999 99999999999876654 789999999988
Q ss_pred hhhHH
Q psy2393 404 CVNSD 408 (576)
Q Consensus 404 ~~~~~ 408 (576)
++|++
T Consensus 344 ~~n~~ 348 (348)
T d2d5ba2 344 RYEAD 348 (348)
T ss_dssp HHHHH
T ss_pred HHcCC
Confidence 87763
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.5e-51 Score=440.49 Aligned_cols=213 Identities=23% Similarity=0.338 Sum_probs=195.9
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHH
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~ 87 (576)
.+++++|+|++||||+||.||||||++++++|+++||+||+| ++|.|++|||+||+||+.+|++.+..|.+++++
T Consensus 29 ~~~~~~~~i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G-----~~v~~~~G~D~~G~~~e~~~~k~~~~~~~~~~~ 103 (494)
T d1h3na3 29 PGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQG-----YEVLHPMGWDAFGLPAENAALKFGVHPKDWTYA 103 (494)
T ss_dssp CCTTCEEEEEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCCeEEEeCCCCCCCchhhhHHHHHHHHHHHHHHHHccC-----CcccCcCCcCcchHHHHHHHHHhCCChHHHHHH
Confidence 456788999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcccc--ccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceec-cCCCCCCC
Q psy2393 88 ISSNRKKYLDGFYIKFD--NWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKG-ECPICNAK 164 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~-~~p~c~~~ 164 (576)
+...+++++++||+++| ++++|+++.|.+.++++|.+|+ ++|+||++..+++|||.|+|+|+++||+. .|.
T Consensus 104 ~~~~~~~~~~~~g~~~d~~~~~~T~d~~~~~~~~~~f~~l~-~~g~iy~~~~~~~~~~~~~t~l~~~ev~~~~~~----- 177 (494)
T d1h3na3 104 NIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMW-EKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCW----- 177 (494)
T ss_dssp HHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHH-HTTCEEEEEEEEEEETTTTEEECGGGEETTEES-----
T ss_pred HHHHhHHHHHhcCcccCCCCceecCCccccchHHHHHHHhh-hCCcEEeeeEEEEeecCccceecchhcccCccc-----
Confidence 99999999999999554 7999999999999999999999 99999999999999999999999998843 221
Q ss_pred CCCCCccccCCCcCCCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCC
Q psy2393 165 DQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKF 244 (576)
Q Consensus 165 ~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (576)
..++.+++.+...+||+.+ +.+++.+..+ .....+++..+.....|+. ++
T Consensus 178 ------------------------~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~---~l 227 (494)
T d1h3na3 178 ------------------------RHEDTPVEKRELEQWYLRI--TAYAERLLKD-LEGLNWPEKVKAMQRAWIG---RL 227 (494)
T ss_dssp ------------------------SCTTSBCEEEEEEEEEECG--GGGHHHHHHT-TTTCBSCHHHHHHHHHHHC---SC
T ss_pred ------------------------cccCceEEeeccCchhhhh--hccccccccc-ccccccccccccccccccc---cc
Confidence 2345678899999999999 9999999988 7777788888999999997 89
Q ss_pred CCcccccCCCCCCeecCC
Q psy2393 245 NDWDISRDAPYFGIKIPN 262 (576)
Q Consensus 245 ~dw~isR~~~~WG~~iP~ 262 (576)
.||+|||++ .||.++|.
T Consensus 228 ~d~~Isr~~-~~~~~i~i 244 (494)
T d1h3na3 228 RDWLISRQR-YWGTPIPM 244 (494)
T ss_dssp CCEECEESC-SSSEECCE
T ss_pred ccccccccc-ccccceEE
Confidence 999999999 99999984
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-40 Score=337.08 Aligned_cols=286 Identities=14% Similarity=0.130 Sum_probs=207.3
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHH
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINN 87 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~ 87 (576)
++++-++||| .|||||++||||+|++|++|+++|++++.| ++|.+++|+||||.+|...|++.|.++++++++
T Consensus 19 ~~~~~~~yv~--Gptv~g~~HIGH~R~av~gD~laR~lr~~G-----~~V~~~~~~dd~G~~i~~~a~~~~~~~~e~~~~ 91 (315)
T d1li5a2 19 HAGEVGMYVC--GITVYDLCHIGHGRTFVAFDVVARYLRFLG-----YKLKYVRNITDIDDKIIKRANENGESFVAMVDR 91 (315)
T ss_dssp STTEEEEEEC--CCBSSSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCeEEEEec--CCcCCCCcccchhHHHHHHHHHHHHHHHcC-----CcEEEEecccchhHHHHHHHhhhhhcccccccc
Confidence 4555677886 479999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHHHHhcCCcEEecceeeeecCCCCccccccceeccCCCCCCCCCC
Q psy2393 88 ISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDTLYNKAKLIINKKINQFFDPIKNIFLPDRYIKGECPICNAKDQY 167 (576)
Q Consensus 88 ~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~ 167 (576)
+..++.++++.++|..+.++.+.. ++...+...+.+|. .+|.+|.......|+.... |+.+
T Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~~~-~~~~e~~~~~~~l~-~~~~~~~~~~~~~~~~~~~-----------~~~~------ 152 (315)
T d1li5a2 92 MIAEMHKDFDALNILRPDMEPRAT-HHIAEIIELTEQLI-AKGHAYVADNGDVMFDVPT-----------DPTY------ 152 (315)
T ss_dssp HHHHHHHHHHHTTCCCCSBCCBGG-GCHHHHHHHHHHHH-HTTSEEECTTSCEEECGGG-----------CTTT------
T ss_pred chhhhhhhHHhcCCCCCcEEEecc-hhhhhhhhHHHHhh-ccCceeccccceEEeeccc-----------cccc------
Confidence 999999999999998876665543 67788888899999 9999988776655543211 1111
Q ss_pred CCccccCCCcC-------CCCccCCCcccCCCCccEEeeecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhh
Q psy2393 168 GDFCECCSSIY-------TPTKLINPYSILSGTKPIIKSSKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEK 240 (576)
Q Consensus 168 g~~c~~cg~~~-------~~~~l~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 240 (576)
+..+..+.... ...+..+|.. ....+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~K~--------------------------------- 186 (315)
T d1li5a2 153 GVLSRQDLDQLQAGARVDVVDDKRNPMD-------------FVLWKM--------------------------------- 186 (315)
T ss_dssp TTTTTC----------------CCSTTC-------------EEEEEE---------------------------------
T ss_pred CccccccccccccCCcccccccccChhh-------------hhcccc---------------------------------
Confidence 11110000000 0000000000 000010
Q ss_pred cCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchhhhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecC
Q psy2393 241 DNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYLASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDI 320 (576)
Q Consensus 241 ~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~ 320 (576)
....+ .|.+..||.++|....+++++|+++...++ .+++.|.|+
T Consensus 187 -~~~~~---~~~~~~~g~~~~~~~~~~~~~w~~~l~~~~--------------------------------~~~~~~~d~ 230 (315)
T d1li5a2 187 -SKEGE---PSWPSPWGAGRPGWHIECSAMNCKQLGNHF--------------------------------DIHGGGSDL 230 (315)
T ss_dssp -CCTTS---CCBCCTTCSEEECSSHHHHHHHHHHHCSSE--------------------------------EEEECBGGG
T ss_pred -CccCC---ceeccCCceecccccchhhhHHHHHcCCcc--------------------------------ccccccccc
Confidence 01111 122237999988766666666655321111 167789999
Q ss_pred cchhHhHHHHHHHhcCC-CCCcEEeeeccEEeCCccccccCCCccChhHHhhcCCChhHHHHHHHhhCCCCCCCcccchh
Q psy2393 321 FYFHILFWPAILKFSGR-KLPNNIFVHGFMTINGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIASKLNNKIEDIDFNSQ 399 (576)
Q Consensus 321 ~~fh~~~~~a~l~~~~~-~~p~~~~~~g~v~~~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~~~~~~~d~~fs~~ 399 (576)
.++|...+++++.+... ..+..++++|||+++|+|||||+||+|+|+||++. ||+|++||||+++ ....+++||++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~KMSKs~Gn~V~~~dlle~-~g~D~lRy~lls~--~~~s~ldFs~e 307 (315)
T d1li5a2 231 MFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKY-YDAETVRYFLMSG--HYRSQLNYSEE 307 (315)
T ss_dssp TTTHHHHHHHHHHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTT-SCHHHHHHHHHSS--CTTSCEEECHH
T ss_pred ccccccccchhhhcccccccccEEEEEEEEecCCcEecCcCCCcccHHHHHHh-CCHHHHHHHHHcC--CCCCCCCcCHH
Confidence 99998888877665443 34467788899999999999999999999999999 9999999999986 44578999999
Q ss_pred hHhhh
Q psy2393 400 SFISC 404 (576)
Q Consensus 400 ~~~~~ 404 (576)
.+.+.
T Consensus 308 ~l~~a 312 (315)
T d1li5a2 308 NLKQA 312 (315)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77655
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.94 E-value=1.1e-28 Score=247.36 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=61.0
Q ss_pred eEEEeeecCcchhHhHHHHH---HHhcCCCCCcEEeeeccEEeCCc--cccccCCCccChhHHhhcCCChhHHHHHHHhh
Q psy2393 312 QYHFIGKDIFYFHILFWPAI---LKFSGRKLPNNIFVHGFMTINGK--KMSKSNKIGISPLYYLKIGMNPEWLRYYIASK 386 (576)
Q Consensus 312 ~i~~~G~D~~~fh~~~~~a~---l~~~~~~~p~~~~~~g~v~~~g~--KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~~ 386 (576)
.+|+.|+|++.+|..+++++ +..+|...| .+++||||+++|+ |||||+||+|+++||++. +++|++||++++.
T Consensus 230 ~~~~~g~d~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~l~l~ge~~KMSkrkGn~I~~~dll~~-~~~d~~Ry~~l~~ 307 (317)
T d1irxa2 230 DFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV-LEPGLVRFIYARH 307 (317)
T ss_dssp CBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCC-BCCEECCEEESCC---------CCCCHHHHHTT-SCHHHHHHHHHSS
T ss_pred eEEEecceecccchhhhHhhhhhhhhcCCCCc-EEEEEEEEEECCccccccCCCCccccHHHHHHH-CCHHHHHHHhcCC
Confidence 37899999999998876654 344566554 4689999999664 999999999999999999 9999999999998
Q ss_pred CCCCCCCcccc
Q psy2393 387 LNNKIEDIDFN 397 (576)
Q Consensus 387 ~~~~~~d~~fs 397 (576)
+|. +.++|+
T Consensus 308 ~~~--~~i~FD 316 (317)
T d1irxa2 308 RPN--KEIKID 316 (317)
T ss_dssp CTT--SCEEEC
T ss_pred CCC--CCcCCC
Confidence 664 556776
|
| >d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.4e-25 Score=202.50 Aligned_cols=157 Identities=33% Similarity=0.612 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCccccccCc
Q psy2393 414 INIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKLAKNN 493 (576)
Q Consensus 414 ~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~~~~~~~ 493 (576)
-|+++|+.+|+.++++|.+|... .| .++++.+....+.+.++|+++++++|++.++.+++.+|+|++..+||.+.+++
T Consensus 2 ~NL~~R~~~~i~k~~~g~vp~~~-~d-~~l~~~~~~~~~~~~~~~~~~~~~~al~~i~~~~~~~Nkyi~~~~PWkl~k~~ 79 (162)
T d1pfva1 2 VNLASRNAGFINKRFDGVLASEL-AD-PQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQE 79 (162)
T ss_dssp HHHHHHHHHHHHHHSTTBCCSSC-SC-HHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTST
T ss_pred cchHHHHHHHHHHhcCCcCCCCC-CC-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 48999999999999999988643 36 88999999999999999999999999999999999999999999999987766
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcccccccccCCCCCcccCCCCCCccCCChHHHHHHHhc
Q psy2393 494 IYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHKINKYRHLMTRVDKNIVDNLLKN 573 (576)
Q Consensus 494 ~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~~~~~~~~~~~~g~~~~~~~~lf~r~d~~~~~~~~~~ 573 (576)
....++.+++++++++++.++++|+||||.+|++||+.||.+ ..|+++...+. ||.+++++|||+|||.++|++++|+
T Consensus 80 ~~~~~~~~vl~~~~~~lr~~~~lL~P~mP~~s~ki~~~L~~~-~~~~~~~~~~~-g~~i~~~~pLF~rie~~~ie~~~e~ 157 (162)
T d1pfva1 80 GRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE-LTWDGIQQPLL-GHKVNPFKALYNRIDMRQVEALVEA 157 (162)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHTSC-CCTGGGGSCCC-SCBCCCCSCSSCCCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCC-CCHHHhhcccC-cCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 566778899999999999999999999999999999999976 67988766554 9999999999999999999998876
Q ss_pred c
Q psy2393 574 K 574 (576)
Q Consensus 574 ~ 574 (576)
.
T Consensus 158 ~ 158 (162)
T d1pfva1 158 S 158 (162)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.92 E-value=2.3e-24 Score=203.43 Aligned_cols=160 Identities=23% Similarity=0.399 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcc--cCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCccc
Q psy2393 411 GKYINIASRSSSFIEKYFKGYLNMKW--VKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWK 488 (576)
Q Consensus 411 ~~~~n~~~R~~~~~~~~~~~~~~~~~--~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~~ 488 (576)
+.++|+++|+.+|+.++++|.+|... ...+.++++.+..+.+.+.++|++|+|++|++.+++++..+|+|++..+||.
T Consensus 2 N~lGNl~~Rv~~~i~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~PW~ 81 (210)
T d1rqga1 2 NNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQPWK 81 (210)
T ss_dssp TTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56899999999999999999988632 2223899999999999999999999999999999999999999999999999
Q ss_pred cccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCcccccccccCCCCCcccCCCCCCccCCChHHHH
Q psy2393 489 LAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISPLQWINIFTPLTQNHKINKYRHLMTRVDKNIVD 568 (576)
Q Consensus 489 ~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~~~~~~~~~~~~~g~~~~~~~~lf~r~d~~~~~ 568 (576)
+.+++ ..++.+++++++++++.++++|+||||++|++||.+||.++..|..+ ..+++||++++++|||+|||.++|+
T Consensus 82 l~k~~--~~~~~~vl~~~~~~~~~l~ilL~PfmP~~a~~i~~~Lg~~~~~~~~~-~~~~~g~~i~~~~~LF~rie~e~i~ 158 (210)
T d1rqga1 82 TAKED--KVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEVKRWEF-RELPAGHKVRKPEILFKKVTDDQII 158 (210)
T ss_dssp HTTTC--HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSCCCSSC-CCCCTTCBCCCCCCSCCCCCHHHHH
T ss_pred hhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCcccchhh-hcCcccccCCCCccCcCCCCHHHHH
Confidence 87653 45678899999999999999999999999999999999987443332 2356799999999999999999999
Q ss_pred HHHhc
Q psy2393 569 NLLKN 573 (576)
Q Consensus 569 ~~~~~ 573 (576)
++.++
T Consensus 159 ~~~~~ 163 (210)
T d1rqga1 159 YFILN 163 (210)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=2.5e-23 Score=213.14 Aligned_cols=288 Identities=16% Similarity=0.146 Sum_probs=178.9
Q ss_pred CCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH---cCC------C
Q psy2393 10 DVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK---AGM------T 80 (576)
Q Consensus 10 ~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~---~g~------~ 80 (576)
.+++++|....|+|+|++||||+|+.+++|+|+|.++..| ++|.....+.|.|+++...+.. .+. .
T Consensus 5 ~~~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G-----~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~ 79 (370)
T d1iq0a2 5 RPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAG-----REVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEK 79 (370)
T ss_dssp EEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----EEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSC
T ss_pred CCCeEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHcC-----CEEEEEEeECCchHHHHHHHHHHHHhccccccccc
Confidence 4578999999999999999999999999999999999999 9999999999999987654321 110 0
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHhhcCccccccccCCChhhHHHHHHHHHH
Q psy2393 81 ------------------------------------PKEFINNISSNRKKYLDGFYIKFDNWYSTDSIENIDLVQKIYDT 124 (576)
Q Consensus 81 ------------------------------------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~ 124 (576)
..+..+.....+++++.++|+.+|.++..++..+...+.+++..
T Consensus 80 ~~~~~~~~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~~Es~l~~~~~~~~~i~~ 159 (370)
T d1iq0a2 80 YDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALAL 159 (370)
T ss_dssp HHHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccceeeceeeeecccccccchhhhHhh
Confidence 11123455666788999999999999887665566778899999
Q ss_pred HHhcCCcEEecce-----eeeecCCCCccccccceeccCCCCCCCCCCCCccccCCCcCCCCccCCCcccCCCCccEEee
Q psy2393 125 LYNKAKLIINKKI-----NQFFDPIKNIFLPDRYIKGECPICNAKDQYGDFCECCSSIYTPTKLINPYSILSGTKPIIKS 199 (576)
Q Consensus 125 L~~~~g~iy~~~~-----~~~~~~~~~~~l~~~~v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~~~~~~~~~~~~ 199 (576)
|. ++|.+|+... ..+.+.... .. ...+| ..+..++
T Consensus 160 l~-~~~~~~~~~~~~~~ga~~~d~~~~-------------------------------~~--~~~~~------~~vl~ks 199 (370)
T d1iq0a2 160 LE-QSPHVFRPREGKYAGALVMDASPV-------------------------------IP--GLEDP------FFVLLRS 199 (370)
T ss_dssp HT-TSTTEECCSSSTTTTCEEEECTTT-------------------------------SC--SCSCC------EEEEECT
T ss_pred hh-hccceeeccccccceEEEecCccc-------------------------------cc--cccCc------ceeeEec
Confidence 99 9999997652 223221100 00 00000 0111121
Q ss_pred ecceeEecCchhhHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCCCCcccccCCCCCCeecCCCCCcEEEEEeecccchh
Q psy2393 200 SKHFFFKLSDKRCIDFLRKWAIHDKRLQPEIVNKIKEWLEKDNKFNDWDISRDAPYFGIKIPNTLEKYFYVWLDAPIGYL 279 (576)
Q Consensus 200 ~~~~f~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dw~isR~~~~WG~~iP~~~~~~~~vw~d~~~~~~ 279 (576)
...+ -.....+.-.+.+.+......+ .. +++.- ...+++|.-...++.
T Consensus 200 DG~~------------------------tY~t~DiAy~~~K~~~~~~~~~--~~-~~~~~-----~~~i~i~~~d~~~~~ 247 (370)
T d1iq0a2 200 NGTA------------------------TYYAKDIAFQFWKMGILEGLRF--RP-YENPY-----YPGLRTSAPEGEAYT 247 (370)
T ss_dssp TSCB------------------------CHHHHHHHHHHHHTTSSCCCEE--EE-CCCSS-----CTTCEEEEEEEEECC
T ss_pred cCCc------------------------eEeccHHHHHhhhcccccccce--ec-cccCc-----cceeEeeccccccch
Confidence 1111 1111111111110011111111 00 01100 112444532221111
Q ss_pred hhcchhhhhCCCCCcccccccccccccCCCcceEEEeeecCcchhHhHHHHHHHhcCCCCC---cEEeeeccEEeCCccc
Q psy2393 280 ASLKNFFEKGGPKKKYNELRNFDEFISSPNTEQYHFIGKDIFYFHILFWPAILKFSGRKLP---NNIFVHGFMTINGKKM 356 (576)
Q Consensus 280 ~~~~~~~~~~g~~~~~~~~~~~~~~w~~~~~~~i~~~G~D~~~fh~~~~~a~l~~~~~~~p---~~~~~~g~v~~~g~KM 356 (576)
. . ..++++++|.+|..+...++ +.+..+|++.. -.++.+|+|..+|+||
T Consensus 248 ~-------------------~--------~d~~iyVvd~~Q~~h~~~v~-~~~~~~g~~~~~~~~~hv~~g~v~~~g~kM 299 (370)
T d1iq0a2 248 P-------------------K--------AEETINVVDVRQSHPQALVR-AALALAGYPALAEKAHHLAYETVLLEGRQM 299 (370)
T ss_dssp C-------------------C--------CSEEEEEEESSSCCCHHHHH-HHHHHTTCHHHHTTEEEEEECCEEETTBCS
T ss_pred h-------------------h--------hhHHHHHHhccchHHHHHHH-HHHHHhCCCchhhceeeEEEEEEecCCccc
Confidence 1 1 12459999999973333333 45677776532 3788889999999999
Q ss_pred cccCCCccChhHHhhcC------------------------CChhHHHHHHHhhCCCCCCCcccchhhHhhh
Q psy2393 357 SKSNKIGISPLYYLKIG------------------------MNPEWLRYYIASKLNNKIEDIDFNSQSFISC 404 (576)
Q Consensus 357 SKS~gn~i~~~dll~~g------------------------~g~d~lR~~l~~~~~~~~~d~~fs~~~~~~~ 404 (576)
|||.||+|+++|||+.. +|.+++||++++. +...++.||+++++++
T Consensus 300 StR~G~~v~l~dll~ea~~~a~~~~~~r~~~~~~~~~~a~~vgi~avky~~L~~--~~~~~~~Fd~d~~lsf 369 (370)
T d1iq0a2 300 SGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKT--EPKKQIDFRYQEALSF 369 (370)
T ss_dssp CC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHS--CTTSCEEECHHHHHCS
T ss_pred cccCCCeeEHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHhhhhheehhHhhc--CCCCCceECHHHhccC
Confidence 99999999999999731 7899999999998 4457899999987653
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=5.3e-23 Score=208.97 Aligned_cols=128 Identities=15% Similarity=0.141 Sum_probs=104.5
Q ss_pred cCCCCeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHH---c-------
Q psy2393 8 FKDVRRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEK---A------- 77 (576)
Q Consensus 8 ~~~~~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~---~------- 77 (576)
...+++++|....|+|+|||||||+|+++++|+|+|.++..| |+|.....++|.|.+|...+.. .
T Consensus 4 ~~~~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G-----~~V~re~yvnD~G~Qi~~l~~~~~~~~~~~~~~ 78 (348)
T d1f7ua2 4 LVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLG-----WEVIRMNYLGDWGKQFGLLAVGFERYGNEEALV 78 (348)
T ss_dssp CSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHH
T ss_pred CCCCCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCC-----CeEEEEEEECCchHHHHHHHHHHHHhccccccc
Confidence 456789999999999999999999999999999999999999 9999999999999987754421 0
Q ss_pred ---------------------CC----------------------C------HHHHHHHHHHHHHHHHhhcCcccccccc
Q psy2393 78 ---------------------GM----------------------T------PKEFINNISSNRKKYLDGFYIKFDNWYS 108 (576)
Q Consensus 78 ---------------------g~----------------------~------~~~~~~~~~~~~~~~l~~lgi~~d~~~~ 108 (576)
+. + .+.+++...+.+.+.+.+|||.+|.+..
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD~~~~ 158 (348)
T d1f7ua2 79 KDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSG 158 (348)
T ss_dssp HCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred cccchhHHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 00 0 0123456677899999999999998887
Q ss_pred CCChhhHHHHHHHHHHHHhcCCcEEecceeeeec
Q psy2393 109 TDSIENIDLVQKIYDTLYNKAKLIINKKINQFFD 142 (576)
Q Consensus 109 t~~~~~~~~v~~~~~~L~~~~g~iy~~~~~~~~~ 142 (576)
.++. +......+...|. ++|++|+.++..|++
T Consensus 159 Es~~-~~~~~~~v~~~L~-~~~~~~~~~ga~~~~ 190 (348)
T d1f7ua2 159 ESQV-SKESMLKAIDLFK-EKGLTHEDKGAVLID 190 (348)
T ss_dssp GGGC-CHHHHHHHHHHHH-HTTCEEEETTEEEEE
T ss_pred cccc-cccchHHHHHHHH-hhccccccCCccccc
Confidence 6653 4445567899999 999999998888773
|
| >d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=6.1e-22 Score=176.50 Aligned_cols=147 Identities=16% Similarity=0.273 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCcccc
Q psy2393 410 IGKYINIASRSSSFIEKYFKGYLNMKWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPWKL 489 (576)
Q Consensus 410 ~~~~~n~~~R~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~~~ 489 (576)
++.++|+++|+.+++.++++|.+|.....+ .+..+..+.+.+.++|+++++++|++.++++++.+|+|++..+||.+
T Consensus 2 aN~lGNlv~R~~~~~~k~~~g~vP~~~~~~---~~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~N~yi~~~~PW~l 78 (152)
T d2d5ba1 2 ADDLGNLVQRTRAMLFRFAEGRIPEPVAGE---ELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWEL 78 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTBCCCCCCCG---GGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCCcCCCCcchH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356899999999999999999988744322 34566778899999999999999999999999999999999999988
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc-ccccccc--cCCCCCcccCCCCCCccC
Q psy2393 490 AKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP-LQWINIF--TPLTQNHKINKYRHLMTR 561 (576)
Q Consensus 490 ~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~-~~~~~~~--~~~~~g~~~~~~~~lf~r 561 (576)
.+++ ..+++++++++++++++++++|+||||++|++||+.||+++ ..|+... ..+.+|+.++++++||||
T Consensus 79 ~k~d--~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~LF~r 151 (152)
T d2d5ba1 79 FKKE--PEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAERWGLAEPRPIPEEAPVLFPK 151 (152)
T ss_dssp HHHC--HHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCSSCCGGGGGSSCCSCCCBCCSCCCCSSCC
T ss_pred hccc--hHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCccCCHHHHHhcCCCCCCCCCCCCCCCCCC
Confidence 6553 45678899999999999999999999999999999999974 4565442 235678888999999998
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=3.9e-16 Score=154.65 Aligned_cols=97 Identities=19% Similarity=0.208 Sum_probs=74.8
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
++|+--+|+|||+|||||+|++++.+.++| ...| .-++. +||.+.+ .....+.+.|.
T Consensus 1 ~vvtRfaPsPtG~lHiG~~rtal~n~~~Ak--~~~G-----~~iLR---idDtD~~-------------R~~~~~~~~I~ 57 (305)
T d1j09a2 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWAR--RNGG-----RFIVR---IEDTDRA-------------RYVPGAEERIL 57 (305)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHH--HTTC-----EEEEC---BCCCCTT-------------SCCTTHHHHHH
T ss_pred CeEEecCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEE---eCcCCCc-------------cCchHHHHHHH
Confidence 367888999999999999999999999999 5566 54444 4555422 11235778999
Q ss_pred HHHhhcCcccccccc-------CCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 94 KYLDGFYIKFDNWYS-------TDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 94 ~~l~~lgi~~d~~~~-------t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
++|++||++||.... ....++.+...+++.+|. ++|++|.
T Consensus 58 ~dL~wLgi~wD~~p~~~~~~~~~~qS~r~~~y~~~~~~Li-~~g~aY~ 104 (305)
T d1j09a2 58 AALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELL-KRGWAYR 104 (305)
T ss_dssp HHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHH-HHTSEEE
T ss_pred HHHHHHhcCcccCCcCCCCCcceeeecchhHHHHHHHHHH-HcCCeee
Confidence 999999999985321 124478888899999999 9999996
|
| >d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=3.6e-14 Score=129.28 Aligned_cols=124 Identities=13% Similarity=0.083 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-cC--CCCC-CcccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhh
Q psy2393 409 LIGKYINIASRSSSFIEKY-FK--GYLN-MKWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINIFF 481 (576)
Q Consensus 409 ~~~~~~n~~~R~~~~~~~~-~~--~~~~-~~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y~ 481 (576)
+++++||+++.+....... ++ ...+ +.++. | +|+++++..+.+.+.++|++|+|++|+..+.+|+ ++|+.|+
T Consensus 1 F~~klWN~~rF~~~~~~~~~~~~~~~~~~~~l~~~D-~wil~~l~~~~~~v~~~~~~~~f~~a~~~l~~f~~~~l~~~Y~ 79 (180)
T d1ilea1 1 YFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMD-RWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYV 79 (180)
T ss_dssp THHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTH
T ss_pred CCcHHHHHHHHHHHhccccCCCccCCCChhhCCHHH-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHhhhhHHHH
Confidence 4678999975443322111 11 1111 12332 6 9999999999999999999999999999999997 7999999
Q ss_pred hhcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 482 DQNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 482 ~~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
+..|++.+..++... .+.+..++..++..+.++|+|||||+||+||+.|+..
T Consensus 80 e~~K~~l~~~~~~~~--~~~~~~~l~~il~~~l~llaP~~PfitEEiw~~l~~~ 131 (180)
T d1ilea1 80 RRNRRRFWKNEDALD--REAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRS 131 (180)
T ss_dssp HHHHHHHHTCTTTSS--TTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTT
T ss_pred Hhccchhhhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999987775432211 2233456668999999999999999999999999764
|
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=5.4e-12 Score=125.57 Aligned_cols=95 Identities=15% Similarity=0.007 Sum_probs=76.0
Q ss_pred EEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2393 14 IFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRK 93 (576)
Q Consensus 14 ~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 93 (576)
-+++--.|+|||+|||||+|++++.-.+|| +..| .-++++-.+|-- .....+.+.|.
T Consensus 19 ~v~tRFAPSPTG~LHiG~~rtal~n~l~Ak--~~~G-----~fiLRIEDtD~~----------------R~~~~~~~~I~ 75 (331)
T d1gtra2 19 TVHTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYKG-----QCNLRFDDTNPV----------------KEDIEYVESIK 75 (331)
T ss_dssp SCEEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTC-----EEEEEECCCCGG----------------GCCHHHHHHHH
T ss_pred eEEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEeCcCCCC----------------cccchHHHHHH
Confidence 367777899999999999999999999999 6778 777777655532 23356788999
Q ss_pred HHHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 94 KYLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 94 ~~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
++|++||+.||. .+. ..++.+.-+.++.+|. ++|++|.
T Consensus 76 ~dL~WLGl~wD~~~~~--QS~r~~~Y~~~~~~L~-~~G~aY~ 114 (331)
T d1gtra2 76 NDVEWLGFHWSGNVRY--SSDYFDQLHAYAIELI-NKGLAYV 114 (331)
T ss_dssp HHHHHTTCCCSSSCEE--GGGGHHHHHHHHHHHH-HTTSEEE
T ss_pred HHHHHHhcccccccee--cchHHHHHHHHHHhhh-hcCCccc
Confidence 999999999983 333 2356777888999999 9999995
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=2.4e-12 Score=125.69 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=73.2
Q ss_pred EEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2393 15 FVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSNRKK 94 (576)
Q Consensus 15 ~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 94 (576)
||+--+|+|||+|||||+|++++.-.++| +..| .-++.+-.+|. + .....+.+.|.+
T Consensus 3 ~~tRFAPsPtG~lHiG~~rtal~n~~~Ak--~~~G-----~~iLRieDtD~---~-------------R~~~~~~~~I~~ 59 (286)
T d1nzja_ 3 YIGRFAPSPSGELHFGSLIAALGSYLQAR--ARQG-----RWLVRIEDIDP---P-------------REVPGAAETILR 59 (286)
T ss_dssp CEEEECCCTTSCCCHHHHHHHHHHHHHHH--HTTC-----EEEEEECCSCG---G-------------GSCTTHHHHHHH
T ss_pred ceEeeCcCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEeCCCCC---C-------------cCCHHHHHHHHH
Confidence 56777899999999999999999999998 6677 66666654443 2 112357789999
Q ss_pred HHhhcCccccc-cccCCChhhHHHHHHHHHHHHhcCCcEEe
Q psy2393 95 YLDGFYIKFDN-WYSTDSIENIDLVQKIYDTLYNKAKLIIN 134 (576)
Q Consensus 95 ~l~~lgi~~d~-~~~t~~~~~~~~v~~~~~~L~~~~g~iy~ 134 (576)
+|++||+.+|. .+..+ ++.+...+++.+|. ++|.+|.
T Consensus 60 dL~wlgl~~d~~~~~QS--~r~~~Y~~~~~~L~-~~g~aY~ 97 (286)
T d1nzja_ 60 QLEHYGLHWDGDVLWQS--QRHDAYREALAWLH-EQGLSYY 97 (286)
T ss_dssp HHHHTTCCCSSCCEEGG--GCHHHHHHHHHHHH-HTTCEEE
T ss_pred HHHHhhhccccccchhH--HHHHHHHHHHHHHH-HcCCccc
Confidence 99999999985 44333 56677788899999 9999995
|
| >d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=7.1e-13 Score=124.44 Aligned_cols=114 Identities=22% Similarity=0.220 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC--ccc-CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhhhhc
Q psy2393 410 IGKYINIASRSSSFIEKYFKGYLNM--KWV-KDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINIFFDQN 484 (576)
Q Consensus 410 ~~~~~n~~~R~~~~~~~~~~~~~~~--~~~-~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y~~~~ 484 (576)
+|++||+.+.+. .+.++.-+. ... .| +|++++++.+.+.+.++|++|+|++|+..|++|+ .+|++|++..
T Consensus 1 aNKlwNa~rF~~----~~~~~~~~~~~~~~~~D-kwil~~l~~~i~~v~~~~~~y~f~~a~~~l~~F~~~~l~d~Y~e~~ 75 (218)
T d1ivsa2 1 ANKLYNAARFVL----LSREGFQAKEDTPTLAD-RFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAA 75 (218)
T ss_dssp HHHHHHHHHHHH----HHSSSCCCCBCCCCHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred ChHHHHHHHHHH----hCcCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhhHHHHHHHH
Confidence 478999974432 222222121 111 15 9999999999999999999999999999999998 8999999999
Q ss_pred CccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCC
Q psy2393 485 KPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNIS 535 (576)
Q Consensus 485 k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~ 535 (576)
|++..... ..+ ..++..++..+.++|+|||||+||+||+.|+..
T Consensus 76 k~~~~~~~----~~~---~~~l~~~l~~~l~ll~P~~PfitEeiw~~l~~~ 119 (218)
T d1ivsa2 76 KPALKAGN----AHT---LRTLEEVLAVLLKLLHPMMPFLTSELYQALTGK 119 (218)
T ss_dssp HHHHHTTB----HHH---HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHCC
T ss_pred hhhccccc----ccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 98665432 122 345667888999999999999999999999764
|
| >d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=2e-12 Score=110.67 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCC-cccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCcc
Q psy2393 409 LIGKYINIASRSSSFIEKYFKGYLNM-KWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKPW 487 (576)
Q Consensus 409 ~~~~~~n~~~R~~~~~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~~ 487 (576)
|+++++|++......+... ....+. .++..++|++++++.+.++|.+++++|+|+.|+..+++|++....|......
T Consensus 1 Flnklw~~v~~~~~~~~~~-~~~~~~~~~~~~dk~~~~~l~~~i~~v~~~~e~~~fn~ai~~l~~f~n~l~~~~~~~~~- 78 (128)
T d1h3na1 1 FLNRIYRRVAEDREALLET-SGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPV- 78 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTC-CCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCS-
T ss_pred CcHHHHHHHHHHHhhcccc-ccccCcccCCHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcccchhhhhhhh-
Confidence 3567777654433322211 111121 2222239999999999999999999999999999999998776666543221
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCCCc
Q psy2393 488 KLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNISP 536 (576)
Q Consensus 488 ~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~~~ 536 (576)
. .++.++++.+.++|+|||||+||+||+.||.+.
T Consensus 79 -------~--------~~~~~~l~~ll~ll~P~~P~itEeiw~~l~~~s 112 (128)
T d1h3na1 79 -------T--------PVYRTAIRYYLQMLFPFAPHLAEELWHWFWPDS 112 (128)
T ss_dssp -------C--------HHHHHHHHHHHHHHTTTSHHHHHHHHTTTCSSC
T ss_pred -------H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 1 122356788999999999999999999998654
|
| >d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.35 E-value=2.8e-13 Score=131.92 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHcC---CCCCC-cccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhhh
Q psy2393 410 IGKYINIASRSSSFIEKYFK---GYLNM-KWVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQT--NFINIFFD 482 (576)
Q Consensus 410 ~~~~~n~~~R~~~~~~~~~~---~~~~~-~~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~--~~~n~y~~ 482 (576)
+++++|+++.+.+-+.. ++ ..++. .+.. | +|++.++..+.+.+.++|++|+|+++++.|++|+ .+++.|++
T Consensus 1 YRKirNt~RFlL~nl~~-f~~~~~~~~~~~l~~lD-~wiL~~l~~~~~~v~~~y~~y~f~~~~~~l~~F~~~~ls~~Y~~ 78 (273)
T d1ffya1 1 YRKIRNTLRFMLGNIND-FNPDTDSIPESELLEVD-RYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLD 78 (273)
T ss_dssp HHHHHHHHHHHHHTSTT-CCHHHHCCCGGGSCHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHH
T ss_pred CchHHHHHHHHHHhccC-CCcccccCChhhCCHHH-HHHHHHHHHHHHHHHHHHHhccccchHHHHHhhhhccchHHHHh
Confidence 45788887544332211 11 12332 2322 6 9999999999999999999999999999999998 69999999
Q ss_pred hcCccccccCcccHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHcCC
Q psy2393 483 QNKPWKLAKNNIYHEKLHKISSRLLEAFRILTIYLKPILPNLAKSVETFLNI 534 (576)
Q Consensus 483 ~~k~~~~~~~~~~~~~~~~v~~~l~~~l~~l~~ll~Pi~P~~ae~i~~~L~~ 534 (576)
.+|++.+.++..+.. .+++..++..+|..+.++|+|||||++|+||+.++.
T Consensus 79 ~~Kdrly~~~~ds~~-r~~~~~~l~~il~~l~~~laPilPf~~Eei~~~~~~ 129 (273)
T d1ffya1 79 YGKDILYIEQRDSHI-RRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPH 129 (273)
T ss_dssp HHHHHHTTSCTTCHH-HHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTT
T ss_pred hccccccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999988866532222 234456677899999999999999999999998864
|
| >d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.09 E-value=2.8e-11 Score=74.95 Aligned_cols=35 Identities=51% Similarity=1.001 Sum_probs=33.8
Q ss_pred eeccCCCCCCCCCCCCccccCCCcCCCCccCCCcc
Q psy2393 154 IKGECPICNAKDQYGDFCECCSSIYTPTKLINPYS 188 (576)
Q Consensus 154 v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~ 188 (576)
|+|+||.|+++++||+.|+.||+.+++.+|++|+|
T Consensus 1 V~G~CP~C~~~~a~GDqCe~CG~~~~p~eLinP~C 35 (35)
T d1rqga3 1 VIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRC 35 (35)
T ss_dssp CCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBC
T ss_pred CeEECCCCCCCcccCcchhhcCCccCHHHhcCCCC
Confidence 68999999999999999999999999999999987
|
| >d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=5.2e-11 Score=73.60 Aligned_cols=35 Identities=57% Similarity=1.243 Sum_probs=33.1
Q ss_pred eeccCCCCCCCCCCCCccccCCCcCCCCccCCCcc
Q psy2393 154 IKGECPICNAKDQYGDFCECCSSIYTPTKLINPYS 188 (576)
Q Consensus 154 v~~~~p~c~~~~~~g~~c~~cg~~~~~~~l~~p~~ 188 (576)
|+|+||.|+++++||+.|+.||..+++.+|++|++
T Consensus 1 V~G~CP~C~~~~a~GDqCe~CG~~~~p~eLinP~S 35 (35)
T d1pfva3 1 VKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKS 35 (35)
T ss_dssp EEEECTTTCCSSEETTBCTTTCCBCCGGGSEEEEE
T ss_pred CeeECCCCCCcccccccHHHcCCcCCHHHhcCCCC
Confidence 68999999999999999999999999999999874
|
| >d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.13 E-value=1e-05 Score=67.44 Aligned_cols=77 Identities=9% Similarity=-0.009 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC--cccCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhcCc
Q psy2393 410 IGKYINIASRSSSFIEKYFKGYLNM--KWVKDNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFFDQNKP 486 (576)
Q Consensus 410 ~~~~~n~~~R~~~~~~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~~~~k~ 486 (576)
..+++++++|+++++++......+. ...+++..|+..+..+++.+.++.+++++|.++.+++++++.+|+||+.++.
T Consensus 4 gpYiqYa~AR~~SIl~k~~~~~~~~~~~~~~~E~~Li~~l~~~p~vl~~a~~~~~Ph~l~~yl~~La~~F~~fY~~~~~ 82 (126)
T d1iq0a1 4 GPYVQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNAREN 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEET
T ss_pred HHHHHHHHHHHHHHHHhccccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 6788999999999999874333222 1122227899999999999999999999999999999999999999987663
|
| >d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.92 E-value=1.7e-05 Score=65.89 Aligned_cols=78 Identities=10% Similarity=-0.048 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCC----CCc---ccC-ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q psy2393 410 IGKYINIASRSSSFIEKYFKGYL----NMK---WVK-DNDTFLSKLRVVSSSIQKYYENRNFNKVLYIVIEQTNFINIFF 481 (576)
Q Consensus 410 ~~~~~n~~~R~~~~~~~~~~~~~----~~~---~~~-d~~~l~~~l~~~~~~v~~a~~~~~~~~~~~~l~~~~~~~n~y~ 481 (576)
..+++++++|+.+++++...... +.. +.. ++..|+..+..+++.+.++.++++++.+++++.+++..+|+||
T Consensus 3 gpYiqYa~aRi~SIlrk~~~~~~~~~~~~~~~~l~~~~e~~Li~~l~~~p~vl~~a~~~~~Ph~l~~yl~~La~~F~~fY 82 (124)
T d1f7ua1 3 GPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCY 82 (124)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCChhhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999987532111 111 111 1267889999999999999999999999999999999999999
Q ss_pred hhcCcc
Q psy2393 482 DQNKPW 487 (576)
Q Consensus 482 ~~~k~~ 487 (576)
+.++..
T Consensus 83 ~~~~Il 88 (124)
T d1f7ua1 83 DVLWVA 88 (124)
T ss_dssp HHCCST
T ss_pred HhcccC
Confidence 998853
|
| >d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.43 E-value=0.00071 Score=65.04 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=46.0
Q ss_pred CeEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2393 12 RRIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFINNISSN 91 (576)
Q Consensus 12 ~~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 91 (576)
++.+.+.- -|||.+||||... -..+.++++ .| +++.+..| |.|..- ...+..+-.++....
T Consensus 28 ~~~~y~G~--~PTG~lHlGh~v~---~~~~~~lq~-~g-----~~~~~~Ia-D~~a~~-------~~~~~~~~~~~~~~~ 88 (306)
T d1j1ua_ 28 EKSAYIGF--EPSGKIHLGHYLQ---IKKMIDLQN-AG-----FDIIILLA-DLHAYL-------NQKGELDEIRKIGDY 88 (306)
T ss_dssp SEEEEEEE--CCCSSCBHHHHHH---HHHHHHHHH-TT-----EEEEEEEC-HHHHHH-------TTCCCHHHHHHHHHH
T ss_pred CCeEEEeE--CCCCcchHHHHHH---HHHHHHHHH-CC-----CcEEEEec-cHHHHh-------hhccchhhhhhhhhH
Confidence 33344443 4569999999762 234555555 49 99887665 222221 111122345555666
Q ss_pred HHHHHhhcCccccccccC
Q psy2393 92 RKKYLDGFYIKFDNWYST 109 (576)
Q Consensus 92 ~~~~l~~lgi~~d~~~~t 109 (576)
..+.+...|++++.++..
T Consensus 89 ~~~~~~a~G~~~~~~~~~ 106 (306)
T d1j1ua_ 89 NKKVFEAMGLKAKYVYGS 106 (306)
T ss_dssp HHHHHHHTTCCCEEEEGG
T ss_pred HHHHHHhhhccccccccc
Confidence 777788999987654443
|
| >d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.41 E-value=0.00025 Score=69.53 Aligned_cols=66 Identities=20% Similarity=0.186 Sum_probs=40.7
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEeCCc-cccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTINGK-KMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~~g~-KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+..+|.||.. |..+=.-+....+...|..+.+.-+..++|+ |||||.||.|++.| +++.++=.+++
T Consensus 186 ~vp~G~DQ~~-~i~l~Rdla~r~~~~~~~~~~~p~L~gldG~~KMSKS~~naI~L~d------sp~~i~~Ki~~ 252 (343)
T d1h3fa1 186 VEMGGTDQRF-NLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE------PPEAMFKKLMR 252 (343)
T ss_dssp EEEEEGGGHH-HHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS------CHHHHHHHHHT
T ss_pred ccccccchHH-HHHHHHHHHhhcCccccceeeccccccccccchhhcccccceeeec------hhHHHHHHHhc
Confidence 7788999953 3222112334455555444444333444884 99999999998764 56667655554
|
| >d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=94.78 E-value=0.0073 Score=57.76 Aligned_cols=69 Identities=13% Similarity=-0.032 Sum_probs=42.9
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
+.++|.||-+.+..--- +....+...|...++.-++.. +|+|||||.||.||+.+- . -+|..+.-++++
T Consensus 188 iqiGGsDQ~~Ni~~Grd-l~~~~~~~~~~~~it~pLl~~~~G~Km~KS~~n~i~l~~~--~-tsP~~~y~k~~n 257 (323)
T d1jila_ 188 IQVGGSDQWGNITSGIE-LMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLDAE--K-TSPYEFYQFWIN 257 (323)
T ss_dssp EEEEEGGGHHHHHHHHH-HHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSBCBSSTT--T-SCHHHHHHHHHT
T ss_pred hhhhccccHHHhhhhhh-hhhhhcccccceEEecccccchhhhhhhhcCCCCeeeecc--c-CChHHHHHHhhc
Confidence 88999999755432211 122222233456666666666 899999999999998662 2 345555555544
|
| >d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.12 E-value=0.098 Score=51.05 Aligned_cols=78 Identities=12% Similarity=0.173 Sum_probs=49.8
Q ss_pred CCCCeEEEEcCCCCCCCc-ccchHhhhHHHHHHHHHHHh-hcCCCCCCcceEEecCCCcccHHHHHHHHHcCCCHHHHHH
Q psy2393 9 KDVRRIFVTTALPYANGE-LHIGHIMEYIQADIWVRFQC-MQQDNGKSRQVYFICADDAHGAAIMIAAEKAGMTPKEFIN 86 (576)
Q Consensus 9 ~~~~~~~v~~~~P~~nG~-lHiGH~~~~i~~Dvl~R~~~-~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~~~~~~~~ 86 (576)
+.+++++|.+|. -|+|. +||||..+.+. .|++. ..| .+|.+. ..|+|-. .-...++.+. .
T Consensus 70 ~~gkp~~vytG~-~PSg~~lHlGh~v~~~~----~~~~q~~~~-----~~v~i~-iaD~~a~------~~~~~~~~e~-~ 131 (386)
T d1r6ta2 70 ENKKPFYLYTGR-GPSSEAMHVGHLIPFIF----TKWLQDVFN-----VPLVIQ-MTDDEKY------LWKDLTLDQA-Y 131 (386)
T ss_dssp HTTCCEEEEEEE-CCCTTCCBGGGHHHHHH----HHHHHHHHT-----CCEEEE-ECHHHHH------HHSSCCHHHH-H
T ss_pred HcCCCeEEEecc-CCCCchhHHHHHHHHHH----HHHHHHhcc-----cceEEE-ecchHhh------hcccCCHHHH-H
Confidence 456788877754 77896 89999987653 34544 456 666654 3444411 1235566654 4
Q ss_pred HHHHHHHHHHhhcCcccc
Q psy2393 87 NISSNRKKYLDGFYIKFD 104 (576)
Q Consensus 87 ~~~~~~~~~l~~lgi~~d 104 (576)
++..+..+++-++|++++
T Consensus 132 ~~~~e~~~~~lA~GlDp~ 149 (386)
T d1r6ta2 132 GDAVENAKDIIACGFDIN 149 (386)
T ss_dssp HHHHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHHHHhCCCcc
Confidence 555677777788999886
|
| >d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.16 Score=48.63 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=44.2
Q ss_pred eEEEEcCCCCCCCcccchHhhhHHHHHHHHHHHhhcCCCCCCcceEEecCCCcccHHHHHHHHHcCC--CHHHHHHHHHH
Q psy2393 13 RIFVTTALPYANGELHIGHIMEYIQADIWVRFQCMQQDNGKSRQVYFICADDAHGAAIMIAAEKAGM--TPKEFINNISS 90 (576)
Q Consensus 13 ~~~v~~~~P~~nG~lHiGH~~~~i~~Dvl~R~~~~~G~~~~~~~V~~v~g~D~~G~~i~~~a~~~g~--~~~~~~~~~~~ 90 (576)
++.|+.|. -|||++||||+.+.+. +.+++ ..| +++.+..| |.|+.-. ...+. ..+...+.+..
T Consensus 32 ~~~vy~G~-~PTg~lHlG~~l~~~~---l~~~q-~~g-----~~~~~~Ia-D~~a~~~----~~~~~~~~~~~~~~~~~~ 96 (339)
T d1n3la_ 32 ELKIYWGT-ATTGKPHVAYFVPMSK---IADFL-KAG-----CEVTILFA-DLHAYLD----NMKAPWELLELRVSYYEN 96 (339)
T ss_dssp CCEEEEEE-CCSSCCBGGGHHHHHH---HHHHH-HTT-----CEEEEEEC-HHHHHHT----TTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEee-CCCCccHHHHHHHHHH---HHHHH-HCC-----CcEEEEec-chhhhcc----CCCCchHHHHHHHHHHHH
Confidence 34444433 4579999999887543 44444 469 98887664 2232110 00000 01123455566
Q ss_pred HHHHHHhhcCcccc
Q psy2393 91 NRKKYLDGFYIKFD 104 (576)
Q Consensus 91 ~~~~~l~~lgi~~d 104 (576)
.+...+..+|++++
T Consensus 97 ~~~~~~~a~g~d~~ 110 (339)
T d1n3la_ 97 VIKAMLESIGVPLE 110 (339)
T ss_dssp HHHHHHHHHTCCCT
T ss_pred HHHHHHHhhccChH
Confidence 67788889999887
|
| >d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=88.42 E-value=0.37 Score=35.84 Aligned_cols=34 Identities=6% Similarity=0.101 Sum_probs=29.2
Q ss_pred HHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhhh
Q psy2393 450 VSSSIQKYY-ENRNFNKVLYIVIEQTNFINIFFDQ 483 (576)
Q Consensus 450 ~~~~v~~a~-~~~~~~~~~~~l~~~~~~~n~y~~~ 483 (576)
+.+.+.++| ++++++.|+..|+++++..|++.+.
T Consensus 23 ~~~~F~~Am~DDlNTp~Ala~lfel~k~~N~~~~~ 57 (87)
T d1li5a1 23 FEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE 57 (87)
T ss_dssp HHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHhcC
Confidence 456678889 6999999999999999999987654
|
| >d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=87.78 E-value=0.13 Score=48.46 Aligned_cols=69 Identities=12% Similarity=-0.019 Sum_probs=40.8
Q ss_pred EEEeeecCcchhHhHHHHHHHhcCCCCCcEEeeeccEEe-CCccccccCCCccChhHHhhcCCChhHHHHHHHh
Q psy2393 313 YHFIGKDIFYFHILFWPAILKFSGRKLPNNIFVHGFMTI-NGKKMSKSNKIGISPLYYLKIGMNPEWLRYYIAS 385 (576)
Q Consensus 313 i~~~G~D~~~fh~~~~~a~l~~~~~~~p~~~~~~g~v~~-~g~KMSKS~gn~i~~~dll~~g~g~d~lR~~l~~ 385 (576)
++++|.||-+....-.- +......+.+...++.-.+.. +|+|||||.||.||+.+= . -+|..+.=++++
T Consensus 188 ~qiGGsDQ~gNi~~G~d-li~~~~~~~~~~~lT~PLL~~~~G~K~~ks~~n~i~l~~~--~-tsp~~~yq~~~n 257 (319)
T d2ts1a_ 188 LQIGGSDQWGNITAGLE-LIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDKE--K-TSPYEFYQFWIN 257 (319)
T ss_dssp EEEEEGGGHHHHHHHHH-HHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCCCBSSTT--T-SCHHHHHHHHHT
T ss_pred hhhccchhhhHHHHHHH-HHHHhcccccceEeecccccccccceeeecCCCCcccccc--c-CCHHHHHHHhcC
Confidence 88999999754432221 122221222345566666666 899999999999998652 2 344444444443
|