Psyllid ID: psy23
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 386 | 2.2.26 [Sep-21-2011] | |||||||
| Q960Z0 | 805 | Kinesin-like protein Klp1 | yes | N/A | 0.665 | 0.319 | 0.746 | 1e-119 | |
| O00139 | 706 | Kinesin-like protein KIF2 | yes | N/A | 0.727 | 0.398 | 0.663 | 1e-110 | |
| P28740 | 705 | Kinesin-like protein KIF2 | yes | N/A | 0.730 | 0.4 | 0.659 | 1e-109 | |
| Q2NL05 | 660 | Kinesin-like protein KIF2 | yes | N/A | 0.727 | 0.425 | 0.660 | 1e-109 | |
| Q5ZKV8 | 706 | Kinesin-like protein KIF2 | yes | N/A | 0.730 | 0.399 | 0.662 | 1e-109 | |
| Q91637 | 682 | Kinesin-like protein KIF2 | N/A | N/A | 0.709 | 0.401 | 0.653 | 1e-109 | |
| Q9WV63 | 705 | Kinesin-like protein KIF2 | yes | N/A | 0.727 | 0.398 | 0.660 | 1e-109 | |
| Q5R9Y9 | 744 | Kinesin-like protein KIF2 | yes | N/A | 0.694 | 0.360 | 0.678 | 1e-107 | |
| Q922S8 | 721 | Kinesin-like protein KIF2 | no | N/A | 0.683 | 0.366 | 0.658 | 1e-106 | |
| P70096 | 718 | Kinesin-like protein KIF2 | no | N/A | 0.709 | 0.381 | 0.649 | 1e-106 |
| >sp|Q960Z0|KI10A_DROME Kinesin-like protein Klp10A OS=Drosophila melanogaster GN=Klp10A PE=1 SV=1 | Back alignment and function desciption |
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Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/276 (74%), Positives = 230/276 (83%), Gaps = 19/276 (6%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
++++AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG+F GK QDCK GIYAMAAKDVF
Sbjct: 345 YKYTAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGEFNGKVQDCKNGIYAMAAKDVFVT 404
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
L P+YR +NL VSASFFEIYSGKVFDLL++K KLRVLEDGKQQVQ+VGLTE+VVD VEE
Sbjct: 405 LNMPRYRAMNLVVSASFFEIYSGKVFDLLSDKQKLRVLEDGKQQVQVVGLTEKVVDGVEE 464
Query: 213 VLKLIQHGNSA------------SINNICFSFL-------QVHGKFSLIDLAGNERGADT 253
VLKLIQHGN+A S ++ F + ++HGKFS IDLAGNERG DT
Sbjct: 465 VLKLIQHGNAARTSGQTSANSNSSRSHAVFQIVLRPQGSTKIHGKFSFIDLAGNERGVDT 524
Query: 254 SSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMI 313
SSA+RQTRMEGAEINKSLLALKECIRALG++ AHLPFR SKLTQVLRDSFIG+KS+TCMI
Sbjct: 525 SSADRQTRMEGAEINKSLLALKECIRALGKQSAHLPFRVSKLTQVLRDSFIGEKSKTCMI 584
Query: 314 AMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPP 349
AMISPG+SSCEH+LNTLRYADRVKEL D E P
Sbjct: 585 AMISPGLSSCEHTLNTLRYADRVKELVVKDIVEVCP 620
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Required during anaphase to drive sister chromatid separation to promote flux by actively depolymerizing kinetochore microtubules at their pole-associated minus ends, thereby moving chromatids through a "poleward flux". Drosophila melanogaster (taxid: 7227) |
| >sp|O00139|KIF2A_HUMAN Kinesin-like protein KIF2A OS=Homo sapiens GN=KIF2A PE=1 SV=3 | Back alignment and function description |
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| >sp|P28740|KIF2A_MOUSE Kinesin-like protein KIF2A OS=Mus musculus GN=Kif2a PE=1 SV=2 | Back alignment and function description |
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| >sp|Q2NL05|KIF2A_BOVIN Kinesin-like protein KIF2A OS=Bos taurus GN=KIF2A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5ZKV8|KIF2A_CHICK Kinesin-like protein KIF2A OS=Gallus gallus GN=KIF2A PE=2 SV=2 | Back alignment and function description |
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| >sp|Q91637|KIF2A_XENLA Kinesin-like protein KIF2A OS=Xenopus laevis GN=kif2a PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9WV63|KIF2A_RAT Kinesin-like protein KIF2A OS=Rattus norvegicus GN=Kif2a PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5R9Y9|KIF2A_PONAB Kinesin-like protein KIF2A OS=Pongo abelii GN=KIF2A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q922S8|KIF2C_MOUSE Kinesin-like protein KIF2C OS=Mus musculus GN=Kif2c PE=1 SV=1 | Back alignment and function description |
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| >sp|P70096|KIF2C_CRIGR Kinesin-like protein KIF2C OS=Cricetulus griseus GN=KIF2C PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 386 | ||||||
| 332026751 | 1360 | Kinesin-like protein Klp10A [Acromyrmex | 0.748 | 0.212 | 0.766 | 1e-131 | |
| 307167670 | 1347 | Kinesin-like protein Klp10A [Camponotus | 0.748 | 0.214 | 0.766 | 1e-131 | |
| 383863603 | 784 | PREDICTED: LOW QUALITY PROTEIN: kinesin- | 0.748 | 0.368 | 0.766 | 1e-130 | |
| 340714204 | 739 | PREDICTED: kinesin-like protein Klp10A-l | 0.748 | 0.391 | 0.760 | 1e-130 | |
| 340714206 | 770 | PREDICTED: kinesin-like protein Klp10A-l | 0.748 | 0.375 | 0.760 | 1e-130 | |
| 307193581 | 521 | Kinesin-like protein Klp10A [Harpegnatho | 0.748 | 0.554 | 0.763 | 1e-130 | |
| 350417435 | 771 | PREDICTED: kinesin-like protein Klp10A-l | 0.748 | 0.374 | 0.760 | 1e-130 | |
| 322801483 | 881 | hypothetical protein SINV_10882 [Solenop | 0.748 | 0.328 | 0.763 | 1e-130 | |
| 328791080 | 774 | PREDICTED: LOW QUALITY PROTEIN: kinesin | 0.746 | 0.372 | 0.760 | 1e-130 | |
| 380025156 | 1067 | PREDICTED: kinesin-like protein KIF2A-li | 0.746 | 0.269 | 0.760 | 1e-129 |
| >gi|332026751|gb|EGI66860.1| Kinesin-like protein Klp10A [Acromyrmex echinatior] | Back alignment and taxonomy information |
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Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/313 (76%), Positives = 259/313 (82%), Gaps = 24/313 (7%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
++++AKPLV+TIFEGGMATCFAYGQTGSGKTHTMGGDF GKTQDCKKGIYAM AKDVFK
Sbjct: 672 YKYTAKPLVQTIFEGGMATCFAYGQTGSGKTHTMGGDFNGKTQDCKKGIYAMVAKDVFKC 731
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
LK KYR LNL +SASFFEIYSGKVFDLLA+K KLRVLEDGKQQVQIVGLTE+VV++ +E
Sbjct: 732 LKLAKYRPLNLVISASFFEIYSGKVFDLLADKEKLRVLEDGKQQVQIVGLTEKVVETCDE 791
Query: 213 VLKLIQHGNSA------------SINNICFSFL-------QVHGKFSLIDLAGNERGADT 253
VLKLIQHGNSA S ++ F + +VHGKFSLIDLAGNERGADT
Sbjct: 792 VLKLIQHGNSARTSGQTSANSNSSRSHAVFQIIARIPGTHKVHGKFSLIDLAGNERGADT 851
Query: 254 SSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMI 313
SSANRQTRMEGAEINKSLLALKECIRAL RKG HLPFRASKLTQVLRDSFIG+KS+TCMI
Sbjct: 852 SSANRQTRMEGAEINKSLLALKECIRALSRKGTHLPFRASKLTQVLRDSFIGEKSKTCMI 911
Query: 314 AMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPTIIQRQSKRSSPSTSPQRNDSH 373
AMISPGMSSCEHSLNTLRYADRVKELAATDPTE PT R K Q N+S
Sbjct: 912 AMISPGMSSCEHSLNTLRYADRVKELAATDPTEIKASPTDDDRGMK-----IEEQGNNSV 966
Query: 374 LNDSDLAQLRSLN 386
L+DSDLAQLRSLN
Sbjct: 967 LSDSDLAQLRSLN 979
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Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307167670|gb|EFN61173.1| Kinesin-like protein Klp10A [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|383863603|ref|XP_003707269.1| PREDICTED: LOW QUALITY PROTEIN: kinesin-like protein Klp10A-like [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|340714204|ref|XP_003395621.1| PREDICTED: kinesin-like protein Klp10A-like isoform 1 [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|340714206|ref|XP_003395622.1| PREDICTED: kinesin-like protein Klp10A-like isoform 2 [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|307193581|gb|EFN76319.1| Kinesin-like protein Klp10A [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|350417435|ref|XP_003491421.1| PREDICTED: kinesin-like protein Klp10A-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|322801483|gb|EFZ22144.1| hypothetical protein SINV_10882 [Solenopsis invicta] | Back alignment and taxonomy information |
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| >gi|328791080|ref|XP_393225.4| PREDICTED: LOW QUALITY PROTEIN: kinesin 13 [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|380025156|ref|XP_003696345.1| PREDICTED: kinesin-like protein KIF2A-like [Apis florea] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 386 | ||||||
| FB|FBgn0030268 | 805 | Klp10A "Kinesin-like protein a | 0.339 | 0.162 | 0.824 | 2.2e-121 | |
| UNIPROTKB|Q2NL05 | 660 | KIF2A "Kinesin-like protein KI | 0.336 | 0.196 | 0.753 | 1.7e-111 | |
| MGI|MGI:1921054 | 721 | Kif2c "kinesin family member 2 | 0.414 | 0.221 | 0.630 | 2.4e-104 | |
| ZFIN|ZDB-GENE-070912-298 | 700 | kif2c "kinesin family member 2 | 0.373 | 0.205 | 0.625 | 3e-96 | |
| UNIPROTKB|F1N0Y3 | 683 | KIF2B "Kinesin-like protein KI | 0.341 | 0.193 | 0.659 | 5.9e-96 | |
| UNIPROTKB|F1LM94 | 669 | Kif2c "Kinesin-like protein KI | 0.422 | 0.243 | 0.608 | 2.3e-95 | |
| UNIPROTKB|A6H750 | 683 | KIF2B "Kinesin-like protein KI | 0.341 | 0.193 | 0.651 | 3.4e-95 | |
| UNIPROTKB|F1RSG0 | 684 | LOC100520975 "Uncharacterized | 0.341 | 0.192 | 0.643 | 4.5e-94 | |
| FB|FBgn0034824 | 626 | Klp59C "Kinesin-like protein a | 0.300 | 0.185 | 0.754 | 9.8e-90 | |
| FB|FBgn0034827 | 729 | Klp59D "Kinesin-like protein a | 0.339 | 0.179 | 0.628 | 1.2e-89 |
| FB|FBgn0030268 Klp10A "Kinesin-like protein at 10A" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 571 (206.1 bits), Expect = 2.2e-121, Sum P(3) = 2.2e-121
Identities = 108/131 (82%), Positives = 120/131 (91%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
++++AKPLVKTIFEGGMATCFAYGQTGSGKTHTMGG+F GK QDCK GIYAMAAKDVF
Sbjct: 345 YKYTAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGEFNGKVQDCKNGIYAMAAKDVFVT 404
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
L P+YR +NL VSASFFEIYSGKVFDLL++K KLRVLEDGKQQVQ+VGLTE+VVD VEE
Sbjct: 405 LNMPRYRAMNLVVSASFFEIYSGKVFDLLSDKQKLRVLEDGKQQVQVVGLTEKVVDGVEE 464
Query: 213 VLKLIQHGNSA 223
VLKLIQHGN+A
Sbjct: 465 VLKLIQHGNAA 475
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| UNIPROTKB|Q2NL05 KIF2A "Kinesin-like protein KIF2A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| MGI|MGI:1921054 Kif2c "kinesin family member 2C" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-070912-298 kif2c "kinesin family member 2C" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1N0Y3 KIF2B "Kinesin-like protein KIF2B" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LM94 Kif2c "Kinesin-like protein KIF2C" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A6H750 KIF2B "Kinesin-like protein KIF2B" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RSG0 LOC100520975 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| FB|FBgn0034824 Klp59C "Kinesin-like protein at 59C" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0034827 Klp59D "Kinesin-like protein at 59D" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q2NL05 | KIF2A_BOVIN | No assigned EC number | 0.6601 | 0.7279 | 0.4257 | yes | N/A |
| Q960Z0 | KI10A_DROME | No assigned EC number | 0.7463 | 0.6658 | 0.3192 | yes | N/A |
| O00139 | KIF2A_HUMAN | No assigned EC number | 0.6633 | 0.7279 | 0.3980 | yes | N/A |
| Q9WV63 | KIF2A_RAT | No assigned EC number | 0.6601 | 0.7279 | 0.3985 | yes | N/A |
| P28740 | KIF2A_MOUSE | No assigned EC number | 0.6590 | 0.7305 | 0.4 | yes | N/A |
| Q6S004 | KIF6_DICDI | No assigned EC number | 0.5118 | 0.6554 | 0.2456 | yes | N/A |
| Q5R9Y9 | KIF2A_PONAB | No assigned EC number | 0.6780 | 0.6943 | 0.3602 | yes | N/A |
| Q5ZKV8 | KIF2A_CHICK | No assigned EC number | 0.6622 | 0.7305 | 0.3994 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 386 | |||
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 1e-133 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-100 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-88 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 9e-84 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 5e-67 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 1e-59 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 1e-58 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 6e-57 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 5e-53 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 2e-48 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 3e-48 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 3e-48 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 1e-42 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 3e-41 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 1e-38 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 2e-38 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 1e-34 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 2e-24 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 5e-23 |
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
Score = 384 bits (988), Expect = e-133
Identities = 156/264 (59%), Positives = 188/264 (71%), Gaps = 29/264 (10%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+R + KPL+ +FEGG+ATCFAYGQTGSGKT+TM GD ++G+YA+AA+D+F+L
Sbjct: 69 YRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDEN------QEGLYALAARDIFRL 122
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
L P +L V+ SFFEIY GK+FDLL ++ +L VLEDGK VQIVGLTE+ V SV+E
Sbjct: 123 LAQPN---DDLGVTVSFFEIYGGKLFDLLNDRKRLSVLEDGKGNVQIVGLTEKPVTSVDE 179
Query: 213 VLKLIQHG-----------NSAS--------INNICFSFLQVHGKFSLIDLAGNERGADT 253
+L+LI+ G N S I ++ GK S IDLAG+ERGADT
Sbjct: 180 LLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKLNKLLGKLSFIDLAGSERGADT 239
Query: 254 SSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMI 313
S +RQTR EGAEINKSLLALKECIRAL AH+PFR SKLTQVLRDSFIG+ S+T MI
Sbjct: 240 SEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGN-SKTVMI 298
Query: 314 AMISPGMSSCEHSLNTLRYADRVK 337
A ISP SSCEH+LNTLRYADRVK
Sbjct: 299 ATISPSASSCEHTLNTLRYADRVK 322
|
KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322 |
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
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| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
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| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
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| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
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| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
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| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
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| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
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| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
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| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
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| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
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| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
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| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
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| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
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| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
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| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
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| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
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| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 386 | |||
| KOG0246|consensus | 676 | 100.0 | ||
| KOG4280|consensus | 574 | 100.0 | ||
| KOG0243|consensus | 1041 | 100.0 | ||
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| KOG0245|consensus | 1221 | 100.0 | ||
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| KOG0240|consensus | 607 | 100.0 | ||
| KOG0242|consensus | 675 | 100.0 | ||
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| KOG0241|consensus | 1714 | 100.0 | ||
| KOG0239|consensus | 670 | 100.0 | ||
| KOG0244|consensus | 913 | 100.0 | ||
| KOG0247|consensus | 809 | 100.0 | ||
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 94.19 | |
| PRK06620 | 214 | hypothetical protein; Validated | 93.62 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 93.4 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 93.05 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 93.02 | |
| PRK09087 | 226 | hypothetical protein; Validated | 92.11 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 91.77 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 90.69 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 90.27 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 89.21 | |
| PRK12377 | 248 | putative replication protein; Provisional | 88.9 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 88.9 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 88.38 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 88.37 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 88.22 | |
| PRK08727 | 233 | hypothetical protein; Validated | 87.81 | |
| PRK08116 | 268 | hypothetical protein; Validated | 87.72 | |
| PRK06526 | 254 | transposase; Provisional | 87.65 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 87.62 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 87.45 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 87.3 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 87.19 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 85.45 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 85.15 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 84.66 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 84.62 | |
| PRK08181 | 269 | transposase; Validated | 84.15 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 84.1 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 84.04 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 83.99 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 82.81 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 82.77 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 82.68 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 82.67 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 82.66 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 82.56 | |
| KOG0989|consensus | 346 | 82.29 | ||
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 81.58 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 81.32 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 81.22 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 81.05 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 80.68 | |
| COG5008 | 375 | PilU Tfp pilus assembly protein, ATPase PilU [Cell | 80.5 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 80.45 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 80.44 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 80.41 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 80.41 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 80.23 | |
| PF01935 | 229 | DUF87: Domain of unknown function DUF87; InterPro: | 80.17 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 80.09 |
| >KOG0246|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-80 Score=611.76 Aligned_cols=272 Identities=71% Similarity=1.103 Sum_probs=263.3
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
+..|+||++||+.++++.||..+++|||+.+|+|..+|+||||||||||||||.|++.+..+++..||+.++.+++|..+
T Consensus 257 n~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L 336 (676)
T KOG0246|consen 257 NQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLL 336 (676)
T ss_pred hceEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeecccccccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc--------
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI-------- 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~-------- 225 (386)
.........+.|++||||||+.++||||+++++++++||.++.++|.||++..|.+.+|++.+|+.|++.|+
T Consensus 337 ~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs 416 (676)
T KOG0246|consen 337 RQPTYRKLDLKVYVTFFEIYGGKVYDLLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANS 416 (676)
T ss_pred cccchhhcceEEEEEEEEEeCcchhhhhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcc
Confidence 998888899999999999999999999999999999999999999999999999999999999999988776
Q ss_pred ----ceeEEEE-------eEEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcccCCCCc
Q psy23 226 ----NNICFSF-------LQVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASK 294 (386)
Q Consensus 226 ----~h~i~~l-------~~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~vPyRdSk 294 (386)
+|++|+| ...+|++.||||||+||++.+...+++.+.||+.|||||+||..||+||.+++.|+|||.||
T Consensus 417 ~SSRSHAvfQIilr~~~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SK 496 (676)
T KOG0246|consen 417 NSSRSHAVFQIILRKHGEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSK 496 (676)
T ss_pred cccccceeEeeeeecCCcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Confidence 5999999 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q psy23 295 LTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPT 345 (386)
Q Consensus 295 LT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~ 345 (386)
||.+|+|+|+|.|++|+||+||||...+.+.||+|||||+|+|++......
T Consensus 497 LTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~~ 547 (676)
T KOG0246|consen 497 LTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGGP 547 (676)
T ss_pred HHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCCc
Confidence 999999999998999999999999999999999999999999999887764
|
|
| >KOG4280|consensus | Back alignment and domain information |
|---|
| >KOG0243|consensus | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG0245|consensus | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >KOG0240|consensus | Back alignment and domain information |
|---|
| >KOG0242|consensus | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >KOG0241|consensus | Back alignment and domain information |
|---|
| >KOG0239|consensus | Back alignment and domain information |
|---|
| >KOG0244|consensus | Back alignment and domain information |
|---|
| >KOG0247|consensus | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
| >KOG0989|consensus | Back alignment and domain information |
|---|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
| >COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
| >PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 386 | ||||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 1e-108 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 1e-105 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 1e-105 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 1e-103 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 4e-53 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 2e-35 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 7e-35 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 2e-33 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 4e-33 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 9e-32 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 1e-30 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 4e-30 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 4e-30 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 4e-30 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 4e-30 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 4e-30 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 5e-30 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 5e-30 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 9e-30 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 1e-29 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-29 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 2e-29 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 2e-29 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 2e-29 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 3e-29 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 3e-29 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 4e-29 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 2e-28 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-28 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 5e-28 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 6e-28 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 1e-27 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 1e-27 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 3e-26 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 5e-26 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-24 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 3e-23 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 3e-23 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 4e-23 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 5e-23 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 5e-23 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 6e-23 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 2e-22 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 3e-22 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 3e-22 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 4e-22 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 4e-22 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 1e-21 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 5e-21 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 1e-20 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 1e-20 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 2e-20 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 2e-20 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 9e-20 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 1e-19 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 4e-18 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 1e-05 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 4e-05 |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
|
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
Score = 421 bits (1085), Expect = e-147
Identities = 180/264 (68%), Positives = 212/264 (80%), Gaps = 17/264 (6%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+RF+A+PLV+TIFEGG ATCFAYGQTGSGKTHTMGGD GK+Q+ KGIYAMA++DVF L
Sbjct: 139 YRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLL 198
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
P+YR LNL V +FFEIY+GKVFDLL +KAKLRVLED +QQVQ+VGL E +V ++
Sbjct: 199 KNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADD 258
Query: 213 VLKLIQHGNSA----------------SINNICF-SFLQVHGKFSLIDLAGNERGADTSS 255
V+K+I G++ + I + ++HGKFSL+DLAGNERGADTSS
Sbjct: 259 VIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSS 318
Query: 256 ANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAM 315
A+RQTRMEGAEINKSLLALKECIRALG+ AH PFR SKLTQVLRDSFIG+ SRTCMIAM
Sbjct: 319 ADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAM 378
Query: 316 ISPGMSSCEHSLNTLRYADRVKEL 339
ISPG+SSCE++LNTLRYADRVKEL
Sbjct: 379 ISPGISSCEYTLNTLRYADRVKEL 402
|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 386 | |||
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.95 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.92 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 99.87 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 93.38 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 91.87 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 90.66 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 88.45 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 86.41 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 86.41 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 86.28 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 85.63 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 85.32 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 84.73 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 82.77 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 82.46 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 82.35 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 82.14 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 80.34 |
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-77 Score=589.59 Aligned_cols=271 Identities=35% Similarity=0.496 Sum_probs=239.8
Q ss_pred CCceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHH
Q psy23 73 GNKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152 (386)
Q Consensus 73 ~~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~ 152 (386)
..+.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.
T Consensus 54 ~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~------~~~Giipr~~~~lF~~ 127 (350)
T 2vvg_A 54 VPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNK------EEPGAIPNSFKHLFDA 127 (350)
T ss_dssp --EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCS------SSBCHHHHHHHHHHHH
T ss_pred CceEeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCC------ccCchHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999974 4799999999999999
Q ss_pred hcCCCCCCceeeEEEEEEEEEcCeeeecccccccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc-------
Q psy23 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI------- 225 (386)
Q Consensus 153 ~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~------- 225 (386)
++... .+..|.|++||+|||||+|+|||+++.++.+++|+.++++|.|++++.|.+++|++++|..|.++|.
T Consensus 128 i~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N 206 (350)
T 2vvg_A 128 INSSS-SNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMN 206 (350)
T ss_dssp HHTCC-TTEEEEEEEEEEEEETTEEEETTTTEEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC--------
T ss_pred HHhhc-cCCcEEEEEEEEEEeCCEEEEcccCCcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCC
Confidence 98643 5689999999999999999999999889999999999999999999999999999999999987765
Q ss_pred -----ceeEEEEe------------EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcc
Q psy23 226 -----NNICFSFL------------QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHL 288 (386)
Q Consensus 226 -----~h~i~~l~------------~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~v 288 (386)
+|+||++. ...|+|+|||||||||..+++. .+.+++|+..||+||++|++||.+|++++.||
T Consensus 207 ~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~-~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hv 285 (350)
T 2vvg_A 207 DTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGA-TGETLVEGAKINLSLSALGLVISKLVEGATHI 285 (350)
T ss_dssp --CTTCEEEEEEEEEEEEC----CEEEEEEEEEEECCCCCC----------------CTTHHHHHHHHHHHHHHHTCSSC
T ss_pred CCCCcceEEEEEEEEEeeccCCCccEEEEEEEEEeCCCCCccccccc-cHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCC
Confidence 59999982 2468999999999999988764 45678899999999999999999999999999
Q ss_pred cCCCCccccccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCCCch
Q psy23 289 PFRASKLTQVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELAATDPTEGPPPPT 352 (386)
Q Consensus 289 PyRdSkLT~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~~~~~~~~~~~~ 352 (386)
||||||||+||||+ |||||+|+||+||||+..+++||++||+||+|||+|+|.|.+|..+.+.
T Consensus 286 PyRdSkLT~lLqds-LgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~~ 348 (350)
T 2vvg_A 286 PYRDSKLTRLLQDS-LGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA 348 (350)
T ss_dssp CGGGCHHHHHTTTT-TTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTTC
T ss_pred CccccHHHHHHHHh-cCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCchhc
Confidence 99999999999999 5999999999999999999999999999999999999999999977654
|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 386 | ||||
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 2e-64 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 7e-49 | |
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 1e-47 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 3e-45 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 4e-45 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 8e-45 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 9e-40 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 2e-38 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 1e-33 |
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Score = 207 bits (528), Expect = 2e-64
Identities = 181/265 (68%), Positives = 212/265 (80%), Gaps = 17/265 (6%)
Query: 93 FRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKL 152
+RF+A+PLV+TIFEGG ATCFAYGQTGSGKTHTMGGD GK+Q+ KGIYAMA++DVF L
Sbjct: 98 YRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLL 157
Query: 153 LKSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEE 212
P+YR LNL V +FFEIY+GKVFDLL +KAKLRVLED +QQVQ+VGL E +V ++
Sbjct: 158 KNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADD 217
Query: 213 VLKLIQHGN-----------SASINNICFSFLQV------HGKFSLIDLAGNERGADTSS 255
V+K+I G+ S S + + + HGKFSL+DLAGNERGADTSS
Sbjct: 218 VIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSS 277
Query: 256 ANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLTQVLRDSFIGDKSRTCMIAM 315
A+RQTRMEGAEINKSLLALKECIRALG+ AH PFR SKLTQVLRDSFIG+ SRTCMIAM
Sbjct: 278 ADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAM 337
Query: 316 ISPGMSSCEHSLNTLRYADRVKELA 340
ISPG+SSCE++LNTLRYADRVKEL+
Sbjct: 338 ISPGISSCEYTLNTLRYADRVKELS 362
|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 386 | |||
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.4 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.55 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.86 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.35 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 86.03 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 85.07 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 84.96 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 84.69 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 83.22 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 81.74 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 80.4 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 80.17 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 80.14 |
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Probab=100.00 E-value=3.5e-72 Score=555.03 Aligned_cols=267 Identities=69% Similarity=1.071 Sum_probs=232.5
Q ss_pred CceeeeeEEcCCCCChHHHHHhhhhHHHHHHhcCcCceeeeeccCCCCCceeeccCCCCCCcccccchhhhhHHHHHHHh
Q psy23 74 NKLSRCWKVLSLKNTVPLDFRFSAKPLVKTIFEGGMATCFAYGQTGSGKTHTMGGDFQGKTQDCKKGIYAMAAKDVFKLL 153 (386)
Q Consensus 74 ~~~f~fd~vf~~~~sq~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~~~~~~~Gli~r~~~~LF~~~ 153 (386)
.+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+..+......+||+||++++||..+
T Consensus 79 ~~~f~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~ 158 (362)
T d1v8ka_ 79 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLK 158 (362)
T ss_dssp EEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHH
T ss_pred ceeEeCCeecCCCCCHHHHHHHHHHHHHHHHHhccCceEEeeccCCCCCceeeeecCCCCcccccCCeeeehhhhHHHHh
Confidence 36799999999999999999999999999999999999999999999999999998766656678999999999999999
Q ss_pred cCCCCCCceeeEEEEEEEEEcCeeeecccccccceEEEcCCCceEEeccEEEEeCCHHHHHHHHHhcccccc--------
Q psy23 154 KSPKYRGLNLHVSASFFEIYSGKVFDLLAEKAKLRVLEDGKQQVQIVGLTEQVVDSVEEVLKLIQHGNSASI-------- 225 (386)
Q Consensus 154 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~l~i~ed~~~~~~v~~l~~~~V~s~~e~~~ll~~g~~~r~-------- 225 (386)
++.......|.|++||+|||||+++|||++...+.+++++.+++++.|++++.|.+++|++.++..|..+|.
T Consensus 159 ~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~~T~~N~ 238 (362)
T d1v8ka_ 159 NQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANS 238 (362)
T ss_dssp TSHHHHTTCCEEEEEEEEEETTEEEETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------
T ss_pred hcccccccchhheeeeeeecCCeEEecccCCccccccccccCCcccCCCEEEEecCHHHHHHHHhccccccccccccCcc
Confidence 876656779999999999999999999999999999999999999999999999999999999999987775
Q ss_pred ----ceeEEEEe-----EEeeeEEEEeCCCCCCCCcCCcchhhhHHHHHHhhHhHHHHHHHHHHHhcCCCcccCCCCccc
Q psy23 226 ----NNICFSFL-----QVHGKFSLIDLAGNERGADTSSANRQTRMEGAEINKSLLALKECIRALGRKGAHLPFRASKLT 296 (386)
Q Consensus 226 ----~h~i~~l~-----~~~s~L~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~aL~~vI~aL~~~~~~vPyRdSkLT 296 (386)
+|++|++. ...++|+||||||+||..++...++.+++|+..||+||.+|++||.+|++++.|||||+||||
T Consensus 239 ~SSRSH~i~~i~i~~~~~~~~~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL~~~~~hiPyR~SkLT 318 (362)
T d1v8ka_ 239 NSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLT 318 (362)
T ss_dssp CCCSSEEEEEEEEESSSSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHH
T ss_pred cCcceeeEEEEEEEecceeeeeEeeeecccccccccccccchhhhhhhhhhcccHHHHHHHHHHHhcCCCcCCCccCHHH
Confidence 59999994 456899999999999988887777777789999999999999999999999999999999999
Q ss_pred cccccccCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc
Q psy23 297 QVLRDSFIGDKSRTCMIAMISPGMSSCEHSLNTLRYADRVKELA 340 (386)
Q Consensus 297 ~lL~d~llggns~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~ 340 (386)
+||||+|+||||+|+||+||||+..+++||++||+||+|||+|.
T Consensus 319 ~lLkdsllGgns~t~~i~~vsp~~~~~~eTl~TL~fa~rak~It 362 (362)
T d1v8ka_ 319 QVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 362 (362)
T ss_dssp HHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC
T ss_pred HhhhhccCCCCccEEEEEEeCCChhhHHHHHHHHHHHHHHhcCC
Confidence 99999977999999999999999999999999999999999883
|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
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| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
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| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
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| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
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| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
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| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
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| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
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| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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