Psyllid ID: psy2427
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 660 | 2.2.26 [Sep-21-2011] | |||||||
| Q17EN4 | 462 | Probable hydroxyacid-oxoa | N/A | N/A | 0.537 | 0.768 | 0.693 | 1e-152 | |
| Q7Q547 | 464 | Probable hydroxyacid-oxoa | yes | N/A | 0.566 | 0.806 | 0.669 | 1e-148 | |
| A6QP15 | 466 | Hydroxyacid-oxoacid trans | yes | N/A | 0.55 | 0.778 | 0.674 | 1e-141 | |
| Q4QQW3 | 467 | Hydroxyacid-oxoacid trans | yes | N/A | 0.543 | 0.768 | 0.671 | 1e-140 | |
| Q6P371 | 463 | Hydroxyacid-oxoacid trans | yes | N/A | 0.539 | 0.768 | 0.682 | 1e-140 | |
| Q08B39 | 463 | Hydroxyacid-oxoacid trans | N/A | N/A | 0.539 | 0.768 | 0.679 | 1e-140 | |
| Q28XT3 | 464 | Probable hydroxyacid-oxoa | yes | N/A | 0.524 | 0.745 | 0.672 | 1e-138 | |
| Q8R0N6 | 465 | Hydroxyacid-oxoacid trans | yes | N/A | 0.525 | 0.746 | 0.668 | 1e-138 | |
| Q5RF11 | 467 | Hydroxyacid-oxoacid trans | yes | N/A | 0.539 | 0.762 | 0.671 | 1e-137 | |
| Q9W265 | 464 | Probable hydroxyacid-oxoa | yes | N/A | 0.537 | 0.765 | 0.668 | 1e-136 |
| >sp|Q17EN4|HOT_AEDAE Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Aedes aegypti GN=AAEL003729 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 540 bits (1392), Expect = e-152, Method: Compositional matrix adjust.
Identities = 251/362 (69%), Positives = 301/362 (83%)
Query: 15 NPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSL 74
N + + EYAFEM+SSTIR GPGV++E+G D+ N+ A+ VC++TD +++KL VK DSL
Sbjct: 33 NVSSENEYAFEMSSSTIRYGPGVSKELGHDLQNLNAKNVCIVTDRNVAKLNSVKVAFDSL 92
Query: 75 TRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPE 134
TR G++++++D+ RVEPT S L A ++ R + D+F+A+GGGSVIDTCK ANL+ D E
Sbjct: 93 TRCGIQYQVYDETRVEPTDQSLLHAAEYARQNKFDSFVAIGGGSVIDTCKVANLFSADRE 152
Query: 135 AEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALK 194
AEFLDYVNAPIGK K V V LKPLIA+PTT+GTGSETTGV IFDY+PL AKTGI+++ L+
Sbjct: 153 AEFLDYVNAPIGKAKEVNVKLKPLIAVPTTAGTGSETTGVVIFDYKPLHAKTGISSKYLR 212
Query: 195 PTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP 254
P LGLIDPLHTLS PE+V AY GFDVFCHALESFTA+PYTER P +P LRP YQG NP
Sbjct: 213 PQLGLIDPLHTLSQPEKVAAYCGFDVFCHALESFTAIPYTERGSAPMNPNLRPPYQGSNP 272
Query: 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPIS 314
+SDVWARFAL+ IR+ F AV+NQDDL+ARS+MHLAS MAGVGFGNAGVHLCHGLSYPIS
Sbjct: 273 ISDVWARFALKIIRENFISAVFNQDDLKARSNMHLASTMAGVGFGNAGVHLCHGLSYPIS 332
Query: 315 GNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKA 374
G+VK F P GYS DHPIIPHGLSVVM+APAVF FTAAS PERH+EAAELLGA+VS+ +
Sbjct: 333 GHVKKFVPDGYSGDHPIIPHGLSVVMTAPAVFKFTAASCPERHLEAAELLGANVSKANRN 392
Query: 375 DA 376
DA
Sbjct: 393 DA 394
|
Catalyzes the cofactor-independent reversible oxidation of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA) coupled to reduction of 2-ketoglutarate (2-KG) to D-2-hydroxyglutarate (D-2-HG). L-3-hydroxybutyrate (L-3-OHB) is also a substrate for HOT when using 2-KG as hydrogen acceptor, resulting in the formation of D-2-HG. Aedes aegypti (taxid: 7159) EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 2EC: 4 |
| >sp|Q7Q547|HOT_ANOGA Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Anopheles gambiae GN=AGAP006646 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 524 bits (1350), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/375 (66%), Positives = 305/375 (81%), Gaps = 1/375 (0%)
Query: 2 AEARPLRLLSDMSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHL 61
A +RP+ +S ++ + +K+ AFEM+SSTIR GPGVTRE+G D+ N+ A+ VCV++D ++
Sbjct: 23 AHSRPV-AISQQTSCSAEKDTAFEMSSSTIRYGPGVTRELGHDLQNLGAKSVCVVSDRNV 81
Query: 62 SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVID 121
+L VK LD++ R G++ LFD VRVEPT +S A F RS + DAF+A+GGGS ID
Sbjct: 82 LQLPSVKVGLDAIVRAGIEPVLFDAVRVEPTNESLQTAIDFARSHRFDAFVAIGGGSAID 141
Query: 122 TCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEP 181
TCK ANLY D EAEFLDYVN PIG+ K VTVPLKPLIA+PTT+GTGSETTGV+IFD++P
Sbjct: 142 TCKVANLYSADREAEFLDYVNVPIGRAKEVTVPLKPLIAVPTTAGTGSETTGVAIFDHKP 201
Query: 182 LKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPT 241
L AKTGI+++AL+P LGL+DPLHTLS PE+V AY GFDVFCHALESFTA+PYTER P P
Sbjct: 202 LHAKTGISSKALRPILGLVDPLHTLSQPEKVAAYCGFDVFCHALESFTAIPYTERGPAPA 261
Query: 242 DPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNA 301
+P LRP YQG NP+SDVWARFALQTI ++F+RAVY DDLEARS MHLAS MAGVGFGNA
Sbjct: 262 NPKLRPPYQGSNPISDVWARFALQTISRHFRRAVYAPDDLEARSQMHLASTMAGVGFGNA 321
Query: 302 GVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAA 361
GVHLCHGLSYPI+G VK F P GY+ HPIIPHGLSVVM+AP+VF FT AS P+RH+EAA
Sbjct: 322 GVHLCHGLSYPIAGLVKQFIPDGYTGAHPIIPHGLSVVMTAPSVFRFTGASCPDRHLEAA 381
Query: 362 ELLGADVSRVKKADA 376
+LGADV++ + DA
Sbjct: 382 GILGADVAKSHRNDA 396
|
Catalyzes the cofactor-independent reversible oxidation of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA) coupled to reduction of 2-ketoglutarate (2-KG) to D-2-hydroxyglutarate (D-2-HG). L-3-hydroxybutyrate (L-3-OHB) is also a substrate for HOT when using 2-KG as hydrogen acceptor, resulting in the formation of D-2-HG. Anopheles gambiae (taxid: 7165) EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 9 EC: . EC: 2 EC: 4 |
| >sp|A6QP15|HOT_BOVIN Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Bos taurus GN=ADHFE1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust.
Identities = 245/363 (67%), Positives = 299/363 (82%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
+YAFEMA STIR G GVT+EVGMD+ +M A+ VC+MTD +LS+L PV+ +DSL ++G+
Sbjct: 43 DYAFEMAVSTIRYGAGVTKEVGMDLQSMGAKNVCLMTDKNLSQLPPVQTVMDSLVKNGIN 102
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
F+++D VRVEPT SF+EA +F + DAF+AVGGGS IDTCKAANLY P+++FLDY
Sbjct: 103 FKVYDHVRVEPTDTSFMEAIEFAKKGAFDAFLAVGGGSTIDTCKAANLYSSSPDSDFLDY 162
Query: 141 VNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 200
VNAPIGKGKPVTVPLKPLIA+PTTSGTGSETTGV+IFDYE LK KTGIA+RA+KPTLGLI
Sbjct: 163 VNAPIGKGKPVTVPLKPLIAVPTTSGTGSETTGVAIFDYEHLKVKTGIASRAIKPTLGLI 222
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DPLHTL +PERV A SGFDV CHALES+TALPY R+PCP+ P+ RPAYQG NP+SD+WA
Sbjct: 223 DPLHTLHMPERVVANSGFDVLCHALESYTALPYHMRSPCPSSPITRPAYQGSNPISDIWA 282
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
AL+ + +Y KRA+ N DDLEARS+MHLASA AG+GFGNAGVHLCHG+SYPISG VKT+
Sbjct: 283 VHALRIVAKYLKRAIRNPDDLEARSNMHLASAFAGIGFGNAGVHLCHGMSYPISGLVKTY 342
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTT 380
Y+ DHP++PHGLSVV+++PAVF FT+ PERH+E AE+LGAD ++ DA P
Sbjct: 343 KAKDYNVDHPLVPHGLSVVLTSPAVFTFTSQMFPERHLEVAEILGADTRTARRPDAGPVL 402
Query: 381 SGT 383
+ T
Sbjct: 403 ADT 405
|
Catalyzes the cofactor-independent reversible oxidation of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA) coupled to reduction of 2-ketoglutarate (2-KG) to D-2-hydroxyglutarate (D-2-HG). L-3-hydroxybutyrate (L-3-OHB) is also a substrate for HOT when using 2-KG as hydrogen acceptor, resulting in the formation of D-2-HG. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 9 EC: . EC: 2 EC: 4 |
| >sp|Q4QQW3|HOT_RAT Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Rattus norvegicus GN=Adhfe1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 501 bits (1289), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/359 (67%), Positives = 297/359 (82%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
+YAFEMA S IR G GVT+EVGMD+ NM A+ VC+MTD +LS+L PV+ +DSL+++G+
Sbjct: 44 DYAFEMAVSNIRYGAGVTKEVGMDLQNMGAKNVCLMTDKNLSQLPPVQIVMDSLSKNGIS 103
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
F+++D VRVEPT SF++A +F + DA++AVGGGS +DTCKAANLY C P +EFLDY
Sbjct: 104 FQVYDNVRVEPTDGSFMDAIEFAKKGAFDAYVAVGGGSTMDTCKAANLYACSPHSEFLDY 163
Query: 141 VNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 200
VNAPIGKGKPVTVPLKPLIA+PTTSGTGSETTGV+IFDYE LK KTGIA+RA+KPTLGL+
Sbjct: 164 VNAPIGKGKPVTVPLKPLIAVPTTSGTGSETTGVAIFDYEHLKVKTGIASRAIKPTLGLV 223
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DPLHTL +P +V A SGFDV CHALES+TA+PY+ R+PCP++P+ RPAYQG NP+SD+WA
Sbjct: 224 DPLHTLHMPCQVVANSGFDVLCHALESYTAIPYSMRSPCPSNPIQRPAYQGSNPISDIWA 283
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
AL+ + +Y KRAV N DDLEARS MHLASA AG+GFGNAGVHLCHG+SYPISG VKT+
Sbjct: 284 VHALRIVAKYLKRAVRNPDDLEARSSMHLASAFAGIGFGNAGVHLCHGMSYPISGLVKTY 343
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPT 379
Y+ DHP++PHGLSVV+++PAVF FTA PERH+E AE+LGA++ K DA P
Sbjct: 344 KAKEYNVDHPLVPHGLSVVLTSPAVFTFTAQMFPERHLETAEILGANIRTAKIQDAGPV 402
|
Catalyzes the cofactor-independent reversible oxidation of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA) coupled to reduction of 2-ketoglutarate (2-KG) to D-2-hydroxyglutarate (D-2-HG). L-3-hydroxybutyrate (L-3-OHB) is also a substrate for HOT when using 2-KG as hydrogen acceptor, resulting in the formation of D-2-HG. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 9 EC: . EC: 2 EC: 4 |
| >sp|Q6P371|HOT_XENTR Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Xenopus tropicalis GN=adhfe1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/356 (68%), Positives = 296/356 (83%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
EYAFEMA S IR G VT+E+GMD+ N+ A+ VCVMTD +L +L+PVKA L+SL ++ V
Sbjct: 40 EYAFEMAVSNIRYGENVTQEIGMDLQNLGARNVCVMTDRNLVELSPVKAVLNSLVKNNVS 99
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
F+L+D+VRVEPT SF++A +F + Q DA++ VGGGSVIDTCKAANLY P A+FLDY
Sbjct: 100 FKLYDRVRVEPTDKSFMDAIEFAKKGQFDAYVGVGGGSVIDTCKAANLYSSSPGADFLDY 159
Query: 141 VNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 200
VN PIGKGK VTVPLKPLIA+PTTSGTGSETTG++IFDYE LKAKTGIA+RA+KPTLGLI
Sbjct: 160 VNPPIGKGKAVTVPLKPLIAVPTTSGTGSETTGIAIFDYEELKAKTGIASRAIKPTLGLI 219
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DP+HTLS+PERV A SGFDV CH+LES+TALPY R+PCPT+P+ RPAYQG NP+SDVWA
Sbjct: 220 DPVHTLSMPERVVANSGFDVLCHSLESYTALPYNMRSPCPTNPINRPAYQGSNPISDVWA 279
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
+ AL+ + +Y KRAV N DD EAR MHLAS+ AGVGFGNAGVHLCHG+SYPI+G+VKT+
Sbjct: 280 KHALRIVAKYLKRAVRNPDDREARFAMHLASSFAGVGFGNAGVHLCHGMSYPIAGHVKTY 339
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADA 376
Y DHP++PHGLSVV+++PAVF+FTA PERH+EAAE+LGAD+ K +A
Sbjct: 340 RAKDYEVDHPLVPHGLSVVLTSPAVFSFTALMCPERHLEAAEILGADIRTAKIKEA 395
|
Catalyzes the cofactor-independent reversible oxidation of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA) coupled to reduction of 2-ketoglutarate (2-KG) to D-2-hydroxyglutarate (D-2-HG). L-3-hydroxybutyrate (L-3-OHB) is also a substrate for HOT when using 2-KG as hydrogen acceptor, resulting in the formation of D-2-HG. Xenopus tropicalis (taxid: 8364) EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 9 EC: . EC: 2 EC: 4 |
| >sp|Q08B39|HOT_XENLA Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Xenopus laevis GN=adhfe1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/356 (67%), Positives = 296/356 (83%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
+YAFEMA S+IR G VT+E+GMD+ N + VCVMTD +LS+L+PVKA L+SL ++G+
Sbjct: 40 DYAFEMAVSSIRYGENVTQEIGMDLQNWGTRNVCVMTDRNLSELSPVKAVLNSLVKNGIN 99
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
F+L+D VRVEPT SF++A +F + Q DAF+AVGGGSVIDTCKAANLY P+++FLDY
Sbjct: 100 FKLYDSVRVEPTDKSFMDAIEFAKKGQFDAFVAVGGGSVIDTCKAANLYSSSPDSDFLDY 159
Query: 141 VNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 200
VN PIGKGK VTVPLKPLIA+PTTSGTGSETTG++IFDYE LKAKTGIA+RA+KPTLGLI
Sbjct: 160 VNPPIGKGKAVTVPLKPLIAVPTTSGTGSETTGIAIFDYEELKAKTGIASRAIKPTLGLI 219
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DP HTLS+PERV A SGFDV CH+LES+TALPY R+PCPT+P+ RPAYQG NP+SDVWA
Sbjct: 220 DPAHTLSMPERVVANSGFDVLCHSLESYTALPYNMRSPCPTNPINRPAYQGSNPISDVWA 279
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
+ AL+ + ++ KRAV N DD EAR MHLAS+ AGVGFGNAGVHLCHG+SYPI+G+VKT+
Sbjct: 280 KHALRIVAKFLKRAVRNPDDREARFAMHLASSFAGVGFGNAGVHLCHGMSYPIAGHVKTY 339
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADA 376
Y DHP++PHGLSVV+++PAVF+FT PERH+EAAE+LGAD+ K DA
Sbjct: 340 RAKDYKVDHPLVPHGLSVVLTSPAVFSFTGLMCPERHLEAAEILGADLRTAKIKDA 395
|
Catalyzes the cofactor-independent reversible oxidation of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA) coupled to reduction of 2-ketoglutarate (2-KG) to D-2-hydroxyglutarate (D-2-HG). L-3-hydroxybutyrate (L-3-OHB) is also a substrate for HOT when using 2-KG as hydrogen acceptor, resulting in the formation of D-2-HG. Xenopus laevis (taxid: 8355) EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 9 EC: . EC: 2 EC: 4 |
| >sp|Q28XT3|HOT_DROPS Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA17444 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 494 bits (1271), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/360 (67%), Positives = 296/360 (82%)
Query: 17 TPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTR 76
T KEYAFEM++ST+R GPGV+ EVG D+ N+ A++VC++TD +++KL VK LDSL R
Sbjct: 37 TGQKEYAFEMSASTVRFGPGVSVEVGADLRNLGAKKVCLVTDRNVAKLPSVKVALDSLAR 96
Query: 77 HGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAE 136
HG+ +E++D+ RVEPT S A + R + DAF+A+GGGSV+DT KAANL+ D EAE
Sbjct: 97 HGINYEVYDETRVEPTDASLWHAADYARQNEFDAFLAIGGGSVMDTAKAANLFSSDREAE 156
Query: 137 FLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPT 196
FLDYVN PIGKGK ++V LKPLIA+PTTSGTGSETTGV+IFDY+ L AKTGI+++ LKPT
Sbjct: 157 FLDYVNCPIGKGKEISVKLKPLIAMPTTSGTGSETTGVAIFDYKRLHAKTGISSKYLKPT 216
Query: 197 LGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVS 256
L +IDPLHTLS PERV A++GFDVFCHALESFTA+ Y ER P P+DP LRP YQG+NP+S
Sbjct: 217 LAIIDPLHTLSQPERVMAFAGFDVFCHALESFTAVDYRERGPAPSDPSLRPTYQGRNPIS 276
Query: 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGN 316
DVWARFAL+TIR+ F A+Y +LEARS MHLAS MAGVGFGNAGVHLCHGLSYPISGN
Sbjct: 277 DVWARFALETIRKNFINAIYEPGNLEARSQMHLASTMAGVGFGNAGVHLCHGLSYPISGN 336
Query: 317 VKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADA 376
V+ + PAGY+ DH +IPHGLSVV+SAPAVF FTA + P+RH+EAA+LLGA V V+ +DA
Sbjct: 337 VRNYKPAGYTADHALIPHGLSVVISAPAVFEFTAPACPDRHLEAAKLLGAKVDGVRASDA 396
|
Catalyzes the cofactor-independent reversible oxidation of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA) coupled to reduction of 2-ketoglutarate (2-KG) to D-2-hydroxyglutarate (D-2-HG). L-3-hydroxybutyrate (L-3-OHB) is also a substrate for HOT when using 2-KG as hydrogen acceptor, resulting in the formation of D-2-HG. Drosophila pseudoobscura pseudoobscura (taxid: 46245) EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 9 EC: . EC: 2 EC: 4 |
| >sp|Q8R0N6|HOT_MOUSE Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Mus musculus GN=Adhfe1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/356 (66%), Positives = 294/356 (82%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
+YAFEMA S IR G GVT+EVGMD+ NM A+ VC+MTD +LS+L PV+ +DSL+++G+
Sbjct: 42 DYAFEMAVSNIRYGAGVTKEVGMDLQNMGAKNVCLMTDKNLSQLPPVQIVMDSLSKNGIS 101
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
F+++D VRVEPT SF++A +F + DA++AVGGGS +DTCKAANLY P +EFLDY
Sbjct: 102 FQVYDDVRVEPTDGSFMDAIEFAKKGAFDAYVAVGGGSTMDTCKAANLYASSPHSEFLDY 161
Query: 141 VNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 200
VNAPIGKGKPVTVPLKPLIA+PTTSGTGSETTGV+IFDYE LK KTGIA+RA+KPTLGL+
Sbjct: 162 VNAPIGKGKPVTVPLKPLIAVPTTSGTGSETTGVAIFDYEHLKVKTGIASRAIKPTLGLV 221
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DPLHTL +P +V A SGFDV CHALES+TA+PY+ R+PCP++P+ RPAYQG NP+SD+WA
Sbjct: 222 DPLHTLHMPCQVVANSGFDVLCHALESYTAIPYSMRSPCPSNPIQRPAYQGSNPISDIWA 281
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
ALQ + +Y KRAV N DDLEARS MHLASA AG+GFGNAGVHLCHG+SYPISG VKT+
Sbjct: 282 VHALQIVAKYLKRAVRNPDDLEARSKMHLASAFAGIGFGNAGVHLCHGMSYPISGLVKTY 341
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADA 376
Y+ DHP++PHGLSVV+++PAVF FTA PERH+E A +LGA++ + DA
Sbjct: 342 KAKEYNVDHPLVPHGLSVVLTSPAVFTFTAQMFPERHLETAGILGANIRTARIQDA 397
|
Catalyzes the cofactor-independent reversible oxidation of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA) coupled to reduction of 2-ketoglutarate (2-KG) to D-2-hydroxyglutarate (D-2-HG). L-3-hydroxybutyrate (L-3-OHB) is also a substrate for HOT when using 2-KG as hydrogen acceptor, resulting in the formation of D-2-HG. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 9 EC: . EC: 2 EC: 4 |
| >sp|Q5RF11|HOT_PONAB Hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Pongo abelii GN=ADHFE1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 489 bits (1260), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/356 (67%), Positives = 289/356 (81%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
+YAFEMA S IR G GVT+EVGMD+ NM A+ VC+MTD +LSKL PV+ +DSL ++G+
Sbjct: 44 DYAFEMAVSNIRYGAGVTKEVGMDLQNMGAKNVCLMTDKNLSKLPPVQVAMDSLVKNGIP 103
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
F ++D VRVEPT SF+EA +F + DA++AVGGGS +DTC AANLY P ++FLDY
Sbjct: 104 FTVYDNVRVEPTDASFMEAIEFAQKGAFDAYVAVGGGSTMDTCMAANLYASSPHSDFLDY 163
Query: 141 VNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 200
V+APIGKGKPV+VPLKPLIA+PTTSGTGSETTGV+IFDYE LK K GIA+RA+KPTLGLI
Sbjct: 164 VSAPIGKGKPVSVPLKPLIAVPTTSGTGSETTGVAIFDYEHLKVKIGIASRAIKPTLGLI 223
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DPLHTL +P RV A SGFDV CHALES+T LPY R+PCP++P+ RPAYQG NP+SD+WA
Sbjct: 224 DPLHTLHMPARVVANSGFDVLCHALESYTTLPYHLRSPCPSNPITRPAYQGSNPISDIWA 283
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
AL+ + +Y KRAV N DDLEARSHMHLASA AG+GFGNAGVHLCHG+SYPISG VKT+
Sbjct: 284 IHALRIVAKYLKRAVRNPDDLEARSHMHLASAFAGIGFGNAGVHLCHGMSYPISGLVKTY 343
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADA 376
Y+ DHP++PHGLSVV+++PAVF FTA PERH+E AE+LGAD + DA
Sbjct: 344 KAKDYNVDHPLVPHGLSVVLTSPAVFTFTAQMFPERHLETAEILGADTRTARIQDA 399
|
Catalyzes the cofactor-independent reversible oxidation of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA) coupled to reduction of 2-ketoglutarate (2-KG) to D-2-hydroxyglutarate (D-2-HG). L-3-hydroxybutyrate (L-3-OHB) is also a substrate for HOT when using 2-KG as hydrogen acceptor, resulting in the formation of D-2-HG. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 9 EC: . EC: 2 EC: 4 |
| >sp|Q9W265|HOT_DROME Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial OS=Drosophila melanogaster GN=T3dh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1251), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/356 (66%), Positives = 293/356 (82%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
EYAFEM++ST+R GPGV+ EVG D+ N+ A++VC++TD ++ +L VK LDSL R+G+
Sbjct: 41 EYAFEMSASTVRFGPGVSAEVGADLRNLGARKVCLVTDKNVVQLPSVKVALDSLARNGIN 100
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
+E++D+ RVEPT S A +F R + DAF+A+GGGS +DT KAANL+ D AEFLDY
Sbjct: 101 YEVYDETRVEPTDGSMWHAVEFARGKEFDAFLAIGGGSAMDTAKAANLFSSDANAEFLDY 160
Query: 141 VNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 200
VN PIG+GK ++V LKPLIA+PTTSGTGSETTGV+IFDY+ L AKTGI+++ LKPTL +I
Sbjct: 161 VNCPIGRGKEISVKLKPLIAMPTTSGTGSETTGVAIFDYKKLHAKTGISSKFLKPTLAVI 220
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DPLHTLS P+RV A++GFDVFCHALESFTA+ Y ER P+DP LRP YQG+NPVSDVWA
Sbjct: 221 DPLHTLSQPQRVMAFAGFDVFCHALESFTAVDYRERGLAPSDPSLRPTYQGRNPVSDVWA 280
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
RFAL+TIR+ F A+Y D+LEARS MHLAS MAGVGFGNAGVHLCHGLSYPISGNV+ +
Sbjct: 281 RFALETIRKNFVNAIYQPDNLEARSQMHLASTMAGVGFGNAGVHLCHGLSYPISGNVRDY 340
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADA 376
P GYS DH +IPHGLSVV+SAPAVF FTA + P+RH+EAA+LLGA+V V+KADA
Sbjct: 341 KPKGYSADHALIPHGLSVVISAPAVFEFTAPACPDRHLEAAQLLGAEVRGVEKADA 396
|
Catalyzes the cofactor-independent reversible oxidation of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA) coupled to reduction of 2-ketoglutarate (2-KG) to D-2-hydroxyglutarate (D-2-HG). L-3-hydroxybutyrate (L-3-OHB) is also a substrate for HOT when using 2-KG as hydrogen acceptor, resulting in the formation of D-2-HG. Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 9 EC: . EC: 2 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 660 | ||||||
| 322794749 | 473 | hypothetical protein SINV_01501 [Solenop | 0.604 | 0.843 | 0.704 | 1e-163 | |
| 332026366 | 473 | Putative hydroxyacid-oxoacid transhydrog | 0.554 | 0.773 | 0.751 | 1e-162 | |
| 91092172 | 466 | PREDICTED: similar to Type III alcohol d | 0.575 | 0.815 | 0.744 | 1e-161 | |
| 307198665 | 419 | Probable hydroxyacid-oxoacid transhydrog | 0.546 | 0.861 | 0.761 | 1e-160 | |
| 307181616 | 473 | Probable hydroxyacid-oxoacid transhydrog | 0.559 | 0.780 | 0.728 | 1e-159 | |
| 383850997 | 473 | PREDICTED: probable hydroxyacid-oxoacid | 0.559 | 0.780 | 0.731 | 1e-156 | |
| 380017627 | 471 | PREDICTED: probable hydroxyacid-oxoacid | 0.557 | 0.781 | 0.737 | 1e-156 | |
| 193627234 | 463 | PREDICTED: probable hydroxyacid-oxoacid | 0.557 | 0.794 | 0.747 | 1e-156 | |
| 340719960 | 472 | PREDICTED: probable hydroxyacid-oxoacid | 0.562 | 0.786 | 0.719 | 1e-153 | |
| 350410424 | 472 | PREDICTED: probable hydroxyacid-oxoacid | 0.565 | 0.790 | 0.712 | 1e-152 |
| >gi|322794749|gb|EFZ17696.1| hypothetical protein SINV_01501 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 289/410 (70%), Positives = 336/410 (81%), Gaps = 11/410 (2%)
Query: 8 RLLSDMSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPV 67
+ S +N T DKEYAFEMA ST+R G GVTRE+GMD+ N+ A++ C+MTDP+L KLAPV
Sbjct: 37 KAWSTAANATADKEYAFEMACSTVRYGIGVTRELGMDIQNLGAKKTCLMTDPNLVKLAPV 96
Query: 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAAN 127
K ++SL+++GV+FE++DKVRVEPT S ++ +F + DAFIAVGGGSV+DTCKAAN
Sbjct: 97 KTAINSLSKYGVQFEIYDKVRVEPTEQSLQDSIEFAKRGNFDAFIAVGGGSVMDTCKAAN 156
Query: 128 LYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187
LY CDP+AEFLDYVNAPIGKG P+ VPLKPLIA+PTTSGTGSETTGVSIFDY PLKAKTG
Sbjct: 157 LYSCDPDAEFLDYVNAPIGKGNPIRVPLKPLIAVPTTSGTGSETTGVSIFDYRPLKAKTG 216
Query: 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRP 247
IANR+L+PTLG+IDP HTL+LPERV AYSGFDV CHALESFTA+PYTERTPCP +P+LRP
Sbjct: 217 IANRSLRPTLGIIDPQHTLTLPERVCAYSGFDVLCHALESFTAIPYTERTPCPANPILRP 276
Query: 248 AYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCH 307
AYQG NPVSDVWAR+ALQ + +YFKRAVYNQDDLEARSHMHLAS MAGVGFGNAGVHLCH
Sbjct: 277 AYQGSNPVSDVWARYALQVMCKYFKRAVYNQDDLEARSHMHLASTMAGVGFGNAGVHLCH 336
Query: 308 GLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367
GLSYPISGNV+ F P GYS+DHPIIPHGLSVV+SAPAVF+FT + PERH+EAAELLGAD
Sbjct: 337 GLSYPISGNVRNFQPKGYSNDHPIIPHGLSVVISAPAVFSFTGNACPERHLEAAELLGAD 396
Query: 368 VSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALK----PTL 413
V K+ADA + T E V +K + G+ K PTL
Sbjct: 397 VKNAKRADAGKILADTVKEYMRV-------MKVENGLTELGFKKEDIPTL 439
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332026366|gb|EGI66495.1| Putative hydroxyacid-oxoacid transhydrogenase, mitochondrial [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 275/366 (75%), Positives = 323/366 (88%)
Query: 11 SDMSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKAT 70
S +N T DKEYAFEMA ST+R G GVTRE+GMD+ N+ A++ C+MTDP+L LAPVK
Sbjct: 40 STAANITTDKEYAFEMACSTVRYGVGVTRELGMDIQNLGAKKTCLMTDPNLINLAPVKTA 99
Query: 71 LDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130
+DSL+++G++FE++D+VRVEPT S ++ +F + DAF+AVGGGSV+DTCKAANLY
Sbjct: 100 IDSLSKYGIQFEIYDQVRVEPTEQSLQDSIEFAKRENFDAFVAVGGGSVMDTCKAANLYS 159
Query: 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIAN 190
CDP AEFLDYVNAPIGKGKP+ VPLKPLIA+PTTSGTGSETTGVSIFDY PLKAKTGIAN
Sbjct: 160 CDPNAEFLDYVNAPIGKGKPIRVPLKPLIAVPTTSGTGSETTGVSIFDYRPLKAKTGIAN 219
Query: 191 RALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQ 250
R+L+PTLG+IDP HTL+LPERV AYSGFDV CHALESFTA+PYTERTPCP++P+LRPAYQ
Sbjct: 220 RSLRPTLGIIDPKHTLTLPERVCAYSGFDVLCHALESFTAIPYTERTPCPSNPILRPAYQ 279
Query: 251 GQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLS 310
G NPVSDVWAR+ALQ +R+YF+RAVYNQ+DLEARSHMHLAS MAGVGFGNAGVHLCHGLS
Sbjct: 280 GSNPVSDVWARYALQVMRKYFERAVYNQEDLEARSHMHLASTMAGVGFGNAGVHLCHGLS 339
Query: 311 YPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSR 370
YPISGNV+ F P GYS+DH IIPHGLSVV+SAPAVF+FT ++ P+RH+EAAELLGADV
Sbjct: 340 YPISGNVRNFQPKGYSNDHSIIPHGLSVVISAPAVFSFTGSACPDRHLEAAELLGADVKN 399
Query: 371 VKKADA 376
K+ADA
Sbjct: 400 AKQADA 405
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91092172|ref|XP_968236.1| PREDICTED: similar to Type III alcohol dehydrogenase CG3425-PA [Tribolium castaneum] gi|270014470|gb|EFA10918.1| hypothetical protein TcasGA2_TC001744 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 283/380 (74%), Positives = 322/380 (84%)
Query: 11 SDMSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKAT 70
S + N P KEYAFEM+SST+R GPGVT+EVGMD+VNM+A+ VCV+TDP L+KL PV+AT
Sbjct: 33 STVPNALPSKEYAFEMSSSTVRYGPGVTQEVGMDIVNMRAKNVCVVTDPKLAKLPPVQAT 92
Query: 71 LDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130
LDSLT++ V+F+++D+VRVEPT +S L A F +S DAFIAVGGGSVIDT KAANLY
Sbjct: 93 LDSLTKNNVQFQVYDQVRVEPTEESLLHAANFAKSSNFDAFIAVGGGSVIDTAKAANLYA 152
Query: 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIAN 190
C+P+AEFLDYVNAPIGK KP+ PLKPLIAIPTTSGTGSETTGVSIFDY+PL AKTGI++
Sbjct: 153 CNPDAEFLDYVNAPIGKAKPIEKPLKPLIAIPTTSGTGSETTGVSIFDYKPLHAKTGISH 212
Query: 191 RALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQ 250
+AL+PTLGLIDPLHTLSLPE+V AYSGFDVFCHALESFTA+PY ER PCP++P LRP YQ
Sbjct: 213 KALRPTLGLIDPLHTLSLPEKVAAYSGFDVFCHALESFTAIPYNERKPCPSNPALRPTYQ 272
Query: 251 GQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLS 310
GQNP+SDVWAR+AL I++YFKRAVY DDLEARS MHLAS MAGVGFGNAGVHLCHGLS
Sbjct: 273 GQNPISDVWARYALNIIKKYFKRAVYQPDDLEARSAMHLASTMAGVGFGNAGVHLCHGLS 332
Query: 311 YPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSR 370
YPISGNV+TF P Y DDH IIPHGLSVVMSAPAVF FTA + PERH+EAAE+LG DV
Sbjct: 333 YPISGNVRTFKPKDYDDDHAIIPHGLSVVMSAPAVFQFTAPACPERHLEAAEVLGTDVRN 392
Query: 371 VKKADAVPTTSGTGSETTGV 390
KKADA S T E V
Sbjct: 393 AKKADAGKILSETMREYMNV 412
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307198665|gb|EFN79501.1| Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 275/361 (76%), Positives = 315/361 (87%)
Query: 26 MASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFD 85
MA ST+R G GVTRE+GMD+ NM+A+++C+MTDPHL LAPVK +DSL +HGV FE++D
Sbjct: 1 MACSTVRYGVGVTRELGMDIQNMRAKKICLMTDPHLVNLAPVKTAIDSLAKHGVHFEIYD 60
Query: 86 KVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPI 145
KVRVEPT S ++ +F + DAF+AVGGGSV+DTCKAANLY CDP+AEFLDYVNAPI
Sbjct: 61 KVRVEPTEQSLQDSIEFAKRGNFDAFVAVGGGSVMDTCKAANLYSCDPDAEFLDYVNAPI 120
Query: 146 GKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHT 205
GKGKP+ VPLKPLIA+PTTSGTGSETTGVSIFDY PLKAKTGIANRAL+PTLG+IDP HT
Sbjct: 121 GKGKPIQVPLKPLIAVPTTSGTGSETTGVSIFDYRPLKAKTGIANRALRPTLGIIDPQHT 180
Query: 206 LSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQ 265
L+LPE+V AYSGFDV CHALESFTA+PYTERTPCPT+P+LRPAYQG NPVSDVWAR+ALQ
Sbjct: 181 LTLPEKVCAYSGFDVLCHALESFTAIPYTERTPCPTNPILRPAYQGSNPVSDVWARYALQ 240
Query: 266 TIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGY 325
+R+YF+RAVY QDDLEARSHMHLAS MAGVGFGNAGVHLCHGLSYPISGNV+TF P GY
Sbjct: 241 VMRKYFQRAVYKQDDLEARSHMHLASTMAGVGFGNAGVHLCHGLSYPISGNVRTFQPEGY 300
Query: 326 SDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGS 385
S DHPIIPHGLSVV+SAPAVF+FT + PERH+EAAELLGA+V K+ADA + T
Sbjct: 301 SKDHPIIPHGLSVVISAPAVFSFTGNACPERHLEAAELLGANVKSAKQADAGKILADTVK 360
Query: 386 E 386
E
Sbjct: 361 E 361
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307181616|gb|EFN69156.1| Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 269/369 (72%), Positives = 320/369 (86%)
Query: 8 RLLSDMSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPV 67
+ S +N PDKEYAFEMA S++R G GVTRE+GMDM N+ A+R C+MTD +L L+PV
Sbjct: 37 KTWSTATNILPDKEYAFEMACSSVRYGIGVTRELGMDMQNLGAKRTCLMTDSNLVTLSPV 96
Query: 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAAN 127
K +DSL ++G++FE++DKVRVEPT S E+ +F + DAF+AVGGGSV+DTCKAAN
Sbjct: 97 KTAIDSLVKYGIQFEIYDKVRVEPTEQSLQESIEFAKRGNFDAFVAVGGGSVMDTCKAAN 156
Query: 128 LYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187
LY C+P+AEFLDYVNAPIGKGKP+ +PLKPL+A+PTTSGTGSETTGV+IFDY PLKAKTG
Sbjct: 157 LYSCNPDAEFLDYVNAPIGKGKPIQIPLKPLVAVPTTSGTGSETTGVAIFDYRPLKAKTG 216
Query: 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRP 247
IANRAL+P LGLIDP HTL+LPE+V AYSGFDV CHALESFTA+PYTERTPCP++P+LRP
Sbjct: 217 IANRALRPILGLIDPQHTLTLPEKVCAYSGFDVLCHALESFTAIPYTERTPCPSNPILRP 276
Query: 248 AYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCH 307
AYQG NP+SDVWAR+ALQ +R+YFKRAVYN +DLEARS MHLAS MAGVGFGNAGVHLCH
Sbjct: 277 AYQGSNPISDVWARYALQIMRKYFKRAVYNSNDLEARSSMHLASTMAGVGFGNAGVHLCH 336
Query: 308 GLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367
GLSYPISGNV+ F P GYS+DHPI+PHGLSVV+SAPAVF+F ++ PE+H+EAAELLGAD
Sbjct: 337 GLSYPISGNVRNFQPKGYSNDHPIVPHGLSVVISAPAVFSFIGSACPEKHLEAAELLGAD 396
Query: 368 VSRVKKADA 376
V K+ADA
Sbjct: 397 VKNAKRADA 405
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383850997|ref|XP_003701050.1| PREDICTED: probable hydroxyacid-oxoacid transhydrogenase, mitochondrial-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/369 (73%), Positives = 316/369 (85%)
Query: 8 RLLSDMSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPV 67
+ S ++N TP KEYAFEMA ST+R G GVT+E+GMDM N ++ VC+MTD +L L PV
Sbjct: 37 KACSTVTNTTPTKEYAFEMACSTVRYGVGVTKELGMDMQNFGSKSVCLMTDSNLVNLPPV 96
Query: 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAAN 127
K +DSLT+HG++ ++D VRVEPT S +A +FV+ DAFIAVGGGSV+DTCKAAN
Sbjct: 97 KTAMDSLTKHGIQTTVYDNVRVEPTEQSLKDAIEFVKQKNFDAFIAVGGGSVMDTCKAAN 156
Query: 128 LYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187
LY DPEA+FLDYVNAPIGKGKP++V LKPLIAIPTTSGTGSETTGVSIFDY+PL AKTG
Sbjct: 157 LYSSDPEADFLDYVNAPIGKGKPISVSLKPLIAIPTTSGTGSETTGVSIFDYQPLHAKTG 216
Query: 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRP 247
IANRAL+PTLGLIDP HTLS+PERV AYSGFDV CHALESFTALPYTERTPCP +P+LRP
Sbjct: 217 IANRALRPTLGLIDPHHTLSMPERVCAYSGFDVLCHALESFTALPYTERTPCPPNPILRP 276
Query: 248 AYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCH 307
AYQG NP+SDVW+R+ALQ +R+YF+RAVYNQDDLEARS+MHLAS MAGVGFGNAGVHLCH
Sbjct: 277 AYQGSNPISDVWSRYALQIMRKYFERAVYNQDDLEARSYMHLASTMAGVGFGNAGVHLCH 336
Query: 308 GLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367
LSYPISGNV++F P GYS DHPI+PHGLSVV+SAPAVF+FT + +RH+EAAELLG D
Sbjct: 337 ALSYPISGNVRSFQPEGYSKDHPIVPHGLSVVISAPAVFSFTGDACADRHLEAAELLGTD 396
Query: 368 VSRVKKADA 376
+ K++DA
Sbjct: 397 THKAKRSDA 405
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380017627|ref|XP_003692753.1| PREDICTED: probable hydroxyacid-oxoacid transhydrogenase, mitochondrial-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/369 (73%), Positives = 318/369 (86%), Gaps = 1/369 (0%)
Query: 8 RLLSDMSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPV 67
++ S ++N T KEYAFEMASST+R G GVTRE+GMDM N ++ VC+MTD +L L PV
Sbjct: 36 KVQSTVANATLIKEYAFEMASSTVRYGIGVTRELGMDMQNFGSKNVCLMTDSNLINLPPV 95
Query: 68 KATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAAN 127
K +DSLT+HG++ ++D VRVEPT S ++ +FV+ + DAFIA+GGGSVIDTCK AN
Sbjct: 96 KTAMDSLTKHGIQTSVYDNVRVEPTEQSLKDSIEFVKHGKFDAFIAIGGGSVIDTCKVAN 155
Query: 128 LYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187
LY DP+A+FLDYVNAPIGKGKPVTV LKPLIA+PTTSGTGSETTGVSIFDY+PLKAKTG
Sbjct: 156 LYSSDPQADFLDYVNAPIGKGKPVTVQLKPLIAVPTTSGTGSETTGVSIFDYQPLKAKTG 215
Query: 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRP 247
IANRALKPTLGLIDP HTLSLPERV AYSGFDV CHALESFTALPYTERT CP++P+LRP
Sbjct: 216 IANRALKPTLGLIDPNHTLSLPERVCAYSGFDVLCHALESFTALPYTERT-CPSNPILRP 274
Query: 248 AYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCH 307
AYQG NP+SDVW+++AL+ + +YFKRAVYNQDDLEARS+MHLAS MAGVGFGNAGVHLCH
Sbjct: 275 AYQGSNPISDVWSKYALRIMHKYFKRAVYNQDDLEARSNMHLASTMAGVGFGNAGVHLCH 334
Query: 308 GLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367
LSYPISGNV+ F P GYS DHPI+PHGLSVV++APAVF+FT + ERH+EAAELLG D
Sbjct: 335 ALSYPISGNVRNFQPMGYSKDHPIVPHGLSVVITAPAVFSFTGNACAERHLEAAELLGTD 394
Query: 368 VSRVKKADA 376
+SR KK+DA
Sbjct: 395 ISRAKKSDA 403
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193627234|ref|XP_001952147.1| PREDICTED: probable hydroxyacid-oxoacid transhydrogenase, mitochondrial-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 275/368 (74%), Positives = 313/368 (85%)
Query: 9 LLSDMSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVK 68
L S +S KEYAFEMA STIR GPGVT+E+GMDMVNM+A+RVCVMTD +L L PVK
Sbjct: 28 LPSRLSTSVDQKEYAFEMACSTIRYGPGVTKELGMDMVNMQAKRVCVMTDSNLVNLPPVK 87
Query: 69 ATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANL 128
A LDSLT+ G+K++L+DK+RVEP S AT FVR+++ DAFIAVGGGSV+DTCKAANL
Sbjct: 88 AVLDSLTKSGIKYDLYDKIRVEPNEKSLEAATNFVRNLEFDAFIAVGGGSVMDTCKAANL 147
Query: 129 YYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGI 188
YY DPEAE LDYVN PIGKGKPVTVPLKPLIA+PTT+GTGSETTGV IFDYE LKAKTGI
Sbjct: 148 YYSDPEAELLDYVNPPIGKGKPVTVPLKPLIAVPTTTGTGSETTGVCIFDYEKLKAKTGI 207
Query: 189 ANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPA 248
ANRAL+PTLG++DPLH L PERV A+SGFDVF HALESFTA+PY ER+P PT+P+LRPA
Sbjct: 208 ANRALRPTLGIVDPLHALCQPERVCAFSGFDVFGHALESFTAVPYNERSPRPTNPILRPA 267
Query: 249 YQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHG 308
YQG+NP+SDVWAR+AL IR+YFKRAV++ +D EARS MHLAS MAGVGFGNAGVHLCH
Sbjct: 268 YQGRNPISDVWARYALDVIRKYFKRAVFDPEDFEARSSMHLASTMAGVGFGNAGVHLCHA 327
Query: 309 LSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 368
LSYPISGNVK + Y DHPIIPHGLSV+MS PAVF FT+ +SPERHIE A+LLGADV
Sbjct: 328 LSYPISGNVKQYQVTDYVTDHPIIPHGLSVIMSGPAVFEFTSPASPERHIEGAKLLGADV 387
Query: 369 SRVKKADA 376
S VK ADA
Sbjct: 388 SGVKNADA 395
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340719960|ref|XP_003398412.1| PREDICTED: probable hydroxyacid-oxoacid transhydrogenase, mitochondrial-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 269/374 (71%), Positives = 315/374 (84%), Gaps = 3/374 (0%)
Query: 3 EARPLRLLSDMSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLS 62
E R R S ++N P KEYAFEMA ST+R G GVT+E+GMDM N ++ VC+MTD +L
Sbjct: 34 ELRKAR--STIANAIPAKEYAFEMACSTVRYGVGVTKELGMDMQNFNSKNVCLMTDSNLI 91
Query: 63 KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDT 122
L P K +DSLT++G++ ++D VRVEPT S ++ +F + Q DAFIAVGGGSV+DT
Sbjct: 92 NLPPFKTAMDSLTKYGIQTTVYDSVRVEPTEQSLKDSIEFAKRGQFDAFIAVGGGSVMDT 151
Query: 123 CKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPL 182
CKAANLY DP+A+FLDYVNAPIGKGKP+TVPLKPLIA+PTTSGTGSETTGVSIFDY+PL
Sbjct: 152 CKAANLYSSDPQADFLDYVNAPIGKGKPITVPLKPLIAVPTTSGTGSETTGVSIFDYQPL 211
Query: 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTD 242
KAKTGIANRAL+PTLGLIDP HTLS+PERV AYSGFDVFCHALESFTA+PYTER CP +
Sbjct: 212 KAKTGIANRALRPTLGLIDPNHTLSMPERVCAYSGFDVFCHALESFTAIPYTERA-CPPN 270
Query: 243 PLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAG 302
P+LRPAYQG NP+SDVWA++ALQ I +YFKRAVYNQDD+EARS+MHLAS MAGVGFGNAG
Sbjct: 271 PILRPAYQGSNPISDVWAKYALQIICKYFKRAVYNQDDIEARSNMHLASTMAGVGFGNAG 330
Query: 303 VHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 362
VHLCH LSY ISGNV F P GY+ DHPI+PHGLSVV+SAPAVF+FT ERH+EAAE
Sbjct: 331 VHLCHALSYSISGNVHNFQPEGYNKDHPIVPHGLSVVISAPAVFSFTGNGCAERHLEAAE 390
Query: 363 LLGADVSRVKKADA 376
LLGAD++R K++DA
Sbjct: 391 LLGADINRAKRSDA 404
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350410424|ref|XP_003489041.1| PREDICTED: probable hydroxyacid-oxoacid transhydrogenase, mitochondrial-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/376 (71%), Positives = 315/376 (83%), Gaps = 3/376 (0%)
Query: 1 MAEARPLRLLSDMSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPH 60
M E R R S ++N P KEYAFEMA ST+R G GVT+E+GMDM N ++ VC+MTD +
Sbjct: 32 MYELRKAR--STVANAIPAKEYAFEMACSTVRYGVGVTKELGMDMQNFNSKNVCLMTDSN 89
Query: 61 LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI 120
L L P K +DSLT++G++ ++D VRVEPT S ++ +F + Q DAFIAVGGGSV+
Sbjct: 90 LINLPPFKTAMDSLTKYGIQTTVYDSVRVEPTEQSLKDSIEFAKRGQFDAFIAVGGGSVM 149
Query: 121 DTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180
DTCKAANLY DP+A+ LDYVN PIGKGKP+TVPLKPLIA+PTTSGTGSETTGVSIFDY+
Sbjct: 150 DTCKAANLYSSDPQADLLDYVNPPIGKGKPITVPLKPLIAVPTTSGTGSETTGVSIFDYQ 209
Query: 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCP 240
PLKAKTGIANRAL+PTLGLIDP HTLS+PERV AYSGFDV CHALESFTA+PYTER CP
Sbjct: 210 PLKAKTGIANRALRPTLGLIDPNHTLSMPERVCAYSGFDVLCHALESFTAIPYTERA-CP 268
Query: 241 TDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGN 300
++P+LRPAYQG NP+SDVWA++ALQ + +YFKRAVYNQDDLEARS+MHLAS MAGVGFGN
Sbjct: 269 SNPILRPAYQGSNPISDVWAKYALQIMCKYFKRAVYNQDDLEARSNMHLASTMAGVGFGN 328
Query: 301 AGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEA 360
AGVHLCH LSY ISGNV F P GY+ DHPI+PHGLSVV+SAPAVF+FT + ERH+EA
Sbjct: 329 AGVHLCHALSYSISGNVHNFQPEGYNKDHPIVPHGLSVVISAPAVFSFTGSGCAERHLEA 388
Query: 361 AELLGADVSRVKKADA 376
AELLGAD++R KK+DA
Sbjct: 389 AELLGADINRAKKSDA 404
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 660 | ||||||
| UNIPROTKB|Q17EN4 | 462 | AAEL003729 "Probable hydroxyac | 0.548 | 0.783 | 0.662 | 1.3e-130 | |
| UNIPROTKB|A6QP15 | 466 | ADHFE1 "Hydroxyacid-oxoacid tr | 0.542 | 0.768 | 0.648 | 3.2e-129 | |
| UNIPROTKB|F1PRA0 | 467 | ADHFE1 "Uncharacterized protei | 0.542 | 0.766 | 0.648 | 4e-129 | |
| ZFIN|ZDB-GENE-040426-2070 | 509 | adhfe1 "alcohol dehydrogenase, | 0.539 | 0.699 | 0.660 | 1.4e-128 | |
| UNIPROTKB|F1MAZ7 | 466 | ADHFE1 "Hydroxyacid-oxoacid tr | 0.542 | 0.768 | 0.645 | 1.4e-128 | |
| UNIPROTKB|Q7Q547 | 464 | AGAP006646 "Probable hydroxyac | 0.566 | 0.806 | 0.64 | 1.7e-128 | |
| RGD|1308863 | 467 | Adhfe1 "alcohol dehydrogenase, | 0.542 | 0.766 | 0.639 | 4.6e-128 | |
| UNIPROTKB|Q6P371 | 463 | adhfe1 "Hydroxyacid-oxoacid tr | 0.540 | 0.771 | 0.646 | 9.6e-128 | |
| UNIPROTKB|Q08B39 | 463 | adhfe1 "Hydroxyacid-oxoacid tr | 0.539 | 0.768 | 0.648 | 1.2e-127 | |
| UNIPROTKB|F1NZ93 | 427 | ADHFE1 "Uncharacterized protei | 0.540 | 0.836 | 0.635 | 2.6e-127 |
| UNIPROTKB|Q17EN4 AAEL003729 "Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
Identities = 240/362 (66%), Positives = 289/362 (79%)
Query: 15 NPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSL 74
N + + EYAFEM+SSTIR GPGV++E+G D+ N+ A+ VC++TD +++KL VK DSL
Sbjct: 33 NVSSENEYAFEMSSSTIRYGPGVSKELGHDLQNLNAKNVCIVTDRNVAKLNSVKVAFDSL 92
Query: 75 TRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPE 134
TR G++++++D+ RVEPT S L A ++ R + D+F+A+GGGSVIDTCK ANL+ D E
Sbjct: 93 TRCGIQYQVYDETRVEPTDQSLLHAAEYARQNKFDSFVAIGGGSVIDTCKVANLFSADRE 152
Query: 135 AEFLDYVNAPIGKGKPVTVPLKPLIAIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALK 194
AEFLDYVNAPIGK K V V LKPLIA+P IFDY+PL AKTGI+++ L+
Sbjct: 153 AEFLDYVNAPIGKAKEVNVKLKPLIAVPTTAGTGSETTGVVIFDYKPLHAKTGISSKYLR 212
Query: 195 PTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP 254
P LGLIDPLHTLS PE+V AY GFDVFCHALESFTA+PYTER P +P LRP YQG NP
Sbjct: 213 PQLGLIDPLHTLSQPEKVAAYCGFDVFCHALESFTAIPYTERGSAPMNPNLRPPYQGSNP 272
Query: 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPIS 314
+SDVWARFAL+ IR+ F AV+NQDDL+ARS+MHLAS MAGVGFGNAGVHLCHGLSYPIS
Sbjct: 273 ISDVWARFALKIIRENFISAVFNQDDLKARSNMHLASTMAGVGFGNAGVHLCHGLSYPIS 332
Query: 315 GNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKA 374
G+VK F P GYS DHPIIPHGLSVVM+APAVF FTAAS PERH+EAAELLGA+VS+ +
Sbjct: 333 GHVKKFVPDGYSGDHPIIPHGLSVVMTAPAVFKFTAASCPERHLEAAELLGANVSKANRN 392
Query: 375 DA 376
DA
Sbjct: 393 DA 394
|
|
| UNIPROTKB|A6QP15 ADHFE1 "Hydroxyacid-oxoacid transhydrogenase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
Identities = 232/358 (64%), Positives = 284/358 (79%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
+YAFEMA STIR G GVT+EVGMD+ +M A+ VC+MTD +LS+L PV+ +DSL ++G+
Sbjct: 43 DYAFEMAVSTIRYGAGVTKEVGMDLQSMGAKNVCLMTDKNLSQLPPVQTVMDSLVKNGIN 102
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
F+++D VRVEPT SF+EA +F + DAF+AVGGGS IDTCKAANLY P+++FLDY
Sbjct: 103 FKVYDHVRVEPTDTSFMEAIEFAKKGAFDAFLAVGGGSTIDTCKAANLYSSSPDSDFLDY 162
Query: 141 VNAPIGKGKPVTVPLKPLIAIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGLI 200
VNAPIGKGKPVTVPLKPLIA+P IFDYE LK KTGIA+RA+KPTLGLI
Sbjct: 163 VNAPIGKGKPVTVPLKPLIAVPTTSGTGSETTGVAIFDYEHLKVKTGIASRAIKPTLGLI 222
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DPLHTL +PERV A SGFDV CHALES+TALPY R+PCP+ P+ RPAYQG NP+SD+WA
Sbjct: 223 DPLHTLHMPERVVANSGFDVLCHALESYTALPYHMRSPCPSSPITRPAYQGSNPISDIWA 282
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
AL+ + +Y KRA+ N DDLEARS+MHLASA AG+GFGNAGVHLCHG+SYPISG VKT+
Sbjct: 283 VHALRIVAKYLKRAIRNPDDLEARSNMHLASAFAGIGFGNAGVHLCHGMSYPISGLVKTY 342
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVP 378
Y+ DHP++PHGLSVV+++PAVF FT+ PERH+E AE+LGAD ++ DA P
Sbjct: 343 KAKDYNVDHPLVPHGLSVVLTSPAVFTFTSQMFPERHLEVAEILGADTRTARRPDAGP 400
|
|
| UNIPROTKB|F1PRA0 ADHFE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1267 (451.1 bits), Expect = 4.0e-129, P = 4.0e-129
Identities = 232/358 (64%), Positives = 285/358 (79%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
+YAFEMA S IR G GVT+EVGMD+ NM A+ VC+MTD +LS+L PV+ +DSL ++G+
Sbjct: 44 DYAFEMAVSNIRYGAGVTKEVGMDLQNMGAKNVCLMTDKNLSQLPPVQMVMDSLVKNGIN 103
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
F++++ VRVEPT SF+EA +FV+ DA++AVGGGS +DTCKAANLY P ++FLDY
Sbjct: 104 FKVYNNVRVEPTDRSFMEAIEFVKKRAFDAYVAVGGGSTMDTCKAANLYASSPHSDFLDY 163
Query: 141 VNAPIGKGKPVTVPLKPLIAIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGLI 200
VNAPIGKGKPV+VPLKPLIA+P IFDYEPLK KTGIA+RA+KPTLGLI
Sbjct: 164 VNAPIGKGKPVSVPLKPLIAVPTTSGTGSETTGVAIFDYEPLKVKTGIASRAIKPTLGLI 223
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DPLHTL +P+RV A SGFDV CHALES+TALPY R+PCP++P+ RPAYQG NP+SD+WA
Sbjct: 224 DPLHTLHMPDRVVANSGFDVLCHALESYTALPYHMRSPCPSNPITRPAYQGSNPISDIWA 283
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
AL+ + +Y KRAV N DDLEARS+MHLASA AG+GFGNAGVHLCHG+SYPISG VKT+
Sbjct: 284 VHALRIVAKYLKRAVRNPDDLEARSNMHLASAFAGIGFGNAGVHLCHGMSYPISGLVKTY 343
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVP 378
Y+ DHP++PHGLSVV+++PAVF FTA SPERH+E AE+LGAD + DA P
Sbjct: 344 KAKDYNVDHPLVPHGLSVVLTSPAVFTFTAQMSPERHLETAEILGADTRTARIPDAGP 401
|
|
| ZFIN|ZDB-GENE-040426-2070 adhfe1 "alcohol dehydrogenase, iron containing, 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 235/356 (66%), Positives = 278/356 (78%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
+YAFEMA S IR G GVTRE+GMD+ NM A+ VC+MTD LS+L PV A LDSL +HGVK
Sbjct: 86 DYAFEMACSNIRFGAGVTREIGMDLQNMGARNVCLMTDRTLSQLPPVAAVLDSLIKHGVK 145
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
+L++ VRVEPT SF A F + D ++AVGGGSVIDTCKAANLY PEAEFLD+
Sbjct: 146 HKLYEDVRVEPTDKSFKAAIDFAKKGHFDVYVAVGGGSVIDTCKAANLYASHPEAEFLDF 205
Query: 141 VNAPIGKGKPVTVPLKPLIAIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGLI 200
VNAPIGKGKP+T LKPLIA+P IFD E +KAKTGIANRALKPTLG++
Sbjct: 206 VNAPIGKGKPITATLKPLIAVPTTAGTGSETTGVAIFDLEDMKAKTGIANRALKPTLGMV 265
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DPLHTL +P RV A SGFDV CHALESFTALPY R+PCP +P+ RPAYQG NP+SDVWA
Sbjct: 266 DPLHTLHMPSRVAANSGFDVLCHALESFTALPYNLRSPCPPNPISRPAYQGSNPISDVWA 325
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
+ AL+ + +Y KRAV + +D+EARS MHLAS AG+GFGNAGVHLCHG+SYPI+GNVKT
Sbjct: 326 KHALRIVAKYLKRAVRDAEDVEARSSMHLASVFAGIGFGNAGVHLCHGMSYPIAGNVKTH 385
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADA 376
GY+ +HPI+PHGLSVV+++PAVF FTA PERH+EAA++LG DVS VKK DA
Sbjct: 386 RAKGYNVEHPIVPHGLSVVLTSPAVFEFTANMCPERHLEAAQILGTDVSNVKKDDA 441
|
|
| UNIPROTKB|F1MAZ7 ADHFE1 "Hydroxyacid-oxoacid transhydrogenase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 231/358 (64%), Positives = 283/358 (79%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
+YAFEMA STIR G GVT+EVGMD+ +M A+ VC+MTD +LS+L PV+ +DSL ++G+
Sbjct: 43 DYAFEMAVSTIRYGAGVTKEVGMDLQSMGAKNVCLMTDKNLSQLPPVQTVMDSLVKNGIN 102
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
F+++D VRVEPT SF+EA +F + DAF+AVGGGS IDTCKAANLY P+++FLDY
Sbjct: 103 FKVYDHVRVEPTDTSFMEAIEFAKKGAFDAFLAVGGGSTIDTCKAANLYSSSPDSDFLDY 162
Query: 141 VNAPIGKGKPVTVPLKPLIAIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGLI 200
VNAPIGKGKPVTVPLKPLIA+P IFDYE LK KTGIA+RA+KPTL LI
Sbjct: 163 VNAPIGKGKPVTVPLKPLIAVPTTSGTGSETTGVAIFDYEHLKVKTGIASRAIKPTLSLI 222
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DPLHTL +PERV A SGFDV CHALES+TALPY R+PCP+ P+ RPAYQG NP+SD+WA
Sbjct: 223 DPLHTLHMPERVVANSGFDVLCHALESYTALPYHMRSPCPSSPITRPAYQGSNPISDIWA 282
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
AL+ + +Y KRA+ N DDLEARS+MHLASA AG+GFGNAGVHLCHG+SYPISG VKT+
Sbjct: 283 VHALRIVAKYLKRAIRNPDDLEARSNMHLASAFAGIGFGNAGVHLCHGMSYPISGLVKTY 342
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVP 378
Y+ DHP++PHGLSVV+++PAVF FT+ PERH+E AE+LGAD ++ DA P
Sbjct: 343 KAKDYNVDHPLVPHGLSVVLTSPAVFTFTSQMFPERHLEVAEILGADTRTARRPDAGP 400
|
|
| UNIPROTKB|Q7Q547 AGAP006646 "Probable hydroxyacid-oxoacid transhydrogenase, mitochondrial" [Anopheles gambiae (taxid:7165)] | Back alignment and assigned GO terms |
|---|
Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
Identities = 240/375 (64%), Positives = 292/375 (77%)
Query: 2 AEARPLRLLSDMSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHL 61
A +RP+ + S ++ + +K+ AFEM+SSTIR GPGVTRE+G D+ N+ A+ VCV++D ++
Sbjct: 23 AHSRPVAI-SQQTSCSAEKDTAFEMSSSTIRYGPGVTRELGHDLQNLGAKSVCVVSDRNV 81
Query: 62 SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVID 121
+L VK LD++ R G++ LFD VRVEPT +S A F RS + DAF+A+GGGS ID
Sbjct: 82 LQLPSVKVGLDAIVRAGIEPVLFDAVRVEPTNESLQTAIDFARSHRFDAFVAIGGGSAID 141
Query: 122 TCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPXXXXXXXXXXXXXIFDYEP 181
TCK ANLY D EAEFLDYVN PIG+ K VTVPLKPLIA+P IFD++P
Sbjct: 142 TCKVANLYSADREAEFLDYVNVPIGRAKEVTVPLKPLIAVPTTAGTGSETTGVAIFDHKP 201
Query: 182 LKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPT 241
L AKTGI+++AL+P LGL+DPLHTLS PE+V AY GFDVFCHALESFTA+PYTER P P
Sbjct: 202 LHAKTGISSKALRPILGLVDPLHTLSQPEKVAAYCGFDVFCHALESFTAIPYTERGPAPA 261
Query: 242 DPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNA 301
+P LRP YQG NP+SDVWARFALQTI ++F+RAVY DDLEARS MHLAS MAGVGFGNA
Sbjct: 262 NPKLRPPYQGSNPISDVWARFALQTISRHFRRAVYAPDDLEARSQMHLASTMAGVGFGNA 321
Query: 302 GVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAA 361
GVHLCHGLSYPI+G VK F P GY+ HPIIPHGLSVVM+AP+VF FT AS P+RH+EAA
Sbjct: 322 GVHLCHGLSYPIAGLVKQFIPDGYTGAHPIIPHGLSVVMTAPSVFRFTGASCPDRHLEAA 381
Query: 362 ELLGADVSRVKKADA 376
+LGADV++ + DA
Sbjct: 382 GILGADVAKSHRNDA 396
|
|
| RGD|1308863 Adhfe1 "alcohol dehydrogenase, iron containing, 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1257 (447.5 bits), Expect = 4.6e-128, P = 4.6e-128
Identities = 229/358 (63%), Positives = 284/358 (79%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
+YAFEMA S IR G GVT+EVGMD+ NM A+ VC+MTD +LS+L PV+ +DSL+++G+
Sbjct: 44 DYAFEMAVSNIRYGAGVTKEVGMDLQNMGAKNVCLMTDKNLSQLPPVQIVMDSLSKNGIS 103
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
F+++D VRVEPT SF++A +F + DA++AVGGGS +DTCKAANLY C P +EFLDY
Sbjct: 104 FQVYDNVRVEPTDGSFMDAIEFAKKGAFDAYVAVGGGSTMDTCKAANLYACSPHSEFLDY 163
Query: 141 VNAPIGKGKPVTVPLKPLIAIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGLI 200
VNAPIGKGKPVTVPLKPLIA+P IFDYE LK KTGIA+RA+KPTLGL+
Sbjct: 164 VNAPIGKGKPVTVPLKPLIAVPTTSGTGSETTGVAIFDYEHLKVKTGIASRAIKPTLGLV 223
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DPLHTL +P +V A SGFDV CHALES+TA+PY+ R+PCP++P+ RPAYQG NP+SD+WA
Sbjct: 224 DPLHTLHMPCQVVANSGFDVLCHALESYTAIPYSMRSPCPSNPIQRPAYQGSNPISDIWA 283
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
AL+ + +Y KRAV N DDLEARS MHLASA AG+GFGNAGVHLCHG+SYPISG VKT+
Sbjct: 284 VHALRIVAKYLKRAVRNPDDLEARSSMHLASAFAGIGFGNAGVHLCHGMSYPISGLVKTY 343
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVP 378
Y+ DHP++PHGLSVV+++PAVF FTA PERH+E AE+LGA++ K DA P
Sbjct: 344 KAKEYNVDHPLVPHGLSVVLTSPAVFTFTAQMFPERHLETAEILGANIRTAKIQDAGP 401
|
|
| UNIPROTKB|Q6P371 adhfe1 "Hydroxyacid-oxoacid transhydrogenase, mitochondrial" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
Identities = 232/359 (64%), Positives = 287/359 (79%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
EYAFEMA S IR G VT+E+GMD+ N+ A+ VCVMTD +L +L+PVKA L+SL ++ V
Sbjct: 40 EYAFEMAVSNIRYGENVTQEIGMDLQNLGARNVCVMTDRNLVELSPVKAVLNSLVKNNVS 99
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
F+L+D+VRVEPT SF++A +F + Q DA++ VGGGSVIDTCKAANLY P A+FLDY
Sbjct: 100 FKLYDRVRVEPTDKSFMDAIEFAKKGQFDAYVGVGGGSVIDTCKAANLYSSSPGADFLDY 159
Query: 141 VNAPIGKGKPVTVPLKPLIAIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGLI 200
VN PIGKGK VTVPLKPLIA+P IFDYE LKAKTGIA+RA+KPTLGLI
Sbjct: 160 VNPPIGKGKAVTVPLKPLIAVPTTSGTGSETTGIAIFDYEELKAKTGIASRAIKPTLGLI 219
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DP+HTLS+PERV A SGFDV CH+LES+TALPY R+PCPT+P+ RPAYQG NP+SDVWA
Sbjct: 220 DPVHTLSMPERVVANSGFDVLCHSLESYTALPYNMRSPCPTNPINRPAYQGSNPISDVWA 279
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
+ AL+ + +Y KRAV N DD EAR MHLAS+ AGVGFGNAGVHLCHG+SYPI+G+VKT+
Sbjct: 280 KHALRIVAKYLKRAVRNPDDREARFAMHLASSFAGVGFGNAGVHLCHGMSYPIAGHVKTY 339
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV--SRVKKADAV 377
Y DHP++PHGLSVV+++PAVF+FTA PERH+EAAE+LGAD+ +++K+A +
Sbjct: 340 RAKDYEVDHPLVPHGLSVVLTSPAVFSFTALMCPERHLEAAEILGADIRTAKIKEAGLI 398
|
|
| UNIPROTKB|Q08B39 adhfe1 "Hydroxyacid-oxoacid transhydrogenase, mitochondrial" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 1253 (446.1 bits), Expect = 1.2e-127, P = 1.2e-127
Identities = 231/356 (64%), Positives = 283/356 (79%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
+YAFEMA S+IR G VT+E+GMD+ N + VCVMTD +LS+L+PVKA L+SL ++G+
Sbjct: 40 DYAFEMAVSSIRYGENVTQEIGMDLQNWGTRNVCVMTDRNLSELSPVKAVLNSLVKNGIN 99
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
F+L+D VRVEPT SF++A +F + Q DAF+AVGGGSVIDTCKAANLY P+++FLDY
Sbjct: 100 FKLYDSVRVEPTDKSFMDAIEFAKKGQFDAFVAVGGGSVIDTCKAANLYSSSPDSDFLDY 159
Query: 141 VNAPIGKGKPVTVPLKPLIAIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGLI 200
VN PIGKGK VTVPLKPLIA+P IFDYE LKAKTGIA+RA+KPTLGLI
Sbjct: 160 VNPPIGKGKAVTVPLKPLIAVPTTSGTGSETTGIAIFDYEELKAKTGIASRAIKPTLGLI 219
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DP HTLS+PERV A SGFDV CH+LES+TALPY R+PCPT+P+ RPAYQG NP+SDVWA
Sbjct: 220 DPAHTLSMPERVVANSGFDVLCHSLESYTALPYNMRSPCPTNPINRPAYQGSNPISDVWA 279
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
+ AL+ + ++ KRAV N DD EAR MHLAS+ AGVGFGNAGVHLCHG+SYPI+G+VKT+
Sbjct: 280 KHALRIVAKFLKRAVRNPDDREARFAMHLASSFAGVGFGNAGVHLCHGMSYPIAGHVKTY 339
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADA 376
Y DHP++PHGLSVV+++PAVF+FT PERH+EAAE+LGAD+ K DA
Sbjct: 340 RAKDYKVDHPLVPHGLSVVLTSPAVFSFTGLMCPERHLEAAEILGADLRTAKIKDA 395
|
|
| UNIPROTKB|F1NZ93 ADHFE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
Identities = 228/359 (63%), Positives = 288/359 (80%)
Query: 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
+YAFEMA S +R G GVT+E+GMD+ N+ A+RVC+MTD +LS+L PV A L+SLT+ G+
Sbjct: 4 DYAFEMAISNVRYGEGVTKEIGMDLQNLGAKRVCLMTDRNLSQLPPVDAVLNSLTKSGIN 63
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
F+++D VRVEPT SFL+A +F + + DA++AVGGGSVIDTCKAANLY P ++FLDY
Sbjct: 64 FQMYDNVRVEPTDQSFLDAIEFAKKGEFDAYVAVGGGSVIDTCKAANLYASSPTSDFLDY 123
Query: 141 VNAPIGKGKPVTVPLKPLIAIPXXXXXXXXXXXXXIFDYEPLKAKTGIANRALKPTLGLI 200
VNAPIGKGK VTVPLKPLIA+P IFD++ LK KTGIA+RA+KPTLG+I
Sbjct: 124 VNAPIGKGKAVTVPLKPLIAVPTTAGTGSETTGVAIFDFKELKVKTGIASRAIKPTLGII 183
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
DPLHTLS+PER+ A SGFDV CHALES+TALPY R+PCP++P+ RPAYQG NP+SDVWA
Sbjct: 184 DPLHTLSMPERIVANSGFDVLCHALESYTALPYKMRSPCPSNPINRPAYQGSNPISDVWA 243
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTF 320
AL+ + +Y KRA+ N +D EAR++MHLASA AG+GFGNAGVHLCHG+SYPISG VKT+
Sbjct: 244 LHALRIVAKYLKRAIRNPEDREARANMHLASAFAGIGFGNAGVHLCHGMSYPISGLVKTY 303
Query: 321 HPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV--SRVKKADAV 377
P Y+ DH ++PHGLSVV+++PAVF FTA PERH+EAAE+LGAD+ +R+K A +
Sbjct: 304 KPKDYNVDHSLVPHGLSVVLTSPAVFAFTAQVHPERHLEAAEILGADIRTARIKDAGLI 362
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7Q547 | HOT_ANOGA | 1, ., 1, ., 9, 9, ., 2, 4 | 0.6693 | 0.5666 | 0.8060 | yes | N/A |
| Q5RF11 | HOT_PONAB | 1, ., 1, ., 9, 9, ., 2, 4 | 0.6713 | 0.5393 | 0.7623 | yes | N/A |
| Q9U2M4 | HOT_CAEEL | 1, ., 1, ., 9, 9, ., 2, 4 | 0.5069 | 0.5363 | 0.7612 | yes | N/A |
| Q4QQW3 | HOT_RAT | 1, ., 1, ., 9, 9, ., 2, 4 | 0.6713 | 0.5439 | 0.7687 | yes | N/A |
| Q6P371 | HOT_XENTR | 1, ., 1, ., 9, 9, ., 2, 4 | 0.6825 | 0.5393 | 0.7688 | yes | N/A |
| Q54GJ7 | HOT_DICDI | 1, ., 1, ., 9, 9, ., 2, 4 | 0.5202 | 0.5424 | 0.6544 | yes | N/A |
| Q9W265 | HOT_DROME | 1, ., 1, ., 9, 9, ., 2, 4 | 0.6685 | 0.5378 | 0.7650 | yes | N/A |
| A6QP15 | HOT_BOVIN | 1, ., 1, ., 9, 9, ., 2, 4 | 0.6749 | 0.55 | 0.7789 | yes | N/A |
| Q8R0N6 | HOT_MOUSE | 1, ., 1, ., 9, 9, ., 2, 4 | 0.6685 | 0.5257 | 0.7462 | yes | N/A |
| Q8IWW8 | HOT_HUMAN | 1, ., 1, ., 9, 9, ., 2, 4 | 0.6657 | 0.5393 | 0.7623 | yes | N/A |
| Q28XT3 | HOT_DROPS | 1, ., 1, ., 9, 9, ., 2, 4 | 0.6722 | 0.5242 | 0.7456 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 660 | |||
| cd08190 | 414 | cd08190, HOT, Hydroxyacid-oxoacid transhydrogenase | 0.0 | |
| cd08190 | 414 | cd08190, HOT, Hydroxyacid-oxoacid transhydrogenase | 1e-180 | |
| cd08551 | 370 | cd08551, Fe-ADH, iron-containing alcohol dehydroge | 1e-101 | |
| pfam00465 | 323 | pfam00465, Fe-ADH, Iron-containing alcohol dehydro | 3e-82 | |
| COG1454 | 377 | COG1454, EutG, Alcohol dehydrogenase, class IV [En | 9e-80 | |
| cd08194 | 375 | cd08194, Fe-ADH6, Iron-containing alcohol dehydrog | 4e-70 | |
| cd08551 | 370 | cd08551, Fe-ADH, iron-containing alcohol dehydroge | 7e-68 | |
| cd08185 | 380 | cd08185, Fe-ADH1, Iron-containing alcohol dehydrog | 9e-66 | |
| cd08191 | 386 | cd08191, HHD, 6-hydroxyhexanoate dehydrogenase (HH | 2e-65 | |
| cd08193 | 376 | cd08193, HVD, 5-hydroxyvalerate dehydrogenase (HVD | 2e-62 | |
| COG1454 | 377 | COG1454, EutG, Alcohol dehydrogenase, class IV [En | 4e-56 | |
| cd08180 | 332 | cd08180, PDD, 1,3-propanediol dehydrogenase (PPD) | 2e-53 | |
| cd08176 | 377 | cd08176, LPO, Lactadehyde:propanediol oxidoreducta | 5e-53 | |
| cd08178 | 398 | cd08178, AAD_C, C-terminal alcohol dehydrogenase d | 8e-53 | |
| cd08182 | 367 | cd08182, HEPD, Hydroxyethylphosphoate dehydrogenas | 1e-52 | |
| cd08191 | 386 | cd08191, HHD, 6-hydroxyhexanoate dehydrogenase (HH | 4e-51 | |
| cd08188 | 377 | cd08188, Fe-ADH4, Iron-containing alcohol dehydrog | 4e-49 | |
| cd08189 | 374 | cd08189, Fe-ADH5, Iron-containing alcohol dehydrog | 6e-49 | |
| pfam00465 | 323 | pfam00465, Fe-ADH, Iron-containing alcohol dehydro | 9e-48 | |
| cd08193 | 376 | cd08193, HVD, 5-hydroxyvalerate dehydrogenase (HVD | 1e-47 | |
| PRK13805 | 862 | PRK13805, PRK13805, bifunctional acetaldehyde-CoA/ | 7e-46 | |
| cd08192 | 370 | cd08192, Fe-ADH7, Iron-containing alcohol dehydrog | 3e-45 | |
| cd08185 | 380 | cd08185, Fe-ADH1, Iron-containing alcohol dehydrog | 6e-45 | |
| cd08194 | 375 | cd08194, Fe-ADH6, Iron-containing alcohol dehydrog | 6e-44 | |
| cd08181 | 357 | cd08181, PPD-like, 1,3-propanediol dehydrogenase-l | 1e-43 | |
| cd08186 | 383 | cd08186, Fe-ADH8, Iron-containing alcohol dehydrog | 9e-43 | |
| cd08179 | 375 | cd08179, NADPH_BDH, NADPH-dependent butanol dehydr | 3e-42 | |
| cd08183 | 374 | cd08183, Fe-ADH2, Iron-containing alcohol dehydrog | 3e-40 | |
| TIGR02638 | 379 | TIGR02638, lactal_redase, lactaldehyde reductase | 8e-40 | |
| cd08180 | 332 | cd08180, PDD, 1,3-propanediol dehydrogenase (PPD) | 1e-37 | |
| cd08176 | 377 | cd08176, LPO, Lactadehyde:propanediol oxidoreducta | 4e-36 | |
| PRK15454 | 395 | PRK15454, PRK15454, ethanol dehydrogenase EutG; Pr | 2e-34 | |
| cd08188 | 377 | cd08188, Fe-ADH4, Iron-containing alcohol dehydrog | 3e-33 | |
| cd08178 | 398 | cd08178, AAD_C, C-terminal alcohol dehydrogenase d | 7e-33 | |
| TIGR03405 | 355 | TIGR03405, Phn_Fe-ADH, phosphonate metabolism-asso | 1e-32 | |
| cd08187 | 382 | cd08187, BDH, Butanol dehydrogenase catalyzes the | 1e-31 | |
| cd08181 | 357 | cd08181, PPD-like, 1,3-propanediol dehydrogenase-l | 2e-31 | |
| cd08179 | 375 | cd08179, NADPH_BDH, NADPH-dependent butanol dehydr | 2e-31 | |
| cd08182 | 367 | cd08182, HEPD, Hydroxyethylphosphoate dehydrogenas | 3e-31 | |
| cd08192 | 370 | cd08192, Fe-ADH7, Iron-containing alcohol dehydrog | 1e-30 | |
| cd08186 | 383 | cd08186, Fe-ADH8, Iron-containing alcohol dehydrog | 2e-29 | |
| PRK13805 | 862 | PRK13805, PRK13805, bifunctional acetaldehyde-CoA/ | 1e-28 | |
| PRK10624 | 382 | PRK10624, PRK10624, L-1,2-propanediol oxidoreducta | 1e-28 | |
| TIGR02638 | 379 | TIGR02638, lactal_redase, lactaldehyde reductase | 4e-27 | |
| cd07766 | 332 | cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like | 8e-27 | |
| cd08189 | 374 | cd08189, Fe-ADH5, Iron-containing alcohol dehydrog | 9e-27 | |
| PRK09860 | 383 | PRK09860, PRK09860, putative alcohol dehydrogenase | 9e-27 | |
| TIGR04266 | 420 | TIGR04266, NDMA_methanol, NDMA-dependent methanol | 1e-26 | |
| cd08183 | 374 | cd08183, Fe-ADH2, Iron-containing alcohol dehydrog | 2e-24 | |
| PRK15454 | 395 | PRK15454, PRK15454, ethanol dehydrogenase EutG; Pr | 3e-23 | |
| cd08177 | 337 | cd08177, MAR, Maleylacetate reductase is involved | 4e-22 | |
| PRK09860 | 383 | PRK09860, PRK09860, putative alcohol dehydrogenase | 9e-22 | |
| COG1979 | 384 | COG1979, COG1979, Uncharacterized oxidoreductases, | 9e-22 | |
| TIGR03405 | 355 | TIGR03405, Phn_Fe-ADH, phosphonate metabolism-asso | 6e-21 | |
| PRK10624 | 382 | PRK10624, PRK10624, L-1,2-propanediol oxidoreducta | 6e-20 | |
| cd08187 | 382 | cd08187, BDH, Butanol dehydrogenase catalyzes the | 1e-16 | |
| cd07766 | 332 | cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like | 1e-16 | |
| TIGR04266 | 420 | TIGR04266, NDMA_methanol, NDMA-dependent methanol | 1e-15 | |
| cd08184 | 347 | cd08184, Fe-ADH3, Iron-containing alcohol dehydrog | 9e-15 | |
| COG1979 | 384 | COG1979, COG1979, Uncharacterized oxidoreductases, | 3e-14 | |
| cd08177 | 337 | cd08177, MAR, Maleylacetate reductase is involved | 7e-13 | |
| PRK15138 | 387 | PRK15138, PRK15138, aldehyde reductase; Provisiona | 3e-10 | |
| cd08184 | 347 | cd08184, Fe-ADH3, Iron-containing alcohol dehydrog | 5e-09 | |
| PRK15138 | 387 | PRK15138, PRK15138, aldehyde reductase; Provisiona | 1e-08 | |
| pfam13685 | 247 | pfam13685, Fe-ADH_2, Iron-containing alcohol dehyd | 1e-08 | |
| cd08170 | 351 | cd08170, GlyDH, Glycerol dehydrogenases (GlyDH) ca | 8e-06 | |
| cd08173 | 339 | cd08173, Gro1PDH, Sn-glycerol-1-phosphate dehydrog | 1e-04 | |
| cd08172 | 347 | cd08172, GlyDH-like1, Glycerol dehydrogenases-like | 4e-04 | |
| COG0371 | 360 | COG0371, GldA, Glycerol dehydrogenase and related | 7e-04 | |
| cd08174 | 331 | cd08174, G1PDH-like, Glycerol-1-phosphate dehydrog | 0.001 | |
| cd08171 | 345 | cd08171, GlyDH-like2, Glycerol dehydrogenase-like | 0.002 |
| >gnl|CDD|173949 cd08190, HOT, Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism | Back alignment and domain information |
|---|
Score = 644 bits (1664), Expect = 0.0
Identities = 232/355 (65%), Positives = 283/355 (79%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
S IR GPGVT EVGMD+ N+ A+RVC++TDP+L++L PVK LDSL G+ FE++D VR
Sbjct: 2 SNIRFGPGVTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVR 61
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
VEPT +SF +A F + Q DAF+AVGGGSVIDT KAANLY P+A+FLDYVNAPIGKG
Sbjct: 62 VEPTDESFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAANLYASHPDADFLDYVNAPIGKG 121
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
KP PLKPLIAIPTT+GTGSETTGV+IFD LKAKTGIA+RALKPTLG++DPL+TL++
Sbjct: 122 KPPPGPLKPLIAIPTTAGTGSETTGVAIFDLPELKAKTGIASRALKPTLGIVDPLNTLTM 181
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P RVTA SG DV CHALES+TA+PY +R P P++P+ RPAYQG NP+SD+W+ AL+ +
Sbjct: 182 PSRVTASSGLDVLCHALESYTAIPYNQRPPRPSNPIQRPAYQGSNPISDIWSLQALRIVG 241
Query: 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 328
+Y +RAV + DDLEARS MHLAS AG+GFGNAGVHLCHG+SYPI+G VK + Y D
Sbjct: 242 KYLRRAVADPDDLEARSQMHLASTFAGIGFGNAGVHLCHGMSYPIAGLVKDYKAPDYPVD 301
Query: 329 HPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGT 383
HP++PHGLSVV++APAVF FTA + PERH+EAAE+LGAD S K DA +
Sbjct: 302 HPLVPHGLSVVVTAPAVFRFTAPACPERHLEAAEILGADTSNAKIEDAGEVLADA 356
|
Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT enzyme is located in mitochondria, and is expressed with an N-terminal mitochondrial targeting sequence. HOT enzyme is member of the metal-containing alcohol dehydrogenase family. They typically contain an iron although other metal ions may be used. Length = 414 |
| >gnl|CDD|173949 cd08190, HOT, Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism | Back alignment and domain information |
|---|
Score = 517 bits (1334), Expect = e-180
Identities = 184/282 (65%), Positives = 226/282 (80%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSETTGV+IFD LKAKTGIA+RALKPTLG++DPL+TL++P RVTA SG D
Sbjct: 133 AIPTTAGTGSETTGVAIFDLPELKAKTGIASRALKPTLGIVDPLNTLTMPSRVTASSGLD 192
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
V CHALES+TA+PY +R P P++P+ RPAYQG NP+SD+W+ AL+ + +Y +RAV + D
Sbjct: 193 VLCHALESYTAIPYNQRPPRPSNPIQRPAYQGSNPISDIWSLQALRIVGKYLRRAVADPD 252
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEARS MHLAS AG+GFGNAGVHLCHG+SYPI+G VK + Y DHP++PHGLSVV
Sbjct: 253 DLEARSQMHLASTFAGIGFGNAGVHLCHGMSYPIAGLVKDYKAPDYPVDHPLVPHGLSVV 312
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
++APAVF FTA + PERH+EAAE+LGAD S K DAG++LAD +R M + + +GL
Sbjct: 313 VTAPAVFRFTAPACPERHLEAAEILGADTSNAKIEDAGEVLADALRKLMRDLGVPDGLAA 372
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657
LGYT +DIPALV GTLPQ R+ KLAPR EEDLA LFE SM
Sbjct: 373 LGYTESDIPALVKGTLPQQRVLKLAPRPVDEEDLAALFEESM 414
|
Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT enzyme is located in mitochondria, and is expressed with an N-terminal mitochondrial targeting sequence. HOT enzyme is member of the metal-containing alcohol dehydrogenase family. They typically contain an iron although other metal ions may be used. Length = 414 |
| >gnl|CDD|173961 cd08551, Fe-ADH, iron-containing alcohol dehydrogenases (Fe-ADH)-like | Back alignment and domain information |
|---|
Score = 312 bits (802), Expect = e-101
Identities = 120/349 (34%), Positives = 172/349 (49%), Gaps = 41/349 (11%)
Query: 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV 89
I G G ++G ++ N+ ++ ++TDP L K + +DSL G++ +FD V
Sbjct: 3 RIIFGAGAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEP 62
Query: 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK 149
PT + A R CD IAVGGGSV+DT KA L +P + GK
Sbjct: 63 NPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYE------GGK 116
Query: 150 PVTVPLKPLIAIPTTSGTGSETTGVS-IFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
PV P PLIAIPTT+GTGSE T + I D E K GIA+ L P + ++DP T +L
Sbjct: 117 PVIKPALPLIAIPTTAGTGSEVTPFAVITDEET-GEKYGIASPELLPDVAILDPELTYTL 175
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P +TA +G D HA+E++ + NP+SD A A++ I
Sbjct: 176 PPALTAATGMDALTHAIEAYVSRKA-------------------NPISDALAIKAIRLIA 216
Query: 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 328
+ +AV DLEAR M LAS +AG+ F NAG+ H +++P+ +H
Sbjct: 217 KNLPKAVKEGGDLEAREKMALASTLAGMAFSNAGLGAVHAMAHPLGAL---YH------- 266
Query: 329 HPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAV 377
IPHGL+ + P V F A + PE++ + A +G VS +A
Sbjct: 267 ---IPHGLANAILLPHVMRFNAEAIPEKYADIARAMG-KVSGGSDDEAA 311
|
Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H. Length = 370 |
| >gnl|CDD|215932 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 262 bits (672), Expect = 3e-82
Identities = 114/319 (35%), Positives = 162/319 (50%), Gaps = 40/319 (12%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+ I G G E+G ++ + R ++TDP L KL + LDSL G++ +FD V
Sbjct: 2 TRIVFGEGALEELGEELKRLG--RALIVTDPSLKKLGLLDKVLDSLEEAGIEVVVFDGVE 59
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
PT + EA R D IAVGGGSVIDT KA L +P + G
Sbjct: 60 PNPTLEEVDEAAAAAREEGADVIIAVGGGSVIDTAKAIALLATNPGDVWDYL------GG 113
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
K + P PLIAIPTT+GTGSE T +++ E K GI + L P L ++DP TL+L
Sbjct: 114 KKLPKPALPLIAIPTTAGTGSEVTPLAVITDEEGGFKMGIGSPKLLPDLAIVDPELTLTL 173
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P R+TA +G D HA+E++ + +G NP++D A A++ I
Sbjct: 174 PPRLTAATGMDALAHAIEAYVS-------------------KGANPLTDALALEAIRLIA 214
Query: 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 328
+ RAV + +DLEAR++M LAS +AG+ F NAG+ H L++ + G FH
Sbjct: 215 ENLPRAVADPEDLEARANMLLASTLAGLAFSNAGLGAAHALAHALGG---LFH------- 264
Query: 329 HPIIPHGLSVVMSAPAVFN 347
IPHG + + P +
Sbjct: 265 ---IPHGEANAILLPELLR 280
|
Length = 323 |
| >gnl|CDD|224371 COG1454, EutG, Alcohol dehydrogenase, class IV [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 257 bits (659), Expect = 9e-80
Identities = 126/356 (35%), Positives = 180/356 (50%), Gaps = 40/356 (11%)
Query: 23 AFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE 82
+ + I G G +E+G ++ + A+R ++TD L+KL + LDSL G+++E
Sbjct: 2 NWFYLPTEILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYE 61
Query: 83 LFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKA-ANLYYCDPEAEFLDYV 141
+FD+V EPT ++ + R D IA+GGGSVID KA A L LDY
Sbjct: 62 VFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSV--LDYE 119
Query: 142 NAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLID 201
IGK K P PLIAIPTT+GTGSE T ++ E K IA+ L P + ++D
Sbjct: 120 G--IGKVKK---PKAPLIAIPTTAGTGSEVTPFAVITDEETGVKYAIADPELLPDVAILD 174
Query: 202 PLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWAR 261
P TL +P +TA +G D HA+E++ + NP++D A
Sbjct: 175 PELTLGMPPSLTAATGMDALTHAIEAYVSP-------------------AANPITDALAL 215
Query: 262 FALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFH 321
A++ I +Y RAV + DDLEAR MHLA+ +AG+ F NAG+ L H L++P+ FH
Sbjct: 216 EAIKLIFEYLPRAVADGDDLEAREKMHLAATLAGMAFANAGLGLVHALAHPLGA---LFH 272
Query: 322 PAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAV 377
IPHGL+ + P V F A ++PER+ A LG +
Sbjct: 273 ----------IPHGLANAILLPYVIRFNAEAAPERYARIARALGLPGEGDAADALI 318
|
Length = 377 |
| >gnl|CDD|173953 cd08194, Fe-ADH6, Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 4e-70
Identities = 121/347 (34%), Positives = 168/347 (48%), Gaps = 38/347 (10%)
Query: 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV 89
TI IG G E G + ++ +R ++TD + KL V DSL + G++ +FD V
Sbjct: 3 TIIIGEGAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVS 62
Query: 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK 149
EPT +S E K + CD IA+GGGS IDT KA + DY +
Sbjct: 63 EPTDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVL-ATNGGSIRDYK-----GPR 116
Query: 150 PVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLP 209
V P PLIAIPTT+GTGSE T ++ K + AL P ++DP TL+ P
Sbjct: 117 IVDKPGLPLIAIPTTAGTGSEVTRFTVITDTKTDEKMLLKGLALLPKAAIVDPELTLTSP 176
Query: 210 ERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQ 269
RVTA +G D HA+E++ + R A P++D++A A++ I +
Sbjct: 177 PRVTAATGIDALTHAIEAYVS---------------RKA----QPMTDLFALSAIKLIGK 217
Query: 270 YFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDH 329
+ A N D+ EAR M L + AG+ F NA V L HG+S PI FH
Sbjct: 218 NLRTAYLNPDNREAREEMMLGATEAGIAFSNASVALVHGMSRPIGAL---FH-------- 266
Query: 330 PIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADA 376
+PHGLS M PAV F+ S+PER+ + A +G +A
Sbjct: 267 --VPHGLSNAMLLPAVTEFSLPSAPERYADIARAMGEANEGDSDREA 311
|
Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. Length = 375 |
| >gnl|CDD|173961 cd08551, Fe-ADH, iron-containing alcohol dehydrogenases (Fe-ADH)-like | Back alignment and domain information |
|---|
Score = 226 bits (577), Expect = 7e-68
Identities = 86/279 (30%), Positives = 130/279 (46%), Gaps = 36/279 (12%)
Query: 376 AVPTTSGTGSETTGVS-IFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGF 434
A+PTT+GTGSE T + I D E K GIA+ L P + ++DP T +LP +TA +G
Sbjct: 127 AIPTTAGTGSEVTPFAVITDEET-GEKYGIASPELLPDVAILDPELTYTLPPALTAATGM 185
Query: 435 DVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
D HA+E++ + NP+SD A A++ I + +AV
Sbjct: 186 DALTHAIEAYVSRKA-------------------NPISDALAIKAIRLIAKNLPKAVKEG 226
Query: 495 DDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 554
DLEAR M LAS +AG+ F NAG+ H +++P+ +H IPHGL+
Sbjct: 227 GDLEAREKMALASTLAGMAFSNAGLGAVHAMAHPLGAL---YH----------IPHGLAN 273
Query: 555 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLK 614
+ P V F A + PE++ + A +G VS +A +R ++ I L
Sbjct: 274 AILLPHVMRFNAEAIPEKYADIARAMG-KVSGGSDDEAANAAIAAIRKLNKELGIPTSLA 332
Query: 615 VLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653
LG DI L + + PR + ED+ ++
Sbjct: 333 DLGVKEEDIDKLAELAMEDACLLNN-PRIITREDIREIY 370
|
Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H. Length = 370 |
| >gnl|CDD|173944 cd08185, Fe-ADH1, Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Score = 220 bits (564), Expect = 9e-66
Identities = 109/345 (31%), Positives = 162/345 (46%), Gaps = 34/345 (9%)
Query: 31 IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPV-KATLDSLTRHGVKFELFDKVRV 89
I G G E+G + ++ ++T SK ++ L + GV+ +FDKV
Sbjct: 7 IVFGAGKLNELG-EEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEP 65
Query: 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK 149
PT + +E R CD + +GGGS +DT KA E ++ DY+ GKGK
Sbjct: 66 NPTTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAA-NEGDYWDYIFGGTGKGK 124
Query: 150 PVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLP 209
P P+IAI TT+GTGSE ++ K K G+ + A P + ++DP L++P
Sbjct: 125 PPPEKALPIIAITTTAGTGSEADPWAVITNPETKEKIGLGHPATFPKISIVDPELMLTVP 184
Query: 210 ERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQ 269
+TAY+GFD F HA E++ A NP+SD+ A A++ I +
Sbjct: 185 PHLTAYTGFDAFFHAFEAYIA-------NNA------------NPMSDMLALEAIELIAK 225
Query: 270 YFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDH 329
Y RAV + DLEAR M A+ + G+ N+G H L + +SG HP
Sbjct: 226 YLPRAVKDGSDLEAREKMAWANTLGGMVEANSGCTSPHALEHALSG----LHPD------ 275
Query: 330 PIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKA 374
+PHG + M +PA F F A +PE+ A A + + A
Sbjct: 276 --LPHGAGLAMLSPAYFEFFARKAPEKFAFVARAEAAGLEDEEAA 318
|
Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea. Length = 380 |
| >gnl|CDD|173950 cd08191, HHD, 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 2e-65
Identities = 111/341 (32%), Positives = 156/341 (45%), Gaps = 24/341 (7%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
T+ G G R++ + R ++TD ++ + +L GV+ E+FD V
Sbjct: 2 GTLLFGAGQRRQLP-RLAARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVL 60
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
+ +A D I +GGGS ID K A L + DY G
Sbjct: 61 PDLPRSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHG-GDVRDYYGEFKVPG 119
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
+ PLIA+PTT+GTGSE T V++ K G+A+ L+P + +IDP TL+
Sbjct: 120 PVL-----PLIAVPTTAGTGSEVTPVAVLTDPDNAMKVGVASPHLRPAIAIIDPELTLTC 174
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P VTA SG D HA+ESFTA+ R P P Y G+N ++D++AR A++ I
Sbjct: 175 PPGVTADSGADALTHAIESFTAMD---RNPFPDGD-ADHVYSGKNALTDLFAREAIRLIG 230
Query: 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 328
+ RAV + DDLEAR+ M LA+ +AG+ FG AG H L YP+ T
Sbjct: 231 RSLPRAVRDGDDLEARTDMMLAALLAGLAFGTAGTAAVHALQYPVGALTHT--------- 281
Query: 329 HPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVS 369
HG V P V F + E E +LG
Sbjct: 282 ----SHGFGVAALLPYVMRFNLPARREEFAEIGRVLGVAAG 318
|
6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Length = 386 |
| >gnl|CDD|173952 cd08193, HVD, 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 2e-62
Identities = 120/354 (33%), Positives = 168/354 (47%), Gaps = 45/354 (12%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
I G G +G + + A+RV V+TDP + K + L SL G++ +FD V
Sbjct: 5 PRIVFGAGSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVE 64
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK-AANLYYCDPEAEFLDYVNAPIGK 147
+P A + R+ D I GGGS +D K A L + D +
Sbjct: 65 ADPPEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVL--AGSDQPLADMYGVDLVA 122
Query: 148 GKPVTVPLKPLIAIPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLGLIDPLHTL 206
G + PLI +PTT+GTGSE T ++I E LK G+ + L P L ++DP TL
Sbjct: 123 GPRL-----PLILVPTTAGTGSEVTPIAIVTTPETLKV--GVVSPHLLPDLAILDPELTL 175
Query: 207 SLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266
LP +TA +G D HA+E++T+ + A NP+SD+ A AL+
Sbjct: 176 GLPPHITAATGIDAMVHAIEAYTS--------------RKKA----NPLSDLLALEALRL 217
Query: 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYS 326
+ RAV + DDLEAR M L + AG F NA V H L+YP+ G FH
Sbjct: 218 LGANIPRAVKDGDDLEAREAMLLGAMYAGQAFANAPVAAVHALAYPLGG---KFH----- 269
Query: 327 DDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLG---ADVSRVKKADAV 377
IPHGLS + P V F A ++ ER+ E A+ LG A S + A+A+
Sbjct: 270 -----IPHGLSNALVLPHVLRFNAPAAEERYAELADALGPDLAGASDEEAAEAL 318
|
5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene. Length = 376 |
| >gnl|CDD|224371 COG1454, EutG, Alcohol dehydrogenase, class IV [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 4e-56
Identities = 97/296 (32%), Positives = 143/296 (48%), Gaps = 41/296 (13%)
Query: 366 ADVSRVKKAD----AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHT 421
+ +VKK A+PTT+GTGSE T ++ E K IA+ L P + ++DP T
Sbjct: 119 EGIGKVKKPKAPLIAIPTTAGTGSEVTPFAVITDEETGVKYAIADPELLPDVAILDPELT 178
Query: 422 LSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQ 481
L +P +TA +G D HA+E++ + NP++D A A++
Sbjct: 179 LGMPPSLTAATGMDALTHAIEAYVSP-------------------AANPITDALALEAIK 219
Query: 482 TIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGY 541
I +Y RAV + DDLEAR MHLA+ +AG+ F NAG+ L H L++P+ FH
Sbjct: 220 LIFEYLPRAVADGDDLEAREKMHLAATLAGMAFANAGLGLVHALAHPLGA---LFH---- 272
Query: 542 SDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVR 601
IPHGL+ + P V F A ++PER+ A LG DA L D +R
Sbjct: 273 ------IPHGLANAILLPYVIRFNAEAAPERYARIARALGLPGEG----DAADALIDALR 322
Query: 602 GYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657
++++ I L+ LG DI L L T PR + ED+ ++E +
Sbjct: 323 ELLERLGIPKRLRDLGVKEEDIDKLAEDALAD-PCTATNPRPPTREDIKEIYEAAY 377
|
Length = 377 |
| >gnl|CDD|173939 cd08180, PDD, 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 2e-53
Identities = 91/302 (30%), Positives = 135/302 (44%), Gaps = 50/302 (16%)
Query: 47 NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106
+K +RV ++TDP + K + D L ++ E+F V +P + + K
Sbjct: 19 ELKNKRVLIVTDPFMVKSGMLDKVTDHLDS-SIEVEIFSDVVPDPPIEVVAKGIKKFLDF 77
Query: 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166
+ D IA+GGGS ID KA +Y+ K IAIPTTSG
Sbjct: 78 KPDIVIALGGGSAIDAAKAI-IYFA----------------KKLGKKKKPLFIAIPTTSG 120
Query: 167 TGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALE 226
TGSE T ++ K + + L P + ++DP ++P VTA +G DV HALE
Sbjct: 121 TGSEVTSFAVITDPETGVKYPLVDDELLPDIAILDPELVKTVPPAVTADTGMDVLTHALE 180
Query: 227 SFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSH 286
++ + N +D A A++ + +Y +A + DDLEAR
Sbjct: 181 AYVS-------------------TDANDFTDALAEKAIKLVFEYLPKAYKDGDDLEAREK 221
Query: 287 MHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346
MH AS MAG+ F NAG+ + H L++ + G FH IPHG + + P V
Sbjct: 222 MHNASCMAGMAFNNAGLGINHSLAHALGG---KFH----------IPHGRANAILLPYVI 268
Query: 347 NF 348
F
Sbjct: 269 EF 270
|
1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinate synthase-like fold. Length = 332 |
| >gnl|CDD|173935 cd08176, LPO, Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 5e-53
Identities = 96/345 (27%), Positives = 159/345 (46%), Gaps = 38/345 (11%)
Query: 33 IGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPT 92
G G +E+G ++ N+ ++ ++TD L K+ V+ D L G+ + ++D V+ PT
Sbjct: 11 FGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPT 70
Query: 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVT 152
+ + + CD I++GGGS D KA + + + DY + K
Sbjct: 71 ITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNG-GDIRDY--EGVAK---SK 124
Query: 153 VPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERV 212
P P++AI TT+GT SE T + E K K I + P + + DP + +P +
Sbjct: 125 KPAVPIVAINTTAGTASEVTINYVITDEERKVKMVIVDPNDIPIVAVNDPELMVGMPPGL 184
Query: 213 TAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFK 272
TA +G D HA+E++ + G NP++D A A++ I + +
Sbjct: 185 TAATGMDALTHAIEAYVST-------------------GANPITDACALKAIELIAKNLR 225
Query: 273 RAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPII 332
RAV N DLEAR M A +AG+ F NAG+ H +++ + G + +
Sbjct: 226 RAVANGKDLEAREGMAYAQYLAGMAFNNAGLGYVHSMAHQLGG---FYD----------L 272
Query: 333 PHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAV 377
PHG+ + P V + A + PER + AE +G D + +A
Sbjct: 273 PHGVCNAILLPHVMEYNAPACPERFADIAEAMGVDTEGLSDEEAA 317
|
Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to L-lactaldehyde. FucO is induced regardless of the respiratory conditions of the culture, remains fully active in the absence of oxygen. In the presence of oxygen, this enzyme becomes oxidatively inactivated by a metal-catalyzed oxidation mechanism. FucO is an iron-dependent metalloenzyme that is inactivated by other metals, such as zinc, copper, or cadmium. This enzyme can also reduces glycol aldehyde with similar efficiency. Beside L-1,2-propanediol, the enzyme is also able to oxidize methanol as alternative substrates. Length = 377 |
| >gnl|CDD|173937 cd08178, AAD_C, C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD) | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 8e-53
Identities = 115/390 (29%), Positives = 172/390 (44%), Gaps = 67/390 (17%)
Query: 35 PGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGD 94
G +D+ K R ++TD + KL V +D L R GV+ E+F V +P+ +
Sbjct: 8 RGSLPYALLDLKGKK--RAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLE 65
Query: 95 SFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVN--APIGK---GK 149
+ + + + S + D IA+GGGS +D K L+Y PE +F D I K
Sbjct: 66 TVRKGLELMNSFKPDTIIALGGGSPMDAAKIMWLFYEHPEVDFEDLAQKFMDIRKRIYKF 125
Query: 150 PVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLP 209
P L+AIPTTSGTGSE T ++ E K +A+ AL P + ++DP +++P
Sbjct: 126 PKLGKKAKLVAIPTTSGTGSEVTPFAVITDEKTGVKYPLADYALTPDMAIVDPELVMTMP 185
Query: 210 ERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQ 269
+ +TA +G D HALE++ ++ ++ T D A A++ I +
Sbjct: 186 KSLTADTGIDALTHALEAYVSVMASDFT-------------------DGLALQAIKLIFE 226
Query: 270 YFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDH 329
Y R+ N D EAR MH A+ +AG+ F NA + +CH +++ + FH
Sbjct: 227 YLPRSYKNGADPEAREKMHNAATIAGMAFANAFLGICHSMAHKLGA---EFH-------- 275
Query: 330 PIIPHGLSVVMSAPAVFNFTAASSP---------------ERHIEAAELLGADVSRVKKA 374
IPHGL+ + P V + A P ER+ E A LG
Sbjct: 276 --IPHGLANAILLPHVIRYNATDPPVKQAAFPQYKYPKAKERYAEIARFLGL-------- 325
Query: 375 DAVPTTSGTGSETTGVSIFDYEPLKAKTGI 404
T E I E LK K GI
Sbjct: 326 -----PGKTDEEKVESLIKAIEELKKKLGI 350
|
Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichia coli and Entamoeba histolytica, this enzyme forms homopolymeric peptides composed of more than 20 protomers associated in a helical rod-like structure. Length = 398 |
| >gnl|CDD|173941 cd08182, HEPD, Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 1e-52
Identities = 94/326 (28%), Positives = 138/326 (42%), Gaps = 37/326 (11%)
Query: 31 IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE 90
I G G ++ + + +RV ++T P + + + L L +FD V+
Sbjct: 4 IIFGRGAIAKLPSLLKGLGGKRVLLVTGPRSAIASGLTDILKPLGTL---VVVFDDVQPN 60
Query: 91 PTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKP 150
P + + +R DA +AVGGGSV+DT KA P D K +
Sbjct: 61 PDLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRI--RNKERE 118
Query: 151 VTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 210
PLIAIPTT+GTGSE T + K +A AL P ++DP TLSLP
Sbjct: 119 NRERALPLIAIPTTAGTGSEVTPFATVWDGKKGIKYSLAGPALYPDTAIVDPELTLSLPP 178
Query: 211 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQY 270
TA +G D HA+ES+ + P S +AR A++ I +
Sbjct: 179 YQTASTGLDALAHAIESYWSK-------------------NSTPESRAYARRAIRLILEN 219
Query: 271 FKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHP 330
+ +LEAR+ M AS +AG+ N H +SYP+ T Y
Sbjct: 220 LPPLLDEPGNLEARAKMAEASLLAGLAISNTRTTAAHAISYPL-----TSR---YG---- 267
Query: 331 IIPHGLSVVMSAPAVFNFTAASSPER 356
+PHGL+ ++ PA+ + PE
Sbjct: 268 -VPHGLACALTLPALLRINLEALPED 292
|
Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria. Length = 367 |
| >gnl|CDD|173950 cd08191, HHD, 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 4e-51
Identities = 96/275 (34%), Positives = 129/275 (46%), Gaps = 17/275 (6%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
AVPTT+GTGSE T V++ K G+A+ L+P + +IDP TL+ P VTA SG D
Sbjct: 126 AVPTTAGTGSEVTPVAVLTDPDNAMKVGVASPHLRPAIAIIDPELTLTCPPGVTADSGAD 185
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+ESFTA+ R P P Y G+N ++D++AR A++ I + RAV + D
Sbjct: 186 ALTHAIESFTAMD---RNPFPDGD-ADHVYSGKNALTDLFAREAIRLIGRSLPRAVRDGD 241
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEAR+ M LA+ +AG+ FG AG H L YP+ T HG V
Sbjct: 242 DLEARTDMMLAALLAGLAFGTAGTAAVHALQYPVGALTHT-------------SHGFGVA 288
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
P V F + E E +LG + V + + I L
Sbjct: 289 ALLPYVMRFNLPARREEFAEIGRVLGVAAGDHSADEQAAAAITRVEALLAAIGIPTTLAA 348
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLA 650
LG T AD+ + L R+ K PR EED
Sbjct: 349 LGVTEADLDGVAAQALAVTRLIKNNPRPLDEEDYR 383
|
6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Length = 386 |
| >gnl|CDD|173947 cd08188, Fe-ADH4, Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 4e-49
Identities = 106/355 (29%), Positives = 164/355 (46%), Gaps = 56/355 (15%)
Query: 31 IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE 90
I G G + G + A++V +++DP + K V ++SL G+++ +F V
Sbjct: 9 IIFGRGALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPN 68
Query: 91 PTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK-----AANLYYCDPEAEFLDY--VNA 143
P + + + CD IAVGGGS ID K A+N LD+ V+
Sbjct: 69 PRDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASN------GGHILDFEGVDK 122
Query: 144 PIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPL 203
+T PL PLI IPTT+G+G++ + +I K K I +++L P + LIDP
Sbjct: 123 -------ITRPLPPLICIPTTAGSGADVSQFAIITDTERKVKMAIISKSLVPDIALIDPE 175
Query: 204 HTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFA 263
++P +TA +G D HA+E++ + +P++D+ A A
Sbjct: 176 TLTTMPPELTAATGLDALTHAIEAYVSN-------------------ASSPLTDLHALEA 216
Query: 264 LQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPA 323
++ I A+ N DLEAR M LAS AG+ F NA + H +++ +
Sbjct: 217 IRLIAANLPPAIANPTDLEARESMMLASLQAGLAFSNAILGAVHAMAHSLG--------- 267
Query: 324 GYSDDHPIIPHGLSVVMSAPAV--FNFTAASSPERHIEAAELLGADVSRVKKADA 376
G D +PHG + P V FN+ AA PER+ AE LG DV + +A
Sbjct: 268 GLLD----LPHGECNAILLPHVMEFNYPAA--PERYARIAEALGLDVRGLTTEEA 316
|
Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. Length = 377 |
| >gnl|CDD|173948 cd08189, Fe-ADH5, Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 6e-49
Identities = 106/350 (30%), Positives = 160/350 (45%), Gaps = 40/350 (11%)
Query: 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV 89
+ +G G ++ + + ++V ++TD L KL + L++L G+++ ++D V
Sbjct: 6 KLFVGSGSLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPP 65
Query: 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK 149
+PT ++ R CDA +AVGGGSVID KA +P+ G K
Sbjct: 66 DPTIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLT----GLLK 121
Query: 150 PVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLP 209
V PL PL AIPTT+GTGSE T ++ K I++ L P +DP TL LP
Sbjct: 122 -VKKPLPPLFAIPTTAGTGSEVTIAAVISDPETHEKYAISDPRLLPKAAALDPRLTLGLP 180
Query: 210 ERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQ 269
+TA +G D HA+E++ P SD +A A++ I +
Sbjct: 181 PHITAATGMDALTHAVEAYIGR-------------------NATPESDAYALAAIKLIFE 221
Query: 270 YFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDH 329
+A + +LEAR M LAS AG+ F AGV H +++ + G +
Sbjct: 222 NLPKAYEDGSNLEAREAMALASYYAGLAFTRAGVGYVHAIAHQLGG---VYG-------- 270
Query: 330 PIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLG---ADVSRVKKADA 376
IPHGL+ + P V F ++ +R E A+ LG A S A A
Sbjct: 271 --IPHGLANAIVLPHVLEFYGDAAEDRLAELADALGLGDAGESDSDLAAA 318
|
Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. Length = 374 |
| >gnl|CDD|215932 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 9e-48
Identities = 77/274 (28%), Positives = 116/274 (42%), Gaps = 75/274 (27%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSE T +++ E K GI + L P L ++DP TL+LP R+TA +G D
Sbjct: 125 AIPTTAGTGSEVTPLAVITDEEGGFKMGIGSPKLLPDLAIVDPELTLTLPPRLTAATGMD 184
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++ + +G NP++D A A++ I + RAV + +
Sbjct: 185 ALAHAIEAYVS-------------------KGANPLTDALALEAIRLIAENLPRAVADPE 225
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEAR++M LAS +AG+ F NAG+ H L++ + G FH IPHG +
Sbjct: 226 DLEARANMLLASTLAGLAFSNAGLGAAHALAHALGG---LFH----------IPHGEANA 272
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P + + + L
Sbjct: 273 ILLPELL------------------------------------------RDLGLPTSLSD 290
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDL 649
LG T D+ L L PR + ED+
Sbjct: 291 LGITEEDLDKLAEAALRDGC-LLTNPRPLTAEDV 323
|
Length = 323 |
| >gnl|CDD|173952 cd08193, HVD, 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 1e-47
Identities = 99/279 (35%), Positives = 141/279 (50%), Gaps = 34/279 (12%)
Query: 377 VPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
VPTT+GTGSE T ++I E LK G+ + L P L ++DP TL LP +TA +G D
Sbjct: 131 VPTTAGTGSEVTPIAIVTTPETLKV--GVVSPHLLPDLAILDPELTLGLPPHITAATGID 188
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++T+ + A NP+SD+ A AL+ + RAV + D
Sbjct: 189 AMVHAIEAYTSR--------------KKA----NPLSDLLALEALRLLGANIPRAVKDGD 230
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEAR M L + AG F NA V H L+YP+ G FH IPHGLS
Sbjct: 231 DLEAREAMLLGAMYAGQAFANAPVAAVHALAYPLGG---KFH----------IPHGLSNA 277
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V F A ++ ER+ E A+ LG D++ +A + L D + + + I L+
Sbjct: 278 LVLPHVLRFNAPAAEERYAELADALGPDLAGASDEEAAEALIDAMEALVADLGIPQRLRE 337
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
+G T D+P L + Q R+ PRE +EED ++
Sbjct: 338 VGVTEDDLPMLAEDAMKQTRLLVNNPRELTEEDALAIYR 376
|
5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene. Length = 376 |
| >gnl|CDD|237515 PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 7e-46
Identities = 111/363 (30%), Positives = 164/363 (45%), Gaps = 94/363 (25%)
Query: 44 DMVNMKAQRVCVMTDPHLSKLAPVKATLDSL--TRHGVKFELFDKVRVEPTGDSFLEATK 101
++ K R ++TD + +L V D L +GV++E+F +V +PT + + +
Sbjct: 476 ELDGKK--RAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAE 533
Query: 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLD------------YVNAPIG-KG 148
+RS + D IA+GGGS +D K L+Y PE +F D Y +G K
Sbjct: 534 LMRSFKPDTIIALGGGSPMDAAKIMWLFYEHPETDFEDLAQKFMDIRKRIYKFPKLGKKA 593
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVS-IFDYEPLKAKTG----IANRALKPTLGLIDPL 203
K L+AIPTTSGTGSE T + I D KTG +A+ L P + ++DP
Sbjct: 594 K--------LVAIPTTSGTGSEVTPFAVITD-----DKTGVKYPLADYELTPDVAIVDPN 640
Query: 204 HTLSLPERVTAYSGFDVFCHALESFT---ALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
+++P+ +TA +G D HALE++ A Y TD L
Sbjct: 641 LVMTMPKSLTADTGIDALTHALEAYVSVMASDY-------TDGL---------------- 677
Query: 261 RFALQTIR---QYFKRAVYN-QDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGN 316
ALQ I+ +Y R+ N D EAR MH AS +AG+ F NA + +CH +++ +
Sbjct: 678 --ALQAIKLVFEYLPRSYKNGAKDPEAREKMHNASTIAGMAFANAFLGICHSMAHKLGA- 734
Query: 317 VKTFHPAGYSDDHPIIPHGLSVVMSAPAV--FN------FTAAS------SPERHIEAAE 362
FH IPHG + + P V +N A + ER+ E A
Sbjct: 735 --EFH----------IPHGRANAILLPHVIRYNATDPPKQAAFPQYEYPRADERYAEIAR 782
Query: 363 LLG 365
LG
Sbjct: 783 HLG 785
|
Length = 862 |
| >gnl|CDD|173951 cd08192, Fe-ADH7, Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 3e-45
Identities = 104/340 (30%), Positives = 150/340 (44%), Gaps = 39/340 (11%)
Query: 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV 89
IR G G +E+ + + +R ++TDP L+ L V L L G+ LFD+V
Sbjct: 4 RIRFGAGAIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPP 63
Query: 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK 149
PT + R+ CD IA GGGS +D KA L DY I G
Sbjct: 64 NPTEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVAL-MAGHPGPLWDY--EDIEGGW 120
Query: 150 P-VTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
P +T + PLIAIPTT+GTGSE ++ E K I + L P + DP TL L
Sbjct: 121 PRITDAIPPLIAIPTTAGTGSEVGRAAVITDEDTGRKLIIFSPHLLPKAAICDPELTLGL 180
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P +TA +G D H +E++ + P + NP++D A L+ I
Sbjct: 181 PAGLTAATGMDALTHCIEAYLS----------------PGF---NPMADGIALEGLRLIS 221
Query: 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 328
++ +RAV + DLEAR M +A++M + F G+ H LS+P+ H
Sbjct: 222 RHLERAVRDGGDLEARGGMMMAASMGAMAF-QKGLGAVHSLSHPLGALYNL-H------- 272
Query: 329 HPIIPHGL--SVVMSAPAVFNFTAASSPERHIEAAELLGA 366
HGL +V++ FN A + A +G
Sbjct: 273 -----HGLLNAVLLPYVLRFNRPAIEEKIARLARALAMGL 307
|
NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the commercial surfactant linear alkylbenzenesulfonate (LAS) and shorten the side chain by beta-oxidation to yield sulfophenylcarboxylates (SPC). Parvibaculum lavamentivorans utilizes 3-C12-LAS as the sole carbon and energy source, and excretes largely 4-C6-SPC. Length = 370 |
| >gnl|CDD|173944 cd08185, Fe-ADH1, Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 6e-45
Identities = 83/280 (29%), Positives = 135/280 (48%), Gaps = 35/280 (12%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+ TT+GTGSE ++ K K G+ + A P + ++DP L++P +TAY+GFD
Sbjct: 135 AITTTAGTGSEADPWAVITNPETKEKIGLGHPATFPKISIVDPELMLTVPPHLTAYTGFD 194
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
F HA E++ A NP+SD+ A A++ I +Y RAV +
Sbjct: 195 AFFHAFEAYIA-------NNA------------NPMSDMLALEAIELIAKYLPRAVKDGS 235
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEAR M A+ + G+ N+G H L + +SG HP +PHG +
Sbjct: 236 DLEAREKMAWANTLGGMVEANSGCTSPHALEHALSG----LHPD--------LPHGAGLA 283
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
M +PA F F A +PE+ A A+ + ++ +A + + +R + ++ +++ L
Sbjct: 284 MLSPAYFEFFARKAPEKFAFVAR---AEAAGLEDEEAAEDFIEALRKLLKRIGLDDLLSD 340
Query: 616 LGYTSADIPALV-TGTLPQHRITKLAPREQSEEDLANLFE 654
LG T DIP L + + P E + ED+ ++E
Sbjct: 341 LGVTKEDIPKLADNARETMGGLFEADPAELTREDIEEIYE 380
|
Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea. Length = 380 |
| >gnl|CDD|173953 cd08194, Fe-ADH6, Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 6e-44
Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 33/252 (13%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSE T ++ K + AL P ++DP TL+ P RVTA +G D
Sbjct: 127 AIPTTAGTGSEVTRFTVITDTKTDEKMLLKGLALLPKAAIVDPELTLTSPPRVTAATGID 186
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++ + R A P++D++A A++ I + + A N D
Sbjct: 187 ALTHAIEAYVS---------------RKA----QPMTDLFALSAIKLIGKNLRTAYLNPD 227
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
+ EAR M L + AG+ F NA V L HG+S PI FH +PHGLS
Sbjct: 228 NREAREEMMLGATEAGIAFSNASVALVHGMSRPIGAL---FH----------VPHGLSNA 274
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
M PAV F+ S+PER+ + A +G +A + L + ++ ++++ L+
Sbjct: 275 MLLPAVTEFSLPSAPERYADIARAMGEANEGDSDREAAEKLIEALKELNRELEVPT-LRE 333
Query: 616 LGYTSADIPALV 627
G AL+
Sbjct: 334 YGIDKDAFMALI 345
|
Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. Length = 375 |
| >gnl|CDD|173940 cd08181, PPD-like, 1,3-propanediol dehydrogenase-like (PPD) | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 1e-43
Identities = 84/294 (28%), Positives = 135/294 (45%), Gaps = 40/294 (13%)
Query: 72 DSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131
+L G+++E+FD+V P+ ++ +EA + + D I +GGGS +D KA +
Sbjct: 48 KALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIK 107
Query: 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANR 191
+P+ + Y + + P++AIPTT+GTGSE T S+ K G +
Sbjct: 108 NPDLKVELYFRS-------KYLKALPVVAIPTTAGTGSEVTQYSVLTDHEEGTKKGFGHD 160
Query: 192 ALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQG 251
+ P L +DP +TL+LP+ VT + D HA+E + L +
Sbjct: 161 LIFPKLAFLDPKYTLTLPKEVTINTALDALSHAVEGY---------------LSNKS--- 202
Query: 252 QNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSY 311
P SD+ A+ AL+ ++ + + N+ D EAR + LAS +AG+ G L HGL Y
Sbjct: 203 -TPYSDMLAKEALELFKECLPKLLENELDEEAREKLMLASTLAGMVIAQTGTTLPHGLGY 261
Query: 312 PISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLG 365
P++ IPHGL+ + P PE + +LLG
Sbjct: 262 PLT----YEKG---------IPHGLANGIFLPEYLELAKEQIPE-KVFILKLLG 301
|
1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion. Length = 357 |
| >gnl|CDD|173945 cd08186, Fe-ADH8, Iron-containing alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 9e-43
Identities = 96/321 (29%), Positives = 140/321 (43%), Gaps = 53/321 (16%)
Query: 44 DMVNMKAQRVCVMTDPHLSK----LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEA 99
D+ + +V ++T K V+ LD HG+++ L++KV PT D EA
Sbjct: 20 DLKSKGISKVLLVTGKSAYKKSGAWDKVEPALD---EHGIEYVLYNKVTPNPTVDQVDEA 76
Query: 100 TKFVRSVQCDAFIAVGGGSVIDTCKAAN--LYYCDPEAEFLDYVNAPIGKGKPVTVPLKP 157
K R A IA+GGGS ID+ K+A L + A L + K P
Sbjct: 77 AKLGREFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLY-------EFKFTPEKALP 129
Query: 158 LIAIPTTSGTGSETTG---VSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTA 214
LIAI T GTG+E SI + E K GIA + P + DP T +LP T
Sbjct: 130 LIAINLTHGTGTEVDRFAVASIDETE---EKPGIAYDCIYPDYSIDDPALTTTLPPDQTI 186
Query: 215 YSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA 274
Y+ D H +E+ T NP S + A+ A++ I +Y +A
Sbjct: 187 YTSIDALNHVVEAATTTT-------------------ANPYSILLAKEAVRLIAEYLPKA 227
Query: 275 VYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPH 334
+ D+L+AR + ASA+AG+ N +HL H L +P+S P +PH
Sbjct: 228 LEEPDNLQARYWLLYASAIAGIAIDNGLLHLTHALEHPLSAL------------KPDLPH 275
Query: 335 GLSVVMSAPAVFNFTAASSPE 355
G + + PAV ++PE
Sbjct: 276 GAGLAILLPAVVKHIYPATPE 296
|
Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover. Length = 383 |
| >gnl|CDD|173938 cd08179, NADPH_BDH, NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 3e-42
Identities = 96/337 (28%), Positives = 160/337 (47%), Gaps = 51/337 (15%)
Query: 47 NMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS 105
+K ++ ++T + K + L G++ E+F+ V +P+ ++ L+ + +R
Sbjct: 20 TLKGKKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE 79
Query: 106 VQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVP-LKP---LIAI 161
+ D IA+GGGS ID KA ++Y PE F D V KP T+P L+ AI
Sbjct: 80 FEPDWIIALGGGSPIDAAKAMWIFYEYPELTFEDIV-------KPFTLPELRNKARFCAI 132
Query: 162 PTTSGTGSETTGVS-IFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDV 220
P+TSGT +E T S I DYE K +A+ + P + ++DP T ++P ++TA +G D
Sbjct: 133 PSTSGTATEVTAFSVITDYEK-GIKYPLADFEITPDVAIVDPELTETMPPKLTAETGMDA 191
Query: 221 FCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDD 280
HA+E++ + N +D A A++ I + ++ Y DD
Sbjct: 192 LTHAIEAYVS------------TAA-------NDFTDPLALHAIEMIFENLPKS-YEGDD 231
Query: 281 LEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340
EAR MH A MAG+ F NA + + H +++ F +PHGL+ +
Sbjct: 232 KEAREKMHNAQCMAGMAFSNALLGIVHSMAHKTGA---EFG----------VPHGLANAI 278
Query: 341 SAPAV--FNFTAASSPERHIEAAELLGAD--VSRVKK 373
P V FN A + +R+ A+ G + + V++
Sbjct: 279 YLPYVIQFNSKDAEAKKRYAGLAKEEGVEDLIEAVRE 315
|
NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold. Length = 375 |
| >gnl|CDD|173942 cd08183, Fe-ADH2, Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 3e-40
Identities = 97/338 (28%), Positives = 143/338 (42%), Gaps = 45/338 (13%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
I G GV +E+ + +RV ++T + A + +++L G++ V
Sbjct: 2 PRIHFGRGVAKELP-ALAAELGRRVLLVTGASSLRAAWL---IEALRAAGIEVTHV-VVA 56
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEA--EFLDYVNAPIG 146
EP+ + A R+ CD IA+GGGSVID KA +P + ++L+ V G
Sbjct: 57 GEPSVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGV----G 112
Query: 147 KGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTL 206
+G P+ P P IAIPTT+GTGSE T ++ K + + + P + ++DP TL
Sbjct: 113 RGLPLDGPPLPFIAIPTTAGTGSEVTKNAVISVPGAGFKVSLRHPRMLPDVAIVDPELTL 172
Query: 207 SLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266
S P VTA SG D LE + P NP++D R L
Sbjct: 173 SCPRSVTAASGLDALTQLLEPYL---------SPR----------ANPLTDALCRSGLPR 213
Query: 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYS 326
+ +RA N +D AR M LAS + G+ NAG+ HGL+ PI G
Sbjct: 214 GARALRRACENGEDAAARDDMALASLLGGIALANAGLGAVHGLAGPIGGLFD-------- 265
Query: 327 DDHPIIPHGL--SVVMSAPAVFNFTAASSPERHIEAAE 362
PHG + ++ N A A
Sbjct: 266 -----APHGAICATLLPPVLAANIRALRQRGPGNPALA 298
|
Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria. Length = 374 |
| >gnl|CDD|131686 TIGR02638, lactal_redase, lactaldehyde reductase | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 8e-40
Identities = 101/338 (29%), Positives = 154/338 (45%), Gaps = 40/338 (11%)
Query: 44 DMVNMKAQR----VCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEA 99
D+V+ +R V+TD L K D L G+ +ELFD+V+ PT
Sbjct: 19 DIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAG 78
Query: 100 TKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLI 159
++ D IA+GGGS IDT KA + +P EF D + G P P P+I
Sbjct: 79 VAAFKASGADYLIAIGGGSPIDTAKAIGIISNNP--EFADVRSLE-GVA-PTKKPGVPII 134
Query: 160 AIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 219
AIPTT+GT +E T + E K K + P + +ID S+P+ +TA +G D
Sbjct: 135 AIPTTAGTAAEVTINYVITDEENKRKFVCVDPHDIPDVAVIDAEMMYSMPKSLTAATGMD 194
Query: 220 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 279
HA+E + T G ++D+ A++ I ++ + AV
Sbjct: 195 ALTHAIEGYI-------TK------------GAWELTDMLHLKAIEIIARWLRSAVEGGK 235
Query: 280 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 339
DLEAR M L +AG+GF N G+ L HG+++P+ A Y+ PHG++
Sbjct: 236 DLEAREQMALGQYVAGMGFSNVGLGLVHGMAHPLG--------AFYN-----TPHGVANA 282
Query: 340 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAV 377
+ P V F A + E++ E A+ +G + +A
Sbjct: 283 ILLPHVMEFNAEFTGEKYREIAKAMGVKTEGMSDEEAR 320
|
This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase [Energy metabolism, Sugars]. Length = 379 |
| >gnl|CDD|173939 cd08180, PDD, 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 1e-37
Identities = 77/283 (27%), Positives = 118/283 (41%), Gaps = 68/283 (24%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTTSGTGSE T ++ K + + L P + ++DP ++P VTA +G D
Sbjct: 114 AIPTTSGTGSEVTSFAVITDPETGVKYPLVDDELLPDIAILDPELVKTVPPAVTADTGMD 173
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
V HALE++ + N +D A A++ + +Y +A + D
Sbjct: 174 VLTHALEAYVS-------------------TDANDFTDALAEKAIKLVFEYLPKAYKDGD 214
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEAR MH AS MAG+ F NAG+ + H L++ + G FH IPHG +
Sbjct: 215 DLEAREKMHNASCMAGMAFNNAGLGINHSLAHALGG---KFH----------IPHGRANA 261
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V F L + ++ ++ I LK
Sbjct: 262 ILLPYVIEF-------------------------------LIEAIKQLKKKLNIPETLKE 290
Query: 616 LGYTSAD----IPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
LG + I + L + T PR+ ++EDL + E
Sbjct: 291 LGVDKEEFEAAIDEMAENAL-KDACTPTNPRKPTKEDLKEILE 332
|
1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinate synthase-like fold. Length = 332 |
| >gnl|CDD|173935 cd08176, LPO, Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 4e-36
Identities = 78/279 (27%), Positives = 127/279 (45%), Gaps = 33/279 (11%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+ TT+GT SE T + E K K I + P + + DP + +P +TA +G D
Sbjct: 132 AINTTAGTASEVTINYVITDEERKVKMVIVDPNDIPIVAVNDPELMVGMPPGLTAATGMD 191
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++ + G NP++D A A++ I + +RAV N
Sbjct: 192 ALTHAIEAYVST-------------------GANPITDACALKAIELIAKNLRRAVANGK 232
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEAR M A +AG+ F NAG+ H +++ + G + +PHG+
Sbjct: 233 DLEAREGMAYAQYLAGMAFNNAGLGYVHSMAHQLGG---FYD----------LPHGVCNA 279
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V + A + PER + AE +G D + +A + D VR + + I GL+
Sbjct: 280 ILLPHVMEYNAPACPERFADIAEAMGVDTEGLSDEEAAEAAIDAVRALSEDVGIPAGLRE 339
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
LG D L L + PR+ ++ED+ +++
Sbjct: 340 LGVKEEDFELLAENAL-KDACAGGNPRKATKEDIIAIYK 377
|
Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to L-lactaldehyde. FucO is induced regardless of the respiratory conditions of the culture, remains fully active in the absence of oxygen. In the presence of oxygen, this enzyme becomes oxidatively inactivated by a metal-catalyzed oxidation mechanism. FucO is an iron-dependent metalloenzyme that is inactivated by other metals, such as zinc, copper, or cadmium. This enzyme can also reduces glycol aldehyde with similar efficiency. Beside L-1,2-propanediol, the enzyme is also able to oxidize methanol as alternative substrates. Length = 377 |
| >gnl|CDD|185351 PRK15454, PRK15454, ethanol dehydrogenase EutG; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-34
Identities = 102/323 (31%), Positives = 139/323 (43%), Gaps = 38/323 (11%)
Query: 34 GPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTG 93
GPG G + + VM D L + SL G+ L+ EP
Sbjct: 33 GPGAVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCI 92
Query: 94 DSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTV 153
A +R CD IA GGGSV+D KA L +P++ + V
Sbjct: 93 TDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSE------TSVLQ 146
Query: 154 PLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVT 213
P PLIAIPTT+GTGSETT V++ K +A+ +L P + ++D T +P VT
Sbjct: 147 PRLPLIAIPTTAGTGSETTNVTVIIDAVSGRKQVLAHASLMPDVAILDAALTEGVPSHVT 206
Query: 214 AYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKR 273
A +G D HA+E+++AL T P +D A A+ I + +
Sbjct: 207 AMTGIDALTHAIEAYSALNAT-------------------PFTDSLAIGAIAMIGKSLPK 247
Query: 274 AVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIP 333
AV DL AR M LAS MAG+ F +AG+ LCH +++ H IP
Sbjct: 248 AVGYGHDLAARESMLLASCMAGMAFSSAGLGLCHAMAHQPGA---ALH----------IP 294
Query: 334 HGLSVVMSAPAVFNFTAASSPER 356
HGL+ M P V F ER
Sbjct: 295 HGLANAMLLPTVMEFNRMVCRER 317
|
Length = 395 |
| >gnl|CDD|173947 cd08188, Fe-ADH4, Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 3e-33
Identities = 82/286 (28%), Positives = 129/286 (45%), Gaps = 47/286 (16%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
+PTT+G+G++ + +I K K I +++L P + LIDP ++P +TA +G D
Sbjct: 132 CIPTTAGSGADVSQFAIITDTERKVKMAIISKSLVPDIALIDPETLTTMPPELTAATGLD 191
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++ + +P++D+ A A++ I A+ N
Sbjct: 192 ALTHAIEAYVSN-------------------ASSPLTDLHALEAIRLIAANLPPAIANPT 232
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DLEAR M LAS AG+ F NA + H +++ + G D +PHG
Sbjct: 233 DLEARESMMLASLQAGLAFSNAILGAVHAMAHSLG---------GLLD----LPHGECNA 279
Query: 556 MSAPAV--FNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGL 613
+ P V FN+ AA PER+ AE LG DV + +A + + VR + + L
Sbjct: 280 ILLPHVMEFNYPAA--PERYARIAEALGLDVRGLTTEEAALAVIEAVRRLRAALGVPETL 337
Query: 614 KVLGYTSADIPALVTGTLPQHRITKLA-----PREQSEEDLANLFE 654
LG DIP L K A PR+ + ED+ ++E
Sbjct: 338 GDLGVKREDIPLLAR------NALKDACMVTNPRDATVEDIEAIYE 377
|
Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. Length = 377 |
| >gnl|CDD|173937 cd08178, AAD_C, C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD) | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 7e-33
Identities = 72/262 (27%), Positives = 115/262 (43%), Gaps = 49/262 (18%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTTSGTGSE T ++ E K +A+ AL P + ++DP +++P+ +TA +G D
Sbjct: 136 AIPTTSGTGSEVTPFAVITDEKTGVKYPLADYALTPDMAIVDPELVMTMPKSLTADTGID 195
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HALE++ ++ ++ T D A A++ I +Y R+ N
Sbjct: 196 ALTHALEAYVSVMASDFT-------------------DGLALQAIKLIFEYLPRSYKNGA 236
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
D EAR MH A+ +AG+ F NA + +CH +++ + FH IPHGL+
Sbjct: 237 DPEAREKMHNAATIAGMAFANAFLGICHSMAHKLGA---EFH----------IPHGLANA 283
Query: 556 MSAPAVFNFTAASSP---------------ERHIEAAELLGADVSRVKKADAGKLLADTV 600
+ P V + A P ER+ E A LG + + L +
Sbjct: 284 ILLPHVIRYNATDPPVKQAAFPQYKYPKAKERYAEIARFLGLPGK--TDEEKVESLIKAI 341
Query: 601 RGYMDQMKIENGLKVLGYTSAD 622
++ I +K G D
Sbjct: 342 EELKKKLGIPKSIKDAGVDEED 363
|
Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichia coli and Entamoeba histolytica, this enzyme forms homopolymeric peptides composed of more than 20 protomers associated in a helical rod-like structure. Length = 398 |
| >gnl|CDD|132446 TIGR03405, Phn_Fe-ADH, phosphonate metabolism-associated iron-containing alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 1e-32
Identities = 81/281 (28%), Positives = 110/281 (39%), Gaps = 38/281 (13%)
Query: 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPL-KPLIAIPTTSG 166
CD IA+GGGSVIDT K + E D + + G+ PL+AIPTT+G
Sbjct: 81 CDLVIALGGGSVIDTAKVLAVGLRRGE---FDLLLQLLRNGRDFAPTARLPLVAIPTTAG 137
Query: 167 TGSETTG-VSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 225
TGSE T +++D E K + P ++D LSLP T +G D HAL
Sbjct: 138 TGSEVTPWATVWDAEN-SKKYSLHLPFTYPEAAIVDAALMLSLPREHTLSTGLDALSHAL 196
Query: 226 ESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARS 285
ES + NPVS A A I + + DL RS
Sbjct: 197 ESIWNV-------------------NANPVSRGLAIQAAADISRALPEVLAQPGDLALRS 237
Query: 286 HMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAV 345
M LA+ AG+ F N L H +SY + T +PHG++ + P V
Sbjct: 238 DMALAALKAGLAFSNTKTALAHSISYEM-----TLRHG--------VPHGIACSFTLPTV 284
Query: 346 FNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSE 386
+P R + G S + A T G +
Sbjct: 285 LRTALGRNPSRDALLQAVFGDTASAPARLRAFLDTLGVKTR 325
|
This small clade of iron-containing alcohol dehydrogenases of the pfam00465 family is found in genomic contexts indicating a role in the metabolism of phosphonates. In Delftia acidovorans SPH-1, the gene ZP_01580650.1 is adjacent to and running in the same direction as ZP_01580649.1 encoding the enzyme phosphonatase (PhnX, TIGR01422). Upstream are also found genes encoding components of a phosphonate ABC transport complex. In Ralstonia eutropha H16 and Verminephrobacter eiseniae EF01-2 the dehydrogenase is followed by a homolog of the PhnB gene, a putative phosphonate-specific MFS-type transporter. In Azoarcus BH72 the gene is preceded by Phosphoenolpyruvate phosphomutase (aepX) and a putative phosphonopyruvate decarboxylase (aepY), two genes involved in the biosynthesis of phosphonoacetaldehyde (Pald). Ususally these two are accompanied by a specific transaminase, AepZ, which converts Pald to 2-aminoethylphosphonate (2-AEP). 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis. Length = 355 |
| >gnl|CDD|173946 cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 1e-31
Identities = 75/293 (25%), Positives = 121/293 (41%), Gaps = 50/293 (17%)
Query: 72 DSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK--AANLY 129
SL G++ V P ++ E + + + D +AVGGGSVID+ K AA
Sbjct: 51 ASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAP 110
Query: 130 YCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIA 189
Y + + D+ + L P+ + T + TGSE G ++ E K K G
Sbjct: 111 Y---DGDVWDFF----TGKAKIEKAL-PVGTVLTLAATGSEMNGGAVITNEETKEKLGFG 162
Query: 190 NRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES-FTALPYTERTPCPTDPLLRPA 248
+ L+P ++DP T +LP+ TA D+F H +E FT
Sbjct: 163 SPLLRPKFSILDPELTYTLPKYQTANGIVDIFSHVMEQYFT------------------- 203
Query: 249 YQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMA--G-VGFGNAGVHL 305
Y + D A L+T+ + +A+ N +D EAR+++ A+ +A G +G G
Sbjct: 204 YPVDADLQDRLAEGLLKTVIENGPKALKNPEDYEARANIMWAATLALNGLIGVGRPQDWA 263
Query: 306 CHGLSYPISGNVKTFHPAGYSDDHPIIPHG--LSVVMSAPAVFNFTAASSPER 356
H + + +S D I HG L++V PA + P +
Sbjct: 264 THMIEHELS---------ALYD----IAHGAGLAIVT--PAWMRYVYKEKPAK 301
|
The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases. Length = 382 |
| >gnl|CDD|173940 cd08181, PPD-like, 1,3-propanediol dehydrogenase-like (PPD) | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-31
Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 33/206 (16%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSE T S+ K G + + P L +DP +TL+LP+ VT + D
Sbjct: 129 AIPTTAGTGSEVTQYSVLTDHEEGTKKGFGHDLIFPKLAFLDPKYTLTLPKEVTINTALD 188
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E + L + P SD+ A+ AL+ ++ + + N+
Sbjct: 189 ALSHAVEGY---------------LSNKS----TPYSDMLAKEALELFKECLPKLLENEL 229
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
D EAR + LAS +AG+ G L HGL YP++ IPHGL+
Sbjct: 230 DEEAREKLMLASTLAGMVIAQTGTTLPHGLGYPLT----YEKG---------IPHGLANG 276
Query: 556 MSAPAVFNFTAASSPERHIEAAELLG 581
+ P PE + +LLG
Sbjct: 277 IFLPEYLELAKEQIPE-KVFILKLLG 301
|
1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion. Length = 357 |
| >gnl|CDD|173938 cd08179, NADPH_BDH, NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-31
Identities = 75/292 (25%), Positives = 125/292 (42%), Gaps = 55/292 (18%)
Query: 372 KKAD--AVPTTSGTGSETTGVS-IFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERV 428
KA A+P+TSGT +E T S I DYE K +A+ + P + ++DP T ++P ++
Sbjct: 125 NKARFCAIPSTSGTATEVTAFSVITDYEK-GIKYPLADFEITPDVAIVDPELTETMPPKL 183
Query: 429 TAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFK 488
TA +G D HA+E++ + N +D A A++ I +
Sbjct: 184 TAETGMDALTHAIEAYVS------------TAA-------NDFTDPLALHAIEMIFENLP 224
Query: 489 RAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPII 548
++ Y DD EAR MH A MAG+ F NA + + H +++ F +
Sbjct: 225 KS-YEGDDKEAREKMHNAQCMAGMAFSNALLGIVHSMAHKTGA---EFG----------V 270
Query: 549 PHGLSVVMSAPAV--FNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQ 606
PHGL+ + P V FN A + +R+ A+ G + L + VR +
Sbjct: 271 PHGLANAIYLPYVIQFNSKDAEAKKRYAGLAKEEGVE-----------DLIEAVRELNKK 319
Query: 607 MKIENGLKVLGYTS----ADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
+ I K G + L + + T PR+ ++E++ L +
Sbjct: 320 LGIPACFKEYGIDEQEFLEKLDELAENAI-KDACTGTNPRQPTKEEMKKLLK 370
|
NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold. Length = 375 |
| >gnl|CDD|173941 cd08182, HEPD, Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 3e-31
Identities = 79/318 (24%), Positives = 120/318 (37%), Gaps = 41/318 (12%)
Query: 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKAD--AVPTTSGTGSETTGVSIFDYE 396
V+ + E + +R + A+PTT+GTGSE T +
Sbjct: 89 VLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEVTPFATVWDG 148
Query: 397 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCP 456
K +A AL P ++DP TLSLP TA +G D HA+ES+ +
Sbjct: 149 KKGIKYSLAGPALYPDTAIVDPELTLSLPPYQTASTGLDALAHAIESYWSK--------- 199
Query: 457 TDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGN 516
P S +AR A++ I + + +LEAR+ M AS +AG+ N
Sbjct: 200 ----------NSTPESRAYARRAIRLILENLPPLLDEPGNLEARAKMAEASLLAGLAISN 249
Query: 517 AGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEA 576
H +SYP+ T Y +PHGL+ ++ PA+ + PE
Sbjct: 250 TRTTAAHAISYPL-----TSR---YG-----VPHGLACALTLPALLRINLEALPED---- 292
Query: 577 AELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRI 636
L + A + A + + ++ + L T DI LV R+
Sbjct: 293 --LALEAILAAFGAPSAAEAAARIEALLKELGLPTRLAEYIVTREDIARLVAEAFTPERL 350
Query: 637 TKLAPREQSEEDLANLFE 654
P + E DL L E
Sbjct: 351 -DNNPVDLDEADLERLLE 367
|
Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria. Length = 367 |
| >gnl|CDD|173951 cd08192, Fe-ADH7, Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-30
Identities = 78/283 (27%), Positives = 118/283 (41%), Gaps = 48/283 (16%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSE ++ E K I + L P + DP TL LP +TA +G D
Sbjct: 132 AIPTTAGTGSEVGRAAVITDEDTGRKLIIFSPHLLPKAAICDPELTLGLPAGLTAATGMD 191
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
H +E++ + P + NP++D A L+ I ++ +RAV +
Sbjct: 192 ALTHCIEAYLS----------------PGF---NPMADGIALEGLRLISRHLERAVRDGG 232
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL--S 553
DLEAR M +A++M + F G+ H LS+P+ H HGL +
Sbjct: 233 DLEARGGMMMAASMGAMAF-QKGLGAVHSLSHPLGALYNL-H------------HGLLNA 278
Query: 554 VVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGL 613
V++ P V F + E+ A L A AD + ++ I + L
Sbjct: 279 VLL--PYVLRFNRPAIEEKIARLARALAMG----LGGFAD--FADAILALNARLGIPHTL 330
Query: 614 KVLGYTSADIPALVTGTL--PQHRITKLAPREQSEEDLANLFE 654
+ LG D+ + L P H PR + ED L E
Sbjct: 331 RELGVDEDDLDRIAEKALADPSHATN---PRPATAEDYRALLE 370
|
NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the commercial surfactant linear alkylbenzenesulfonate (LAS) and shorten the side chain by beta-oxidation to yield sulfophenylcarboxylates (SPC). Parvibaculum lavamentivorans utilizes 3-C12-LAS as the sole carbon and energy source, and excretes largely 4-C6-SPC. Length = 370 |
| >gnl|CDD|173945 cd08186, Fe-ADH8, Iron-containing alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-29
Identities = 81/297 (27%), Positives = 125/297 (42%), Gaps = 44/297 (14%)
Query: 368 VSRVKKADAVPTTSGTGSETTG---VSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 424
+ A+ T GTG+E SI + E K GIA + P + DP T +L
Sbjct: 124 PEKALPLIAINLTHGTGTEVDRFAVASIDETE---EKPGIAYDCIYPDYSIDDPALTTTL 180
Query: 425 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 484
P T Y+ D H +E+ T NP S + A+ A++ I
Sbjct: 181 PPDQTIYTSIDALNHVVEAATTTT-------------------ANPYSILLAKEAVRLIA 221
Query: 485 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 544
+Y +A+ D+L+AR + ASA+AG+ N +HL H L +P+S
Sbjct: 222 EYLPKALEEPDNLQARYWLLYASAIAGIAIDNGLLHLTHALEHPLSAL------------ 269
Query: 545 HPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKA-DAGKLLADTVRGY 603
P +PHG + + PAV ++PE AELL V +K + + A V +
Sbjct: 270 KPDLPHGAGLAILLPAVVKHIYPATPEI---LAELLRPLVPGLKGVPEEAEKAAKAVEKW 326
Query: 604 MDQMKIENGLKVLGYTSADIPALVT---GTLPQHRITKLAPREQSEEDLANLFENSM 657
+ + I L G+T D+ L T + LAP E S E +A ++ +S+
Sbjct: 327 LFSIGITEKLSDYGFTEGDVEKLTELAVTTPSLKLLLSLAPVEASREVIARIYTDSL 383
|
Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover. Length = 383 |
| >gnl|CDD|237515 PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 1e-28
Identities = 83/279 (29%), Positives = 120/279 (43%), Gaps = 73/279 (26%)
Query: 372 KKAD--AVPTTSGTGSETTGVS-IFDYEPLKAKTG----IANRALKPTLGLIDPLHTLSL 424
KKA A+PTTSGTGSE T + I D KTG +A+ L P + ++DP +++
Sbjct: 591 KKAKLVAIPTTSGTGSEVTPFAVITD-----DKTGVKYPLADYELTPDVAIVDPNLVMTM 645
Query: 425 PERVTAYSGFDVFCHALESFT---ALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQ 481
P+ +TA +G D HALE++ A Y TD L ALQ
Sbjct: 646 PKSLTADTGIDALTHALEAYVSVMASDY-------TDGL------------------ALQ 680
Query: 482 TIR---QYFKRAVYN-QDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFH 537
I+ +Y R+ N D EAR MH AS +AG+ F NA + +CH +++ + FH
Sbjct: 681 AIKLVFEYLPRSYKNGAKDPEAREKMHNASTIAGMAFANAFLGICHSMAHKLGA---EFH 737
Query: 538 PAGYSDDHPIIPHGLSVVMSAPAV--FN------FTAAS------SPERHIEAAELLGAD 583
IPHG + + P V +N A + ER+ E A LG
Sbjct: 738 ----------IPHGRANAILLPHVIRYNATDPPKQAAFPQYEYPRADERYAEIARHLGLP 787
Query: 584 VSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSAD 622
S + + L + ++ I +K G AD
Sbjct: 788 GSTT--EEKVESLIKAIEELKAELGIPMSIKEAGVDEAD 824
|
Length = 862 |
| >gnl|CDD|182595 PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-28
Identities = 94/347 (27%), Positives = 148/347 (42%), Gaps = 62/347 (17%)
Query: 34 GPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTG 93
G G + ++ ++ ++TD L K V D L G+ +E++D V+ PT
Sbjct: 14 GRGAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTI 73
Query: 94 DSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVN----APIGKGK 149
+ E + ++ D IA+GGGS DTCKA + +PE F D + AP K
Sbjct: 74 EVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPE--FADVRSLEGVAPTKK-- 129
Query: 150 PVTVPLKPLIAIPTTSGTGSETT-GVSIFDYEPLKAKTGIANRALK-------PTLGLID 201
P P+IAIPTT+GT +E T I D E R P + +D
Sbjct: 130 ----PSVPIIAIPTTAGTAAEVTINYVITDEE--------KRRKFVCVDPHDIPQVAFVD 177
Query: 202 PLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWAR 261
S+P + A +G D HA+E + +G ++D+
Sbjct: 178 ADMMDSMPPGLKAATGVDALTHAIEGYIT-------------------RGAWALTDMLHL 218
Query: 262 FALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFH 321
A++ I + AV D EA M L +AG+GF N G+ L HG+++P+
Sbjct: 219 KAIEIIAGALRGAVAG--DKEAGEGMALGQYIAGMGFSNVGLGLVHGMAHPLG------- 269
Query: 322 PAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 368
A Y+ PHG++ + P V + A + E++ + A +G V
Sbjct: 270 -AFYN-----TPHGVANAILLPHVMEYNADFTGEKYRDIARAMGVKV 310
|
Length = 382 |
| >gnl|CDD|131686 TIGR02638, lactal_redase, lactaldehyde reductase | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-27
Identities = 82/290 (28%), Positives = 130/290 (44%), Gaps = 37/290 (12%)
Query: 368 VSRVKKAD----AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLS 423
V+ KK A+PTT+GT +E T + E K K + P + +ID S
Sbjct: 123 VAPTKKPGVPIIAIPTTAGTAAEVTINYVITDEENKRKFVCVDPHDIPDVAVIDAEMMYS 182
Query: 424 LPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 483
+P+ +TA +G D HA+E + T G ++D+ A++ I
Sbjct: 183 MPKSLTAATGMDALTHAIEGYI-------TK------------GAWELTDMLHLKAIEII 223
Query: 484 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSD 543
++ + AV DLEAR M L +AG+GF N G+ L HG+++P+ A Y+
Sbjct: 224 ARWLRSAVEGGKDLEAREQMALGQYVAGMGFSNVGLGLVHGMAHPLG--------AFYN- 274
Query: 544 DHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGY 603
PHG++ + P V F A + E++ E A+ +G + +A + V+
Sbjct: 275 ----TPHGVANAILLPHVMEFNAEFTGEKYREIAKAMGVKTEGMSDEEARDAAVEAVKTL 330
Query: 604 MDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653
++ I GL LG DIPAL L T PRE + E++ L+
Sbjct: 331 SKRVGIPEGLSELGVKEEDIPALAEAAL-ADVCTGGNPRETTVEEIEELY 379
|
This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase [Energy metabolism, Sugars]. Length = 379 |
| >gnl|CDD|173927 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH) | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 8e-27
Identities = 84/338 (24%), Positives = 132/338 (39%), Gaps = 62/338 (18%)
Query: 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV 89
I G G ++G ++ R V++D + K + DSL + + +FD V
Sbjct: 3 RIVFGEGAIEKIGEEIKRGGFDRALVVSDEGVVKGV-GEKVADSLKKL-IAVHIFDGVGP 60
Query: 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK 149
PT + EA + R+ + DA IAVGGGS +DT KA
Sbjct: 61 NPTFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAA--------------------- 99
Query: 150 PVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLP 209
+ P+I +PTT+ TGSE + ++ + KTG P + +D T LP
Sbjct: 100 -LLNRGLPIIIVPTTAATGSEVSPKAVI-TDKEGGKTG-FFYPDNPDVVFVDTDITKGLP 156
Query: 210 ERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQ 269
R A G D HALE+++ + P++D A AL+TI +
Sbjct: 157 PRQVASGGVDALSHALEAYST-------------------KKSWPIADALAEKALETIEE 197
Query: 270 YFKRAVYNQDDLEARSHMHLASAMAGVGFGNA---GVHLCHGLSYPISGNVKTFHPAGYS 326
+A D +A + A+ +AG G A G+ H + + ++
Sbjct: 198 DLPKA-IEPGDYDALEKVVWAATLAGNGLFAAKSGGLGAAHAIGHALT----ALEG---- 248
Query: 327 DDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 364
IPHG +V + PAV +PE +
Sbjct: 249 -----IPHGEAVAVGLPAVLKVANDMNPEIEHAIEAVF 281
|
Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H. Length = 332 |
| >gnl|CDD|173948 cd08189, Fe-ADH5, Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 9e-27
Identities = 78/284 (27%), Positives = 120/284 (42%), Gaps = 46/284 (16%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSE T ++ K I++ L P +DP TL LP +TA +G D
Sbjct: 131 AIPTTAGTGSEVTIAAVISDPETHEKYAISDPRLLPKAAALDPRLTLGLPPHITAATGMD 190
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++ P SD +A A++ I + +A +
Sbjct: 191 ALTHAVEAYIGR-------------------NATPESDAYALAAIKLIFENLPKAYEDGS 231
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
+LEAR M LAS AG+ F AGV H +++ + G + IPHGL+
Sbjct: 232 NLEAREAMALASYYAGLAFTRAGVGYVHAIAHQLGG---VYG----------IPHGLANA 278
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V F ++ +R E A+ LG + +D D VR + I L+
Sbjct: 279 IVLPHVLEFYGDAAEDRLAELADALGLGDAGESDSDLAAAFIDAVRELNRTLGIPTTLEA 338
Query: 616 LGYTSADIPALVTGTLPQHRITKLA------PREQSEEDLANLF 653
+ ++DIPA+ R K A P+ E+ +
Sbjct: 339 I--KASDIPAIA------KRALKEANPLYPVPKLMDREECEQIL 374
|
Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. Length = 374 |
| >gnl|CDD|182118 PRK09860, PRK09860, putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 9e-27
Identities = 88/356 (24%), Positives = 149/356 (41%), Gaps = 44/356 (12%)
Query: 26 MASSTI------RIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGV 79
MA+ST IG + M + R ++TD L+KL +L +
Sbjct: 1 MAASTFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNI 60
Query: 80 KFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLD 139
++D + PT ++ K ++ CD+ I++GGGS D K L + + D
Sbjct: 61 FSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAAN-GGDIRD 119
Query: 140 YVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGL 199
Y P P+IAI TT+GT SE T I E K I ++ + P L +
Sbjct: 120 YEGVDRSAK-----PQLPMIAINTTAGTASEMTRFCIITDEARHIKMAIVDKHVTPLLSV 174
Query: 200 IDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259
D + +P+ +TA +G D HA+E++ ++ T P++D
Sbjct: 175 NDSSLMIGMPKSLTAATGMDALTHAIEAYVSIAAT-------------------PITDAC 215
Query: 260 ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKT 319
A A+ I + AV + + +AR M A +AG+ F NA + H +++ + G
Sbjct: 216 ALKAVTMIAENLPLAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGG---- 271
Query: 320 FHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKAD 375
F+ +PHG+ + P V F + + R + A +G +V+ A+
Sbjct: 272 FYN---------LPHGVCNAVLLPHVQVFNSKVAAARLRDCAAAMGVNVTGKNDAE 318
|
Length = 383 |
| >gnl|CDD|211989 TIGR04266, NDMA_methanol, NDMA-dependent methanol dehydrogenase | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-26
Identities = 98/351 (27%), Positives = 156/351 (44%), Gaps = 45/351 (12%)
Query: 33 IGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPT 92
+G G +G++ N+ +R +MT L ++ + GV+ L+DKV P
Sbjct: 21 LGVGAHDIIGVEAKNLGFKRTLLMTT-GLRGSGIIEELKGKIEYQGVEVVLYDKVESNPK 79
Query: 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVT 152
+ +EA +S +CD+ I++GGGS D K A + A +N G K
Sbjct: 80 DYNVMEAAALYQSEKCDSIISIGGGSSHDAAKGARVVI----AHDGRNINEFEGFAKSTN 135
Query: 153 VPLKPLIAIPTTSGTGSETTGVSIF----DYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
P IA+ TT+GTGSET+ + D + G + A TL + DPL +
Sbjct: 136 KQNPPHIAVSTTAGTGSETSWAYVITDTSDMDQPHKWVGF-DEATIVTLAIDDPLLYYTC 194
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P+ TAY GFDV H E PY R P L A ++++ +
Sbjct: 195 PQHFTAYCGFDVLAHGSE-----PYVSRLDFA--PSLGNAL------------YSVELVA 235
Query: 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 328
++ + AV+ +L+AR M A +AG F + G+ + H +S+ +S + D
Sbjct: 236 KHLREAVFEPRNLKAREGMMNAQYIAGQAFNSGGLGIVHSISHAVS---------AFFDS 286
Query: 329 HPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSR---VKKADA 376
H HGL+ ++ P V+ + S ER+ + A +G D V+ ADA
Sbjct: 287 H----HGLNNAIALPRVWEYNLPSRYERYAQLATAMGVDTRNMTTVQAADA 333
|
Members of this family belong to the iron-dependent alcohol dehydrogenase family (see pfam00465). The NADP(H) cofactor is bound too tightly for exchange (although non-convalently), so enzymatic activity depends on a second substrate or electron carrier. The radical SAM-modified natural product mycofactocin is proposed to fill this role. Length = 420 |
| >gnl|CDD|173942 cd08183, Fe-ADH2, Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 68/260 (26%), Positives = 105/260 (40%), Gaps = 39/260 (15%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSE T ++ K + + + P + ++DP TLS P VTA SG D
Sbjct: 126 AIPTTAGTGSEVTKNAVISVPGAGFKVSLRHPRMLPDVAIVDPELTLSCPRSVTAASGLD 185
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
LE + P NP++D R L + +RA N +
Sbjct: 186 ALTQLLEPYL---------SPR----------ANPLTDALCRSGLPRGARALRRACENGE 226
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL--S 553
D AR M LAS + G+ NAG+ HGL+ PI G PHG +
Sbjct: 227 DAAARDDMALASLLGGIALANAGLGAVHGLAGPIGGLFD-------------APHGAICA 273
Query: 554 VVMSAPAVFNFTAASSPERHI---EAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIE 610
++ N A A + ++ +A A L+ + + ++D++ +
Sbjct: 274 TLLPPVLAANIRALRQRGPGNPALAAYREVAGLLTGNLEAAADDLV-EWLEHWVDELGLP 332
Query: 611 NGLKVLGYTSADIPALVTGT 630
L G T D+ A+V
Sbjct: 333 -RLSDYGLTPDDLDAVVEAA 351
|
Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria. Length = 374 |
| >gnl|CDD|185351 PRK15454, PRK15454, ethanol dehydrogenase EutG; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (254), Expect = 3e-23
Identities = 85/278 (30%), Positives = 123/278 (44%), Gaps = 39/278 (14%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GTGSETT V++ K +A+ +L P + ++D T +P VTA +G D
Sbjct: 153 AIPTTAGTGSETTNVTVIIDAVSGRKQVLAHASLMPDVAILDAALTEGVPSHVTAMTGID 212
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E+++AL T P +D A A+ I + +AV
Sbjct: 213 ALTHAIEAYSALNAT-------------------PFTDSLAIGAIAMIGKSLPKAVGYGH 253
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DL AR M LAS MAG+ F +AG+ LCH +++ H IPHGL+
Sbjct: 254 DLAARESMLLASCMAGMAFSSAGLGLCHAMAHQPGA---ALH----------IPHGLANA 300
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
M P V F ER + L R KK+D + V + ++ I L
Sbjct: 301 MLLPTVMEFNRMVCRERFSQIGRAL-----RTKKSDDRDAIN-AVSELIAEVGIGKRLGD 354
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653
+G TSA A L + + PR S E + L+
Sbjct: 355 VGATSAHYGAWAQAAL-EDICLRSNPRTASLEQIVGLY 391
|
Length = 395 |
| >gnl|CDD|173936 cd08177, MAR, Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 4e-22
Identities = 88/342 (25%), Positives = 126/342 (36%), Gaps = 70/342 (20%)
Query: 34 GPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR----V 89
GPG + ++ + A R V+T P L+ + +L FD V
Sbjct: 7 GPGALAALAAELERLGASRALVLTTPSLATKL-AERVASALGDRVAGT--FDGAVMHTPV 63
Query: 90 EPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK 149
E T A R D +A+GGGS ID KA L
Sbjct: 64 EVTE----AAVAAAREAGADGIVAIGGGSTIDLAKAIAL--------------------- 98
Query: 150 PVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLP 209
L P+IAIPTT +GSE T I KT + + P + DP TL+ P
Sbjct: 99 --RTGL-PIIAIPTTL-SGSEMT--PIAGVTENGVKTTGRDPEVLPRTVIYDPELTLTTP 152
Query: 210 ERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQ 269
R+ SG HA+E AL Y NP+ D+ A ++ + +
Sbjct: 153 RRLWLSSGIRAIDHAVE---AL-YAPDA---------------NPIVDLLAEEGIRALAE 193
Query: 270 YFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDH 329
R + DDL+AR + + G G+ G+ L H L + + G TF
Sbjct: 194 ALPRIKADPDDLDARLDALYGAWLCGTCLGSVGMGLSHKLGHVLGG---TFG-------- 242
Query: 330 PIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 371
+PH + + P V F A ++PE A LG +
Sbjct: 243 --LPHAETSCIVLPHVLAFNAPAAPEALARLARALGLGAADA 282
|
Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-chloromercuribenzoate and Hg++, indicating that the cysteine residue is probably necessary for the catalytic activity of maleylacetate reductase. Length = 337 |
| >gnl|CDD|182118 PRK09860, PRK09860, putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 97.3 bits (242), Expect = 9e-22
Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 32/256 (12%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+ TT+GT SE T I E K I ++ + P L + D + +P+ +TA +G D
Sbjct: 135 AINTTAGTASEMTRFCIITDEARHIKMAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMD 194
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++ ++ T P++D A A+ I + AV +
Sbjct: 195 ALTHAIEAYVSIAAT-------------------PITDACALKAVTMIAENLPLAVEDGS 235
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
+ +AR M A +AG+ F NA + H +++ + G F+ +PHG+
Sbjct: 236 NAKAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGG----FYN---------LPHGVCNA 282
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V F + + R + A +G +V+ A+ + + +R ++ I GL+
Sbjct: 283 VLLPHVQVFNSKVAAARLRDCAAAMGVNVTGKNDAEGAEACINAIRELAKKVDIPAGLRD 342
Query: 616 LGYTSADIPALVTGTL 631
L D L T L
Sbjct: 343 LNVKEEDFAVLATNAL 358
|
Length = 383 |
| >gnl|CDD|224890 COG1979, COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 9e-22
Identities = 76/291 (26%), Positives = 122/291 (41%), Gaps = 46/291 (15%)
Query: 78 GVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK---AANLYYCDPE 134
G++ F V P ++ ++A + + D +AVGGGSVID K AA Y DP
Sbjct: 56 GIEVIEFGGVEPNPRLETLMKAVEICKEENIDFLLAVGGGSVIDGTKFIAAAAKYDGDPW 115
Query: 135 AEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALK 194
K + L P+ + T TGSE ++ E K K G + +
Sbjct: 116 DILT--------KKHKIKDAL-PIGTVLTLPATGSEMNAGAVITNEETKEKLGFGSPLVF 166
Query: 195 PTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP 254
P ++DP T +LP+R TA D F H E + P
Sbjct: 167 PKFSVLDPEVTYTLPKRQTANGVVDAFSHVFEQYFTYPV------------------NAK 208
Query: 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVH---LCHGLSY 311
+ D +A L+T+ +Y + + + ++ EAR+++ A+ MA G AGV H + +
Sbjct: 209 LQDRFAEGILRTLIEYGPKLLEDPENYEARANLMWAATMALNGLIGAGVPQDWATHMIGH 268
Query: 312 PISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 362
++ A Y DH GL++V+ PA N+T + ++ AE
Sbjct: 269 ELT--------ALYDIDHAQ---GLAIVL--PAWMNYTLDQKRAKLLQYAE 306
|
Length = 384 |
| >gnl|CDD|132446 TIGR03405, Phn_Fe-ADH, phosphonate metabolism-associated iron-containing alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 6e-21
Identities = 69/298 (23%), Positives = 107/298 (35%), Gaps = 51/298 (17%)
Query: 335 GLSVVMSAPAVFNFTAASSPERHIEAAELLGAD----VSRVKKADAVPTTSGTGSETTG- 389
G SV+ +A + + +LL + A+PTT+GTGSE T
Sbjct: 89 GGSVIDTAKVLAVGLRRGEFDL---LLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPW 145
Query: 390 VSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449
+++D E K + P ++D LSLP T +G D HALES +
Sbjct: 146 ATVWDAEN-SKKYSLHLPFTYPEAAIVDAALMLSLPREHTLSTGLDALSHALESIWNV-- 202
Query: 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAM 509
NPVS A A I + + DL RS M LA+
Sbjct: 203 -----------------NANPVSRGLAIQAAADISRALPEVLAQPGDLALRSDMALAALK 245
Query: 510 AGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASS 569
AG+ F N L H +SY + T +PHG++ + P V +
Sbjct: 246 AGLAFSNTKTALAHSISYEM-----TLRHG--------VPHGIACSFTLPTVLRTALGRN 292
Query: 570 PERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALV 627
P R + G S + +R ++D + ++ G + + +V
Sbjct: 293 PSRDALLQAVFGDTASAPAR----------LRAFLDTLGVKTRFADYGVSRDEARRMV 340
|
This small clade of iron-containing alcohol dehydrogenases of the pfam00465 family is found in genomic contexts indicating a role in the metabolism of phosphonates. In Delftia acidovorans SPH-1, the gene ZP_01580650.1 is adjacent to and running in the same direction as ZP_01580649.1 encoding the enzyme phosphonatase (PhnX, TIGR01422). Upstream are also found genes encoding components of a phosphonate ABC transport complex. In Ralstonia eutropha H16 and Verminephrobacter eiseniae EF01-2 the dehydrogenase is followed by a homolog of the PhnB gene, a putative phosphonate-specific MFS-type transporter. In Azoarcus BH72 the gene is preceded by Phosphoenolpyruvate phosphomutase (aepX) and a putative phosphonopyruvate decarboxylase (aepY), two genes involved in the biosynthesis of phosphonoacetaldehyde (Pald). Ususally these two are accompanied by a specific transaminase, AepZ, which converts Pald to 2-aminoethylphosphonate (2-AEP). 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis. Length = 355 |
| >gnl|CDD|182595 PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 6e-20
Identities = 72/290 (24%), Positives = 118/290 (40%), Gaps = 51/290 (17%)
Query: 376 AVPTTSGTGSETT-GVSIFDYEPLKAKTGIANRALK-------PTLGLIDPLHTLSLPER 427
A+PTT+GT +E T I D E R P + +D S+P
Sbjct: 136 AIPTTAGTAAEVTINYVITDEE--------KRRKFVCVDPHDIPQVAFVDADMMDSMPPG 187
Query: 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYF 487
+ A +G D HA+E + +G ++D+ A++ I
Sbjct: 188 LKAATGVDALTHAIEGYIT-------------------RGAWALTDMLHLKAIEIIAGAL 228
Query: 488 KRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPI 547
+ AV D EA M L +AG+GF N G+ L HG+++P+ A Y+
Sbjct: 229 RGAVAG--DKEAGEGMALGQYIAGMGFSNVGLGLVHGMAHPLG--------AFYN----- 273
Query: 548 IPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQM 607
PHG++ + P V + A + E++ + A +G V + +A + V+ +
Sbjct: 274 TPHGVANAILLPHVMEYNADFTGEKYRDIARAMGVKVEGMSLEEARNAAVEAVKALNRDV 333
Query: 608 KIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657
I L+ +G DIPAL T PRE + ED+ L++ +
Sbjct: 334 GIPPHLRDVGVKEEDIPALAQAAF-DDVCTGGNPREATLEDIVELYKKAW 382
|
Length = 382 |
| >gnl|CDD|173946 cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 1e-16
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 40/203 (19%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
V T + TGSE G ++ E K K G + L+P ++DP T +LP+ TA D
Sbjct: 133 TVLTLAATGSEMNGGAVITNEETKEKLGFGSPLLRPKFSILDPELTYTLPKYQTANGIVD 192
Query: 436 VFCHALES-FTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
+F H +E FT Y + D A L+T+ + +A+ N
Sbjct: 193 IFSHVMEQYFT-------------------YPVDADLQDRLAEGLLKTVIENGPKALKNP 233
Query: 495 DDLEARSHMHLASAMA--G-VGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
+D EAR+++ A+ +A G +G G H + + +S D I HG
Sbjct: 234 EDYEARANIMWAATLALNGLIGVGRPQDWATHMIEHELS---------ALYD----IAHG 280
Query: 552 --LSVVMSAPAVFNFTAASSPER 572
L++V PA + P +
Sbjct: 281 AGLAIVT--PAWMRYVYKEKPAK 301
|
The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases. Length = 382 |
| >gnl|CDD|173927 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH) | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 1e-16
Identities = 59/255 (23%), Positives = 93/255 (36%), Gaps = 59/255 (23%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
VPTT+ TGSE + ++ + KTG P + +D T LP R A G D
Sbjct: 109 IVPTTAATGSEVSPKAVI-TDKEGGKTG-FFYPDNPDVVFVDTDITKGLPPRQVASGGVD 166
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HALE+++ + P++D A AL+TI + +A
Sbjct: 167 ALSHALEAYST-------------------KKSWPIADALAEKALETIEEDLPKA-IEPG 206
Query: 496 DLEARSHMHLASAMAGVGFGNA---GVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 552
D +A + A+ +AG G A G+ H + + ++ IPHG
Sbjct: 207 DYDALEKVVWAATLAGNGLFAAKSGGLGAAHAIGHALT----ALEG---------IPHGE 253
Query: 553 SVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENG 612
+V + PAV +PE + V K +++ +
Sbjct: 254 AVAVGLPAVLKVANDMNPEIE--------HAIEAVFK-------------FLEDLGAPTD 292
Query: 613 LKVLGYTSADIPALV 627
L LG + DI L
Sbjct: 293 LADLGVSKEDIDKLA 307
|
Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H. Length = 332 |
| >gnl|CDD|211989 TIGR04266, NDMA_methanol, NDMA-dependent methanol dehydrogenase | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 1e-15
Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 40/225 (17%)
Query: 376 AVPTTSGTGSETTGVSIF----DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAY 431
AV TT+GTGSET+ + D + G + A TL + DPL + P+ TAY
Sbjct: 143 AVSTTAGTGSETSWAYVITDTSDMDQPHKWVGF-DEATIVTLAIDDPLLYYTCPQHFTAY 201
Query: 432 SGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAV 491
GFDV H E PY R P L A ++++ + ++ + AV
Sbjct: 202 CGFDVLAHGSE-----PYVSRLDFA--PSLGNAL------------YSVELVAKHLREAV 242
Query: 492 YNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
+ +L+AR M A +AG F + G+ + H +S+ +S + D H HG
Sbjct: 243 FEPRNLKAREGMMNAQYIAGQAFNSGGLGIVHSISHAVS---------AFFDSH----HG 289
Query: 552 LSVVMSAPAVFNFTAASSPERHIEAAELLGADVSR---VKKADAG 593
L+ ++ P V+ + S ER+ + A +G D V+ ADA
Sbjct: 290 LNNAIALPRVWEYNLPSRYERYAQLATAMGVDTRNMTTVQAADAA 334
|
Members of this family belong to the iron-dependent alcohol dehydrogenase family (see pfam00465). The NADP(H) cofactor is bound too tightly for exchange (although non-convalently), so enzymatic activity depends on a second substrate or electron carrier. The radical SAM-modified natural product mycofactocin is proposed to fill this role. Length = 420 |
| >gnl|CDD|173943 cd08184, Fe-ADH3, Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 9e-15
Identities = 70/240 (29%), Positives = 101/240 (42%), Gaps = 42/240 (17%)
Query: 90 EPTGDSFLEATKFVRSV---QCDAFIAVGGGSVIDTCKAANLYYCDP-EAEFLDYVNAPI 145
EP D T V+S A + +GGGS +D KA + +P AE DY +
Sbjct: 61 EPKTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAE--DYQGWDL 118
Query: 146 GKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI-DPLH 204
V P I IPT SGTG+E + ++ K G+ N +I DP
Sbjct: 119 -----VKNPAVYKIGIPTLSGTGAEASRTAVLMGPERK--LGM-NSDFTMFDQIILDPEL 170
Query: 205 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFAL 264
T +P Y+G D + H +ES L Y+ N VSD +A AL
Sbjct: 171 TAGVPRDQYFYTGMDCYIHCIES-----------------LTGTYR--NEVSDAYAEKAL 211
Query: 265 QTIRQYFKRAVYNQDDL---EARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFH 321
+ RQ V+ DD+ E + +AS + G+ N+ V +CH SY +S ++ H
Sbjct: 212 ELCRQ-----VFLSDDMMSEENDDKLMMASYLGGMSIANSQVGVCHAASYGLSLHLGYHH 266
|
Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria. Length = 347 |
| >gnl|CDD|224890 COG1979, COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 3e-14
Identities = 69/297 (23%), Positives = 122/297 (41%), Gaps = 52/297 (17%)
Query: 375 DAVP-----TTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVT 429
DA+P T TGSE ++ E K K G + + P ++DP T +LP+R T
Sbjct: 126 DALPIGTVLTLPATGSEMNAGAVITNEETKEKLGFGSPLVFPKFSVLDPEVTYTLPKRQT 185
Query: 430 AYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKR 489
A D F H E + P + D +A L+T+ +Y +
Sbjct: 186 ANGVVDAFSHVFEQYFTYPV------------------NAKLQDRFAEGILRTLIEYGPK 227
Query: 490 AVYNQDDLEARSHMHLASAMAGVGFGNAGVH---LCHGLSYPISGNVKTFHPAGYSDDHP 546
+ + ++ EAR+++ A+ MA G AGV H + + ++ A Y DH
Sbjct: 228 LLEDPENYEARANLMWAATMALNGLIGAGVPQDWATHMIGHELT--------ALYDIDHA 279
Query: 547 IIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL-----GADVSRVKKADAGKLLADTVR 601
GL++V+ PA N+T + ++ AE + G+D + +A R
Sbjct: 280 Q---GLAIVL--PAWMNYTLDQKRAKLLQYAERVWGITEGSDDEIIDEA------IAKTR 328
Query: 602 GYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAP-REQSEEDLANLFENSM 657
+ + + + L G IP L+ L +H + L + + +D+ + E ++
Sbjct: 329 EFFESLGVPTRLSDYGIDEEKIPLLLE-KLEKHGMGTLGEFGDLNLQDVREILEAAL 384
|
Length = 384 |
| >gnl|CDD|173936 cd08177, MAR, Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 7e-13
Identities = 75/286 (26%), Positives = 106/286 (37%), Gaps = 61/286 (21%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT +GSE T I KT + + P + DP TL+ P R+ SG
Sbjct: 106 AIPTTL-SGSEMT--PIAGVTENGVKTTGRDPEVLPRTVIYDPELTLTTPRRLWLSSGIR 162
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E AL Y NP+ D+ A ++ + + R + D
Sbjct: 163 AIDHAVE---AL-YAPDA---------------NPIVDLLAEEGIRALAEALPRIKADPD 203
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DL+AR + + G G+ G+ L H L + + G TF +PH +
Sbjct: 204 DLDARLDALYGAWLCGTCLGSVGMGLSHKLGHVLGG---TFG----------LPHAETSC 250
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V F A ++PE A LG ADA LAD R + L
Sbjct: 251 IVLPHVLAFNAPAAPEALARLARALGLGA-----ADAADALADLAR----SLGAPTSLAD 301
Query: 616 LGYTSADIPALVTGTLPQHRITKLA-------PREQSEEDLANLFE 654
LG DI R +LA PR + + L E
Sbjct: 302 LGVPRDDID----------RAAELALADPYANPRPLERDAVRALLE 337
|
Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-chloromercuribenzoate and Hg++, indicating that the cysteine residue is probably necessary for the catalytic activity of maleylacetate reductase. Length = 337 |
| >gnl|CDD|185092 PRK15138, PRK15138, aldehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 31/232 (13%)
Query: 77 HGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK--AANLYY---C 131
G+ F + PT ++ ++A K VR + +AVGGGSV+D K AA Y
Sbjct: 55 KGMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAAAANYPENI 114
Query: 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANR 191
DP L+ I P+ L T TGSE+ ++ + K +
Sbjct: 115 DP-WHILETGGKEIKSAIPMGSVL-------TLPATGSESNAGAVISRKTTGDKQAFHSP 166
Query: 192 ALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQG 251
++P ++DP++T +LP R A D F H +E + P +
Sbjct: 167 HVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTYPVDAK--------------- 211
Query: 252 QNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGV 303
+ D +A L T+ + +A+ ++ + R+++ A+ A G AGV
Sbjct: 212 ---IQDRFAEGILLTLIEEGPKALKEPENYDVRANVMWAATQALNGLIGAGV 260
|
Length = 387 |
| >gnl|CDD|173943 cd08184, Fe-ADH3, Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 31/166 (18%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI-DPLHTLSLPERVTAYSGF 434
+PT SGTG+E + ++ K G+ N +I DP T +P Y+G
Sbjct: 128 GIPTLSGTGAEASRTAVLMGPERK--LGM-NSDFTMFDQIILDPELTAGVPRDQYFYTGM 184
Query: 435 DVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
D + H +ES L Y+ N VSD +A AL+ RQ V+
Sbjct: 185 DCYIHCIES-----------------LTGTYR--NEVSDAYAEKALELCRQ-----VFLS 220
Query: 495 DDL---EARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFH 537
DD+ E + +AS + G+ N+ V +CH SY +S ++ H
Sbjct: 221 DDMMSEENDDKLMMASYLGGMSIANSQVGVCHAASYGLSLHLGYHH 266
|
Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria. Length = 347 |
| >gnl|CDD|185092 PRK15138, PRK15138, aldehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 49/304 (16%)
Query: 344 AVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTG 403
A N+ P HI E G ++ +V T TGSE+ ++ + K
Sbjct: 106 AAANYPENIDP-WHI--LETGGKEIKSAIPMGSVLTLPATGSESNAGAVISRKTTGDKQA 162
Query: 404 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRP 463
+ ++P ++DP++T +LP R A D F H +E + P +
Sbjct: 163 FHSPHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTYPVDAK----------- 211
Query: 464 AYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVH--- 520
+ D +A L T+ + +A+ ++ + R+++ A+ A G AGV
Sbjct: 212 -------IQDRFAEGILLTLIEEGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDW 264
Query: 521 LCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580
H L + ++ A + DH L++V+ PA++N + + ++ AE +
Sbjct: 265 ATHMLGHELT--------AMHGLDH---AQTLAIVL--PALWNEKRDTKRAKLLQYAERV 311
Query: 581 -----GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHR 635
G+D R+ A A R + +QM + L G + IPAL+ L +H
Sbjct: 312 WNITEGSDDERIDAAIAA------TRNFFEQMGVPTRLSDYGLDGSSIPALL-KKLEEHG 364
Query: 636 ITKL 639
+T+L
Sbjct: 365 MTQL 368
|
Length = 387 |
| >gnl|CDD|222318 pfam13685, Fe-ADH_2, Iron-containing alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 32 RIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEP 91
IGPG +G + + ++V V+ D + K A + +SL GV+ + +
Sbjct: 1 VIGPGALSRLGEILAKLGGKKVLVVADENTYKAA-GEKVEESLKEAGVEVAIVLPD-GDA 58
Query: 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAA 126
++ +E DA +AVGGG++ D K A
Sbjct: 59 DEET-VEKLVEALERDADAVVAVGGGTINDIAKYA 92
|
Length = 247 |
| >gnl|CDD|173929 cd08170, GlyDH, Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-06
Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 29/145 (20%)
Query: 34 GPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLD-SLTRHGVKFELFDKVRVEPT 92
GPG E+G + + +R ++ D + L V A ++ SL G+ F+ E T
Sbjct: 7 GPGALDELGEYLARL-GKRALIIADEFVLDL--VGAKIEESLAAAGIDAR-FEVFGGECT 62
Query: 93 GDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVT 152
+ R D I +GGG +DT KA A++L
Sbjct: 63 RAEIERLAEIARDNGADVVIGIGGGKTLDTAKAV--------ADYLG------------- 101
Query: 153 VPLKPLIAIPTTSGTGSETTGVSIF 177
P++ +PT + T + T+ +S+
Sbjct: 102 ---APVVIVPTIASTDAPTSALSVI 123
|
Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Length = 351 |
| >gnl|CDD|173932 cd08173, Gro1PDH, Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 22/143 (15%)
Query: 33 IGPGVTREVGMDMVN--MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE 90
+G GV ++ +++ + RV V+T P +A K L G + + +
Sbjct: 7 VGHGVLEKIP-NVLRDLLLGGRVLVVTGPTTKSIA-GKKVEALLEDEGEVDVV---IVED 61
Query: 91 PTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFL--------DYVN 142
T + + R + D I VGGG VID K + F+ D +
Sbjct: 62 ATYEEVEKVESSARDIGADFVIGVGGGRVIDVAK---VAAYKLGIPFISVPTAASHDGIA 118
Query: 143 API----GKGKPVTVPLKPLIAI 161
+P G GKP+++ KP +A+
Sbjct: 119 SPRASIKGNGKPISIKAKPPLAV 141
|
Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosphate backbone [sn- glycerol-1-phosphate (G-1-P)] that is the mirror image structure of the bacterial or eukaryal counterpart [sn-glycerol- 3-phosphate (G-3-P)]. The absolute stereochemistry of the glycerol moiety in all archaeal polar lipids is opposite to that of glycerol ester lipids in bacteria and eukarya. This protein family is only found in Archaea. Length = 339 |
| >gnl|CDD|173931 cd08172, GlyDH-like1, Glycerol dehydrogenases-like | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 32/149 (21%), Positives = 49/149 (32%), Gaps = 37/149 (24%)
Query: 32 RIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEP 91
G G E+G + +R ++T P A L E F +
Sbjct: 6 ISGEGALDELGELLKRF-GKRPLIVTGPR-----SWAAAKPYLPESLAAGEAFV---LRY 56
Query: 92 TGDSFLEA----TKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGK 147
G+ E + D I +GGG V+DT KA A+ L
Sbjct: 57 DGECSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAV--------ADRLGV------- 101
Query: 148 GKPVTVPLKPLIAIPTTSGTGSETTGVSI 176
P+I +PT + T + T +S+
Sbjct: 102 ---------PVITVPTLAATCAAWTPLSV 121
|
Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Length = 347 |
| >gnl|CDD|223448 COG0371, GldA, Glycerol dehydrogenase and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 38/171 (22%), Positives = 59/171 (34%), Gaps = 31/171 (18%)
Query: 33 IGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHG-VKFELFDKVRVEP 91
G G ++ ++ + R V+T + +A + SL G V +F E
Sbjct: 13 QGKGAINKLLEVLLKLGLSRALVVTGENTYAIA-GEKVEKSLKDEGLVVHVVFVG---EA 68
Query: 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPV 151
+ + D I VGGG IDT KAA A L
Sbjct: 69 SEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAA--------AYRLG------------ 108
Query: 152 TVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDP 202
P I++PT + T + T+ V+ Y K +A P ++D
Sbjct: 109 ----LPFISVPTIASTDAITSPVASVIYNGKGDKYSFLAKA--PDAVIVDT 153
|
Length = 360 |
| >gnl|CDD|173933 cd08174, G1PDH-like, Glycerol-1-phosphate dehydrogenase-like | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 15/101 (14%)
Query: 31 IRIGPGVTREVG--MDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHG-VKFELFDK 86
+ IG G +G + N RV V++ P + ++A SL + E +
Sbjct: 4 LDIGEGAIARLGELLSDRNPNFGRVAVVSGPGVGEQVAE------SLKTSFSAEVEAVE- 56
Query: 87 VRVEPTGDSFLEATKFVRSV-QCDAFIAVGGGSVIDTCKAA 126
E + E RS+ DA + +GGG VID K A
Sbjct: 57 ---EVSNSDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYA 94
|
Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific. Length = 331 |
| >gnl|CDD|173930 cd08171, GlyDH-like2, Glycerol dehydrogenase-like | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 26/80 (32%)
Query: 97 LEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLK 156
L+ V+ + D AVGGG IDT K A+ L K
Sbjct: 70 LKKNPAVQ--EADMIFAVGGGKAIDTVKVL--------ADKLG----------------K 103
Query: 157 PLIAIPTTSGTGSETTGVSI 176
P+ PT + + T VS+
Sbjct: 104 PVFTFPTIASNCAAVTAVSV 123
|
Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Length = 345 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 660 | |||
| KOG3857|consensus | 465 | 100.0 | ||
| COG1454 | 377 | EutG Alcohol dehydrogenase, class IV [Energy produ | 100.0 | |
| PRK09860 | 383 | putative alcohol dehydrogenase; Provisional | 100.0 | |
| cd08190 | 414 | HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv | 100.0 | |
| PRK15454 | 395 | ethanol dehydrogenase EutG; Provisional | 100.0 | |
| TIGR02638 | 379 | lactal_redase lactaldehyde reductase. This clade o | 100.0 | |
| PRK10624 | 382 | L-1,2-propanediol oxidoreductase; Provisional | 100.0 | |
| cd08193 | 376 | HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze | 100.0 | |
| cd08191 | 386 | HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz | 100.0 | |
| cd08186 | 383 | Fe-ADH8 Iron-containing alcohol dehydrogenase. Typ | 100.0 | |
| cd08176 | 377 | LPO Lactadehyde:propanediol oxidoreductase (LPO) c | 100.0 | |
| cd08188 | 377 | Fe-ADH4 Iron-containing alcohol dehydrogenases-lik | 100.0 | |
| cd08189 | 374 | Fe-ADH5 Iron-containing alcohol dehydrogenases-lik | 100.0 | |
| PRK15138 | 387 | aldehyde reductase; Provisional | 100.0 | |
| cd08194 | 375 | Fe-ADH6 Iron-containing alcohol dehydrogenases-lik | 100.0 | |
| cd08185 | 380 | Fe-ADH1 Iron-containing alcohol dehydrogenases-lik | 100.0 | |
| cd08192 | 370 | Fe-ADH7 Iron-containing alcohol dehydrogenases-lik | 100.0 | |
| cd08183 | 374 | Fe-ADH2 Iron-containing alcohol dehydrogenases-lik | 100.0 | |
| cd08187 | 382 | BDH Butanol dehydrogenase catalyzes the conversion | 100.0 | |
| cd08178 | 398 | AAD_C C-terminal alcohol dehydrogenase domain of t | 100.0 | |
| cd08182 | 367 | HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) c | 100.0 | |
| PF00465 | 366 | Fe-ADH: Iron-containing alcohol dehydrogenase ; In | 100.0 | |
| cd08179 | 375 | NADPH_BDH NADPH-dependent butanol dehydrogenase in | 100.0 | |
| cd08551 | 370 | Fe-ADH iron-containing alcohol dehydrogenases (Fe- | 100.0 | |
| cd08181 | 357 | PPD-like 1,3-propanediol dehydrogenase-like (PPD). | 100.0 | |
| TIGR03405 | 355 | Phn_Fe-ADH phosphonate metabolism-associated iron- | 100.0 | |
| COG1979 | 384 | Uncharacterized oxidoreductases, Fe-dependent alco | 100.0 | |
| cd08177 | 337 | MAR Maleylacetate reductase is involved in many ar | 100.0 | |
| PRK13805 | 862 | bifunctional acetaldehyde-CoA/alcohol dehydrogenas | 100.0 | |
| cd08180 | 332 | PDD 1,3-propanediol dehydrogenase (PPD) catalyzes | 100.0 | |
| cd07766 | 332 | DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) | 100.0 | |
| cd08184 | 347 | Fe-ADH3 Iron-containing alcohol dehydrogenases-lik | 100.0 | |
| cd08170 | 351 | GlyDH Glycerol dehydrogenases (GlyDH) catalyzes ox | 100.0 | |
| PRK09423 | 366 | gldA glycerol dehydrogenase; Provisional | 100.0 | |
| cd08550 | 349 | GlyDH-like Glycerol_dehydrogenase-like. Families o | 100.0 | |
| cd08172 | 347 | GlyDH-like1 Glycerol dehydrogenases-like. Glycerol | 100.0 | |
| cd08171 | 345 | GlyDH-like2 Glycerol dehydrogenase-like. Glycerol | 100.0 | |
| cd08175 | 348 | G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) c | 100.0 | |
| PRK10586 | 362 | putative oxidoreductase; Provisional | 100.0 | |
| cd08173 | 339 | Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro | 100.0 | |
| cd08549 | 332 | G1PDH_related Glycerol-1-phosphate_dehydrogenase a | 100.0 | |
| COG0371 | 360 | GldA Glycerol dehydrogenase and related enzymes [E | 100.0 | |
| cd08174 | 331 | G1PDH-like Glycerol-1-phosphate dehydrogenase-like | 100.0 | |
| PRK00843 | 350 | egsA NAD(P)-dependent glycerol-1-phosphate dehydro | 100.0 | |
| PRK00002 | 358 | aroB 3-dehydroquinate synthase; Reviewed | 100.0 | |
| cd08195 | 345 | DHQS Dehydroquinate synthase (DHQS) catalyzes the | 100.0 | |
| TIGR01357 | 344 | aroB 3-dehydroquinate synthase. This model represe | 100.0 | |
| cd08197 | 355 | DOIS 2-deoxy-scyllo-inosose synthase (DOIS) cataly | 100.0 | |
| PF13685 | 250 | Fe-ADH_2: Iron-containing alcohol dehydrogenase; P | 100.0 | |
| cd08169 | 344 | DHQ-like Dehydroquinate synthase-like which includ | 100.0 | |
| PRK06203 | 389 | aroB 3-dehydroquinate synthase; Reviewed | 99.98 | |
| PLN02834 | 433 | 3-dehydroquinate synthase | 99.97 | |
| cd08198 | 369 | DHQS-like2 Dehydroquinate synthase (DHQS)-like. DH | 99.97 | |
| cd08199 | 354 | EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi- | 99.97 | |
| cd08196 | 346 | DHQS-like1 Dehydroquinate synthase (DHQS)-like. DH | 99.96 | |
| COG0337 | 360 | AroB 3-dehydroquinate synthetase [Amino acid trans | 99.96 | |
| PRK14021 | 542 | bifunctional shikimate kinase/3-dehydroquinate syn | 99.96 | |
| PRK13951 | 488 | bifunctional shikimate kinase/3-dehydroquinate syn | 99.94 | |
| cd08174 | 331 | G1PDH-like Glycerol-1-phosphate dehydrogenase-like | 99.93 | |
| PF01761 | 260 | DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF | 99.86 | |
| cd08549 | 332 | G1PDH_related Glycerol-1-phosphate_dehydrogenase a | 99.86 | |
| PRK00843 | 350 | egsA NAD(P)-dependent glycerol-1-phosphate dehydro | 99.83 | |
| cd08184 | 347 | Fe-ADH3 Iron-containing alcohol dehydrogenases-lik | 99.72 | |
| cd08170 | 351 | GlyDH Glycerol dehydrogenases (GlyDH) catalyzes ox | 99.69 | |
| cd08172 | 347 | GlyDH-like1 Glycerol dehydrogenases-like. Glycerol | 99.69 | |
| COG1454 | 377 | EutG Alcohol dehydrogenase, class IV [Energy produ | 99.68 | |
| PRK15138 | 387 | aldehyde reductase; Provisional | 99.66 | |
| cd08550 | 349 | GlyDH-like Glycerol_dehydrogenase-like. Families o | 99.66 | |
| KOG3857|consensus | 465 | 99.66 | ||
| cd08189 | 374 | Fe-ADH5 Iron-containing alcohol dehydrogenases-lik | 99.62 | |
| cd08176 | 377 | LPO Lactadehyde:propanediol oxidoreductase (LPO) c | 99.61 | |
| cd08171 | 345 | GlyDH-like2 Glycerol dehydrogenase-like. Glycerol | 99.61 | |
| PRK10586 | 362 | putative oxidoreductase; Provisional | 99.6 | |
| PF00465 | 366 | Fe-ADH: Iron-containing alcohol dehydrogenase ; In | 99.57 | |
| cd08551 | 370 | Fe-ADH iron-containing alcohol dehydrogenases (Fe- | 99.56 | |
| cd08179 | 375 | NADPH_BDH NADPH-dependent butanol dehydrogenase in | 99.54 | |
| cd08191 | 386 | HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz | 99.53 | |
| cd08190 | 414 | HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv | 99.53 | |
| PRK15454 | 395 | ethanol dehydrogenase EutG; Provisional | 99.51 | |
| cd08177 | 337 | MAR Maleylacetate reductase is involved in many ar | 99.5 | |
| cd08187 | 382 | BDH Butanol dehydrogenase catalyzes the conversion | 99.5 | |
| PRK09860 | 383 | putative alcohol dehydrogenase; Provisional | 99.49 | |
| cd08180 | 332 | PDD 1,3-propanediol dehydrogenase (PPD) catalyzes | 99.49 | |
| cd08193 | 376 | HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze | 99.48 | |
| cd08186 | 383 | Fe-ADH8 Iron-containing alcohol dehydrogenase. Typ | 99.48 | |
| TIGR02638 | 379 | lactal_redase lactaldehyde reductase. This clade o | 99.47 | |
| TIGR01357 | 344 | aroB 3-dehydroquinate synthase. This model represe | 99.47 | |
| cd08188 | 377 | Fe-ADH4 Iron-containing alcohol dehydrogenases-lik | 99.47 | |
| TIGR03405 | 355 | Phn_Fe-ADH phosphonate metabolism-associated iron- | 99.45 | |
| PRK06203 | 389 | aroB 3-dehydroquinate synthase; Reviewed | 99.45 | |
| cd08194 | 375 | Fe-ADH6 Iron-containing alcohol dehydrogenases-lik | 99.45 | |
| cd08182 | 367 | HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) c | 99.43 | |
| cd08181 | 357 | PPD-like 1,3-propanediol dehydrogenase-like (PPD). | 99.42 | |
| cd08178 | 398 | AAD_C C-terminal alcohol dehydrogenase domain of t | 99.41 | |
| cd08183 | 374 | Fe-ADH2 Iron-containing alcohol dehydrogenases-lik | 99.39 | |
| cd08185 | 380 | Fe-ADH1 Iron-containing alcohol dehydrogenases-lik | 99.39 | |
| cd08192 | 370 | Fe-ADH7 Iron-containing alcohol dehydrogenases-lik | 99.38 | |
| cd07766 | 332 | DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) | 99.37 | |
| PRK10624 | 382 | L-1,2-propanediol oxidoreductase; Provisional | 99.37 | |
| PRK09423 | 366 | gldA glycerol dehydrogenase; Provisional | 99.37 | |
| COG1979 | 384 | Uncharacterized oxidoreductases, Fe-dependent alco | 99.33 | |
| cd08175 | 348 | G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) c | 99.29 | |
| PRK00002 | 358 | aroB 3-dehydroquinate synthase; Reviewed | 99.27 | |
| PRK13805 | 862 | bifunctional acetaldehyde-CoA/alcohol dehydrogenas | 99.24 | |
| COG0371 | 360 | GldA Glycerol dehydrogenase and related enzymes [E | 99.22 | |
| PLN02834 | 433 | 3-dehydroquinate synthase | 99.2 | |
| cd08195 | 345 | DHQS Dehydroquinate synthase (DHQS) catalyzes the | 99.16 | |
| PF13685 | 250 | Fe-ADH_2: Iron-containing alcohol dehydrogenase; P | 99.12 | |
| cd08197 | 355 | DOIS 2-deoxy-scyllo-inosose synthase (DOIS) cataly | 99.07 | |
| cd08169 | 344 | DHQ-like Dehydroquinate synthase-like which includ | 98.99 | |
| cd08198 | 369 | DHQS-like2 Dehydroquinate synthase (DHQS)-like. DH | 98.92 | |
| cd08199 | 354 | EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi- | 98.87 | |
| cd08173 | 339 | Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro | 98.78 | |
| PRK13951 | 488 | bifunctional shikimate kinase/3-dehydroquinate syn | 98.75 | |
| PRK14021 | 542 | bifunctional shikimate kinase/3-dehydroquinate syn | 98.57 | |
| cd08196 | 346 | DHQS-like1 Dehydroquinate synthase (DHQS)-like. DH | 98.42 | |
| COG0337 | 360 | AroB 3-dehydroquinate synthetase [Amino acid trans | 98.25 | |
| PF01761 | 260 | DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF | 97.72 | |
| PF00731 | 150 | AIRC: AIR carboxylase; InterPro: IPR000031 Phospho | 96.84 | |
| TIGR01162 | 156 | purE phosphoribosylaminoimidazole carboxylase, Pur | 96.38 | |
| COG0041 | 162 | PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) m | 95.17 | |
| PLN02958 | 481 | diacylglycerol kinase/D-erythro-sphingosine kinase | 92.6 | |
| PRK13054 | 300 | lipid kinase; Reviewed | 92.41 | |
| PRK00286 | 438 | xseA exodeoxyribonuclease VII large subunit; Revie | 92.39 | |
| PRK13055 | 334 | putative lipid kinase; Reviewed | 92.25 | |
| TIGR00237 | 432 | xseA exodeoxyribonuclease VII, large subunit. This | 91.93 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 91.76 | |
| PRK13337 | 304 | putative lipid kinase; Reviewed | 91.54 | |
| PF00781 | 130 | DAGK_cat: Diacylglycerol kinase catalytic domain; | 91.38 | |
| PF02601 | 319 | Exonuc_VII_L: Exonuclease VII, large subunit; Inte | 91.06 | |
| TIGR00147 | 293 | lipid kinase, YegS/Rv2252/BmrU family. The E. coli | 90.95 | |
| COG1570 | 440 | XseA Exonuclease VII, large subunit [DNA replicati | 90.55 | |
| cd06366 | 350 | PBP1_GABAb_receptor Ligand-binding domain of GABAb | 90.26 | |
| cd06350 | 348 | PBP1_GPCR_family_C_like Ligand-binding domain of m | 90.24 | |
| PRK11914 | 306 | diacylglycerol kinase; Reviewed | 90.13 | |
| PF01513 | 285 | NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me | 90.04 | |
| TIGR03702 | 293 | lip_kinase_YegS lipid kinase YegS. Members of this | 89.51 | |
| PRK13059 | 295 | putative lipid kinase; Reviewed | 89.45 | |
| cd06346 | 312 | PBP1_ABC_ligand_binding_like_11 Type I periplasmic | 87.23 | |
| PRK01231 | 295 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 86.97 | |
| COG3199 | 355 | Predicted inorganic polyphosphate/ATP-NAD kinase [ | 86.78 | |
| PRK02155 | 291 | ppnK NAD(+)/NADH kinase family protein; Provisiona | 86.29 | |
| PRK13057 | 287 | putative lipid kinase; Reviewed | 84.76 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 84.45 | |
| PRK02645 | 305 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 83.35 | |
| PRK14077 | 287 | pnk inorganic polyphosphate/ATP-NAD kinase; Provis | 83.28 | |
| cd06374 | 472 | PBP1_mGluR_groupI Ligand binding domain of the gro | 83.15 | |
| cd06362 | 452 | PBP1_mGluR Ligand binding domain of the metabotrop | 83.13 | |
| COG0683 | 366 | LivK ABC-type branched-chain amino acid transport | 82.81 | |
| cd06268 | 298 | PBP1_ABC_transporter_LIVBP_like Periplasmic bindin | 81.69 | |
| PF13458 | 343 | Peripla_BP_6: Periplasmic binding protein; PDB: 4E | 81.35 | |
| cd06334 | 351 | PBP1_ABC_ligand_binding_like_1 Type I periplasmic | 81.27 | |
| PRK03378 | 292 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 81.07 | |
| cd06363 | 410 | PBP1_Taste_receptor Ligand-binding domain of the T | 81.07 | |
| TIGR02990 | 239 | ectoine_eutA ectoine utilization protein EutA. Mem | 80.99 | |
| cd06267 | 264 | PBP1_LacI_sugar_binding_like Ligand binding domain | 80.87 | |
| cd06349 | 340 | PBP1_ABC_ligand_binding_like_14 Type I periplasmic | 80.76 | |
| cd06333 | 312 | PBP1_ABC-type_HAAT_like Type I periplasmic binding | 80.6 | |
| PF13433 | 363 | Peripla_BP_5: Periplasmic binding protein domain; | 80.39 | |
| cd06364 | 510 | PBP1_CaSR Ligand-binding domain of the CaSR calciu | 80.01 |
| >KOG3857|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-77 Score=593.81 Aligned_cols=429 Identities=53% Similarity=0.831 Sum_probs=398.6
Q ss_pred CCCCCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHH
Q psy2427 16 PTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDS 95 (660)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~ 95 (660)
+++|+++.|+|.++.++||.|++.+++..++++|+|++++|||+++.+.+.++.++++|+++||.+.+|+++.++|+..+
T Consensus 36 q~k~~~~af~m~~s~~rfG~gv~~Evg~dikn~gaKk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s 115 (465)
T KOG3857|consen 36 QIKMMSVAFFMIPSTSRFGKGVLAEVGDDIKNLGAKKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGS 115 (465)
T ss_pred ccccceeeEEeccchhhhcchhHHHHHHHHHhcCccceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCce
Q psy2427 96 FLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVS 175 (660)
Q Consensus 96 v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~a 175 (660)
+.++++.+++.++|.+|+|||||++|+||+++++..++++++.||++.|+|++++...+.+|+|+||||+|||||.|+++
T Consensus 116 ~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~Asn~~~eflDyvg~pigk~~~~s~p~lPLiAipTTaGTgSEtT~~A 195 (465)
T KOG3857|consen 116 VTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLASNGEGEFLDYVGPPIGKVKQSSKPLLPLIAIPTTAGTGSETTRFA 195 (465)
T ss_pred HHHHHHHHHhcccceEEEEcCcchhhhHHHHHHhhcCCCccchhccCCcccccccccccccceEecccCCCccccceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHH
Q psy2427 176 IFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPV 255 (660)
Q Consensus 176 vi~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (660)
+++.++.+.|.++.+..+.|.++++||.-+.++|+++++.+|+|+|+|++|+|.+.+|.+|+++
T Consensus 196 I~d~e~~k~K~gI~~k~ikP~lav~DPl~~~~~P~~v~a~tGfDvlcHalEsyts~py~~rsp~---------------- 259 (465)
T KOG3857|consen 196 IIDYEELKIKMGIIDKNIKPTLAVNDPLTMLGLPPRVTAATGFDVLCHALESYTSTPYDQRSPR---------------- 259 (465)
T ss_pred EecchhhheeeeeecccccceeeecChHHhccCChHHhhhcchHHHHHHHHHHhcCcccccCCC----------------
Confidence 9999988999999999999999999999999999999999999999999999998654444333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
T Consensus 260 -------------------------------------------------------------------------------- 259 (465)
T KOG3857|consen 260 -------------------------------------------------------------------------------- 259 (465)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGL 415 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i 415 (660)
T Consensus 260 -------------------------------------------------------------------------------- 259 (465)
T KOG3857|consen 260 -------------------------------------------------------------------------------- 259 (465)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCC
Q psy2427 416 IDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495 (660)
Q Consensus 416 ~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~ 495 (660)
+.+|..||.|+..||++|.||..|+++|.+++.+++.||+
T Consensus 260 ----------------------------------------psnp~~rp~yqgsNPIsD~wA~~al~li~kyl~rAv~~p~ 299 (465)
T KOG3857|consen 260 ----------------------------------------PSNPGVRPLYQGSNPISDAWALKALELINKYLVRAVKDPK 299 (465)
T ss_pred ----------------------------------------CCCCccccccccCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3445556677788899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHH
Q psy2427 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIE 575 (660)
Q Consensus 496 ~~~ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ 575 (660)
|+|||.+|.+|+++||++|+|+|++++|+|+|+||+..+..-+..|+.+|.=||||+++++++|++.+|+...+|+|.-+
T Consensus 300 d~eARt~M~~As~~aG~gFgNAgvhlcHglsypisg~vk~~kakdy~~dh~liPHGlsv~v~~pavfeft~~~cP~rhl~ 379 (465)
T KOG3857|consen 300 DEEARTDMHYASYLAGMGFGNAGVHLCHGLSYPISGQVKSYKAKDYYHDHNLIPHGLSVAVLLPAVFEFTAAACPDRHLE 379 (465)
T ss_pred cHHHHHHHHHHHHhhccccCcccccceeeccccccCccccccccccccccccCCcchhhhhhhhhhhhhccccCchhHHH
Confidence 99999999999999999999999999999999999965544555566666669999999999999999999999999999
Q ss_pred HHHHhCCCCC-CCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 576 AAELLGADVS-RVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 576 ia~~lg~~~~-~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
.++.||.+.. ....+++.+.++|+|+.|++++|+|..|+++|++.+||+.+++.++.+.+.+.+.|++.|+|++.+|++
T Consensus 380 aaq~LGa~~~h~~~~e~~~~~l~d~lr~~~~~~~i~~gL~~lG~~~sDi~~Lve~a~~~~~~~~~aP~~~t~E~v~alfe 459 (465)
T KOG3857|consen 380 AAQRLGAIARHFGASEDAGEELADRLRGLMRDMGIPNGLKELGVKTSDIEALVEHAMHDACHTTNAPRQQTKEQVSALFE 459 (465)
T ss_pred HHHHhhhHhhcccchhccHHHHHHHHHHHHHhcCCCcchHhhCccccchHHHHhcccccccccccCCccccHHHHHHHHH
Confidence 9999997665 456678889999999999999999999999999999999999999988888877899999999999999
Q ss_pred HHhhcC
Q psy2427 655 NSMSVY 660 (660)
Q Consensus 655 ~a~~~~ 660 (660)
.+|+.|
T Consensus 460 ksme~y 465 (465)
T KOG3857|consen 460 KSMEVY 465 (465)
T ss_pred HhhccC
Confidence 999988
|
|
| >COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-77 Score=626.74 Aligned_cols=373 Identities=38% Similarity=0.600 Sum_probs=343.2
Q ss_pred eccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh
Q psy2427 26 MASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 26 ~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~ 105 (660)
..|++|+||.|++.++.++++.+|.+|+|||||+++.+.++++++.+.|+..++++.+|+++++||+.++|+++++.+++
T Consensus 5 ~~p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~ 84 (377)
T COG1454 5 YLPTEILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVARE 84 (377)
T ss_pred ccCceEEecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 33589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCce
Q psy2427 106 VQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAK 185 (660)
Q Consensus 106 ~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K 185 (660)
+++|+|||+||||+||+||++++.+.++ .+.+||... ++ ...+..|+|+||||+|||||+|+++|++++..+.|
T Consensus 85 ~~~D~iIalGGGS~~D~AK~i~~~~~~~-~~~~~~~~i----~~-~~~~~~plIaIPTTaGTGSEvT~~aVitd~~~~~K 158 (377)
T COG1454 85 FGPDTIIALGGGSVIDAAKAIALLAENP-GSVLDYEGI----GK-VKKPKAPLIAIPTTAGTGSEVTPFAVITDEETGVK 158 (377)
T ss_pred cCCCEEEEeCCccHHHHHHHHHHHhhCC-chhhhhccc----cc-ccCCCCCEEEecCCCcchhhhcCeEEEEeCCCcce
Confidence 9999999999999999999999999987 678888752 11 13344899999999999999999999999988899
Q ss_pred eeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy2427 186 TGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQ 265 (660)
Q Consensus 186 ~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~ 265 (660)
+.+.++.++|+++|+||+|+.++|+.+++.+|+|||.||+|+|+|.
T Consensus 159 ~~i~~~~l~Pd~aI~Dp~lt~~~P~~ltA~TGmDALtHAiEAy~s~---------------------------------- 204 (377)
T COG1454 159 YAIADPELLPDVAILDPELTLGMPPSLTAATGMDALTHAIEAYVSP---------------------------------- 204 (377)
T ss_pred eeccCcccCCCEEEEChHHhcCCChHhhhhhhHHHHHHHHHHHHcC----------------------------------
Confidence 9999999999999999999999999999999999999999998871
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHH
Q psy2427 266 TIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAV 345 (660)
Q Consensus 266 ~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~ 345 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (377)
T COG1454 205 -------------------------------------------------------------------------------- 204 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCC
Q psy2427 346 FNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLP 425 (660)
Q Consensus 346 l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P 425 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (377)
T COG1454 205 -------------------------------------------------------------------------------- 204 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy2427 426 ERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHL 505 (660)
Q Consensus 426 ~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~ 505 (660)
.+||++|.+|.+++++|.++|+++++|++|.+||++|++
T Consensus 205 -----------------------------------------~a~p~tD~~A~~ai~li~~~L~~a~~~g~d~eARe~m~~ 243 (377)
T COG1454 205 -----------------------------------------AANPITDALALEAIKLIFEYLPRAVADGDDLEAREKMHL 243 (377)
T ss_pred -----------------------------------------CCCcchHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345677777777777777888888888899999999999
Q ss_pred HHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCC
Q psy2427 506 ASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVS 585 (660)
Q Consensus 506 as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~ 585 (660)
||++||++|+|+|+|++|+|+|+||+.| |+|||+++|+++|+|++||.+.+++||++|++.||...+
T Consensus 244 aa~lAGmAF~na~lG~~HalaH~lG~~~-------------~~pHG~~nAillP~V~~fN~~~a~~r~a~iA~~lg~~~~ 310 (377)
T COG1454 244 AATLAGMAFANAGLGLVHALAHPLGALF-------------HIPHGLANAILLPYVIRFNAEAAPERYARIARALGLPGE 310 (377)
T ss_pred HHHHHHHHhcchhHHHHHHhhccccccc-------------cCchHHHhhHhhHHHHHHhhhhhHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999975 799999999999999999999999999999999998776
Q ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHh
Q psy2427 586 RVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 586 ~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~ 657 (660)
+. ....+++.+++|.+++|+|++|+|+|+++++++++++.|+. +.+..+|||++|.||+++||+++|
T Consensus 311 ~~----~~~~~i~~i~~L~~~lgip~~L~d~Gv~~~~i~~~a~~A~~-d~~~~~NPr~~t~ed~~~i~~~a~ 377 (377)
T COG1454 311 GD----AADALIDALRELLERLGIPKRLRDLGVKEEDIDKLAEDALA-DPCTATNPRPPTREDIKEIYEAAY 377 (377)
T ss_pred cc----hHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHHHh-CcccCCCCCCCCHHHHHHHHHHhC
Confidence 53 66778999999999999999999999999999999999996 677889999999999999999986
|
|
| >PRK09860 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-72 Score=604.81 Aligned_cols=383 Identities=25% Similarity=0.402 Sum_probs=344.8
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
|..+.|.+ |++|+||.|++++|+++++++|.+|++||||+++.+.+.++++.+.|++.|+.+.+|+++++||+.+.|++
T Consensus 1 ~~~~~~~~-p~~i~~G~g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~ 79 (383)
T PRK09860 1 MAASTFFI-PSVNVIGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAA 79 (383)
T ss_pred CCcccccc-CCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHH
Confidence 34566665 58999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred HHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEe
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFD 178 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~ 178 (660)
+++.++++++|+||||||||+||+||+++..+.++ .++|||... + +...+.+|+|+||||+|||||+|+++|++
T Consensus 80 ~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~-~~~~~~~~~----~-~~~~~~~p~iaIPTTagTGSE~t~~avi~ 153 (383)
T PRK09860 80 GLKLLKENNCDSVISLGGGSPHDCAKGIALVAANG-GDIRDYEGV----D-RSAKPQLPMIAINTTAGTASEMTRFCIIT 153 (383)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCC-CCHHHHhCc----C-ccCCCCCCEEEEeCCCcchhccCceEEEE
Confidence 99999999999999999999999999999988775 678888632 1 22345589999999999999999999999
Q ss_pred eCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy2427 179 YEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258 (660)
Q Consensus 179 ~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (660)
+++.+.|.++.++.++|+++|+||+++.++|++++++|++|||+|++|+|++. .
T Consensus 154 ~~~~~~K~~~~~~~~~P~~ai~Dp~l~~s~P~~~ta~tg~DAL~HaiE~y~s~-------------------~------- 207 (383)
T PRK09860 154 DEARHIKMAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMDALTHAIEAYVSI-------------------A------- 207 (383)
T ss_pred ecCCCceEEEECcCcccCEEEECcHhhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------C-------
Confidence 98888999999999999999999999999999999999999999999999872 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
T Consensus 208 -------------------------------------------------------------------------------- 207 (383)
T PRK09860 208 -------------------------------------------------------------------------------- 207 (383)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccc
Q psy2427 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDP 418 (660)
Q Consensus 339 ai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~ 418 (660)
T Consensus 208 -------------------------------------------------------------------------------- 207 (383)
T PRK09860 208 -------------------------------------------------------------------------------- 207 (383)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy2427 419 LHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLE 498 (660)
Q Consensus 419 ~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ 498 (660)
.||++|.+|+++++++.++++++++|++|++
T Consensus 208 -------------------------------------------------~~p~sd~~a~~ai~~i~~~l~~a~~~~~d~~ 238 (383)
T PRK09860 208 -------------------------------------------------ATPITDACALKAVTMIAENLPLAVEDGSNAK 238 (383)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 2455666666666777777777777888999
Q ss_pred HHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHH
Q psy2427 499 ARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 578 (660)
Q Consensus 499 ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~ 578 (660)
+|++|+|||++||++|+++|+|++|+|+|+||+.| ++|||+++++++|+||+||.+..++||.++++
T Consensus 239 aR~~m~~as~laG~a~~~~g~g~~Hal~h~lg~~~-------------~ipHG~~~ai~lP~vl~~n~~~~~~k~~~~a~ 305 (383)
T PRK09860 239 AREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGFY-------------NLPHGVCNAVLLPHVQVFNSKVAAARLRDCAA 305 (383)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHhhHHhhCc-------------CCCcHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 99999999999999999999999999999999974 79999999999999999999999999999999
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHh
Q psy2427 579 LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 579 ~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~ 657 (660)
.||....+.++++.+.++++++++|++++|+|++|+|+|+++++++.+++.++.+ ....+||+++|++|+++||+++|
T Consensus 306 ~~g~~~~~~~~~~~a~~~i~~i~~l~~~lglP~~L~e~gv~~~~~~~ia~~a~~~-~~~~~np~~~t~~~i~~il~~~~ 383 (383)
T PRK09860 306 AMGVNVTGKNDAEGAEACINAIRELAKKVDIPAGLRDLNVKEEDFAVLATNALKD-ACGFTNPIQATHEEIVAIYRAAM 383 (383)
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhC-cccCCCCCCCCHHHHHHHHHHhC
Confidence 9998766667777888899999999999999999999999999999999999854 34457999999999999999875
|
|
| >cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-71 Score=605.37 Aligned_cols=412 Identities=66% Similarity=1.094 Sum_probs=362.9
Q ss_pred ceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC
Q psy2427 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC 108 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 108 (660)
++|+||.|++++++++++++|.+|++||||+++++.+.++++.+.|++.|+++.+|+++++||+.+.|+++++.++++++
T Consensus 2 ~~i~fG~g~~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~ 81 (414)
T cd08190 2 SNIRFGPGVTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQF 81 (414)
T ss_pred CeEEECcCHHHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceeee
Q psy2427 109 DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGI 188 (660)
Q Consensus 109 D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~~ 188 (660)
|+||||||||+||+||+++..+.+++.+++||+....+.+.+...+.+|+|+||||+|||||+|+++|+++++.+.|.++
T Consensus 82 D~IIaiGGGSviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagTGSE~t~~avi~~~~~~~K~~i 161 (414)
T cd08190 82 DAFVAVGGGSVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTTAGTGSETTGVAIFDLPELKAKTGI 161 (414)
T ss_pred CEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCCCchhhhhccceeeeccCCCeeEEe
Confidence 99999999999999999999888776788998754333343445566899999999999999999999998888899999
Q ss_pred ecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2427 189 ANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268 (660)
Q Consensus 189 ~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i~ 268 (660)
.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++..+..+.+..+
T Consensus 162 ~~~~~~P~~ailDp~l~~tlP~~~ta~tg~DAl~haiEay~s~~~~~~~~~~~--------------------------- 214 (414)
T cd08190 162 ASRALKPTLGIVDPLNTLTMPSRVTASSGLDVLCHALESYTAIPYNQRPPRPS--------------------------- 214 (414)
T ss_pred eCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHhcccccccccccc---------------------------
Confidence 99999999999999999999999999999999999999999831111100000
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHHh
Q psy2427 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNF 348 (660)
Q Consensus 269 ~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~~ 348 (660)
T Consensus 215 -------------------------------------------------------------------------------- 214 (414)
T cd08190 215 -------------------------------------------------------------------------------- 214 (414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchh
Q psy2427 349 TAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERV 428 (660)
Q Consensus 349 ~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~ 428 (660)
T Consensus 215 -------------------------------------------------------------------------------- 214 (414)
T cd08190 215 -------------------------------------------------------------------------------- 214 (414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy2427 429 TAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASA 508 (660)
Q Consensus 429 ~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~ 508 (660)
.++.++.|...||++|.+|+++++++.++++++++|+.|+++|++|+|||+
T Consensus 215 -----------------------------~~~~~~~~~~~~p~sd~~a~~ai~li~~~l~~a~~~~~d~~AR~~~~~As~ 265 (414)
T cd08190 215 -----------------------------NPIQRPAYQGSNPISDIWSLQALRIVGKYLRRAVADPDDLEARSQMHLAST 265 (414)
T ss_pred -----------------------------cccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 000112233678999999999999999999999999999999999999999
Q ss_pred HHhHhhhcccchhhhhhhccccCCcc-ccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 509 MAGVGFGNAGVHLCHGLSYPISGNVK-TFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 509 ~ag~~~~~~g~~~~H~l~~~l~~~~~-~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
+||++|+++|++++|+|+|+||+.+. -+|| .|+-.+++++||+++++++|+||+||.+..++||++++++||.+..+.
T Consensus 266 laG~a~~~~g~~~~Hai~~~l~~~~~~~~~~-~~~~~~~~ipHG~~~ai~lp~vl~~n~~~~~~k~~~~a~~lg~~~~~~ 344 (414)
T cd08190 266 FAGIGFGNAGVHLCHGMSYPIAGLVKDYKAP-DYPVDHPLVPHGLSVVVTAPAVFRFTAPACPERHLEAAEILGADTSNA 344 (414)
T ss_pred HHHHHHhCcchhhhhHhccHhhcCcCccccc-cccccCCCCChHHHHHHHHHHHHHhhhhhCHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999863 2233 443334469999999999999999999999999999999999876666
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHh
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~ 657 (660)
++++.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+.+...+||+++|+|++++||+++|
T Consensus 345 ~~~~~~~~~i~~i~~l~~~lglP~~L~e~Gv~~~~~~~ia~~a~~~~~~~~~np~~~t~~~i~~il~~~~ 414 (414)
T cd08190 345 KIEDAGEVLADALRKLMRDLGVPDGLAALGYTESDIPALVKGTLPQQRVLKLAPRPVDEEDLAALFEESM 414 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHhC
Confidence 6778888899999999999999999999999999999999999866666678999999999999999986
|
Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT |
| >PRK15454 ethanol dehydrogenase EutG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-70 Score=592.05 Aligned_cols=374 Identities=31% Similarity=0.454 Sum_probs=332.4
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
.+.|.+ |++|+||.|++++|+++++++|.+|++||+|+++.+.+.++++.+.|++.|+++.+|+++++||+.+.|++++
T Consensus 21 ~~~f~~-P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~ 99 (395)
T PRK15454 21 VKTFSV-PPVTLCGPGAVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAV 99 (395)
T ss_pred hceeec-CCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHH
Confidence 456766 5899999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred HHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 101 KFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 101 ~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
+.++++++|+||||||||+||+||+++..+.+++..++++.. .+...+.+|+|+||||+|||||+|+++|++++
T Consensus 100 ~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~------~~~~~~~~P~iaIPTtaGTGSE~t~~avi~~~ 173 (395)
T PRK15454 100 AQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSE------TSVLQPRLPLIAIPTTAGTGSETTNVTVIIDA 173 (395)
T ss_pred HHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCccHHHHhc------ccccCCCCCEEEECCCCcchhhhCCeEEEEcC
Confidence 999999999999999999999999999998887555655531 22334568999999999999999999999998
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
+.+.|.++.++.++|+++|+||+++.++|+++++++++|||+|++|+|++. ..
T Consensus 174 ~~~~K~~~~~~~~~P~~ailDP~l~~~~P~~~ta~tg~DAl~HaiE~y~s~-------------------~~-------- 226 (395)
T PRK15454 174 VSGRKQVLAHASLMPDVAILDAALTEGVPSHVTAMTGIDALTHAIEAYSAL-------------------NA-------- 226 (395)
T ss_pred CCCeeEEeeCCcccCCEEEEChhhhccCCHHHHHHHHHHHHHHHHHHHHcc-------------------CC--------
Confidence 889999999999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
T Consensus 227 -------------------------------------------------------------------------------- 226 (395)
T PRK15454 227 -------------------------------------------------------------------------------- 226 (395)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 227 -------------------------------------------------------------------------------- 226 (395)
T PRK15454 227 -------------------------------------------------------------------------------- 226 (395)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
||++|.+|+++++++.++++++++|++|+++|
T Consensus 227 ------------------------------------------------np~td~~a~~ai~li~~~l~~a~~~~~d~~AR 258 (395)
T PRK15454 227 ------------------------------------------------TPFTDSLAIGAIAMIGKSLPKAVGYGHDLAAR 258 (395)
T ss_pred ------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 34555556666666666666667778899999
Q ss_pred HHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHh
Q psy2427 501 SHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~l 580 (660)
++|+|||++||++|+++|++++|+|+|+||+.| ++|||+++++++|+||+||.+.+++||+++++.+
T Consensus 259 ~~m~~As~laG~a~~~~g~g~~Hal~h~lg~~~-------------~ipHG~~~aillP~v~~~n~~~~~~k~~~la~~l 325 (395)
T PRK15454 259 ESMLLASCMAGMAFSSAGLGLCHAMAHQPGAAL-------------HIPHGLANAMLLPTVMEFNRMVCRERFSQIGRAL 325 (395)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhhhhhhccCC-------------CCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHHh
Confidence 999999999999999999999999999999974 7999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHH
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENS 656 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a 656 (660)
|...+ ....+++++++|++++|+|++|+|+|+++++++++++.++.+ ....+||+++|+|++++||+++
T Consensus 326 ~~~~~------~~~~~i~~i~~l~~~lglP~~L~e~gv~~~~~~~ia~~a~~~-~~~~~nP~~~t~e~i~~il~~~ 394 (395)
T PRK15454 326 RTKKS------DDRDAINAVSELIAEVGIGKRLGDVGATSAHYGAWAQAALED-ICLRSNPRTASLEQIVGLYAAA 394 (395)
T ss_pred CCCcc------cHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhc-ccccCCCCCCCHHHHHHHHHhc
Confidence 85411 123568999999999999999999999999999999999854 4456799999999999999875
|
|
| >TIGR02638 lactal_redase lactaldehyde reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-69 Score=583.79 Aligned_cols=377 Identities=30% Similarity=0.463 Sum_probs=337.8
Q ss_pred eeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHH
Q psy2427 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATK 101 (660)
Q Consensus 22 ~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~ 101 (660)
+.|.+ |++|+||.|++++++++++++|.+|++||||+++++.++.+++.+.|++.|+++.+|+++++||+.+.|+++++
T Consensus 2 ~~~~~-p~~i~fG~g~l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~ 80 (379)
T TIGR02638 2 NRLIL-NETSYFGAGAIEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVA 80 (379)
T ss_pred CcccC-CCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHH
Confidence 34555 58999999999999999999999999999999998887889999999999999999999999999999999999
Q ss_pred HhHhcCCCEEEEecCchhhhHHHHHHhHhcCCC-cchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPE-AEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 102 ~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~-~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
.++++++|+||||||||++|+||+++..+.+++ .+++||... .+...+.+|+|+||||+|||||+|+++|++++
T Consensus 81 ~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~-----~~~~~~~~P~i~IPTTagTGse~t~~avi~~~ 155 (379)
T TIGR02638 81 AFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGV-----APTKKPGVPIIAIPTTAGTAAEVTINYVITDE 155 (379)
T ss_pred HHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCC-----CccCCCCCCEEEECCCCchhhhhCCEEEEEEC
Confidence 999999999999999999999999999887753 567787521 12234569999999999999999999999999
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
+++.|..+.++.++|+.+|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 156 ~~~~K~~~~~~~~~P~~ai~Dp~l~~~lP~~~~a~t~~Dal~H~iEa~~s~-------------------~~-------- 208 (379)
T TIGR02638 156 ENKRKFVCVDPHDIPDVAVIDAEMMYSMPKSLTAATGMDALTHAIEGYITK-------------------GA-------- 208 (379)
T ss_pred CCCeeEEEeCCCccccEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHHhc-------------------CC--------
Confidence 888899999999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
T Consensus 209 -------------------------------------------------------------------------------- 208 (379)
T TIGR02638 209 -------------------------------------------------------------------------------- 208 (379)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 209 -------------------------------------------------------------------------------- 208 (379)
T TIGR02638 209 -------------------------------------------------------------------------------- 208 (379)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
+|++|.+|.+++++|.++++++++||.|+++|
T Consensus 209 ------------------------------------------------~~~sd~~a~~a~~li~~~l~~~~~~~~~~~aR 240 (379)
T TIGR02638 209 ------------------------------------------------WELTDMLHLKAIEIIARWLRSAVEGGKDLEAR 240 (379)
T ss_pred ------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 34555666666666666677777778899999
Q ss_pred HHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHh
Q psy2427 501 SHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~l 580 (660)
++|+|||++||++|+++|+|++|+|+|+|++.| ++|||.++++++|+||+||.+..++|+.+++++|
T Consensus 241 ~~l~~As~laG~a~~~~g~g~~Hal~~~l~~~~-------------~i~HG~a~ai~lp~vl~~~~~~~~~~~~~la~~~ 307 (379)
T TIGR02638 241 EQMALGQYVAGMGFSNVGLGLVHGMAHPLGAFY-------------NTPHGVANAILLPHVMEFNAEFTGEKYREIAKAM 307 (379)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhhhhhcCc-------------CCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 999999999999999999999999999999874 7999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHH
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il 653 (660)
|....+.+.++.+..+++.+++|++++|+|++|+|+|+++++++.+++.++.+ ....+||+++|++++++||
T Consensus 308 g~~~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~~a~~a~~~-~~~~~nP~~~~~~~i~~i~ 379 (379)
T TIGR02638 308 GVKTEGMSDEEARDAAVEAVKTLSKRVGIPEGLSELGVKEEDIPALAEAALAD-VCTGGNPRETTVEEIEELY 379 (379)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHhC-cCcCCCCCCCCHHHHHHhC
Confidence 98766666777888899999999999999999999999999999999999854 4456799999999999986
|
This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase. |
| >PRK10624 L-1,2-propanediol oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=578.65 Aligned_cols=379 Identities=28% Similarity=0.428 Sum_probs=335.7
Q ss_pred eeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHH
Q psy2427 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATK 101 (660)
Q Consensus 22 ~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~ 101 (660)
+.|.. |++|+||.|++++|+++++++|.+|++||+|+++.+.+..+++.+.|++.|+++.+|+++++||+.+.|+++++
T Consensus 3 ~~~~~-~~~i~~G~g~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~ 81 (382)
T PRK10624 3 NRMIL-NETAYFGRGAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVE 81 (382)
T ss_pred ccccC-CCeEEECcCHHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHH
Confidence 34555 48999999999999999999998999999999998888889999999999999999999999999999999999
Q ss_pred HhHhcCCCEEEEecCchhhhHHHHHHhHhcCCC-cchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPE-AEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 102 ~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~-~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
.+++.++|+||||||||++|+||++++.+.+++ .+++||... .+...+.+|+|+||||+|||||+|+.+|++++
T Consensus 82 ~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~-----~~~~~~~~p~i~VPTTagTGse~t~~avi~~~ 156 (382)
T PRK10624 82 VFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGV-----APTKKPSVPIIAIPTTAGTAAEVTINYVITDE 156 (382)
T ss_pred HHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCc-----CcccCCCCCEEEECCCCchhhhhcceeeeecC
Confidence 999999999999999999999999999888764 467887531 12234558999999999999999999999998
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
+.+.|..+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++ ...+|++|.++
T Consensus 157 ~~~~k~~~~~~~~~P~~ailDp~l~~tlP~~~~a~~g~Dal~HaiE~y~s-------------------~~~~p~sd~~a 217 (382)
T PRK10624 157 EKRRKFVCVDPHDIPQVAFVDADMMDSMPPGLKAATGVDALTHAIEGYIT-------------------RGAWALTDMLH 217 (382)
T ss_pred CCCeeEEeeCccccCCEEEEChHhhcCCCHHHHHHHHHhHHHHHHHHHHc-------------------CCCCHHHHHHH
Confidence 88889999999999999999999999999999999999999999999988 24555555555
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
+++++++.+++
T Consensus 218 ~~ai~~i~~~l--------------------------------------------------------------------- 228 (382)
T PRK10624 218 LKAIEIIAGAL--------------------------------------------------------------------- 228 (382)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 55555555544
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 229 -------------------------------------------------------------------------------- 228 (382)
T PRK10624 229 -------------------------------------------------------------------------------- 228 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
++++++ +.++|
T Consensus 229 -------------------------------------------------------------------~~~~~~--~~~aR 239 (382)
T PRK10624 229 -------------------------------------------------------------------RGAVAG--DKEAG 239 (382)
T ss_pred -------------------------------------------------------------------HHHHcC--CHHHH
Confidence 444444 23899
Q ss_pred HHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHh
Q psy2427 501 SHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~l 580 (660)
++|+|||++||++|+++|++++|+|+|+||+.| ++|||.++++++|+||+||.+..++|++++++.|
T Consensus 240 ~~~~~as~laG~a~~~~g~g~~Hal~h~l~~~~-------------~ipHG~~~ai~lp~vl~~~~~~~~~k~~~la~~~ 306 (382)
T PRK10624 240 EGMALGQYIAGMGFSNVGLGLVHGMAHPLGAFY-------------NTPHGVANAILLPHVMEYNADFTGEKYRDIARAM 306 (382)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhhhHHhhCC-------------CCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 999999999999999999999999999999974 7999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHh
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~ 657 (660)
|...++.++++.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+. ...+||+++|++|+++||+++|
T Consensus 307 g~~~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~~a~~a~~~~-~~~~nP~~~t~~~i~~i~~~~~ 382 (382)
T PRK10624 307 GVKVEGMSLEEARNAAVEAVKALNRDVGIPPHLRDVGVKEEDIPALAQAAFDDV-CTGGNPREATLEDIVELYKKAW 382 (382)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhCc-CCCCCCCCCCHHHHHHHHHHhC
Confidence 987666677788888999999999999999999999999999999999998543 3456999999999999999886
|
|
| >cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=578.71 Aligned_cols=373 Identities=35% Similarity=0.542 Sum_probs=336.5
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||||+++.+.+..+++.+.|++.++++.+|++++++|+.+.|+++++.+++.+
T Consensus 4 p~~i~~G~g~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~ 83 (376)
T cd08193 4 PPRIVFGAGSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAG 83 (376)
T ss_pred CCeEEECcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcC
Confidence 58999999999999999999988999999999988887889999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||++|..+.++ .++|||... .+...+.+|+|+||||+|||||+|+++|+++.+ +.|.+
T Consensus 84 ~D~IIaiGGGs~iD~aK~ia~~~~~~-~~~~~~~~~-----~~~~~~~~p~i~IPTTagtgSe~t~~avi~~~~-~~K~~ 156 (376)
T cd08193 84 ADGVIGFGGGSSMDVAKLVAVLAGSD-QPLADMYGV-----DLVAGPRLPLILVPTTAGTGSEVTPIAIVTTPE-TLKVG 156 (376)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHHCC-CCHHHHhCC-----CccCCCCCCEEEeCCCCcchHhhCCeEEEEcCC-CceEE
Confidence 99999999999999999999988775 678888632 123345689999999999999999999999887 89999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 157 ~~~~~~~P~~ai~Dp~l~~~lP~~~~~~~~~Dal~h~~E~y~s~-------------------~---------------- 201 (376)
T cd08193 157 VVSPHLLPDLAILDPELTLGLPPHITAATGIDAMVHAIEAYTSR-------------------K---------------- 201 (376)
T ss_pred eeCccccCCEEEEChHHHcCCCHHHHHHHhHHHHHHHHHHHHcC-------------------C----------------
Confidence 99999999999999999999999999999999999999999872 1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 202 -------------------------------------------------------------------------------- 201 (376)
T cd08193 202 -------------------------------------------------------------------------------- 201 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 202 -------------------------------------------------------------------------------- 201 (376)
T cd08193 202 -------------------------------------------------------------------------------- 201 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
..+|+++.+|+++++++.++++++++|+.|.++|++|+|||
T Consensus 202 ---------------------------------------~~~p~td~~a~~ai~~i~~~l~~a~~~~~~~~ar~~~~~As 242 (376)
T cd08193 202 ---------------------------------------KANPLSDLLALEALRLLGANIPRAVKDGDDLEAREAMLLGA 242 (376)
T ss_pred ---------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 13455666666666666777777777788999999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++|+++|++++|+|+|+|++.| ++|||+++++++|+||+||.+..++||.++++.+|....+.
T Consensus 243 ~laG~a~~~~g~g~~Hal~h~l~~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 309 (376)
T cd08193 243 MYAGQAFANAPVAAVHALAYPLGGKF-------------HIPHGLSNALVLPHVLRFNAPAAEERYAELADALGPDLAGA 309 (376)
T ss_pred HHHHHHHhhhhHHHHHHhcchhhcCc-------------CCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCCcCCC
Confidence 99999999999999999999999974 79999999999999999999999999999999998766655
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
++++.+..+++++++|++++|+|++|+|+|+++++++.+++.++.++....+||+++|++++++||+
T Consensus 310 ~~~~~~~~~~~~~~~l~~~lglp~~L~e~gi~~~~~~~~a~~a~~~~~~~~~nP~~~t~~~v~~i~~ 376 (376)
T cd08193 310 SDEEAAEALIDAMEALVADLGIPQRLREVGVTEDDLPMLAEDAMKQTRLLVNNPRELTEEDALAIYR 376 (376)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHHhC
Confidence 6677888899999999999999999999999999999999999865555678999999999999984
|
5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene. |
| >cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=578.46 Aligned_cols=386 Identities=33% Similarity=0.504 Sum_probs=347.4
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++| +|++||+|+++.+.+.++++.+.|++.|+++.+|++++++|+.+++.+.++.+++.+
T Consensus 1 p~~i~fG~g~l~~l~~~~~~~g-~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~ 79 (386)
T cd08191 1 PGTLLFGAGQRRQLPRLAARLG-SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAG 79 (386)
T ss_pred CCeEEECcCHHHHHHHHHHHcC-CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcC
Confidence 5799999999999999999999 999999999988777889999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++..+.++ .++|||... .+...+.+|+|+||||+|||||+|+++|+++++.+.|.+
T Consensus 80 ~D~IIaiGGGS~iD~aK~ia~~~~~~-~~~~~~~~~-----~~~~~~~~p~i~IPTtagTGSE~t~~avi~~~~~~~K~~ 153 (386)
T cd08191 80 PDVIIGLGGGSCIDLAKIAGLLLAHG-GDVRDYYGE-----FKVPGPVLPLIAVPTTAGTGSEVTPVAVLTDPDNAMKVG 153 (386)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHhCC-CCHHHHhCc-----cccCCCCCCEEEEeCCCcchhhhCCeEEEEeCCCCceEE
Confidence 99999999999999999999988876 678898632 123345689999999999999999999999988889999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. ..++++..
T Consensus 154 ~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~h~iEa~~s~-------------------~~~~~~~~--------- 205 (386)
T cd08191 154 VASPHLRPAIAIIDPELTLTCPPGVTADSGADALTHAIESFTAM-------------------DRNPFPDG--------- 205 (386)
T ss_pred EeCCCcccCEEEECHHHhcCCCHHHHHHHHHHHHHHHHHHHhCC-------------------Cccccccc---------
Confidence 99999999999999999999999999999999999999999983 11110000
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (386)
T cd08191 206 -------------------------------------------------------------------------------- 205 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (386)
T cd08191 206 -------------------------------------------------------------------------------- 205 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
..++.+...||++|.+|+++++++.++++++++|+.|.++|++|+|||
T Consensus 206 --------------------------------~~~~~~~~~~p~sd~~a~~a~~li~~~l~~a~~~~~~~~ar~~~~~as 253 (386)
T cd08191 206 --------------------------------DADHVYSGKNALTDLFAREAIRLIGRSLPRAVRDGDDLEARTDMMLAA 253 (386)
T ss_pred --------------------------------cccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 000111267899999999999999999999999999999999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++|+++|+|++|+|+|+||++| +++||+++++++|+||+||.+.+++||+++++++|....+.
T Consensus 254 ~laG~a~~~~~~g~~Hal~~~l~~~~-------------~i~HG~~~aillp~v~~~n~~~~~~k~~~~a~~~~~~~~~~ 320 (386)
T cd08191 254 LLAGLAFGTAGTAAVHALQYPVGALT-------------HTSHGFGVAALLPYVMRFNLPARREEFAEIGRVLGVAAGDH 320 (386)
T ss_pred HHHHHHHhccchHHHHHhhhhhhcCc-------------CCChHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999974 79999999999999999999999999999999999877666
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il 653 (660)
++++.+..+++++++|++++|+|++|+|+|+++++++++++.++..++...+||+++|++|+++||
T Consensus 321 ~~~~~~~~~~~~l~~l~~~lglP~~L~e~gv~~~~~~~~a~~a~~~~~~~~~nP~~~t~~~v~~i~ 386 (386)
T cd08191 321 SADEQAAAAITRVEALLAAIGIPTTLAALGVTEADLDGVAAQALAVTRLIKNNPRPLDEEDYRAIL 386 (386)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHhC
Confidence 667788889999999999999999999999999999999999986556667899999999999985
|
6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. |
| >cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-68 Score=573.31 Aligned_cols=375 Identities=30% Similarity=0.431 Sum_probs=331.6
Q ss_pred ceEEECcChHHHHHHHHHhc---CCCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhH
Q psy2427 29 STIRIGPGVTREVGMDMVNM---KAQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVR 104 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~---g~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~ 104 (660)
++|+||.|++++++++++++ |.+|++||+|+++.+ .+.++++.+.|++.|+++.+|++++++|+.++|+++++.++
T Consensus 2 t~i~fG~g~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~ 81 (383)
T cd08186 2 TTLYFGVGAIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGR 81 (383)
T ss_pred CeEEECcCHHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998 779999999998654 66679999999999999999999999999999999999999
Q ss_pred hcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCc
Q psy2427 105 SVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKA 184 (660)
Q Consensus 105 ~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~ 184 (660)
++++|+||||||||++|+||+++..+.+++.+.+++... .....+.+|+|+||||+|||||+|+++|+++...+.
T Consensus 82 ~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~-----~~~~~~~~P~iaIPTTagTGSE~t~~avi~~~~~~~ 156 (383)
T cd08186 82 EFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEF-----KFTPEKALPLIAINLTHGTGTEVDRFAVASIDETEE 156 (383)
T ss_pred HcCCCEEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCC-----CcccCCCCCEEEEeCCChhhhhhCCeEEEEEcCCCc
Confidence 999999999999999999999999998776667776521 122345689999999999999999999999988889
Q ss_pred eeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy2427 185 KTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFAL 264 (660)
Q Consensus 185 K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai 264 (660)
|.++.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 157 K~~~~~~~~~P~~ai~Dp~l~~~~P~~~~a~tg~DAl~HaiE~~~s~-------------------~------------- 204 (383)
T cd08186 157 KPGIAYDCIYPDYSIDDPALTTTLPPDQTIYTSIDALNHVVEAATTT-------------------T------------- 204 (383)
T ss_pred eEEEeCCccccCEEEEChHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------C-------------
Confidence 99999999999999999999999999999999999999999999872 2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHH
Q psy2427 265 QTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPA 344 (660)
Q Consensus 265 ~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~ 344 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (383)
T cd08186 205 -------------------------------------------------------------------------------- 204 (383)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCC
Q psy2427 345 VFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 424 (660)
Q Consensus 345 ~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~ 424 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (383)
T cd08186 205 -------------------------------------------------------------------------------- 204 (383)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy2427 425 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMH 504 (660)
Q Consensus 425 P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~ 504 (660)
.||++|.+|+++++++.++++++++|+.|.++|++|+
T Consensus 205 -------------------------------------------~~~~sd~~a~~a~~li~~~l~~a~~~~~~~~ar~~m~ 241 (383)
T cd08186 205 -------------------------------------------ANPYSILLAKEAVRLIAEYLPKALEEPDNLQARYWLL 241 (383)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2455666677777777777777777888999999999
Q ss_pred HHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCC
Q psy2427 505 LASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 584 (660)
Q Consensus 505 ~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~ 584 (660)
|||++||++|+++|+|++|+|+|+||+++ | ++|||+++++++|+||+||.+..++||+++++.+|...
T Consensus 242 ~as~laG~a~~~~~~g~~Hai~~~l~~~~-------~-----~ipHG~~~aillp~vl~~n~~~~~~~~~~la~~~~~~~ 309 (383)
T cd08186 242 YASAIAGIAIDNGLLHLTHALEHPLSALK-------P-----DLPHGAGLAILLPAVVKHIYPATPEILAELLRPLVPGL 309 (383)
T ss_pred HHHHHHHHHHhcchhHHHHHhcCchhcCC-------C-----CCChHHHHHHHHHHHHHHhhhhCHHHHHHHHHHhCccc
Confidence 99999999999999999999999999862 1 69999999999999999999999999999999998554
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCC---CCCCCccCCHHHHHHHHHHHh
Q psy2427 585 SRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRI---TKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~---~~~~P~~~t~e~i~~il~~a~ 657 (660)
.+. .+.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+... ..+||+++|+|++++||+++|
T Consensus 310 ~~~--~~~a~~~i~~l~~l~~~lglP~~L~~~gv~~~~~~~~a~~a~~~~~~~~~~~~nP~~~t~e~i~~il~~~~ 383 (383)
T cd08186 310 KGV--PEEAEKAAKAVEKWLFSIGITEKLSDYGFTEGDVEKLTELAVTTPSLKLLLSLAPVEASREVIARIYTDSL 383 (383)
T ss_pred CCc--hHHHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHhC
Confidence 322 23456789999999999999999999999999999999998754332 357999999999999999875
|
Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover. |
| >cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-68 Score=573.03 Aligned_cols=377 Identities=30% Similarity=0.493 Sum_probs=337.1
Q ss_pred eeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHH
Q psy2427 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATK 101 (660)
Q Consensus 22 ~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~ 101 (660)
|.|.+ |++|+||.|++++++++++++|.+|++||+|+++.+.+..+++.+.|++.|+++.+|++++++|+.+.|+++++
T Consensus 1 ~~~~~-p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~ 79 (377)
T cd08176 1 NRFYL-PPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLA 79 (377)
T ss_pred CcccC-CCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHH
Confidence 34555 59999999999999999999998999999999988777889999999999999999999999999999999999
Q ss_pred HhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCC
Q psy2427 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEP 181 (660)
Q Consensus 102 ~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~ 181 (660)
.++++++|+||||||||+||+||+++..+.++ .++||+... .+...+.+|+|+||||+|||||+|+.+|+++++
T Consensus 80 ~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~-~~~~~~~~~-----~~~~~~~~P~i~IPTtagTgSe~t~~avi~~~~ 153 (377)
T cd08176 80 VFKKEGCDFIISIGGGSPHDCAKAIGIVATNG-GDIRDYEGV-----AKSKKPAVPIVAINTTAGTASEVTINYVITDEE 153 (377)
T ss_pred HHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCC-CCHHHHhCc-----CccCCCCCCEEEeCCCCcchhccCCcEEEEEcC
Confidence 99999999999999999999999999988876 678887532 123345599999999999999999999999988
Q ss_pred CCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q psy2427 182 LKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWAR 261 (660)
Q Consensus 182 ~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~ 261 (660)
.+.|.++.++.++|+.+|+||+++.++|++++++|++|+|+|++|+|++. ..+
T Consensus 154 ~~~K~~~~~~~~~P~~~ivDp~l~~~~P~~~~a~~~~Dal~h~~E~~~s~-------------------~~~-------- 206 (377)
T cd08176 154 RKVKMVIVDPNDIPIVAVNDPELMVGMPPGLTAATGMDALTHAIEAYVST-------------------GAN-------- 206 (377)
T ss_pred CCceeEEeCccccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CCC--------
Confidence 88899999999999999999999999999999999999999999999872 233
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhh
Q psy2427 262 FALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMS 341 (660)
Q Consensus 262 ~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~ 341 (660)
T Consensus 207 -------------------------------------------------------------------------------- 206 (377)
T cd08176 207 -------------------------------------------------------------------------------- 206 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccc
Q psy2427 342 APAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHT 421 (660)
Q Consensus 342 l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~ 421 (660)
T Consensus 207 -------------------------------------------------------------------------------- 206 (377)
T cd08176 207 -------------------------------------------------------------------------------- 206 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q psy2427 422 LSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARS 501 (660)
Q Consensus 422 ~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~ 501 (660)
|+++.+|+++++++.++++++++++.|.++|+
T Consensus 207 ------------------------------------------------~~s~~~a~~a~~~i~~~l~~~~~~~~~~~ar~ 238 (377)
T cd08176 207 ------------------------------------------------PITDACALKAIELIAKNLRRAVANGKDLEARE 238 (377)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44555666666666667777777788899999
Q ss_pred HHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhC
Q psy2427 502 HMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLG 581 (660)
Q Consensus 502 ~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg 581 (660)
+|+||+++||++++++|+|++|+|+|.|++.+ +++||+++++++|+||+||.+..++|+++++++||
T Consensus 239 ~l~~as~laG~a~~~~g~g~~Hal~h~l~~~~-------------~i~HG~~~ai~lp~vl~~~~~~~~~k~~~~a~~lg 305 (377)
T cd08176 239 GMAYAQYLAGMAFNNAGLGYVHSMAHQLGGFY-------------DLPHGVCNAILLPHVMEYNAPACPERFADIAEAMG 305 (377)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhhhHhhcC-------------CCChHHHHHHHHHHHHHHhhhcCHHHHHHHHHHhC
Confidence 99999999999999999999999999999874 79999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 582 ADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
........++.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+.. ..+||+++|++++++||+
T Consensus 306 ~~~~~~~~~~~~~~~~~~i~~l~~~lglP~~L~e~gv~~~~~~~~a~~a~~~~~-~~~~p~~~t~~~i~~il~ 377 (377)
T cd08176 306 VDTEGLSDEEAAEAAIDAVRALSEDVGIPAGLRELGVKEEDFELLAENALKDAC-AGGNPRKATKEDIIAIYK 377 (377)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhCcC-CCCCCCCCCHHHHHHHhC
Confidence 866555566777788999999999999999999999999999999999985544 567999999999999985
|
Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to |
| >cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=571.00 Aligned_cols=372 Identities=31% Similarity=0.514 Sum_probs=334.2
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||+|+++.+.++.+++.+.|++.|+++.+|++++++|+.+.|+++++.+++.+
T Consensus 6 ~~~i~~G~g~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~ 85 (377)
T cd08188 6 APEIIFGRGALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENG 85 (377)
T ss_pred CCceEECcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcC
Confidence 46899999999999999999998999999999988877889999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++..+.++ .+.|||... .+...+.+|+|+||||+|||||+|+++|+++.+.+.|.+
T Consensus 86 ~d~IIaiGGGsviD~AK~ia~~~~~~-~~~~~~~~~-----~~~~~~~~p~i~IPTT~gTgSE~t~~avi~d~~~~~K~~ 159 (377)
T cd08188 86 CDVIIAVGGGSPIDCAKGIGIVASNG-GHILDFEGV-----DKITRPLPPLICIPTTAGSGADVSQFAIITDTERKVKMA 159 (377)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHHCC-CCHHHHhCc-----ccccCCCCCEEEECCCCccccccCCeEEEEeCCCCeeEE
Confidence 99999999999999999999988765 567887632 123445689999999999999999999999988889999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++ ...|
T Consensus 160 i~~~~~~P~~vi~Dp~l~~~lP~~~~~~~~~Dal~haiE~~~s-------------------~~~~-------------- 206 (377)
T cd08188 160 IISKSLVPDIALIDPETLTTMPPELTAATGLDALTHAIEAYVS-------------------NASS-------------- 206 (377)
T ss_pred EeCccccCCEEEECHHHHcCCCHHHHHHHHHHHHHHHHHHHHc-------------------CCCC--------------
Confidence 9999999999999999999999999999999999999999987 2334
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 207 -------------------------------------------------------------------------------- 206 (377)
T cd08188 207 -------------------------------------------------------------------------------- 206 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 207 -------------------------------------------------------------------------------- 206 (377)
T cd08188 207 -------------------------------------------------------------------------------- 206 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
|++|.+|+++++++.++++++++|+.|.++|++|+|||
T Consensus 207 ------------------------------------------~~sd~~a~~a~~~i~~~L~~~~~~~~~~~ar~~l~~As 244 (377)
T cd08188 207 ------------------------------------------PLTDLHALEAIRLIAANLPPAIANPTDLEARESMMLAS 244 (377)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44555555566666666666667788899999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++|+|+|++++|+|+|+||+.| ++|||+++++++|+||+||.+..++||++++++||....+.
T Consensus 245 ~laG~a~~~~~~g~~Hal~~~l~~~~-------------~i~HG~~~ai~lp~vl~~~~~~~~~~~~~la~~~g~~~~~~ 311 (377)
T cd08188 245 LQAGLAFSNAILGAVHAMAHSLGGLL-------------DLPHGECNAILLPHVMEFNYPAAPERYARIAEALGLDVRGL 311 (377)
T ss_pred HHHHHHHhchhHHHHHHHhhhhhhCc-------------CCChHHHHHHHHHHHHHhhhhcCHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999874 79999999999999999999999999999999999877666
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
+.++.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+ ....+||+++|++++++||+
T Consensus 312 ~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~ia~~a~~~-~~~~~~p~~~~~~~i~~il~ 377 (377)
T cd08188 312 TTEEAALAVIEAVRRLRAALGVPETLGDLGVKREDIPLLARNALKD-ACMVTNPRDATVEDIEAIYE 377 (377)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhC-cccCCCCCCCCHHHHHHHhC
Confidence 6677788899999999999999999999999999999999999854 44567999999999999985
|
Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. |
| >cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-67 Score=567.65 Aligned_cols=372 Identities=30% Similarity=0.476 Sum_probs=335.8
Q ss_pred ccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 27 ASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 27 ~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
.|++|+||.|++++|+++++++|.+|++||+|+++++.+.++++.+.|++.|+++.+|+++++||+.+.|+++++.+++.
T Consensus 3 ~p~~i~~G~g~l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~ 82 (374)
T cd08189 3 PKPKLFVGSGSLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYREN 82 (374)
T ss_pred CCceEEECcCHHHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhc
Confidence 36899999999999999999999899999999998887778999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCcee
Q psy2427 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKT 186 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~ 186 (660)
++|+||||||||++|+||+++..+.++..+++||... .+...+.+|+|+||||+|||||+|+++|+++++.+.|.
T Consensus 83 ~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~-----~~~~~~~~p~i~VPTtagTGsE~t~~avi~d~~~~~K~ 157 (374)
T cd08189 83 GCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGL-----LKVKKPLPPLFAIPTTAGTGSEVTIAAVISDPETHEKY 157 (374)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCc-----cccCCCCCCEEEEECCCccccccCCeEEEEecCCCeeE
Confidence 9999999999999999999999998875578888632 23445669999999999999999999999998888899
Q ss_pred eeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2427 187 GIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266 (660)
Q Consensus 187 ~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~ 266 (660)
++.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 158 ~~~~~~~~P~~~i~Dp~l~~t~P~~~~~a~g~Dal~h~iE~~~s~-------------------~~-------------- 204 (374)
T cd08189 158 AISDPRLLPKAAALDPRLTLGLPPHITAATGMDALTHAVEAYIGR-------------------NA-------------- 204 (374)
T ss_pred EEeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CC--------------
Confidence 999999999999999999999999999999999999999999872 22
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHH
Q psy2427 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346 (660)
Q Consensus 267 i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l 346 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (374)
T cd08189 205 -------------------------------------------------------------------------------- 204 (374)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCc
Q psy2427 347 NFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 426 (660)
Q Consensus 347 ~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~ 426 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (374)
T cd08189 205 -------------------------------------------------------------------------------- 204 (374)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2427 427 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLA 506 (660)
Q Consensus 427 ~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~a 506 (660)
+|+++.+|+++++++.++++++++|++|+++|++|+||
T Consensus 205 ------------------------------------------~~~s~~~a~~a~~~i~~~l~~a~~~~~~~~ar~~l~~a 242 (374)
T cd08189 205 ------------------------------------------TPESDAYALAAIKLIFENLPKAYEDGSNLEAREAMALA 242 (374)
T ss_pred ------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34556666666666777777777778899999999999
Q ss_pred HHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCC
Q psy2427 507 SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSR 586 (660)
Q Consensus 507 s~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~ 586 (660)
+++||++|+++|++++|+|+|.|++.| +++||.++++++|+||+||.+..++|+.++++.||.+..+
T Consensus 243 s~lag~a~~~~g~g~~Hal~h~l~~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~~~~~~la~~~g~~~~~ 309 (374)
T cd08189 243 SYYAGLAFTRAGVGYVHAIAHQLGGVY-------------GIPHGLANAIVLPHVLEFYGDAAEDRLAELADALGLGDAG 309 (374)
T ss_pred HHHHHHHHhcccHHHHHHhhhhhhcCC-------------CCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999974 7999999999999999999999999999999999987666
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHH
Q psy2427 587 VKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653 (660)
Q Consensus 587 ~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il 653 (660)
.++++.+..+++++++|++++|+|++|+| +++++++.+++.++.+.....+||+++|+|++++||
T Consensus 310 ~~~~~~~~~~i~~i~~l~~~lglP~~L~~--v~~~~~~~~a~~a~~~~~~~~~~p~~~~~e~i~~i~ 374 (374)
T cd08189 310 ESDSDLAAAFIDAVRELNRTLGIPTTLEA--IKASDIPAIAKRALKEANPLYPVPKLMDREECEQIL 374 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCchh--CCHHHHHHHHHHHHhccccCCCCCCCCCHHHHHHhC
Confidence 66778888899999999999999999999 799999999999986544556899999999999986
|
Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. |
| >PRK15138 aldehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-67 Score=567.17 Aligned_cols=381 Identities=20% Similarity=0.289 Sum_probs=333.1
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcc-ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFL 97 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~-~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~ 97 (660)
|..|.|.+ |++|+||.|++++++++++. + +|++||||+. ....+..+++.+.|+ ++++.+|+++++||+.+.|+
T Consensus 1 m~~f~~~~-P~~i~~G~g~~~~l~~~l~~-~-~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~ 75 (387)
T PRK15138 1 MNNFNLHT-PTRILFGKGAIAGLREQIPA-D-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLM 75 (387)
T ss_pred CCCcEEeC-CceEEECcCHHHHHHHHHhc-C-CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHH
Confidence 45577776 58999999999999999987 5 8999999865 555677899999996 78899999999999999999
Q ss_pred HHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCC-cchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceE
Q psy2427 98 EATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPE-AEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSI 176 (660)
Q Consensus 98 ~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~-~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~av 176 (660)
++++.+++.++|+||||||||+||+||+++..+.+++ .+.++++.. . .....+.+|+|+||||+|||||+|+++|
T Consensus 76 ~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~---~-~~~~~~~~P~iaVPTTaGTGSE~t~~av 151 (387)
T PRK15138 76 KAVKLVREEKITFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILET---G-GKEIKSAIPMGSVLTLPATGSESNAGAV 151 (387)
T ss_pred HHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHHhc---c-CCCcCCCCCEEEEecCCccccccCCCEE
Confidence 9999999999999999999999999999998876654 267777521 1 1223455899999999999999999999
Q ss_pred EeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy2427 177 FDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVS 256 (660)
Q Consensus 177 i~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (660)
+++.+.+.|..+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 152 it~~~~~~K~~~~~~~~~P~~aivDP~l~~~~P~~~taatg~DAl~haiE~y~s~-------------------~----- 207 (387)
T PRK15138 152 ISRKTTGDKQAFHSPHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTY-------------------P----- 207 (387)
T ss_pred EEecCCCeeeeecCcchheeEEEECcHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-------------------C-----
Confidence 9988888999999999999999999999999999999999999999999999872 0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
T Consensus 208 -------------------------------------------------------------------------------- 207 (387)
T PRK15138 208 -------------------------------------------------------------------------------- 207 (387)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 416 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~ 416 (660)
T Consensus 208 -------------------------------------------------------------------------------- 207 (387)
T PRK15138 208 -------------------------------------------------------------------------------- 207 (387)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2427 417 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDD 496 (660)
Q Consensus 417 d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~ 496 (660)
..+|++|.+|+++++++.+++++++.|+.|
T Consensus 208 --------------------------------------------------~~~~~td~~A~~a~~~i~~~l~~a~~~~~~ 237 (387)
T PRK15138 208 --------------------------------------------------VDAKIQDRFAEGILLTLIEEGPKALKEPEN 237 (387)
T ss_pred --------------------------------------------------CCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 123466777777788888888888888899
Q ss_pred HHHHHHHHHHHHHHhHhhhcccch---hhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHH
Q psy2427 497 LEARSHMHLASAMAGVGFGNAGVH---LCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERH 573 (660)
Q Consensus 497 ~~ar~~~~~as~~ag~~~~~~g~~---~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~ 573 (660)
.++|++|+|||++||++|+++|++ ++|+|+|+||+.| ++|||.++++++|+||+||.+..++||
T Consensus 238 ~~aR~~m~~as~lag~a~~~~g~~~~~~~Hal~h~lg~~~-------------~i~HG~~~ai~lP~vl~~~~~~~~~k~ 304 (387)
T PRK15138 238 YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMH-------------GLDHAQTLAIVLPALWNEKRDTKRAKL 304 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCchhhhhcchhhhcc-------------CCchHHHHHHHHHHHHHHhhhhCHHHH
Confidence 999999999999999999999988 7899999999974 799999999999999999999999999
Q ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHH
Q psy2427 574 IEAAELL-GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANL 652 (660)
Q Consensus 574 ~~ia~~l-g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~i 652 (660)
+++++.+ |. .+.++++.+..+++++++|++++|+|++|+|+|++++|++.+++.++.+.....+||+++|++++++|
T Consensus 305 ~~~a~~~~~~--~~~~~~~~~~~~i~~i~~l~~~lg~p~~L~~~gv~~~d~~~~a~~a~~~~~~~~~np~~~~~~~i~~i 382 (387)
T PRK15138 305 LQYAERVWNI--TEGSDDERIDAAIAATRNFFEQMGVPTRLSDYGLDGSSIPALLKKLEEHGMTQLGEHHDITLDVSRRI 382 (387)
T ss_pred HHHHHHHcCC--CCCChHHHHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHHHhcCcccCCCCCCCCHHHHHHH
Confidence 9999865 44 23345567788999999999999999999999999999999999998554444579999999999999
Q ss_pred HHHHh
Q psy2427 653 FENSM 657 (660)
Q Consensus 653 l~~a~ 657 (660)
|+++|
T Consensus 383 l~~~~ 387 (387)
T PRK15138 383 YEAAR 387 (387)
T ss_pred HHhcC
Confidence 99987
|
|
| >cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-67 Score=566.17 Aligned_cols=371 Identities=34% Similarity=0.534 Sum_probs=334.1
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||||+++.+.+..+++.+.|++.|+++.+|+++++||+.+.|+++++.+++.+
T Consensus 1 P~~i~~G~g~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~ 80 (375)
T cd08194 1 PRTIIIGEGAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGG 80 (375)
T ss_pred CCeEEECcCHHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcC
Confidence 58999999999999999998888999999999988877889999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++..+.++ .++|||... .+...+.+|+|+||||+|||||+|+++|+++.+.+.|.+
T Consensus 81 ~D~IIaiGGGS~~D~AKaia~~~~~~-~~~~~~~~~-----~~~~~~~~P~i~IPTtagtGsE~t~~avi~~~~~~~K~~ 154 (375)
T cd08194 81 CDVIIALGGGSPIDTAKAIAVLATNG-GSIRDYKGP-----RIVDKPGLPLIAIPTTAGTGSEVTRFTVITDTKTDEKML 154 (375)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHhCC-CCHHHHhCc-----ccccCCCCCEEEECCCCccccccCCeEEEEECCCCceEE
Confidence 99999999999999999999988776 578888631 223445699999999999999999999999988889999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 155 ~~~~~~~P~~~i~Dp~l~~~~P~~~~aatg~Dal~h~iE~~~s~-------------------~~--------------- 200 (375)
T cd08194 155 LKGLALLPKAAIVDPELTLTSPPRVTAATGIDALTHAIEAYVSR-------------------KA--------------- 200 (375)
T ss_pred EeCCcccCCEEEEChHHHcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CC---------------
Confidence 99999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 201 -------------------------------------------------------------------------------- 200 (375)
T cd08194 201 -------------------------------------------------------------------------------- 200 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 201 -------------------------------------------------------------------------------- 200 (375)
T cd08194 201 -------------------------------------------------------------------------------- 200 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
+|+++.+|+++++++.++++++++|++|.++|++|+||+
T Consensus 201 -----------------------------------------~~~s~~~a~~a~~li~~~l~~a~~~~~~~~ar~~l~~as 239 (375)
T cd08194 201 -----------------------------------------QPMTDLFALSAIKLIGKNLRTAYLNPDNREAREEMMLGA 239 (375)
T ss_pred -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345556666666666677777777788899999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++++++|+|++|+|+|+|++.| ++|||+++++++|+||+||.+..++||++++++||....+.
T Consensus 240 ~laG~a~~~~~~g~~Hal~~~l~~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~~~~~~~a~~lg~~~~~~ 306 (375)
T cd08194 240 TEAGIAFSNASVALVHGMSRPIGALF-------------HVPHGLSNAMLLPAVTEFSLPSAPERYADIARAMGEANEGD 306 (375)
T ss_pred HHHHHHHhchhHHHHHHhhhhhhhCC-------------CCChHHHHHHHHHHHHHhhcccCHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999874 79999999999999999999999999999999999876656
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCc----HHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSAD----IPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~----i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
++++.+..+++++++|++++|+| +|+|+|+++++ ++.+++.++.+ ....+||+++|++++++||+
T Consensus 307 ~~~~~~~~~~~~i~~l~~~~glP-~L~~~gv~~~~~~~~l~~~a~~a~~~-~~~~~~p~~~~~~~i~~i~~ 375 (375)
T cd08194 307 SDREAAEKLIEALKELNRELEVP-TLREYGIDKDAFMALIPKMAEDAIAS-GSPANNPRVPTKAEIIELYE 375 (375)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCC-CHHhcCCChHhhhhhHHHHHHHHHhC-cCCCCCCCCCCHHHHHHHhC
Confidence 66778888999999999999999 59999999998 99999999855 34468999999999999985
|
Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. |
| >cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=562.73 Aligned_cols=375 Identities=32% Similarity=0.537 Sum_probs=330.2
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
|++|+||.|++++++++++++| +|++||||+.+ ...+..+++.+.|++.|+++.+|+++++||+.++|+++++.++++
T Consensus 4 p~~i~fG~g~l~~l~~~~~~~g-~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~ 82 (380)
T cd08185 4 PTKIVFGAGKLNELGEEALKPG-KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREE 82 (380)
T ss_pred CCeEEECcCHHHHHHHHHHhcC-CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHc
Confidence 6899999999999999999988 99999999986 466788999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCcee
Q psy2427 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKT 186 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~ 186 (660)
++|+||||||||+||+||+++..+.++ .+.|||+......+.+...+.+|+|+||||+|||||+|+++|+++++++.|.
T Consensus 83 ~~D~IiavGGGS~iD~aK~ia~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~avi~~~~~~~K~ 161 (380)
T cd08185 83 GCDFVVGLGGGSSMDTAKAIAFMAANE-GDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPWAVITNPETKEKI 161 (380)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHhhCC-CCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCeEEEEcCCCCeeE
Confidence 999999999999999999999988776 6788886432111113445569999999999999999999999998888999
Q ss_pred eeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2427 187 GIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266 (660)
Q Consensus 187 ~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~ 266 (660)
++.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 162 ~~~~~~~~P~~ailDp~l~~~~P~~~~aatg~Dal~h~iEa~~s~-------------------~~-------------- 208 (380)
T cd08185 162 GLGHPATFPKISIVDPELMLTVPPHLTAYTGFDAFFHAFEAYIAN-------------------NA-------------- 208 (380)
T ss_pred EecCCCccccEEEEChHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CC--------------
Confidence 999999999999999999999999999999999999999999871 22
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHH
Q psy2427 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346 (660)
Q Consensus 267 i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l 346 (660)
T Consensus 209 -------------------------------------------------------------------------------- 208 (380)
T cd08185 209 -------------------------------------------------------------------------------- 208 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCc
Q psy2427 347 NFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 426 (660)
Q Consensus 347 ~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~ 426 (660)
T Consensus 209 -------------------------------------------------------------------------------- 208 (380)
T cd08185 209 -------------------------------------------------------------------------------- 208 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2427 427 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLA 506 (660)
Q Consensus 427 ~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~a 506 (660)
||+++.+|+++++++.++++++++|+.|.++|++|+||
T Consensus 209 ------------------------------------------~~~s~~~a~~a~~li~~~l~~a~~~~~~~~ar~~~~~a 246 (380)
T cd08185 209 ------------------------------------------NPMSDMLALEAIELIAKYLPRAVKDGSDLEAREKMAWA 246 (380)
T ss_pred ------------------------------------------ChHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556666777777777777777788899999999999
Q ss_pred HHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCC
Q psy2427 507 SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSR 586 (660)
Q Consensus 507 s~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~ 586 (660)
+++||++|+++|+|++|+|+|.||++| ++++||+++++++|+||+||.+..++||.++++.++..
T Consensus 247 s~laG~a~~~~g~g~~Hai~~~l~~~~------------~~i~HG~~~ai~lp~vl~~~~~~~~~~~~~la~~~~~~--- 311 (380)
T cd08185 247 NTLGGMVEANSGCTSPHALEHALSGLH------------PDLPHGAGLAMLSPAYFEFFARKAPEKFAFVARAEAAG--- 311 (380)
T ss_pred HHHHHHHHcCccchhhhHhhChHhccC------------CCCChHHHHHHHhHHHHHHhhhhCHHHHHHHHHhccCC---
Confidence 999999999999999999999999863 26999999999999999999999999999999865422
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCC-CCCCCCCccCCHHHHHHHHH
Q psy2427 587 VKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQH-RITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 587 ~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~-~~~~~~P~~~t~e~i~~il~ 654 (660)
..+.+.+..+++++++|++++|+|++|+|+|+++++++++++.++.+. ....+||+++|++++++||+
T Consensus 312 ~~~~~~~~~~~~~i~~~~~~lglP~~L~e~gv~~~~~~~~a~~a~~~~~~~~~~nP~~~t~~~~~~i~~ 380 (380)
T cd08185 312 LEDEEAAEDFIEALRKLLKRIGLDDLLSDLGVTKEDIPKLADNARETMGGLFEADPAELTREDIEEIYE 380 (380)
T ss_pred CChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHHhcccccCCCCCcCCHHHHHHHhC
Confidence 234566677899999999999999999999999999999999998542 34567999999999999984
|
Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea. |
| >cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=554.61 Aligned_cols=369 Identities=31% Similarity=0.455 Sum_probs=327.2
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||+|+++.+.+..+++.+.|++.|+++.+|++++++|+.+.|+++++.+++.+
T Consensus 2 p~~i~~G~g~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~ 81 (370)
T cd08192 2 PTRIRFGAGAIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGG 81 (370)
T ss_pred CceEEECcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcC
Confidence 68999999999999999999998999999999988877789999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++..+.++ .+++||.....+.. +...+.+|+|+||||+|||||+|+++|+++++.+.|.+
T Consensus 82 ~d~IIaiGGGSviD~aK~ia~~~~~~-~~~~~~~~~~~~~~-~~~~~~~p~i~VPTtagtgse~t~~avi~~~~~~~K~~ 159 (370)
T cd08192 82 CDGVIAFGGGSALDLAKAVALMAGHP-GPLWDYEDIEGGWP-RITDAIPPLIAIPTTAGTGSEVGRAAVITDEDTGRKLI 159 (370)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHhCC-CCHHHHhccccccc-ccCCCCCCEEEecCCCchhhhhCCceEEEeCCCCeeEE
Confidence 99999999999999999999988775 57888874322221 22345689999999999999999999999988889999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++ ...
T Consensus 160 ~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~~~Dal~h~~E~~~s-------------------~~~--------------- 205 (370)
T cd08192 160 IFSPHLLPKAAICDPELTLGLPAGLTAATGMDALTHCIEAYLS-------------------PGF--------------- 205 (370)
T ss_pred eeCCcccCCEEEEChhhhhCCCHHHHHHHHHHHHHHHHHHHhc-------------------CCC---------------
Confidence 9999999999999999999999999999999999999999987 223
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (370)
T cd08192 206 -------------------------------------------------------------------------------- 205 (370)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (370)
T cd08192 206 -------------------------------------------------------------------------------- 205 (370)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
||+++.+|+++++++.++++++++|++|+++|++|+||+
T Consensus 206 -----------------------------------------~~~s~~~a~~a~~~~~~~l~~~~~~~~~~~ar~~~~~as 244 (370)
T cd08192 206 -----------------------------------------NPMADGIALEGLRLISRHLERAVRDGGDLEARGGMMMAA 244 (370)
T ss_pred -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345566666666666666677777788999999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++|++ |+|++|+|+|+|++.| +++||.++++++|+||+||.+..++|++++++.++..
T Consensus 245 ~laG~a~~~-~~g~~Hal~h~l~~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~~k~~~~a~~~~~~---- 306 (370)
T cd08192 245 SMGAMAFQK-GLGAVHSLSHPLGALY-------------NLHHGLLNAVLLPYVLRFNRPAIEEKIARLARALAMG---- 306 (370)
T ss_pred HHHHHHHhh-ccHHHHHhhhHHhhCC-------------CCChHHHHHHHHHHHHHHhhhcCHHHHHHHHHHhCCc----
Confidence 999999987 9999999999999974 7999999999999999999999999999999988643
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
.+.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+.. ..+||+++|++++++||+
T Consensus 307 --~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~~a~~a~~~~~-~~~np~~~~~~~i~~i~~ 370 (370)
T cd08192 307 --LGGFADFADAILALNARLGIPHTLRELGVDEDDLDRIAEKALADPS-HATNPRPATAEDYRALLE 370 (370)
T ss_pred --hhHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhCcc-cCCCCCCCCHHHHHHHhC
Confidence 1345567899999999999999999999999999999999985544 457999999999999985
|
NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm |
| >cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=553.22 Aligned_cols=365 Identities=31% Similarity=0.457 Sum_probs=319.3
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++| +|++||||+++. ..+++.+.|++.|+++.+|+ +.++|+.+.|+++++.+++++
T Consensus 1 P~~i~~G~g~~~~l~~~l~~~~-~r~livtd~~~~---~~~~v~~~L~~~g~~~~~~~-~~~~p~~~~v~~~~~~~~~~~ 75 (374)
T cd08183 1 PPRIHFGRGVAKELPALAAELG-RRVLLVTGASSL---RAAWLIEALRAAGIEVTHVV-VAGEPSVELVDAAVAEARNAG 75 (374)
T ss_pred CCeEEECcCHHHHHHHHHHHcC-CcEEEEECCchH---HHHHHHHHHHHcCCeEEEec-CCCCcCHHHHHHHHHHHHhcC
Confidence 5899999999999999999986 999999999876 56899999999999999887 667999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++..+.++ .+.|||+.. .+...+...+.+|+|+||||+|||||+|+++|+++++.+.|.+
T Consensus 76 ~D~IIaiGGGS~~D~aK~ia~~~~~~-~~~~~~~~~-~~~~~~~~~~~~p~i~VPTtagTGSE~t~~avi~~~~~~~K~~ 153 (374)
T cd08183 76 CDVVIAIGGGSVIDAGKAIAALLPNP-GSVLDYLEG-VGRGLPLDGPPLPFIAIPTTAGTGSEVTKNAVISVPGAGFKVS 153 (374)
T ss_pred CCEEEEecCchHHHHHHHHHHHHcCC-CCHHHHHhc-cCccccCCCCCCCEEEecCCCchhHHhCCeEEEEecCCCeeEE
Confidence 99999999999999999999988775 578888632 1122234456699999999999999999999999988899999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 154 ~~~~~~~P~~ai~Dp~l~~~lP~~~~aatg~Dal~ha~E~~~s~-------------------~~--------------- 199 (374)
T cd08183 154 LRHPRMLPDVAIVDPELTLSCPRSVTAASGLDALTQLLEPYLSP-------------------RA--------------- 199 (374)
T ss_pred eecccccCCEEEEChHHhcCCChhhHHHHHHHHHHHHHHHHHcC-------------------CC---------------
Confidence 99999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 200 -------------------------------------------------------------------------------- 199 (374)
T cd08183 200 -------------------------------------------------------------------------------- 199 (374)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 200 -------------------------------------------------------------------------------- 199 (374)
T cd08183 200 -------------------------------------------------------------------------------- 199 (374)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
||+++.+|+++++++.++++++++|+.|+++|++|+|||
T Consensus 200 -----------------------------------------~p~sd~~a~~ai~~i~~~l~~a~~~~~~~~ar~~~~~as 238 (374)
T cd08183 200 -----------------------------------------NPLTDALCRSGLPRGARALRRACENGEDAAARDDMALAS 238 (374)
T ss_pred -----------------------------------------ChHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445566666666666666667777788999999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHH---------HH
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEA---------AE 578 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~i---------a~ 578 (660)
++||++|+++|+|++|+|+|+||++| ++|||+++++++|+||+||.+..++++.++ ++
T Consensus 239 ~laG~a~~~~g~g~~Hai~h~lg~~~-------------~i~HG~a~ai~lp~vl~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (374)
T cd08183 239 LLGGIALANAGLGAVHGLAGPIGGLF-------------DAPHGAICATLLPPVLAANIRALRQRGPGNPALAAYREVAG 305 (374)
T ss_pred HHHHHHHhhhhhHHHHHhhchhhcCC-------------CCChHHHHHHHHHHHHHHhhhhCchhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999974 799999999999999999999999876544 44
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 579 LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 579 ~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
.+|. +.++.+..+++++++|++++|+| +|+|+|+++++++.+++.++.+ ....+||+++|+|++++||+
T Consensus 306 ~~~~-----~~~~~a~~~~~~l~~l~~~lglP-~L~e~gv~~~~~~~ia~~a~~~-~~~~~~p~~~t~~~i~~i~~ 374 (374)
T cd08183 306 LLTG-----NLEAAADDLVEWLEHWVDELGLP-RLSDYGLTPDDLDAVVEAAAGS-SSMKGNPVPLSDAELLEILE 374 (374)
T ss_pred HhCC-----ChHHHHHHHHHHHHHHHHHcCCC-ChhhcCCCHHHHHHHHHHHHhC-ccccCCCCCCCHHHHHHHhC
Confidence 4443 34566778899999999999999 9999999999999999999754 45678999999999999985
|
Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria. |
| >cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=547.16 Aligned_cols=376 Identities=22% Similarity=0.316 Sum_probs=332.3
Q ss_pred eeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcccc-ccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLS-KLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 22 ~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~-~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
|.|.. |++|+||.|++++++++++++| +|++||+|+... ..+..+++.+.|++.|+++.+|+++++||+.+.|++++
T Consensus 2 ~~~~~-p~~i~~G~g~~~~l~~~~~~~~-~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~ 79 (382)
T cd08187 2 FTFYN-PTKIIFGKGTESELGKELKKYG-KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGI 79 (382)
T ss_pred CeecC-CCEEEECCCHHHHHHHHHHHhC-CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHH
Confidence 45655 5999999999999999999996 999999998654 45677999999999999999999999999999999999
Q ss_pred HHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 101 KFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 101 ~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
+.++++++|+||||||||+||+||+++..+.++ .+++||...+ +...+.+|+|+||||+|||||+|+++|++++
T Consensus 80 ~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~-~~~~~~~~~~-----~~~~~~~P~iaIPTTagTGsE~t~~avi~~~ 153 (382)
T cd08187 80 ELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYD-GDVWDFFTGK-----AKIEKALPVGTVLTLAATGSEMNGGAVITNE 153 (382)
T ss_pred HHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCC-CCHHHHhccc-----CCCCCCCCEEEEeCCCchhhccCCCEEEecc
Confidence 999999999999999999999999999988764 6788886421 2334568999999999999999999999998
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
+.+.|.++.++.++|+.+|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 154 ~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~aatg~Dal~h~~E~~~s~-------------------~--------- 205 (382)
T cd08187 154 ETKEKLGFGSPLLRPKFSILDPELTYTLPKYQTANGIVDIFSHVMEQYFTY-------------------P--------- 205 (382)
T ss_pred ccCccccccCCCcCceEEEEChHHhccCCHHHHHHHHHHHHHHHHHHHhCC-------------------C---------
Confidence 888899999999999999999999999999999999999999999999872 1
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (382)
T cd08187 206 -------------------------------------------------------------------------------- 205 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (382)
T cd08187 206 -------------------------------------------------------------------------------- 205 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
..+|+++.+|+++++++.++++++++|+.|.++|
T Consensus 206 ----------------------------------------------~~~~~~~~~a~~a~~li~~~l~~a~~~~~~~~ar 239 (382)
T cd08187 206 ----------------------------------------------VDADLQDRLAEGLLKTVIENGPKALKNPEDYEAR 239 (382)
T ss_pred ----------------------------------------------CCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 1245666777777778888888888888899999
Q ss_pred HHHHHHHHHHhHhhhcccc---hhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHH
Q psy2427 501 SHMHLASAMAGVGFGNAGV---HLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAA 577 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~---~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia 577 (660)
++|++|++++|+++.+.|. +++|+|+|+|++.| +++||+++++++|+||+||.+..++|+++++
T Consensus 240 ~~l~~as~lag~a~~~~g~~~~~~~Hal~~~l~~~~-------------~i~HG~~~ai~lp~v~~~n~~~~~~~~~~la 306 (382)
T cd08187 240 ANIMWAATLALNGLIGVGRPQDWATHMIEHELSALY-------------DIAHGAGLAIVTPAWMRYVYKEKPAKFAQFA 306 (382)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcccchhccHhhcCc-------------CCCcHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 9999999999999988765 68999999999874 7999999999999999999999999999999
Q ss_pred H-HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 578 E-LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 578 ~-~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
+ ++|... +.++++.+..+++++++|++++|+|++|+|+|+++++++++++.++.+. ...+||+++|++++++||+
T Consensus 307 ~~~~g~~~-~~~~~~~~~~~~~~i~~l~~~lglP~~L~~~gv~~~~l~~~a~~a~~~~-~~~~nP~~~t~~~i~~i~~ 382 (382)
T cd08187 307 KRVWGIEP-EGDDEETALEGIEATEEFFKSLGLPTTLSELGIGEEDIDEMAEKATANG-GLGGGFKKLTKEDIREILK 382 (382)
T ss_pred HHHcCCCC-CCCHHHHHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHHHhcC-cccCCCCCCCHHHHHHHhC
Confidence 7 677654 3456677888899999999999999999999999999999999998654 4456899999999999984
|
The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases. |
| >cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-64 Score=547.70 Aligned_cols=374 Identities=30% Similarity=0.456 Sum_probs=323.1
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++..+. +.+|++||+|+++.+.++.+++.+.|++.|+++.+|++++++|+.+.|+++++.+++.+
T Consensus 1 p~~I~fG~g~~~~l~~~~~--~~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~ 78 (398)
T cd08178 1 PPKIYFERGSLPYALLDLK--GKKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFK 78 (398)
T ss_pred CCeEEECcCHHHHHHHHhc--CCCeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcC
Confidence 5799999999999995443 55899999999988888889999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCC-----CCCCCCCcEEEEcCCCCcCccccCceEEeeCCC
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGK-----PVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPL 182 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~-----~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~ 182 (660)
+|+||||||||++|+||++|..+.++..++++++....+.++ +...+.+|+|+||||+|||||+|+++|+++.+.
T Consensus 79 ~D~IIaiGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~I~VPTTagTGSE~t~~avi~~~~~ 158 (398)
T cd08178 79 PDTIIALGGGSPMDAAKIMWLFYEHPEVDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTSGTGSEVTPFAVITDEKT 158 (398)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHhCCCcchhHhhhhhcccccccccccccCCCCCEEEeCCCCcccccccCeEEEEecCC
Confidence 999999999999999999999888776666654211111111 111256899999999999999999999999888
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARF 262 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ 262 (660)
+.|.++.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 159 ~~K~~~~~~~~~P~~~i~Dp~l~~tlP~~~~aatg~Dal~haiE~~~s~-------------------~~---------- 209 (398)
T cd08178 159 GVKYPLADYALTPDMAIVDPELVMTMPKSLTADTGIDALTHALEAYVSV-------------------MA---------- 209 (398)
T ss_pred CeeEEeeCccccCCEEEECcHhhcCCCHHHHHHHHHHHHHHHHHHhhcC-------------------CC----------
Confidence 8999999999999999999999999999999999999999999999872 22
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhH
Q psy2427 263 ALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSA 342 (660)
Q Consensus 263 ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l 342 (660)
T Consensus 210 -------------------------------------------------------------------------------- 209 (398)
T cd08178 210 -------------------------------------------------------------------------------- 209 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccccc
Q psy2427 343 PAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTL 422 (660)
Q Consensus 343 ~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~ 422 (660)
T Consensus 210 -------------------------------------------------------------------------------- 209 (398)
T cd08178 210 -------------------------------------------------------------------------------- 209 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q psy2427 423 SLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSH 502 (660)
Q Consensus 423 ~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~ 502 (660)
+|+++.+|+++++++.++++++++++.|.++|++
T Consensus 210 ----------------------------------------------~~~sd~~a~~a~~~i~~~l~~a~~~~~d~~ar~~ 243 (398)
T cd08178 210 ----------------------------------------------SDFTDGLALQAIKLIFEYLPRSYKNGADPEAREK 243 (398)
T ss_pred ----------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3455566666666666667777777788999999
Q ss_pred HHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCC-------------
Q psy2427 503 MHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASS------------- 569 (660)
Q Consensus 503 ~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~------------- 569 (660)
|+|||++||+++++++++++|+|+|+|++.| +++||+++++++|+||+||.+.+
T Consensus 244 ~~~as~laG~a~~~~~lg~~Hal~h~l~~~~-------------~i~HG~a~ai~lp~vl~~~~~~~~~~~~~~~~~~~~ 310 (398)
T cd08178 244 MHNAATIAGMAFANAFLGICHSMAHKLGAEF-------------HIPHGLANAILLPHVIRYNATDPPVKQAAFPQYKYP 310 (398)
T ss_pred HHHHHHHHHHHhcccchhhhhhhhhhhccCC-------------CCChHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 9999999999999999999999999999974 79999999999999999998765
Q ss_pred --HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcH----HHHHHhhccCCCCCCCCCcc
Q psy2427 570 --PERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADI----PALVTGTLPQHRITKLAPRE 643 (660)
Q Consensus 570 --~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i----~~ia~~a~~~~~~~~~~P~~ 643 (660)
++||+++++.||... .++.+.+..+++++++|++++|+|++|+|+|++++++ +.+++.++.+ ....+||++
T Consensus 311 ~~~~~~~~la~~lg~~~--~~~~~~~~~~~~~i~~l~~~lglp~~L~~~gv~~~~~~~~~~~~a~~a~~~-~~~~~nP~~ 387 (398)
T cd08178 311 KAKERYAEIARFLGLPG--KTDEEKVESLIKAIEELKKKLGIPKSIKDAGVDEEDFLAKVDELAELAFDD-QCTGANPRY 387 (398)
T ss_pred chHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHhhHHHHHHHHHhC-cCCCCCCCC
Confidence 689999999999753 2455677888999999999999999999999998765 9999999854 345679999
Q ss_pred CCHHHHHHHHH
Q psy2427 644 QSEEDLANLFE 654 (660)
Q Consensus 644 ~t~e~i~~il~ 654 (660)
+|++|+++||+
T Consensus 388 ~~~~~i~~i~~ 398 (398)
T cd08178 388 PLISELKQLLL 398 (398)
T ss_pred CCHHHHHHHhC
Confidence 99999999984
|
Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi |
| >cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=544.33 Aligned_cols=365 Identities=30% Similarity=0.416 Sum_probs=320.8
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||||+++. ..+.+.+.|++.++++.+|++++++|+.++|+++++.+++++
T Consensus 1 P~~i~~G~g~l~~l~~~~~~~g~~~~livtd~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 77 (367)
T cd08182 1 PVRIIFGRGAIAKLPSLLKGLGGKRVLLVTGPRSA---IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFG 77 (367)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCCeEEEEeCchHH---HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcC
Confidence 58999999999999999999998999999999886 347889999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++..+.+++. .++++. ..+...+...+.+|+|+||||+|||||+|+++|+++.+++.|.+
T Consensus 78 ~D~IIavGGGs~~D~aK~ia~~~~~~~~-~~~~~~-~~~~~~~~~~~~~p~i~VPTtagtgse~t~~avi~~~~~~~K~~ 155 (367)
T cd08182 78 PDAVLAVGGGSVLDTAKALAALLGAPRE-ALEDLR-IRNKERENRERALPLIAIPTTAGTGSEVTPFATVWDGKKGIKYS 155 (367)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHhCCCc-HHHHHH-HhccCCCCCCCCCCEEEeCCCCCchhhhCCEEEEEECCCCeeee
Confidence 9999999999999999999999887643 444421 00112233445699999999999999999999999988899999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++..+|+.+|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 156 ~~~~~~~P~~~i~Dp~l~~t~P~~~~a~~~~Dal~h~~E~~~s~-------------------~~--------------- 201 (367)
T cd08182 156 LAGPALYPDTAIVDPELTLSLPPYQTASTGLDALAHAIESYWSK-------------------NS--------------- 201 (367)
T ss_pred ecCCcccCCEEEEChHHhcCCCHHHHHHHHHHHHHHHHHHHHHc-------------------CC---------------
Confidence 99999999999999999999999999999999999999999872 22
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 202 -------------------------------------------------------------------------------- 201 (367)
T cd08182 202 -------------------------------------------------------------------------------- 201 (367)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 202 -------------------------------------------------------------------------------- 201 (367)
T cd08182 202 -------------------------------------------------------------------------------- 201 (367)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
+|+++.+|+++++++.++++++++|+.|.++|++|+||+
T Consensus 202 -----------------------------------------~~~td~~a~~a~~~i~~~l~~a~~~~~~~~ar~~l~~as 240 (367)
T cd08182 202 -----------------------------------------TPESRAYARRAIRLILENLPPLLDEPGNLEARAKMAEAS 240 (367)
T ss_pred -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345556666666666667777777788899999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHH--HHHHhCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIE--AAELLGADVS 585 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~--ia~~lg~~~~ 585 (660)
++||++++++|++++|+|+|+|++.+ +++||+++|+++|++++||.+..++|+++ ++++||.+
T Consensus 241 ~laG~a~~~~~~g~~H~l~h~l~~~~-------------~i~HG~~~a~~lp~v~~~~~~~~~~~~~~~~i~~~~~~~-- 305 (367)
T cd08182 241 LLAGLAISNTRTTAAHAISYPLTSRY-------------GVPHGLACALTLPALLRINLEALPEDLALEAILAAFGAP-- 305 (367)
T ss_pred HHHHHHHhchhHHHHHHHhchhhcCC-------------CCChHHHHHHHHHHHHHHhhhhChHhhhhHHHHHHhCcc--
Confidence 99999999999999999999999874 79999999999999999999999999999 99999863
Q ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 586 RVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 586 ~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+ ....+||+++|+|++++||+
T Consensus 306 ------~~~~~~~~i~~l~~~~glp~~L~e~gv~~~~~~~~a~~a~~~-~~~~~~p~~~t~e~i~~i~~ 367 (367)
T cd08182 306 ------SAAEAAARIEALLKELGLPTRLAEYIVTREDIARLVAEAFTP-ERLDNNPVDLDEADLERLLE 367 (367)
T ss_pred ------cHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhc-ccccCCCCCCCHHHHHHHhC
Confidence 234568999999999999999999999999999999999854 33568999999999999985
|
Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria. |
| >PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-65 Score=548.76 Aligned_cols=366 Identities=37% Similarity=0.565 Sum_probs=316.1
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++| |++||||+.+.+.+..+++.+.|++.++++.+|+++.++|+.+.|+++++.+++++
T Consensus 1 P~~i~~G~g~l~~l~~~l~~~g--r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 78 (366)
T PF00465_consen 1 PTKIIFGRGALEELGEELKRLG--RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFG 78 (366)
T ss_dssp ESEEEESTTGGGGHHHHHHCTT--EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTT
T ss_pred CCcEEEccCHHHHHHHHHHhcC--CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcC
Confidence 6899999999999999999997 99999999877777889999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||+||+||+++..+.++ .+++||. +.......+.+|+|+||||+|||||+|+++++++++++.|.+
T Consensus 79 ~D~IIaiGGGS~~D~aK~va~~~~~~-~~~~~~~----~~~~~~~~~~~p~i~IPTt~gtGsE~t~~avi~d~~~~~k~~ 153 (366)
T PF00465_consen 79 ADCIIAIGGGSVMDAAKAVALLLANP-GDLRDLL----GKGPPPTKPALPLIAIPTTAGTGSEVTPYAVIYDEEGGRKLS 153 (366)
T ss_dssp SSEEEEEESHHHHHHHHHHHHHHTSS-SCGGGGG----CECSCCSS--SEEEEEESSSSSSGCCSSEEEEEETTTTEEEE
T ss_pred CCEEEEcCCCCcCcHHHHHHhhccCC-CcHHHHH----hhccccccCCCcEEEeeCCccccccccccccccccccceecc
Confidence 99999999999999999999999876 5588886 234455666799999999999999999999999998899999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++.++|+.+|+||+++.++|++++++|++|+|+|++|+|++ ...+|+++.
T Consensus 154 ~~~~~~~P~~~i~Dp~l~~~lP~~~~~~~~~dal~haiE~~~s-------------------~~~~~~s~~--------- 205 (366)
T PF00465_consen 154 IRSPKLYPDAAILDPELTATLPPRLTASGGLDALAHAIEAYLS-------------------PKANPLSDA--------- 205 (366)
T ss_dssp EEEGGGS-SEEEEEGGGGTTS-HHHHHHHHHHHHHHHHHHHHS-------------------TTT-HHHHH---------
T ss_pred ccCcccCcceeEecHHhhcCCCHHHHhhhHHHHHHHHHHHHhh-------------------cccCcccHH---------
Confidence 9999999999999999999999999999999999999999998 234554444
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (366)
T PF00465_consen 206 -------------------------------------------------------------------------------- 205 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (366)
T PF00465_consen 206 -------------------------------------------------------------------------------- 205 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
++.++++++.++++.++.|+.|.++|++|++|+
T Consensus 206 -----------------------------------------------~a~~ai~li~~~l~~~~~~~~~~~ar~~l~~as 238 (366)
T PF00465_consen 206 -----------------------------------------------LALQAIRLIFENLPRAVADPEDLEARENLALAS 238 (366)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 445555555555555555667788999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++++++|++++|+|+|.|+..+ +++||.++++++|++++|+.+.+++++.++++.||.+....
T Consensus 239 ~laG~a~~~~~~g~~Hal~~~l~~~~-------------~v~HG~~~a~~lp~v~~~~~~~~~~~~~~l~~~l~~~~~~~ 305 (366)
T PF00465_consen 239 TLAGLAISNAGTGAAHALSHALGARY-------------GVPHGEAVAILLPHVLRFNAPSAPEKLARLAKALGVDTEGG 305 (366)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHHHH-------------TS-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTHCTTS-
T ss_pred hhccccccccccccccccccccccce-------------eecchhhhhcccHHHHHHHHHhhHHHHHHHHHhcCCCccCC
Confidence 99999999999999999999999874 79999999999999999999999999999999999886666
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDL 649 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i 649 (660)
+.++.++.+++++++|++++|+|++|+|+|+++++++++++.++.... ..+||+++|+|||
T Consensus 306 ~~~~~a~~~~~~l~~l~~~lglp~~l~~~gi~~~~l~~ia~~a~~~~~-~~~~P~~l~~e~i 366 (366)
T PF00465_consen 306 SAEEAADDAIDELRALLRSLGLPTRLSDLGIDEEDLDEIAEAALADQR-MKNNPRPLTREDI 366 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--SSGGGGT-TGGGHHHHHHHHTCTGG-GGGSSS---HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCHHHcCCCHHHHHHHHHHHHhCcc-ccCCCCCCCHHhC
Confidence 778889999999999999999999999999999999999999996644 7899999999986
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A .... |
| >cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=539.25 Aligned_cols=366 Identities=27% Similarity=0.403 Sum_probs=316.2
Q ss_pred EEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHH
Q psy2427 24 FEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKF 102 (660)
Q Consensus 24 ~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~ 102 (660)
|.. |++|+||.|+++++++. +.+|++||+|++. ...++.+++.+.|++.|+++.+|+++++||+.+.|+++++.
T Consensus 2 ~~~-p~~i~~G~g~l~~l~~~----~~~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~ 76 (375)
T cd08179 2 FTL-PRDIYFGKGSLEYLKTL----KGKKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEA 76 (375)
T ss_pred ccC-CceEEECcCHHHHHHHh----cCCeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHH
Confidence 444 58999999999998653 3489999999874 45678899999999999999999999999999999999999
Q ss_pred hHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCC
Q psy2427 103 VRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPL 182 (660)
Q Consensus 103 ~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~ 182 (660)
++++++|+||||||||+||+||++|..+.+++.+.+++... ...+...+.+|+|+||||+|||||+|+++|+++++.
T Consensus 77 ~~~~~~D~IIavGGGSviD~AK~ia~~~~~~~~~~~~~~~~---~~~~~~~~~~p~iaIPTtagTGSE~t~~avi~~~~~ 153 (375)
T cd08179 77 MREFEPDWIIALGGGSPIDAAKAMWIFYEYPELTFEDIVKP---FTLPELRNKARFCAIPSTSGTATEVTAFSVITDYEK 153 (375)
T ss_pred HHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCcCHHHHhcc---ccccccCCCCCEEEeCCCCchhHhhCCeEEEEeCCC
Confidence 99999999999999999999999999888776667776421 111112345899999999999999999999999888
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARF 262 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ 262 (660)
+.|.++.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 154 ~~K~~~~~~~~~P~~ai~Dp~l~~~~P~~~~a~tg~Dal~ha~E~y~s~-------------------~----------- 203 (375)
T cd08179 154 GIKYPLADFEITPDVAIVDPELTETMPPKLTAETGMDALTHAIEAYVST-------------------A----------- 203 (375)
T ss_pred CeEEEecCCcccCCEEEEChhhhcCCCHHHHHHHHHHHHHHHHHHHHhc-------------------C-----------
Confidence 8999999999999999999999999999999999999999999999872 2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhH
Q psy2427 263 ALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSA 342 (660)
Q Consensus 263 ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l 342 (660)
T Consensus 204 -------------------------------------------------------------------------------- 203 (375)
T cd08179 204 -------------------------------------------------------------------------------- 203 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccccc
Q psy2427 343 PAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTL 422 (660)
Q Consensus 343 ~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~ 422 (660)
T Consensus 204 -------------------------------------------------------------------------------- 203 (375)
T cd08179 204 -------------------------------------------------------------------------------- 203 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q psy2427 423 SLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSH 502 (660)
Q Consensus 423 ~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~ 502 (660)
.+|+++.+|+++++++.++++++++|+ |.++|++
T Consensus 204 ---------------------------------------------~~~~s~~~a~~ai~~i~~~l~~a~~~~-d~~ar~~ 237 (375)
T cd08179 204 ---------------------------------------------ANDFTDPLALHAIEMIFENLPKSYEGD-DKEAREK 237 (375)
T ss_pred ---------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHH
Confidence 234556666667777777777777788 9999999
Q ss_pred HHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCH--HHHHHHHHHh
Q psy2427 503 MHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSP--ERHIEAAELL 580 (660)
Q Consensus 503 ~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~--~~~~~ia~~l 580 (660)
|+||+++||++|+++|+|.+|+|+|+|++.+ +++||+++++++|+|++||.+..+ +++.++++.+
T Consensus 238 l~~as~laG~a~~~~g~g~~Hai~h~lg~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~~~~~~~~i~~~~ 304 (375)
T cd08179 238 MHNAQCMAGMAFSNALLGIVHSMAHKTGAEF-------------GVPHGLANAIYLPYVIQFNSKDAEAKKRYAGLAKEE 304 (375)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhhhhhccCC-------------CCChHHHHHHHHHHHHHHhcccCccHHHHHHHHHHh
Confidence 9999999999999999999999999999874 799999999999999999998875 5777777654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCc----HHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHH
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSAD----IPALVTGTLPQHRITKLAPREQSEEDLANLFENS 656 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~----i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a 656 (660)
.++.+++++++|++++|+|++|+|+|+++++ ++.+++.++.+.. ..+||+++|++++++||+++
T Consensus 305 -----------~~~~~~~~i~~l~~~lglp~~L~~~gi~~~~~~~~~~~~a~~a~~~~~-~~~~p~~~t~~~i~~il~~~ 372 (375)
T cd08179 305 -----------GVEDLIEAVRELNKKLGIPACFKEYGIDEQEFLEKLDELAENAIKDAC-TGTNPRQPTKEEMKKLLKCV 372 (375)
T ss_pred -----------hHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHhhHHHHHHHHHhCcC-CCCCCCCCCHHHHHHHHHHH
Confidence 2345689999999999999999999999865 6899999885434 45799999999999999999
Q ss_pred hh
Q psy2427 657 MS 658 (660)
Q Consensus 657 ~~ 658 (660)
|.
T Consensus 373 ~~ 374 (375)
T cd08179 373 YY 374 (375)
T ss_pred hc
Confidence 84
|
NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold. |
| >cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-63 Score=532.94 Aligned_cols=370 Identities=35% Similarity=0.545 Sum_probs=328.8
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||+|+++.+.+..+++.+.|++.|+++.+|++++++|+.+.|+++++.+++++
T Consensus 1 P~~i~~G~g~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 80 (370)
T cd08551 1 PTRIIFGAGAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEG 80 (370)
T ss_pred CCeEEECcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcC
Confidence 58999999999999999999998999999999987767789999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||++|..+.++ .+.|++... .+...+.+|+|+||||+|||||+|+++++++++.+.|.+
T Consensus 81 ~d~IiaiGGGs~~D~AK~va~~~~~~-~~~~~~~~~-----~~~~~~~~p~i~VPTt~gtgse~t~~avi~d~~~~~K~~ 154 (370)
T cd08551 81 CDGVIAVGGGSVLDTAKAIALLATNP-GDIWDYEGG-----KPVIKPALPLIAIPTTAGTGSEVTPFAVITDEETGEKYG 154 (370)
T ss_pred CCEEEEeCCchHHHHHHHHHHHHhCC-CcHHHHhCc-----ccccCCCCCEEEecCCCcchhhcCCeEEEEECCCCeeEE
Confidence 99999999999999999999988765 567777431 223445699999999999999999999999988789999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..+
T Consensus 155 ~~~~~~~P~~~i~Dp~l~~~~P~~~~~a~~~Dal~h~~E~~~s~-------------------~~~-------------- 201 (370)
T cd08551 155 IASPELLPDVAILDPELTYTLPPALTAATGMDALTHAIEAYVSR-------------------KAN-------------- 201 (370)
T ss_pred EeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CCC--------------
Confidence 99999999999999999999999999999999999999999872 223
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 202 -------------------------------------------------------------------------------- 201 (370)
T cd08551 202 -------------------------------------------------------------------------------- 201 (370)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 202 -------------------------------------------------------------------------------- 201 (370)
T cd08551 202 -------------------------------------------------------------------------------- 201 (370)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
|+++.+|+++++++.+++++++.|+.|.++|++|+||+
T Consensus 202 ------------------------------------------~~s~~~a~~~~~~~~~~l~~~~~~~~~~~ar~~l~~as 239 (370)
T cd08551 202 ------------------------------------------PISDALAIKAIRLIAKNLPKAVKEGGDLEAREKMALAS 239 (370)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44556666667777777777777788899999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++++++|+|++|+|+|.|++.+ +++||+++|+++|++++||.+..++|+.++++.++.. .+.
T Consensus 240 ~laG~a~~~~~~g~~H~i~~~l~~~~-------------~i~HG~~~ai~lp~~l~~~~~~~~~~~~~l~~~~~~~-~~~ 305 (370)
T cd08551 240 TLAGMAFSNAGLGAVHAMAHPLGALY-------------HIPHGLANAILLPHVMRFNAEAIPEKYADIARAMGKV-SGG 305 (370)
T ss_pred HHHHHHHhCcchHHHHHHhhHHhhCC-------------CCcHHHHHHHHHHHHHHhccccCHHHHHHHHHHhCCc-CCC
Confidence 99999999999999999999999864 7999999999999999999999999999999988732 233
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il 653 (660)
+.++.+..+++++++|++++|+|++|+|+|+++++++.+++.++.+.. ..+||+++|++++++||
T Consensus 306 ~~~~~~~~~~~~l~~~~~~lglp~~L~e~gi~~~~~~~ia~~a~~~~~-~~~~p~~~~~~~i~~il 370 (370)
T cd08551 306 SDDEAANAAIAAIRKLNKELGIPTSLADLGVKEEDIDKLAELAMEDAC-LLNNPRIITREDIREIY 370 (370)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhccc-CCCCCCCCCHHHHHHhC
Confidence 455667788999999999999999999999999999999999986544 34689999999999986
|
Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H. |
| >cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-63 Score=530.85 Aligned_cols=353 Identities=27% Similarity=0.471 Sum_probs=307.8
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
|++|+||.|++++++++++++| +|++||+|+.+ .+.+.++++.+.|++.|+++.+|++++++|+.+.|+++++.++++
T Consensus 4 p~~i~~G~g~l~~l~~~~~~~g-~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~ 82 (357)
T cd08181 4 PTKVYFGENCVEKHGEELAALG-KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKF 82 (357)
T ss_pred CCeEEECCCHHHHHHHHHHHcC-CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhc
Confidence 5899999999999999999998 99999999987 446777999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCcee
Q psy2427 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKT 186 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~ 186 (660)
++|+||||||||++|+||+++..+.++ .+.+|++. .....+.+|+|+||||+|||||+|+++|+++++.+.|.
T Consensus 83 ~~D~IIavGGGSviD~aK~ia~~~~~~-~~~~~~~~------~~~~~~~~P~i~VPTtagTGsE~t~~avi~d~~~~~K~ 155 (357)
T cd08181 83 NADFVIGIGGGSPLDAAKAIAVLIKNP-DLKVELYF------RSKYLKALPVVAIPTTAGTGSEVTQYSVLTDHEEGTKK 155 (357)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHhCC-CcHHHHhc------ccccCCCCCEEEEeCCCcchhhhCCeEEEEECCCCeee
Confidence 999999999999999999999988776 56777642 12234559999999999999999999999998889999
Q ss_pred eeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2427 187 GIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266 (660)
Q Consensus 187 ~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~ 266 (660)
++.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++ ...|
T Consensus 156 ~i~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~ha~E~~~s-------------------~~~~------------- 203 (357)
T cd08181 156 GFGHDLIFPKLAFLDPKYTLTLPKEVTINTALDALSHAVEGYLS-------------------NKST------------- 203 (357)
T ss_pred eccCCccccCEEEEChHHhcCCCHHHHHHHHHHHHHHHHHHHHc-------------------CCCC-------------
Confidence 99999999999999999999999999999999999999999987 2334
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHH
Q psy2427 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346 (660)
Q Consensus 267 i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l 346 (660)
T Consensus 204 -------------------------------------------------------------------------------- 203 (357)
T cd08181 204 -------------------------------------------------------------------------------- 203 (357)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCc
Q psy2427 347 NFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 426 (660)
Q Consensus 347 ~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~ 426 (660)
T Consensus 204 -------------------------------------------------------------------------------- 203 (357)
T cd08181 204 -------------------------------------------------------------------------------- 203 (357)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2427 427 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLA 506 (660)
Q Consensus 427 ~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~a 506 (660)
|++|.+|+++++++.++++++++|+.|.++|++|+||
T Consensus 204 -------------------------------------------~~~d~~a~~ai~l~~~~l~~~~~~~~~~~ar~~~~~a 240 (357)
T cd08181 204 -------------------------------------------PYSDMLAKEALELFKECLPKLLENELDEEAREKLMLA 240 (357)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4455555555666666666666677889999999999
Q ss_pred HHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCC
Q psy2427 507 SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSR 586 (660)
Q Consensus 507 s~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~ 586 (660)
+++||++|+++|++.+|+|+|+||++| +++||+++++++|+||+||.+..++|| ++++.+|.+
T Consensus 241 s~laG~a~~~~g~~~~Hal~~~l~~~~-------------~~~HG~~~ai~lp~vl~~~~~~~~~~~-~~~~~~g~~--- 303 (357)
T cd08181 241 STLAGMVIAQTGTTLPHGLGYPLTYEK-------------GIPHGLANGIFLPEYLELAKEQIPEKV-FILKLLGFG--- 303 (357)
T ss_pred HHHHHHHHhcccchhhHhhcCccccCC-------------CCCcHHHHHHHHHHHHHHHhhcCHHHH-HHHHHcCcH---
Confidence 999999999999999999999999864 799999999999999999999999999 999999852
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 587 VKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 587 ~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
.+++|+++++.|.+|.+ |+++++++.+++.++.+. ...+||+++|+|++++||+
T Consensus 304 ------------~~~~~~~~~~~~~~l~~-gv~~~~~~~~a~~~~~~~-~~~~nP~~~t~~~i~~il~ 357 (357)
T cd08181 304 ------------SLDEFLKSLGLLLKVVI-KLSDEEIEKWAERALSAK-HKANTPGEVTEEDIRNIYK 357 (357)
T ss_pred ------------HHHHHHHHHhHHhCCCC-CCCHHHHHHHHHHHHhCc-CcCCCCCCCCHHHHHHHhC
Confidence 23345555555555555 999999999999998543 3467999999999999985
|
1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion. |
| >TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-62 Score=524.77 Aligned_cols=348 Identities=27% Similarity=0.345 Sum_probs=305.0
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|+++++++++. .+|++||+|+.+.+.+..+++.+.|++. .+.+|+++++||+.++|+++++.+++++
T Consensus 4 p~~I~~G~g~~~~l~~~~~---~~r~lvVtd~~~~~~g~~~~v~~~L~~~--~~~~~~~v~~~pt~~~v~~~~~~~~~~~ 78 (355)
T TIGR03405 4 PVRIHFGAGSLALAPQLLH---GRRVVVVTFPEARALGLARRLEALLGGR--LAALIDDVAPNPDVAQLDGLYARLWGDE 78 (355)
T ss_pred CCeEEECCCHHHHHHHHhC---CCeEEEEECcchhhcchHHHHHHHhccC--cEEEeCCCCCCcCHHHHHHHHHHHHhcC
Confidence 5899999999999999763 3899999999988888889999999753 5778999999999999999999999988
Q ss_pred --CCEEEEecCchhhhHHHHHHhHhcCCC-cchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCc
Q psy2427 108 --CDAFIAVGGGSVIDTCKAANLYYCDPE-AEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKA 184 (660)
Q Consensus 108 --~D~IIavGGGsviD~AK~~a~~~~~~~-~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~ 184 (660)
+|+||||||||++|+||+++..+.+++ .++|||+.. + ..+...+.+|+|+||||+|||||+|+++|+++++.+.
T Consensus 79 ~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~--~-~~~~~~~~~P~IaVPTTagTGSE~t~~avi~d~~~~~ 155 (355)
T TIGR03405 79 GACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRN--G-RDFAPTARLPLVAIPTTAGTGSEVTPWATVWDAENSK 155 (355)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHHHhc--C-CccCCCCCCCEEEEcCCCcchhhhcCeEEEEeCCCCe
Confidence 999999999999999999999887654 467888632 1 1123445699999999999999999999999998899
Q ss_pred eeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy2427 185 KTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFAL 264 (660)
Q Consensus 185 K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai 264 (660)
|.++.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. ..+
T Consensus 156 K~~~~~~~~~P~~ailDp~l~~t~P~~~~a~tg~Dal~haiE~~~s~-------------------~~~----------- 205 (355)
T TIGR03405 156 KYSLHLPFTYPEAAIVDAALMLSLPREHTLSTGLDALSHALESIWNV-------------------NAN----------- 205 (355)
T ss_pred eEEeccCCccCCEEEEChHHHcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CCC-----------
Confidence 99999999999999999999999999999999999999999999872 233
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHH
Q psy2427 265 QTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPA 344 (660)
Q Consensus 265 ~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~ 344 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (355)
T TIGR03405 206 -------------------------------------------------------------------------------- 205 (355)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCC
Q psy2427 345 VFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 424 (660)
Q Consensus 345 ~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~ 424 (660)
T Consensus 206 -------------------------------------------------------------------------------- 205 (355)
T TIGR03405 206 -------------------------------------------------------------------------------- 205 (355)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy2427 425 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMH 504 (660)
Q Consensus 425 P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~ 504 (660)
|++|.+|+++++++.++++++++|++|+++|++|+
T Consensus 206 ---------------------------------------------p~sd~~a~~a~~li~~~L~~~~~~~~d~~aR~~~~ 240 (355)
T TIGR03405 206 ---------------------------------------------PVSRGLAIQAAADISRALPEVLAQPGDLALRSDMA 240 (355)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45555566666666666666667788899999999
Q ss_pred HHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCC
Q psy2427 505 LASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 584 (660)
Q Consensus 505 ~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~ 584 (660)
|||++||++|+++|++++|+|+|+|++.+ +++||+++++++|+||+||.+..++|++++++++|..
T Consensus 241 ~as~laG~a~~~~~~g~~Hal~~~l~~~~-------------~i~HG~~~aillp~vl~~n~~~~~~~~~~~~~~~g~~- 306 (355)
T TIGR03405 241 LAALKAGLAFSNTKTALAHSISYEMTLRH-------------GVPHGIACSFTLPTVLRTALGRNPSRDALLQAVFGDT- 306 (355)
T ss_pred HHHHHHHHHHhchhHHHHHHhhchhccCC-------------CCCcHHHHHHHHHHHHHHhhccCHHHHHHHHHHhCcH-
Confidence 99999999999999999999999999863 7999999999999999999999999999999999831
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCc
Q psy2427 585 SRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPR 642 (660)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~ 642 (660)
..+++++++|++++|+|++|+|+|+++++++++++.++.+.+ .+|+|+
T Consensus 307 ---------~~~~~~i~~l~~~lglP~~L~~~gv~~~~~~~~a~~a~~~~~-~~~~~~ 354 (355)
T TIGR03405 307 ---------ASAPARLRAFLDTLGVKTRFADYGVSRDEARRMVGEAFDGAR-GKNFIG 354 (355)
T ss_pred ---------HHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHHhHH-hhcCCC
Confidence 246899999999999999999999999999999999986544 578886
|
2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis. |
| >COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-62 Score=483.30 Aligned_cols=379 Identities=21% Similarity=0.301 Sum_probs=337.4
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcc-ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFL 97 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~-~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~ 97 (660)
|..|.|..| ++|+||+|.+.+|++++.+. +|+||+++.+ +++.+.++++.+.|+ |+++..|.+++|||+++++.
T Consensus 1 M~nF~y~nP-Tki~FGkg~i~~l~~ei~~~--~kVLi~YGGGSIKrnGvydqV~~~Lk--g~~~~E~~GVEPNP~~~Tv~ 75 (384)
T COG1979 1 MNNFTYHNP-TKILFGKGQIAELREEIPKD--AKVLIVYGGGSIKKNGVYDQVVEALK--GIEVIEFGGVEPNPRLETLM 75 (384)
T ss_pred CCCccccCC-ceEEecCchHHHHHhhcccc--CeEEEEecCccccccchHHHHHHHhc--CceEEEecCCCCCchHHHHH
Confidence 567778875 99999999999999999987 7999999875 778889999999998 89999999999999999999
Q ss_pred HHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEE
Q psy2427 98 EATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIF 177 (660)
Q Consensus 98 ~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi 177 (660)
++++.+|++++|+|+|||||||+|.+|++|+-... ++|.||.+.... .....+|+.+|-|.++||||++..+|+
T Consensus 76 kaV~i~kee~idflLAVGGGSViD~tK~IAa~a~y-~GD~Wdi~~~~~-----~i~~alP~g~VLTLpATGSEmn~~aVI 149 (384)
T COG1979 76 KAVEICKEENIDFLLAVGGGSVIDGTKFIAAAAKY-DGDPWDILTKKH-----KIKDALPIGTVLTLPATGSEMNAGAVI 149 (384)
T ss_pred HHHHHHHHcCceEEEEecCcchhhhHHHHHhhccc-CCChHHHHhcCC-----ccccccccceEEEccccccccCCCcee
Confidence 99999999999999999999999999999876644 368999985321 244559999999999999999999999
Q ss_pred eeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q psy2427 178 DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSD 257 (660)
Q Consensus 178 ~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~ 257 (660)
++.+++.|.++.++..+|.++|+||+++.|+|+|+++.|..|+++|-+|.|++.+
T Consensus 150 t~~~t~eK~~~~S~~v~PkFsvLDP~~tyTlP~~Q~a~G~vDa~sHv~EqYft~~------------------------- 204 (384)
T COG1979 150 TNEETKEKLGFGSPLVFPKFSVLDPEVTYTLPKRQTANGVVDAFSHVFEQYFTYP------------------------- 204 (384)
T ss_pred cccccccceeccCcccccceEEeCCcceeecChHHhhhhHHHHHHHHHHHHhcCc-------------------------
Confidence 9999999999999999999999999999999999999999999999999998620
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhH
Q psy2427 258 VWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLS 337 (660)
Q Consensus 258 ~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~a 337 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (384)
T COG1979 205 -------------------------------------------------------------------------------- 204 (384)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccc
Q psy2427 338 VVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLID 417 (660)
Q Consensus 338 vai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d 417 (660)
T Consensus 205 -------------------------------------------------------------------------------- 204 (384)
T COG1979 205 -------------------------------------------------------------------------------- 204 (384)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCH
Q psy2427 418 PLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDL 497 (660)
Q Consensus 418 ~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~ 497 (660)
...+++|++|+..++++.+..|++++||+|+
T Consensus 205 -------------------------------------------------~~a~lQDr~aE~~l~TlIe~gpk~l~~p~nY 235 (384)
T COG1979 205 -------------------------------------------------VNAKLQDRFAEGILRTLIEYGPKLLEDPENY 235 (384)
T ss_pred -------------------------------------------------CCchhhHHHHHHHHHHHHHHhHHHhcCCccH
Confidence 2235678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhccc---chhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHH
Q psy2427 498 EARSHMHLASAMAGVGFGNAG---VHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHI 574 (660)
Q Consensus 498 ~ar~~~~~as~~ag~~~~~~g---~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~ 574 (660)
++|++++|++++|.+++-.+| .|.+|.|+|.||++| +++||.++||++|.||+|..+..+.||.
T Consensus 236 ~~RanlmWaaT~AlNGli~~G~~~DWAtH~i~HelsA~y-------------~i~Ha~~LAIv~P~~m~~~~~~k~~k~~ 302 (384)
T COG1979 236 EARANLMWAATMALNGLIGAGVPQDWATHMIGHELTALY-------------DIDHAQGLAIVLPAWMNYTLDQKRAKLL 302 (384)
T ss_pred HHHHHHHHHHHHHhhchhhcCCCCchhhhhhcchhhhhc-------------CCccccceeEechHHHHHHHhhcHHHHH
Confidence 999999999999998765544 799999999999984 7999999999999999999999999999
Q ss_pred HHH-HHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHH
Q psy2427 575 EAA-ELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653 (660)
Q Consensus 575 ~ia-~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il 653 (660)
+.+ ++||++.. ++++.+.+.|+++++|++++|+|++|+|+|+++++++.+.++........-.+-+.++.+|+++||
T Consensus 303 q~a~rV~gi~~g--~~~e~i~~~I~ktr~ff~slGv~trlsdygi~~e~~~~~~~~l~~~~~~~lG~~~~l~~~dv~~Il 380 (384)
T COG1979 303 QYAERVWGITEG--SDDEIIDEAIAKTREFFESLGVPTRLSDYGIDEEKIPLLLEKLEKHGMGTLGEFGDLNLQDVREIL 380 (384)
T ss_pred HHHHHHcCCCCC--ChHHHHHHHHHHHHHHHHHcCCccchhhcCCChhhhHHHHHHHHhcccccccccccccHHHHHHHH
Confidence 999 59999865 578899999999999999999999999999999998888776433322223466899999999999
Q ss_pred HHHh
Q psy2427 654 ENSM 657 (660)
Q Consensus 654 ~~a~ 657 (660)
+.|+
T Consensus 381 ~~a~ 384 (384)
T COG1979 381 EAAL 384 (384)
T ss_pred HhcC
Confidence 9874
|
|
| >cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=520.74 Aligned_cols=337 Identities=27% Similarity=0.375 Sum_probs=304.0
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||||+++++. ..+++.+.|++.+ +.+|++++++|+.+.|+++++.+++.+
T Consensus 1 p~~i~~G~g~l~~l~~~l~~~g~~~~livt~~~~~~~-~~~~v~~~l~~~~--~~~~~~~~~~p~~~~v~~~~~~~~~~~ 77 (337)
T cd08177 1 PQRVVFGPGALAALAAELERLGASRALVLTTPSLATK-LAERVASALGDRV--AGTFDGAVMHTPVEVTEAAVAAAREAG 77 (337)
T ss_pred CCeEEECCCHHHHHHHHHHHcCCCeEEEEcChHHHHH-HHHHHHHHhccCC--cEEeCCCCCCCCHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999998887 7899999998764 467899999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++..+. +|+|+||||+ ||||+|++++++++ +.|.+
T Consensus 78 ~d~IIaiGGGs~iD~aK~ia~~~~------------------------~p~i~IPTta-tgse~t~~avit~~--g~K~~ 130 (337)
T cd08177 78 ADGIVAIGGGSTIDLAKAIALRTG------------------------LPIIAIPTTL-SGSEMTPIAGVTEN--GVKTT 130 (337)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHhc------------------------CCEEEEcCCc-hhhhhcCeEEEecC--CceeE
Confidence 999999999999999999998763 8999999999 99999999999875 78999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++..+|+.+|+||+++.++|+++++++++|+|+|++|+|++. ..
T Consensus 131 i~~~~~~P~~~i~Dp~l~~~~P~~~~~~~g~Dal~h~iE~~~s~-------------------~~--------------- 176 (337)
T cd08177 131 GRDPEVLPRTVIYDPELTLTTPRRLWLSSGIRAIDHAVEALYAP-------------------DA--------------- 176 (337)
T ss_pred eeCccccCCEEEEChHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CC---------------
Confidence 99999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 177 -------------------------------------------------------------------------------- 176 (337)
T cd08177 177 -------------------------------------------------------------------------------- 176 (337)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 177 -------------------------------------------------------------------------------- 176 (337)
T cd08177 177 -------------------------------------------------------------------------------- 176 (337)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
||+++.+|+++++++.++++++++|+.|+++|++|+|||
T Consensus 177 -----------------------------------------~~~s~~~a~~ai~~i~~~l~~~~~~~~~~~ar~~~~~as 215 (337)
T cd08177 177 -----------------------------------------NPIVDLLAEEGIRALAEALPRIKADPDDLDARLDALYGA 215 (337)
T ss_pred -----------------------------------------ChHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345556666666666666666667788899999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++++++|+|++|+|+|+|++.| ++|||+++++++|+||+||.+..++|++++++.+|.+
T Consensus 216 ~~ag~a~~~~~~g~~H~l~h~l~~~~-------------~~~HG~~~ai~lp~vl~~~~~~~~~~~~~~a~~l~~~---- 278 (337)
T cd08177 216 WLCGTCLGSVGMGLSHKLGHVLGGTF-------------GLPHAETSCIVLPHVLAFNAPAAPEALARLARALGLG---- 278 (337)
T ss_pred HHHHHHhccccHHHHHHhhCccccCc-------------CCCcHHHHHHHHHHHHHhcCcCCHHHHHHHHHHhCcc----
Confidence 99999999999999999999999975 7999999999999999999999999999999999753
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
+..+++++++|++++|+|++|+|+|+++++++.+++.++.+ . ..||+++|++|+++||+
T Consensus 279 -----~~~~~~~i~~l~~~lglp~~l~e~gi~~~~~~~~~~~a~~~-~--~~~p~~~t~~~i~~i~~ 337 (337)
T cd08177 279 -----AADAADALADLARSLGAPTSLADLGVPRDDIDRAAELALAD-P--YANPRPLERDAVRALLE 337 (337)
T ss_pred -----HHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhc-c--ccCCCCCCHHHHHHHhC
Confidence 23458999999999999999999999999999999999854 2 24699999999999985
|
Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p- |
| >PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=563.07 Aligned_cols=380 Identities=28% Similarity=0.440 Sum_probs=331.1
Q ss_pred EEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHH--hCCCeEEEEeCcccCCCHHHHHHHHH
Q psy2427 24 FEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLT--RHGVKFELFDKVRVEPTGDSFLEATK 101 (660)
Q Consensus 24 ~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~--~~gi~~~~~~~~~~~p~~~~v~~~~~ 101 (660)
|.+ |++|+||.|+++++++++. +.+|+|||+|+++.+.++.+++.+.|+ +.++++.+|+++++||+.+.|+++++
T Consensus 457 ~~~-P~~i~~G~g~l~~l~~~l~--~~~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~ 533 (862)
T PRK13805 457 FKV-PKKIYFERGSLPYLLDELD--GKKRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAE 533 (862)
T ss_pred eec-CCeEEECCCHHHHHHHHhc--CCCEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHH
Confidence 454 5899999999999999885 569999999999888878899999999 78999999999999999999999999
Q ss_pred HhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCC-----CCCCCCcEEEEcCCCCcCccccCceE
Q psy2427 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKP-----VTVPLKPLIAIPTTSGTGSETTGVSI 176 (660)
Q Consensus 102 ~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~lP~i~IPTt~gtgse~s~~av 176 (660)
.+++.++|+||||||||++|+||+++..+.+++.+++|+.....+.++. ...+.+|+|+||||+|||||+|+++|
T Consensus 534 ~~~~~~~D~IIaiGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~av 613 (862)
T PRK13805 534 LMRSFKPDTIIALGGGSPMDAAKIMWLFYEHPETDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTSGTGSEVTPFAV 613 (862)
T ss_pred HHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCHHHHHHHhcccccccccccccCCCCcEEEeeCCCCcccccCCeEE
Confidence 9999999999999999999999999999888777777764211111111 11356899999999999999999999
Q ss_pred EeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy2427 177 FDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVS 256 (660)
Q Consensus 177 i~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (660)
+++.+++.|..+.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 614 i~~~~~~~K~~~~~~~~~P~~~ivDp~l~~tlP~~~taa~g~Dal~ha~Eay~s~-------------------~~---- 670 (862)
T PRK13805 614 ITDDKTGVKYPLADYELTPDVAIVDPNLVMTMPKSLTADTGIDALTHALEAYVSV-------------------MA---- 670 (862)
T ss_pred EEecCCCeEEEeeCCCccCCEEEECHHHHccCCHHHHHHHHHHHHHHHHHHHHcc-------------------CC----
Confidence 9998888999999999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
T Consensus 671 -------------------------------------------------------------------------------- 670 (862)
T PRK13805 671 -------------------------------------------------------------------------------- 670 (862)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 416 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~ 416 (660)
T Consensus 671 -------------------------------------------------------------------------------- 670 (862)
T PRK13805 671 -------------------------------------------------------------------------------- 670 (862)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCC-C
Q psy2427 417 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ-D 495 (660)
Q Consensus 417 d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~-~ 495 (660)
+|+++.+|+++++++.++++++++|+ .
T Consensus 671 ----------------------------------------------------~~~sd~~a~~ai~li~~~L~~a~~~~~~ 698 (862)
T PRK13805 671 ----------------------------------------------------SDYTDGLALQAIKLVFEYLPRSYKNGAK 698 (862)
T ss_pred ----------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555666666666666666667777 8
Q ss_pred CHHHHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccC-------
Q psy2427 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAAS------- 568 (660)
Q Consensus 496 ~~~ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~------- 568 (660)
|+++|++|+||+++||++++|+|++++|+|+|+|++.| +++||+++++++|+||+||.+.
T Consensus 699 d~~ar~~m~~As~laG~a~~~~~~g~~Hal~~~lg~~~-------------~v~HG~~~aillP~vl~~n~~~~~~~~~~ 765 (862)
T PRK13805 699 DPEAREKMHNASTIAGMAFANAFLGICHSMAHKLGAEF-------------HIPHGRANAILLPHVIRYNATDPPKQAAF 765 (862)
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhcCc-------------CCChHHHHHHHHHHHHHHhhhcccccccc
Confidence 89999999999999999999999999999999999874 7999999999999999999884
Q ss_pred -------CHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCc----HHHHHHhhccCCCCC
Q psy2427 569 -------SPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSAD----IPALVTGTLPQHRIT 637 (660)
Q Consensus 569 -------~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~----i~~ia~~a~~~~~~~ 637 (660)
.++||++++++||.. +.++++.+..+++++++|++++|+|++|+|+|+++++ ++.+++.++.+. ..
T Consensus 766 ~~~~~~~~~~k~~~la~~l~~~--~~~~~~~a~~~i~~i~~l~~~lglP~~L~~~gv~~~~~~~~l~~~a~~a~~~~-~~ 842 (862)
T PRK13805 766 PQYEYPRADERYAEIARHLGLP--GSTTEEKVESLIKAIEELKAELGIPMSIKEAGVDEADFLAKLDELAELAFDDQ-CT 842 (862)
T ss_pred ccccccccHHHHHHHHHHhCCC--CCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHhhHHHHHHHHHhCc-cc
Confidence 579999999999873 3345677788899999999999999999999999876 699999998553 44
Q ss_pred CCCCccCCHHHHHHHHHHHh
Q psy2427 638 KLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 638 ~~~P~~~t~e~i~~il~~a~ 657 (660)
.+||++++++|+++||+++|
T Consensus 843 ~~np~~~~~~~i~~i~~~~~ 862 (862)
T PRK13805 843 GANPRYPLISELKEILLDAY 862 (862)
T ss_pred cCCCCCCCHHHHHHHHHHhC
Confidence 57999999999999999886
|
|
| >cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=490.50 Aligned_cols=325 Identities=32% Similarity=0.499 Sum_probs=287.1
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|+++++.+ ++.+|++||+|+++.+.++.+++.+.|++. +++.+|+++++||+.+.|+++++.+++++
T Consensus 4 p~~i~~G~g~~~~l~~----~~~~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~ 78 (332)
T cd08180 4 KTKIYFGEDALERLKE----LKNKRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFK 78 (332)
T ss_pred CCeEEECcCHHHHHHH----hCCCeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcC
Confidence 5899999999998744 334899999999998887889999999987 88889999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++....+. ...+.+|+|+||||+|||||+|+++|+++++++.|.+
T Consensus 79 ~d~IiaiGGGs~~D~aKa~a~~~~~~-----------------~~~~~~p~i~VPTtagtgse~t~~avi~~~~~~~k~~ 141 (332)
T cd08180 79 PDIVIALGGGSAIDAAKAIIYFAKKL-----------------GKKKKPLFIAIPTTSGTGSEVTSFAVITDPETGVKYP 141 (332)
T ss_pred CCEEEEECCchHHHHHHHHHHHHhCC-----------------CCCCCCCEEEeCCCCcchHhhCCeEEEEecCCCeeEE
Confidence 99999999999999999998876532 1223489999999999999999999999988889999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++..+|+.+|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 142 ~~~~~~~p~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~-------------------~~--------------- 187 (332)
T cd08180 142 LVDDELLPDIAILDPELVKTVPPAVTADTGMDVLTHALEAYVST-------------------DA--------------- 187 (332)
T ss_pred eeCCCccCCEEEECchhhccCCHHHHHHhHHHHHHHHHHHHHcC-------------------CC---------------
Confidence 99999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 188 -------------------------------------------------------------------------------- 187 (332)
T cd08180 188 -------------------------------------------------------------------------------- 187 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 188 -------------------------------------------------------------------------------- 187 (332)
T cd08180 188 -------------------------------------------------------------------------------- 187 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
+|+++.+|+++++++.++++++++|+.|.++|++|+||+
T Consensus 188 -----------------------------------------~~~s~~~a~~a~~~l~~~l~~a~~~~~~~~ar~~l~~as 226 (332)
T cd08180 188 -----------------------------------------NDFTDALAEKAIKLVFEYLPKAYKDGDDLEAREKMHNAS 226 (332)
T ss_pred -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 345556666666666677777777788899999999999
Q ss_pred HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Q psy2427 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 587 (660)
Q Consensus 508 ~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~ 587 (660)
++||++++++|++++|+|+|.|++.+ +++||+++++++|++++|
T Consensus 227 ~laG~a~~~~g~g~~Hal~~~l~~~~-------------~i~HG~~~ai~lp~~l~~----------------------- 270 (332)
T cd08180 227 CMAGMAFNNAGLGINHSLAHALGGKF-------------HIPHGRANAILLPYVIEF----------------------- 270 (332)
T ss_pred HHHHHHHhCccchhhhhhhhhhhcCC-------------CCChHHHHHHHHHHHHHH-----------------------
Confidence 99999999999999999999999874 799999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCc----HHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 588 KKADAGKLLADTVRGYMDQMKIENGLKVLGYTSAD----IPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 588 ~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~----i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
+++++++|++++|+|++|+|+|+++++ ++.+++.++.+ +...+||+++|+|++++||+
T Consensus 271 --------~~~~i~~l~~~lglp~~L~~~gi~~~~~~~~~~~~a~~a~~~-~~~~~~p~~~t~~~i~~i~~ 332 (332)
T cd08180 271 --------LIEAIKQLKKKLNIPETLKELGVDKEEFEAAIDEMAENALKD-ACTPTNPRKPTKEDLKEILE 332 (332)
T ss_pred --------HHHHHHHHHHHcCCCCCHHHcCCCHHHHHhHHHHHHHHHHhC-cCcCCCCCCCCHHHHHHHhC
Confidence 267899999999999999999999875 78999998754 34467999999999999984
|
1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat |
| >cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-57 Score=480.64 Aligned_cols=329 Identities=29% Similarity=0.419 Sum_probs=292.4
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++|.+|++||+|+++.+ +..+++.+.|++. +++.+|..+++||+.++|+++++.+++.+
T Consensus 1 p~~i~~G~g~l~~l~~~~~~~g~~~~liv~~~~~~~-~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 78 (332)
T cd07766 1 PTRIVFGEGAIEKIGEEIKRGGFDRALVVSDEGVVK-GVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAE 78 (332)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCCeEEEEeCCchhh-hHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcC
Confidence 579999999999999999999889999999999887 6889999999988 89999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||++|..+.++ +|+|+||||+|||||+|+++++++++ +.|.+
T Consensus 79 ~d~IIaiGGGs~~D~aK~ia~~~~~~----------------------~p~i~iPTt~~tgse~t~~avi~~~~-~~K~~ 135 (332)
T cd07766 79 VDAVIAVGGGSTLDTAKAVAALLNRG----------------------LPIIIVPTTAATGSEVSPKAVITDKE-GGKTG 135 (332)
T ss_pred cCEEEEeCCchHHHHHHHHHHHhcCC----------------------CCEEEEeCCCchhhccCCeEEEEeCC-CceEE
Confidence 99999999999999999999988643 89999999999999999999999887 88999
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++ ++|+++|+||+++.++|++++++|++|+|+|++|+|++. ..++
T Consensus 136 ~~~~-~~P~~vi~Dp~l~~t~P~~~~~~g~~Dal~h~~E~~~~~-------------------~~~~------------- 182 (332)
T cd07766 136 FFYP-DNPDVVFVDTDITKGLPPRQVASGGVDALSHALEAYSTK-------------------KSWP------------- 182 (332)
T ss_pred eccC-CccCEEEEChhhhhCCCHHHHHHHHHHHHHHHHHHHHCC-------------------CCCh-------------
Confidence 9998 899999999999999999999999999999999999872 2334
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 183 -------------------------------------------------------------------------------- 182 (332)
T cd07766 183 -------------------------------------------------------------------------------- 182 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 183 -------------------------------------------------------------------------------- 182 (332)
T cd07766 183 -------------------------------------------------------------------------------- 182 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as 507 (660)
+++.+|+++++++.++++++++ +.|.++|++|++++
T Consensus 183 -------------------------------------------~~~~~a~~~~~~l~~~l~~~~~-~~~~~ar~~l~~as 218 (332)
T cd07766 183 -------------------------------------------IADALAEKALETIEEDLPKAIE-PGDYDALEKVVWAA 218 (332)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4455555555555566666655 67888999999999
Q ss_pred HHHhHhhhc---ccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCC
Q psy2427 508 AMAGVGFGN---AGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 584 (660)
Q Consensus 508 ~~ag~~~~~---~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~ 584 (660)
+++|+++.+ ++++++|+|+|.|+..+ +++||+++++++|++++|+.+..++
T Consensus 219 ~~ag~~~~~~~~~~~~~~H~i~h~l~~~~-------------~i~HG~ava~~l~~~~~~~~~~~~~------------- 272 (332)
T cd07766 219 TLAGNGLFAAKSGGLGAAHAIGHALTALE-------------GIPHGEAVAVGLPAVLKVANDMNPE------------- 272 (332)
T ss_pred HHHHHHHcCCCcccchHhHHhhCHHhhCc-------------CCChHHHHHHHHHHHHHHhhhcCHh-------------
Confidence 999999999 99999999999999874 7999999999999999999876543
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHH
Q psy2427 585 SRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANL 652 (660)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~i 652 (660)
+...++++++|++++|+|++|+|+|+++++++.+++.++.+.....++|+++|++++++|
T Consensus 273 --------~~~~~~~i~~l~~~lglP~~l~e~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~i 332 (332)
T cd07766 273 --------IEHAIEAVFKFLEDLGAPTDLADLGVSKEDIDKLAEKALDDKETGYNEPRPVTLEDIREA 332 (332)
T ss_pred --------HHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHhcccccCCCCCCCCHHHHhhC
Confidence 223578999999999999999999999999999999998655544444999999999875
|
Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc |
| >cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=475.85 Aligned_cols=334 Identities=24% Similarity=0.323 Sum_probs=287.0
Q ss_pred ceEEECcChHHHHHHHHHhcCC--CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 29 STIRIGPGVTREVGMDMVNMKA--QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~--~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
++|+||.|++++|+++++++|. ++++||||+++.+ +++.+.|++.|+++.+|+++++||+.+.|+++++.++++
T Consensus 2 ~~i~fG~g~l~~l~~~~~~~g~~~~~~lvvtd~~~~~----~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~ 77 (347)
T cd08184 2 PRYIFGRGSFDQLNDLLAPKRKNKDPAVFFVDDVFQG----KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSF 77 (347)
T ss_pred CeEEECcCHHHHHHHHHHHcCCCCCeEEEEECcchhh----hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhh
Confidence 5899999999999999998863 6788889988764 578888998899999999999999999999999999998
Q ss_pred ---CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCC
Q psy2427 107 ---QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLK 183 (660)
Q Consensus 107 ---~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~ 183 (660)
++|+||||||||+||+||+++..+.++ .+.++|.... ....+.+|+|+||||+|||||+|+++|++++ +
T Consensus 78 ~~~~~D~IIaiGGGS~iD~AKaia~~~~~~-~~~~~~~~~~-----~~~~~~~PlIaVPTTaGTGSE~t~~aVit~~--~ 149 (347)
T cd08184 78 DGKLPCAIVGIGGGSTLDVAKAVSNMLTNP-GSAEDYQGWD-----LVKNPAVYKIGIPTLSGTGAEASRTAVLMGP--E 149 (347)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHhCC-CCHHHhcccc-----cccCCCCcEEEEeCCCccccccCCcEEEEeC--C
Confidence 999999999999999999999988775 5677775321 1233458999999999999999999999986 5
Q ss_pred ceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy2427 184 AKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFA 263 (660)
Q Consensus 184 ~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~a 263 (660)
.|.++.++.++|+.+|+||+++.++|+++++++++|+|+|++|+|++ ...+|++|.+++++
T Consensus 150 ~K~~i~~~~~~P~~aIvDp~l~~s~P~~~ta~tGiDal~HaiEay~s-------------------~~~~p~td~~A~~a 210 (347)
T cd08184 150 RKLGMNSDFTMFDQIILDPELTAGVPRDQYFYTGMDCYIHCIESLTG-------------------TYRNEVSDAYAEKA 210 (347)
T ss_pred ceeeeecCCcCCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHhc-------------------CCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999998 46788888888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHH
Q psy2427 264 LQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAP 343 (660)
Q Consensus 264 i~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~ 343 (660)
++++.+++..
T Consensus 211 i~li~~~~l~---------------------------------------------------------------------- 220 (347)
T cd08184 211 LELCRQVFLS---------------------------------------------------------------------- 220 (347)
T ss_pred HHHHHHhhhc----------------------------------------------------------------------
Confidence 8876443110
Q ss_pred HHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccC
Q psy2427 344 AVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLS 423 (660)
Q Consensus 344 ~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~ 423 (660)
T Consensus 221 -------------------------------------------------------------------------------- 220 (347)
T cd08184 221 -------------------------------------------------------------------------------- 220 (347)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy2427 424 LPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHM 503 (660)
Q Consensus 424 ~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~ 503 (660)
.+..|.++|++|
T Consensus 221 --------------------------------------------------------------------~~~~d~~ar~~m 232 (347)
T cd08184 221 --------------------------------------------------------------------DDMMSEENDDKL 232 (347)
T ss_pred --------------------------------------------------------------------cccCCHHHHHHH
Confidence 012367899999
Q ss_pred HHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCC
Q psy2427 504 HLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 583 (660)
Q Consensus 504 ~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~ 583 (660)
+||+++||++|+++|+|++|+|+|+|++++ +++||+++++++|++++|+ +++++++++++
T Consensus 233 ~~As~laG~a~~~~g~g~~Hal~h~L~~~~-------------~~~HG~~~av~lp~v~~~~----~~~~~~~~~~~--- 292 (347)
T cd08184 233 MMASYLGGMSIANSQVGVCHAASYGLSLHL-------------GYHHGIANCIAFNVLEEFY----PEGVDEFRLMM--- 292 (347)
T ss_pred HHHHHHHHHHhCCcccccchhhchHhhcCC-------------CCChHHHHHHHHHHHHHHh----hhhHHHHHHHH---
Confidence 999999999999999999999999999974 7999999999999999995 45555544433
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHH
Q psy2427 584 VSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANL 652 (660)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~i 652 (660)
+ ..++|+|++|++ |+++++++++++.|+.+ .+...||+.++.+++..+
T Consensus 293 -----------------~--~~~~glp~~L~~-gv~~~~~~~~~~~a~~~-~~~~~n~~~~~~~~~~~~ 340 (347)
T cd08184 293 -----------------K--KHKIDLPKGICA-SLTDAQMDRMVASTLVH-EKPLTNALGPNWKDILTR 340 (347)
T ss_pred -----------------H--HcCCCCchHHHc-CCCHHHHHHHHHHHHhC-cccccCCCCCCHHHhcCH
Confidence 1 267999999999 99999999999999965 456789999999988643
|
Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria. |
| >cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=471.91 Aligned_cols=340 Identities=18% Similarity=0.205 Sum_probs=288.7
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++| +|++||+|+++.+ +..+++.+.|++.|+.+. |..+.++|+.++|+++++.+++++
T Consensus 1 p~~i~~G~g~~~~l~~~~~~~~-~r~livt~~~~~~-~~~~~v~~~L~~~~i~~~-~~~~~~~p~~~~v~~~~~~~~~~~ 77 (351)
T cd08170 1 PGRYVQGPGALDELGEYLARLG-KRALIIADEFVLD-LVGAKIEESLAAAGIDAR-FEVFGGECTRAEIERLAEIARDNG 77 (351)
T ss_pred CCcEEECCCHHHHHHHHHHHhC-CeEEEEECHHHHH-HHHHHHHHHHHhCCCeEE-EEEeCCcCCHHHHHHHHHHHhhcC
Confidence 5799999999999999999997 9999999998877 688999999999999876 677889999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||+++.... +|+|+||||+|||||+|+++|+++++++.|..
T Consensus 78 ~D~IIavGGGS~iD~aK~ia~~~~------------------------~P~iaIPTTagTgse~t~~avi~~~~~~~k~~ 133 (351)
T cd08170 78 ADVVIGIGGGKTLDTAKAVADYLG------------------------APVVIVPTIASTDAPTSALSVIYTDDGEFEEY 133 (351)
T ss_pred CCEEEEecCchhhHHHHHHHHHcC------------------------CCEEEeCCccccCcccccceEEECCCCceeee
Confidence 999999999999999999997653 89999999999999999999999887777777
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++ .+|+++|+||+++.++|++++++|++|+|+|++|+|++.. .+
T Consensus 134 ~~~~-~~P~~ai~Dp~l~~t~P~~~~a~~~~Dal~h~~E~~~s~~-------------------~~-------------- 179 (351)
T cd08170 134 LFLP-RNPDLVLVDTDVIAKAPVRFLVAGIGDALATYFEARACVR-------------------SG-------------- 179 (351)
T ss_pred eecc-CCCCEEEEChHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH-------------------cc--------------
Confidence 6655 7899999999999999999999999999999999998720 00
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
+.+ .
T Consensus 180 ----------~~~-----------------------------------~------------------------------- 183 (351)
T cd08170 180 ----------GPN-----------------------------------M------------------------------- 183 (351)
T ss_pred ----------Ccc-----------------------------------c-------------------------------
Confidence 000 0
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 184 -------------------------------------------------------------------------------- 183 (351)
T cd08170 184 -------------------------------------------------------------------------------- 183 (351)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA---VYNQDDLEARSHMH 504 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~---~~~~~~~~ar~~~~ 504 (660)
++ ...+++++.+++++++++.++++++ ++++.|.++|++|+
T Consensus 184 -----------------~~-------------------~~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~~~ar~~~~ 227 (351)
T cd08170 184 -----------------FG-------------------GKPTLAALALAKLCYETLLEDGVAALAAVERGVVTPALERVV 227 (351)
T ss_pred -----------------cC-------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 00 0224578889999999999999987 45688999999999
Q ss_pred HHH-HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCC
Q psy2427 505 LAS-AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 583 (660)
Q Consensus 505 ~as-~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~ 583 (660)
||+ ++||++++++|++++|+|+|+|++++. .++++||+.++ +..+++.+..
T Consensus 228 ~a~~~laG~a~~~~g~~~~Hai~h~l~~~~~----------~~~~~HG~~~a-----------------~~~~~~~~~~- 279 (351)
T cd08170 228 EANTLLSGLGFESGGLAAAHAIHNGLTALPE----------THHALHGEKVA-----------------FGTLVQLVLE- 279 (351)
T ss_pred HHHHHHhhhhhccCCcHHHHHHHHhhhcccc----------cccccccchHH-----------------HHHHHHHHhc-
Confidence 997 799999999999999999999998631 12799999888 2334443321
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCC---CcHHHHHHhhccCCCCCCCC-CccCCHHHHHHHHHHH
Q psy2427 584 VSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTS---ADIPALVTGTLPQHRITKLA-PREQSEEDLANLFENS 656 (660)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~---~~i~~ia~~a~~~~~~~~~~-P~~~t~e~i~~il~~a 656 (660)
+.+...++++++|++++|+|++|+|+|+++ ++++.+++.++.+... .+| |+++|+|++++||+.+
T Consensus 280 -------~~~~~~~~~i~~l~~~lglP~~l~~~gi~~~~~~~~~~~a~~~~~~~~~-~~n~p~~~t~e~i~~i~~~~ 348 (351)
T cd08170 280 -------NRPAEEIEEVIDFCRAVGLPVTLADLGLEDVTEEELRKVAEAACAPGET-IHNMPFPVTPEDVYDAILAA 348 (351)
T ss_pred -------CCCHHHHHHHHHHHHHCCCCCcHHHcCCCCCCHHHHHHHHHHHhCChhh-hhcCCCCCCHHHHHHHHHHH
Confidence 112235799999999999999999999886 8999999999855443 456 9999999999999875
|
Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. |
| >PRK09423 gldA glycerol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-55 Score=470.79 Aligned_cols=347 Identities=19% Similarity=0.230 Sum_probs=292.0
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
++.|.. |++|+||.|++++++++++++| +|++||+|+++++. ..+++.+.|++.|+++ +|..+.++|+.+.|++++
T Consensus 2 ~~~f~~-p~~i~~G~g~~~~l~~~l~~~g-~~~livtd~~~~~~-~~~~v~~~l~~~~~~~-~~~~~~~ep~~~~v~~~~ 77 (366)
T PRK09423 2 DRIFIS-PSKYVQGKGALARLGEYLKPLG-KRALVIADEFVLGI-VGDRVEASLKEAGLTV-VFEVFNGECSDNEIDRLV 77 (366)
T ss_pred cccccC-CceEEECCCHHHHHHHHHHHcC-CEEEEEEChhHHHH-HHHHHHHHHHhCCCeE-EEEEeCCCCCHHHHHHHH
Confidence 355665 5899999999999999999999 99999999998765 7799999999999987 577889999999999999
Q ss_pred HHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 101 KFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 101 ~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
+.++++++|+||||||||++|+||++|.... +|+|+||||+|||||+|++++++++
T Consensus 78 ~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~------------------------~p~i~IPTtagtgSe~t~~avi~~~ 133 (366)
T PRK09423 78 AIAEENGCDVVIGIGGGKTLDTAKAVADYLG------------------------VPVVIVPTIASTDAPTSALSVIYTE 133 (366)
T ss_pred HHHHhcCCCEEEEecChHHHHHHHHHHHHcC------------------------CCEEEeCCccccCccccCceEEECC
Confidence 9999999999999999999999999997653 8999999999999999999999988
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
.++.|....++. +|+++|+||+++.++|++++++|++|+|+|++|+|++. ..++.+
T Consensus 134 ~~~~k~~~~~~~-~P~~~i~Dp~l~~tlP~~~~~~g~~Dal~ha~E~y~s~-------------------~~~~~~---- 189 (366)
T PRK09423 134 EGEFERYLFLPK-NPDLVLVDTAIIAKAPARFLAAGIGDALATWFEARACS-------------------RSGGTT---- 189 (366)
T ss_pred CCceeeeccccC-CCCEEEEchHHHHhCCHHHHHHhHHHHHHHHHHHHHHH-------------------hccccc----
Confidence 777777776664 79999999999999999999999999999999999872 111000
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
. .
T Consensus 190 ------------------------------------------------------~-~----------------------- 191 (366)
T PRK09423 190 ------------------------------------------------------M-A----------------------- 191 (366)
T ss_pred ------------------------------------------------------c-c-----------------------
Confidence 0 0
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
+
T Consensus 192 -----------------------------------------------------~-------------------------- 192 (366)
T PRK09423 192 -----------------------------------------------------G-------------------------- 192 (366)
T ss_pred -----------------------------------------------------c--------------------------
Confidence 0
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHH---hcCCCCH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA---VYNQDDL 497 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~---~~~~~~~ 497 (660)
.....+++.+|+.+++.+.++++++ ++++.|+
T Consensus 193 ---------------------------------------------~~~~~~a~~~a~~~~~~l~~~~~~a~~~~~~~~~~ 227 (366)
T PRK09423 193 ---------------------------------------------GKPTLAALALAELCYETLLEDGLKAKLAVEAKVVT 227 (366)
T ss_pred ---------------------------------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 0123456788999999999999977 4679999
Q ss_pred HHHHHHHHHH-HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHH
Q psy2427 498 EARSHMHLAS-AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEA 576 (660)
Q Consensus 498 ~ar~~~~~as-~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~i 576 (660)
++|++|+||+ ++||++++++|+|++|+|+|+||+++ ..++++||+.++ +.++
T Consensus 228 ~ar~~m~~as~~laG~a~~~~g~g~~Hal~h~l~~~~----------~~~~~~HG~~~a-----------------~~~~ 280 (366)
T PRK09423 228 PALENVIEANTLLSGLGFESGGLAAAHAIHNGLTALE----------DTHHLTHGEKVA-----------------FGTL 280 (366)
T ss_pred HHHHHHHHHHHHHhhhhhccCchHHHHHHHHhhhcch----------hhhhcccccHHH-----------------HHHH
Confidence 9999999996 89999999999999999999999852 112799999888 2344
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCC---CCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHH
Q psy2427 577 AELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYT---SADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653 (660)
Q Consensus 577 a~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~---~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il 653 (660)
++.++. +.+..+++++++|++++|+|++|+|+|++ +++++++++.++.+.....++|+++|++++++||
T Consensus 281 ~~~~~~--------~~~~~~i~~i~~l~~~lglP~~L~~~gi~~~~~~~~~~ia~~a~~~~~~~~n~p~~~t~~~i~~il 352 (366)
T PRK09423 281 TQLVLE--------NRPKEEIEEVIDFCHAVGLPTTLADLGLKEDSDEELRKVAEAACAEGETIHNMPFKVTPEDVAAAI 352 (366)
T ss_pred HHHHhc--------CCCHHHHHHHHHHHHHCCCCCcHHHcCCCCCCHHHHHHHHHHHhCCcchhhcCCCCCCHHHHHHHH
Confidence 444421 11234589999999999999999999985 5889999999986554444559999999999999
Q ss_pred HHH
Q psy2427 654 ENS 656 (660)
Q Consensus 654 ~~a 656 (660)
+++
T Consensus 353 ~~~ 355 (366)
T PRK09423 353 LAA 355 (366)
T ss_pred HHH
Confidence 865
|
|
| >cd08550 GlyDH-like Glycerol_dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-52 Score=445.44 Aligned_cols=339 Identities=16% Similarity=0.159 Sum_probs=267.1
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++| +|++||+|+...+ ...+++.+.|++.|+.+.++. +.++|+.+.|+++++.+++++
T Consensus 1 p~~i~~G~g~~~~l~~~~~~~g-~~~liv~~~~~~~-~~~~~v~~~l~~~~i~~~~~~-~~~~p~~~~v~~~~~~~~~~~ 77 (349)
T cd08550 1 PARYVCGDNAIKEIAAILSTFG-SKVAVVGGKTVLK-KSRPRFEAALAKSIIVVDVIV-FGGECSTEEVVKALCGAEEQE 77 (349)
T ss_pred CCeEEECcCHHHHHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHhcCCeeEEEE-cCCCCCHHHHHHHHHHHHhcC
Confidence 5799999999999999999999 8999999998776 467999999999887543221 345899999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||++|.... +|+|+||||+|||||+|+++|+++++++.|..
T Consensus 78 ~d~IIavGGGs~~D~aK~ia~~~~------------------------~p~i~VPTtagtgse~t~~avi~~~~~~~k~~ 133 (349)
T cd08550 78 ADVIIGVGGGKTLDTAKAVADRLD------------------------KPIVIVPTIASTCAASSNLSVIYSDDGEFARY 133 (349)
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC------------------------CCEEEeCCccccCccccceEEEEcCCCceeee
Confidence 999999999999999999997653 89999999999999999999999877666666
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.+ ..+|+++|+||+++.++|++++++|++|+|+||+|+|++...+ ...+++++.+++++++.+
T Consensus 134 ~~~-~~~P~~~i~Dp~l~~t~P~~~~a~g~~Dal~h~~E~~~s~~~~---------------~~~~~~~~~~a~~~~~~~ 197 (349)
T cd08550 134 DFQ-KRNPDLVLVDTEVIAQSPAEYLWSGIADALAKWYEAEAVIRGR---------------EMNGSLAPLMALAVAEAC 197 (349)
T ss_pred eec-CCCCCEEEEChHHHHhCCHHHHHHhHHHHHHHHHHHHHHhhcc---------------cccccchhHHHHHHHHHH
Confidence 554 4789999999999999999999999999999999999873100 012244555555544444
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
.+.+
T Consensus 198 ~~~l---------------------------------------------------------------------------- 201 (349)
T cd08550 198 TPTL---------------------------------------------------------------------------- 201 (349)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 4433
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 202 -------------------------------------------------------------------------------- 201 (349)
T cd08550 202 -------------------------------------------------------------------------------- 201 (349)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAV---YNQDDLEARSHMH 504 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~---~~~~~~~ar~~~~ 504 (660)
.+++++++ +++.+.++|+++.
T Consensus 202 --------------------------------------------------------~~~~~~a~~~~~~~~~~~a~~~~~ 225 (349)
T cd08550 202 --------------------------------------------------------LEYGVLAVESMEAKRVTQAFEEVV 225 (349)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHcCCCCHHHHHHH
Confidence 22333333 3456677787777
Q ss_pred HHHH-HHhHhhhcc----cchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHH
Q psy2427 505 LASA-MAGVGFGNA----GVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAEL 579 (660)
Q Consensus 505 ~as~-~ag~~~~~~----g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~ 579 (660)
++++ +||++++++ |++++|+|+|+|+++. ..++++||+.+++. .+++.
T Consensus 226 ~a~~~~ag~~~~~~~~~~~~~~~Hai~~~l~~~~----------~~~~~~HG~~~a~~-----------------~~~~~ 278 (349)
T cd08550 226 EANIMLAGTVFESGVDYYRLAAAHAVHNGLTALE----------ETHKVLHGEKVAYG-----------------VLVQL 278 (349)
T ss_pred HHHHHHhhhhcccCccCCccHHHHHHHHhhhccc----------cccccccccHHHHH-----------------HHHHH
Confidence 7774 577777666 9999999999999852 12379999999842 22322
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCC--CCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHH
Q psy2427 580 LGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGY--TSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENS 656 (660)
Q Consensus 580 lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi--~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a 656 (660)
+. ++ .+..+++++++|++++|+|++|+|+|+ ++++++.+++.++.+.....++|+++|+|+++++|.++
T Consensus 279 ~~---~~-----~~~~~~~~~~~l~~~lglP~~L~~~gi~~~~~~i~~ia~~a~~~~~~~~~~p~~~t~~~i~~~~~~~ 349 (349)
T cd08550 279 AL---EE-----DPREEIEELVEFYRQLGLPVTLADLGLEFSDEDIKKVASKAPATTETIHNPFGDVTEEDVAQAIIAA 349 (349)
T ss_pred HH---cC-----CCHHHHHHHHHHHHHCCCCCcHHHcCCCCCHHHHHHHHHHHcCCcchhhcCCCCCCHHHHHHHHHhC
Confidence 21 11 122458999999999999999999999 99999999999986544433448999999999999863
|
Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now. |
| >cd08172 GlyDH-like1 Glycerol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=445.84 Aligned_cols=335 Identities=17% Similarity=0.129 Sum_probs=279.2
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++++++| +|++||+|+++++. ..+++.+.|++.++.+.+|+++ |+.+.|+++++.+++++
T Consensus 2 p~~i~~G~g~l~~l~~~~~~~~-~~~liv~d~~~~~~-~~~~l~~~L~~~~~~~~~~~~~---p~~~~v~~~~~~~~~~~ 76 (347)
T cd08172 2 PGRYISGEGALDELGELLKRFG-KRPLIVTGPRSWAA-AKPYLPESLAAGEAFVLRYDGE---CSEENIERLAAQAKENG 76 (347)
T ss_pred CCeEEeCcCHHHHHHHHHHHhC-CeEEEEECHHHHHH-HHHHHHHHHhcCeEEEEEeCCC---CCHHHHHHHHHHHHhcC
Confidence 5899999999999999999996 99999999988664 6688889997777888788875 99999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||++|..+. +|+|+||||+|||||+|+++++++.+++.|..
T Consensus 77 ~D~iIavGGGs~~D~aK~ia~~~~------------------------~p~i~VPTT~gtgse~t~~avi~~~~~~~k~~ 132 (347)
T cd08172 77 ADVIIGIGGGKVLDTAKAVADRLG------------------------VPVITVPTLAATCAAWTPLSVIYDEDGAFLRV 132 (347)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHhC------------------------CCEEEecCccccCcccceeEEEEcCCCcEeee
Confidence 999999999999999999998773 89999999999999999999999876555655
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+. +..+|+.+|+||+++.++|++++++|++|+|+|++|+|++... ...+|+++.++.++++.+
T Consensus 133 ~~-~~~~P~~vi~Dp~l~~tlP~~~~~sg~~Dal~h~~E~~~s~~~----------------~~~~~~~~~~a~~~~~~~ 195 (347)
T cd08172 133 EY-LKRAPELVLVDPDLIANSPVRYLVAGIGDTLAKWYEASAISRS----------------LDSLDLFVQLALQAAKLC 195 (347)
T ss_pred cc-ccCCCCEEEECHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhc----------------cccCCchHHHHHHHHHHH
Confidence 54 4577999999999999999999999999999999999998310 015778888887777776
Q ss_pred HHHHH----HHhcCCCC---HHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 268 RQYFK----RAVYNQDD---LEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 268 ~~~l~----~~~~d~~~---~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
.+.+. ++++|++| .++|+
T Consensus 196 ~~~L~~~~~~a~~~~~~~~~~~a~~------------------------------------------------------- 220 (347)
T cd08172 196 RDLLLRDSEQALQDMAAGEVTPAFE------------------------------------------------------- 220 (347)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHH-------------------------------------------------------
Confidence 66664 33332211 01110
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 221 -------------------------------------------------------------------------------- 220 (347)
T cd08172 221 -------------------------------------------------------------------------------- 220 (347)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
..+|
T Consensus 221 ----------------------------------------------------------------------------~~~r 224 (347)
T cd08172 221 ----------------------------------------------------------------------------DVVD 224 (347)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1256
Q ss_pred HHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHh
Q psy2427 501 SHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~l 580 (660)
++|+|+++++|++++++|++++|+|+|+|++++. .++++||+.+++.+|..+.++..
T Consensus 225 ~~~~~a~~~ag~~~~~~~~g~~H~l~~~l~~~~~----------~~~~~HG~~~a~~l~~~~~~~~~------------- 281 (347)
T cd08172 225 TIIALAGLVGGFGDEYGRTAGAHAVHNGLTLLPE----------THDWLHGEKVAYGILVQLALEGR------------- 281 (347)
T ss_pred HHHHHhcccccccccCCchHHHHHHHHHhhcCcc----------ccccCcchHHHHHHHHHHHHcCC-------------
Confidence 6999999999999999999999999999998631 13799999999999987764310
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCC---CCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHH
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYT---SADIPALVTGTLPQHRITKLAPREQSEEDLANLFEN 655 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~---~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~ 655 (660)
...++++++|++++|+|++|+|+|++ +++++.+++.++.+.+...+||+++|+|+++++|++
T Consensus 282 -------------~~~~~~i~~l~~~lglp~~l~~~g~~~~~~~~i~~ia~~a~~~~~~~~~~p~~~~~~~i~~i~~~ 346 (347)
T cd08172 282 -------------EAEIEELLPFYRELGLPLSLAELGLLDPTDEELQKVAAFAASPKETIHLLPFPVTAEQLRQAIKK 346 (347)
T ss_pred -------------HHHHHHHHHHHHHCCCCCCHHHhCCCCCCHHHHHHHHHHHcCCcchhhcCCCCCCHHHHHHHHHh
Confidence 23478999999999999999999974 689999999998665544678999999999999986
|
Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. |
| >cd08171 GlyDH-like2 Glycerol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=437.76 Aligned_cols=337 Identities=18% Similarity=0.142 Sum_probs=279.0
Q ss_pred ceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC
Q psy2427 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC 108 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 108 (660)
++++||.|++++++++++++| +|++||+|+..... ..+++.+.|++.|+++.+|+.+.+||+.+.|+++++.+++.++
T Consensus 2 ~~y~~G~g~~~~l~~~~~~~~-~r~liv~d~~~~~~-~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 79 (345)
T cd08171 2 PSYSIGEDAYKKIPEVCEKYG-KKVVVIGGKTALAA-AKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEA 79 (345)
T ss_pred CCeEeCcCHHHHHHHHHHhcC-CEEEEEeCHHHHHH-HHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCC
Confidence 589999999999999999988 99999999876643 5799999999999999999999999999999999999999999
Q ss_pred CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceeee
Q psy2427 109 DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGI 188 (660)
Q Consensus 109 D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~~ 188 (660)
|+||||||||++|+||+++..+. +|+|+||||+|||||+|+++|+++++++.|..+
T Consensus 80 d~iiavGGGs~~D~aK~ia~~~~------------------------~p~i~VPTt~gtgse~t~~avi~~~~~~~K~~~ 135 (345)
T cd08171 80 DMIFAVGGGKAIDTVKVLADKLG------------------------KPVFTFPTIASNCAAVTAVSVVYNDDGSFKEYY 135 (345)
T ss_pred CEEEEeCCcHHHHHHHHHHHHcC------------------------CCEEEecCccccCccccceEEEEcCCCceeecc
Confidence 99999999999999999998764 899999999999999999999998776667644
Q ss_pred ecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHH
Q psy2427 189 ANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP--VSDVWARFALQT 266 (660)
Q Consensus 189 ~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~s~~la~~ai~~ 266 (660)
++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..++ +++.++
T Consensus 136 -~~~~~P~~~i~Dp~l~~~~P~~~~~~g~~Dal~ha~E~y~s~-------------------~~~~~~~~~~~a------ 189 (345)
T cd08171 136 -FFKNPPVHCFIDTEIIAEAPEKYLWAGIGDTLAKYYEVTFSA-------------------RGEKLDHTNLLG------ 189 (345)
T ss_pred -cccCCCCEEEECHHHHHhCCHHHHHHHHHHHHHHHHHHHHhc-------------------cccccchhHHHH------
Confidence 678899999999999999999999999999999999999883 1111 233333
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHH
Q psy2427 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346 (660)
Q Consensus 267 i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l 346 (660)
T Consensus 190 -------------------------------------------------------------------------------- 189 (345)
T cd08171 190 -------------------------------------------------------------------------------- 189 (345)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCc
Q psy2427 347 NFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 426 (660)
Q Consensus 347 ~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~ 426 (660)
T Consensus 190 -------------------------------------------------------------------------------- 189 (345)
T cd08171 190 -------------------------------------------------------------------------------- 189 (345)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHH
Q psy2427 427 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDL---EARSHM 503 (660)
Q Consensus 427 ~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~---~ar~~~ 503 (660)
+..++.+.+.|.++++++++|+.|. ++|++|
T Consensus 190 ----------------------------------------------~~~~~~~~~~l~~~l~~a~~~~~~~~~~~ar~~m 223 (345)
T cd08171 190 ----------------------------------------------VTISRMCSEPLLEYGKKALEDCRNNKVSYALEQV 223 (345)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 3334444555666666666665555 499999
Q ss_pred HHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccc-hHHHHHHhccCCHHHHHHHHHHhCC
Q psy2427 504 HLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMS-APAVFNFTAASSPERHIEAAELLGA 582 (660)
Q Consensus 504 ~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~il-lp~~l~~~~~~~~~~~~~ia~~lg~ 582 (660)
+||+.+ +.|++|.++|... .++++||..++++ +|++++++......+|.+++..++.
T Consensus 224 ~~a~~~--------~~G~~~~la~~~~--------------~~~~~Hg~~~al~~lp~~~~~~~hg~~~~~~~~~~~~~~ 281 (345)
T cd08171 224 ILAIIV--------TTGIVSNLVTPDY--------------NSGLAHALFYGLTTLPHIEENHLHGEVVSYGVLVLLLVD 281 (345)
T ss_pred HHHHHH--------hhcccccccccCC--------------chHHHHHHHHHhhcCcccccccCccchhHHHHHHHHHHc
Confidence 999665 2456677776211 1258899999986 8887787777777888888887641
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHH
Q psy2427 583 DVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFEN 655 (660)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~ 655 (660)
+ ...+++++++|++++|+|++|+|+|+++++++++++.++.+.. ..+||+++|+||++++|++
T Consensus 282 ---~------~~~~i~~i~~l~~~lglP~~L~~~gv~~~~l~~~~~~a~~~~~-~~~~p~~~t~e~i~~~~~~ 344 (345)
T cd08171 282 ---G------QEEELERIYPFNKSIGLPVCLEDLGLTEDDLEKVLEKALATQD-LKHVPYPVTKEMIAEAIKD 344 (345)
T ss_pred ---C------CHHHHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHhcCcch-HhhCCCCCCHHHHHHHHHh
Confidence 1 1245899999999999999999999999999999999985534 4679999999999999975
|
Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. |
| >cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-47 Score=404.04 Aligned_cols=319 Identities=16% Similarity=0.137 Sum_probs=256.4
Q ss_pred ceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccC--CCHHHHHHHHHHhHhc
Q psy2427 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE--PTGDSFLEATKFVRSV 106 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~--p~~~~v~~~~~~~~~~ 106 (660)
.+|+||.|++++++++++++|.+|++||||+.+.+.. .+++.+.|++.|+++.+|..+.++ |+.+.++++++.+++
T Consensus 2 ~~i~~G~g~l~~l~~~~~~~~~~~~livtd~~~~~~~-~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~- 79 (348)
T cd08175 2 DEIVIGEGALERLPEILKEFGYKKALIVADENTYAAA-GKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER- 79 (348)
T ss_pred cEEEECCCHHHHHHHHHHhcCCCcEEEEECCcHHHHH-HHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-
Confidence 4799999999999999999988999999999988764 599999999999988877766665 999999999999998
Q ss_pred CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCcee
Q psy2427 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKT 186 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~ 186 (660)
++|+||||||||++|+||++|.... +|+|+||||+|||++++..++++++ +.|.
T Consensus 80 ~~d~IIaIGGGs~~D~aK~vA~~~~------------------------~p~i~IPTTagt~g~~~~~~~v~~~--g~K~ 133 (348)
T cd08175 80 DTDLIIAVGSGTINDITKYVSYKTG------------------------IPYISVPTAPSMDGYTSSGAPIILN--GFKK 133 (348)
T ss_pred cCCEEEEECCcHHHHHHHHHHHhcC------------------------CCEEEecCcccccCccCCCceEecC--Cccc
Confidence 9999999999999999999996532 8999999999999999988877664 6788
Q ss_pred eeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2427 187 GIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266 (660)
Q Consensus 187 ~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~ 266 (660)
++. ..+|+++|+||+++.++|++++++|++|+| |.|.+ ...+++++.++.
T Consensus 134 ~~~--~~~P~~viiDp~l~~slP~~~~~sg~~Dal----e~~~~-------------------~~~~~~~~~~~~----- 183 (348)
T cd08175 134 TYQ--AVAPIAIFADTDILANAPQRMIAAGFGDLL----GKYTA-------------------LADWKIAHILTG----- 183 (348)
T ss_pred ccc--CCCCeEEEEChHHHHhCCHHHHHhhHHHHH----Hhccc-------------------HHhHHHHHHhcC-----
Confidence 883 468999999999999999999999999975 56654 122333331000
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHH
Q psy2427 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346 (660)
Q Consensus 267 i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l 346 (660)
T Consensus 184 -------------------------------------------------------------------------------- 183 (348)
T cd08175 184 -------------------------------------------------------------------------------- 183 (348)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCc
Q psy2427 347 NFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 426 (660)
Q Consensus 347 ~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~ 426 (660)
T Consensus 184 -------------------------------------------------------------------------------- 183 (348)
T cd08175 184 -------------------------------------------------------------------------------- 183 (348)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCC-----CHHHHH
Q psy2427 427 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD-----DLEARS 501 (660)
Q Consensus 427 ~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~-----~~~ar~ 501 (660)
+.++.++++++.++++++++++. |.++|+
T Consensus 184 ----------------------------------------------~~~~~~a~~~i~~~l~~~~~~~~~~~~~d~~ar~ 217 (348)
T cd08175 184 ----------------------------------------------EYYCETVWDLVEEALEKCLESADGLAARDEEAIK 217 (348)
T ss_pred ----------------------------------------------CcCcHHHHHHHHHHHHHHHhhHHhhhcCCHHHHH
Confidence 01233455666666666666553 568999
Q ss_pred HHHHHHHHHhHhhhccc-----chhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHH
Q psy2427 502 HMHLASAMAGVGFGNAG-----VHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEA 576 (660)
Q Consensus 502 ~~~~as~~ag~~~~~~g-----~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~i 576 (660)
+|++|+++||++|+++| ++++|+|+|.|+..+.. ...++++||+++++++|++++|+.+..++++..
T Consensus 218 ~l~~a~~laG~a~~~~g~s~~~~g~~Hal~h~l~~~~~~-------~~~~~~~HG~avai~lp~~~~~~~~~~~~~~~~- 289 (348)
T cd08175 218 QLMEALILSGLAMQLVGSSRPASGAEHHLSHYWEMEFLN-------RGKKPLLHGEKVGVGTLIVAALYERLLKKDLEG- 289 (348)
T ss_pred HHHHHHHHhhHHHHhcCCCCCCccHHHHHHHHHHHhccc-------ccCCcccchhHHHHHHHHHHHHHHHHHhccchh-
Confidence 99999999999999998 68999999999742100 001279999999999999999987654443321
Q ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccC
Q psy2427 577 AELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQ 633 (660)
Q Consensus 577 a~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~ 633 (660)
+ .....++++++|++++|+|++|+|+|+++++++++++.+...
T Consensus 290 ---~-----------~~~~~~~~i~~l~~~lglP~~l~~~gv~~~~l~~~~~~a~~~ 332 (348)
T cd08175 290 ---L-----------DKLKASAKIEELLKKVGAPTHPEEIGIDKELFRKSLILAKEI 332 (348)
T ss_pred ---h-----------cccccHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHHh
Confidence 1 012347899999999999999999999999999999998743
|
Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific. |
| >PRK10586 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-45 Score=388.21 Aligned_cols=339 Identities=18% Similarity=0.187 Sum_probs=264.9
Q ss_pred ccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 27 ASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 27 ~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
.|.++++|.|++++++++++++|.+|++||+|+..++. ..+.+.+.|++.++.+.+|++ +++.++++++.+..+ .
T Consensus 11 ~p~~y~~G~ga~~~l~~~~~~~g~~~~lvv~g~~~~~~-~~~~~~~~l~~~~~~~~~~~g---~~~~~~v~~l~~~~~-~ 85 (362)
T PRK10586 11 GPANYFSHPGSIDHLHDFFTDEQLSRAVWIYGERAIAA-AQPYLPPAFELPGAKHILFRG---HCSESDVAQLAAASG-D 85 (362)
T ss_pred CCcceEECcCHHHHHHHHHHhcCCCeEEEEEChHHHHH-HHHHHHHHHHHcCCeEEEeCC---CCCHHHHHHHHHHhc-c
Confidence 35899999999999999999999899999999887665 347788899999988777765 678999999888775 5
Q ss_pred CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCC-ce
Q psy2427 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLK-AK 185 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~-~K 185 (660)
++|+||||||||++|+||++|.... +|+|+||||+|||||+|+++|++++++. .|
T Consensus 86 ~~d~iiavGGGs~iD~aK~~a~~~~------------------------~p~i~vPT~a~t~s~~s~~avi~~~~~~~~~ 141 (362)
T PRK10586 86 DRQVVIGVGGGALLDTAKALARRLG------------------------LPFVAIPTIAATCAAWTPLSVWYNDAGQALH 141 (362)
T ss_pred CCCEEEEecCcHHHHHHHHHHhhcC------------------------CCEEEEeCCccccccccCceEEECCCCCeee
Confidence 8999999999999999999996542 8999999999999999999999986642 23
Q ss_pred eeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy2427 186 TGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQ 265 (660)
Q Consensus 186 ~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~ 265 (660)
..+..+ .|.++|+||+++.++|.+++++|++|+|+||+|+|++..+ ...+++++.++.++.+
T Consensus 142 ~~~~~~--~p~~~i~D~~l~~~~P~~~~~ag~~Dal~~~~Ea~~~~~~----------------~~~~~~~~~~~~~~a~ 203 (362)
T PRK10586 142 FEIFDD--ANFLVLVEPRIILNAPQEYLLAGIGDTLAKWYEAVVLAPQ----------------PETLPLTVRLGINNAL 203 (362)
T ss_pred ecccCC--CCCEEEEChHHHhcCCHHHHHHHHHHHHHHHHHHHHcccc----------------ccCCchhHHHHHHHHH
Confidence 444444 3999999999999999999999999999999999986210 2456788888888888
Q ss_pred HHHHHHHH----HhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhh
Q psy2427 266 TIRQYFKR----AVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMS 341 (660)
Q Consensus 266 ~i~~~l~~----~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~ 341 (660)
++.+.+.+ ++.|..+.
T Consensus 204 ~~~~~l~~~~~~a~~~~~~~------------------------------------------------------------ 223 (362)
T PRK10586 204 AIRDVLLNSSEQALADQQNG------------------------------------------------------------ 223 (362)
T ss_pred HHHHHHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 88877744 22110000
Q ss_pred HHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccc
Q psy2427 342 APAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHT 421 (660)
Q Consensus 342 l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~ 421 (660)
T Consensus 224 -------------------------------------------------------------------------------- 223 (362)
T PRK10586 224 -------------------------------------------------------------------------------- 223 (362)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q psy2427 422 LSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARS 501 (660)
Q Consensus 422 ~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~ 501 (660)
..-+++-+.+| .
T Consensus 224 ----------~~~~~~~~vv~----------------------------------------------------------a 235 (362)
T PRK10586 224 ----------QLTQDFCDVVD----------------------------------------------------------A 235 (362)
T ss_pred ----------CCCHHHHHHHH----------------------------------------------------------H
Confidence 00011111122 2
Q ss_pred HHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhC
Q psy2427 502 HMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLG 581 (660)
Q Consensus 502 ~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg 581 (660)
.++.+++++|+++.+++++++|+++|+|+.+. ..++++||+.+++-+-..+.+ .|
T Consensus 236 ~i~~~g~~s~~g~~~~~~a~aHai~~~lt~~~----------~~~~~lHGeaVa~G~l~~l~l---------------~~ 290 (362)
T PRK10586 236 IIAGGGMVGGLGERYTRVAAAHAVHNGLTVLP----------QTEKFLHGTKVAYGILVQSAL---------------LG 290 (362)
T ss_pred HHHHhhhhhhcccCCCccHHHHHHHHcccccc----------CCCcCCCHHHHHHHHHHHHHH---------------cC
Confidence 44567888999999999999999999999762 223699998888433322211 11
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCC---CcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHH
Q psy2427 582 ADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTS---ADIPALVTGTLPQHRITKLAPREQSEEDLANLFENS 656 (660)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~---~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a 656 (660)
.. ...+++++|++++|+|++|+|+|+++ ++++.+++.++..+...+++|+++|+|+++++|+++
T Consensus 291 ------~~-----~~~~~l~~~l~~lGLP~~L~dlGi~~~~~e~l~~ia~~a~~~~~~~~~~p~~vt~e~i~~ai~~~ 357 (362)
T PRK10586 291 ------QD-----DVLAQLIGAYQRFHLPTTLAELDVDINNQAEIDRVIAHTLRPVESIHYLPVTLTPDTLRAAFEKV 357 (362)
T ss_pred ------CH-----HHHHHHHHHHHHcCCCCCHHHCCCCCCCHHHHHHHHHHHcCCcchhhcCCCCCCHHHHHHHHHHH
Confidence 01 13688999999999999999999974 889999999987665667789999999999999865
|
|
| >cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=384.93 Aligned_cols=328 Identities=18% Similarity=0.162 Sum_probs=269.3
Q ss_pred cceEEECcChHHHHHHHHHh-cCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 28 SSTIRIGPGVTREVGMDMVN-MKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~-~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
|++|+||+|+++++++++++ .+.+|++||+|+++++ .+.+++.+.|++.+ .+.+| +.++|+.++|+++++.++++
T Consensus 2 p~~i~~g~g~l~~l~~~l~~~~~~~~~liv~d~~~~~-~~~~~v~~~l~~~~-~~~~~--~~~~~~~~~v~~~~~~~~~~ 77 (339)
T cd08173 2 PRDVVVGHGVLEKIPNVLRDLLLGGRVLVVTGPTTKS-IAGKKVEALLEDEG-EVDVV--IVEDATYEEVEKVESSARDI 77 (339)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCCeEEEEECCchHH-HHHHHHHHHHHhcC-CeEEE--EeCCCCHHHHHHHHHHhhhc
Confidence 58999999999999999985 4558999999999887 57799999999988 77666 56799999999999999999
Q ss_pred CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCcee
Q psy2427 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKT 186 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~ 186 (660)
++|+||||||||++|+||++|.... +|+|+||||+|||||+|+.++++++ ++|+
T Consensus 78 ~~d~iIaiGGGs~~D~aK~~a~~~~------------------------~p~i~iPTT~~t~s~~s~~a~i~~~--~~k~ 131 (339)
T cd08173 78 GADFVIGVGGGRVIDVAKVAAYKLG------------------------IPFISVPTAASHDGIASPRASIKGN--GKPI 131 (339)
T ss_pred CCCEEEEeCCchHHHHHHHHHHhcC------------------------CCEEEecCcccCCcccCCceEEEeC--CceE
Confidence 9999999999999999999995432 8999999999999999999999875 3465
Q ss_pred eeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2427 187 GIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266 (660)
Q Consensus 187 ~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~ 266 (660)
.+.. ..|.++|+||+++.++|++++++|++|+|+|+.+..-. .
T Consensus 132 ~~~~--~~P~~vi~Dp~l~~tlP~~~~~sg~~Dal~k~~~~~~~----------------------------------~- 174 (339)
T cd08173 132 SIKA--KPPLAVIADTGIIAKAPRRLLAAGCGDIISNYTAVRDW----------------------------------R- 174 (339)
T ss_pred EecC--CCCeEEEEcHHHHHhCCHHHHHHhHHHHHhhhHHHHHH----------------------------------H-
Confidence 5533 57999999999999999999999999999985321100 0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHH
Q psy2427 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346 (660)
Q Consensus 267 i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l 346 (660)
+ +
T Consensus 175 ----~--------------------------------------~------------------------------------ 176 (339)
T cd08173 175 ----L--------------------------------------A------------------------------------ 176 (339)
T ss_pred ----H--------------------------------------H------------------------------------
Confidence 0 0
Q ss_pred HhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCc
Q psy2427 347 NFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 426 (660)
Q Consensus 347 ~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~ 426 (660)
T Consensus 177 -------------------------------------------------------------------------------- 176 (339)
T cd08173 177 -------------------------------------------------------------------------------- 176 (339)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2427 427 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLA 506 (660)
Q Consensus 427 ~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~a 506 (660)
|++|. ...+++++.+|+++++.+.+++++ ++++.|.++| .|+.+
T Consensus 177 ------------~~~~~----------------------~~~~~~~~~~a~~~~~~i~~~~~~-~~~~~~~~~r-~l~~a 220 (339)
T cd08173 177 ------------HRLKG----------------------EYYSEYAASLALMSAKMVIKNADE-IKPGLEESVR-VVVKA 220 (339)
T ss_pred ------------HhccC----------------------CCCCHHHHHHHHHHHHHHHHhHHH-HhhccHHHHH-HHHHH
Confidence 00000 023467788999999999999999 5788899998 89999
Q ss_pred HHHHhHhhhccc-----chhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhC
Q psy2427 507 SAMAGVGFGNAG-----VHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLG 581 (660)
Q Consensus 507 s~~ag~~~~~~g-----~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg 581 (660)
+.++|++++++| .+..|.++|.|+..+. ++++||+.+|+.++. +..++
T Consensus 221 ~~~~G~~~~~~g~~~~~~g~~H~~~hal~~~~~-----------~~~~HG~~Va~g~~v----------------~~~l~ 273 (339)
T cd08173 221 LISSGVAMSIAGSSRPASGSEHLFSHALDRLAP-----------GKALHGEQCGVGTII----------------MMYLH 273 (339)
T ss_pred HHHhhHHHhhcCCCCCCchHHHHHHHHHHHhCC-----------CCCccHhHHHHHHHH----------------HHHHc
Confidence 999999999998 5889999999998631 369999999977532 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHh--hccCCCCCCCCCccCCHHHHHHHHHH
Q psy2427 582 ADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTG--TLPQHRITKLAPREQSEEDLANLFEN 655 (660)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~--a~~~~~~~~~~P~~~t~e~i~~il~~ 655 (660)
. ..++++++|++++|+|++|+++|++++++.+..+. .+..++++.+||+++|+|+++++|+.
T Consensus 274 ~------------~~~~~i~~l~~~lglp~~l~~lgi~~~~~~~~~~~~~k~~~~~~~~~~p~~~~~~~~~~~~~~ 337 (339)
T cd08173 274 G------------GNWRRIRDALKKVGAPTTAKELGIDDEIVIEALTIAHKIRPERYTILGEVGLTREAAEKAAEI 337 (339)
T ss_pred C------------ccHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHhcCCcceEeecCCCCCHHHHHHHHHh
Confidence 1 02578999999999999999999998887766543 35556788899999999999999974
|
Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph |
| >cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=348.10 Aligned_cols=280 Identities=16% Similarity=0.152 Sum_probs=231.0
Q ss_pred cceEEECcChHHHHHHHHHhcCC-CEEEEEECccccccchHHHHHHHHHhCCCeEEEEe-CcccCCCHHHHHHHHHHhHh
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKA-QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFD-KVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~-~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~-~~~~~p~~~~v~~~~~~~~~ 105 (660)
|++|+||.|++++++++++++|. +|++||||+++.+.. .+++.+.|++.|+++.+|. ++.++|+.++++++++.+++
T Consensus 1 p~~i~~G~g~l~~l~~~~~~~~~~~kvlivtd~~~~~~~-~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~ 79 (332)
T cd08549 1 PKEIVVGEGAINDIGPIINKIGVNSKIMIVCGNNTYKVA-GKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK 79 (332)
T ss_pred CcEEEECCChHHHHHHHHHHcCCCCcEEEEECCcHHHHH-HHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc
Confidence 57999999999999999998874 899999999988763 5999999999998877765 77889999999999999999
Q ss_pred cCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCce
Q psy2427 106 VQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAK 185 (660)
Q Consensus 106 ~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K 185 (660)
++|+||||||||++|+||++|... + +|+|+||||++++++.++.+.+... ++|
T Consensus 80 -~~d~IIaiGGGsv~D~aK~iA~~~--g----------------------ip~I~VPTT~~~~g~~s~v~~~~~~--~k~ 132 (332)
T cd08549 80 -DTEFLLGIGSGTIIDLVKFVSFKV--G----------------------KPFISVPTAPSMDGYASSVASLIVN--GKK 132 (332)
T ss_pred -CCCEEEEECCcHHHHHHHHHHHHc--C----------------------CCEEEeCCCcccCcccCCceEEeeC--Cce
Confidence 999999999999999999999443 2 8999999999877666666665432 444
Q ss_pred eeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHH---HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy2427 186 TGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCH---ALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARF 262 (660)
Q Consensus 186 ~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~h---aiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ 262 (660)
... +..+|..||+||+++.++|++++++|++|+|+| ++|+|++.. ...+++++..+ .
T Consensus 133 ~~~--~~~~P~~viiDp~~l~tlP~~~~~ag~~D~l~k~~~~~d~~~~~~-----------------~~~~~~~~~~~-~ 192 (332)
T cd08549 133 RSV--SAVYPEIIVGDIDIISQAPYEFITAGFGDVISNYTALADWYISSV-----------------ITGETYSDDIA-A 192 (332)
T ss_pred Eee--cCCCCcEEEEcHHHHHhCCHHHHHHhHHHHHHhhhHHHHHHHHHH-----------------hcCcccCHHHH-H
Confidence 443 678899999999999999999999999999986 789988731 12355666554 2
Q ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhhhccCCc-----cccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 263 ALQTIRQYFKRAVY--NQDDLEARSHMHLASAMAGVGFGNAGV-----HLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 263 ai~~i~~~l~~~~~--d~~~~~ar~~l~~as~laG~a~~~~g~-----~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
.++.+.+.....+. ++.|.++|..|++|++++|+++.|.|. +.+|+|+|+|+..+. ..++||
T Consensus 193 ~~~~~i~~~~~~~~~~~~~d~~~~~~l~~a~~~~G~~~~n~G~s~~~s~~~Hti~Hale~~~~-----------~~~~HG 261 (332)
T cd08549 193 MVKESINKVIDASTGILGRDEKSIKELVEALIINGIAMLIAGNSRPASGAEHHLSHALDMREP-----------EPHLHG 261 (332)
T ss_pred HHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhhHhheecCCCCCcchHHHHHHHHHHHcCC-----------CCcccH
Confidence 23334444444444 678999999999999999999999885 889999999998653 138999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
++|+++|+..+++... ..+++.++.+.+|.+
T Consensus 262 eaVaigm~~~~~l~~~-~~~~i~~ll~~~glp 292 (332)
T cd08549 262 TQVGVTTIIISEIHHY-TLDDIKKFLSKKGSL 292 (332)
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHHHHHHcCCC
Confidence 9999999999998764 788999999999975
|
Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. |
| >COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=328.70 Aligned_cols=174 Identities=21% Similarity=0.207 Sum_probs=154.9
Q ss_pred ccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 27 ASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 27 ~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
.|.++++|.|+++++++++.+.+.+|++||+|+.+++. ..+++.+.|+..|+. ++..+.++++.++++++...+.+.
T Consensus 7 ~P~~~~~G~~~i~~~~~~~~~~~~~~~lvv~g~~~~~~-~~~~~~~~l~~~g~~--~~~~~~~~a~~~ev~~~~~~~~~~ 83 (360)
T COG0371 7 LPREYIQGKGAINKLLEVLLKLGLSRALVVTGENTYAI-AGEKVEKSLKDEGLV--VHVVFVGEASEEEVERLAAEAGED 83 (360)
T ss_pred cCceEEECCChhhhHHHHHHhccCCceEEEEChhHHHH-HHHHHHHHhcccCcc--eeeeecCccCHHHHHHHHHHhccc
Confidence 35899999999999999999988899999999999887 559999999999873 334456799999999999999988
Q ss_pred CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccC-ceEEeeCCCCce
Q psy2427 107 QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTG-VSIFDYEPLKAK 185 (660)
Q Consensus 107 ~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~-~avi~~~~~~~K 185 (660)
++|+|||||||+++|+||++|...+ +|+|+|||++|+|+.+|+ .++++++. |.|
T Consensus 84 ~~d~vIGVGGGk~iD~aK~~A~~~~------------------------~pfIsvPT~AS~Da~~Sp~aSv~~~~~-g~~ 138 (360)
T COG0371 84 GADVVIGVGGGKTIDTAKAAAYRLG------------------------LPFISVPTIASTDAITSPVASVIYNGK-GDK 138 (360)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHcC------------------------CCEEEecCccccccccCCceeeEEcCC-Cce
Confidence 9999999999999999999999886 999999999999999999 56776644 467
Q ss_pred eeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhc
Q psy2427 186 TGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTA 230 (660)
Q Consensus 186 ~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s 230 (660)
+++... .|.++|+|++++..+|.|++++|++|+|++|+|..-+
T Consensus 139 ~~~~~~--~P~~vivD~evI~~AP~r~L~AGiGD~lakw~e~~dw 181 (360)
T COG0371 139 YSFLAK--APDAVIVDTEVIAAAPRRLLAAGIGDALAKWTEARDW 181 (360)
T ss_pred eeeecC--CCcEEEEcHHHHHhChHHHHHhcchHhhhhHHHHHHH
Confidence 776543 4999999999999999999999999999999998744
|
|
| >cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=336.73 Aligned_cols=276 Identities=20% Similarity=0.179 Sum_probs=218.9
Q ss_pred cceEEECcChHHHHHHHHH--hcCCCEEEEEECccccccchHHHHHHHHHhCCC-eEEEEeCcccCCCHHHHHHHHHHhH
Q psy2427 28 SSTIRIGPGVTREVGMDMV--NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGV-KFELFDKVRVEPTGDSFLEATKFVR 104 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~--~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi-~~~~~~~~~~~p~~~~v~~~~~~~~ 104 (660)
|++|+||.|++++++++++ ..+.+|++||+|+.+ .+++.+.|++.++ .+..+. ...+++.+.+.+.++..+
T Consensus 1 ~~~i~~G~g~l~~l~~~l~~~~~~~~r~livtd~~~-----~~~~~~~L~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~ 74 (331)
T cd08174 1 PLVLDIGEGAIARLGELLSDRNPNFGRVAVVSGPGV-----GEQVAESLKTSFSAEVEAVE-EVSNSDAEEIGARARSIP 74 (331)
T ss_pred CcEEEECcCHHHHHHHHHHHHHhcCCceEEEECCcH-----HHHHHHHHHhccCceEEEec-CCCccCHHHHHHHHHhcc
Confidence 5899999999999999998 455589999999886 4788889988776 444443 234555555555555444
Q ss_pred hcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCc
Q psy2427 105 SVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKA 184 (660)
Q Consensus 105 ~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~ 184 (660)
++|+||||||||++|+||++|.... +|+|+||||++|||++|+.+++++++++.
T Consensus 75 --~~d~iIaiGGGsv~D~aK~vA~~~~------------------------~p~i~vPTt~~tgs~~s~~a~i~~~~~k~ 128 (331)
T cd08174 75 --NVDAVVGIGGGKVIDVAKYAAFLRG------------------------IPLSVPTTNLNDDGIASPVAVLTDEGGKR 128 (331)
T ss_pred --CCCEEEEeCCcHHHHHHHHHHhhcC------------------------CCEEEecCccccCccccCceEEEeCCCee
Confidence 6999999999999999999998422 89999999999999999999999865443
Q ss_pred eeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHh-hcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy2427 185 KTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF-TALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFA 263 (660)
Q Consensus 185 K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~a 263 (660)
+. . .. +|++||+||+++.++|++++++|++|+|+|+.|.| |.. ...... ...+++++.+++.+
T Consensus 129 ~~-~--~~-~P~~vi~D~~~l~tlP~~~~~aG~~Dalak~~~~~d~~~-~~~~~~-----------~~~~~~~~~~a~~~ 192 (331)
T cd08174 129 SS-L--AA-IPIGVVIDLDVIRSAPRRLILAGIGDLISNITALADWEL-AHERGG-----------EPVDGLAALLSRAA 192 (331)
T ss_pred ee-c--CC-CCcEEEEcHHHHHhCCHHHHHhhHHHHHHhcchHHHHHH-HHHhcC-----------CCccHHHHHHHHHH
Confidence 33 2 33 89999999999999999999999999999998765 210 000000 12478999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCc-----cccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 264 LQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGV-----HLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 264 i~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~-----~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
++.+.+..+. ..|.+.++.+++|++++|++++++|. +++|+|+|+|+..+. ..++||++|
T Consensus 193 ~~~l~~~~~~----~~d~~~~~~l~~a~~laG~a~~~~g~~~~~~~~~H~i~h~l~~~~~-----------~~~~HG~~V 257 (331)
T cd08174 193 AEAVLRHPGS----ITDPEFLKTLAEGLVLSGIAMEIAGNSRPASGAEHLISHALDKLAP-----------GPALHGEQV 257 (331)
T ss_pred HHHHHhcccc----cCCHHHHHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHhcCC-----------CccccHHHH
Confidence 9998888776 36678899999999999999999986 689999999998642 138999999
Q ss_pred HhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 339 VMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 339 ai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
++++.....+.. ...+++.++.+.+|.|
T Consensus 258 a~g~~~~~~l~~-~~~~~i~~~l~~~glp 285 (331)
T cd08174 258 GLATYFMSHLRG-HHTERIQKLLTLTGFF 285 (331)
T ss_pred HHHHHHHHHHcC-CcHHHHHHHHHHcCCC
Confidence 999777766543 3567888888888875
|
Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific. |
| >PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=324.92 Aligned_cols=283 Identities=17% Similarity=0.175 Sum_probs=227.9
Q ss_pred eEEeccceEEECcChHHHHHHHHHhcCC-CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHH
Q psy2427 23 AFEMASSTIRIGPGVTREVGMDMVNMKA-QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATK 101 (660)
Q Consensus 23 ~~~~~~~~i~~G~g~~~~l~~~l~~~g~-~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~ 101 (660)
.|.. |++|+||.|+++++++++++++. +|++||+|+++.+. ..+++.+.|++.+ ++.+| +.++|+.++++++++
T Consensus 7 ~~~~-p~~i~~G~g~l~~l~~~l~~~~~~~~~livtd~~~~~~-~~~~l~~~l~~~~-~~~~~--~~~~~t~~~v~~~~~ 81 (350)
T PRK00843 7 WIQL-PRDVVVGHGVLDDIGDVCSDLKLTGRALIVTGPTTKKI-AGDRVEENLEDAG-DVEVV--IVDEATMEEVEKVEE 81 (350)
T ss_pred EEeC-CCeEEECCCHHHHHHHHHHHhCCCCeEEEEECCcHHHH-HHHHHHHHHHhcC-CeeEE--eCCCCCHHHHHHHHH
Confidence 3444 58999999999999999999875 89999999998876 5688999999888 76655 567999999999999
Q ss_pred HhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCC
Q psy2427 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEP 181 (660)
Q Consensus 102 ~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~ 181 (660)
.+++.++|+||||||||++|+||++|.. ++ +|+|+||||++|||++|+.+++++..
T Consensus 82 ~~~~~~~d~IIaiGGGsv~D~ak~vA~~--rg----------------------ip~I~IPTT~~tds~~s~~a~i~~~~ 137 (350)
T PRK00843 82 KAKDVNAGFLIGVGGGKVIDVAKLAAYR--LG----------------------IPFISVPTAASHDGIASPRASIKGGG 137 (350)
T ss_pred HhhccCCCEEEEeCCchHHHHHHHHHHh--cC----------------------CCEEEeCCCccCCcccCCceEEEeCC
Confidence 9999999999999999999999999943 32 89999999999999999999998642
Q ss_pred CCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH--HHh--hcCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q psy2427 182 LKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL--ESF--TALPYTERTPCPTDPLLRPAYQGQNPVSD 257 (660)
Q Consensus 182 ~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai--E~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~s~ 257 (660)
.|... ....|++||+||+++.++|.+++++|++|+|+|+. +.+ +.. .. ....+++..
T Consensus 138 --~~~~~--~~~~P~~vivD~~~l~tlP~~~~~sg~~d~l~k~~~~~d~~~~~~----l~-----------~~~~~~~~~ 198 (350)
T PRK00843 138 --KPVSV--KAKPPLAVIADTEIIAKAPYRLLAAGCGDIISNYTAVKDWRLAHR----LR-----------GEYYSEYAA 198 (350)
T ss_pred --ceeee--cCCCCeEEEEcHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHh----cc-----------CCCCCHHHH
Confidence 34433 34679999999999999999999999999998854 332 111 00 012456777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCC-----ccccccccccCCCcccccCCCCCCCCCCCc
Q psy2427 258 VWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAG-----VHLCHGLSYPISGNVKTFHPAGYSDDHPII 332 (660)
Q Consensus 258 ~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g-----~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~ 332 (660)
.+++.+++.+.++.+.+.+ .+...++.+..+...+|+++.++| ++++|+++|+|+.... ..+
T Consensus 199 ~~a~~~~~~i~~~~~~i~~--~~~~~~~~v~~~~~~~G~~~~~~g~~r~~l~~gHti~hale~~~~-----------~~~ 265 (350)
T PRK00843 199 ALSLMTAKMLIENADIIKP--GLEESARLVVKALISSGVAMSIAGSSRPASGSEHLFSHALDRLAP-----------GPA 265 (350)
T ss_pred HHHHHHHHHHHHhHHHHhh--ccHHHHHHHHHHHHHhHHHHhhcCCCCCcchHHHHHHHHHHHcCC-----------CCC
Confidence 8888898988888776553 233344558888889999887665 5689999999986532 138
Q ss_pred CchhHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 333 PHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 333 ~HG~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
+||++||++|...+.+.. ...+++.++.+.+|+|
T Consensus 266 ~HGeaVa~G~~~~~~l~~-~~~~~i~~ll~~~glP 299 (350)
T PRK00843 266 LHGEQCGVGTIIMMYLHG-GDWRKIRDALKKIGAP 299 (350)
T ss_pred ccHHHHHHHHHHHHHHcC-ccHHHHHHHHHHcCCC
Confidence 999999999998887753 3578888888888864
|
|
| >PRK00002 aroB 3-dehydroquinate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=298.48 Aligned_cols=271 Identities=19% Similarity=0.207 Sum_probs=208.1
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHHhHh
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~~~~ 105 (660)
|.+|+||.|+++++++++++++.+|++||+|+.+.+. +.+++.+.|++.|+++. +|++++++|+.+.++++++.+++
T Consensus 9 ~~~v~~G~g~~~~l~~~l~~~~~~~~livtd~~~~~~-~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~ 87 (358)
T PRK00002 9 SYPIIIGKGLLSELGELLAPLKGKKVAIVTDETVAPL-YLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLE 87 (358)
T ss_pred CCcEEEeCChHHHHHHHHHhcCCCeEEEEECCchHHH-HHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999987799999999998774 77999999999988766 47889999999999999999999
Q ss_pred cCC---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeC
Q psy2427 106 VQC---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYE 180 (660)
Q Consensus 106 ~~~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~ 180 (660)
.++ |+||||||||++|+||++|..+.++ +|+|+||||+ .+++++++.++++.+
T Consensus 88 ~~~~r~d~IIavGGGsv~D~aK~iA~~~~~g----------------------ip~i~IPTT~~s~~ds~~~~k~~i~~~ 145 (358)
T PRK00002 88 AGLDRSDTLIALGGGVIGDLAGFAAATYMRG----------------------IRFIQVPTTLLAQVDSSVGGKTGINHP 145 (358)
T ss_pred cCCCCCCEEEEEcCcHHHHHHHHHHHHhcCC----------------------CCEEEcCchhhhccccCcCCceecCCc
Confidence 877 9999999999999999999877654 8999999996 447888999888664
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH--HH-hhcCCCCCCCCCCCCCCCCCCCCCCCHH--
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL--ES-FTALPYTERTPCPTDPLLRPAYQGQNPV-- 255 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai--E~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~-- 255 (660)
.. | .+.++..+|..+|+||+++.++|++++++|++|+++|++ ++ ++.... ......
T Consensus 146 ~~--K-~~~g~~~~P~~vi~Dp~l~~tlP~~~~~~G~~d~ik~~~i~d~~~~~~l~----------------~~~~~~~~ 206 (358)
T PRK00002 146 LG--K-NLIGAFYQPKAVLIDLDFLKTLPERELRAGLAEVIKYGLIADPEFFEWLE----------------ANVDALLA 206 (358)
T ss_pred cc--c-eeeeecCCCceEEEcHHHHccCCHHHHHhhHHHHHHHHhhCCHHHHHHHH----------------hhHHHHhh
Confidence 32 4 456677889999999999999999999999999999998 43 333100 000111
Q ss_pred --HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCC-Cc
Q psy2427 256 --SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHP-II 332 (660)
Q Consensus 256 --s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~-~~ 332 (660)
.+.+.+...+.+......+..|+.+...|.-+ +++|.++|+|+...+ + .+
T Consensus 207 ~~~~~~~~~i~~~i~~k~~~v~~d~~e~g~r~~l----------------n~GHt~~HalE~~~~-----------~~~~ 259 (358)
T PRK00002 207 LDGEALEEAIARSCEIKADVVAADERESGLRALL----------------NFGHTFGHAIEAETG-----------YGKW 259 (358)
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCccccccHHH----------------hccchHHHHHhcccC-----------CCCc
Confidence 23344444444444555556677666666532 246777777776432 1 39
Q ss_pred CchhHHHhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 333 PHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 333 ~HG~avai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
+||++|+++|.....+... ...+++.++.+.+|.+
T Consensus 260 ~HG~aVa~Gm~~~~~l~~~~g~~~~~~~~~~~~~l~~~g~p 300 (358)
T PRK00002 260 LHGEAVAIGMVMAARLSERLGLLSEADAERIRALLERAGLP 300 (358)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999888776532 2355666666666653
|
|
| >cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=295.00 Aligned_cols=275 Identities=18% Similarity=0.192 Sum_probs=207.7
Q ss_pred ceEEECcChHHHHHHHHHhc-CCCEEEEEECccccccchHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHHhHh
Q psy2427 29 STIRIGPGVTREVGMDMVNM-KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~-g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~~~~ 105 (660)
.+|+||.|+++++++++... +.+|++||+|+++.+ .+.+++.+.|++.|+++. +|++++++|+.+.+.++++.+++
T Consensus 2 y~i~~G~g~~~~l~~~~~~~~~~~~~livtd~~~~~-~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~ 80 (345)
T cd08195 2 YPIYIGSGLLKELGELLAKLPKGSKILIVTDENVAP-LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLE 80 (345)
T ss_pred eeEEEcCchHhHHHHHHHhccCCCeEEEEECCchHH-HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 47899999999999987654 458999999999887 577999999999886554 67889999999999999999999
Q ss_pred cCC---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC--cCccccCceEEeeC
Q psy2427 106 VQC---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG--TGSETTGVSIFDYE 180 (660)
Q Consensus 106 ~~~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g--tgse~s~~avi~~~ 180 (660)
+++ |+||||||||++|+||++|..+.++ +|+|+||||++ ++|++++...++..
T Consensus 81 ~~~~r~d~IIaiGGGsv~D~ak~vA~~~~rg----------------------ip~i~VPTT~~a~vds~~~~k~~i~~~ 138 (345)
T cd08195 81 AGLDRKSLIIALGGGVVGDLAGFVAATYMRG----------------------IDFIQIPTTLLAQVDSSVGGKTGVNHP 138 (345)
T ss_pred cCCCCCCeEEEECChHHHhHHHHHHHHHhcC----------------------CCeEEcchhHHHHhhccCCCcceecCC
Confidence 888 9999999999999999999887755 89999999963 37888888887554
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH---HHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL---ESFTALPYTERTPCPTDPLLRPAYQGQNPVSD 257 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai---E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~ 257 (660)
. .|. ..++..+|.+||+||+++.++|++++++|++|+++|++ +.++.....+. ........+
T Consensus 139 ~--~kn-~~g~~~~P~~viiD~~~l~tlP~~~~~~G~~d~ik~~~i~d~~~~~~l~~~~------------~~~~~~~~~ 203 (345)
T cd08195 139 L--GKN-LIGAFYQPKLVLIDTDFLKTLPEREFRSGLAEVIKYGLIADAELFEWLEENK------------EAILALDPE 203 (345)
T ss_pred C--CCc-eecccCCCCEEEEehHHhhhCCHHHHHhHHHHHHHHHhhCCHHHHHHHHhhH------------HHHhccCHH
Confidence 2 343 45667889999999999999999999999999999998 66655210000 000001123
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhH
Q psy2427 258 VWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLS 337 (660)
Q Consensus 258 ~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~a 337 (660)
.+.+...+.+......+.+|+.+...|.- +.++|.++|+|+...+ + ..++||++
T Consensus 204 ~~~~~i~~~i~~k~~~v~~d~~e~~~r~~----------------ln~GHt~gHalE~~~~-~---------~~~~HGea 257 (345)
T cd08195 204 ALEEIIARSCEIKAEVVEQDEREKGLRAI----------------LNFGHTFGHAIEALTG-Y---------GTLLHGEA 257 (345)
T ss_pred HHHHHHHHHHHHHHHHhccCccccCCcee----------------ecCcccchHHHHhhcC-C---------CCcchHHH
Confidence 34444444455555555567766655551 3356888888876532 0 13899999
Q ss_pred HHhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 338 VVMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 338 vai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
|+++|.....+... ...+++.++.+.+|.+
T Consensus 258 VaiGm~~~~~l~~~~g~~~~~~~~~i~~~l~~~g~p 293 (345)
T cd08195 258 VAIGMVAAARLSERLGLLSEEDLERIEKLLKKLGLP 293 (345)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999887643 2356777777777764
|
Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol |
| >TIGR01357 aroB 3-dehydroquinate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=293.84 Aligned_cols=267 Identities=17% Similarity=0.229 Sum_probs=209.8
Q ss_pred eEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeE--EEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKF--ELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 30 ~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~--~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
+|+||.|+++++++++++ + +|++||+|+++.+. ..+++.+.|++.|+++ .+|++++++|+.++++++++.+++++
T Consensus 2 ~v~~G~g~l~~l~~~l~~-~-~~~livtd~~~~~~-~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~ 78 (344)
T TIGR01357 2 PVHVGEGLLDQLVEELAE-P-SKLVIITDETVADL-YADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAG 78 (344)
T ss_pred eEEEeCChHHHHHHHhhc-C-CeEEEEECCchHHH-HHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcC
Confidence 689999999999999988 4 89999999998876 6799999999988865 46888999999999999999999988
Q ss_pred C---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeCCC
Q psy2427 108 C---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYEPL 182 (660)
Q Consensus 108 ~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~~~ 182 (660)
+ |+||||||||++|+||++|..+.++ +|+|+||||+ .+++++++...++.+.
T Consensus 79 ~~r~d~IIavGGGsv~D~aK~iA~~~~~~----------------------~p~i~VPTT~~a~~ds~~~~k~~i~~~~- 135 (344)
T TIGR01357 79 LDRSSTIIALGGGVVGDLAGFVAATYMRG----------------------IRFIQVPTTLLAMVDSSVGGKTGINFPG- 135 (344)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHHccC----------------------CCEEEecCchhheeccccCcceeEeCCC-
Confidence 7 9999999999999999999877654 8999999985 5588998888876543
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH-------HHhhcCCCCCCCCCCCCCCCCCCCCCCCH-
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL-------ESFTALPYTERTPCPTDPLLRPAYQGQNP- 254 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai-------E~~~s~~~~~~~~~~~~~~~~~~~~~~~~- 254 (660)
.|. ..+....|+.+|+||+++.++|++++++|++|+++|++ +.++... .....
T Consensus 136 -~kn-~~~~~~~P~~viiDp~l~~tlP~~~~~~G~~d~ik~~~i~d~~~~~~l~~~~-----------------~~~~~~ 196 (344)
T TIGR01357 136 -GKN-LIGTFYQPKAVLIDPDFLKTLPDRELRSGMAEVIKHGLIADAELFDELESND-----------------KLVLRL 196 (344)
T ss_pred -Cce-EEeeccCCceEEEcHHHHhhCCHHHHHhHHHHHHHHHhhCCHHHHHHHHhhH-----------------HHHhcc
Confidence 343 33556789999999999999999999999999999998 4443310 00111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcC
Q psy2427 255 -VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIP 333 (660)
Q Consensus 255 -~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~ 333 (660)
..+.+++...+.+....+.+..|+.+...|.-+ ..+|.++|+|+...+ |+ .++
T Consensus 197 ~~~~~~~~~i~~~i~~k~~~~~~d~~e~~~r~~l----------------~~GHt~~Hale~~~~-~~---------~~~ 250 (344)
T TIGR01357 197 QELEHLEELIKRSIEVKASIVAEDEKESGLRAIL----------------NFGHTIGHAIEAEAG-YG---------KIP 250 (344)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccCCCcccchHHh----------------hcchhHHHHHHhhcC-CC---------CCC
Confidence 255677777777777777777888777777621 135888888876531 11 299
Q ss_pred chhHHHhhHHHHHHhhhcC------CchhhhhHhhhhccc
Q psy2427 334 HGLSVVMSAPAVFNFTAAS------SPERHIEAAELLGAD 367 (660)
Q Consensus 334 HG~avai~l~~~l~~~~~~------~~er~~~la~~lg~~ 367 (660)
||++|+++|....++.... ..+++.++.+.+|.+
T Consensus 251 HG~avaig~~~~~~la~~~~~~~~~~~~~i~~~l~~~g~p 290 (344)
T TIGR01357 251 HGEAVAIGMVCEAKLSERLGLLPAELIERLVQLLKRYGLP 290 (344)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999888876321 245666666666653
|
This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids. |
| >cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=290.79 Aligned_cols=272 Identities=15% Similarity=0.095 Sum_probs=194.9
Q ss_pred eEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeE--EEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 30 TIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKF--ELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 30 ~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~--~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
+|+||.|+++++++++.++|.+|++||||+++++. +.+++.+.|++.|+++ .+|++++++|+.++++++++.+++++
T Consensus 3 ~v~~G~g~l~~l~~~l~~~g~~rvlvVtd~~v~~~-~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~ 81 (355)
T cd08197 3 PYYLGENILDSVLGYLPELNADKYLLVTDSNVEDL-YGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALG 81 (355)
T ss_pred EEEEcCChHHHHHHHHHhcCCCeEEEEECccHHHH-HHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcC
Confidence 68999999999999999998899999999998876 7799999999988764 46789999999999999999999999
Q ss_pred CC---EEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCc--CccccCceEEeeCCC
Q psy2427 108 CD---AFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT--GSETTGVSIFDYEPL 182 (660)
Q Consensus 108 ~D---~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gt--gse~s~~avi~~~~~ 182 (660)
+| +||||||||++|+||++|..+.++ +|+|+||||+++ +|.++....++.
T Consensus 82 ~dr~~~IIAvGGGsv~D~ak~~A~~~~rg----------------------ip~I~IPTTlla~~da~i~~k~~vn~--- 136 (355)
T cd08197 82 ATRRSVIVALGGGVVGNIAGLLAALLFRG----------------------IRLVHIPTTLLAQSDSVLSLKQAVNS--- 136 (355)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHHhccC----------------------CCEEEecCcccccccccccCceeeeC---
Confidence 98 999999999999999999887654 899999999644 444444333322
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHH----HHH
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPV----SDV 258 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----s~~ 258 (660)
+.|+.+.+....|.+||+||+++.++|++++++|++|+++|++|.-...- ..+. .....+ .+.
T Consensus 137 ~~~kn~~g~~~~P~~vivDp~~l~tlP~~~~~aG~~d~ik~a~~~~~~~~-~~l~------------~~~~~~~~~~~~~ 203 (355)
T cd08197 137 TYGKNLIGLYYPPSFIFIDTRVLRTLPERQIRSGLCETVKNALAQEPDFL-PYLE------------SDLRNALDYDPDG 203 (355)
T ss_pred CCCcceeecCCCCcEEEEcHHHHhhCCHHHHHhhHHHHHHHHHhcCHHHH-HHHH------------HhHHHhhccCHHH
Confidence 22344567778899999999999999999999999999999997632200 0000 000000 001
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
+.+...+.+.-....+.+|+.+...|. -++++|+++|+|+.... ..++||++|
T Consensus 204 ~~~~i~~s~~~k~~vv~~D~~e~g~r~----------------~Ln~GHT~ghalE~~~~-----------~~~~HGeaV 256 (355)
T cd08197 204 LEEIIRLSIEAKLPVLSGDPYEKKLGL----------------ILEYGHTVGHAVELLSQ-----------GGLTHGEAV 256 (355)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccch----------------hhhCcccccHHHHhhcC-----------CCcChHHHH
Confidence 111111112122222334554443333 14566777777765431 138999999
Q ss_pred HhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 339 VMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 339 ai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
|++|....++... ...+++.++.+.++++
T Consensus 257 a~Gm~~~~~ls~~~g~~~~~~~~~i~~~l~~~~lp 291 (355)
T cd08197 257 AIGMLVAAEIARRMGLLSEEDVALHYELLSKLGLP 291 (355)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999988776542 2455666677777764
|
2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway. |
| >PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=279.25 Aligned_cols=247 Identities=21% Similarity=0.247 Sum_probs=190.3
Q ss_pred EECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEE
Q psy2427 32 RIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAF 111 (660)
Q Consensus 32 ~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~I 111 (660)
++|+|+++++++.+++++.+|++||+|++.++. ..+++.+.|++.|+++.++.....+++.+++.++.+.++..++|+|
T Consensus 1 ~ig~ga~~~l~~~l~~~~~~~~lvv~d~~t~~~-~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 79 (250)
T PF13685_consen 1 VIGPGALDKLPEILSELGLKKVLVVTDENTYKA-AGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLI 79 (250)
T ss_dssp EEESS-GGGHHHHHGGGT-SEEEEEEETTHHHH-HHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EE
T ss_pred CcCccHHHHHHHHHHhcCCCcEEEEEcCCHHHH-HHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEE
Confidence 479999999999999998899999999999887 5599999999999999877767778999999999999998999999
Q ss_pred EEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceeeeecC
Q psy2427 112 IAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANR 191 (660)
Q Consensus 112 IavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~~~~~ 191 (660)
||||||+++|++|++|...+ +|+++|||.+|+++.+|+.+.+..+ ++.|.++. +
T Consensus 80 i~vGgG~i~D~~K~~A~~~~------------------------~p~isVPTa~S~DG~aS~~Asl~~~-~g~k~s~~-~ 133 (250)
T PF13685_consen 80 IGVGGGTIIDIAKYAAFELG------------------------IPFISVPTAASHDGFASPVASLTVD-DGFKVSYG-P 133 (250)
T ss_dssp EEEESHHHHHHHHHHHHHHT--------------------------EEEEES--SSGGGTSSEEEEEET--TEEEEE--E
T ss_pred EEeCCcHHHHHHHHHHHhcC------------------------CCEEEeccccccccccCCCeeEEec-CCCceeec-C
Confidence 99999999999999999886 8999999999999999999999875 47888884 3
Q ss_pred CCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH---HHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2427 192 ALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL---ESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268 (660)
Q Consensus 192 ~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai---E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i~ 268 (660)
...|..+|+|.+++.++|.+++++|.+|.+++.. ++.++. .+.+.+++.+.+++.
T Consensus 134 a~~P~aIiaD~dIi~~AP~~l~~aG~GDli~k~tA~~DW~La~----------------------~~~e~~~~~~~~~v~ 191 (250)
T PF13685_consen 134 AKAPIAIIADTDIIANAPRRLIAAGFGDLISKYTALADWKLAH----------------------EYGEPYCEYAADMVE 191 (250)
T ss_dssp ----SEEEEEHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HTTS---HHHHHHHH
T ss_pred CCCCeEEEEeHHHHHhCCHHHHHhhHHHHHHhhhhHHHHHHHH----------------------HhhhhHHHHHHHHHH
Confidence 4569999999999999999999999999999974 455552 123356777888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHH
Q psy2427 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 339 (660)
Q Consensus 269 ~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ava 339 (660)
+.+..++.+++|.+.-..|+.+..++|++++.-.+|.+|.|+|+++... ...+||++|+
T Consensus 192 ~~~~~~~~~~~d~~~i~~L~~~L~~sg~amSRPaSGsEH~~sH~le~~~------------~~~lHG~~Vg 250 (250)
T PF13685_consen 192 EALRNILKDPDDPEAIKALMEALIMSGLAMSRPASGSEHLFSHALEMLA------------KPALHGEQVG 250 (250)
T ss_dssp HHHH---S-TT-HHHHHHHHHHHHHHHHHHSTTT-SHHHHHHHHHHHH-------------S---HHHHHH
T ss_pred HHHHHHHcCcCcHHHHHHHHHHHHHcccccCCCccchhhHHHHHHHhhc------------CCCccccccC
Confidence 8998888888899999999999999999998888999999999998764 1389999986
|
|
| >cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=286.92 Aligned_cols=266 Identities=15% Similarity=0.105 Sum_probs=195.6
Q ss_pred ceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHh-CCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTR-HGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~-~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
.+|+||.|++++++++++.++.+|++||+|+++.+ .+.+++.+.|++ .++.+.+|++++++|+.++++++++.+++++
T Consensus 2 y~v~~G~g~l~~l~~~~~~~~~~k~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~ 80 (344)
T cd08169 2 YNVAFGEHVLESVESYTTRDLFDQYFFISDSGVAD-LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALG 80 (344)
T ss_pred ccEEEcCChHHHHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcC
Confidence 36899999999999999998889999999999887 477999999987 7888889999999999999999999999876
Q ss_pred ---CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeCCC
Q psy2427 108 ---CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYEPL 182 (660)
Q Consensus 108 ---~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~~~ 182 (660)
+|+||||||||++|+||++|..+.++ +|+|+||||+ +++|.+++...++..
T Consensus 81 ~~r~d~IIaiGGGsv~D~ak~vA~~~~rg----------------------ip~i~VPTTlla~~ds~~g~k~~i~~~-- 136 (344)
T cd08169 81 ANRRTAIVAVGGGATGDVAGFVASTLFRG----------------------IAFIRVPTTLLAQSDSGVGGKTGINLK-- 136 (344)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHHhccC----------------------CcEEEecCCcccccccCccceEeEecC--
Confidence 89999999999999999999988755 8999999985 446777777766543
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHh---hcCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF---TALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~---~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~l 259 (660)
.|+.+.+....|+.||+||+++.++|++++++|++|+++|++-.. +... ..+ ...+
T Consensus 137 -~~kn~~g~~~~P~~viiDp~~l~tlP~~~~~~G~~e~ik~~~~~d~~~~~~l------------------~~~--~~~~ 195 (344)
T cd08169 137 -GGKNLLGTFYPPRAVFLDLRFLKTLPPRQILSGVAEIVKVALIKDAELFELL------------------EDH--LNSL 195 (344)
T ss_pred -CCceeecccCCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHhhCCHHHHHHH------------------Hhh--HHHH
Confidence 244555666789999999999999999999999999999986321 1100 000 0000
Q ss_pred H---HH-HHHHHHHHH----HHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCC
Q psy2427 260 A---RF-ALQTIRQYF----KRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPI 331 (660)
Q Consensus 260 a---~~-ai~~i~~~l----~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~ 331 (660)
. .. ..+++.+.+ ..+..|+.+...|.- ..++|.++|+|+.... +.
T Consensus 196 ~~~~~~~~~~~i~~~~~~k~~~v~~d~~e~g~r~~----------------ln~GHt~gHalE~~~~-----------~~ 248 (344)
T cd08169 196 NVYSLAVLEEYINRCISIKMSVIVGDEKESGIRRI----------------LNYGHTFGHAIELATD-----------FG 248 (344)
T ss_pred hhcCHHHHHHHHHHHHHHHhhhccCCcccccchhh----------------hhccchhhHHHhcCCC-----------CC
Confidence 0 00 111222221 122334434333331 3355666666654321 13
Q ss_pred cCchhHHHhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 332 IPHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 332 ~~HG~avai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
++||++||++|.....+... ...+++.++.+.+|.+
T Consensus 249 ~~HGeaVa~Gm~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp 290 (344)
T cd08169 249 IPHGEAVAVGMIYANVIANRLGLLSEHDYSRIYNLLKKLGLP 290 (344)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999998876543 3456677777777764
|
Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne |
| >PRK06203 aroB 3-dehydroquinate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-31 Score=284.04 Aligned_cols=271 Identities=16% Similarity=0.101 Sum_probs=192.1
Q ss_pred cceEEECcChHHHHHHHHHhc-------CCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEe-------CcccCC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNM-------KAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFD-------KVRVEP 91 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~-------g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~-------~~~~~p 91 (660)
+.+|++|.|.++.+++.+.+. +.+|++||||+++.+. +..+++.+.|++.|+++.+|+ +..++|
T Consensus 13 ~y~i~i~~~~~~~~~~~~~~~~~~~~~~~~~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~ 92 (389)
T PRK06203 13 EYPVYFTRDLFSPENPLLAEVLAADGEGKPKKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKN 92 (389)
T ss_pred ceeEEEeCChhhhhHHHHHHhhhhccccCCCeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCC
Confidence 367899999999999888643 2489999999998763 567899999998887654433 447777
Q ss_pred CHHHHHHHHHHhHhcCCC---EEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcC
Q psy2427 92 TGDSFLEATKFVRSVQCD---AFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTG 168 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D---~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtg 168 (660)
+.+.+.++.+.++++++| +||||||||++|+||++|.++.++ +|+|+|||| ++
T Consensus 93 ~~~~v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~~~rg----------------------ip~I~IPTT--ll 148 (389)
T PRK06203 93 DPALVEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAATAHRG----------------------VRLIRIPTT--VL 148 (389)
T ss_pred cHHHHHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHHhcCC----------------------CCEEEEcCC--Cc
Confidence 789999999999998887 999999999999999999877654 899999999 44
Q ss_pred ccccCceEEeeCCC-CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCC
Q psy2427 169 SETTGVSIFDYEPL-KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRP 247 (660)
Q Consensus 169 se~s~~avi~~~~~-~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~ 247 (660)
|+++...+.....+ ..|+.+.++...|++||+||+++.++|++++++|++|++++++=.
T Consensus 149 a~vda~~g~~~~v~~~~~kn~~g~~~~P~~vi~Dp~~l~tlP~~~~~~G~~e~iK~~~i~-------------------- 208 (389)
T PRK06203 149 AQNDSGVGVKNGINAFGKKNFLGTFAPPYAVINDFAFLTTLPDRDWRAGLAEAVKVALIK-------------------- 208 (389)
T ss_pred cccCCCccchhheecCCCceeeccccCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHhhc--------------------
Confidence 55543332211111 135677788899999999999999999999999999999987511
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHH--hhhh---ccCCccccccccccCCCc
Q psy2427 248 AYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS------AMA--GVGF---GNAGVHLCHGLSYPISGN 316 (660)
Q Consensus 248 ~~~~~~~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as------~la--G~a~---~~~g~~~~H~i~h~l~~~ 316 (660)
...+-+.+.. +..... + .+.+..+++...+ .++ +..+ .+..++++|+++|+|++.
T Consensus 209 ----d~~~~~~l~~--------~~~~~~-~-~~~~~~~~~i~~~~~~k~~~v~~~~d~~e~g~r~~Ln~gHt~gHAlE~~ 274 (389)
T PRK06203 209 ----DAAFFDWLEA--------HAAALA-A-RDPEAMEELIYRCAELHLEHIAGGGDPFEFGSSRPLDFGHWSAHKLEQL 274 (389)
T ss_pred ----CHHHHHHHHH--------hHHHHh-c-CCHHHHHHHHHHHHHHHHhhcccCCCccccCCcCccccchhhhhhhhhc
Confidence 1111111111 111100 0 0111112222211 111 2112 345688899999999974
Q ss_pred ccccCCCCCCCCCCCcCchhHHHhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 317 VKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 317 ~~~~~~~~~~~~~~~~~HG~avai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
.. +.++||++||++|+..+.++.. ...+|+.++++.+|.+
T Consensus 275 ~~-----------~~i~HGeAVAiGm~~~~~ls~~~g~~~~~~~~ri~~l~~~lglp 320 (389)
T PRK06203 275 TN-----------YALRHGEAVAIGIALDSLYSYLLGLLSEAEAQRILALLRALGFP 320 (389)
T ss_pred CC-----------CCCCcHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Confidence 31 2399999999999888776654 4578999999999875
|
|
| >PLN02834 3-dehydroquinate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=283.92 Aligned_cols=265 Identities=20% Similarity=0.226 Sum_probs=188.5
Q ss_pred cceEEECcChHHHHHHHHHhc-CCCEEEEEECccccccchHHHHHHHHHhCCCeEEE----EeCcccCCCHHHHHHHHHH
Q psy2427 28 SSTIRIGPGVTREVGMDMVNM-KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL----FDKVRVEPTGDSFLEATKF 102 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~-g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~----~~~~~~~p~~~~v~~~~~~ 102 (660)
+.+|+||.|++++ ++++... +.+|++||||+++.+. +.+++.+.|++.|+++.+ +.+.+.+|+.+.++++++.
T Consensus 78 ~y~I~iG~g~l~~-~~~l~~~~~g~rvlIVtD~~v~~~-~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~ 155 (433)
T PLN02834 78 SYPIYIGSGLLDH-GELLQRHVHGKRVLVVTNETVAPL-YLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDK 155 (433)
T ss_pred ceeEEEeCCcccC-HHHHhhccCCCEEEEEECccHHHH-HHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHH
Confidence 4678999999999 9988862 3389999999999887 789999999999886544 5677889999999999999
Q ss_pred hHhcCCC---EEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEee
Q psy2427 103 VRSVQCD---AFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDY 179 (660)
Q Consensus 103 ~~~~~~D---~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~ 179 (660)
+++.++| +|||||||+++|+||++|..+.++ +|+|+||||+ .+++ |
T Consensus 156 l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y~rg----------------------iplI~VPTTl--------lA~v-D 204 (433)
T PLN02834 156 ALESRLDRRCTFVALGGGVIGDMCGFAAASYQRG----------------------VNFVQIPTTV--------MAQV-D 204 (433)
T ss_pred HHhcCCCcCcEEEEECChHHHHHHHHHHHHhcCC----------------------CCEEEECCcC--------CeEE-e
Confidence 9999988 999999999999999999888765 8999999996 2333 4
Q ss_pred CCCCceeeeecC--------CCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH-------HHhhcCCCCCCCCCCCCCC
Q psy2427 180 EPLKAKTGIANR--------ALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL-------ESFTALPYTERTPCPTDPL 244 (660)
Q Consensus 180 ~~~~~K~~~~~~--------~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai-------E~~~s~~~~~~~~~~~~~~ 244 (660)
...+.|.++.++ ...|++||+||+++.++|++++++|++|++++++ |+.... ..
T Consensus 205 ss~ggK~~i~~~~~KNlig~f~~P~~VivDp~~l~tlP~r~~~sG~~E~iK~~~i~d~~~fe~l~~~----~~------- 273 (433)
T PLN02834 205 SSVGGKTGVNHPLGKNMIGAFYQPQCVLIDTDTLATLPDRELASGIAEVVKYGLIRDAEFFEWQEAN----ME------- 273 (433)
T ss_pred cCCCceeEEecCCcccccccccCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHHhcCHHHHHHHHhh----HH-------
Confidence 444556666544 6689999999999999999999999999998864 222210 00
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCC
Q psy2427 245 LRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAG 324 (660)
Q Consensus 245 ~~~~~~~~~~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~ 324 (660)
...... ...++....+.+......+-.|+.+...|. ..| ++|+++|+|+...+ |+
T Consensus 274 ---~~~~~~--~~~l~~~i~~s~~~K~~vv~~d~~e~G~r~------------~Ln----~GHT~gHAiE~~~~-~~--- 328 (433)
T PLN02834 274 ---KLLARD--PGALAYAIKRSCENKAEVVSLDEKESGLRA------------TLN----LGHTFGHAIETGPG-YG--- 328 (433)
T ss_pred ---hHhccC--HHHHHHHHHHHHHHHHHhhcCCCcccchhh------------hhc----CcHHHHHHHHhhcC-CC---
Confidence 000001 122233233333333433334443333332 124 44555555554321 11
Q ss_pred CCCCCCCcCchhHHHhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 325 YSDDHPIIPHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 325 ~~~~~~~~~HG~avai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
.++||++||++|.....+... ...+++.++.+.+|+|
T Consensus 329 ------~~~HGeaVaiGm~~~~~ls~~~G~~~~~~~~~i~~ll~~~gLP 371 (433)
T PLN02834 329 ------EWLHGEAVAAGTVMAADMSYRLGWIDMSLVNRIFALLKRAKLP 371 (433)
T ss_pred ------CCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Confidence 389999999999998766543 2356777777777754
|
|
| >cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=271.20 Aligned_cols=173 Identities=17% Similarity=0.094 Sum_probs=144.0
Q ss_pred ceEEECcChHHHHHHHHHh-------cCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEE-------eCcccCCC
Q psy2427 29 STIRIGPGVTREVGMDMVN-------MKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELF-------DKVRVEPT 92 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~-------~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~-------~~~~~~p~ 92 (660)
.+|++|.|.++++++.+.+ .+.+|++||||+++.+. ++.+++.+.|++.|+.+.+| ++....+.
T Consensus 2 y~v~i~~~~~~~~~~~l~~~~~~~~~~~~~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~ 81 (369)
T cd08198 2 YPVHFTRRAFSPENPLLADLLSAKEGGARPKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKND 81 (369)
T ss_pred ceEEEeCCchhhhHHHHHhhhccccccCCCeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCCh
Confidence 4789999999999998873 23489999999998773 45688999998888554433 45555555
Q ss_pred HHHHHHHHHHhHhcCCC---EEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCc
Q psy2427 93 GDSFLEATKFVRSVQCD---AFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGS 169 (660)
Q Consensus 93 ~~~v~~~~~~~~~~~~D---~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgs 169 (660)
.+.+.++++.+.++++| +|||||||+++|+||++|..+.++ +|+|+|||| ++|
T Consensus 82 ~~~v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~~~rG----------------------ip~I~IPTT--lla 137 (369)
T cd08198 82 PDLVEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAATAHRG----------------------VRLIRIPTT--VLA 137 (369)
T ss_pred HHHHHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHHhcCC----------------------CCEEEECCC--chh
Confidence 79999999999999997 999999999999999999988765 999999999 567
Q ss_pred cccCceEEeeCCCC-ceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH
Q psy2427 170 ETTGVSIFDYEPLK-AKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 225 (660)
Q Consensus 170 e~s~~avi~~~~~~-~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai 225 (660)
+++...+..+..+. .|+.+.++...|..||+||+++.|+|++++++|.+|+++|++
T Consensus 138 ~vDs~~g~k~~vn~~~~knlvg~f~~P~~viiDp~~l~tlP~r~~~~G~aE~iK~~~ 194 (369)
T cd08198 138 QNDSGVGVKNGINAFGKKNFLGTFAPPYAVINDFAFLTTLPDRDKRAGLAEAVKVAL 194 (369)
T ss_pred hhCCCeeeeecccCCCCcceeccccCCCEEEEcHHHHhhCCHHHHHhhHHHHHHHHh
Confidence 77655555443333 477888888999999999999999999999999999999986
|
DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized. |
| >cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=268.98 Aligned_cols=171 Identities=20% Similarity=0.267 Sum_probs=148.3
Q ss_pred ceEEECcChHHHHHHHHHhc---CCCEEEEEECccccccchHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHHh
Q psy2427 29 STIRIGPGVTREVGMDMVNM---KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKFV 103 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~---g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~~ 103 (660)
.+|++|.|.++++++.+... +.+|++||+|+++.+. ..+++.+.|++.|+++. +|++++++|+.++++++++.+
T Consensus 2 y~i~~~~~~~~~~~~~~~~~~~~~~~~~lvVtd~~v~~~-~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l 80 (354)
T cd08199 2 YEVVLLDGLLDPSNPLLLDVYLEGSGRRFVVVDQNVDKL-YGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDAL 80 (354)
T ss_pred eeEEEeCCccccchHHHHHhhccCCCeEEEEECccHHHH-HHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 36899999999999999865 4689999999998765 56899999998888776 679999999999999999999
Q ss_pred HhcCC----CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEE
Q psy2427 104 RSVQC----DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIF 177 (660)
Q Consensus 104 ~~~~~----D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi 177 (660)
++.++ |+|||||||+++|+||++|..+.++ +|+|+||||+ ..++++++...+
T Consensus 81 ~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~~rg----------------------~p~i~VPTT~lA~vD~~~g~K~~i 138 (354)
T cd08199 81 DAFGISRRREPVLAIGGGVLTDVAGLAASLYRRG----------------------TPYVRIPTTLVGLIDAGVGIKTGV 138 (354)
T ss_pred HHcCCCCCCCEEEEECCcHHHHHHHHHHHHhcCC----------------------CCEEEEcCccceeeecCCCCceEE
Confidence 99999 9999999999999999999988765 8999999985 358888888777
Q ss_pred eeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH
Q psy2427 178 DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 225 (660)
Q Consensus 178 ~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai 225 (660)
+....+.+.+ ....|..||+||+++.++|++++++|++|++++++
T Consensus 139 ~~~~~kn~ig---~~~~P~~viiD~~~l~tlP~~~~~~G~~e~ik~~~ 183 (354)
T cd08199 139 NFGGYKNRLG---AYHPPTLTLLDRSFLATLPERHIRNGLAEIIKMAV 183 (354)
T ss_pred eCCCCccccc---cCCCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHH
Confidence 6553333333 34569999999999999999999999999999986
|
2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s |
| >cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-29 Score=262.64 Aligned_cols=266 Identities=13% Similarity=0.079 Sum_probs=192.5
Q ss_pred ceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC
Q psy2427 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC 108 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 108 (660)
.+|+||.|+++++++.+. +|++||||+++.+. +.+++.+.|+ ++.+.+|++++++|+.+.++++++.+++.++
T Consensus 2 y~V~~G~g~l~~l~~~~~----~r~lIVtD~~v~~l-~~~~l~~~L~--~~~~~~~~~~e~~k~l~~v~~~~~~~~~~~~ 74 (346)
T cd08196 2 YKVVFGDSLLDSSTIQPL----ENDVFIVDANVAEL-YRDRLDLPLD--AAPVIAIDATEENKSLEAVSSVIESLRQNGA 74 (346)
T ss_pred eEEEEcCChHHHHHHhhC----CeEEEEECccHHHH-HHHHHHHHhc--CCeEEEeCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 478999999999876542 79999999999887 7789999887 5678889999999999999999999999999
Q ss_pred ---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeCCCC
Q psy2427 109 ---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYEPLK 183 (660)
Q Consensus 109 ---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~~~~ 183 (660)
|+||||||||++|+||++|.++.++ +|++.||||. ..+|.+++.+.++.. +
T Consensus 75 ~r~d~iIaiGGGsv~D~ak~vA~~~~rg----------------------i~~i~iPTTlla~vds~ig~k~~vn~~--~ 130 (346)
T cd08196 75 RRNTHLVAIGGGIIQDVTTFVASIYMRG----------------------VSWSFVPTTLLAQVDSCIGSKSSINVG--P 130 (346)
T ss_pred CCCcEEEEECChHHHHHHHHHHHHHHcC----------------------CCeEEecccHHHhhhccccccceecCC--C
Confidence 8999999999999999999999876 8999999997 447778888877643 2
Q ss_pred ceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHH---HhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 184 AKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALE---SFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 184 ~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
.| .+.+++..|..||+||+++.++|.+++++|.+|++++++= .++....... + .. ..++ + ..
T Consensus 131 ~K-n~ig~f~~P~~viiD~~~l~tlp~~~~~~G~aEiiK~~~i~~~~~f~~l~~~~------~----~~-~~~~--~-~~ 195 (346)
T cd08196 131 YK-NLVGNFYPPREIYIDPPFLSTLDEKEIYSGLGEALKICYARGPDVFARYLQLY------P----VL-FTEH--E-AL 195 (346)
T ss_pred CC-cccccCCCCCEEEEchHHhccCCHHHHHhhHHHHHHHHHhCCHHHHHHHHhhh------h----hh-cCCH--H-HH
Confidence 33 5666777899999999999999999999999999998861 1111000000 0 00 0000 0 01
Q ss_pred HHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHH
Q psy2427 261 RFALQTIRQ-YFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 339 (660)
Q Consensus 261 ~~ai~~i~~-~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ava 339 (660)
++.++...+ ....+.+|+.+...|.- +.++|.++|+|+.... +.++||++||
T Consensus 196 ~~~i~~s~~~K~~vv~~D~~e~g~R~~----------------Ln~GHt~gHAlE~~~~-----------~~~~HGeaVa 248 (346)
T cd08196 196 SRIIRSSLAIKKWFIEIDEFDQGERLL----------------LNYGHTFGHALESATN-----------FAIPHGIAVG 248 (346)
T ss_pred HHHHHHHHHHHHHHhhhCccccCccHH----------------HhccchhhHHHHccCC-----------CCCchHHHHH
Confidence 111111111 11112235555444442 2357888888876532 2399999999
Q ss_pred hhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 340 MSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 340 i~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
++|.....+... ...+++.++.+.++.+
T Consensus 249 iGm~~~~~ls~~~g~~~~~~~~~i~~~l~~~~lp 282 (346)
T cd08196 249 LGMLMANTIAVLAGGTMGLHSQELHEVLKKILLP 282 (346)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 999998887532 3456677777777754
|
DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized. |
| >COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=252.53 Aligned_cols=274 Identities=19% Similarity=0.195 Sum_probs=203.2
Q ss_pred ceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeE--EEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKF--ELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~--~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
..|++|.|.+++. ........+|++||+|+.+... +.+++...|+..|+.+ .++.+.+..++.+.+.++.+.+.+.
T Consensus 13 y~I~ig~gl~~~~-~l~~~~~~~k~~ivtd~~v~~~-y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~ 90 (360)
T COG0337 13 YPIYIGSGLLSDA-ELAELLAGRKVAIVTDETVAPL-YLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEA 90 (360)
T ss_pred eeEEEeCCcccch-hhhhhccCCeEEEEECchhHHH-HHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHc
Confidence 4589999999954 3233334469999999999887 7799999999999987 5778899999999999999999998
Q ss_pred CC---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeCC
Q psy2427 107 QC---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYEP 181 (660)
Q Consensus 107 ~~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~~ 181 (660)
++ |.|||+|||.+.|+|+|+|.++.|| +++|+||||. -.+|.+.+...++.+.
T Consensus 91 ~~~R~s~iialGGGvigDlaGF~Aaty~RG----------------------v~fiqiPTTLLAqVDSSVGGKtgIN~~~ 148 (360)
T COG0337 91 GLDRKSTLIALGGGVIGDLAGFAAATYMRG----------------------VRFIQIPTTLLAQVDSSVGGKTGINHPL 148 (360)
T ss_pred CCCCCcEEEEECChHHHHHHHHHHHHHHcC----------------------CCeEeccchHHHHhhcccccccccCCCC
Confidence 88 6999999999999999999999988 9999999995 3499999999998777
Q ss_pred CCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHH---HhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy2427 182 LKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALE---SFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258 (660)
Q Consensus 182 ~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (660)
+++..+.+++ |++||+||+++.|||+|.+++|..++++|++= .++.+.... . .......+ .
T Consensus 149 gKNmIGaF~q---P~aVi~D~~~L~TLp~re~~~G~AEvIK~g~I~D~~~f~~Le~~-~---------~~l~~~~~---~ 212 (360)
T COG0337 149 GKNLIGAFYQ---PKAVLIDTDFLKTLPPRELRAGMAEVIKYGLIADPEFFDWLEEN-L---------DALLALDP---A 212 (360)
T ss_pred CcceeecccC---CcEEEEchHHhccCCHHHHHHhHHHHHHHhhhcCHHHHHHHHHH-H---------HHHHhcch---H
Confidence 6666666654 99999999999999999999999999999862 122210000 0 00000000 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
+.+...+.+.-....+.+|+.+...|. -++++|+++|+|+...+ |+ .++||++|
T Consensus 213 l~~~I~rs~~~Ka~VV~~De~E~G~R~----------------~LN~GHT~GHAiE~~~~------y~----~~~HGeAV 266 (360)
T COG0337 213 LEELIARSCQIKAEVVAQDEKESGLRA----------------ILNLGHTFGHAIEALTG------YG----KWLHGEAV 266 (360)
T ss_pred HHHHHHHHHHHhhHHhhcCccchhhHH----------------HHhcchHHHHHHHHHhC------CC----ccchHHHH
Confidence 222222333333344556776666665 24556666666665432 11 28999999
Q ss_pred HhhHHHHHHhhhc------CCchhhhhHhhhhcccc
Q psy2427 339 VMSAPAVFNFTAA------SSPERHIEAAELLGADV 368 (660)
Q Consensus 339 ai~l~~~l~~~~~------~~~er~~~la~~lg~~~ 368 (660)
|++|....++... ...+|+..+.+.+|+|.
T Consensus 267 aiGmv~aa~ls~~lG~~~~~~~~r~~~~L~~~gLP~ 302 (360)
T COG0337 267 AIGMVMAARLSERLGLLDKADAERILNLLKRYGLPT 302 (360)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCc
Confidence 9999988876643 23578888888888754
|
|
| >PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=269.43 Aligned_cols=284 Identities=14% Similarity=0.088 Sum_probs=190.9
Q ss_pred eccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEE--EeCcccCCCHHHHHHHHHHh
Q psy2427 26 MASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL--FDKVRVEPTGDSFLEATKFV 103 (660)
Q Consensus 26 ~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~--~~~~~~~p~~~~v~~~~~~~ 103 (660)
..|.+|+||.|+++++++++.++| +|+++|++..+.. +.+++.+.|++.|+.+.. +.+.+.+.+.+.++++++.+
T Consensus 186 ~~p~~v~iG~g~l~~l~~~l~~~g-~k~~iV~d~~v~~--~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l 262 (542)
T PRK14021 186 IEPYDVRIGEGAMNHLPQVLGPKP-VKVALIHTQPVQR--HSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRL 262 (542)
T ss_pred CCCceEEEcCChHHHHHHHHHhcC-CeEEEEECccHHH--HHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHH
Confidence 346899999999999999999887 6778888876643 568999999998886432 22333334789999999999
Q ss_pred Hhc---CCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCC--CCcCccccCceEEe
Q psy2427 104 RSV---QCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTT--SGTGSETTGVSIFD 178 (660)
Q Consensus 104 ~~~---~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt--~gtgse~s~~avi~ 178 (660)
++. ++|+||||||||++|+||++|..+.++ +|+|.|||| ++++|.+++.+.++
T Consensus 263 ~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~rG----------------------i~~i~vPTTllA~vDss~ggkt~in 320 (542)
T PRK14021 263 GNEGFTRSDAIVGLGGGAATDLAGFVAATWMRG----------------------IRYVNCPTSLLAMVDASTGGKTGIN 320 (542)
T ss_pred HhcCCCCCcEEEEEcChHHHHHHHHHHHHHHcC----------------------CCEEEeCChHHhhhccccCCceEEE
Confidence 887 589999999999999999999998876 999999997 67899999999998
Q ss_pred eCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHH---hhcCCCCCCCCCCCCCCCCCCCCCCCHH
Q psy2427 179 YEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES---FTALPYTERTPCPTDPLLRPAYQGQNPV 255 (660)
Q Consensus 179 ~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~---~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (660)
.+..++..+.++ .|..|++|++++.++|.+++++|++|++++++=. ++....... ........... .....
T Consensus 321 ~~~gkn~ig~f~---~P~~V~iD~~~l~tlP~r~~~aG~gE~iK~~~i~d~~l~~~l~~~~-~~~~~~~~~~~--~~~~~ 394 (542)
T PRK14021 321 TPQGKNLVGSFY---TPAGVLADTKTLATLPNDIFIEGLGEVAKSGFIRDPEILRILEDHA-AELRAFDGSTF--LGSPL 394 (542)
T ss_pred CCCCceeEeeec---CCCEEEEeHHHHhhCCHHHHHhhHHHHHHHHhhCCHHHHHHHHhhH-HHHhhhccccc--cccch
Confidence 765544334443 6999999999999999999999999999998521 111000000 00000000000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
.+.+.....+.+.-....+..|+.+...|. -++++|+++|+|+...+ +.++||
T Consensus 395 ~~~~~~ii~~si~~K~~vv~~D~~e~g~r~----------------~Ln~GHT~gHaiE~~~~-----------~~~~HG 447 (542)
T PRK14021 395 EDVVAELIERTVKVKAYHVSSDLKEAGLRE----------------FLNYGHTLGHAIEKLEH-----------FRWRHG 447 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccchH----------------HHhccchhhHHHHcccC-----------CCCChH
Confidence 001111111111112222223444444443 14566777777776432 239999
Q ss_pred hHHHhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 336 LSVVMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 336 ~avai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
++||++|....++... ...+++.++.+.+|+|
T Consensus 448 eaVa~Gm~~~~~ls~~~g~~~~~~~~~i~~ll~~~~lp 485 (542)
T PRK14021 448 NAVAVGMVYAAELAHLLGYIDQDLVDYHRSLLASLGLP 485 (542)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999998776532 2356777777777764
|
|
| >PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-26 Score=251.26 Aligned_cols=240 Identities=18% Similarity=0.173 Sum_probs=185.8
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
+..|++|.|.+... + .|++||+|.++.+. +.+ .|.. ...+|++.+.+++.+.+.++++.+.+++
T Consensus 171 ~~~v~~~~~~~~~~-----~---~~~~ii~d~~v~~l-y~~----~l~~---~~~~~~~ge~~k~l~~v~~~~~~l~~~~ 234 (488)
T PRK13951 171 PHLVKIILGGFKRV-----R---NEELVFTTERVEKI-YGR----YLPE---NRLLFPDGEEVKTLEHVSRAYYELVRMD 234 (488)
T ss_pred ceeEEEeccccccC-----C---CeEEEEECCcHHHH-HHH----hhcc---cEEEecCCCCCCCHHHHHHHHHHHHHcC
Confidence 45778888887765 1 48899999998765 223 3332 4567899999999999999999999999
Q ss_pred C---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeCCC
Q psy2427 108 C---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYEPL 182 (660)
Q Consensus 108 ~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~~~ 182 (660)
+ |+|||||||+++|+||++|..|.|| +|+|.||||. ..+|.+++...++....
T Consensus 235 ~~R~d~viaiGGG~v~D~agf~A~~y~RG----------------------i~~i~vPTTlla~vDssiggK~~vn~~~~ 292 (488)
T PRK13951 235 FPRGKTIAGVGGGALTDFTGFVASTFKRG----------------------VGLSFYPTTLLAQVDASVGGKNAIDFAGV 292 (488)
T ss_pred CCCCCeEEEECChHHHHHHHHHHHHHhcC----------------------CCeEecCccHHHHHhcCCCCCeeeeCCCC
Confidence 9 9999999999999999999999987 9999999995 45899999888877655
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHH---HhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALE---SFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~l 259 (660)
++-.+.+ .+|.+||+||+++.|+|++++++|.+|+++|++- .++... .. . .-.+...+.+
T Consensus 293 KNliG~f---~~P~~viiD~~~l~TLp~~~~~~G~aE~iK~~~~~~~~~~~~~--~~-~-----------~~~~~~~~~~ 355 (488)
T PRK13951 293 KNVVGTF---RMPDYVIIDPTVTLSMDEGRFEEGVVEAFKMTILSGRGVELFD--EP-E-----------KIEKRNLRVL 355 (488)
T ss_pred CceeecC---CCCCEEEEchHHhcCCCHHHHHhhHHHHHHHHHhcChhHHhhh--Ch-h-----------hhhcccHHHH
Confidence 5555554 4599999999999999999999999999999981 111100 00 0 0011223445
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHH
Q psy2427 260 ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 339 (660)
Q Consensus 260 a~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ava 339 (660)
.+...+.+....+.+.+|+.|..+|..+- ++|+++|+|+..++ ++||++||
T Consensus 356 ~~~i~~si~~k~~vv~~D~~e~~~R~~LN----------------~GHTigHalE~~~~-------------i~HG~AVa 406 (488)
T PRK13951 356 SEMVKISVEEKARIVMEDPYDMGLRHALN----------------LGHTLGHVYEMLEG-------------VPHGIAVA 406 (488)
T ss_pred HHHHHHHHHHHHHHHccCCcchhHHHHHh----------------ccchHHHHHHhccC-------------CccHHHHH
Confidence 55555566667777788999999988322 45888888887542 99999999
Q ss_pred hhHHHHHHhhhc
Q psy2427 340 MSAPAVFNFTAA 351 (660)
Q Consensus 340 i~l~~~l~~~~~ 351 (660)
++|.....+...
T Consensus 407 ~gm~~~~~~s~~ 418 (488)
T PRK13951 407 WGIEKETMYLYR 418 (488)
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
|
|
| >cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=239.53 Aligned_cols=221 Identities=15% Similarity=0.060 Sum_probs=175.9
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH---hcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF---TAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~---~~~ 447 (660)
..|+|+||||++||||+|+.+++++++.+.+. . .. .|+.+|+||+++.++|++++++|++|+|+|++|.| +..
T Consensus 99 ~~p~i~vPTt~~tgs~~s~~a~i~~~~~k~~~-~--~~-~P~~vi~D~~~l~tlP~~~~~aG~~Dalak~~~~~d~~~~~ 174 (331)
T cd08174 99 GIPLSVPTTNLNDDGIASPVAVLTDEGGKRSS-L--AA-IPIGVVIDLDVIRSAPRRLILAGIGDLISNITALADWELAH 174 (331)
T ss_pred CCCEEEecCccccCccccCceEEEeCCCeeee-c--CC-CCcEEEEcHHHHHhCCHHHHHhhHHHHHHhcchHHHHHHHH
Confidence 47999999999999999999999987544433 2 23 89999999999999999999999999999999876 221
Q ss_pred CCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccc-----hhh
Q psy2427 448 PYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGV-----HLC 522 (660)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~-----~~~ 522 (660)
.. .. ...+++++.+++.+++.+.+++++ ..|.+.|+.++++++++|++++++|. +..
T Consensus 175 ~~-~~-------------~~~~~~~~~~a~~~~~~l~~~~~~----~~d~~~~~~l~~a~~laG~a~~~~g~~~~~~~~~ 236 (331)
T cd08174 175 ER-GG-------------EPVDGLAALLSRAAAEAVLRHPGS----ITDPEFLKTLAEGLVLSGIAMEIAGNSRPASGAE 236 (331)
T ss_pred Hh-cC-------------CCccHHHHHHHHHHHHHHHhcccc----cCCHHHHHHHHHHHHHHHHHHhccCCCCCCcHHH
Confidence 00 00 024678999999999999999887 36778999999999999999999986 689
Q ss_pred hhhhccccCCccccCCCCCCCCCCCCCcccc--cccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Q psy2427 523 HGLSYPISGNVKTFHPAGYSDDHPIIPHGLS--VVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTV 600 (660)
Q Consensus 523 H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~--~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l 600 (660)
|+|+|.|+..+. .+++||+. +|++++.+++.. ..+++
T Consensus 237 H~i~h~l~~~~~-----------~~~~HG~~Va~g~~~~~~l~~~------------------------------~~~~i 275 (331)
T cd08174 237 HLISHALDKLAP-----------GPALHGEQVGLATYFMSHLRGH------------------------------HTERI 275 (331)
T ss_pred HHHHHHHHhcCC-----------CccccHHHHHHHHHHHHHHcCC------------------------------cHHHH
Confidence 999999998631 15899984 455555554311 03578
Q ss_pred HHHHHHcCCCCcccccCCCCCcHHHHHHhhcc--CCCCCCCCCccCCHHHHHHHHH
Q psy2427 601 RGYMDQMKIENGLKVLGYTSADIPALVTGTLP--QHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 601 ~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~--~~~~~~~~P~~~t~e~i~~il~ 654 (660)
++|++++|+|++++++|++.+++.++++.+.. .+++.-.+-..+|+|..++.|+
T Consensus 276 ~~~l~~~glp~~~~~~g~~~~~~~~~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~ 331 (331)
T cd08174 276 QKLLTLTGFFLYVKELGLDKEEFLEAVQLAPSTRPGRYTILEHLGLSADELRDAYK 331 (331)
T ss_pred HHHHHHcCCCCCHHHcCCCHHHHHHHHHhccccCCCceEeeCCCCCCHHHHHHhhC
Confidence 89999999999999999999999998888753 2344444557899999888774
|
Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific. |
| >PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-22 Score=200.80 Aligned_cols=218 Identities=20% Similarity=0.187 Sum_probs=147.8
Q ss_pred EEeCcccCCCHHHHHHHHHHhHhcCC---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEE
Q psy2427 83 LFDKVRVEPTGDSFLEATKFVRSVQC---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLI 159 (660)
Q Consensus 83 ~~~~~~~~p~~~~v~~~~~~~~~~~~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i 159 (660)
++...|..++.+.+.++.+.+.+.++ |.|||||||.+.|++.++|..+.|| +|+|
T Consensus 2 ~ip~GE~~Ksl~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y~RG----------------------i~~i 59 (260)
T PF01761_consen 2 VIPAGEESKSLETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTYMRG----------------------IPFI 59 (260)
T ss_dssp EE-SSGGGSSHHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHBTT------------------------EEE
T ss_pred CcCCCcccCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHccC----------------------CceE
Confidence 46788999999999999999998888 5999999999999999999999987 9999
Q ss_pred EEcCCC--CcCccccCceEEeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHH---hhcCCCC
Q psy2427 160 AIPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES---FTALPYT 234 (660)
Q Consensus 160 ~IPTt~--gtgse~s~~avi~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~---~~s~~~~ 234 (660)
.||||. ..+|.+++...++....++-.+.+++ |..|++||+++.|||++.+.+|..+++++++-. ++....
T Consensus 60 ~vPTTLLa~vDssiGgK~~vN~~~~KN~iG~f~~---P~~V~iD~~~l~tL~~~e~~~G~aEiiK~a~i~d~~lf~~l~- 135 (260)
T PF01761_consen 60 QVPTTLLAQVDSSIGGKTGVNFPGGKNLIGTFYQ---PEAVLIDPSFLKTLPPREIRSGLAEIIKYALIADPELFELLE- 135 (260)
T ss_dssp EEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE------SEEEEEGGGGGGS-HHHHHHHHHHHHHHHHHTCHHHHHHHH-
T ss_pred eccccHHHHHhcccCCCeeeeCCCCCCcccccCC---CceeEEcHHHHhhccHHHHHhCHHHHHHHHHHCCHHHHHHHH-
Confidence 999996 44899999988887766666777765 999999999999999999999999999999621 111000
Q ss_pred CCCCCCCCCCCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccc
Q psy2427 235 ERTPCPTDPLLRPAYQGQNPV-----SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGL 309 (660)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~-----s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i 309 (660)
.....+ .+.+.+...+.+......+.+|+.+...|. -+.++|++
T Consensus 136 ---------------~~~~~~~~~~~~~~l~~~i~~si~~K~~iv~~D~~E~g~R~----------------~Ln~GHT~ 184 (260)
T PF01761_consen 136 ---------------DHAKDLLEERDPDALEEIIKRSIKIKARIVEQDEFEKGLRR----------------ILNFGHTF 184 (260)
T ss_dssp ---------------HHHHHHHHTTTHCHHHHHHHHHHHHHHHHHHHCTTSSSGGG----------------GGGTTHHH
T ss_pred ---------------hhHHHHhcccCHHHHHHHHHHHHHHHHHHhccCcccccchH----------------Hhcccchh
Confidence 000000 001111111122222222334555444444 25566777
Q ss_pred cccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHHhhhc------CCchhhhhHhhhhcccc
Q psy2427 310 SYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGADV 368 (660)
Q Consensus 310 ~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~~~~~------~~~er~~~la~~lg~~~ 368 (660)
+|+|+...+ +.++||++||++|....++... ...+++.++.+.+|.+.
T Consensus 185 gHAlE~~~~-----------~~i~HGeAVa~Gm~~~a~ls~~~g~~~~~~~~~i~~ll~~~glp~ 238 (260)
T PF01761_consen 185 GHALESLSG-----------YKISHGEAVAIGMVFAARLSVRLGLLDEDDVERIEELLEKLGLPT 238 (260)
T ss_dssp HHHHHHHCT-----------TTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHhcC-----------CCCchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCC
Confidence 777765432 2499999999999988776643 34567777777777653
|
... |
| >cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-21 Score=206.87 Aligned_cols=199 Identities=16% Similarity=0.022 Sum_probs=157.0
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHH---HHHHHhcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCH---ALESFTAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h---~~E~~~~~ 447 (660)
..|+|+||||++|+++.++.+.+..+ ++|.. .....|+.+|+||+++.++|++++++|.+|+|+| ++|.|++.
T Consensus 104 gip~I~VPTT~~~~g~~s~v~~~~~~--~k~~~--~~~~~P~~viiDp~~l~tlP~~~~~ag~~D~l~k~~~~~d~~~~~ 179 (332)
T cd08549 104 GKPFISVPTAPSMDGYASSVASLIVN--GKKRS--VSAVYPEIIVGDIDIISQAPYEFITAGFGDVISNYTALADWYISS 179 (332)
T ss_pred CCCEEEeCCCcccCcccCCceEEeeC--CceEe--ecCCCCcEEEEcHHHHHhCCHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence 36999999999887666666655543 33443 3678899999999999999999999999999987 99999874
Q ss_pred CCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhHhhhcccc-----h
Q psy2427 448 PYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVY--NQDDLEARSHMHLASAMAGVGFGNAGV-----H 520 (660)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~--~~~~~~ar~~~~~as~~ag~~~~~~g~-----~ 520 (660)
. ...+++++..+ ..++.+.+.+.+.+. ++.|.++|+.|++|++++|+++.|.|+ +
T Consensus 180 ~-----------------~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~d~~~~~~l~~a~~~~G~~~~n~G~s~~~s~ 241 (332)
T cd08549 180 V-----------------ITGETYSDDIA-AMVKESINKVIDASTGILGRDEKSIKELVEALIINGIAMLIAGNSRPASG 241 (332)
T ss_pred H-----------------hcCcccCHHHH-HHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhhHhheecCCCCCcch
Confidence 1 02356777666 334555555555555 789999999999999999999999885 8
Q ss_pred hhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Q psy2427 521 LCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTV 600 (660)
Q Consensus 521 ~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l 600 (660)
..|.|+|.|+..++ .+++||++||+.++..++...+ ..+++
T Consensus 242 ~~Hti~Hale~~~~-----------~~~~HGeaVaigm~~~~~l~~~----------------------------~~~~i 282 (332)
T cd08549 242 AEHHLSHALDMREP-----------EPHLHGTQVGVTTIIISEIHHY----------------------------TLDDI 282 (332)
T ss_pred HHHHHHHHHHHcCC-----------CCcccHHHHHHHHHHHHHHhcc----------------------------cHHHH
Confidence 89999999998641 2588999999988877765431 15789
Q ss_pred HHHHHHcCCCCcccccCCCCCcHHHHHHhh
Q psy2427 601 RGYMDQMKIENGLKVLGYTSADIPALVTGT 630 (660)
Q Consensus 601 ~~l~~~lglp~~L~elGi~~~~i~~ia~~a 630 (660)
+++++++|+|++++++|++.+++-+..+.+
T Consensus 283 ~~ll~~~glp~~~~~~~~~~~~~~~~~~~d 312 (332)
T cd08549 283 KKFLSKKGSLNRDLNLIGVSEVLLYAMLNA 312 (332)
T ss_pred HHHHHHcCCCCCHHHcCCCHHHHHHHHHHh
Confidence 999999999999999999877776666555
|
Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. |
| >PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-20 Score=197.75 Aligned_cols=225 Identities=14% Similarity=0.043 Sum_probs=169.7
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHH--H--hc
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES--F--TA 446 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~--~--~~ 446 (660)
..|+|+||||++||||+++.++++.+. .|... ....|+.+|+||+++.++|++++++|++|+|+|+.+. . +.
T Consensus 111 gip~I~IPTT~~tds~~s~~a~i~~~~--~~~~~--~~~~P~~vivD~~~l~tlP~~~~~sg~~d~l~k~~~~~d~~~~~ 186 (350)
T PRK00843 111 GIPFISVPTAASHDGIASPRASIKGGG--KPVSV--KAKPPLAVIADTEIIAKAPYRLLAAGCGDIISNYTAVKDWRLAH 186 (350)
T ss_pred CCCEEEeCCCccCCcccCCceEEEeCC--ceeee--cCCCCeEEEEcHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999753 34333 3457999999999999999999999999999997642 1 22
Q ss_pred CCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhccc-----chh
Q psy2427 447 LPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAG-----VHL 521 (660)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g-----~~~ 521 (660)
.. . . ...+++...+++.+++.+.++.+.+.+ . ....++.+..+...+|++++++| ++.
T Consensus 187 ~l-~-~-------------~~~~~~~~~~a~~~~~~i~~~~~~i~~-~-~~~~~~~v~~~~~~~G~~~~~~g~~r~~l~~ 249 (350)
T PRK00843 187 RL-R-G-------------EYYSEYAAALSLMTAKMLIENADIIKP-G-LEESARLVVKALISSGVAMSIAGSSRPASGS 249 (350)
T ss_pred hc-c-C-------------CCCCHHHHHHHHHHHHHHHHhHHHHhh-c-cHHHHHHHHHHHHHhHHHHhhcCCCCCcchH
Confidence 10 0 0 023567778999999999999887653 2 34455668888888999998766 568
Q ss_pred hhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Q psy2427 522 CHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVR 601 (660)
Q Consensus 522 ~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~ 601 (660)
.|.++|.|...+ .++++||+.+|+-+...+.+. . . ..++++
T Consensus 250 gHti~hale~~~-----------~~~~~HGeaVa~G~~~~~~l~----------------~-------~-----~~~~i~ 290 (350)
T PRK00843 250 EHLFSHALDRLA-----------PGPALHGEQCGVGTIIMMYLH----------------G-------G-----DWRKIR 290 (350)
T ss_pred HHHHHHHHHHcC-----------CCCCccHHHHHHHHHHHHHHc----------------C-------c-----cHHHHH
Confidence 899999998752 125899988886544333211 0 0 146788
Q ss_pred HHHHHcCCCCcccccCCCCCcHHHHH--HhhccCCCCCCCCCccCCHHHHHHHHHH
Q psy2427 602 GYMDQMKIENGLKVLGYTSADIPALV--TGTLPQHRITKLAPREQSEEDLANLFEN 655 (660)
Q Consensus 602 ~l~~~lglp~~L~elGi~~~~i~~ia--~~a~~~~~~~~~~P~~~t~e~i~~il~~ 655 (660)
++++++|+|++++++|++.+++.+.. ...++.++++-.+-..++++.++++++.
T Consensus 291 ~ll~~~glP~~l~~l~~~~~~~~~~~~~dk~~r~~r~t~l~~~~~~~~~~~~~~~~ 346 (350)
T PRK00843 291 DALKKIGAPTTAKELGIDDEYIIEALTIAHTIRPERYTILGDRGLTREAAEKAARI 346 (350)
T ss_pred HHHHHcCCCCCHHHcCCCHHHHHHHHHHHhhcCcccEEeecCCCCCHHHHHHHHHh
Confidence 99999999999999999988887664 3334556777777788999999988863
|
|
| >cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-18 Score=180.54 Aligned_cols=94 Identities=30% Similarity=0.398 Sum_probs=88.5
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCC
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~ 449 (660)
+.+|+|+||||+|||||+|+++|++++ +.|.++.++.++|+.+|+||+++.++|+++++++|+|||+|++|+|++.
T Consensus 122 ~~~PlIaVPTTaGTGSE~t~~aVit~~--~~K~~i~~~~~~P~~aIvDp~l~~s~P~~~ta~tGiDal~HaiEay~s~-- 197 (347)
T cd08184 122 PAVYKIGIPTLSGTGAEASRTAVLMGP--ERKLGMNSDFTMFDQIILDPELTAGVPRDQYFYTGMDCYIHCIESLTGT-- 197 (347)
T ss_pred CCCcEEEEeCCCccccccCCcEEEEeC--CceeeeecCCcCCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHhcC--
Confidence 446899999999999999999999988 5788899999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHH
Q psy2427 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 484 (660)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~ 484 (660)
..||++|.+|+++++++.
T Consensus 198 -----------------~~~p~td~~A~~ai~li~ 215 (347)
T cd08184 198 -----------------YRNEVSDAYAEKALELCR 215 (347)
T ss_pred -----------------CCCHHHHHHHHHHHHHHH
Confidence 789999999999999884
|
Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria. |
| >cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-17 Score=178.44 Aligned_cols=104 Identities=17% Similarity=0.107 Sum_probs=85.4
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCCCC
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTE 451 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~ 451 (660)
+|+|+||||+|||||+|+++|+++++.+.|..+.++ ++|+.+|+||+++.++|++++++|++|||+|++|+|++..+
T Consensus 102 ~P~iaIPTTagTgse~t~~avi~~~~~~~k~~~~~~-~~P~~ai~Dp~l~~t~P~~~~a~~~~Dal~h~~E~~~s~~~-- 178 (351)
T cd08170 102 APVVIVPTIASTDAPTSALSVIYTDDGEFEEYLFLP-RNPDLVLVDTDVIAKAPVRFLVAGIGDALATYFEARACVRS-- 178 (351)
T ss_pred CCEEEeCCccccCcccccceEEECCCCceeeeeecc-CCCCEEEEChHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 699999999999999999999999887777776655 78999999999999999999999999999999999987521
Q ss_pred CCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhc
Q psy2427 452 RTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVY 492 (660)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~ 492 (660)
...+++++.....+..+..+.++.+.+
T Consensus 179 --------------~~~~~~~~~~~~~~~~~a~~~~~~l~~ 205 (351)
T cd08170 179 --------------GGPNMFGGKPTLAALALAKLCYETLLE 205 (351)
T ss_pred --------------cCccccCcchhHHHHHHHHHHHHHHHH
Confidence 134567766666666666555555543
|
Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. |
| >cd08172 GlyDH-like1 Glycerol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-17 Score=177.30 Aligned_cols=122 Identities=17% Similarity=-0.007 Sum_probs=101.7
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCCCC
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTE 451 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~ 451 (660)
+|+|+||||+|||||+|+++|+++++.+.|.... ...+|+.+|+||+++.++|++++++|++|||+||+|+|++...+
T Consensus 101 ~p~i~VPTT~gtgse~t~~avi~~~~~~~k~~~~-~~~~P~~vi~Dp~l~~tlP~~~~~sg~~Dal~h~~E~~~s~~~~- 178 (347)
T cd08172 101 VPVITVPTLAATCAAWTPLSVIYDEDGAFLRVEY-LKRAPELVLVDPDLIANSPVRYLVAGIGDTLAKWYEASAISRSL- 178 (347)
T ss_pred CCEEEecCccccCcccceeEEEEcCCCcEeeecc-ccCCCCEEEECHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 6999999999999999999999998766666543 55779999999999999999999999999999999999985210
Q ss_pred CCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHH----HHHhcCCCC---HHHHHHHHHHHHHH
Q psy2427 452 RTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYF----KRAVYNQDD---LEARSHMHLASAMA 510 (660)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l----~~~~~~~~~---~~ar~~~~~as~~a 510 (660)
..+|+++.+|.++++.+.+.+ +++++|++| .++|+++..+.++.
T Consensus 179 ---------------~~~~~~~~~a~~~~~~~~~~L~~~~~~a~~~~~~~~~~~a~~~~~r~~~~~ 229 (347)
T cd08172 179 ---------------DSLDLFVQLALQAAKLCRDLLLRDSEQALQDMAAGEVTPAFEDVVDTIIAL 229 (347)
T ss_pred ---------------ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 157777777777776665555 689998887 79999999988753
|
Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. |
| >COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-17 Score=172.05 Aligned_cols=101 Identities=43% Similarity=0.660 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCc
Q psy2427 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPH 334 (660)
Q Consensus 255 ~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~H 334 (660)
++|.+|++++++|.++|++++.|+.|.++|++|++|++++|++|+|+++|+.|+|+|+|++.++ +||
T Consensus 209 ~tD~~A~~ai~li~~~L~~a~~~g~d~eARe~m~~aa~lAGmAF~na~lG~~HalaH~lG~~~~-------------~pH 275 (377)
T COG1454 209 ITDALALEAIKLIFEYLPRAVADGDDLEAREKMHLAATLAGMAFANAGLGLVHALAHPLGALFH-------------IPH 275 (377)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcchhHHHHHHhhcccccccc-------------Cch
Confidence 7899999999999999999999999999999999999999999999999999999999998764 999
Q ss_pred hhHHHhhHHHHHHhhhcCCchhhhhHhhhhcccc
Q psy2427 335 GLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 368 (660)
Q Consensus 335 G~avai~l~~~l~~~~~~~~er~~~la~~lg~~~ 368 (660)
|.++|++||+|++||.+..++|+.++++.+|.+.
T Consensus 276 G~~nAillP~V~~fN~~~a~~r~a~iA~~lg~~~ 309 (377)
T COG1454 276 GLANAILLPYVIRFNAEAAPERYARIARALGLPG 309 (377)
T ss_pred HHHhhHhhHHHHHHhhhhhHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999863
|
|
| >PRK15138 aldehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-16 Score=170.17 Aligned_cols=76 Identities=25% Similarity=0.423 Sum_probs=72.9
Q ss_pred ccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH
Q psy2427 369 SRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF 444 (660)
Q Consensus 369 ~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~ 444 (660)
.+.+|+|+||||+|||||+|+++|+++++.+.|..+.++.++|+++|+||+++.++|++++++|++|||+||+|+|
T Consensus 128 ~~~~P~iaVPTTaGTGSE~t~~avit~~~~~~K~~~~~~~~~P~~aivDP~l~~~~P~~~taatg~DAl~haiE~y 203 (387)
T PRK15138 128 KSAIPMGSVLTLPATGSESNAGAVISRKTTGDKQAFHSPHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQY 203 (387)
T ss_pred CCCCCEEEEecCCccccccCCCEEEEecCCCeeeeecCcchheeEEEECcHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999889999999999999999999999999999999999999999999998
|
|
| >cd08550 GlyDH-like Glycerol_dehydrogenase-like | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-17 Score=173.59 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=90.4
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCCCC
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTE 451 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~ 451 (660)
+|+|+||||+|||||+|..+|+++++.+.|..... ..+|+.+|+||+++.++|++++++|++|+|+||+|+|++..++
T Consensus 102 ~p~i~VPTtagtgse~t~~avi~~~~~~~k~~~~~-~~~P~~~i~Dp~l~~t~P~~~~a~g~~Dal~h~~E~~~s~~~~- 179 (349)
T cd08550 102 KPIVIVPTIASTCAASSNLSVIYSDDGEFARYDFQ-KRNPDLVLVDTEVIAQSPAEYLWSGIADALAKWYEAEAVIRGR- 179 (349)
T ss_pred CCEEEeCCccccCccccceEEEEcCCCceeeeeec-CCCCCEEEEChHHHHhCCHHHHHHhHHHHHHHHHHHHHHhhcc-
Confidence 69999999999999999999999987776766555 5789999999999999999999999999999999999985210
Q ss_pred CCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHh
Q psy2427 452 RTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAV 491 (660)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~ 491 (660)
| ..+|+++.+|.++++.+.+++.+-.
T Consensus 180 --~------------~~~~~~~~~a~~~~~~~~~~l~~~~ 205 (349)
T cd08550 180 --E------------MNGSLAPLMALAVAEACTPTLLEYG 205 (349)
T ss_pred --c------------ccccchhHHHHHHHHHHHHHHHHHH
Confidence 0 2358899999999999999997663
|
Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now. |
| >KOG3857|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-16 Score=158.62 Aligned_cols=125 Identities=62% Similarity=1.029 Sum_probs=120.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCC
Q psy2427 243 PLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHP 322 (660)
Q Consensus 243 ~~~~~~~~~~~~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~ 322 (660)
|..||.|+.+||++|.++.+++++|.+++.+++.||+|.++|.+|++|+.++|++|+|+|.+++|+++|+|++....|.+
T Consensus 263 p~~rp~yqgsNPIsD~wA~~al~li~kyl~rAv~~p~d~eARt~M~~As~~aG~gFgNAgvhlcHglsypisg~vk~~ka 342 (465)
T KOG3857|consen 263 PGVRPLYQGSNPISDAWALKALELINKYLVRAVKDPKDEEARTDMHYASYLAGMGFGNAGVHLCHGLSYPISGQVKSYKA 342 (465)
T ss_pred CccccccccCCchHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhccccCcccccceeeccccccCccccccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred CCCCCCCCCcCchhHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 323 AGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 323 ~~~~~~~~~~~HG~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
-.|+.+|.-+|||.+|++++|++.+|+.+..|+|..+.++.+|.+
T Consensus 343 kdy~~dh~liPHGlsv~v~~pavfeft~~~cP~rhl~aaq~LGa~ 387 (465)
T KOG3857|consen 343 KDYYHDHNLIPHGLSVAVLLPAVFEFTAAACPDRHLEAAQRLGAI 387 (465)
T ss_pred cccccccccCCcchhhhhhhhhhhhhccccCchhHHHHHHHhhhH
Confidence 889889999999999999999999999999999999999999965
|
|
| >cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-15 Score=163.77 Aligned_cols=77 Identities=35% Similarity=0.523 Sum_probs=74.3
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhc
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTA 446 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~ 446 (660)
+.+|+|+||||+|||||+|+++|+++++.+.|..+.++.++|+++|+||+++.++|++++++|++|||+||+|+|++
T Consensus 125 ~~~p~i~VPTtagTGsE~t~~avi~d~~~~~K~~~~~~~~~P~~~i~Dp~l~~t~P~~~~~a~g~Dal~h~iE~~~s 201 (374)
T cd08189 125 PLPPLFAIPTTAGTGSEVTIAAVISDPETHEKYAISDPRLLPKAAALDPRLTLGLPPHITAATGMDALTHAVEAYIG 201 (374)
T ss_pred CCCCEEEEECCCccccccCCeEEEEecCCCeeEEEeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 45799999999999999999999999988899999999999999999999999999999999999999999999998
|
Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. |
| >cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-15 Score=165.29 Aligned_cols=78 Identities=29% Similarity=0.363 Sum_probs=75.1
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
..+|+|+||||+|||||+|+++|+++++.+.|..+.++.++|+.+|+||+++.++|++++++|++|||+||+|+|++.
T Consensus 126 ~~~P~i~IPTtagTgSe~t~~avi~~~~~~~K~~~~~~~~~P~~~ivDp~l~~~~P~~~~a~~~~Dal~h~~E~~~s~ 203 (377)
T cd08176 126 PAVPIVAINTTAGTASEVTINYVITDEERKVKMVIVDPNDIPIVAVNDPELMVGMPPGLTAATGMDALTHAIEAYVST 203 (377)
T ss_pred CCCCEEEeCCCCcchhccCCcEEEEEcCCCceeEEeCccccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 457999999999999999999999999889999999999999999999999999999999999999999999999993
|
Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to |
| >cd08171 GlyDH-like2 Glycerol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.5e-16 Score=164.64 Aligned_cols=102 Identities=14% Similarity=-0.034 Sum_probs=90.0
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCCCC
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTE 451 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~ 451 (660)
+|+|+||||+|||||+|+++|+++++.+.|..+ +..++|+++|+||+++.++|++++++|++|||+||+|+|++...
T Consensus 103 ~p~i~VPTt~gtgse~t~~avi~~~~~~~K~~~-~~~~~P~~~i~Dp~l~~~~P~~~~~~g~~Dal~ha~E~y~s~~~-- 179 (345)
T cd08171 103 KPVFTFPTIASNCAAVTAVSVVYNDDGSFKEYY-FFKNPPVHCFIDTEIIAEAPEKYLWAGIGDTLAKYYEVTFSARG-- 179 (345)
T ss_pred CCEEEecCccccCccccceEEEEcCCCceeecc-cccCCCCEEEECHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 699999999999999999999999877777744 67889999999999999999999999999999999999999620
Q ss_pred CCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHh
Q psy2427 452 RTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAV 491 (660)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~ 491 (660)
...+.++.+|.++++.+.+.+.+..
T Consensus 180 ---------------~~~~~~~~~a~~~~~~~~~~l~~~l 204 (345)
T cd08171 180 ---------------EKLDHTNLLGVTISRMCSEPLLEYG 204 (345)
T ss_pred ---------------cccchhHHHHHHHHHHHHHHHHHHH
Confidence 1224899999999999999887764
|
Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. |
| >PRK10586 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-15 Score=162.95 Aligned_cols=131 Identities=19% Similarity=0.142 Sum_probs=102.6
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCc-eeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKA-KTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~-k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~ 449 (660)
.+|+|+||||++||||+|+++|+++++... |..+..+ .|+.+|+||+++.++|++++++|++|+|+||+|+|++...
T Consensus 110 ~~p~i~vPT~a~t~s~~s~~avi~~~~~~~~~~~~~~~--~p~~~i~D~~l~~~~P~~~~~ag~~Dal~~~~Ea~~~~~~ 187 (362)
T PRK10586 110 GLPFVAIPTIAATCAAWTPLSVWYNDAGQALHFEIFDD--ANFLVLVEPRIILNAPQEYLLAGIGDTLAKWYEAVVLAPQ 187 (362)
T ss_pred CCCEEEEeCCccccccccCceEEECCCCCeeeecccCC--CCCEEEEChHHHhcCCHHHHHHHHHHHHHHHHHHHHcccc
Confidence 369999999999999999999999986432 3333333 3999999999999999999999999999999999987421
Q ss_pred CCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHH----HHHhcCCCC---HHHHHHHHHHHHHHhHhhhcccc
Q psy2427 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYF----KRAVYNQDD---LEARSHMHLASAMAGVGFGNAGV 519 (660)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l----~~~~~~~~~---~~ar~~~~~as~~ag~~~~~~g~ 519 (660)
...+++++.++.++.+++.+.+ .++++|..+ .++-+++..+.++.+-..+..|.
T Consensus 188 ----------------~~~~~~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vv~a~i~~~g~~s~~g~ 248 (362)
T PRK10586 188 ----------------PETLPLTVRLGINNALAIRDVLLNSSEQALADQQNGQLTQDFCDVVDAIIAGGGMVGGLGE 248 (362)
T ss_pred ----------------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhhhccc
Confidence 1455677887777777666666 778776544 46778899999987766654443
|
|
| >PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.8e-16 Score=167.50 Aligned_cols=78 Identities=36% Similarity=0.488 Sum_probs=72.7
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
+.+|.|+||||+|||||+|+++|+++++.+.|.++.++.++|+.+|+||+++.++|++++++|++|||+||+|+|++.
T Consensus 120 ~~~p~i~IPTt~gtGsE~t~~avi~d~~~~~k~~~~~~~~~P~~~i~Dp~l~~~lP~~~~~~~~~dal~haiE~~~s~ 197 (366)
T PF00465_consen 120 PALPLIAIPTTAGTGSEVTPYAVIYDEEGGRKLSIRSPKLYPDAAILDPELTATLPPRLTASGGLDALAHAIEAYLSP 197 (366)
T ss_dssp --SEEEEEESSSSSSGCCSSEEEEEETTTTEEEEEEEGGGS-SEEEEEGGGGTTS-HHHHHHHHHHHHHHHHHHHHST
T ss_pred CCCcEEEeeCCccccccccccccccccccceeccccCcccCcceeEecHHhhcCCCHHHHhhhHHHHHHHHHHHHhhc
Confidence 448999999999999999999999999999999999999999999999999999999999999999999999999996
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A .... |
| >cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.1e-15 Score=158.82 Aligned_cols=78 Identities=37% Similarity=0.558 Sum_probs=75.0
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
+.+|.|+||||+|||||+|+++|+++++.+.|.++.++.++|+.+|+||+++.++|++++++|++|||+||+|+|++.
T Consensus 121 ~~~p~i~VPTt~gtgse~t~~avi~d~~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~~a~~~Dal~h~~E~~~s~ 198 (370)
T cd08551 121 PALPLIAIPTTAGTGSEVTPFAVITDEETGEKYGIASPELLPDVAILDPELTYTLPPALTAATGMDALTHAIEAYVSR 198 (370)
T ss_pred CCCCEEEecCCCcchhhcCCeEEEEECCCCeeEEEeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 457999999999999999999999999889999999999999999999999999999999999999999999999993
|
Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H. |
| >cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-15 Score=161.89 Aligned_cols=75 Identities=31% Similarity=0.507 Sum_probs=72.1
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF 444 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~ 444 (660)
+.+|+|+||||+|||||+|+++|+++++.+.|..+.++.++|+++|+||+++.++|++++++|++|||+||+|+|
T Consensus 125 ~~~p~iaIPTtagTGSE~t~~avi~~~~~~~K~~~~~~~~~P~~ai~Dp~l~~~~P~~~~a~tg~Dal~ha~E~y 199 (375)
T cd08179 125 NKARFCAIPSTSGTATEVTAFSVITDYEKGIKYPLADFEITPDVAIVDPELTETMPPKLTAETGMDALTHAIEAY 199 (375)
T ss_pred CCCCEEEeCCCCchhHhhCCeEEEEeCCCCeEEEecCCcccCCEEEEChhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999889999999999999999999999999999999999999999999987
|
NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold. |
| >cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-14 Score=156.92 Aligned_cols=109 Identities=37% Similarity=0.623 Sum_probs=101.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCC
Q psy2427 246 RPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGY 325 (660)
Q Consensus 246 ~~~~~~~~~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~ 325 (660)
++.+...+|++|.+++++++++.++++++++|++|.++|++|++|++++|++++++|++++|+|+|+|++.++
T Consensus 208 ~~~~~~~~p~sd~~a~~a~~li~~~l~~a~~~~~~~~ar~~~~~as~laG~a~~~~~~g~~Hal~~~l~~~~~------- 280 (386)
T cd08191 208 DHVYSGKNALTDLFAREAIRLIGRSLPRAVRDGDDLEARTDMMLAALLAGLAFGTAGTAAVHALQYPVGALTH------- 280 (386)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhhhcCcC-------
Confidence 3444567999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred CCCCCCcCchhHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 326 SDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 326 ~~~~~~~~HG~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
++||+++|+++|++++||.+..++|+.++++.++..
T Consensus 281 ------i~HG~~~aillp~v~~~n~~~~~~k~~~~a~~~~~~ 316 (386)
T cd08191 281 ------TSHGFGVAALLPYVMRFNLPARREEFAEIGRVLGVA 316 (386)
T ss_pred ------CChHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999988863
|
6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. |
| >cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-14 Score=156.83 Aligned_cols=120 Identities=66% Similarity=1.169 Sum_probs=104.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCC
Q psy2427 248 AYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSD 327 (660)
Q Consensus 248 ~~~~~~~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~ 327 (660)
.+...+|++|.+++++++++.+++++++.|+.|.++|++|++|++++|++++++|++++|+|+|+|++.+++|....|.-
T Consensus 221 ~~~~~~p~sd~~a~~ai~li~~~l~~a~~~~~d~~AR~~~~~As~laG~a~~~~g~~~~Hai~~~l~~~~~~~~~~~~~~ 300 (414)
T cd08190 221 AYQGSNPISDIWSLQALRIVGKYLRRAVADPDDLEARSQMHLASTFAGIGFGNAGVHLCHGMSYPIAGLVKDYKAPDYPV 300 (414)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhCcchhhhhHhccHhhcCcCccccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999764321112222
Q ss_pred CCCCcCchhHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 328 DHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 328 ~~~~~~HG~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
.|++++||+++++++|++++|+.+..++|+.++++.+|.+
T Consensus 301 ~~~~ipHG~~~ai~lp~vl~~n~~~~~~k~~~~a~~lg~~ 340 (414)
T cd08190 301 DHPLVPHGLSVVVTAPAVFRFTAPACPERHLEAAEILGAD 340 (414)
T ss_pred cCCCCChHHHHHHHHHHHHHhhhhhCHHHHHHHHHHhCCC
Confidence 2345999999999999999999999999999999988753
|
Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT |
| >PRK15454 ethanol dehydrogenase EutG; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-14 Score=154.26 Aligned_cols=98 Identities=36% Similarity=0.517 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
+|.+++++++++.++++++++|++|.++|++|++|++++|++++++|++..|+|+|+|++.++ +|||
T Consensus 230 td~~a~~ai~li~~~l~~a~~~~~d~~AR~~m~~As~laG~a~~~~g~g~~Hal~h~lg~~~~-------------ipHG 296 (395)
T PRK15454 230 TDSLAIGAIAMIGKSLPKAVGYGHDLAARESMLLASCMAGMAFSSAGLGLCHAMAHQPGAALH-------------IPHG 296 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcccchHHHhhhhhhccCCC-------------CCcH
Confidence 478999999999999999999999999999999999999999999999999999999998653 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhcc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGA 366 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~ 366 (660)
+++|+++|++++||.+..++|+.++++.++.
T Consensus 297 ~~~aillP~v~~~n~~~~~~k~~~la~~l~~ 327 (395)
T PRK15454 297 LANAMLLPTVMEFNRMVCRERFSQIGRALRT 327 (395)
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHhCC
Confidence 9999999999999999999999999998874
|
|
| >cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-14 Score=151.32 Aligned_cols=98 Identities=27% Similarity=0.448 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.++++++++||+|.++|++|++|++++|++++++|+|++|+|+|+|++.++ ++||
T Consensus 180 s~~~a~~ai~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~a~~~~~~g~~H~l~h~l~~~~~-------------~~HG 246 (337)
T cd08177 180 VDLLAEEGIRALAEALPRIKADPDDLDARLDALYGAWLCGTCLGSVGMGLSHKLGHVLGGTFG-------------LPHA 246 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccHHHHHHhhCccccCcC-------------CCcH
Confidence 578999999999999999999999999999999999999999999999999999999998754 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhcc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGA 366 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~ 366 (660)
+++|+++|++++|+.+..++++.++++.++.
T Consensus 247 ~~~ai~lp~vl~~~~~~~~~~~~~~a~~l~~ 277 (337)
T cd08177 247 ETSCIVLPHVLAFNAPAAPEALARLARALGL 277 (337)
T ss_pred HHHHHHHHHHHHhcCcCCHHHHHHHHHHhCc
Confidence 9999999999999999999999999998875
|
Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p- |
| >cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.4e-15 Score=159.15 Aligned_cols=75 Identities=32% Similarity=0.517 Sum_probs=72.2
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF 444 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~ 444 (660)
..+|+|+||||+|||||+|+++|+++++.+.|..+.++.++|+.+|+||+++.++|++++++|++|||+|++|+|
T Consensus 127 ~~~P~iaIPTTagTGsE~t~~avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~aatg~Dal~h~~E~~ 201 (382)
T cd08187 127 KALPVGTVLTLAATGSEMNGGAVITNEETKEKLGFGSPLLRPKFSILDPELTYTLPKYQTANGIVDIFSHVMEQY 201 (382)
T ss_pred CCCCEEEEeCCCchhhccCCCEEEeccccCccccccCCCcCceEEEEChHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999989999999999999999999999999999999999999999999976
|
The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases. |
| >PRK09860 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.3e-14 Score=153.36 Aligned_cols=99 Identities=26% Similarity=0.409 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCc
Q psy2427 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPH 334 (660)
Q Consensus 255 ~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~H 334 (660)
++|.+++++++++.++++++++|++|.++|++|++|++++|++++++|+++.|+|+|+|++.++ +||
T Consensus 211 ~sd~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m~~as~laG~a~~~~g~g~~Hal~h~lg~~~~-------------ipH 277 (383)
T PRK09860 211 ITDACALKAVTMIAENLPLAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYN-------------LPH 277 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHccccHHHHHHHhhHHhhCcC-------------CCc
Confidence 6889999999999999999999999999999999999999999999999999999999998653 999
Q ss_pred hhHHHhhHHHHHHhhhcCCchhhhhHhhhhcc
Q psy2427 335 GLSVVMSAPAVFNFTAASSPERHIEAAELLGA 366 (660)
Q Consensus 335 G~avai~l~~~l~~~~~~~~er~~~la~~lg~ 366 (660)
|.++|+++|++++|+.+..++|+.++++.+|.
T Consensus 278 G~~~ai~lP~vl~~n~~~~~~k~~~~a~~~g~ 309 (383)
T PRK09860 278 GVCNAVLLPHVQVFNSKVAAARLRDCAAAMGV 309 (383)
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHhCC
Confidence 99999999999999999999999999998885
|
|
| >cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-14 Score=153.82 Aligned_cols=77 Identities=35% Similarity=0.531 Sum_probs=74.4
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhc
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTA 446 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~ 446 (660)
+.+|.|+||||+|||||+|+++|+++++.+.|..+.++.++|+.+|+||+++.++|++++++|++|||+|++|+|++
T Consensus 108 ~~~p~i~VPTtagtgse~t~~avi~~~~~~~k~~~~~~~~~p~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s 184 (332)
T cd08180 108 KKPLFIAIPTTSGTGSEVTSFAVITDPETGVKYPLVDDELLPDIAILDPELVKTVPPAVTADTGMDVLTHALEAYVS 184 (332)
T ss_pred CCCCEEEeCCCCcchHhhCCeEEEEecCCCeeEEeeCCCccCCEEEECchhhccCCHHHHHHhHHHHHHHHHHHHHc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998
|
1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat |
| >cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.5e-14 Score=152.55 Aligned_cols=101 Identities=45% Similarity=0.665 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcC
Q psy2427 254 PVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIP 333 (660)
Q Consensus 254 ~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~ 333 (660)
|+++.+++++++++.++++++++|++|.++|++|++|++++|+++.++|++++|+|+|+|++.++ ++
T Consensus 205 p~td~~a~~ai~~i~~~l~~a~~~~~~~~ar~~~~~As~laG~a~~~~g~g~~Hal~h~l~~~~~-------------i~ 271 (376)
T cd08193 205 PLSDLLALEALRLLGANIPRAVKDGDDLEAREAMLLGAMYAGQAFANAPVAAVHALAYPLGGKFH-------------IP 271 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhhcCcC-------------CC
Confidence 37899999999999999999999999999999999999999999999999999999999998653 99
Q ss_pred chhHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 334 HGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 334 HG~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
||+++++++|++++|+.+..++++.++++.++..
T Consensus 272 HG~~~ai~lp~v~~~~~~~~~~~~~~l~~~l~~~ 305 (376)
T cd08193 272 HGLSNALVLPHVLRFNAPAAEERYAELADALGPD 305 (376)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999998853
|
5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene. |
| >cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.1e-14 Score=151.43 Aligned_cols=100 Identities=33% Similarity=0.468 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCc
Q psy2427 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPH 334 (660)
Q Consensus 255 ~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~H 334 (660)
+++.+++++++++.++++++++|++|.++|+.|++|++++|++++++|++.+|+|+|+|++.+ +++||
T Consensus 208 ~sd~~a~~a~~li~~~l~~a~~~~~~~~ar~~m~~as~laG~a~~~~~~g~~Hai~~~l~~~~------------~~ipH 275 (383)
T cd08186 208 YSILLAKEAVRLIAEYLPKALEEPDNLQARYWLLYASAIAGIAIDNGLLHLTHALEHPLSALK------------PDLPH 275 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHhcCchhcCC------------CCCCh
Confidence 578999999999999999999999999999999999999999999999999999999999862 12999
Q ss_pred hhHHHhhHHHHHHhhhcCCchhhhhHhhhhcc
Q psy2427 335 GLSVVMSAPAVFNFTAASSPERHIEAAELLGA 366 (660)
Q Consensus 335 G~avai~l~~~l~~~~~~~~er~~~la~~lg~ 366 (660)
|+++|+++|++++||.+..++++.++++.++.
T Consensus 276 G~~~aillp~vl~~n~~~~~~~~~~la~~~~~ 307 (383)
T cd08186 276 GAGLAILLPAVVKHIYPATPEILAELLRPLVP 307 (383)
T ss_pred HHHHHHHHHHHHHHhhhhCHHHHHHHHHHhCc
Confidence 99999999999999999999999999988874
|
Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover. |
| >TIGR02638 lactal_redase lactaldehyde reductase | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.5e-14 Score=151.99 Aligned_cols=98 Identities=34% Similarity=0.577 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.++++++++||+|.++|++|++|++++|++++++|+++.|+|+|+|++.++ ++||
T Consensus 212 sd~~a~~a~~li~~~l~~~~~~~~~~~aR~~l~~As~laG~a~~~~g~g~~Hal~~~l~~~~~-------------i~HG 278 (379)
T TIGR02638 212 TDMLHLKAIEIIARWLRSAVEGGKDLEAREQMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYN-------------TPHG 278 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhcCcC-------------CChH
Confidence 467899999999999999999999999999999999999999999999999999999998653 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhcc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGA 366 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~ 366 (660)
.++++++|++++|+.+..++++.++++.+|.
T Consensus 279 ~a~ai~lp~vl~~~~~~~~~~~~~la~~~g~ 309 (379)
T TIGR02638 279 VANAILLPHVMEFNAEFTGEKYREIAKAMGV 309 (379)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999998885
|
This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase. |
| >TIGR01357 aroB 3-dehydroquinate synthase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-13 Score=146.52 Aligned_cols=192 Identities=18% Similarity=0.205 Sum_probs=136.8
Q ss_pred ccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH-------
Q psy2427 371 VKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL------- 441 (660)
Q Consensus 371 ~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~------- 441 (660)
..|.|+||||+ .++++++....++.+ +.|..+ .....|+.+|+||+++.++|++++++|++|++.|++
T Consensus 107 ~~p~i~VPTT~~a~~ds~~~~k~~i~~~--~~kn~~-~~~~~P~~viiDp~l~~tlP~~~~~~G~~d~ik~~~i~d~~~~ 183 (344)
T TIGR01357 107 GIRFIQVPTTLLAMVDSSVGGKTGINFP--GGKNLI-GTFYQPKAVLIDPDFLKTLPDRELRSGMAEVIKHGLIADAELF 183 (344)
T ss_pred CCCEEEecCchhheeccccCcceeEeCC--CCceEE-eeccCCceEEEcHHHHhhCCHHHHHhHHHHHHHHHhhCCHHHH
Confidence 46999999984 668899888777654 234433 555689999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCCCcccccCCCc--hHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccc
Q psy2427 442 ESFTALPYTERTPCPTDPLLRPAYQGQNP--VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGV 519 (660)
Q Consensus 442 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~ 519 (660)
+-+.... ..-.. ..+.+++...+.+........+|+.+...|.-+-+
T Consensus 184 ~~l~~~~-----------------~~~~~~~~~~~~~~~i~~~i~~k~~~~~~d~~e~~~r~~l~~-------------- 232 (344)
T TIGR01357 184 DELESND-----------------KLVLRLQELEHLEELIKRSIEVKASIVAEDEKESGLRAILNF-------------- 232 (344)
T ss_pred HHHHhhH-----------------HHHhccccHHHHHHHHHHHHHHHHHHhccCCCcccchHHhhc--------------
Confidence 5555420 00111 35678888888888888888899988888773221
Q ss_pred hhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Q psy2427 520 HLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADT 599 (660)
Q Consensus 520 ~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~ 599 (660)
.|.++|.|.... .| ..++||+++++.+.. ..++++.+|.- +.. ..++
T Consensus 233 --GHt~~Hale~~~------~~----~~~~HG~avaig~~~------------~~~la~~~~~~----~~~-----~~~~ 279 (344)
T TIGR01357 233 --GHTIGHAIEAEA------GY----GKIPHGEAVAIGMVC------------EAKLSERLGLL----PAE-----LIER 279 (344)
T ss_pred --chhHHHHHHhhc------CC----CCCChHHHHHHHHHH------------HHHHHHHhCCC----CHH-----HHHH
Confidence 288888887652 01 139999999876632 34455544421 111 2578
Q ss_pred HHHHHHHcCCCCcccccCCCCCcHHHHHHhh
Q psy2427 600 VRGYMDQMKIENGLKVLGYTSADIPALVTGT 630 (660)
Q Consensus 600 l~~l~~~lglp~~L~elGi~~~~i~~ia~~a 630 (660)
+.+|++++|+|+++++. ++.+++-+..+..
T Consensus 280 i~~~l~~~g~p~~~~~~-~~~~~~~~~l~~d 309 (344)
T TIGR01357 280 LVQLLKRYGLPTDLPKD-LDVDELLNAMLND 309 (344)
T ss_pred HHHHHHHcCCCccCCCC-CCHHHHHHHHHHh
Confidence 99999999999999875 6666655554443
|
This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids. |
| >cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.4e-14 Score=150.61 Aligned_cols=98 Identities=37% Similarity=0.518 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
+.+++++++++.++++++++|+.|.++|++|++|++++|+++.++|++++|+|+|+|++.++ ++||+
T Consensus 210 d~~a~~a~~~i~~~L~~~~~~~~~~~ar~~l~~As~laG~a~~~~~~g~~Hal~~~l~~~~~-------------i~HG~ 276 (377)
T cd08188 210 DLHALEAIRLIAANLPPAIANPTDLEARESMMLASLQAGLAFSNAILGAVHAMAHSLGGLLD-------------LPHGE 276 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhhhhhCcC-------------CChHH
Confidence 56899999999999999999999999999999999999999999999999999999998653 99999
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
++|+++|++++|+.+..++|+.++++.++.+
T Consensus 277 ~~ai~lp~vl~~~~~~~~~~~~~la~~~g~~ 307 (377)
T cd08188 277 CNAILLPHVMEFNYPAAPERYARIAEALGLD 307 (377)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHhCCC
Confidence 9999999999999999999999999988853
|
Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. |
| >TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-13 Score=147.28 Aligned_cols=96 Identities=27% Similarity=0.426 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
|.+++++++++.+++++++.|++|.++|++|++|++++|+++++++++++|+|+|+|++.++ ++||+
T Consensus 209 d~~a~~a~~li~~~L~~~~~~~~d~~aR~~~~~as~laG~a~~~~~~g~~Hal~~~l~~~~~-------------i~HG~ 275 (355)
T TIGR03405 209 RGLAIQAAADISRALPEVLAQPGDLALRSDMALAALKAGLAFSNTKTALAHSISYEMTLRHG-------------VPHGI 275 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHhhchhccCCC-------------CCcHH
Confidence 46899999999999999999999999999999999999999999999999999999987643 99999
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLG 365 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg 365 (660)
++++++|++++|+.+..++|+.++++.++
T Consensus 276 ~~aillp~vl~~n~~~~~~~~~~~~~~~g 304 (355)
T TIGR03405 276 ACSFTLPTVLRTALGRNPSRDALLQAVFG 304 (355)
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhC
Confidence 99999999999999999999988888776
|
2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis. |
| >PRK06203 aroB 3-dehydroquinate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-13 Score=145.58 Aligned_cols=191 Identities=14% Similarity=0.101 Sum_probs=122.5
Q ss_pred ccccccccccCCCCCcccceEEEeeCCC-CceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPL-KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~-~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~ 449 (660)
..|+|+|||| |+|++++..+.....+ ..|+.+.+....|+.+|+||+++.++|++++++|..|++-| +++..
T Consensus 137 gip~I~IPTT--lla~vda~~g~~~~v~~~~~kn~~g~~~~P~~vi~Dp~~l~tlP~~~~~~G~~e~iK~---~~i~d-- 209 (389)
T PRK06203 137 GVRLIRIPTT--VLAQNDSGVGVKNGINAFGKKNFLGTFAPPYAVINDFAFLTTLPDRDWRAGLAEAVKV---ALIKD-- 209 (389)
T ss_pred CCCEEEEcCC--CccccCCCccchhheecCCCceeeccccCCCEEEEcHHHHhhCCHHHHHhHHHHHHHH---HhhcC--
Confidence 3699999999 7777776555433222 24666677888999999999999999999999999999965 33331
Q ss_pred CCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH------HH--hHhh---hccc
Q psy2427 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASA------MA--GVGF---GNAG 518 (660)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~------~a--g~~~---~~~g 518 (660)
..-.+.+.++...... .+.+..+++.+.+. ++ +..+ .+.+
T Consensus 210 ---------------------------~~~~~~l~~~~~~~~~--~~~~~~~~~i~~~~~~k~~~v~~~~d~~e~g~r~~ 260 (389)
T PRK06203 210 ---------------------------AAFFDWLEAHAAALAA--RDPEAMEELIYRCAELHLEHIAGGGDPFEFGSSRP 260 (389)
T ss_pred ---------------------------HHHHHHHHHhHHHHhc--CCHHHHHHHHHHHHHHHHhhcccCCCccccCCcCc
Confidence 0011112222222211 13333444444332 22 2223 2345
Q ss_pred chhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhcc------CCHHHHHHHHHHhCCCCCC--CCHH
Q psy2427 519 VHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGADVSR--VKKA 590 (660)
Q Consensus 519 ~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~------~~~~~~~~ia~~lg~~~~~--~~~~ 590 (660)
++..|.++|+|++.. .| +++||++|++.++..++++.. ...+|+.++++.+|.+... .+.+
T Consensus 261 Ln~gHt~gHAlE~~~------~~-----~i~HGeAVAiGm~~~~~ls~~~g~~~~~~~~ri~~l~~~lglp~~~~~~~~~ 329 (389)
T PRK06203 261 LDFGHWSAHKLEQLT------NY-----ALRHGEAVAIGIALDSLYSYLLGLLSEAEAQRILALLRALGFPLYHPALATR 329 (389)
T ss_pred cccchhhhhhhhhcC------CC-----CCCcHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCccccccCcc
Confidence 788999999999842 12 699999999866666555543 4578888888888876432 2322
Q ss_pred HH-HHHHHHHHHHHHHHcC
Q psy2427 591 DA-GKLLADTVRGYMDQMK 608 (660)
Q Consensus 591 ~~-~~~~~~~l~~l~~~lg 608 (660)
++ ++.+++.++++.|..|
T Consensus 330 e~~~~~li~~~~~dkK~~~ 348 (389)
T PRK06203 330 DSKGRELLKGLEEFREHLG 348 (389)
T ss_pred cchHHHHHHHHHHHhhhcC
Confidence 22 4567788888877765
|
|
| >cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-13 Score=149.08 Aligned_cols=99 Identities=40% Similarity=0.627 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.++++++++|++|.++|++|++|++++|++++++|+++.|+|+|.|++.++ ++||
T Consensus 204 s~~~a~~a~~li~~~l~~a~~~~~~~~ar~~l~~as~laG~a~~~~~~g~~Hal~~~l~~~~~-------------i~HG 270 (375)
T cd08194 204 TDLFALSAIKLIGKNLRTAYLNPDNREAREEMMLGATEAGIAFSNASVALVHGMSRPIGALFH-------------VPHG 270 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhhCCC-------------CChH
Confidence 468999999999999999999999999999999999999999999999999999999988653 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
+++++++|++++|+.+..++|+.++++.+|..
T Consensus 271 ~~~ai~lp~v~~~~~~~~~~~~~~~a~~lg~~ 302 (375)
T cd08194 271 LSNAMLLPAVTEFSLPSAPERYADIARAMGEA 302 (375)
T ss_pred HHHHHHHHHHHHhhcccCHHHHHHHHHHhCCC
Confidence 99999999999999999999999999988863
|
Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. |
| >cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-13 Score=147.46 Aligned_cols=113 Identities=28% Similarity=0.452 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.++++++++|+.|.++|++|++|++++|++++++|++++|+|+|+|++.++ ++||
T Consensus 205 td~~a~~a~~~i~~~l~~a~~~~~~~~ar~~l~~as~laG~a~~~~~~g~~H~l~h~l~~~~~-------------i~HG 271 (367)
T cd08182 205 SRAYARRAIRLILENLPPLLDEPGNLEARAKMAEASLLAGLAISNTRTTAAHAISYPLTSRYG-------------VPHG 271 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHHhchhhcCCC-------------CChH
Confidence 467899999999999999999999999999999999999999999999999999999998653 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhh--Hhhhhccccc--------cccccccccccC
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIE--AAELLGADVS--------RVKKADAVPTTS 381 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~--la~~lg~~~~--------~~~~~i~vPTt~ 381 (660)
+++|+++|++++|+.+..++|+.+ +++.++.... .....+-+||+.
T Consensus 272 ~~~a~~lp~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~l~~~~glp~~L 327 (367)
T cd08182 272 LACALTLPALLRINLEALPEDLALEAILAAFGAPSAAEAAARIEALLKELGLPTRL 327 (367)
T ss_pred HHHHHHHHHHHHHhhhhChHhhhhHHHHHHhCcccHHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999988 7888876421 223345677754
|
Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria. |
| >cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD) | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-13 Score=144.37 Aligned_cols=96 Identities=33% Similarity=0.517 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
|.+++++++++.++++++++|+.|.++|++|++|++++|++++++|.+.+|+|+|+|++.++ ++||+
T Consensus 207 d~~a~~ai~l~~~~l~~~~~~~~~~~ar~~~~~as~laG~a~~~~g~~~~Hal~~~l~~~~~-------------~~HG~ 273 (357)
T cd08181 207 DMLAKEALELFKECLPKLLENELDEEAREKLMLASTLAGMVIAQTGTTLPHGLGYPLTYEKG-------------IPHGL 273 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcccchhhHhhcCccccCCC-------------CCcHH
Confidence 46889999999999999999999999999999999999999999999999999999988643 99999
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhcc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGA 366 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~ 366 (660)
++++++|++++|+.+..++++ ++++.+|.
T Consensus 274 ~~ai~lp~vl~~~~~~~~~~~-~~~~~~g~ 302 (357)
T cd08181 274 ANGIFLPEYLELAKEQIPEKV-FILKLLGF 302 (357)
T ss_pred HHHHHHHHHHHHHhhcCHHHH-HHHHHcCc
Confidence 999999999999999999999 88888775
|
1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion. |
| >cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD) | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-13 Score=145.90 Aligned_cols=99 Identities=35% Similarity=0.557 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.+++++++.++.|.++|++|++|++++|+++++++++++|+|+|+|++.++ ++||
T Consensus 213 sd~~a~~a~~~i~~~l~~a~~~~~d~~ar~~~~~as~laG~a~~~~~lg~~Hal~h~l~~~~~-------------i~HG 279 (398)
T cd08178 213 TDGLALQAIKLIFEYLPRSYKNGADPEAREKMHNAATIAGMAFANAFLGICHSMAHKLGAEFH-------------IPHG 279 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhhccCCC-------------CChH
Confidence 468999999999999999999999999999999999999999999999999999999998753 9999
Q ss_pred hHHHhhHHHHHHhhhcCC---------------chhhhhHhhhhccc
Q psy2427 336 LSVVMSAPAVFNFTAASS---------------PERHIEAAELLGAD 367 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~---------------~er~~~la~~lg~~ 367 (660)
+++|++||++++|+.+.. ++|+.++++.++.+
T Consensus 280 ~a~ai~lp~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~lg~~ 326 (398)
T cd08178 280 LANAILLPHVIRYNATDPPVKQAAFPQYKYPKAKERYAEIARFLGLP 326 (398)
T ss_pred HHHHHHHHHHHHhhcccccccccccccccccchHHHHHHHHHHcCCC
Confidence 999999999999997654 57888888888753
|
Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi |
| >cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.2e-13 Score=144.74 Aligned_cols=93 Identities=31% Similarity=0.443 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.+++++++.++.|.++|++|++|++++|+++.++|.+++|+|+|+|++.++ +|||
T Consensus 203 sd~~a~~ai~~i~~~l~~a~~~~~~~~ar~~~~~as~laG~a~~~~g~g~~Hai~h~lg~~~~-------------i~HG 269 (374)
T cd08183 203 TDALCRSGLPRGARALRRACENGEDAAARDDMALASLLGGIALANAGLGAVHGLAGPIGGLFD-------------APHG 269 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhchhhcCCC-------------CChH
Confidence 478999999999999999999999999999999999999999999999999999999998653 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHh
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAA 361 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la 361 (660)
+++++++|++++|+.+..++++.+++
T Consensus 270 ~a~ai~lp~vl~~~~~~~~~~~~~~~ 295 (374)
T cd08183 270 AICATLLPPVLAANIRALRQRGPGNP 295 (374)
T ss_pred HHHHHHHHHHHHHhhhhCchhhhhhh
Confidence 99999999999999998888766554
|
Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria. |
| >cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.1e-13 Score=143.63 Aligned_cols=96 Identities=36% Similarity=0.506 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.+++++++.|+.|.++|++|++|++++|++++++|++.+|+|+|+|++.+. +++||
T Consensus 212 s~~~a~~a~~li~~~l~~a~~~~~~~~ar~~~~~as~laG~a~~~~g~g~~Hai~~~l~~~~~------------~i~HG 279 (380)
T cd08185 212 SDMLALEAIELIAKYLPRAVKDGSDLEAREKMAWANTLGGMVEANSGCTSPHALEHALSGLHP------------DLPHG 279 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHcCccchhhhHhhChHhccCC------------CCChH
Confidence 368899999999999999999999999999999999999999999999999999999998641 39999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhh
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAEL 363 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~ 363 (660)
+++++++|++++|+.+..++++.++++.
T Consensus 280 ~~~ai~lp~vl~~~~~~~~~~~~~la~~ 307 (380)
T cd08185 280 AGLAMLSPAYFEFFARKAPEKFAFVARA 307 (380)
T ss_pred HHHHHHhHHHHHHhhhhCHHHHHHHHHh
Confidence 9999999999999999999999988763
|
Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea. |
| >cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.5e-13 Score=143.43 Aligned_cols=97 Identities=31% Similarity=0.422 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
++.+++++++++.+++++++.+++|.++|++|++|++++|+++.+ |+|.+|+|+|+|++.++ ++||
T Consensus 209 s~~~a~~a~~~~~~~l~~~~~~~~~~~ar~~~~~as~laG~a~~~-~~g~~Hal~h~l~~~~~-------------i~HG 274 (370)
T cd08192 209 ADGIALEGLRLISRHLERAVRDGGDLEARGGMMMAASMGAMAFQK-GLGAVHSLSHPLGALYN-------------LHHG 274 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhh-ccHHHHHhhhHHhhCCC-------------CChH
Confidence 467899999999999999999999999999999999999999987 99999999999998653 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhcc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGA 366 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~ 366 (660)
.++++++|++++|+.+..++|+.++++.++.
T Consensus 275 ~~~ai~lp~v~~~~~~~~~~k~~~~a~~~~~ 305 (370)
T cd08192 275 LLNAVLLPYVLRFNRPAIEEKIARLARALAM 305 (370)
T ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHHHHhCC
Confidence 9999999999999999999999999877653
|
NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm |
| >cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH) | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-13 Score=144.04 Aligned_cols=75 Identities=32% Similarity=0.396 Sum_probs=72.0
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
.+|.|+||||++||||+|+.+|+++++ +.|.++.++ ++|+.+|+||+++.++|++++++|++|||+|++|+|++.
T Consensus 104 ~~p~i~iPTt~~tgse~t~~avi~~~~-~~K~~~~~~-~~P~~vi~Dp~l~~t~P~~~~~~g~~Dal~h~~E~~~~~ 178 (332)
T cd07766 104 GLPIIIVPTTAATGSEVSPKAVITDKE-GGKTGFFYP-DNPDVVFVDTDITKGLPPRQVASGGVDALSHALEAYSTK 178 (332)
T ss_pred CCCEEEEeCCCchhhccCCeEEEEeCC-CceEEeccC-CccCEEEEChhhhhCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 579999999999999999999999998 889999988 999999999999999999999999999999999999984
|
Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc |
| >PRK10624 L-1,2-propanediol oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.5e-13 Score=143.85 Aligned_cols=74 Identities=31% Similarity=0.560 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHHhhhcCCchhhhhH
Q psy2427 281 LEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEA 360 (660)
Q Consensus 281 ~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~~~~~~~~er~~~l 360 (660)
.++|++|++|++++|++++++|+++.|+|+|+|++.++ +|||.++++++|++++|+.+..++|+.++
T Consensus 236 ~~aR~~~~~as~laG~a~~~~g~g~~Hal~h~l~~~~~-------------ipHG~~~ai~lp~vl~~~~~~~~~k~~~l 302 (382)
T PRK10624 236 KEAGEGMALGQYIAGMGFSNVGLGLVHGMAHPLGAFYN-------------TPHGVANAILLPHVMEYNADFTGEKYRDI 302 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHhhhHHhhCCC-------------CChHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 49999999999999999999999999999999998654 99999999999999999999999999999
Q ss_pred hhhhccc
Q psy2427 361 AELLGAD 367 (660)
Q Consensus 361 a~~lg~~ 367 (660)
++.+|..
T Consensus 303 a~~~g~~ 309 (382)
T PRK10624 303 ARAMGVK 309 (382)
T ss_pred HHHhCCC
Confidence 9988853
|
|
| >PRK09423 gldA glycerol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-13 Score=146.71 Aligned_cols=75 Identities=21% Similarity=0.149 Sum_probs=70.1
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
+|+|+||||++||||+|+.+|+++++.+.|....++. +|+.+|+||+++.++|++++++|++|||+||+|+|++.
T Consensus 109 ~p~i~IPTtagtgSe~t~~avi~~~~~~~k~~~~~~~-~P~~~i~Dp~l~~tlP~~~~~~g~~Dal~ha~E~y~s~ 183 (366)
T PRK09423 109 VPVVIVPTIASTDAPTSALSVIYTEEGEFERYLFLPK-NPDLVLVDTAIIAKAPARFLAAGIGDALATWFEARACS 183 (366)
T ss_pred CCEEEeCCccccCccccCceEEECCCCceeeeccccC-CCCEEEEchHHHHhCCHHHHHHhHHHHHHHHHHHHHHH
Confidence 6999999999999999999999998877777777665 79999999999999999999999999999999999985
|
|
| >COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.2e-13 Score=133.84 Aligned_cols=77 Identities=30% Similarity=0.448 Sum_probs=74.7
Q ss_pred cccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH
Q psy2427 368 VSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF 444 (660)
Q Consensus 368 ~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~ 444 (660)
..+-+|+.+|-|+++||||++..+||++.+++.|....++.++|.++|+||++++++|+|++++|.+|+|+|.+|.|
T Consensus 124 i~~alP~g~VLTLpATGSEmn~~aVIt~~~t~eK~~~~S~~v~PkFsvLDP~~tyTlP~~Q~a~G~vDa~sHv~EqY 200 (384)
T COG1979 124 IKDALPIGTVLTLPATGSEMNAGAVITNEETKEKLGFGSPLVFPKFSVLDPEVTYTLPKRQTANGVVDAFSHVFEQY 200 (384)
T ss_pred cccccccceEEEccccccccCCCceecccccccceeccCcccccceEEeCCcceeecChHHhhhhHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998
|
|
| >cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-13 Score=141.49 Aligned_cols=69 Identities=23% Similarity=0.137 Sum_probs=60.0
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
.+|+|+||||+|||++++..++++++ +.|.++. ..+|+.+|+||+++.++|++++++|++|| +|.|.+.
T Consensus 104 ~~p~i~IPTTagt~g~~~~~~~v~~~--g~K~~~~--~~~P~~viiDp~l~~slP~~~~~sg~~Da----le~~~~~ 172 (348)
T cd08175 104 GIPYISVPTAPSMDGYTSSGAPIILN--GFKKTYQ--AVAPIAIFADTDILANAPQRMIAAGFGDL----LGKYTAL 172 (348)
T ss_pred CCCEEEecCcccccCccCCCceEecC--Ccccccc--CCCCeEEEEChHHHHhCCHHHHHhhHHHH----HHhcccH
Confidence 36999999999999999988888775 6677773 46899999999999999999999999997 5778774
|
Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific. |
| >PRK00002 aroB 3-dehydroquinate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-11 Score=131.02 Aligned_cols=222 Identities=17% Similarity=0.137 Sum_probs=140.1
Q ss_pred ccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH--H-HHh
Q psy2427 371 VKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL--E-SFT 445 (660)
Q Consensus 371 ~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~--E-~~~ 445 (660)
..|+|+||||+ .++|+++..++++.+.. | .+......|+.+|+||+++.++|++++++|++|++.|++ + .|+
T Consensus 118 gip~i~IPTT~~s~~ds~~~~k~~i~~~~~--K-~~~g~~~~P~~vi~Dp~l~~tlP~~~~~~G~~d~ik~~~i~d~~~~ 194 (358)
T PRK00002 118 GIRFIQVPTTLLAQVDSSVGGKTGINHPLG--K-NLIGAFYQPKAVLIDLDFLKTLPERELRAGLAEVIKYGLIADPEFF 194 (358)
T ss_pred CCCEEEcCchhhhccccCcCCceecCCccc--c-eeeeecCCCceEEEcHHHHccCCHHHHHhhHHHHHHHHhhCCHHHH
Confidence 46999999995 55688888988876533 4 345667789999999999999999999999999999988 5 343
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccchhhhhh
Q psy2427 446 ALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGL 525 (660)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~~~H~l 525 (660)
..-.. +. +. ......+.+++...+.+........+|+.+...|.-+- .| |.+
T Consensus 195 ~~l~~--~~--------~~--~~~~~~~~~~~~i~~~i~~k~~~v~~d~~e~g~r~~ln------------~G----Ht~ 246 (358)
T PRK00002 195 EWLEA--NV--------DA--LLALDGEALEEAIARSCEIKADVVAADERESGLRALLN------------FG----HTF 246 (358)
T ss_pred HHHHh--hH--------HH--HhhcCHHHHHHHHHHHHHHHHHHHcCCCccccccHHHh------------cc----chH
Confidence 32000 00 00 00011345565555666666666667777776665542 23 666
Q ss_pred hccccCCccccCCCCCCCCCC-CCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2427 526 SYPISGNVKTFHPAGYSDDHP-IIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYM 604 (660)
Q Consensus 526 ~~~l~~~~~~~~~~~~~~~~~-~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~ 604 (660)
+|.|-... .+ .++||+++|+-+-.. ..++..+|.- +.. ..+++.+++
T Consensus 247 ~HalE~~~-----------~~~~~~HG~aVa~Gm~~~------------~~l~~~~g~~----~~~-----~~~~~~~~l 294 (358)
T PRK00002 247 GHAIEAET-----------GYGKWLHGEAVAIGMVMA------------ARLSERLGLL----SEA-----DAERIRALL 294 (358)
T ss_pred HHHHhccc-----------CCCCcChHHHHHHHHHHH------------HHHHHHhCCC----CHH-----HHHHHHHHH
Confidence 66555432 11 489998888544221 2344444431 111 257899999
Q ss_pred HHcCCCCcccccCCCCCcHHHHHHhhccC--CCC-------C-C-CCCccCCHHHHHHHHHHHh
Q psy2427 605 DQMKIENGLKVLGYTSADIPALVTGTLPQ--HRI-------T-K-LAPREQSEEDLANLFENSM 657 (660)
Q Consensus 605 ~~lglp~~L~elGi~~~~i~~ia~~a~~~--~~~-------~-~-~~P~~~t~e~i~~il~~a~ 657 (660)
+++|+|+... +++.+++-+.....-.. ++. . . .-...+++|++.+.++...
T Consensus 295 ~~~g~p~~~~--~~~~~~~~~~l~~dkk~~~~~~~~vl~~~ig~~~~~~~v~~~~l~~~~~~~~ 356 (358)
T PRK00002 295 ERAGLPTSLP--DLDAEALLEAMKRDKKVRGGKLRFVLLKGIGKAVIAEDVDDELLLAALEECL 356 (358)
T ss_pred HHcCCCCCCC--CCCHHHHHHHHHHhhhccCCCEEEEEecCCccEEEeCCCCHHHHHHHHHHHh
Confidence 9999999887 66766665555544221 110 0 0 0113589999998887543
|
|
| >PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=146.07 Aligned_cols=98 Identities=35% Similarity=0.536 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCc
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQ-DDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPH 334 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~-~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~H 334 (660)
++.+++++++++.+++++++.|+ +|.++|++|++|++++|+++++++.+++|+|+|+|++.++ ++|
T Consensus 674 sd~~a~~ai~li~~~L~~a~~~~~~d~~ar~~m~~As~laG~a~~~~~~g~~Hal~~~lg~~~~-------------v~H 740 (862)
T PRK13805 674 TDGLALQAIKLVFEYLPRSYKNGAKDPEAREKMHNASTIAGMAFANAFLGICHSMAHKLGAEFH-------------IPH 740 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhcCcC-------------CCh
Confidence 46899999999999999999999 9999999999999999999999999999999999998653 999
Q ss_pred hhHHHhhHHHHHHhhhcC--------------CchhhhhHhhhhcc
Q psy2427 335 GLSVVMSAPAVFNFTAAS--------------SPERHIEAAELLGA 366 (660)
Q Consensus 335 G~avai~l~~~l~~~~~~--------------~~er~~~la~~lg~ 366 (660)
|+++++++|++++|+.+. .++|+.++++.++.
T Consensus 741 G~~~aillP~vl~~n~~~~~~~~~~~~~~~~~~~~k~~~la~~l~~ 786 (862)
T PRK13805 741 GRANAILLPHVIRYNATDPPKQAAFPQYEYPRADERYAEIARHLGL 786 (862)
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccHHHHHHHHHHhCC
Confidence 999999999999999873 46899999988875
|
|
| >COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-11 Score=127.10 Aligned_cols=238 Identities=15% Similarity=0.121 Sum_probs=175.5
Q ss_pred ccccccccccCCCCCcccc-eEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCC
Q psy2427 371 VKKADAVPTTSGTGSETTG-VSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~-~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~ 449 (660)
.+|+|+|||+++||+.+|+ .+|++++++ .|.++... -|+.+|+|++++..+|.|++++|++|+|++|+|..-...+
T Consensus 108 ~~pfIsvPT~AS~Da~~Sp~aSv~~~~~g-~~~~~~~~--~P~~vivD~evI~~AP~r~L~AGiGD~lakw~e~~dw~~a 184 (360)
T COG0371 108 GLPFISVPTIASTDAITSPVASVIYNGKG-DKYSFLAK--APDAVIVDTEVIAAAPRRLLAAGIGDALAKWTEARDWKLA 184 (360)
T ss_pred CCCEEEecCccccccccCCceeeEEcCCC-ceeeeecC--CCcEEEEcHHHHHhChHHHHHhcchHhhhhHHHHHHHHHh
Confidence 3599999999999999999 899998865 45554333 4999999999999999999999999999999999743211
Q ss_pred CCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHH-HHHhHhhhcccchhhhhh
Q psy2427 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLE---ARSHMHLAS-AMAGVGFGNAGVHLCHGL 525 (660)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~---ar~~~~~as-~~ag~~~~~~g~~~~H~l 525 (660)
...+ ..........+++.|.+.+.++...+..+. ... +-+.+..++ .|+|++++++++|.+|++
T Consensus 185 ~~~~-----------~e~~~~~a~~la~~~~~~~~~~~~~i~~~~-~~~~~~~vealI~sg~~m~g~G~s~p~sgaeH~~ 252 (360)
T COG0371 185 HRLT-----------GEGYSEAAAALAKMCAKTLIEAAEEIKNAL-EEAVRPLVEALIESGTAMSGLGSSRPASGAEHAF 252 (360)
T ss_pred cccc-----------cchhhHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhcceEEeccCCCCccHHHHHH
Confidence 1110 011136677899999999999999887654 222 223444333 557788899999999999
Q ss_pred hccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHH-HHHHHH
Q psy2427 526 SYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLAD-TVRGYM 604 (660)
Q Consensus 526 ~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~-~l~~l~ 604 (660)
+|.|+.+.. ..|+..||+.||+-. .++.|..+..+++. .+ ++++|+
T Consensus 253 hh~Lt~l~~---------~~h~~lHGekVa~Gt-lv~~~L~~~~~~~~-----------------------~~~~i~~~~ 299 (360)
T COG0371 253 HHGLTMLPP---------ETHHALHGEKVAYGT-LVQLYLHGKNWEEI-----------------------EARKIRDFL 299 (360)
T ss_pred HHHHHhccc---------CCccccchhHHHHHH-HHHHHHhcCchhhh-----------------------hHHHHHHHH
Confidence 999999852 234799998777422 22333333322210 12 599999
Q ss_pred HHcCCCCcccccCCCCCcH---HHHHHhhccCCCCCCCCCccCCHHHHHHHHHHH
Q psy2427 605 DQMKIENGLKVLGYTSADI---PALVTGTLPQHRITKLAPREQSEEDLANLFENS 656 (660)
Q Consensus 605 ~~lglp~~L~elGi~~~~i---~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a 656 (660)
+++|+|++|+|+|++++++ ..+|..+......+...|+.+|+|.++++++..
T Consensus 300 ~~~glPttl~elgl~~~~~~eal~vAh~~r~~r~TIl~~~~~~t~e~~~~a~~~t 354 (360)
T COG0371 300 KKVGLPTTLAELGLDDDEVIEALTVAHAIRPERETILGMPFGLTPEAARAALEAT 354 (360)
T ss_pred HHcCCCcCHHHcCCCchhHHHHHHHHHHhCCCCcccccCCCCCCHHHHHHHHHHh
Confidence 9999999999999996664 455555555556667789999999999998854
|
|
| >PLN02834 3-dehydroquinate synthase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=126.46 Aligned_cols=212 Identities=17% Similarity=0.123 Sum_probs=125.5
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeecc--------CCCccccccccccccCCCchhhhhcchhhH-----
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANR--------ALKPTLGLIDPLHTLSLPERVTAYSGFDVF----- 437 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~--------~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal----- 437 (660)
..|+|+||||+ .+++ +...+.|..+.++ ...|+.+|+||+++.++|++++++|..|++
T Consensus 189 giplI~VPTTl--------lA~v-Dss~ggK~~i~~~~~KNlig~f~~P~~VivDp~~l~tlP~r~~~sG~~E~iK~~~i 259 (433)
T PLN02834 189 GVNFVQIPTTV--------MAQV-DSSVGGKTGVNHPLGKNMIGAFYQPQCVLIDTDTLATLPDRELASGIAEVVKYGLI 259 (433)
T ss_pred CCCEEEECCcC--------CeEE-ecCCCceeEEecCCcccccccccCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHHh
Confidence 46999999995 3444 4445667777654 568999999999999999999999999999
Q ss_pred --HHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhh
Q psy2427 438 --CHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFG 515 (660)
Q Consensus 438 --~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~ 515 (660)
..++|-+.... . .. ....+ ..+++...+.+...+.....|+.+...| ..-
T Consensus 260 ~d~~~fe~l~~~~---~----------~~-~~~~~--~~l~~~i~~s~~~K~~vv~~d~~e~G~r------------~~L 311 (433)
T PLN02834 260 RDAEFFEWQEANM---E----------KL-LARDP--GALAYAIKRSCENKAEVVSLDEKESGLR------------ATL 311 (433)
T ss_pred cCHHHHHHHHhhH---H----------hH-hccCH--HHHHHHHHHHHHHHHHhhcCCCcccchh------------hhh
Confidence 55555443310 0 00 01111 2233333333333333333343333222 122
Q ss_pred cccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHH
Q psy2427 516 NAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKL 595 (660)
Q Consensus 516 ~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~ 595 (660)
|.|-.++|+|+..+. | +.++||+++++-+-.. ..+++.+|.- +.+
T Consensus 312 n~GHT~gHAiE~~~~----------~----~~~~HGeaVaiGm~~~------------~~ls~~~G~~----~~~----- 356 (433)
T PLN02834 312 NLGHTFGHAIETGPG----------Y----GEWLHGEAVAAGTVMA------------ADMSYRLGWI----DMS----- 356 (433)
T ss_pred cCcHHHHHHHHhhcC----------C----CCCChHHHHHHHHHHH------------HHHHHHhcCC----CHH-----
Confidence 556667777776432 1 1489998888544322 2345555532 111
Q ss_pred HHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhcc--CCCCC-------CCCC---ccCCHHHHHHHHHH
Q psy2427 596 LADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLP--QHRIT-------KLAP---REQSEEDLANLFEN 655 (660)
Q Consensus 596 ~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~--~~~~~-------~~~P---~~~t~e~i~~il~~ 655 (660)
..+++.++++++|+|+++.+ +++.+++.......-. .+.+. -..+ ..++++++.+.+++
T Consensus 357 ~~~~i~~ll~~~gLP~~~~~-~~~~~~~~~~~~~dkK~~~~~i~~vl~~~~iG~~~~~~~~~~~~l~~~l~~ 427 (433)
T PLN02834 357 LVNRIFALLKRAKLPTNPPE-KMTVEMFKSLMAVDKKVADGLLRLILLKGELGNCVFTGDFDREALEETLRA 427 (433)
T ss_pred HHHHHHHHHHHcCCCCcccc-cCCHHHHHHHHhhcccccCCeEEEEEecCCCCCEEEeCCCCHHHHHHHHHH
Confidence 26789999999999999988 7776666555444311 11100 0111 35788888888764
|
|
| >cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-11 Score=130.59 Aligned_cols=195 Identities=16% Similarity=0.132 Sum_probs=125.2
Q ss_pred ccccccccccCC--CCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH---HHHh
Q psy2427 371 VKKADAVPTTSG--TGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL---ESFT 445 (660)
Q Consensus 371 ~~~~i~vPTt~~--tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~---E~~~ 445 (660)
..|+|+||||+. ++|+++....++.. ..|. .......|+.+|+||+++.++|++++++|.+|++.|++ +.++
T Consensus 111 gip~i~VPTT~~a~vds~~~~k~~i~~~--~~kn-~~g~~~~P~~viiD~~~l~tlP~~~~~~G~~d~ik~~~i~d~~~~ 187 (345)
T cd08195 111 GIDFIQIPTTLLAQVDSSVGGKTGVNHP--LGKN-LIGAFYQPKLVLIDTDFLKTLPEREFRSGLAEVIKYGLIADAELF 187 (345)
T ss_pred CCCeEEcchhHHHHhhccCCCcceecCC--CCCc-eecccCCCCEEEEehHHhhhCCHHHHHhHHHHHHHHHhhCCHHHH
Confidence 469999999963 36788877777554 2344 34556789999999999999999999999999999999 7776
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccchhhhhh
Q psy2427 446 ALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGL 525 (660)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~~~H~l 525 (660)
..-..+ .........+.+++...+.+........+|+.+...|.-+- ..|-+
T Consensus 188 ~~l~~~------------~~~~~~~~~~~~~~~i~~~i~~k~~~v~~d~~e~~~r~~ln----------------~GHt~ 239 (345)
T cd08195 188 EWLEEN------------KEAILALDPEALEEIIARSCEIKAEVVEQDEREKGLRAILN----------------FGHTF 239 (345)
T ss_pred HHHHhh------------HHHHhccCHHHHHHHHHHHHHHHHHHhccCccccCCceeec----------------Ccccc
Confidence 631000 00000112345565555566666666667777766665322 23666
Q ss_pred hccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy2427 526 SYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMD 605 (660)
Q Consensus 526 ~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~ 605 (660)
+|.|...+ .| ..++||+++++-+.... ++++.+|.- +.. ..+++.++++
T Consensus 240 gHalE~~~------~~----~~~~HGeaVaiGm~~~~------------~l~~~~g~~----~~~-----~~~~i~~~l~ 288 (345)
T cd08195 240 GHAIEALT------GY----GTLLHGEAVAIGMVAAA------------RLSERLGLL----SEE-----DLERIEKLLK 288 (345)
T ss_pred hHHHHhhc------CC----CCcchHHHHHHHHHHHH------------HHHHHhCCC----CHH-----HHHHHHHHHH
Confidence 66666542 01 15899988885443322 334444431 111 2578999999
Q ss_pred HcCCCCcccccCCCCCcHHHHHHh
Q psy2427 606 QMKIENGLKVLGYTSADIPALVTG 629 (660)
Q Consensus 606 ~lglp~~L~elGi~~~~i~~ia~~ 629 (660)
++|+|+.+ .+++.+++-+....
T Consensus 289 ~~g~p~~~--~~~~~~~~~~~l~~ 310 (345)
T cd08195 289 KLGLPTSL--PDLDAEDLLEAMKH 310 (345)
T ss_pred HcCCCCCC--CCCCHHHHHHHHHH
Confidence 99999988 45665555444433
|
Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol |
| >PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-11 Score=121.82 Aligned_cols=148 Identities=18% Similarity=0.119 Sum_probs=107.1
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH---hcCC
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF---TALP 448 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~---~~~~ 448 (660)
+|+++|||.+++++-+|+.+.+..+ .+.|.++. ++..|..++.|.+++.++|.+++++|.+|.+++..=.. ++.
T Consensus 100 ~p~isVPTa~S~DG~aS~~Asl~~~-~g~k~s~~-~a~~P~aIiaD~dIi~~AP~~l~~aG~GDli~k~tA~~DW~La~- 176 (250)
T PF13685_consen 100 IPFISVPTAASHDGFASPVASLTVD-DGFKVSYG-PAKAPIAIIADTDIIANAPRRLIAAGFGDLISKYTALADWKLAH- 176 (250)
T ss_dssp --EEEEES--SSGGGTSSEEEEEET--TEEEEE--E----SEEEEEHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCEEEeccccccccccCCCeeEEec-CCCceeec-CCCCCeEEEEeHHHHHhCCHHHHHhhHHHHHHhhhhHHHHHHHH-
Confidence 6999999999999999999999987 57777775 56679999999999999999999999999998876442 231
Q ss_pred CCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccchhhhhhhcc
Q psy2427 449 YTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYP 528 (660)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~~~H~l~~~ 528 (660)
.+.+.+++.+.+++.+.+...+++++|.++-+.++.+-.++|++.+....|..|.|+|.
T Consensus 177 ---------------------~~~e~~~~~~~~~v~~~~~~~~~~~~d~~~i~~L~~~L~~sg~amSRPaSGsEH~~sH~ 235 (250)
T PF13685_consen 177 ---------------------EYGEPYCEYAADMVEEALRNILKDPDDPEAIKALMEALIMSGLAMSRPASGSEHLFSHA 235 (250)
T ss_dssp ---------------------HTTS---HHHHHHHHHHHH---S-TT-HHHHHHHHHHHHHHHHHHSTTT-SHHHHHHHH
T ss_pred ---------------------HhhhhHHHHHHHHHHHHHHHHHcCcCcHHHHHHHHHHHHHcccccCCCccchhhHHHHH
Confidence 22345788888899999999998889999999999999999999988889999999998
Q ss_pred ccCCccccCCCCCCCCCCCCCcccccc
Q psy2427 529 ISGNVKTFHPAGYSDDHPIIPHGLSVV 555 (660)
Q Consensus 529 l~~~~~~~~~~~~~~~~~~~~HG~~~~ 555 (660)
|-..+ ...+||+.+|
T Consensus 236 le~~~------------~~~lHG~~Vg 250 (250)
T PF13685_consen 236 LEMLA------------KPALHGEQVG 250 (250)
T ss_dssp HHHH-------------S---HHHHHH
T ss_pred HHhhc------------CCCccccccC
Confidence 87652 2588998764
|
|
| >cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-10 Score=119.71 Aligned_cols=70 Identities=20% Similarity=0.160 Sum_probs=53.9
Q ss_pred ccccccccccCCCCCcccceEEEeeCC---CCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEP---LKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF 444 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~---~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~ 444 (660)
..|.|+||||+++.+. +++.... .+.|+.+......|+.+|+||+++.++|++++++|++|++.|++|.-
T Consensus 110 gip~I~IPTTlla~~d----a~i~~k~~vn~~~~kn~~g~~~~P~~vivDp~~l~tlP~~~~~aG~~d~ik~a~~~~ 182 (355)
T cd08197 110 GIRLVHIPTTLLAQSD----SVLSLKQAVNSTYGKNLIGLYYPPSFIFIDTRVLRTLPERQIRSGLCETVKNALAQE 182 (355)
T ss_pred CCCEEEecCccccccc----ccccCceeeeCCCCcceeecCCCCcEEEEcHHHHhhCCHHHHHhhHHHHHHHHHhcC
Confidence 4699999999754432 3333221 12344455777889999999999999999999999999999999884
|
2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway. |
| >cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=115.19 Aligned_cols=69 Identities=19% Similarity=0.116 Sum_probs=53.2
Q ss_pred ccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHH
Q psy2427 371 VKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALE 442 (660)
Q Consensus 371 ~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E 442 (660)
..|.|+||||+ +++|.+++...++.. .|+.+......|+.+|+||+++.++|++++++|++|++.|++=
T Consensus 109 gip~i~VPTTlla~~ds~~g~k~~i~~~---~~kn~~g~~~~P~~viiDp~~l~tlP~~~~~~G~~e~ik~~~~ 179 (344)
T cd08169 109 GIAFIRVPTTLLAQSDSGVGGKTGINLK---GGKNLLGTFYPPRAVFLDLRFLKTLPPRQILSGVAEIVKVALI 179 (344)
T ss_pred CCcEEEecCCcccccccCccceEeEecC---CCceeecccCCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHhh
Confidence 46999999984 445666654444432 3444455566799999999999999999999999999998773
|
Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne |
| >cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.2e-09 Score=112.08 Aligned_cols=69 Identities=16% Similarity=0.013 Sum_probs=59.3
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCC-ceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLK-AKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 441 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~-~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~ 441 (660)
..|+|.|||| ++|++++..+.....+. .|+.+......|+.+++||+++.++|++++.+|..|++=|++
T Consensus 125 Gip~I~IPTT--lla~vDs~~g~k~~vn~~~~knlvg~f~~P~~viiDp~~l~tlP~r~~~~G~aE~iK~~~ 194 (369)
T cd08198 125 GVRLIRIPTT--VLAQNDSGVGVKNGINAFGKKNFLGTFAPPYAVINDFAFLTTLPDRDKRAGLAEAVKVAL 194 (369)
T ss_pred CCCEEEECCC--chhhhCCCeeeeecccCCCCcceeccccCCCEEEEcHHHHhhCCHHHHHhhHHHHHHHHh
Confidence 4799999999 89999987777655443 577777888889999999999999999999999999996655
|
DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized. |
| >cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS) | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=109.92 Aligned_cols=68 Identities=21% Similarity=0.146 Sum_probs=52.2
Q ss_pred ccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH
Q psy2427 371 VKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 441 (660)
Q Consensus 371 ~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~ 441 (660)
..|+|+||||+ ..+++++....+..+ +.|..+ .....|..+|+||+++.++|++++++|.+|++-+++
T Consensus 114 g~p~i~VPTT~lA~vD~~~g~K~~i~~~--~~kn~i-g~~~~P~~viiD~~~l~tlP~~~~~~G~~e~ik~~~ 183 (354)
T cd08199 114 GTPYVRIPTTLVGLIDAGVGIKTGVNFG--GYKNRL-GAYHPPTLTLLDRSFLATLPERHIRNGLAEIIKMAV 183 (354)
T ss_pred CCCEEEEcCccceeeecCCCCceEEeCC--CCcccc-ccCCCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHH
Confidence 46999999975 367788866555544 333333 233459999999999999999999999999997654
|
2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s |
| >cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-09 Score=113.66 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=59.6
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHH
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES 443 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~ 443 (660)
.|.|+||||++||||+|..++++++ +.|....+ ..|+++|+||+++.++|++++++|++|+|+|+.+.
T Consensus 103 ~p~i~iPTT~~t~s~~s~~a~i~~~--~~k~~~~~--~~P~~vi~Dp~l~~tlP~~~~~sg~~Dal~k~~~~ 170 (339)
T cd08173 103 IPFISVPTAASHDGIASPRASIKGN--GKPISIKA--KPPLAVIADTGIIAKAPRRLLAAGCGDIISNYTAV 170 (339)
T ss_pred CCEEEecCcccCCcccCCceEEEeC--CceEEecC--CCCeEEEEcHHHHHhCCHHHHHHhHHHHHhhhHHH
Confidence 6999999999999999999999886 33554433 48999999999999999999999999999996544
|
Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph |
| >PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.4e-08 Score=109.27 Aligned_cols=175 Identities=18% Similarity=0.138 Sum_probs=119.6
Q ss_pred cccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH------
Q psy2427 370 RVKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL------ 441 (660)
Q Consensus 370 ~~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~------ 441 (660)
...+.|.||||. -.+|.+....-++... .|..+- .-..|..+++||+++.++|++.+.+|.++++-|++
T Consensus 262 RGi~~i~vPTTlla~vDssiggK~~vn~~~--~KNliG-~f~~P~~viiD~~~l~TLp~~~~~~G~aE~iK~~~~~~~~~ 338 (488)
T PRK13951 262 RGVGLSFYPTTLLAQVDASVGGKNAIDFAG--VKNVVG-TFRMPDYVIIDPTVTLSMDEGRFEEGVVEAFKMTILSGRGV 338 (488)
T ss_pred cCCCeEecCccHHHHHhcCCCCCeeeeCCC--CCceee-cCCCCCEEEEchHHhcCCCHHHHHhhHHHHHHHHHhcChhH
Confidence 356999999995 3355555544454442 333332 22349999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccchh
Q psy2427 442 ESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHL 521 (660)
Q Consensus 442 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~~ 521 (660)
+.| ... .. -.+...+.+.+...+.+...++.+.+|+.+.++|..+-+
T Consensus 339 ~~~-~~~---~~-------------~~~~~~~~~~~~i~~si~~k~~vv~~D~~e~~~R~~LN~---------------- 385 (488)
T PRK13951 339 ELF-DEP---EK-------------IEKRNLRVLSEMVKISVEEKARIVMEDPYDMGLRHALNL---------------- 385 (488)
T ss_pred Hhh-hCh---hh-------------hhcccHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHhc----------------
Confidence 333 210 00 012234556666667777788888899999999985443
Q ss_pred hhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Q psy2427 522 CHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVR 601 (660)
Q Consensus 522 ~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~ 601 (660)
.|.++|.|...+ +++||+++++.+...+ .++..+|.... + ..+++.
T Consensus 386 GHTigHalE~~~-------------~i~HG~AVa~gm~~~~------------~~s~~~g~~~~----~-----~~~~i~ 431 (488)
T PRK13951 386 GHTLGHVYEMLE-------------GVPHGIAVAWGIEKET------------MYLYRKGIVPK----E-----TMRWIV 431 (488)
T ss_pred cchHHHHHHhcc-------------CCccHHHHHHHHHHHH------------HHHHHhCCCCH----H-----HHHHHH
Confidence 388888888753 5999999987665443 35555664321 1 246788
Q ss_pred HHHHHcCCCCcccc
Q psy2427 602 GYMDQMKIENGLKV 615 (660)
Q Consensus 602 ~l~~~lglp~~L~e 615 (660)
+++++.+ |+.+.+
T Consensus 432 ~~l~~~~-p~~~~~ 444 (488)
T PRK13951 432 EKVKQIV-PIPVPS 444 (488)
T ss_pred HHHHHhC-CCCCCC
Confidence 8888874 887654
|
|
| >PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.2e-07 Score=101.74 Aligned_cols=69 Identities=19% Similarity=0.087 Sum_probs=56.4
Q ss_pred ccccccccccc--CCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH
Q psy2427 370 RVKKADAVPTT--SGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 441 (660)
Q Consensus 370 ~~~~~i~vPTt--~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~ 441 (660)
...|.|.|||| |.++|.+.....++....+...+.+. .|..+++|++++.++|.+.+.+|..|.+=|++
T Consensus 294 rGi~~i~vPTTllA~vDss~ggkt~in~~~gkn~ig~f~---~P~~V~iD~~~l~tlP~r~~~aG~gE~iK~~~ 364 (542)
T PRK14021 294 RGIRYVNCPTSLLAMVDASTGGKTGINTPQGKNLVGSFY---TPAGVLADTKTLATLPNDIFIEGLGEVAKSGF 364 (542)
T ss_pred cCCCEEEeCChHHhhhccccCCceEEECCCCceeEeeec---CCCEEEEeHHHHhhCCHHHHHhhHHHHHHHHh
Confidence 34799999996 78899999998888875443333333 59999999999999999999999999976664
|
|
| >cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-06 Score=92.42 Aligned_cols=68 Identities=19% Similarity=0.026 Sum_probs=50.6
Q ss_pred ccccccccccCC--CCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH
Q psy2427 371 VKKADAVPTTSG--TGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 441 (660)
Q Consensus 371 ~~~~i~vPTt~~--tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~ 441 (660)
..|.+.||||.. ..|.....+.++.. +.| -+......|+.+|+||+++.++|++.+.+|..+++=+++
T Consensus 102 gi~~i~iPTTlla~vds~ig~k~~vn~~--~~K-n~ig~f~~P~~viiD~~~l~tlp~~~~~~G~aEiiK~~~ 171 (346)
T cd08196 102 GVSWSFVPTTLLAQVDSCIGSKSSINVG--PYK-NLVGNFYPPREIYIDPPFLSTLDEKEIYSGLGEALKICY 171 (346)
T ss_pred CCCeEEecccHHHhhhccccccceecCC--CCC-cccccCCCCCEEEEchHHhccCCHHHHHhhHHHHHHHHH
Confidence 358899999984 34445555555543 334 345555669999999999999999999999999995544
|
DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized. |
| >COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=84.82 Aligned_cols=220 Identities=20% Similarity=0.141 Sum_probs=120.3
Q ss_pred ccccccccccCC--CCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHH---Hh
Q psy2427 371 VKKADAVPTTSG--TGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES---FT 445 (660)
Q Consensus 371 ~~~~i~vPTt~~--tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~---~~ 445 (660)
..++|.||||.= -+|.+-...-++....+...+.+++ |+.|++||+++.++|+|-+.+|..-.+=|++=. ++
T Consensus 120 Gv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~q---P~aVi~D~~~L~TLp~re~~~G~AEvIK~g~I~D~~~f 196 (360)
T COG0337 120 GVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQ---PKAVLIDTDFLKTLPPRELRAGMAEVIKYGLIADPEFF 196 (360)
T ss_pred CCCeEeccchHHHHhhcccccccccCCCCCcceeecccC---CcEEEEchHHhccCCHHHHHHhHHHHHHHhhhcCHHHH
Confidence 468999999852 2444444444554444444444444 999999999999999999999998887665521 11
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHhHhhhcccchhhhh
Q psy2427 446 ALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKR-AVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHG 524 (660)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~-~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~~~H~ 524 (660)
..- +.. ...+...++ . ..++|+.-++.-.+ ...|+.+...|.- =|-|-.+.|+
T Consensus 197 ~~L-------e~~---~~~l~~~~~---~-l~~~I~rs~~~Ka~VV~~De~E~G~R~~------------LN~GHT~GHA 250 (360)
T COG0337 197 DWL-------EEN---LDALLALDP---A-LEELIARSCQIKAEVVAQDEKESGLRAI------------LNLGHTFGHA 250 (360)
T ss_pred HHH-------HHH---HHHHHhcch---H-HHHHHHHHHHHhhHHhhcCccchhhHHH------------HhcchHHHHH
Confidence 100 000 000000001 0 11222222222112 2244444333332 2335556666
Q ss_pred hhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2427 525 LSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYM 604 (660)
Q Consensus 525 l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~ 604 (660)
++...+ |+ .++||+++++-+- + -.++++.+|.-.. . .++++++++
T Consensus 251 iE~~~~----------y~----~~~HGeAVaiGmv--~----------aa~ls~~lG~~~~----~-----~~~r~~~~L 295 (360)
T COG0337 251 IEALTG----------YG----KWLHGEAVAIGMV--M----------AARLSERLGLLDK----A-----DAERILNLL 295 (360)
T ss_pred HHHHhC----------CC----ccchHHHHHHHHH--H----------HHHHHHHhcCCCH----H-----HHHHHHHHH
Confidence 655333 21 3999988885442 2 2456777875322 1 268999999
Q ss_pred HHcCCCCcccccCCCCCcHHHHHHhhccCC-------------CCCCCCCcc-CCHHHHHHHHHHHhh
Q psy2427 605 DQMKIENGLKVLGYTSADIPALVTGTLPQH-------------RITKLAPRE-QSEEDLANLFENSMS 658 (660)
Q Consensus 605 ~~lglp~~L~elGi~~~~i~~ia~~a~~~~-------------~~~~~~P~~-~t~e~i~~il~~a~~ 658 (660)
++.|+|+++.+ ++ +.+.+.+....++ .+-+..... ++.+++.+.++....
T Consensus 296 ~~~gLP~~~~~-~~---~~~~l~~~m~~DKK~~~g~i~~vl~~~iG~~~~~~~v~~~~l~~~l~~~~~ 359 (360)
T COG0337 296 KRYGLPTSLPD-EL---DAEKLLEAMARDKKVLGGKIRFVLLKEIGKAEIAEGVDEELLLDALEEVHA 359 (360)
T ss_pred HHcCCCccCCC-cC---CHHHHHHHHhhcccccCCceEEEeehhcCceEeecCCCHHHHHHHHHHHhc
Confidence 99999999987 22 3333333322121 111111233 889999999887654
|
|
| >PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.8e-05 Score=75.98 Aligned_cols=69 Identities=28% Similarity=0.218 Sum_probs=47.9
Q ss_pred cccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH
Q psy2427 370 RVKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 441 (660)
Q Consensus 370 ~~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~ 441 (660)
...|.+.||||. -.+|.+..-.-++....+.-.+.+++ |+.|++||+++.++|++...+|..-++-|++
T Consensus 54 RGi~~i~vPTTLLa~vDssiGgK~~vN~~~~KN~iG~f~~---P~~V~iD~~~l~tL~~~e~~~G~aEiiK~a~ 124 (260)
T PF01761_consen 54 RGIPFIQVPTTLLAQVDSSIGGKTGVNFPGGKNLIGTFYQ---PEAVLIDPSFLKTLPPREIRSGLAEIIKYAL 124 (260)
T ss_dssp T--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE------SEEEEEGGGGGGS-HHHHHHHHHHHHHHHH
T ss_pred cCCceEeccccHHHHHhcccCCCeeeeCCCCCCcccccCC---CceeEEcHHHHhhccHHHHHhCHHHHHHHHH
Confidence 356899999984 33566666666666544444444444 9999999999999999999999999888876
|
... |
| >PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0074 Score=56.31 Aligned_cols=90 Identities=22% Similarity=0.303 Sum_probs=68.2
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
++.||++.... ....+++...|++-|+.+.+ .-...+-+.+.+.+.++.+++.++|+||++-|++. -+...++....
T Consensus 2 ~V~Ii~gs~SD-~~~~~~a~~~L~~~gi~~~~-~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a-~Lpgvva~~t~ 78 (150)
T PF00731_consen 2 KVAIIMGSTSD-LPIAEEAAKTLEEFGIPYEV-RVASAHRTPERLLEFVKEYEARGADVIIAVAGMSA-ALPGVVASLTT 78 (150)
T ss_dssp EEEEEESSGGG-HHHHHHHHHHHHHTT-EEEE-EE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS---HHHHHHHHSS
T ss_pred eEEEEeCCHHH-HHHHHHHHHHHHHcCCCEEE-EEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcc-cchhhheeccC
Confidence 67888887643 34669999999999998874 55678999999999999999889999999999854 46777776664
Q ss_pred CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcC
Q psy2427 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTG 168 (660)
Q Consensus 132 ~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtg 168 (660)
+|+|.||+..+..
T Consensus 79 ------------------------~PVIgvP~~~~~~ 91 (150)
T PF00731_consen 79 ------------------------LPVIGVPVSSGYL 91 (150)
T ss_dssp ------------------------S-EEEEEE-STTT
T ss_pred ------------------------CCEEEeecCcccc
Confidence 8999999987643
|
PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D .... |
| >TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.021 Score=53.39 Aligned_cols=86 Identities=23% Similarity=0.297 Sum_probs=66.9
Q ss_pred EEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCC
Q psy2427 54 CVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDP 133 (660)
Q Consensus 54 liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~ 133 (660)
.||++... +....++....|++-|+++.+ .-...|-+.+.+.+.++.+++.++++||++.|++. -+...++....
T Consensus 2 ~IimGS~S-D~~~~~~a~~~L~~~gi~~dv-~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa-~Lpgvva~~t~-- 76 (156)
T TIGR01162 2 GIIMGSDS-DLPTMKKAADILEEFGIPYEL-RVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAA-HLPGMVAALTP-- 76 (156)
T ss_pred EEEECcHh-hHHHHHHHHHHHHHcCCCeEE-EEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccc-hhHHHHHhccC--
Confidence 46666543 233568899999999998763 45677999999999999999999999999999965 35566655443
Q ss_pred CcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 134 EAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 134 ~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
+|+|.||+..+
T Consensus 77 ----------------------~PVIgvP~~~~ 87 (156)
T TIGR01162 77 ----------------------LPVIGVPVPSK 87 (156)
T ss_pred ----------------------CCEEEecCCcc
Confidence 89999999764
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase. |
| >COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.11 Score=47.91 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=68.1
Q ss_pred EEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 52 RVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 52 r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
++.||-+... |+ ..++..+.|++-|+.+.+ .-+..|-|.+.+.+.++.+++.+.++|||.-||+ -.+-+++|...
T Consensus 4 ~V~IIMGS~SD~~--~mk~Aa~~L~~fgi~ye~-~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgA-AHLPGmvAa~T 79 (162)
T COG0041 4 KVGIIMGSKSDWD--TMKKAAEILEEFGVPYEV-RVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGA-AHLPGMVAAKT 79 (162)
T ss_pred eEEEEecCcchHH--HHHHHHHHHHHcCCCeEE-EEEeccCCHHHHHHHHHHHHHCCCeEEEecCcch-hhcchhhhhcC
Confidence 5666666543 33 347788889999999875 4577899999999999999999999999999994 45677776655
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
. +|+|.||--.
T Consensus 80 ~------------------------lPViGVPv~s 90 (162)
T COG0041 80 P------------------------LPVIGVPVQS 90 (162)
T ss_pred C------------------------CCeEeccCcc
Confidence 3 8999999874
|
|
| >PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.2 Score=50.15 Aligned_cols=108 Identities=14% Similarity=0.202 Sum_probs=66.7
Q ss_pred HHHHHHHHhcC-CCEEEEEECccccc-c--c-hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE
Q psy2427 39 REVGMDMVNMK-AQRVCVMTDPHLSK-L--A-PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 39 ~~l~~~l~~~g-~~r~liVtd~~~~~-~--~-~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 113 (660)
+.+.+++..++ .+|++||..|..-+ . . +.+++.+.|++.++++.++.-- . .....+.++.+...+.|.||+
T Consensus 99 ~~~~~~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~--~--~ghA~~la~~~~~~~~D~VV~ 174 (481)
T PLN02958 99 QKLRDYLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETK--Y--QLHAKEVVRTMDLSKYDGIVC 174 (481)
T ss_pred HHHHHHHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEecc--C--ccHHHHHHHHhhhcCCCEEEE
Confidence 34556665543 37899998875432 1 1 2246778999999988765321 1 234455555555567899999
Q ss_pred ecC-chhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcC
Q psy2427 114 VGG-GSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTG 168 (660)
Q Consensus 114 vGG-GsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtg 168 (660)
+|| |++-.+.-.+. .+++ + .....+|+..||.=.+.+
T Consensus 175 vGGDGTlnEVvNGL~---~~~~---~------------~~~~~~pLGiIPaGTgNd 212 (481)
T PLN02958 175 VSGDGILVEVVNGLL---ERED---W------------KTAIKLPIGMVPAGTGNG 212 (481)
T ss_pred EcCCCHHHHHHHHHh---hCcc---c------------cccccCceEEecCcCcch
Confidence 999 88877776553 2110 0 001127999999766555
|
|
| >PRK13054 lipid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.89 Score=47.85 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=47.3
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
+|+++|..+.......+.++.+.|.+.|+++.++.-- ......+.++.+...+.|.||++|| |++..++-.+
T Consensus 4 ~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~----~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l 76 (300)
T PRK13054 4 PKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTW----EKGDAARYVEEALALGVATVIAGGGDGTINEVATAL 76 (300)
T ss_pred ceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEec----CCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHH
Confidence 6788888766433334577888899999987754321 1122344555555567899999999 7777666554
|
|
| >PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.91 Score=50.54 Aligned_cols=71 Identities=27% Similarity=0.365 Sum_probs=52.7
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCC--CeEEEEeC-cccCCCHHHHHHHHHHhHhcCCC-EEEEecCchhhhHH
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHG--VKFELFDK-VRVEPTGDSFLEATKFVRSVQCD-AFIAVGGGSVIDTC 123 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~g--i~~~~~~~-~~~~p~~~~v~~~~~~~~~~~~D-~IIavGGGsviD~A 123 (660)
.+|+.|||+++... +.++...+.+.. +++.+|+- +.++-...+|.++.+.+...++| .||+=||||.-|+.
T Consensus 135 p~~I~viTs~~gAa---~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~ 209 (438)
T PRK00286 135 PKRIGVITSPTGAA---IRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLW 209 (438)
T ss_pred CCEEEEEeCCccHH---HHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhh
Confidence 36899999998643 367777777653 56777754 56676778888888887776678 66788999999984
|
|
| >PRK13055 putative lipid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.84 Score=48.87 Aligned_cols=73 Identities=23% Similarity=0.361 Sum_probs=48.2
Q ss_pred CEEEEEECccccc---cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSK---LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~---~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
+|++||..+..-. ...++++.+.|++.|+++.++.-. +......++++.+.+.++|.||++|| |++-.++..+
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~---~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl 79 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTT---PEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGI 79 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEee---cCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHH
Confidence 6888998876432 123477889999999987765321 12223345555555667899999999 6666666544
|
|
| >TIGR00237 xseA exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.3 Score=49.05 Aligned_cols=72 Identities=26% Similarity=0.422 Sum_probs=53.3
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCC--CeEEEEeC-cccCCCHHHHHHHHHHhHhc-CCC-EEEEecCchhhhHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHG--VKFELFDK-VRVEPTGDSFLEATKFVRSV-QCD-AFIAVGGGSVIDTCKA 125 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~g--i~~~~~~~-~~~~p~~~~v~~~~~~~~~~-~~D-~IIavGGGsviD~AK~ 125 (660)
+|+-|||++... .+.++...+++.. +++.+|+. +.++-...+|-++++.+... ++| .||+=||||.-|+.=|
T Consensus 130 ~~i~vits~~~a---a~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~F 206 (432)
T TIGR00237 130 KRVGVITSQTGA---ALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSF 206 (432)
T ss_pred CEEEEEeCCccH---HHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhc
Confidence 689999998864 3477888887664 56777753 66677778888888777653 367 6778899999998643
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. |
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.77 Score=52.87 Aligned_cols=89 Identities=19% Similarity=0.271 Sum_probs=71.5
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||++.... ....++....|++-|+++.+ .-...|-+.+.+.+.++.+++.++++||++=|++. -+...+|...
T Consensus 411 ~~v~i~~gs~sd-~~~~~~~~~~l~~~g~~~~~-~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~-~l~~~~a~~t 487 (577)
T PLN02948 411 PLVGIIMGSDSD-LPTMKDAAEILDSFGVPYEV-TIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAA-HLPGMVASMT 487 (577)
T ss_pred CeEEEEECchhh-HHHHHHHHHHHHHcCCCeEE-EEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccc-cchHHHhhcc
Confidence 468888886643 34568899999999999773 55678999999999999999999999999988865 4666666555
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
. +|+|.||+..|
T Consensus 488 ~------------------------~pvi~vp~~~~ 499 (577)
T PLN02948 488 P------------------------LPVIGVPVKTS 499 (577)
T ss_pred C------------------------CCEEEcCCCCC
Confidence 4 89999999764
|
|
| >PRK13337 putative lipid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=91.54 E-value=1.2 Score=47.07 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=49.3
Q ss_pred CEEEEEECcccccc---chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKL---APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~---~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
+|+++|..+..-.. ..+.++.+.|++.++++.++.- + ......++++.+.+.+.|.||++|| |++-+++..+
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t-~---~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl 77 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHAT-T---GPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGI 77 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEe-c---CCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHH
Confidence 68888888764321 1346788889999998776532 1 2244455555555677899999999 7777777665
Q ss_pred H
Q psy2427 127 N 127 (660)
Q Consensus 127 a 127 (660)
.
T Consensus 78 ~ 78 (304)
T PRK13337 78 A 78 (304)
T ss_pred h
Confidence 3
|
|
| >PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ] | Back alignment and domain information |
|---|
Probab=91.38 E-value=1.1 Score=40.86 Aligned_cols=71 Identities=17% Similarity=0.306 Sum_probs=42.0
Q ss_pred EEEEEECccccccch-HHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC-CCEEEEecC-chhhhHHHHH
Q psy2427 52 RVCVMTDPHLSKLAP-VKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ-CDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 52 r~liVtd~~~~~~~~-~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~-~D~IIavGG-GsviD~AK~~ 126 (660)
|++||.++..-.... ++++.+.|...+..+.++.- +. .+...++.......+ .|.||++|| |++.++...+
T Consensus 1 k~~vi~Np~sG~~~~~~~~v~~~l~~~~~~~~~~~t-~~---~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l 74 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAKWKKVEPALRAAGIDYEVIET-ES---AGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGL 74 (130)
T ss_dssp SEEEEEETTSTTSHHHHHHHHHHHHHTTCEEEEEEE-SS---TTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCchhHHHHHHHHHHcCCceEEEEE-ec---cchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHH
Confidence 567787776433211 36889999999988776543 22 222233333233333 489999999 6666665544
|
Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A. |
| >PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 | Back alignment and domain information |
|---|
Probab=91.06 E-value=1.1 Score=47.55 Aligned_cols=72 Identities=28% Similarity=0.419 Sum_probs=54.2
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCC--CeEEEEe-CcccCCCHHHHHHHHHHhHhcC----CC-EEEEecCchhhhH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHG--VKFELFD-KVRVEPTGDSFLEATKFVRSVQ----CD-AFIAVGGGSVIDT 122 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~g--i~~~~~~-~~~~~p~~~~v~~~~~~~~~~~----~D-~IIavGGGsviD~ 122 (660)
+|+-|||+++.. .+.++...+++.+ +++.+|+ .+.++-...+|.++.+.+.+.+ +| .||+=||||.-|+
T Consensus 15 ~~I~vITs~~gA---a~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL 91 (319)
T PF02601_consen 15 KRIAVITSPTGA---AIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDL 91 (319)
T ss_pred CEEEEEeCCchH---HHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHh
Confidence 799999998864 3367777777654 4566665 4667777888888888887654 78 5677899999998
Q ss_pred HHH
Q psy2427 123 CKA 125 (660)
Q Consensus 123 AK~ 125 (660)
.-|
T Consensus 92 ~~F 94 (319)
T PF02601_consen 92 WAF 94 (319)
T ss_pred ccc
Confidence 753
|
1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity |
| >TIGR00147 lipid kinase, YegS/Rv2252/BmrU family | Back alignment and domain information |
|---|
Probab=90.95 E-value=1.3 Score=46.39 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=48.6
Q ss_pred CEEEEEECccccc---cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSK---LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~---~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
+|++||..+..-. ....+++.+.|++.|+++.++...... ... +.++.+.+.++|+||++|| |++..++..+
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~-~~~---~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l 77 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKG-DAA---RYVEEARKFGVDTVIAGGGDGTINEVVNAL 77 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcc-cHH---HHHHHHHhcCCCEEEEECCCChHHHHHHHH
Confidence 6888998884322 224578889999999988765432211 222 2333444567899999999 8888888766
Q ss_pred H
Q psy2427 127 N 127 (660)
Q Consensus 127 a 127 (660)
.
T Consensus 78 ~ 78 (293)
T TIGR00147 78 I 78 (293)
T ss_pred h
Confidence 3
|
The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized. |
| >COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.55 E-value=1.4 Score=48.05 Aligned_cols=71 Identities=25% Similarity=0.419 Sum_probs=54.9
Q ss_pred CEEEEEECccccccchHHHHHHHHHhC--CCeEEEEe-CcccCCCHHHHHHHHHHhHhcC-CC-EEEEecCchhhhHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRH--GVKFELFD-KVRVEPTGDSFLEATKFVRSVQ-CD-AFIAVGGGSVIDTCK 124 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~--gi~~~~~~-~~~~~p~~~~v~~~~~~~~~~~-~D-~IIavGGGsviD~AK 124 (660)
+++-|||++... .+.+|...+++. .+++.+|+ .+.++-....|-++++.+.+.+ +| .|||=||||+=|+--
T Consensus 136 ~~IGVITS~tgA---airDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~ 211 (440)
T COG1570 136 KKIGVITSPTGA---ALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWA 211 (440)
T ss_pred CeEEEEcCCchH---HHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhc
Confidence 679999999854 346777777765 36777775 4677778888888888888766 88 678899999999754
|
|
| >cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) | Back alignment and domain information |
|---|
Probab=90.26 E-value=2.6 Score=44.92 Aligned_cols=91 Identities=10% Similarity=0.072 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+.+..+|.+|+.+|+..........+.+.+.+++.|+++.....+....+..+....+..++..++|.||..+.+.
T Consensus 124 ~a~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~~~~~~ 203 (350)
T cd06366 124 PAIAALLKKFGWRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHFSPD 203 (350)
T ss_pred HHHHHHHHHCCCcEEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEEECChH
Confidence 34666777788899999987665544566889999999999876443343333367888888888888999999887766
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
|...++.....
T Consensus 204 --~~~~~~~~a~~ 214 (350)
T cd06366 204 --LARRVFCEAYK 214 (350)
T ss_pred --HHHHHHHHHHH
Confidence 66666654443
|
Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. |
| >cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) | Back alignment and domain information |
|---|
Probab=90.24 E-value=2.2 Score=45.28 Aligned_cols=90 Identities=10% Similarity=0.088 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
.+.++++.+|.+|+.+|++...+.....+.+.+.+++.|+++.....+....+..+....++.++..++|+||..+.+
T Consensus 150 a~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~-- 227 (348)
T cd06350 150 AIVALLKHFGWTWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFGDE-- 227 (348)
T ss_pred HHHHHHHHCCCeEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEeCc--
Confidence 356677788889999998776555556688999999999887643344433346788899999999999999999877
Q ss_pred hhHHHHHHhHhc
Q psy2427 120 IDTCKAANLYYC 131 (660)
Q Consensus 120 iD~AK~~a~~~~ 131 (660)
-|+..++.....
T Consensus 228 ~~~~~~~~~a~~ 239 (348)
T cd06350 228 DDALRLFCEAYK 239 (348)
T ss_pred HHHHHHHHHHHH
Confidence 466666655444
|
Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr |
| >PRK11914 diacylglycerol kinase; Reviewed | Back alignment and domain information |
|---|
Probab=90.13 E-value=2.9 Score=44.04 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=53.4
Q ss_pred HhcCCCEEEEEECccccc---cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhh
Q psy2427 46 VNMKAQRVCVMTDPHLSK---LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVID 121 (660)
Q Consensus 46 ~~~g~~r~liVtd~~~~~---~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD 121 (660)
++.-.+|+++|..+..-. ....+++.+.|++.|+++.++.. .......+.++.+.+.++|.||++|| |++-.
T Consensus 4 ~~~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t----~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~e 79 (306)
T PRK11914 4 RRHEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVG----TDAHDARHLVAAALAKGTDALVVVGGDGVISN 79 (306)
T ss_pred CcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEe----CCHHHHHHHHHHHHhcCCCEEEEECCchHHHH
Confidence 444558999999876422 12456888999999998776532 22456777777777788999999999 56555
Q ss_pred HHHH
Q psy2427 122 TCKA 125 (660)
Q Consensus 122 ~AK~ 125 (660)
++..
T Consensus 80 vv~~ 83 (306)
T PRK11914 80 ALQV 83 (306)
T ss_pred HhHH
Confidence 5443
|
|
| >PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2 | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.13 Score=53.89 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=47.8
Q ss_pred EEEEEECccccc-cchHHHHHHHHHhC-CCeEEEEeCcccC--------CCHH----------HHHHHHHHhHhcCCCEE
Q psy2427 52 RVCVMTDPHLSK-LAPVKATLDSLTRH-GVKFELFDKVRVE--------PTGD----------SFLEATKFVRSVQCDAF 111 (660)
Q Consensus 52 r~liVtd~~~~~-~~~~~~i~~~L~~~-gi~~~~~~~~~~~--------p~~~----------~v~~~~~~~~~~~~D~I 111 (660)
|+.||+.+.-.+ .....++.+.|.+. ++.+.....+... .... ............++|+|
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i 80 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDLI 80 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCEE
Confidence 567888776332 34568888888888 6555543322111 0000 12233455566799999
Q ss_pred EEecC-chhhhHHHHHH
Q psy2427 112 IAVGG-GSVIDTCKAAN 127 (660)
Q Consensus 112 IavGG-GsviD~AK~~a 127 (660)
|.+|| |+.++++|.+.
T Consensus 81 i~lGGDGT~L~~~~~~~ 97 (285)
T PF01513_consen 81 IVLGGDGTFLRAARLFG 97 (285)
T ss_dssp EEEESHHHHHHHHHHCT
T ss_pred EEECCCHHHHHHHHHhc
Confidence 99999 99999999764
|
7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A .... |
| >TIGR03702 lip_kinase_YegS lipid kinase YegS | Back alignment and domain information |
|---|
Probab=89.51 E-value=1.8 Score=45.28 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=43.1
Q ss_pred EEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 53 VCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 53 ~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
+++|..+.......+.++++.|++.|+++.++. .+. .....++++.+.+.+.|.||++|| |++-.++-.+
T Consensus 2 ~~~I~N~~~~~~~~~~~~~~~l~~~g~~~~v~~-t~~---~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl 72 (293)
T TIGR03702 2 ALLILNGKQADNEDVREAVGDLRDEGIQLHVRV-TWE---KGDAQRYVAEALALGVSTVIAGGGDGTLREVATAL 72 (293)
T ss_pred EEEEEeCCccchhHHHHHHHHHHHCCCeEEEEE-ecC---CCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHH
Confidence 445555443222245778888999999887652 111 122334455555667899999999 7766666544
|
Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions. |
| >PRK13059 putative lipid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=89.45 E-value=2 Score=45.04 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=45.3
Q ss_pred CEEEEEECccccc---cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSK---LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~---~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
+|+++|..+..-. ...++++++.|.+.|+++.++.-... . ..+.+. .+.+.++|.||++|| |++-.++..+
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~-~---~~~~~~-~~~~~~~d~vi~~GGDGTv~evv~gl 76 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLE-Y---DLKNAF-KDIDESYKYILIAGGDGTVDNVVNAM 76 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCc-c---hHHHHH-HHhhcCCCEEEEECCccHHHHHHHHH
Confidence 5788888876422 12347788899999998776543222 1 223333 333567899999999 6666665544
|
|
| >cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=87.23 E-value=3.5 Score=43.24 Aligned_cols=89 Identities=10% Similarity=-0.025 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+++.+.|.+|+.+++....+.....+.+.+.+++.|+++.--..+ .+...+....+..+++.++|+|+-.+.+.
T Consensus 126 ~~l~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~--~~~~~d~~~~v~~l~~~~pd~v~~~~~~~ 203 (312)
T cd06346 126 QALAQLAAERGYKSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAH--EEGKSSYSSEVAAAAAGGPDALVVIGYPE 203 (312)
T ss_pred HHHHHHHHHcCCCeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEee--CCCCCCHHHHHHHHHhcCCCEEEEecccc
Confidence 3366777778889999999877665556688899999999987632223 33455666778888889999998876655
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
|.+.++.....
T Consensus 204 --~~~~~~~~~~~ 214 (312)
T cd06346 204 --TGSGILRSAYE 214 (312)
T ss_pred --hHHHHHHHHHH
Confidence 67776654443
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. |
| >PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=86.97 E-value=1.6 Score=45.92 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=44.4
Q ss_pred CCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccC-CCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 50 AQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVE-PTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 50 ~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~-p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
.+++.||..+.-.. ....+++.+.|++.|+++.+....... +.. ............++|+||++|| |+++.+++..
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~-~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~~ 82 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGH-GLQTVSRKLLGEVCDLVIVVGGDGSLLGAARAL 82 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcc-cccccchhhcccCCCEEEEEeCcHHHHHHHHHh
Confidence 36788887654322 235578888899999998765421100 000 0000001112236899999999 7788777654
|
|
| >COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.78 E-value=6.3 Score=41.63 Aligned_cols=82 Identities=20% Similarity=0.224 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCC-EEEEEECccccccchHHHHHHHHHhCCCe--EEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 38 TREVGMDMVNMKAQ-RVCVMTDPHLSKLAPVKATLDSLTRHGVK--FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 38 ~~~l~~~l~~~g~~-r~liVtd~~~~~~~~~~~i~~~L~~~gi~--~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
...+-.+|++++.. ..-++|.+....- .. +...++. +..|...-+..|.++-..+++.+.+.++|.|+-+
T Consensus 35 ~~~v~rfL~~l~~~~~~~flt~p~~mG~----~~---~~~~~~~~~v~~~~~~~~~tTa~DT~~~~r~~~~~gVdlIvfa 107 (355)
T COG3199 35 IVRVKRFLKKLDANGDVEFLTPPGPMGE----SL---AEASGFKYRVIRFQESTPRTTAEDTINAVRRMVERGVDLIVFA 107 (355)
T ss_pred HHHHHHHHHhccccCceEEEeCCcccch----hH---HHhhcCcceEEeecccCCCccHHHHHHHHHHHHhcCceEEEEe
Confidence 34455667776632 4666776664322 11 1122333 3335665566788888889999999999999999
Q ss_pred cC-chhhhHHHHH
Q psy2427 115 GG-GSVIDTCKAA 126 (660)
Q Consensus 115 GG-GsviD~AK~~ 126 (660)
|| |++-|+++++
T Consensus 108 GGDGTarDVa~av 120 (355)
T COG3199 108 GGDGTARDVAEAV 120 (355)
T ss_pred CCCccHHHHHhhc
Confidence 98 8888888877
|
|
| >PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional | Back alignment and domain information |
|---|
Probab=86.29 E-value=1.9 Score=45.27 Aligned_cols=79 Identities=11% Similarity=0.168 Sum_probs=45.6
Q ss_pred CCCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 49 KAQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 49 g~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
..+++.|+....-.+ ....+++.+.|++.|+++.+.......................++|+||++|| |+++.+++..
T Consensus 4 ~~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~~ 83 (291)
T PRK02155 4 QFKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGTMLGIGRQL 83 (291)
T ss_pred cCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcHHHHHHHHHh
Confidence 346788887654322 23568888899999998776432111100000000000111236899999999 8888877765
Q ss_pred H
Q psy2427 127 N 127 (660)
Q Consensus 127 a 127 (660)
.
T Consensus 84 ~ 84 (291)
T PRK02155 84 A 84 (291)
T ss_pred c
Confidence 3
|
|
| >PRK13057 putative lipid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=84.76 E-value=6.5 Score=40.98 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 66 PVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 66 ~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
..+++.+.|++.|+++.++.. .......++++.+ ..++|.||++|| |++-.++..+
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t----~~~~~a~~~~~~~-~~~~d~iiv~GGDGTv~~v~~~l 70 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPA----EDPDDLSEVIEAY-ADGVDLVIVGGGDGTLNAAAPAL 70 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEec----CCHHHHHHHHHHH-HcCCCEEEEECchHHHHHHHHHH
Confidence 458899999999998775532 2344455555553 457899999999 6666665544
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.45 E-value=4.3 Score=44.34 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=56.6
Q ss_pred ECcChHH---HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCC
Q psy2427 33 IGPGVTR---EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCD 109 (660)
Q Consensus 33 ~G~g~~~---~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D 109 (660)
.|.|-.. +|+.++++.| +|+++|+-...+. +.++++...-++.++.+ |.......+.+.+.++++.+++.++|
T Consensus 109 QGsGKTTt~~KLA~~lkk~~-~kvllVaaD~~Rp-AA~eQL~~La~q~~v~~--f~~~~~~~Pv~Iak~al~~ak~~~~D 184 (451)
T COG0541 109 QGSGKTTTAGKLAKYLKKKG-KKVLLVAADTYRP-AAIEQLKQLAEQVGVPF--FGSGTEKDPVEIAKAALEKAKEEGYD 184 (451)
T ss_pred cCCChHhHHHHHHHHHHHcC-CceEEEecccCCh-HHHHHHHHHHHHcCCce--ecCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4888654 4778888877 7888887654443 45688888887777664 55533455677889999999999999
Q ss_pred EEE
Q psy2427 110 AFI 112 (660)
Q Consensus 110 ~II 112 (660)
+||
T Consensus 185 vvI 187 (451)
T COG0541 185 VVI 187 (451)
T ss_pred EEE
Confidence 987
|
|
| >PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=83.35 E-value=4 Score=43.13 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=45.2
Q ss_pred CCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 50 AQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 50 ~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
.+|+++|..+.-.+ ....+++.+.|++.|+++.++....... ...... .....++|+||++|| |+++-+++..
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~---~~~~~~-~~~~~~~d~vi~~GGDGT~l~~~~~~ 77 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDN---PYPVFL-ASASELIDLAIVLGGDGTVLAAARHL 77 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhc---cccchh-hccccCcCEEEEECCcHHHHHHHHHh
Confidence 36888888764322 2345788888999999987654321110 111111 222346899999999 7777777665
|
|
| >PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=83.28 E-value=2.9 Score=43.75 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=45.5
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHHH
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAAN 127 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~a 127 (660)
.+|+.|++.+.-.......++.+.|++.|+++.+.......-..... .. +.. ..++|+||++|| |+.+.+++..+
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~-~~-~~~-~~~~Dlvi~iGGDGT~L~aa~~~~ 85 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGY-GL-DEL-FKISDFLISLGGDGTLISLCRKAA 85 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccc-ch-hhc-ccCCCEEEEECCCHHHHHHHHHhc
Confidence 57899998765322345688888899999988764321100000000 00 111 236899999999 78888888653
|
|
| >cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor | Back alignment and domain information |
|---|
Probab=83.15 E-value=7.1 Score=43.82 Aligned_cols=86 Identities=13% Similarity=-0.048 Sum_probs=60.7
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhh
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsvi 120 (660)
+.+.++.+|-+++.+|++..-+.....+.+.+.+++.|+++.....+...+...+....+..+++.++|.+|-++-+...
T Consensus 177 l~~l~~~~~W~~Vaii~~~~~yg~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~lk~~~~da~vvv~~~~~~ 256 (472)
T cd06374 177 MLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELAAHEGLCIAHSDKIYSNAGEQSFDRLLRKLRSRLPKARVVVCFCEGM 256 (472)
T ss_pred HHHHHHHCCCcEEEEEEecchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCchHHHHHHHHHHHhcCCCcEEEEEEechH
Confidence 55667778889999999876554446688999999999887754445556667888888988988777865545433334
Q ss_pred hHHHHH
Q psy2427 121 DTCKAA 126 (660)
Q Consensus 121 D~AK~~ 126 (660)
++..++
T Consensus 257 ~~~~~l 262 (472)
T cd06374 257 TVRGLL 262 (472)
T ss_pred HHHHHH
Confidence 444444
|
Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. |
| >cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR) | Back alignment and domain information |
|---|
Probab=83.13 E-value=11 Score=41.89 Aligned_cols=89 Identities=9% Similarity=-0.053 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHh-cCCCEEEEecCch
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRS-VQCDAFIAVGGGS 118 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGGGs 118 (660)
.+.+.+..++.+++.+|++...+.....+.+.+.+++.|+.+.....+...+...+....+..+++ .++|+||..|..
T Consensus 162 a~~~~l~~~~w~~vaii~~~~~~G~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~d~~~~l~~l~~~~~a~viil~~~~- 240 (452)
T cd06362 162 AMVDIVKAFNWTYVSTVASEGNYGEKGIEAFEKLAAERGICIAGSEKIPSSATEEEFDNIIRKLLSKPNARVVVLFCRE- 240 (452)
T ss_pred HHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHHHHCCeeEEEEEEcCCCCCHHHHHHHHHHHhhcCCCeEEEEEcCh-
Confidence 355667778889999998876544446688999999999887643344445567788888888776 578998877654
Q ss_pred hhhHHHHHHhHh
Q psy2427 119 VIDTCKAANLYY 130 (660)
Q Consensus 119 viD~AK~~a~~~ 130 (660)
-|+.+++....
T Consensus 241 -~~~~~~~~~a~ 251 (452)
T cd06362 241 -DDIRGLLAAAK 251 (452)
T ss_pred -HHHHHHHHHHH
Confidence 56666665444
|
Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III. |
| >COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.81 E-value=5.9 Score=42.86 Aligned_cols=87 Identities=16% Similarity=0.104 Sum_probs=61.4
Q ss_pred HHHHHHhcCCC-EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 41 VGMDMVNMKAQ-RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 41 l~~~l~~~g~~-r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
+.+++.+.+.+ |+.+|.+...+..+..+.+++.|+..|.++....... |...+....+..++..++|+|+..|-|.
T Consensus 138 ~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~v~~i~~~~~d~v~~~~~~~- 214 (366)
T COG0683 138 AADYLVKKGGKKRVAIIGDDYAYGEGLADAFKAALKALGGEVVVEEVYA--PGDTDFSALVAKIKAAGPDAVLVGGYGP- 214 (366)
T ss_pred HHHHHHHhcCCcEEEEEeCCCCcchhHHHHHHHHHHhCCCeEEEEEeeC--CCCCChHHHHHHHHhcCCCEEEECCCCc-
Confidence 56667655545 9999999988888888999999999999833223332 2222388999999999999777665554
Q ss_pred hhHHHHHHhHhc
Q psy2427 120 IDTCKAANLYYC 131 (660)
Q Consensus 120 iD~AK~~a~~~~ 131 (660)
|.+-++-....
T Consensus 215 -~~~~~~r~~~~ 225 (366)
T COG0683 215 -DAALFLRQARE 225 (366)
T ss_pred -cchHHHHHHHH
Confidence 45555544444
|
|
| >cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily | Back alignment and domain information |
|---|
Probab=81.69 E-value=11 Score=38.32 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=53.0
Q ss_pred HHHHHHHHhcC-CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 39 REVGMDMVNMK-AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 39 ~~l~~~l~~~g-~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+++...+ .+|+.+|++.........+.+.+.+++.|+++.....+.. ..++....+..++..++|.||..+.+
T Consensus 123 ~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~--~~~~~~~~~~~l~~~~~~~vi~~~~~ 200 (298)
T cd06268 123 AALADYLAEKGKVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPP--GATDFSPLIAKLKAAGPDAVFLAGYG 200 (298)
T ss_pred HHHHHHHHHhcCCCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCC--CCccHHHHHHHHHhcCCCEEEEcccc
Confidence 44667777766 7899999977644334557788889988987654333322 22456667777777789999999875
|
Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC |
| >PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A | Back alignment and domain information |
|---|
Probab=81.35 E-value=7.3 Score=41.06 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=63.0
Q ss_pred HHHHHHHH-hcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 39 REVGMDMV-NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 39 ~~l~~~l~-~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+++. +.|.+|+.||+....+.....+.+.+.+++.|+++.-...++ ++..+....++.+++.++|+|+..++
T Consensus 123 ~~~~~~~~~~~g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~- 199 (343)
T PF13458_consen 123 AALAEYLAKKLGAKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEIRYP--PGDTDFSALVQQLKSAGPDVVVLAGD- 199 (343)
T ss_dssp HHHHHHHHHTTTTSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEE---TTSSHHHHHHHHHHHTTTSEEEEEST-
T ss_pred HHHHHHHHHHcCCcEEEEEecCchhhhHHHHHHHHHHhhcCceeccceecc--cccccchHHHHHHhhcCCCEEEEecc-
Confidence 34566654 478899999997765555566889999999999964222333 34477788888899899999888764
Q ss_pred hhhhHHHHHHhHhc
Q psy2427 118 SVIDTCKAANLYYC 131 (660)
Q Consensus 118 sviD~AK~~a~~~~ 131 (660)
.-|+++++.....
T Consensus 200 -~~~~~~~~~~~~~ 212 (343)
T PF13458_consen 200 -PADAAAFLRQLRQ 212 (343)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHh
Confidence 4456777665554
|
... |
| >cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=81.27 E-value=12 Score=40.07 Aligned_cols=88 Identities=14% Similarity=0.020 Sum_probs=63.1
Q ss_pred HHHHHHHhc-----CCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 40 EVGMDMVNM-----KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 40 ~l~~~l~~~-----g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
.+.+++.+. +.+|+.+|+....+.....+.+.+.+++.|+++.....+ .+...+....+..++..++|+|+-.
T Consensus 125 ~l~~~~~~~~~~~~~~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~--~~~~~D~~~~v~~i~~~~pd~V~~~ 202 (351)
T cd06334 125 ALVQYIAEQEGGKLKGKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVP--PPGPNDQKAQWLQIRRSGPDYVILW 202 (351)
T ss_pred HHHHHHHHhcccCCCCCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccC--CCCcccHHHHHHHHHHcCCCEEEEe
Confidence 355666554 379999999877666566688899999999987643333 2334566777888888999999887
Q ss_pred cCchhhhHHHHHHhHhc
Q psy2427 115 GGGSVIDTCKAANLYYC 131 (660)
Q Consensus 115 GGGsviD~AK~~a~~~~ 131 (660)
+.+. |.+.++-....
T Consensus 203 ~~~~--~~~~~~~~~~~ 217 (351)
T cd06334 203 GWGV--MNPVAIKEAKR 217 (351)
T ss_pred cccc--hHHHHHHHHHH
Confidence 7775 67777655443
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=81.07 E-value=3.4 Score=43.29 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=44.2
Q ss_pred CCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 50 AQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 50 ~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
.+++.||....-.+ .....++.+.|++.|+++.+...................-...++|+||++|| |+.+-+++.+
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDGT~L~aa~~~ 83 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDGNMLGAARVL 83 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcHHHHHHHHHh
Confidence 57889987754322 23558888899999998876432111000000000000111236899999999 7777766654
|
|
| >cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor | Back alignment and domain information |
|---|
Probab=81.07 E-value=7.3 Score=42.74 Aligned_cols=86 Identities=3% Similarity=0.027 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccC-CCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE-PTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~-p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+.+..++.+|+.+|++...+.....+.+.+.+++.|+++.....+... ....+....+..++..++|+||-.+.+
T Consensus 165 ~al~~~l~~~~~k~vaii~~~~~~g~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil~~~~ 244 (410)
T cd06363 165 EAMVQLLQEFGWNWVAFLGSDDEYGRDGLQLFSELIANTGICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVVFASR 244 (410)
T ss_pred HHHHHHHHHCCCcEEEEEEeCChhHHHHHHHHHHHHHHCCeEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEEEcCh
Confidence 3366677778888999998766555555688889999999877643333322 246678888989999999999887665
Q ss_pred hhhhHHHHH
Q psy2427 118 SVIDTCKAA 126 (660)
Q Consensus 118 sviD~AK~~ 126 (660)
. |+++++
T Consensus 245 ~--~~~~il 251 (410)
T cd06363 245 Q--PAEAFF 251 (410)
T ss_pred H--HHHHHH
Confidence 4 344554
|
Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors. |
| >TIGR02990 ectoine_eutA ectoine utilization protein EutA | Back alignment and domain information |
|---|
Probab=80.99 E-value=17 Score=36.91 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=58.0
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCccc-------CCCHHHHHHHHHHhHhcCCCEEEE
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRV-------EPTGDSFLEATKFVRSVQCDAFIA 113 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~-------~p~~~~v~~~~~~~~~~~~D~IIa 113 (660)
+.+.|+.+|.+|+-|+|- .... .-+.+.+.|++.|+++..+.+.+. .-+.+.+.+++..+...++|.|+=
T Consensus 111 ~~~AL~alg~~RIalvTP-Y~~~--v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifi 187 (239)
T TIGR02990 111 AVDGLAALGVRRISLLTP-YTPE--TSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFL 187 (239)
T ss_pred HHHHHHHcCCCEEEEECC-CcHH--HHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEE
Confidence 445567789999999975 3332 237899999999999886643322 345778888888777778897665
Q ss_pred ec-CchhhhHHHHHHhHhc
Q psy2427 114 VG-GGSVIDTCKAANLYYC 131 (660)
Q Consensus 114 vG-GGsviD~AK~~a~~~~ 131 (660)
.+ +=...|+..-+=..++
T Consensus 188 sCTnLrt~~vi~~lE~~lG 206 (239)
T TIGR02990 188 SCTALRAATCAQRIEQAIG 206 (239)
T ss_pred eCCCchhHHHHHHHHHHHC
Confidence 53 3344444444433333
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens. |
| >cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily | Back alignment and domain information |
|---|
Probab=80.87 E-value=8 Score=38.53 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCCEEEEEECccc--cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC--CCEEEEe
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHL--SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ--CDAFIAV 114 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~--~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIav 114 (660)
..+.+++.+.|.+|+.++++... ......+-+++.+++.++.+........+.+.+.....+..+...+ +|+|++.
T Consensus 105 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 184 (264)
T cd06267 105 YLAVEHLIELGHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIFAA 184 (264)
T ss_pred HHHHHHHHHCCCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccchhhHHHHHHHHHhcCCCCcEEEEc
Confidence 34557777778889999987643 2222335567788877753322212222333444444444444333 8999999
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
+++....+.+++.
T Consensus 185 ~~~~a~~~~~al~ 197 (264)
T cd06267 185 NDLMAIGALRALR 197 (264)
T ss_pred CcHHHHHHHHHHH
Confidence 8877766666654
|
Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain. |
| >cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems | Back alignment and domain information |
|---|
Probab=80.76 E-value=9.7 Score=40.30 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=61.5
Q ss_pred HHHHHH-HhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 40 EVGMDM-VNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 40 ~l~~~l-~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.+.+++ ++.|.+++.+++....+.....+.+.+.+++.|+++.....+. +...+....+..++..++|+||-.|.|.
T Consensus 124 ~~~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~v~~l~~~~~d~v~~~~~~~ 201 (340)
T cd06349 124 LLADYAVKDLGFKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYV--PGEKDFRPTITRLRDANPDAIILISYYN 201 (340)
T ss_pred HHHHHHHHHcCCcEEEEEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeC--CCCCcHHHHHHHHHhcCCCEEEEccccc
Confidence 366665 4567789999988776655566889999999998876433332 3345667778888889999998887664
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
|++.++.....
T Consensus 202 --~~~~~~~~~~~ 212 (340)
T cd06349 202 --DGAPIARQARA 212 (340)
T ss_pred --hHHHHHHHHHH
Confidence 55555544443
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. |
| >cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids | Back alignment and domain information |
|---|
Probab=80.60 E-value=20 Score=37.37 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
.+.+++.+.|.+|+.++.+.........+.+.+.+++.|+++.....+.... .+....+..++..++|+|+..+.+.
T Consensus 123 ~~~~~l~~~g~~~vail~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~--~d~~~~~~~l~~~~pdaIi~~~~~~ 199 (312)
T cd06333 123 AILADMKKRGVKTVAFIGFSDAYGESGLKELKALAPKYGIEVVADERYGRTD--TSVTAQLLKIRAARPDAVLIWGSGT 199 (312)
T ss_pred HHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEeeCCCC--cCHHHHHHHHHhCCCCEEEEecCCc
Confidence 3556777789999999987654433455778889999998865322232211 1234444455566899999987543
|
This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however. |
| >PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A | Back alignment and domain information |
|---|
Probab=80.39 E-value=16 Score=39.34 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=52.5
Q ss_pred HhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHHhHhcCCCEEEE-ecCchhhhH
Q psy2427 46 VNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKFVRSVQCDAFIA-VGGGSVIDT 122 (660)
Q Consensus 46 ~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa-vGGGsviD~ 122 (660)
.++|.+|+++|....++....-+-+++.+++.|.++. .|-.. ..+++.++++.+++.++|+|+. +.|-|....
T Consensus 130 ~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~pl----g~td~~~ii~~I~~~~Pd~V~stlvG~s~~aF 205 (363)
T PF13433_consen 130 ENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPL----GATDFDPIIAEIKAAKPDFVFSTLVGDSNVAF 205 (363)
T ss_dssp HHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-----HHHHHHHHHHHHHHT-SEEEEE--TTCHHHH
T ss_pred hccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecC----CchhHHHHHHHHHhhCCCEEEEeCcCCcHHHH
Confidence 5568799999999888765444667788888888765 23222 3489999999999999999886 555666666
Q ss_pred HHHHH
Q psy2427 123 CKAAN 127 (660)
Q Consensus 123 AK~~a 127 (660)
=|..+
T Consensus 206 ~r~~~ 210 (363)
T PF13433_consen 206 YRAYA 210 (363)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 56554
|
|
| >cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily | Back alignment and domain information |
|---|
Probab=80.01 E-value=13 Score=42.30 Aligned_cols=88 Identities=3% Similarity=0.032 Sum_probs=62.1
Q ss_pred HHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhh
Q psy2427 41 VGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVI 120 (660)
Q Consensus 41 l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsvi 120 (660)
+.+.++.+|.+++.+|....-+.....+.+.+.+++.|+++.....+....+..+....+..++..++|+||..|.+.
T Consensus 178 i~~l~~~f~wk~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk~~~a~vVvl~~~~~-- 255 (510)
T cd06364 178 MADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQNSTAKVIVVFSSGP-- 255 (510)
T ss_pred HHHHHHHcCCeEEEEEEecCcchHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEeCcH--
Confidence 455667788899888865554444466889999999999876443344444677788888888888999999876653
Q ss_pred hHHHHHHhHh
Q psy2427 121 DTCKAANLYY 130 (660)
Q Consensus 121 D~AK~~a~~~ 130 (660)
|++.++....
T Consensus 256 ~~~~ll~qa~ 265 (510)
T cd06364 256 DLEPLIKEIV 265 (510)
T ss_pred HHHHHHHHHH
Confidence 5666654433
|
Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 660 | ||||
| 3bfj_A | 387 | Crystal Structure Analysis Of 1,3-Propanediol Oxido | 3e-24 | ||
| 3bfj_A | 387 | Crystal Structure Analysis Of 1,3-Propanediol Oxido | 1e-17 | ||
| 3owo_A | 383 | Structures Of Iron-Dependent Alcohol Dehydrogenase | 2e-22 | ||
| 3owo_A | 383 | Structures Of Iron-Dependent Alcohol Dehydrogenase | 2e-14 | ||
| 2bi4_A | 392 | Lactaldehyde:1,2-Propanediol Oxidoreductase Of Esch | 2e-18 | ||
| 2bi4_A | 392 | Lactaldehyde:1,2-Propanediol Oxidoreductase Of Esch | 3e-11 | ||
| 1rrm_A | 386 | Crystal Structure Of Lactaldehyde Reductase Length | 2e-15 | ||
| 1rrm_A | 386 | Crystal Structure Of Lactaldehyde Reductase Length | 9e-09 | ||
| 1vhd_A | 371 | Crystal Structure Of An Iron Containing Alcohol Deh | 2e-11 | ||
| 1vhd_A | 371 | Crystal Structure Of An Iron Containing Alcohol Deh | 2e-05 | ||
| 1o2d_A | 371 | Crystal Structure Of Alcohol Dehydrogenase, Iron-Co | 2e-11 | ||
| 1o2d_A | 371 | Crystal Structure Of Alcohol Dehydrogenase, Iron-Co | 2e-05 | ||
| 1vlj_A | 407 | Crystal Structure Of Nadh-Dependent Butanol Dehydro | 2e-11 | ||
| 1vlj_A | 407 | Crystal Structure Of Nadh-Dependent Butanol Dehydro | 1e-07 | ||
| 3jzd_A | 358 | Crystal Structure Of Putative Alcohol Dehedrogenase | 4e-08 | ||
| 1oj7_A | 408 | Structural Genomics, Unknown Function Crystal Struc | 5e-08 | ||
| 1oj7_A | 408 | Structural Genomics, Unknown Function Crystal Struc | 2e-05 |
| >pdb|3BFJ|A Chain A, Crystal Structure Analysis Of 1,3-Propanediol Oxidoreductase Length = 387 | Back alignment and structure |
|
| >pdb|3BFJ|A Chain A, Crystal Structure Analysis Of 1,3-Propanediol Oxidoreductase Length = 387 | Back alignment and structure |
|
| >pdb|3OWO|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From Zymomonas Mobilis Zm4 With And Without Nad Cofactor Length = 383 | Back alignment and structure |
|
| >pdb|3OWO|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From Zymomonas Mobilis Zm4 With And Without Nad Cofactor Length = 383 | Back alignment and structure |
|
| >pdb|2BI4|A Chain A, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia Coli Length = 392 | Back alignment and structure |
|
| >pdb|2BI4|A Chain A, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia Coli Length = 392 | Back alignment and structure |
|
| >pdb|1RRM|A Chain A, Crystal Structure Of Lactaldehyde Reductase Length = 386 | Back alignment and structure |
|
| >pdb|1RRM|A Chain A, Crystal Structure Of Lactaldehyde Reductase Length = 386 | Back alignment and structure |
|
| >pdb|1VHD|A Chain A, Crystal Structure Of An Iron Containing Alcohol Dehydrogenase Length = 371 | Back alignment and structure |
|
| >pdb|1VHD|A Chain A, Crystal Structure Of An Iron Containing Alcohol Dehydrogenase Length = 371 | Back alignment and structure |
|
| >pdb|1O2D|A Chain A, Crystal Structure Of Alcohol Dehydrogenase, Iron-Containing (Tm0920) From Thermotoga Maritima At 1.30 A Resolution Length = 371 | Back alignment and structure |
|
| >pdb|1O2D|A Chain A, Crystal Structure Of Alcohol Dehydrogenase, Iron-Containing (Tm0920) From Thermotoga Maritima At 1.30 A Resolution Length = 371 | Back alignment and structure |
|
| >pdb|1VLJ|A Chain A, Crystal Structure Of Nadh-Dependent Butanol Dehydrogenase A (Tm0820) From Thermotoga Maritima At 1.78 A Resolution Length = 407 | Back alignment and structure |
|
| >pdb|1VLJ|A Chain A, Crystal Structure Of Nadh-Dependent Butanol Dehydrogenase A (Tm0820) From Thermotoga Maritima At 1.78 A Resolution Length = 407 | Back alignment and structure |
|
| >pdb|3JZD|A Chain A, Crystal Structure Of Putative Alcohol Dehedrogenase (yp_298327.1) From Ralstonia Eutropha Jmp134 At 2.10 A Resolution Length = 358 | Back alignment and structure |
|
| >pdb|1OJ7|A Chain A, Structural Genomics, Unknown Function Crystal Structure Of E. Coli K-12 Yqhd Length = 408 | Back alignment and structure |
|
| >pdb|1OJ7|A Chain A, Structural Genomics, Unknown Function Crystal Structure Of E. Coli K-12 Yqhd Length = 408 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 660 | |||
| 3bfj_A | 387 | 1,3-propanediol oxidoreductase; opportunistic path | 3e-81 | |
| 3bfj_A | 387 | 1,3-propanediol oxidoreductase; opportunistic path | 7e-57 | |
| 3ox4_A | 383 | Alcohol dehydrogenase 2; iron, NAD, oxidoreductase | 2e-80 | |
| 3ox4_A | 383 | Alcohol dehydrogenase 2; iron, NAD, oxidoreductase | 4e-54 | |
| 1o2d_A | 371 | Alcohol dehydrogenase, iron-containing; TM0920, st | 9e-80 | |
| 1o2d_A | 371 | Alcohol dehydrogenase, iron-containing; TM0920, st | 5e-50 | |
| 1rrm_A | 386 | Lactaldehyde reductase; structural genomics, dehyd | 5e-78 | |
| 1rrm_A | 386 | Lactaldehyde reductase; structural genomics, dehyd | 6e-52 | |
| 3rf7_A | 375 | Iron-containing alcohol dehydrogenase; structural | 2e-67 | |
| 3rf7_A | 375 | Iron-containing alcohol dehydrogenase; structural | 8e-45 | |
| 3jzd_A | 358 | Iron-containing alcohol dehydrogenase; YP_298327.1 | 3e-62 | |
| 3jzd_A | 358 | Iron-containing alcohol dehydrogenase; YP_298327.1 | 2e-45 | |
| 3hl0_A | 353 | Maleylacetate reductase; structur genomics, PSI-2, | 9e-62 | |
| 3hl0_A | 353 | Maleylacetate reductase; structur genomics, PSI-2, | 1e-44 | |
| 3iv7_A | 364 | Alcohol dehydrogenase IV; NP_602249.1, iron-contai | 4e-61 | |
| 3iv7_A | 364 | Alcohol dehydrogenase IV; NP_602249.1, iron-contai | 6e-46 | |
| 1vlj_A | 407 | NADH-dependent butanol dehydrogenase; TM0820, stru | 6e-57 | |
| 1vlj_A | 407 | NADH-dependent butanol dehydrogenase; TM0820, stru | 1e-38 | |
| 1oj7_A | 408 | Hypothetical oxidoreductase YQHD; structural genom | 1e-56 | |
| 1oj7_A | 408 | Hypothetical oxidoreductase YQHD; structural genom | 1e-41 | |
| 1jq5_A | 370 | Glycerol dehydrogenase; oxidoreductase, NAD, glyce | 7e-39 | |
| 1jq5_A | 370 | Glycerol dehydrogenase; oxidoreductase, NAD, glyce | 2e-20 | |
| 1kq3_A | 376 | Glycerol dehydrogenase; structural genomics, joint | 1e-37 | |
| 1kq3_A | 376 | Glycerol dehydrogenase; structural genomics, joint | 1e-19 | |
| 3uhj_A | 387 | Probable glycerol dehydrogenase; structural genomi | 8e-33 | |
| 3uhj_A | 387 | Probable glycerol dehydrogenase; structural genomi | 1e-17 | |
| 1ta9_A | 450 | Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosa | 7e-30 | |
| 1ta9_A | 450 | Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosa | 9e-15 | |
| 3ce9_A | 354 | Glycerol dehydrogenase; NP_348253.1, 3-dehydroquin | 5e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 |
| >3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} Length = 387 | Back alignment and structure |
|---|
Score = 260 bits (668), Expect = 3e-81
Identities = 92/351 (26%), Positives = 154/351 (43%), Gaps = 40/351 (11%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLS--KLAPVKATLDSLTRHGVKFELFDK 86
+ GP VG + ++ ++TD L K V TL L G++ +FD
Sbjct: 12 NVNFFGPNAISVVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDG 71
Query: 87 VRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIG 146
V P + + R QCD + VGGGS D K + + Y G
Sbjct: 72 VEPNPKDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEG-DLYQYA----G 126
Query: 147 KGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTL 206
+T PL P++A+ TT+GT SE T + K K I + P++ + DPL +
Sbjct: 127 IET-LTNPLPPIVAVNTTAGTASEVTRHCVLTNTETKVKFVIVSWRNLPSVSINDPLLMI 185
Query: 207 SLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266
P +TA +G D HA+E++ + NPV+D A A++
Sbjct: 186 GKPAALTAATGMDALTHAVEAYISK-------------------DANPVTDAAAMQAIRL 226
Query: 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYS 326
I + ++AV +L+AR +M AS +AG+ F NA + H +++ + G +
Sbjct: 227 IARNLRQAVALGSNLQAREYMAYASLLAGMAFNNANLGYVHAMAHQLGG---LYD----- 278
Query: 327 DDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAV 377
+PHG++ + P V + ++PE+ + AEL+G +++ + DA
Sbjct: 279 -----MPHGVANAVLLPHVARYNLIANPEKFADIAELMGENITGLSTLDAA 324
|
| >3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} Length = 387 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 7e-57
Identities = 71/280 (25%), Positives = 126/280 (45%), Gaps = 33/280 (11%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
AV TT+GT SE T + K K I + P++ + DPL + P +TA +G D
Sbjct: 139 AVNTTAGTASEVTRHCVLTNTETKVKFVIVSWRNLPSVSINDPLLMIGKPAALTAATGMD 198
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E++ + NPV+D A A++ I + ++AV
Sbjct: 199 ALTHAVEAYISK-------------------DANPVTDAAAMQAIRLIARNLRQAVALGS 239
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
+L+AR +M AS +AG+ F NA + H +++ + G + +PHG++
Sbjct: 240 NLQAREYMAYASLLAGMAFNNANLGYVHAMAHQLGG---LYD----------MPHGVANA 286
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V + ++PE+ + AEL+G +++ + DA + + + I L+
Sbjct: 287 VLLPHVARYNLIANPEKFADIAELMGENITGLSTLDAAEKAIAAITRLSMDIGIPQHLRD 346
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFEN 655
LG D P + L PR+ +E+++A +F
Sbjct: 347 LGVKETDFPYMAEMALKDGN-AFSNPRKGNEQEIAAIFRQ 385
|
| >3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A* Length = 383 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 2e-80
Identities = 87/350 (24%), Positives = 145/350 (41%), Gaps = 40/350 (11%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+G G + D+ + +++D ++K VK D L G+ ++D V
Sbjct: 10 FVNEMGEGSLEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVM 69
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
PT + LE K ++ D I++GGGS D KA L + E DY
Sbjct: 70 PNPTVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGG-EVKDYEGI----- 123
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLGLIDPLHTLS 207
P PL++I TT+GT SE T I D K I +R + P + + DPL +
Sbjct: 124 DKSKKPALPLMSINTTAGTASEMTRFCIITDEVR-HVKMAIVDRHVTPMVSVNDPLLMVG 182
Query: 208 LPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267
+P+ +TA +G D HA E++++ P++D A A I
Sbjct: 183 MPKGLTAATGMDALTHAFEAYSST-------------------AATPITDACALKAASMI 223
Query: 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSD 327
+ K A N D+ AR M A +AG+ F NA + H +++ + G ++
Sbjct: 224 AKNLKTACDNGKDMPAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGG---YYN------ 274
Query: 328 DHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAV 377
+PHG+ + P V + A+ R + +G D++ + +
Sbjct: 275 ----LPHGVCNAVLLPHVLAYNASVVAGRLKDVGVAMGLDIANLGDKEGA 320
|
| >3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A* Length = 383 | Back alignment and structure |
|---|
Score = 188 bits (481), Expect = 4e-54
Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 35/281 (12%)
Query: 376 AVPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGF 434
++ TT+GT SE T I D K I +R + P + + DPL + +P+ +TA +G
Sbjct: 135 SINTTAGTASEMTRFCIITDEVR-HVKMAIVDRHVTPMVSVNDPLLMVGMPKGLTAATGM 193
Query: 435 DVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
D HA E++++ P++D A A I + K A N
Sbjct: 194 DALTHAFEAYSST-------------------AATPITDACALKAASMIAKNLKTACDNG 234
Query: 495 DDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 554
D+ AR M A +AG+ F NA + H +++ + G ++ +PHG+
Sbjct: 235 KDMPAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGG---YYN----------LPHGVCN 281
Query: 555 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLK 614
+ P V + A+ R + +G D++ + + + VR + I L
Sbjct: 282 AVLLPHVLAYNASVVAGRLKDVGVAMGLDIANLGDKEGAEATIQAVRDLAASIGIPANLT 341
Query: 615 VLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFEN 655
LG D+P L L + PR+ ++++ LF +
Sbjct: 342 ELGAKKEDVPLLADHAL-KDACALTNPRQGDQKEVEELFLS 381
|
| >1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* Length = 371 | Back alignment and structure |
|---|
Score = 256 bits (657), Expect = 9e-80
Identities = 80/355 (22%), Positives = 138/355 (38%), Gaps = 45/355 (12%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+ + G + + G + + + + V K + L + +E+FD+V
Sbjct: 20 TDVFFGEKILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVE 79
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
P+ D+ ++A + R+ D + +GGGS +D KA + + + D + K
Sbjct: 80 ENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKH 139
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLGLIDPLHTLS 207
P++ IPTT+GTGSE T SI D E + + P +DP +T S
Sbjct: 140 WL------PVVEIPTTAGTGSEVTPYSILTDPEG-NKRGCT---LMFPVYAFLDPRYTYS 189
Query: 208 LPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267
+ + +T +G D HA+E + + P SD A A++ I
Sbjct: 190 MSDELTLSTGVDALSHAVEGYLSR-------------------KSTPPSDALAIEAMKII 230
Query: 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSD 327
+ +A+ + + EAR M +AS +AG+ G L H L YP++
Sbjct: 231 HRNLPKAI--EGNREARKKMFVASCLAGMVIAQTGTTLAHALGYPLTT---EKG------ 279
Query: 328 DHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSG 382
I HG + M P V PE+ + G + + K +
Sbjct: 280 ----IKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIFGGSLLKFLKELGLYEKVA 330
|
| >1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* Length = 371 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 5e-50
Identities = 61/285 (21%), Positives = 108/285 (37%), Gaps = 59/285 (20%)
Query: 376 AVPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGF 434
+PTT+GTGSE T SI D E + + P +DP +T S+ + +T +G
Sbjct: 145 EIPTTAGTGSEVTPYSILTDPEG-NKRGCTL---MFPVYAFLDPRYTYSMSDELTLSTGV 200
Query: 435 DVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
D HA+E + + P SD A A++ I + +A+ +
Sbjct: 201 DALSHAVEGYLSR-------------------KSTPPSDALAIEAMKIIHRNLPKAI--E 239
Query: 495 DDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 554
+ EAR M +AS +AG+ G L H L YP++ I HG +
Sbjct: 240 GNREARKKMFVASCLAGMVIAQTGTTLAHALGYPLTT---EKG----------IKHGKAT 286
Query: 555 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLK 614
M P V PE+ + G + ++ ++ + +
Sbjct: 287 GMVLPFVMEVMKEEIPEKVDTVNHIFGGS----------------LLKFLKELGL---YE 327
Query: 615 VLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMSV 659
+ +S ++ V + + K P + E + N++ ++ V
Sbjct: 328 KVAVSSEELEKWVEKGS-RAKHLKNTPGTFTPEKIRNIYREALGV 371
|
| >1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A* Length = 386 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 5e-78
Identities = 84/350 (24%), Positives = 142/350 (40%), Gaps = 40/350 (11%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
T G G + ++ Q+ ++TD L + V D + G+ + ++D V
Sbjct: 10 ETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVV 69
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEF-LDYVNAPIGK 147
PT E ++ D IA+GGGS DTCKA + +PE G
Sbjct: 70 PNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLE----GL 125
Query: 148 GKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLS 207
P P P++AIPTT+GT +E T + E + K + P + ID
Sbjct: 126 S-PTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFIDADMMDG 184
Query: 208 LPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267
+P + A +G D HA+E + G ++D A++ I
Sbjct: 185 MPPALKAATGVDALTHAIEGYITR-------------------GAWALTDALHIKAIEII 225
Query: 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSD 327
+ +V D +A M L +AG+GF N G+ L HG+++P+ ++
Sbjct: 226 AGALRGSV--AGDKDAGEEMALGQYVAGMGFSNVGLGLVHGMAHPLGA---FYN------ 274
Query: 328 DHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAV 377
PHG++ + P V + A + E++ + A ++G V + +A
Sbjct: 275 ----TPHGVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEAR 320
|
| >1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A* Length = 386 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 6e-52
Identities = 67/280 (23%), Positives = 114/280 (40%), Gaps = 35/280 (12%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT+GT +E T + E + K + P + ID +P + A +G D
Sbjct: 137 AIPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVD 196
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E + G ++D A++ I + +V
Sbjct: 197 ALTHAIEGYITR-------------------GAWALTDALHIKAIEIIAGALRGSV--AG 235
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
D +A M L +AG+GF N G+ L HG+++P+ ++ PHG++
Sbjct: 236 DKDAGEEMALGQYVAGMGFSNVGLGLVHGMAHPLGA---FYN----------TPHGVANA 282
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P V + A + E++ + A ++G V + +A + V + I L+
Sbjct: 283 ILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRD 342
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFEN 655
+G DIPAL L T PRE + ED+ L+
Sbjct: 343 VGVRKEDIPALAQAAL-DDVCTGGNPREATLEDIVELYHT 381
|
| >3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans} Length = 375 | Back alignment and structure |
|---|
Score = 224 bits (572), Expect = 2e-67
Identities = 66/363 (18%), Positives = 113/363 (31%), Gaps = 59/363 (16%)
Query: 22 YAFEMASSTIRIGPGVTREVG---MDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHG 78
F+ + G G ++ V + D K +
Sbjct: 23 KNFKCVP-KMIFGRGSFVQLDTVLEQERTDANDFVVFLVDDVHQH----KPLAARVPNKA 77
Query: 79 VKFELFDKVRVEPTGDSFLEATKFVR---SVQCDAFIAVGGGSVIDTCKAANLYYCDPEA 135
++ V EPT E T V+ + + + +GGGS +D KA +L +P
Sbjct: 78 HDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPG- 136
Query: 136 EFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALK 194
+Y G + P I IPT SGTG+E + ++ K G+ +
Sbjct: 137 SSSEYQ----GWDL-IKNPAVHHIGIPTVSGTGAEASRTAVLCGPV---RKLGLNSDYTV 188
Query: 195 PTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNP 254
++D +P Y+G D F H +ES N
Sbjct: 189 FDQIIMDSELIAGVPTDQWFYTGMDCFIHCVESLQGT-------------------YLNE 229
Query: 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPIS 314
+ +A ++ R VY D E + +AS M G+ + V CH +SY +
Sbjct: 230 FAKAFAEKSMDLCR-----EVYLDDHPEKDDKLMMASYMGGMSIAYSQVGACHAVSYGLG 284
Query: 315 GNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKA 374
HG+ ++ + F + E+ + +
Sbjct: 285 Y---VLG----------YHHGIGNCLAFDVLEEFYPE-GVAEFRKMMEIHNITLPKNICK 330
Query: 375 DAV 377
D
Sbjct: 331 DLP 333
|
| >3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans} Length = 375 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 8e-45
Identities = 41/254 (16%), Positives = 77/254 (30%), Gaps = 43/254 (16%)
Query: 376 AVPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGF 434
+PT SGTG+E + ++ K G+ + ++D +P Y+G
Sbjct: 156 GIPTVSGTGAEASRTAVLCGPV---RKLGLNSDYTVFDQIIMDSELIAGVPTDQWFYTGM 212
Query: 435 DVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
D F H +ES N + +A ++ R VY
Sbjct: 213 DCFIHCVESLQGT-------------------YLNEFAKAFAEKSMDLCR-----EVYLD 248
Query: 495 DDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 554
D E + +AS M G+ + V CH +SY + HG+
Sbjct: 249 DHPEKDDKLMMASYMGGMSIAYSQVGACHAVSYGLGY---VLG----------YHHGIGN 295
Query: 555 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKI-ENGL 613
++ + F + E+ + + D + M + +
Sbjct: 296 CLAFDVLEEFYPE-GVAEFRKMMEIHNITLPKNICKDLPDETIAKMVAVTKSMGPLWDNV 354
Query: 614 KVLGYTSADIPALV 627
G+ ++
Sbjct: 355 YGKGWEEKVTDEML 368
|
| >3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha} Length = 358 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 3e-62
Identities = 76/366 (20%), Positives = 127/366 (34%), Gaps = 70/366 (19%)
Query: 13 MSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLA-PVKATL 71
M + P + +E ++ + G G + +V ++ + A+R V+ P+ A + L
Sbjct: 2 MKSSQP---FIYEAHAARVVFGAGSSSQVAAEVERLGAKRALVLCTPNQQAEAERIADLL 58
Query: 72 DSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131
+ ++ + +S +AT R D +AVGGGS KA L
Sbjct: 59 G-----PLSAGVYAGAVMHVPIESARDATARAREAGADCAVAVGGGSTTGLGKAIAL--- 110
Query: 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANR 191
P++AIPTT GSE T V K +
Sbjct: 111 ---------------------ETGMPIVAIPTTYA-GSEVTPVYGLTEA--GTKRTGRDP 146
Query: 192 ALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQG 251
+ P + DP T+ LP ++ S + HA E A +
Sbjct: 147 RVLPRTVIYDPALTVGLPRGLSVTSALNAIAHAAEGLYA-------------------RD 187
Query: 252 QNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSY 311
NPV + A ++ + + DL+ARS + + G G G+ L H L +
Sbjct: 188 ANPVMSLMAEEGIRALAAGIPAVFNDPADLDARSQCLYGAWLCGTVLGGVGMALHHKLCH 247
Query: 312 PISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRV 371
+ G +F+ +PH + + P + AA+ PE GA
Sbjct: 248 TLGG---SFN----------LPHAETHTIVLPHALAYNAAAVPEAMARIRRATGAGEQSA 294
Query: 372 KKADAV 377
A +
Sbjct: 295 --AATL 298
|
| >3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha} Length = 358 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 2e-45
Identities = 57/280 (20%), Positives = 91/280 (32%), Gaps = 47/280 (16%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT GSE T V K + + P + DP T+ LP ++ S +
Sbjct: 118 AIPTTYA-GSEVTPVYGLTEA--GTKRTGRDPRVLPRTVIYDPALTVGLPRGLSVTSALN 174
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA E A + NPV + A ++ + +
Sbjct: 175 AIAHAAEGLYA-------------------RDANPVMSLMAEEGIRALAAGIPAVFNDPA 215
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
DL+ARS + + G G G+ L H L + + G +F+ +PH +
Sbjct: 216 DLDARSQCLYGAWLCGTVLGGVGMALHHKLCHTLGG---SFN----------LPHAETHT 262
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P + AA+ PE GA A T+ + L+
Sbjct: 263 IVLPHALAYNAAAVPEAMARIRRATGAGEQSA---------AATLFDLAQRHGAPVALRD 313
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFEN 655
+G D+ L PR E + L +
Sbjct: 314 IGMREEDLDRAADIALASPY---WNPRPIEREPIRALLQA 350
|
| >3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str} Length = 353 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 9e-62
Identities = 65/350 (18%), Positives = 120/350 (34%), Gaps = 65/350 (18%)
Query: 20 KEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLA-PVKATLDSLTRHG 78
+ + + A + I G + +V ++ + R V++ P A + + L
Sbjct: 4 QPFVYMAAPARIVFSAGSSADVAEEIRRLGLSRALVLSTPQQKGDAEALASRLG-----R 58
Query: 79 VKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFL 138
+ +F + + + A + R+ D +++GGGS KA L
Sbjct: 59 LAAGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIAL---------- 108
Query: 139 DYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLG 198
I IPTT GSE T + + E KT + + P +
Sbjct: 109 --------------RTDAAQIVIPTTYA-GSEVTPI-LGQTEN-GVKTTMRGPEILPEVV 151
Query: 199 LIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258
+ D TL LP ++ SG + HA E+ A + +NP++ +
Sbjct: 152 IYDAELTLGLPVAISMTSGLNAMAHAAEALYA-------------------RDRNPIASM 192
Query: 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVK 318
A L+ + + D+ AR + + G G G+ L H L + + G
Sbjct: 193 MAVEGLRAMIEALPVVRQAPHDIGARETALYGAWLCGTVLGAVGMSLHHKLCHTLGG--- 249
Query: 319 TFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 368
+ +PH + + P + ++P A L+G
Sbjct: 250 SLD----------LPHAETHAVLLPHTIAYVEEAAPNLLAPLAALVGGRA 289
|
| >3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str} Length = 353 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 1e-44
Identities = 50/280 (17%), Positives = 95/280 (33%), Gaps = 50/280 (17%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
+PTT GSE T + + E KT + + P + + D TL LP ++ SG +
Sbjct: 116 VIPTTYA-GSEVTPI-LGQTEN-GVKTTMRGPEILPEVVIYDAELTLGLPVAISMTSGLN 172
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA E+ A + +NP++ + A L+ + +
Sbjct: 173 AMAHAAEALYA-------------------RDRNPIASMMAVEGLRAMIEALPVVRQAPH 213
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
D+ AR + + G G G+ L H L + + G + +PH +
Sbjct: 214 DIGARETALYGAWLCGTVLGAVGMSLHHKLCHTLGG---SLD----------LPHAETHA 260
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
+ P + ++P A L+G + + ++ + L
Sbjct: 261 VLLPHTIAYVEEAAPNLLAPLAALVGGRA------------GAGLFDFAARLGAPSSLAA 308
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFEN 655
LG + D+ + PR + + +L +
Sbjct: 309 LGVGADDLDPMAELATANPY---WCPRPIEKTAIRDLLQR 345
|
| >3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} Length = 364 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 4e-61
Identities = 70/352 (19%), Positives = 117/352 (33%), Gaps = 66/352 (18%)
Query: 17 TPDKEYAFEMASSTIRIGPG-VTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLT 75
+ + + G G + + ++ + +V V+ +A +
Sbjct: 3 NNSLAFNHDTLPQKVMFGYGKSSAFLKQEVERRGSAKVMVIAGEREMSIA--HKVASEIE 60
Query: 76 RHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEA 135
D+V + + A + D + VGGGS I KA +
Sbjct: 61 VAIW----HDEVVMHVPIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAM------- 109
Query: 136 EFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKP 195
P++AIPTT GSE T V KT + + P
Sbjct: 110 -----------------TTALPIVAIPTTYA-GSEATNVWGLTEA--ARKTTGVDLKVLP 149
Query: 196 TLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPV 255
+ D T+SLP ++ SG + H ++S +P+
Sbjct: 150 ETVIYDSELTMSLPVEMSVASGLNGLAHCIDSLWG-------------------PNADPI 190
Query: 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISG 315
+ V A ++ + Q + V N +E R + +A V F +AG L H + + + G
Sbjct: 191 NAVLAAEGIRALNQGLPKIVANPHSIEGRDEALYGAYLAAVSFASAGSGLHHKICHTLGG 250
Query: 316 NVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367
TF+ +PH + P V F A +PE AA G D
Sbjct: 251 ---TFN----------LPHAQTHATVLPYVLAFNAGDAPEAERRAAAAFGTD 289
|
| >3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} Length = 364 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 6e-46
Identities = 63/283 (22%), Positives = 106/283 (37%), Gaps = 48/283 (16%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
A+PTT GSE T V KT + + P + D T+SLP ++ SG +
Sbjct: 117 AIPTTYA-GSEATNVWGLTEA--ARKTTGVDLKVLPETVIYDSELTMSLPVEMSVASGLN 173
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
H ++S +P++ V A ++ + Q + V N
Sbjct: 174 GLAHCIDSLWG-------------------PNADPINAVLAAEGIRALNQGLPKIVANPH 214
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
+E R + +A V F +AG L H + + + G TF+ +PH +
Sbjct: 215 SIEGRDEALYGAYLAAVSFASAGSGLHHKICHTLGG---TFN----------LPHAQTHA 261
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
P V F A +PE AA G D + ++ + L
Sbjct: 262 TVLPYVLAFNAGDAPEAERRAAAAFGTDT-----------ALEGLQRLRLSVNAPKRLSD 310
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMS 658
G+ ++ I V TL ++ PR + E+L+ L E +++
Sbjct: 311 YGFEASGIAEAVDVTLE--KVPANNPRPVTRENLSRLLEAALN 351
|
| >1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2 Length = 407 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 6e-57
Identities = 84/364 (23%), Positives = 148/364 (40%), Gaps = 53/364 (14%)
Query: 24 FEMASST-IRIGPGVTREVGMDMVNMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKF 81
F + T I G G ++G ++ N ++V + + K +DSL +HG+++
Sbjct: 16 FVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEW 75
Query: 82 ELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK--AANLYYCDPEAEFLD 139
V+ P EA + + + +A + VGGGSV+D+ K AA Y E + D
Sbjct: 76 VEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALY---EGDIWD 132
Query: 140 YVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGL 199
+ L P+ + T S TG+E G ++ E K K G++++AL P + +
Sbjct: 133 AF----IGKYQIEKAL-PIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSI 187
Query: 200 IDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259
IDP +LP+ T Y D H LE + +S+
Sbjct: 188 IDPSVQFTLPKEQTVYGAVDAISHILEYYFD-------------------GSSPEISNEI 228
Query: 260 ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVH----LCHGLSYPISG 315
A ++TI + +R + DD EAR+++ ++ +A G G CH + + +S
Sbjct: 229 AEGTIRTIMKMTERLIEKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSA 288
Query: 316 NVKTFHPAGYSDDHPIIPHG--LSVVMSAPAVFNFTAASSPERHIE-AAELLGADVSRVK 372
+ I HG L++V PA + +P + A ++ G + +
Sbjct: 289 ----LYD---------IAHGAGLAIVF--PAWMKYVYRKNPAQFERFAKKIFGFEGEGEE 333
Query: 373 KADA 376
Sbjct: 334 LILK 337
|
| >1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2 Length = 407 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 1e-38
Identities = 61/296 (20%), Positives = 112/296 (37%), Gaps = 51/296 (17%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
V T S TG+E G ++ E K K G++++AL P + +IDP +LP+ T Y D
Sbjct: 148 DVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVD 207
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
H LE + +S+ A ++TI + +R + D
Sbjct: 208 AISHILEYYFD-------------------GSSPEISNEIAEGTIRTIMKMTERLIEKPD 248
Query: 496 DLEARSHMHLASAMAGVGFGNAGVH----LCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
D EAR+++ ++ +A G G CH + + +S + I HG
Sbjct: 249 DYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSA----LYD---------IAHG 295
Query: 552 --LSVVMSAPAVFNFTAASSPERHIE-AAELLGADVSRVKKADAGKLLADTVRGYMDQMK 608
L++V PA + +P + A ++ G + + G + + ++ ++
Sbjct: 296 AGLAIVF--PAWMKYVYRKNPAQFERFAKKIFGFEGEGEELILKG---IEAFKNWLKKVG 350
Query: 609 IENGLKVLGYTSADIPALV------TGTLPQHRITKL-APREQSEEDLANLFENSM 657
LK G DI +V + + L ED+ + + +
Sbjct: 351 APVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAA 406
|
| >1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2 Length = 408 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 1e-56
Identities = 70/349 (20%), Positives = 128/349 (36%), Gaps = 53/349 (15%)
Query: 24 FEMASST-IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSK----LAPVKATLDSLTRHG 78
F + + T I G G + + RV + K L V L G
Sbjct: 25 FNLHTPTRILFGKGAIAGLREQI--PHDARVLITYGGGSVKKTGVLDQVLDALK-----G 77
Query: 79 VKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKA-ANLYYCDPEAEF 137
+ F + P ++ + A K VR + +AVGGGSV+D K A +
Sbjct: 78 MDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDP 137
Query: 138 LDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTL 197
+ GK + + P+ + T TGSE+ ++ + K + ++P
Sbjct: 138 WHILQ---TGGKEIKSAI-PMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVF 193
Query: 198 GLIDPLHTLSLPERVTAYSGFDVFCHALES-FTALPYTERTPCPTDPLLRPAYQGQNPVS 256
++DP++T +LP R A D F H +E T +
Sbjct: 194 AVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVT-------------------KPVDAKIH 234
Query: 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHL---CHGLSYPI 313
D +A L T+ + +A+ ++ + R+++ A+ A G AGV H L + +
Sbjct: 235 DRFAEGILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHEL 294
Query: 314 SGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 362
+ + H ++ + PA++N + + ++ AE
Sbjct: 295 TA---MHG----------LDHAQTLAIVLPALWNEKRDTKRAKLLQYAE 330
|
| >1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2 Length = 408 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-41
Identities = 49/285 (17%), Positives = 105/285 (36%), Gaps = 37/285 (12%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
V T TGSE+ ++ + K + ++P ++DP++T +LP R A D
Sbjct: 156 CVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVD 215
Query: 436 VFCHALES-FTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
F H +E T + D +A L T+ + +A+
Sbjct: 216 AFVHTVEQYVT-------------------KPVDAKIHDRFAEGILLTLIEDGPKALKEP 256
Query: 495 DDLEARSHMHLASAMAGVGFGNAGVHL---CHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
++ + R+++ A+ A G AGV H L + ++ + H
Sbjct: 257 ENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTA---MHG----------LDHA 303
Query: 552 LSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIEN 611
++ + PA++N + + ++ AE + +++ + R + +Q+ +
Sbjct: 304 QTLAIVLPALWNEKRDTKRAKLLQYAERVW-NITEGSDDERIDAAIAATRNFFEQLGVPT 362
Query: 612 GLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENS 656
L G + IPAL+ + + + ++E +
Sbjct: 363 HLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAA 407
|
| >1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* Length = 370 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 7e-39
Identities = 63/347 (18%), Positives = 115/347 (33%), Gaps = 52/347 (14%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+ G V ++ + + + V+ D + K+A ++ L + + E
Sbjct: 11 AKYVQGKNVITKIA-NYLEGIGNKTVVIADEIVWKIA-GHTIVNELKKGNIAAEEV-VFS 67
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
E + + R + I VGGG +DT KA A+ LD
Sbjct: 68 GEASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAV--------ADELD--------- 110
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
++ +PT + T + T+ +S+ Y P L L+D +
Sbjct: 111 -------AYIVIVPTAASTDAPTSALSVI-YSDDGVFESYRFYKKNPDLVLVDTKIIANA 162
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P R+ A D +E+ + + +T P + ++ A QT+
Sbjct: 163 PPRLLASGIADALATWVEARSVIKSGGKTMAGGIPTI---------AAEAIAEKCEQTLF 213
Query: 269 QYFKRA---VYNQDDLEARSHMHLA-SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAG 324
+Y K A V + A + A + ++G+GF + G+ H + + H
Sbjct: 214 KYGKLAYESVKAKVVTPALEAVVEANTLLSGLGFESGGLAAAHAIHNGFTALEGEIHHL- 272
Query: 325 YSDDHPIIPHGLSVVMS--APAVFNFTAASSPERHIEAAELLGADVS 369
HG V + ER+IE L V+
Sbjct: 273 --------THGEKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVT 311
|
| >1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* Length = 370 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 2e-20
Identities = 50/285 (17%), Positives = 90/285 (31%), Gaps = 50/285 (17%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
VPT + T + T+ +S+ Y P L L+D + P R+ A D
Sbjct: 115 IVPTAASTDAPTSALSVI-YSDDGVFESYRFYKKNPDLVLVDTKIIANAPPRLLASGIAD 173
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA---VY 492
+E+ + + +T P + ++ A QT+ +Y K A V
Sbjct: 174 ALATWVEARSVIKSGGKTMAGGIPTI---------AAEAIAEKCEQTLFKYGKLAYESVK 224
Query: 493 NQDDLEARSHMHLA-SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
+ A + A + ++G+GF + G+ H + + H HG
Sbjct: 225 AKVVTPALEAVVEANTLLSGLGFESGGLAAAHAIHNGFTALEGEIHHL---------THG 275
Query: 552 LSVVMS--APAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKI 609
V + ER+IE L V+ L D
Sbjct: 276 EKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVT----------LED----------- 314
Query: 610 ENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
+K+ + DI + + T + +D+A+
Sbjct: 315 ---IKLKDASREDILKVAKAATAE-GETIHNAFNVTADDVADAIF 355
|
| >1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2 Length = 376 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 1e-37
Identities = 55/314 (17%), Positives = 103/314 (32%), Gaps = 53/314 (16%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
G G + + ++ +R V+ D + K + S T+ V ++F
Sbjct: 21 GRYVQGAGAINILE-EELSRFGERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFGGEC 79
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
+ +E + + D + +GGG +DT KA A L
Sbjct: 80 SDEE----IERLSGLVEEETDVVVGIGGGKTLDTAKAV--------AYKLK--------- 118
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
KP++ +PT + T + + +S+ Y P P + L+D
Sbjct: 119 -------KPVVIVPTIASTDAPCSALSVI-YTPNGEFKRYLFLPRNPDVVLVDTEIVAKA 170
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P R D E+ + C + + + AR +T+
Sbjct: 171 PARFLVAGMGDALATWFEAES---------CKQKYAPNMTGRLGSMTAYALARLCYETLL 221
Query: 269 QY---FKRAVYNQDDLEARSHMHLA-SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAG 324
+Y KR+V + A + A + ++G+GF + G+ H + ++ T
Sbjct: 222 EYGVLAKRSVEEKSVTPALEKIVEANTLLSGLGFESGGLAAAHAIHNGLTVLENTHK--- 278
Query: 325 YSDDHPIIPHGLSV 338
HG V
Sbjct: 279 -------YLHGEKV 285
|
| >1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2 Length = 376 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-19
Identities = 43/286 (15%), Positives = 88/286 (30%), Gaps = 52/286 (18%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
VPT + T + + +S+ Y P P + L+D P R D
Sbjct: 123 IVPTIASTDAPCSALSVI-YTPNGEFKRYLFLPRNPDVVLVDTEIVAKAPARFLVAGMGD 181
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQY---FKRAVY 492
E+ + C + + + AR +T+ +Y KR+V
Sbjct: 182 ALATWFEAES---------CKQKYAPNMTGRLGSMTAYALARLCYETLLEYGVLAKRSVE 232
Query: 493 NQDDLEARSHMHLA-SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
+ A + A + ++G+GF + G+ H + ++ T HG
Sbjct: 233 EKSVTPALEKIVEANTLLSGLGFESGGLAAAHAIHNGLTVLENTHK----------YLHG 282
Query: 552 LSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIEN 611
V + A + P + IE V + +++ +
Sbjct: 283 EKVAIGVLA--SLFLTDKPRKMIEE-----------------------VYSFCEEVGLPT 317
Query: 612 GLKVLGYTS---ADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
L +G D+ + ++ P+ + +D+ +
Sbjct: 318 TLAEIGLDGVSDEDLMKVAEKACDKNETIHNEPQPVTSKDVFFALK 363
|
| >3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti} Length = 387 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 8e-33
Identities = 45/314 (14%), Positives = 82/314 (26%), Gaps = 50/314 (15%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+ G ++ + +R V+ D L + ++FE F
Sbjct: 32 NKYIQRAGEIDKLA-AYLAPLGKRALVLIDRVLFDALSERIGKSCGDSLDIRFERFGG-- 88
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
E K D + VGGG DT K A
Sbjct: 89 -ECCTSEIERVRKVAIEHGSDILVGVGGGKTADTAKIV--------AIDTG--------- 130
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
++ PT + T + + +++ Y P ++D +
Sbjct: 131 -------ARIVIAPTIASTDAPCSAIAVR-YTEHGVYEEALRLPRNPDAVVVDSALVAAA 182
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P R D E+ + + A AR +
Sbjct: 183 PARFLVAGIGDALSTWFEARSNIESRTDNYVAGGFPATEAGMAI-------ARHCQDVLT 235
Query: 269 QYFKRA---VYNQDDLEARSH-MHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAG 324
+ +A V A + + + ++G+GF N G HG+ ++ +
Sbjct: 236 RDAVKAKIAVEAGLLTPAVENIIEANTLLSGLGFENCGCSAAHGIHDGLTVLEEVHG--- 292
Query: 325 YSDDHPIIPHGLSV 338
HG V
Sbjct: 293 -------YFHGEKV 299
|
| >3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti} Length = 387 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 1e-17
Identities = 37/282 (13%), Positives = 71/282 (25%), Gaps = 48/282 (17%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
PT + T + + +++ Y P ++D + P R D
Sbjct: 135 IAPTIASTDAPCSAIAVR-YTEHGVYEEALRLPRNPDAVVVDSALVAAAPARFLVAGIGD 193
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA---VY 492
E+ + + A AR + + +A V
Sbjct: 194 ALSTWFEARSNIESRTDNYVAGGFPATEAGMAI-------ARHCQDVLTRDAVKAKIAVE 246
Query: 493 NQDDLEARSH-MHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
A + + + ++G+GF N G HG+ ++ + HG
Sbjct: 247 AGLLTPAVENIIEANTLLSGLGFENCGCSAAHGIHDGLTVLEEVHG----------YFHG 296
Query: 552 LSVVMS--APAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKI 609
V + + E I +G LAD
Sbjct: 297 EKVAFGTLCLLMLENRDRAEIEAMIRFCRSVGLPTK----------LAD----------- 335
Query: 610 ENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLAN 651
L ++ A I + I P + + +
Sbjct: 336 ---LGIVDDVPAKIGRVAEAACRPGNIIYATPVTITVPAVRD 374
|
| >1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe} Length = 450 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 7e-30
Identities = 54/311 (17%), Positives = 97/311 (31%), Gaps = 44/311 (14%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
G M + + V+ D ++ + +DSL+++G+
Sbjct: 70 QKYVQGRHAFTRSYMYVKKWATKSAVVLADQNVWNIC-ANKIVDSLSQNGMTVTKL-VFG 127
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
E + + K I VGGG +D+ K A ++
Sbjct: 128 GEASLVELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYI--------AHSMN--------- 169
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
P I PTT+ + + T+ +S+ Y P + L P L ID +
Sbjct: 170 -------LPSIICPTTASSDAATSSLSVI-YTPDGQFQKYSFYPLNPNLIFIDTDVIVRA 221
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P R D +E+ + + + + D ++AL I
Sbjct: 222 PVRFLISGIGDALSTWVETESVIRSNSTSFAGGVASIA-GRYIARACKDTLEKYALSAI- 279
Query: 269 QYFKRAVYNQDDLEARSHMHLAS-AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSD 327
+ EA ++ A+ M+G+GF N G+ H + ++ H
Sbjct: 280 ----LSNTRGVCTEAFENVVEANTLMSGLGFENGGLAAAHAIHNGMTAIHGPVHRL---- 331
Query: 328 DHPIIPHGLSV 338
HG V
Sbjct: 332 -----MHGEKV 337
|
| >1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe} Length = 450 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 9e-15
Identities = 43/283 (15%), Positives = 83/283 (29%), Gaps = 45/283 (15%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
PTT+ + + T+ +S+ Y P + L P L ID + P R D
Sbjct: 174 ICPTTASSDAATSSLSVI-YTPDGQFQKYSFYPLNPNLIFIDTDVIVRAPVRFLISGIGD 232
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
+E+ + + + + D ++AL I +
Sbjct: 233 ALSTWVETESVIRSNSTSFAGGVASIA-GRYIARACKDTLEKYALSAIL-----SNTRGV 286
Query: 496 DLEARSHMHLAS-AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 554
EA ++ A+ M+G+GF N G+ H + ++ H HG V
Sbjct: 287 CTEAFENVVEANTLMSGLGFENGGLAAAHAIHNGMTAIHGPVHRL---------MHGEKV 337
Query: 555 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLK 614
L + + +M + + L+
Sbjct: 338 AYGTLV---------------QVVLEDWPLEDFNN----------LASFMAKCHLPITLE 372
Query: 615 VLGYTSADIPALVT---GTLPQHRITKLAPREQSEEDLANLFE 654
LG + L+ TL ++ + +A+ +
Sbjct: 373 ELGIPNVTDEELLMVGRATLRPDESIHNMSKKFNPSQIADAIK 415
|
| >3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} Length = 354 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 5e-17
Identities = 42/288 (14%), Positives = 88/288 (30%), Gaps = 53/288 (18%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+ +G +G + +RV + + +L + S+ ++ E + V+
Sbjct: 13 LILEVGNNKIYNIGQIIKKGNFKRVSLYFGEGIYELF-GETIEKSIKSSNIEIEAVETVK 71
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
D + F + DA I +GGG ID K A
Sbjct: 72 -NIDFDE-IGTNAFKIPAEVDALIGIGGGKAIDAVKYM--------AFLRK--------- 112
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
P I++PT++ ++ V+ +T + + P ++D
Sbjct: 113 -------LPFISVPTSTSNDGFSSPVASLLIN--GKRTSVPAKT--PDGIVVDIDVIKGS 161
Query: 209 PERVTAYSGF-DVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267
PE+ SG D+ + + ++ + D + +++
Sbjct: 162 PEKFIY-SGIGDLVSNITALYDW--------------KFEEENHKSIIDDFAVMISKKSV 206
Query: 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISG 315
+ + + D + + M G+ G S P SG
Sbjct: 207 NSFVRTDFKSIKDEVFLKELVDSLTMNGIAME------IAGNSSPASG 248
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 4e-05
Identities = 67/503 (13%), Positives = 142/503 (28%), Gaps = 151/503 (30%)
Query: 31 IRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE 90
+ + + E ++M+ Q++ DP+ + + + + L H ++ EL ++ +
Sbjct: 187 LNLKNCNSPETVLEML----QKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSK 241
Query: 91 PTGDSFL-----EATKFVRS--VQCDAFIAVGGGSVIDTCKAANLYYC----------DP 133
P + L + K + + C + V D AA +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 134 EAE--FLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETT-GVSIFDY--EPLKAKTGI 188
E + L Y++ + P + S G++ +D K
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPR-RL---SIIAESIRDGLATWDNWKHVNCDKL-- 355
Query: 189 ANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPA 248
++ +L +++P E + VF P PT L
Sbjct: 356 -TTIIESSLNVLEP------AEYRKMFDRLSVF----------P--PSAHIPTILLSL-- 394
Query: 249 YQGQNPVSDVWARFALQTIR----QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVH 304
+W + + K ++ + E+ + ++
Sbjct: 395 ---------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-------------SIY 432
Query: 305 LCHGLSYPISGNVKTFH---------PAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPE 355
L L + N H P + D I P+ ++
Sbjct: 433 L--ELKVKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF------YSHIG----- 478
Query: 356 RHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIF-DYEPLKAKTGIANRALKPTLG 414
H++ E ++ +F D+ L+ K + A +
Sbjct: 479 HHLKNIE-------HPERMTLFRM------------VFLDFRFLEQKIRHDSTAWNASGS 519
Query: 415 LIDPLHTLSLPERVTAYSGF--------DVFCHALESFTALPYTE----RTPCPTDPLLR 462
+++ L L Y + + +A+ F LP E + TD LLR
Sbjct: 520 ILNTLQQLKF------YKPYICDNDPKYERLVNAILDF--LPKIEENLICSKY-TD-LLR 569
Query: 463 PAYQGQNPVSDVWARFALQTIRQ 485
A ++ + +Q
Sbjct: 570 IAL--MAEDEAIFE----EAHKQ 586
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 660 | |||
| 3ox4_A | 383 | Alcohol dehydrogenase 2; iron, NAD, oxidoreductase | 100.0 | |
| 3bfj_A | 387 | 1,3-propanediol oxidoreductase; opportunistic path | 100.0 | |
| 3jzd_A | 358 | Iron-containing alcohol dehydrogenase; YP_298327.1 | 100.0 | |
| 3hl0_A | 353 | Maleylacetate reductase; structur genomics, PSI-2, | 100.0 | |
| 1rrm_A | 386 | Lactaldehyde reductase; structural genomics, dehyd | 100.0 | |
| 1vlj_A | 407 | NADH-dependent butanol dehydrogenase; TM0820, stru | 100.0 | |
| 3iv7_A | 364 | Alcohol dehydrogenase IV; NP_602249.1, iron-contai | 100.0 | |
| 1oj7_A | 408 | Hypothetical oxidoreductase YQHD; structural genom | 100.0 | |
| 1o2d_A | 371 | Alcohol dehydrogenase, iron-containing; TM0920, st | 100.0 | |
| 3rf7_A | 375 | Iron-containing alcohol dehydrogenase; structural | 100.0 | |
| 3uhj_A | 387 | Probable glycerol dehydrogenase; structural genomi | 100.0 | |
| 1kq3_A | 376 | Glycerol dehydrogenase; structural genomics, joint | 100.0 | |
| 1jq5_A | 370 | Glycerol dehydrogenase; oxidoreductase, NAD, glyce | 100.0 | |
| 1ta9_A | 450 | Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosa | 100.0 | |
| 3ce9_A | 354 | Glycerol dehydrogenase; NP_348253.1, 3-dehydroquin | 100.0 | |
| 1xah_A | 354 | Sadhqs, 3-dehydroquinate synthase; shikimate pathw | 100.0 | |
| 2gru_A | 368 | 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2 | 100.0 | |
| 1sg6_A | 393 | Pentafunctional AROM polypeptide; shikimate pathwa | 100.0 | |
| 3clh_A | 343 | 3-dehydroquinate synthase; shikimate pathway, arom | 100.0 | |
| 3okf_A | 390 | 3-dehydroquinate synthase; structural genomics, ce | 100.0 | |
| 1ujn_A | 348 | Dehydroquinate synthase; riken structu genomics/pr | 100.0 | |
| 3qbe_A | 368 | 3-dehydroquinate synthase; shikimate pathway, myco | 100.0 | |
| 2gru_A | 368 | 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2 | 99.76 | |
| 1xah_A | 354 | Sadhqs, 3-dehydroquinate synthase; shikimate pathw | 99.75 | |
| 1sg6_A | 393 | Pentafunctional AROM polypeptide; shikimate pathwa | 99.73 | |
| 3rf7_A | 375 | Iron-containing alcohol dehydrogenase; structural | 99.71 | |
| 3clh_A | 343 | 3-dehydroquinate synthase; shikimate pathway, arom | 99.66 | |
| 3jzd_A | 358 | Iron-containing alcohol dehydrogenase; YP_298327.1 | 99.55 | |
| 3iv7_A | 364 | Alcohol dehydrogenase IV; NP_602249.1, iron-contai | 99.55 | |
| 3hl0_A | 353 | Maleylacetate reductase; structur genomics, PSI-2, | 99.52 | |
| 1ujn_A | 348 | Dehydroquinate synthase; riken structu genomics/pr | 99.48 | |
| 3ox4_A | 383 | Alcohol dehydrogenase 2; iron, NAD, oxidoreductase | 99.48 | |
| 1oj7_A | 408 | Hypothetical oxidoreductase YQHD; structural genom | 99.44 | |
| 1vlj_A | 407 | NADH-dependent butanol dehydrogenase; TM0820, stru | 99.43 | |
| 1rrm_A | 386 | Lactaldehyde reductase; structural genomics, dehyd | 99.41 | |
| 3bfj_A | 387 | 1,3-propanediol oxidoreductase; opportunistic path | 99.39 | |
| 3uhj_A | 387 | Probable glycerol dehydrogenase; structural genomi | 99.38 | |
| 1o2d_A | 371 | Alcohol dehydrogenase, iron-containing; TM0920, st | 99.38 | |
| 1kq3_A | 376 | Glycerol dehydrogenase; structural genomics, joint | 99.32 | |
| 1jq5_A | 370 | Glycerol dehydrogenase; oxidoreductase, NAD, glyce | 99.31 | |
| 1ta9_A | 450 | Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosa | 99.28 | |
| 3okf_A | 390 | 3-dehydroquinate synthase; structural genomics, ce | 99.18 | |
| 3ce9_A | 354 | Glycerol dehydrogenase; NP_348253.1, 3-dehydroquin | 99.06 | |
| 3qbe_A | 368 | 3-dehydroquinate synthase; shikimate pathway, myco | 99.01 | |
| 1u11_A | 182 | PURE (N5-carboxyaminoimidazole ribonucleotide MUT; | 96.73 | |
| 3oow_A | 166 | Phosphoribosylaminoimidazole carboxylase,catalyic; | 96.69 | |
| 3ors_A | 163 | N5-carboxyaminoimidazole ribonucleotide mutase; is | 96.62 | |
| 3lp6_A | 174 | Phosphoribosylaminoimidazole carboxylase catalyti; | 96.61 | |
| 3trh_A | 169 | Phosphoribosylaminoimidazole carboxylase carboxylt | 96.54 | |
| 3kuu_A | 174 | Phosphoribosylaminoimidazole carboxylase catalyti | 96.44 | |
| 4grd_A | 173 | N5-CAIR mutase, phosphoribosylaminoimidazole carbo | 96.44 | |
| 1o4v_A | 183 | Phosphoribosylaminoimidazole mutase PURE; structur | 96.4 | |
| 3rg8_A | 159 | Phosphoribosylaminoimidazole carboxylase, PURE PR; | 96.39 | |
| 1xmp_A | 170 | PURE, phosphoribosylaminoimidazole carboxylase; pu | 96.39 | |
| 4b4k_A | 181 | N5-carboxyaminoimidazole ribonucleotide mutase; is | 95.46 | |
| 2h31_A | 425 | Multifunctional protein ADE2; alpha-beta-alpha, li | 94.96 | |
| 2bon_A | 332 | Lipid kinase; DAG kinase, transferase; 1.90A {Esch | 94.3 | |
| 2ywx_A | 157 | Phosphoribosylaminoimidazole carboxylase catalyti; | 93.79 | |
| 2qv7_A | 337 | Diacylglycerol kinase DGKB; alpha-beta domain 1, b | 92.7 | |
| 1u0t_A | 307 | Inorganic polyphosphate/ATP-NAD kinase; alpha-beta | 92.23 | |
| 2i2c_A | 272 | Probable inorganic polyphosphate/ATP-NAD kinase 1; | 91.97 | |
| 2an1_A | 292 | Putative kinase; structural genomics, PSI, protein | 91.75 | |
| 3s40_A | 304 | Diacylglycerol kinase; structural genomics, the ce | 91.51 | |
| 1pea_A | 385 | Amidase operon; gene regulator, receptor, binding | 87.79 | |
| 1z0s_A | 278 | Probable inorganic polyphosphate/ATP-NAD kinase; A | 84.94 | |
| 3hsy_A | 376 | Glutamate receptor 2; ligand-gated ION channel, sy | 84.4 | |
| 4eyg_A | 368 | Twin-arginine translocation pathway signal; PSI-bi | 83.44 | |
| 3ks9_A | 496 | Mglur1, metabotropic glutamate receptor 1; glutama | 82.88 | |
| 3o21_A | 389 | Glutamate receptor 3; periplasmatic binding protei | 82.73 | |
| 3sm9_A | 479 | Mglur3, metabotropic glutamate receptor 3; structu | 82.7 | |
| 2q5c_A | 196 | NTRC family transcriptional regulator; structural | 82.07 | |
| 3snr_A | 362 | Extracellular ligand-binding receptor; structural | 82.04 | |
| 2pju_A | 225 | Propionate catabolism operon regulatory protein; s | 81.08 | |
| 4evq_A | 375 | Putative ABC transporter subunit, substrate-bindi | 81.03 | |
| 2pln_A | 137 | HP1043, response regulator; signaling protein; 1.8 | 80.35 |
| >3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-72 Score=610.02 Aligned_cols=383 Identities=27% Similarity=0.420 Sum_probs=349.0
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
|..|.|.+| ++|+||.|++++++++++++|.+|++||||+++.+.++.+++.+.|++.|+++.+|++++++|+.+.|++
T Consensus 1 M~~f~f~~p-~~i~~G~g~~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~ 79 (383)
T 3ox4_A 1 MASSTFYIP-FVNEMGEGSLEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLE 79 (383)
T ss_dssp -CCEEEECC-SEEEESTTHHHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHH
T ss_pred CCCceecCC-CeEEECCCHHHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHH
Confidence 567888886 8999999999999999999999999999999988887889999999999999999999999999999999
Q ss_pred HHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEe
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFD 178 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~ 178 (660)
+++.+++.++|+||||||||++|+||++|..+.++ .++|||... + +...+.+|+|+||||+|||||+|+++|++
T Consensus 80 ~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~-~~~~d~~~~----~-~~~~~~~p~i~IPTTagtgSe~t~~avi~ 153 (383)
T 3ox4_A 80 GLKILKDNNSDFVISLGGGSPHDCAKAIALVATNG-GEVKDYEGI----D-KSKKPALPLMSINTTAGTASEMTRFCIIT 153 (383)
T ss_dssp HHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSC-SSGGGGCEE----S-CCSSCCSCEEEEECSSSCCTTTCSEEEEE
T ss_pred HHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCC-CCHHHHhcc----c-ccccCCCCEEEEeCCCCchhhcCCeEEEE
Confidence 99999999999999999999999999999999875 789999532 1 23456699999999999999999999999
Q ss_pred eCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy2427 179 YEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258 (660)
Q Consensus 179 ~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (660)
+++++.|.++.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 154 ~~~~~~K~~i~~~~~~P~~~i~Dp~l~~tlP~~~~aag~~Dal~ha~Eay~s~-------------------~~------ 208 (383)
T 3ox4_A 154 DEVRHVKMAIVDRHVTPMVSVNDPLLMVGMPKGLTAATGMDALTHAFEAYSST-------------------AA------ 208 (383)
T ss_dssp ETTTTEEEEEECGGGSCSEEEECGGGTTTCCHHHHHHHHHHHHHHHHHHHHCT-------------------TC------
T ss_pred ECCCCeEEeecCCCccceEEEECcHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-------------------CC------
Confidence 98888999999999999999999999999999999999999999999999872 23
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
T Consensus 209 -------------------------------------------------------------------------------- 208 (383)
T 3ox4_A 209 -------------------------------------------------------------------------------- 208 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccc
Q psy2427 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDP 418 (660)
Q Consensus 339 ai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~ 418 (660)
T Consensus 209 -------------------------------------------------------------------------------- 208 (383)
T 3ox4_A 209 -------------------------------------------------------------------------------- 208 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy2427 419 LHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLE 498 (660)
Q Consensus 419 ~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ 498 (660)
+|++|.+|+++++++.++++++++|+.|.+
T Consensus 209 --------------------------------------------------~~~td~~a~~ai~~i~~~l~~a~~~~~d~~ 238 (383)
T 3ox4_A 209 --------------------------------------------------TPITDACALKAASMIAKNLKTACDNGKDMP 238 (383)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred --------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 345566666666677777777777888999
Q ss_pred HHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHH
Q psy2427 499 ARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 578 (660)
Q Consensus 499 ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~ 578 (660)
+|++|+||+++||++|+++|+|++|+|+|+||+.| +++||+++++++|+||+||.+.+++||+++++
T Consensus 239 ar~~m~~as~laG~a~~~~g~g~~Hai~h~l~~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~~~~~~la~ 305 (383)
T 3ox4_A 239 AREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGYY-------------NLPHGVCNAVLLPHVLAYNASVVAGRLKDVGV 305 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHS-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHhhhHHhcCc-------------CCChHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999974 79999999999999999999999999999999
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHh
Q psy2427 579 LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 579 ~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~ 657 (660)
.+|.+..+.++++.+..+++++++|++++|+|++|+|+|+++++++++++.++. +.+..+||+++|+||+++||+++|
T Consensus 306 ~~g~~~~~~~~~~~a~~~i~~~~~l~~~lglP~~L~~~gi~~~~i~~ia~~a~~-~~~~~~np~~~t~~di~~i~~~a~ 383 (383)
T 3ox4_A 306 AMGLDIANLGDKEGAEATIQAVRDLAASIGIPANLTELGAKKEDVPLLADHALK-DACALTNPRQGDQKEVEELFLSAF 383 (383)
T ss_dssp HTTCSCTTSCHHHHHHHHHHHHHHHHHHTTCCSSSTTTTCCGGGHHHHHHHHTT-SGGGGGCSSCCCHHHHHHHHHHTC
T ss_pred HhCCCcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHh-cccccCCCCCCCHHHHHHHHHHhC
Confidence 999887777788888999999999999999999999999999999999999986 455678999999999999999986
|
| >3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-67 Score=570.06 Aligned_cols=381 Identities=27% Similarity=0.448 Sum_probs=340.6
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcccccc--chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKL--APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~--~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
.|.|.+| ++|+||.|++++++++++++|.+|++||||+++.+. ++.+++.+.|++.|+++.+|++++++|+.+.|++
T Consensus 5 ~~~~~~p-~~i~~G~g~~~~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~ 83 (387)
T 3bfj_A 5 MFDYLVP-NVNFFGPNAISVVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRD 83 (387)
T ss_dssp CEEEECC-SEEEESTTGGGGHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHH
T ss_pred ceeeeCC-CeEEECCCHHHHHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHH
Confidence 4567765 899999999999999999998899999999998887 6889999999999999999999999999999999
Q ss_pred HHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEe
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFD 178 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~ 178 (660)
+++.+++.++|+||||||||++|+||++|..+.++ .++|||... .+...+.+|+|+||||+|||||+|++++++
T Consensus 84 ~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~-~~~~d~~~~-----~~~~~~~~p~i~IPTT~gtgSevt~~avi~ 157 (387)
T 3bfj_A 84 GLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHE-GDLYQYAGI-----ETLTNPLPPIVAVNTTAGTASEVTRHCVLT 157 (387)
T ss_dssp HHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSS-SCSGGGCBS-----SCCCSCCCCEEEEECSTTCCGGGCSEEEEE
T ss_pred HHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCC-CCHHHHhcc-----cccCCCCCCEEEEeCCCCccccccCcEEEE
Confidence 99999999999999999999999999999998875 688998731 223445699999999999999999999999
Q ss_pred eCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy2427 179 YEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258 (660)
Q Consensus 179 ~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (660)
+++++.|..+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..+
T Consensus 158 ~~~~~~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~haiE~~~s~-------------------~~~----- 213 (387)
T 3bfj_A 158 NTETKVKFVIVSWRNLPSVSINDPLLMIGKPAALTAATGMDALTHAVEAYISK-------------------DAN----- 213 (387)
T ss_dssp ETTTTEEEEEECGGGSCSEEEECGGGTTTCCHHHHHHHHHHHHHHHHHHHHST-------------------TCC-----
T ss_pred EcCCCceeeccCCccccCEEEEChHhhcCCCHHHHHHHHHHHHHHHHHHHhcC-------------------CCC-----
Confidence 98888899999888999999999999999999999999999999999999872 223
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
T Consensus 214 -------------------------------------------------------------------------------- 213 (387)
T 3bfj_A 214 -------------------------------------------------------------------------------- 213 (387)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccc
Q psy2427 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDP 418 (660)
Q Consensus 339 ai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~ 418 (660)
T Consensus 214 -------------------------------------------------------------------------------- 213 (387)
T 3bfj_A 214 -------------------------------------------------------------------------------- 213 (387)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy2427 419 LHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLE 498 (660)
Q Consensus 419 ~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ 498 (660)
|+++.+|+++++++.++++++++|+.|.+
T Consensus 214 ---------------------------------------------------~~~d~~a~~ai~~i~~~l~~~v~d~~d~~ 242 (387)
T 3bfj_A 214 ---------------------------------------------------PVTDAAAMQAIRLIARNLRQAVALGSNLQ 242 (387)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 34455566666777777777777888999
Q ss_pred HHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHH
Q psy2427 499 ARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 578 (660)
Q Consensus 499 ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~ 578 (660)
+|++|+||+++||++|.|+|++++|+|+|.|++.| +++||+++++++|+||+||.+.+++|+.++++
T Consensus 243 ar~~~~~as~laG~a~~~~g~~~~Hai~h~l~~~~-------------~i~HG~avai~lp~v~~~~~~~~~~~~~~la~ 309 (387)
T 3bfj_A 243 AREYMAYASLLAGMAFNNANLGYVHAMAHQLGGLY-------------DMPHGVANAVLLPHVARYNLIANPEKFADIAE 309 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHhhhHHhcCc-------------CCChHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999864 69999999999999999999999999999999
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHh
Q psy2427 579 LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 579 ~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~ 657 (660)
.+|....+.+.++.+..+++++++|++++|+|++|+|+|+++++++++++.++.+.+ ..+||+++|+||+++||+++|
T Consensus 310 ~lg~~~~~~~~~~~~~~~~~~i~~l~~~~glp~~l~~~gi~~~~~~~~a~~a~~~~~-~~~np~~~~~~~i~~i~~~~~ 387 (387)
T 3bfj_A 310 LMGENITGLSTLDAAEKAIAAITRLSMDIGIPQHLRDLGVKETDFPYMAEMALKDGN-AFSNPRKGNEQEIAAIFRQAF 387 (387)
T ss_dssp HTTCCCTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGGTCCGGGHHHHHHHHHHSGG-GTTCSSCCCHHHHHHHHHHHC
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhCcc-ccCCCCCCCHHHHHHHHHHhC
Confidence 999765555667777888999999999999999999999999999999999986544 456899999999999999986
|
| >3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-66 Score=554.90 Aligned_cols=350 Identities=23% Similarity=0.322 Sum_probs=315.8
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
|+.|.|...|++|+||.|++++++++++++|.+|++||||+.... ..+++.+.|++. .+.+|++++++|+.+.|++
T Consensus 5 M~~f~~~~~p~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~--~~~~v~~~L~~~--~~~~f~~v~~~p~~~~v~~ 80 (358)
T 3jzd_A 5 SQPFIYEAHAARVVFGAGSSSQVAAEVERLGAKRALVLCTPNQQA--EAERIADLLGPL--SAGVYAGAVMHVPIESARD 80 (358)
T ss_dssp CCCEEEEECCEEEEESTTGGGGHHHHHHHTTCSCEEEECCGGGHH--HHHHHHHHHGGG--EEEEECCCCTTCBHHHHHH
T ss_pred ccCceeecCCceEEECCCHHHHHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHHhccC--CEEEecCCcCCCCHHHHHH
Confidence 888999844699999999999999999999989999999998653 569999999876 5678999999999999999
Q ss_pred HHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEe
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFD 178 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~ 178 (660)
+++.+++.++|+||||||||++|+||++|.... +|+|+||||+ ||||+|++++++
T Consensus 81 ~~~~~~~~~~D~IIavGGGsviD~aK~iA~~~~------------------------~p~i~IPTT~-tgSevt~~~v~~ 135 (358)
T 3jzd_A 81 ATARAREAGADCAVAVGGGSTTGLGKAIALETG------------------------MPIVAIPTTY-AGSEVTPVYGLT 135 (358)
T ss_dssp HHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHC------------------------CCEEEEECSS-CCGGGCSEEEEE
T ss_pred HHHHhhccCCCEEEEeCCcHHHHHHHHHHhccC------------------------CCEEEEeCCc-cccccccceEEc
Confidence 999999999999999999999999999998543 8999999997 899999998887
Q ss_pred eCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy2427 179 YEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258 (660)
Q Consensus 179 ~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (660)
+ .+.|..+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 136 ~--~~~K~~~~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~Eay~s~-------------------~------- 187 (358)
T 3jzd_A 136 E--AGTKRTGRDPRVLPRTVIYDPALTVGLPRGLSVTSALNAIAHAAEGLYAR-------------------D------- 187 (358)
T ss_dssp E--TTEEEEEECGGGSCSEEEECGGGGTTSCHHHHHHHHHHHHHHHHHHTTCT-------------------T-------
T ss_pred C--CCeeEeeccCCcCCcEEEEChHHHcCCCHHHHHHHHHHHHHHHHHHHhcC-------------------C-------
Confidence 4 47799998899999999999999999999999999999999999999871 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
T Consensus 188 -------------------------------------------------------------------------------- 187 (358)
T 3jzd_A 188 -------------------------------------------------------------------------------- 187 (358)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccc
Q psy2427 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDP 418 (660)
Q Consensus 339 ai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~ 418 (660)
T Consensus 188 -------------------------------------------------------------------------------- 187 (358)
T 3jzd_A 188 -------------------------------------------------------------------------------- 187 (358)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy2427 419 LHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLE 498 (660)
Q Consensus 419 ~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ 498 (660)
.+|++|.+|+++++++.++++++++|+.|++
T Consensus 188 -------------------------------------------------~~~~td~~a~~ai~~i~~~l~~a~~~~~d~~ 218 (358)
T 3jzd_A 188 -------------------------------------------------ANPVMSLMAEEGIRALAAGIPAVFNDPADLD 218 (358)
T ss_dssp -------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 2455666666677777777777777888999
Q ss_pred HHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHH
Q psy2427 499 ARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 578 (660)
Q Consensus 499 ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~ 578 (660)
+|++|+|||++||++|+++|+|++|+|+|+||+.| ++|||+++++++|+||+||.+.+++||+++++
T Consensus 219 aR~~m~~as~laG~a~~~~g~g~~Hai~h~lg~~~-------------~i~HG~~~aillp~v~~~~~~~~~~~~~~~a~ 285 (358)
T 3jzd_A 219 ARSQCLYGAWLCGTVLGGVGMALHHKLCHTLGGSF-------------NLPHAETHTIVLPHALAYNAAAVPEAMARIRR 285 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHhhccc-------------CCchhHhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999975 79999999999999999999999999999999
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHhh
Q psy2427 579 LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMS 658 (660)
Q Consensus 579 ~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~~ 658 (660)
.+|.+.. ..++++++|++++|+|++|+|+|+++++++++++.|+.+ . .+||+++|+||+++||+++|.
T Consensus 286 ~lg~~~~---------~~~~~i~~l~~~lglP~~L~e~Gi~~~~i~~~a~~a~~~-~--~~np~~~~~~di~~i~~~a~~ 353 (358)
T 3jzd_A 286 ATGAGEQ---------SAAATLFDLAQRHGAPVALRDIGMREEDLDRAADIALAS-P--YWNPRPIEREPIRALLQAAYE 353 (358)
T ss_dssp HHTCTTS---------CHHHHHHHHHHHTTCCCCGGGGTCCGGGHHHHHHHHTTS-C--CCCSSCCCHHHHHHHHHHHHH
T ss_pred HhCCCch---------HHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhc-c--cCCCCCCCHHHHHHHHHHHhc
Confidence 9987543 136899999999999999999999999999999999854 2 479999999999999999997
Q ss_pred c
Q psy2427 659 V 659 (660)
Q Consensus 659 ~ 659 (660)
+
T Consensus 354 g 354 (358)
T 3jzd_A 354 G 354 (358)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-66 Score=554.70 Aligned_cols=348 Identities=21% Similarity=0.314 Sum_probs=314.4
Q ss_pred CCCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHH
Q psy2427 18 PDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFL 97 (660)
Q Consensus 18 ~~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~ 97 (660)
-|+.|.|...|++|+||.|++++++++++++|.+|++||||+... +..+++.+.|++. .+.+|++++++|+.+.|+
T Consensus 2 ~M~~F~~~~~p~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~--~~~v~~~v~~~p~~~~v~ 77 (353)
T 3hl0_A 2 HMQPFVYMAAPARIVFSAGSSADVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRL--AAGVFSEAAMHTPVEVTK 77 (353)
T ss_dssp -CCCCCCCCCCCCEEECTTGGGGHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGG--EEEEECCCCTTCBHHHHH
T ss_pred CccceeeecCCceEEECcCHHHHHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhC--CcEEecCcCCCCcHHHHH
Confidence 377888883458999999999999999999998999999999854 4569999999875 567899999999999999
Q ss_pred HHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEE
Q psy2427 98 EATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIF 177 (660)
Q Consensus 98 ~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi 177 (660)
++++.+++.++|+||||||||++|+||++|.... +|+|+||||+ ||||+|+++++
T Consensus 78 ~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~~~------------------------~p~i~IPTTa-tgSe~t~~~v~ 132 (353)
T 3hl0_A 78 TAVEAYRAAGADCVVSLGGGSTTGLGKAIALRTD------------------------AAQIVIPTTY-AGSEVTPILGQ 132 (353)
T ss_dssp HHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHC------------------------CEEEEEECSS-CCGGGCCEEEE
T ss_pred HHHHHHhccCCCEEEEeCCcHHHHHHHHHHhccC------------------------CCEEEEeCCc-hhhhccCceEE
Confidence 9999999999999999999999999999998543 8999999999 99999999998
Q ss_pred eeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q psy2427 178 DYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSD 257 (660)
Q Consensus 178 ~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~ 257 (660)
+ +.+.|.++.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..
T Consensus 133 ~--~~~~K~~~~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~Eay~s~-------------------~~----- 186 (353)
T 3hl0_A 133 T--ENGVKTTMRGPEILPEVVIYDAELTLGLPVAISMTSGLNAMAHAAEALYAR-------------------DR----- 186 (353)
T ss_dssp E--ETTEEEEEECTTTSCSEEEECGGGGTTSCHHHHHHHHHHHHHHHHHHTTCT-------------------TC-----
T ss_pred c--CCCeeEeeecCCcCccEEEEChHHHcCCCHHHHHHHHHHHHHHHHHHHhcC-------------------CC-----
Confidence 7 347899999999999999999999999999999999999999999999872 22
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhH
Q psy2427 258 VWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLS 337 (660)
Q Consensus 258 ~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~a 337 (660)
T Consensus 187 -------------------------------------------------------------------------------- 186 (353)
T 3hl0_A 187 -------------------------------------------------------------------------------- 186 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccc
Q psy2427 338 VVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLID 417 (660)
Q Consensus 338 vai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d 417 (660)
T Consensus 187 -------------------------------------------------------------------------------- 186 (353)
T 3hl0_A 187 -------------------------------------------------------------------------------- 186 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCH
Q psy2427 418 PLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDL 497 (660)
Q Consensus 418 ~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~ 497 (660)
+|++|.+|+++++++.++++++++|++|+
T Consensus 187 ---------------------------------------------------~~~td~~a~~ai~~i~~~l~~a~~~~~d~ 215 (353)
T 3hl0_A 187 ---------------------------------------------------NPIASMMAVEGLRAMIEALPVVRQAPHDI 215 (353)
T ss_dssp ---------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ---------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 34556666667777777777777788899
Q ss_pred HHHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHH
Q psy2427 498 EARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAA 577 (660)
Q Consensus 498 ~ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia 577 (660)
++|++|+||+++||++|+++|+|.+|+|+|+||+.| +++||+++++++|+||+||.+.+++||++++
T Consensus 216 ~aR~~m~~as~laG~a~~~~g~g~~H~i~h~l~~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~~~~~~~a 282 (353)
T 3hl0_A 216 GARETALYGAWLCGTVLGAVGMSLHHKLCHTLGGSL-------------DLPHAETHAVLLPHTIAYVEEAAPNLLAPLA 282 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHHTTCTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHhhHhhhcc-------------CCCHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999975 7999999999999999999999999999999
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHh
Q psy2427 578 ELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSM 657 (660)
Q Consensus 578 ~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~ 657 (660)
++||.+ +++++++|++++|+|++|+|+|+++++++++++.|+.+ . .+||+++|+||+++||+++|
T Consensus 283 ~~lg~~------------~~~~i~~l~~~lglP~~L~e~Gi~~~~i~~~a~~a~~~-~--~~np~~~~~~di~~i~~~a~ 347 (353)
T 3hl0_A 283 ALVGGR------------AGAGLFDFAARLGAPSSLAALGVGADDLDPMAELATAN-P--YWCPRPIEKTAIRDLLQRAF 347 (353)
T ss_dssp HHHTSC------------HHHHHHHHHHHHTCCCCTGGGTCCGGGHHHHHHHHTTS-C--CCCSSCCCHHHHHHHHHHHH
T ss_pred HHcCcH------------HHHHHHHHHHHcCCCccHHhcCCCHHHHHHHHHHHHhc-c--cCCCCCCCHHHHHHHHHHHh
Confidence 999864 36899999999999999999999999999999999854 2 47999999999999999999
Q ss_pred hc
Q psy2427 658 SV 659 (660)
Q Consensus 658 ~~ 659 (660)
.|
T Consensus 348 ~g 349 (353)
T 3hl0_A 348 EG 349 (353)
T ss_dssp HT
T ss_pred cC
Confidence 76
|
| >1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-66 Score=560.59 Aligned_cols=379 Identities=26% Similarity=0.395 Sum_probs=337.5
Q ss_pred eEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHH
Q psy2427 23 AFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKF 102 (660)
Q Consensus 23 ~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~ 102 (660)
.|.+| ++|+||.|++++++++++++|.+|++||||+++.+.++.+++.+.|++.|+++.+|++++++|+.+.|+++++.
T Consensus 5 ~f~~p-~~i~~G~g~~~~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~ 83 (386)
T 1rrm_A 5 RMILN-ETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGV 83 (386)
T ss_dssp EEECC-SEEEESTTGGGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHH
T ss_pred cccCC-ceEEECcCHHHHHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHH
Confidence 56664 89999999999999999999889999999999888778899999999999999999999999999999999999
Q ss_pred hHhcCCCEEEEecCchhhhHHHHHHhHhcCCCc--chhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 103 VRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEA--EFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 103 ~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~--~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
++++++|+||||||||++|+||++|..+.++ . ++|||... .+...+.+|+|+||||+|||||+|++++++++
T Consensus 84 ~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~-~~~~~~d~~~~-----~~~~~~~~p~i~IPTT~gtgSevt~~avi~~~ 157 (386)
T 1rrm_A 84 FQNSGADYLIAIGGGSPQDTCKAIGIISNNP-EFADVRSLEGL-----SPTNKPSVPILAIPTTAGTAAEVTINYVITDE 157 (386)
T ss_dssp HHHHTCSEEEEEESHHHHHHHHHHHHHHHCG-GGTTSGGGSEE-----CCCCSCCSCEEEEECSSSCCTTTCSEEEEEET
T ss_pred HHhcCcCEEEEeCChHHHHHHHHHHHHHhCC-CCCCHHHHhcc-----cccCCCCCCEEEEeCCCCchhhhCCcEEEEeC
Confidence 9999999999999999999999999998775 4 78898742 23345569999999999999999999999998
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
+++.|..+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..++++
T Consensus 158 ~~~~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~E~~~s~-------------------~~~~~~---- 214 (386)
T 1rrm_A 158 EKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYITR-------------------GAWALT---- 214 (386)
T ss_dssp TTTEEEEEECGGGCCSEEEECGGGTTTSCHHHHHHHHHHHHHHHHHHHHST-------------------TCCHHH----
T ss_pred CCCeeEeecCCccccCEEEEChhhhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CCCHHH----
Confidence 888899999888999999999999999999999999999999999999872 334444
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
T Consensus 215 -------------------------------------------------------------------------------- 214 (386)
T 1rrm_A 215 -------------------------------------------------------------------------------- 214 (386)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 215 -------------------------------------------------------------------------------- 214 (386)
T 1rrm_A 215 -------------------------------------------------------------------------------- 214 (386)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
+.+|+++++++.++++++++ .|.++|
T Consensus 215 ----------------------------------------------------d~~a~~a~~~i~~~l~~~~~--~d~~ar 240 (386)
T 1rrm_A 215 ----------------------------------------------------DALHIKAIEIIAGALRGSVA--GDKDAG 240 (386)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHHHHHH--cCHHHH
Confidence 44455555555555665555 578899
Q ss_pred HHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHh
Q psy2427 501 SHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~l 580 (660)
++|+||+++||++|.|+|+|++|+|+|.|++.| +++||+++++++|++++||.+.+++||+++++.+
T Consensus 241 ~~~~~as~laG~a~~~~g~g~~H~i~h~l~~~~-------------~i~HG~avai~lp~~~~~~~~~~~~~~~~la~~~ 307 (386)
T 1rrm_A 241 EEMALGQYVAGMGFSNVGLGLVHGMAHPLGAFY-------------NTPHGVANAILLPHVMRYNADFTGEKYRDIARVM 307 (386)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHhccHHhcCc-------------CCChHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 999999999999999999999999999999874 6999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHhhc
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMSV 659 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~~~ 659 (660)
|....+.+.++.+..+++++++|++++|+|++|+|+|+++++++++++.++.+ ....+||+++|+||+++||+++|.|
T Consensus 308 g~~~~~~~~~~~~~~~~~~i~~l~~~lglp~~l~~~gi~~~~~~~~a~~a~~~-~~~~~np~~~~~~~i~~i~~~~~~g 385 (386)
T 1rrm_A 308 GVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDD-VCTGGNPREATLEDIVELYHTAWEG 385 (386)
T ss_dssp TCCCTTCCHHHHHHHHHHHHHHHHHHTTCCSSGGGGTCCGGGHHHHHHHHHTC-GGGGGCSSCCCHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHhcCCCHHHHHHHHHHHHhc-ccccCCCCCCCHHHHHHHHHHHhcC
Confidence 97655556667778889999999999999999999999999999999999865 4445789999999999999999965
|
| >1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-65 Score=559.66 Aligned_cols=383 Identities=22% Similarity=0.335 Sum_probs=339.1
Q ss_pred CCCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEEC-ccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHH
Q psy2427 18 PDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTD-PHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSF 96 (660)
Q Consensus 18 ~~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd-~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v 96 (660)
-|..|.|.+| ++|+||.|++++++++++++|.+|++|||| +.+.+.++.+++.+.|++.|+++.+|++++++|+.+.|
T Consensus 12 ~~~~f~~~~p-~~i~~G~g~l~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v 90 (407)
T 1vlj_A 12 HMENFVFHNP-TKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKV 90 (407)
T ss_dssp CCCCEEECCC-CEEEESTTCGGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHH
T ss_pred ccCCceEecC-CeEEECcCHHHHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHH
Confidence 4677888876 899999999999999999998899999999 55666677899999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceE
Q psy2427 97 LEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSI 176 (660)
Q Consensus 97 ~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~av 176 (660)
+++++.+++.++|+||||||||++|+||++|..+.++ .++|||... .....+.+|+|+||||+|||||+|+++|
T Consensus 91 ~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~-~~~~d~~~~-----~~~~~~~~p~i~IPTTagtgSevt~~av 164 (407)
T 1vlj_A 91 HEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYE-GDIWDAFIG-----KYQIEKALPIFDVLTISATGTEMNGNAV 164 (407)
T ss_dssp HHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCS-SCGGGGGGT-----SCCCCCCCCEEEEECSCSSCGGGSSEEE
T ss_pred HHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCC-CCHHHHhcc-----cccCCCCCCEEEEeCCCCcchhhcCeEE
Confidence 9999999999999999999999999999999998775 588998741 1223456999999999999999999999
Q ss_pred EeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy2427 177 FDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVS 256 (660)
Q Consensus 177 i~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (660)
+++++++.|..+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..+
T Consensus 165 i~~~~~~~K~~i~~~~~~P~~ai~Dp~l~~tlP~~~~aag~~Dal~haiE~~~s~-------------------~~~--- 222 (407)
T 1vlj_A 165 ITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFDG-------------------SSP--- 222 (407)
T ss_dssp EEETTTTEEEEEECGGGSCSEEEECGGGGGGSCHHHHHHHHHHHHHHHHHHHTSS-------------------CCC---
T ss_pred EEECCCCeEEEecCCCccceEEEEChHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------------------CCC---
Confidence 9998888899998888999999999999999999999999999999999999872 223
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
T Consensus 223 -------------------------------------------------------------------------------- 222 (407)
T 1vlj_A 223 -------------------------------------------------------------------------------- 222 (407)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 416 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~ 416 (660)
T Consensus 223 -------------------------------------------------------------------------------- 222 (407)
T 1vlj_A 223 -------------------------------------------------------------------------------- 222 (407)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2427 417 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDD 496 (660)
Q Consensus 417 d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~ 496 (660)
|+++.+|+++++++.++++++++|+.|
T Consensus 223 -----------------------------------------------------~~~d~~a~~ai~~i~~~l~~a~~d~~d 249 (407)
T 1vlj_A 223 -----------------------------------------------------EISNEIAEGTIRTIMKMTERLIEKPDD 249 (407)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345556666677777777777777888
Q ss_pred HHHHHHHHHHHHHHhHhhhcccc-h---hhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHH
Q psy2427 497 LEARSHMHLASAMAGVGFGNAGV-H---LCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPER 572 (660)
Q Consensus 497 ~~ar~~~~~as~~ag~~~~~~g~-~---~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~ 572 (660)
.++|++|+||+++||++|.|+|+ + ++|+|+|.|++.| +++||+++++++|+||+||.+.+++|
T Consensus 250 ~~aR~~m~~as~lag~a~~~~g~~~~~~~~Hai~h~l~~~~-------------~i~HG~a~ai~lp~v~~~~~~~~~~~ 316 (407)
T 1vlj_A 250 YEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALY-------------DIAHGAGLAIVFPAWMKYVYRKNPAQ 316 (407)
T ss_dssp HHHHHHHHHHHHHHTSSTTTTTSCSCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHhhHHHhCc-------------CCChHHHHHHHHHHHHHHhhhhcHHH
Confidence 99999999999999999999888 7 9999999999874 79999999999999999999999999
Q ss_pred HHHHHH-HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCC-------CCCCCCCccC
Q psy2427 573 HIEAAE-LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQH-------RITKLAPREQ 644 (660)
Q Consensus 573 ~~~ia~-~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~-------~~~~~~P~~~ 644 (660)
++++++ ++|... ++++.+..+++++++|++++|+|++|+|+|+++++++++++.|+.+. ....+||+++
T Consensus 317 ~~~la~~~~g~~~---~~~~~~~~~~~~i~~l~~~lglP~~l~elgi~~~~i~~~a~~a~~~~~~~~rp~~~~~~np~~~ 393 (407)
T 1vlj_A 317 FERFAKKIFGFEG---EGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVL 393 (407)
T ss_dssp HHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHTTCCCSTGGGTCCGGGHHHHHHHHHHHHHHTTGGGTCCSCSSSCC
T ss_pred HHHHHHHHcCCCC---ChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhhhhhcccccccccCCCCCC
Confidence 999997 688742 45667788899999999999999999999999999999999998540 2334699999
Q ss_pred CHHHHHHHHHHHhh
Q psy2427 645 SEEDLANLFENSMS 658 (660)
Q Consensus 645 t~e~i~~il~~a~~ 658 (660)
|+||+++||+++|+
T Consensus 394 t~e~i~~i~~~~~~ 407 (407)
T 1vlj_A 394 EREDVREILKLAAK 407 (407)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999874
|
| >3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-66 Score=550.32 Aligned_cols=346 Identities=23% Similarity=0.330 Sum_probs=310.2
Q ss_pred CceeEEeccceEEECcChH-HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 20 KEYAFEMASSTIRIGPGVT-REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 20 ~~~~~~~~~~~i~~G~g~~-~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
+.|.|...|++|+||.|++ ++++++++++|.+|++||||++... ..+++.+.|+ .+.+|++++++|+.+.|++
T Consensus 6 m~F~~~~~P~~i~~G~g~~~~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~----~~~~f~~v~~~p~~~~v~~ 79 (364)
T 3iv7_A 6 LAFNHDTLPQKVMFGYGKSSAFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE----VAIWHDEVVMHVPIEVAER 79 (364)
T ss_dssp CEEEEEECCEEEEEETTCHHHHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC----CSEEECCCCTTCBHHHHHH
T ss_pred ceeEEecCCceEEEeCChHHHHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC----CCEEEcceecCCCHHHHHH
Confidence 3478875679999999987 6799999999989999999998653 4577877775 3568999999999999999
Q ss_pred HHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEe
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFD 178 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~ 178 (660)
+++.++++++|+||||||||++|+||++|.... +|+|+||||+ ||||+|++++++
T Consensus 80 ~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~~~------------------------~P~i~IPTTa-tgSe~t~~avi~ 134 (364)
T 3iv7_A 80 ARAVATDNEIDLLVCVGGGSTIGLAKAIAMTTA------------------------LPIVAIPTTY-AGSEATNVWGLT 134 (364)
T ss_dssp HHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHC------------------------CCEEEEECSS-SCGGGCCEEEEE
T ss_pred HHHHHHhcCCCEEEEeCCcHHHHHHHHHHhccC------------------------CCEEEEcCCc-ccccccCeeEec
Confidence 999999999999999999999999999998643 8999999999 999999999997
Q ss_pred eCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy2427 179 YEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258 (660)
Q Consensus 179 ~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (660)
+ .+.|..+.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 135 ~--~~~K~~~~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~Eay~s~-------------------~------- 186 (364)
T 3iv7_A 135 E--AARKTTGVDLKVLPETVIYDSELTMSLPVEMSVASGLNGLAHCIDSLWGP-------------------N------- 186 (364)
T ss_dssp E--TTEEEEEECGGGSCSEEEECGGGGTTSCHHHHHHHHHHHHHHHHHHTTCT-------------------T-------
T ss_pred C--CCeeEeccCCCcCceEEEEChHHHcCCCHHHHHHhHHHHHHHHHHHHhcC-------------------C-------
Confidence 5 36799999999999999999999999999999999999999999999872 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
T Consensus 187 -------------------------------------------------------------------------------- 186 (364)
T 3iv7_A 187 -------------------------------------------------------------------------------- 186 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccc
Q psy2427 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDP 418 (660)
Q Consensus 339 ai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~ 418 (660)
T Consensus 187 -------------------------------------------------------------------------------- 186 (364)
T 3iv7_A 187 -------------------------------------------------------------------------------- 186 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy2427 419 LHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLE 498 (660)
Q Consensus 419 ~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ 498 (660)
.+|++|.+|+++++++.++++++++|+.|++
T Consensus 187 -------------------------------------------------~~~~td~~a~~ai~~i~~~l~~a~~~~~d~~ 217 (364)
T 3iv7_A 187 -------------------------------------------------ADPINAVLAAEGIRALNQGLPKIVANPHSIE 217 (364)
T ss_dssp -------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 2355666677777777777777777888999
Q ss_pred HHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHH
Q psy2427 499 ARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE 578 (660)
Q Consensus 499 ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~ 578 (660)
+|++|+||+++||++|+++|+|++|+|+|+||+.| +++||+++++++|+||+||.+.+++||+++++
T Consensus 218 aR~~m~~As~laG~a~~~~g~g~~Hai~h~lg~~~-------------~i~HG~~~aillp~v~~~~~~~~~~~~~~~a~ 284 (364)
T 3iv7_A 218 GRDEALYGAYLAAVSFASAGSGLHHKICHTLGGTF-------------NLPHAQTHATVLPYVLAFNAGDAPEAERRAAA 284 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTS-------------CCCHHHHHHHHHHHHHHHHGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHhhccCchHHHHHHhHhhhcc-------------CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999974 79999999999999999999999999999999
Q ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHhh
Q psy2427 579 LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMS 658 (660)
Q Consensus 579 ~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~~ 658 (660)
+||.+. .++.+++|++++|+|++|+|+|+++++++++++.++ . .+..+||+++|+||+++||+++|.
T Consensus 285 ~lg~~~-----------~~~~i~~l~~~lglP~~L~e~Gi~~~~i~~~a~~a~-~-~~~~~np~~~t~~di~~il~~a~~ 351 (364)
T 3iv7_A 285 AFGTDT-----------ALEGLQRLRLSVNAPKRLSDYGFEASGIAEAVDVTL-E-KVPANNPRPVTRENLSRLLEAALN 351 (364)
T ss_dssp HHTSSS-----------HHHHHHHHHHHTTCCCCGGGGTCCGGGHHHHHHHHH-T-TSCTTCSSCCCHHHHHHHHHHHHH
T ss_pred HhCCch-----------HHHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHHH-h-hcccCCCCCCCHHHHHHHHHHHhc
Confidence 998741 268899999999999999999999999999999998 3 456789999999999999999997
Q ss_pred c
Q psy2427 659 V 659 (660)
Q Consensus 659 ~ 659 (660)
+
T Consensus 352 g 352 (364)
T 3iv7_A 352 G 352 (364)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-64 Score=546.57 Aligned_cols=381 Identities=20% Similarity=0.285 Sum_probs=335.0
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcc-ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFL 97 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~-~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~ 97 (660)
|+.+.|..| ++|+||.|++++++++++ +| +|++||||+. +...++.+++.+.|+ |+++.+|++++++|+.+.|+
T Consensus 22 m~~~~~~~p-~~i~~G~g~l~~l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~ 96 (408)
T 1oj7_A 22 LNNFNLHTP-TRILFGKGAIAGLREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLM 96 (408)
T ss_dssp CCCEEEEEE-EEEEESTTGGGGHHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHH
T ss_pred hhceeecCC-CeEEECCCHHHHHHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHH
Confidence 556778775 899999999999999998 88 9999999987 555567899999997 88999999999999999999
Q ss_pred HHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCC-cchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceE
Q psy2427 98 EATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPE-AEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSI 176 (660)
Q Consensus 98 ~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~-~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~av 176 (660)
++++.++++++|+||||||||++|+||++|..+.+++ .++|||+... .....+.+|+|+||||+|||||+|+++|
T Consensus 97 ~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~----~~~~~~~~p~i~IPTTagtgSevt~~av 172 (408)
T 1oj7_A 97 NAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTG----GKEIKSAIPMGCVLTLPATGSESNAGAV 172 (408)
T ss_dssp HHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTT----TTTCCCCCCEEEEESSCSSCGGGSSEEE
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccc----cCcCCCCCCEEEEeCCCchhHHhCCCEE
Confidence 9999999999999999999999999999999987642 1788887521 1223356999999999999999999999
Q ss_pred EeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy2427 177 FDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVS 256 (660)
Q Consensus 177 i~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (660)
+++++++.|.++.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++. .
T Consensus 173 i~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~tlP~~~~aag~~Dal~haiEa~~s~------------------~------ 228 (408)
T 1oj7_A 173 ISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTK------------------P------ 228 (408)
T ss_dssp EEETTTTEEEEEECGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHHSSS------------------C------
T ss_pred EEECCCCeEEEeeCCCcCccEEEECchhhcCCCHHHHHhHHHHHHHHHHHHHhcC------------------C------
Confidence 9998888999999888999999999999999999999999999999999999862 0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
T Consensus 229 -------------------------------------------------------------------------------- 228 (408)
T 1oj7_A 229 -------------------------------------------------------------------------------- 228 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 416 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~ 416 (660)
T Consensus 229 -------------------------------------------------------------------------------- 228 (408)
T 1oj7_A 229 -------------------------------------------------------------------------------- 228 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2427 417 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDD 496 (660)
Q Consensus 417 d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~ 496 (660)
..+|+++.+|+++++++.++++++++|+.|
T Consensus 229 --------------------------------------------------~~~~~~d~~a~~ai~~i~~~l~~av~d~~d 258 (408)
T 1oj7_A 229 --------------------------------------------------VDAKIHDRFAEGILLTLIEDGPKALKEPEN 258 (408)
T ss_dssp --------------------------------------------------BCCHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred --------------------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 123455666667777777777777788889
Q ss_pred HHHHHHHHHHHHHHhHhhhcccc---hhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHH
Q psy2427 497 LEARSHMHLASAMAGVGFGNAGV---HLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERH 573 (660)
Q Consensus 497 ~~ar~~~~~as~~ag~~~~~~g~---~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~ 573 (660)
.++|++|++|+++||+++.|.|. +++|+|+|.|++.| +++||+++++++|+|++||.+.+++|+
T Consensus 259 ~~ar~~~~~as~lag~a~~~~G~~~~~~~Hai~h~l~~~~-------------~i~HG~avai~lp~v~~~~~~~~~~~~ 325 (408)
T 1oj7_A 259 YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMH-------------GLDHAQTLAIVLPALWNEKRDTKRAKL 325 (408)
T ss_dssp HHHHHHHHHHHHHHSSSTTTTTSCCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhHHHhcc-------------CCChHHhHHHHHHHHHHHHhhhCHHHH
Confidence 99999999999999999999887 79999999999864 699999999999999999999999999
Q ss_pred HHHHH-HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHH
Q psy2427 574 IEAAE-LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANL 652 (660)
Q Consensus 574 ~~ia~-~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~i 652 (660)
+++++ ++|.... ++++.+...++++++|++++|+|++|+|+|+++++++++++.++.+.+...+||+++|+||+++|
T Consensus 326 ~~la~~~~g~~~~--~~~~~~~~~~~~i~~l~~~lglP~~l~~lgi~~~~i~~~a~~a~~~~~~~~~~p~~~t~~~i~~i 403 (408)
T 1oj7_A 326 LQYAERVWNITEG--SDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRI 403 (408)
T ss_dssp HHHHHHHHCCCCS--CHHHHHHHHHHHHHHHHHHHTCCCSGGGGTCCSTTHHHHHHHHHHTTCSSBTTTTCBCHHHHHHH
T ss_pred HHHHHHhcCCCCC--ChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhccccccCCCCCCCHHHHHHH
Confidence 99998 4787542 45667778899999999999999999999999999999999998765544679999999999999
Q ss_pred HHHHh
Q psy2427 653 FENSM 657 (660)
Q Consensus 653 l~~a~ 657 (660)
|+++|
T Consensus 404 l~~~~ 408 (408)
T 1oj7_A 404 YEAAR 408 (408)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99875
|
| >1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-60 Score=511.00 Aligned_cols=356 Identities=25% Similarity=0.416 Sum_probs=311.7
Q ss_pred eeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 22 ~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
+.|.. |++|+||.|++++++++++++| +|++||||++. ...++.+++.+.|++.|+++.+|++++++|+.+.|++++
T Consensus 14 ~~~~~-p~~i~~G~g~~~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~ 91 (371)
T 1o2d_A 14 WEFYM-PTDVFFGEKILEKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAV 91 (371)
T ss_dssp CCCCC-CCEEEESTTHHHHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHH
T ss_pred EEecC-CceEEECcCHHHHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHH
Confidence 34444 5899999999999999999998 99999999954 445678999999999999999999999999999999999
Q ss_pred HHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 101 KFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 101 ~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
+.+++.++|+||||||||++|+||++|..+.+++.++|||... .+. .+.+|+|+||||+|||||+|++++++ +
T Consensus 92 ~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~-----~~~-~~~~p~i~IPTTagtgse~t~~avi~-~ 164 (371)
T 1o2d_A 92 ERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDR-----EKV-KHWLPVVEIPTTAGTGSEVTPYSILT-D 164 (371)
T ss_dssp HHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCG-----GGC-CCCCCEEEEECSSCCCGGGCCEEEEE-C
T ss_pred HHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcc-----cCC-CCCCeEEEEeCCCchhhhhcCceEEE-c
Confidence 9999999999999999999999999999998877889998742 112 25699999999999999999999999 5
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
+.+.|.++. ..+|+++|+||+++.++|++++++|++|+|+|++|+|++. ..+++++.++
T Consensus 165 ~~g~K~~i~--~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~E~~~s~-------------------~~~~~~d~~a 223 (371)
T 1o2d_A 165 PEGNKRGCT--LMFPVYAFLDPRYTYSMSDELTLSTGVDALSHAVEGYLSR-------------------KSTPPSDALA 223 (371)
T ss_dssp TTSCEEEEE--CCCCSEEEECGGGGGGCCHHHHHHHHHHHHHHHHHHHHST-------------------TCCHHHHHHH
T ss_pred CCCeeEeee--cccCCEEEECchhhcCCCHHHHHHHHHHHHHHHHHHHhcC-------------------CCCHHHHHHH
Confidence 778899998 7889999999999999999999999999999999999872 3455555555
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
+++++++.+++
T Consensus 224 ~~a~~li~~~l--------------------------------------------------------------------- 234 (371)
T 1o2d_A 224 IEAMKIIHRNL--------------------------------------------------------------------- 234 (371)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 55555554444
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 235 -------------------------------------------------------------------------------- 234 (371)
T 1o2d_A 235 -------------------------------------------------------------------------------- 234 (371)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
+.+++ .|.++|
T Consensus 235 -------------------------------------------------------------------~~~v~--~d~~aR 245 (371)
T 1o2d_A 235 -------------------------------------------------------------------PKAIE--GNREAR 245 (371)
T ss_dssp -------------------------------------------------------------------HHHHT--TCHHHH
T ss_pred -------------------------------------------------------------------HHHHH--cCHHHH
Confidence 44433 467789
Q ss_pred HHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHh
Q psy2427 501 SHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~l 580 (660)
++|++|+++||++|.|.|.+++|+|+|.|++++ +++||+++|+++|++++|+.+..++++++++++|
T Consensus 246 ~~~~~as~laG~a~~n~G~~~~Hai~h~l~~~~-------------~i~HG~a~ai~l~~~~~~~~~~~~~~~~~~a~~l 312 (371)
T 1o2d_A 246 KKMFVASCLAGMVIAQTGTTLAHALGYPLTTEK-------------GIKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIF 312 (371)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhCC-------------CCChHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH
Confidence 999999999999999999999999999999864 6999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHhh
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMS 658 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~~ 658 (660)
| +++.++++++|+|++ +|+++++++++++.++.+ ....+||+++|+||+++||+++|+
T Consensus 313 ~----------------~~l~~~l~~lglp~~---~gi~~~~~~~la~~a~~d-~~~~~~p~~~~~~~i~~il~~~~~ 370 (371)
T 1o2d_A 313 G----------------GSLLKFLKELGLYEK---VAVSSEELEKWVEKGSRA-KHLKNTPGTFTPEKIRNIYREALG 370 (371)
T ss_dssp T----------------TCHHHHHHHTTCCCC---CCCCHHHHHHHHHHHTTC-GGGGGSSSCCCHHHHHHHHHHHHC
T ss_pred H----------------HHHHHHHHHcCCCcC---CCCCHHHHHHHHHHHHhc-ccccCCCCCCCHHHHHHHHHHHhh
Confidence 7 247788899999965 799999999999999855 345789999999999999999986
|
| >3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-59 Score=501.64 Aligned_cols=342 Identities=20% Similarity=0.273 Sum_probs=290.2
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcC---CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMK---AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDS 95 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g---~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~ 95 (660)
|....|..| ++|+||.|++++++++++++| .+|++||||+++.+. .+.+.|++.|+++.+|++++++|+.+.
T Consensus 20 ~~~~~f~~p-~~i~~G~g~l~~l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~pt~~~ 94 (375)
T 3rf7_A 20 MSFKNFKCV-PKMIFGRGSFVQLDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDEPTTVQ 94 (375)
T ss_dssp TTSCCCCCC-SCEEESTTGGGGHHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSCCBHHH
T ss_pred cchhhhcCC-CeEEEcCCHHHHHHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCCCCHHH
Confidence 344556665 899999999999999999976 378999999987655 366778778999999999999999999
Q ss_pred HHHHHHHhHhcC---CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCcccc
Q psy2427 96 FLEATKFVRSVQ---CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETT 172 (660)
Q Consensus 96 v~~~~~~~~~~~---~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s 172 (660)
|+++++.+++.+ +|+||||||||++|+||++|..+.++ ++++||... .....+.+|+|+||||+|||||+|
T Consensus 95 v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~-~~~~~~~~~-----~~~~~~~~P~i~IPTTagtgSevt 168 (375)
T 3rf7_A 95 VDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNP-GSSSEYQGW-----DLIKNPAVHHIGIPTVSGTGAEAS 168 (375)
T ss_dssp HHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSC-SCGGGGCEE-----SCCCSCCCCEEEEESSCSSCTTTC
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCC-CCHHHhhcc-----ccccCCCCCEEEEcCCCccchhhC
Confidence 999999999998 99999999999999999999999775 578888642 223455699999999999999999
Q ss_pred CceEEeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCC
Q psy2427 173 GVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQ 252 (660)
Q Consensus 173 ~~avi~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~ 252 (660)
+++|++++++ |.++.++..+|+++|+||+++.++|++++++|++|+|+|++|+|++ ...
T Consensus 169 ~~avit~~~~--K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aa~g~Dal~HaiEay~s-------------------~~~ 227 (375)
T 3rf7_A 169 RTAVLCGPVR--KLGLNSDYTVFDQIIMDSELIAGVPTDQWFYTGMDCFIHCVESLQG-------------------TYL 227 (375)
T ss_dssp SCCEEECSSC--EEEEESGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHHHS-------------------TTC
T ss_pred CeEEEEeCCC--eEEecccccCCCEEEEcHHHHcCCCHHHHHHHHHHHHHHHHHHHhc-------------------cCC
Confidence 9999998653 8999999999999999999999999999999999999999999988 356
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCc
Q psy2427 253 NPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPII 332 (660)
Q Consensus 253 ~~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~ 332 (660)
+|++|.+++++++++.+++
T Consensus 228 ~~~sd~~a~~ai~li~~~l------------------------------------------------------------- 246 (375)
T 3rf7_A 228 NEFAKAFAEKSMDLCREVY------------------------------------------------------------- 246 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence 7777777777776654432
Q ss_pred CchhHHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcc
Q psy2427 333 PHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPT 412 (660)
Q Consensus 333 ~HG~avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~ 412 (660)
T Consensus 247 -------------------------------------------------------------------------------- 246 (375)
T 3rf7_A 247 -------------------------------------------------------------------------------- 246 (375)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhc
Q psy2427 413 LGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVY 492 (660)
Q Consensus 413 ~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~ 492 (660)
+ +
T Consensus 247 ---------------------------------------------------------------------------~---~ 248 (375)
T 3rf7_A 247 ---------------------------------------------------------------------------L---D 248 (375)
T ss_dssp ---------------------------------------------------------------------------T---S
T ss_pred ---------------------------------------------------------------------------h---h
Confidence 1 1
Q ss_pred CCCCHHHHHHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHH
Q psy2427 493 NQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPER 572 (660)
Q Consensus 493 ~~~~~~ar~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~ 572 (660)
+ |.++|++|+||+++||++|+++|+|++|+|+|+||++| +++||+++++++|++++|+.+ .++
T Consensus 249 ~--~~~ar~~m~~as~laG~a~~~~g~g~~Hai~h~L~~~~-------------~i~HG~~~aillp~v~~~~~~-~~~- 311 (375)
T 3rf7_A 249 D--HPEKDDKLMMASYMGGMSIAYSQVGACHAVSYGLGYVL-------------GYHHGIGNCLAFDVLEEFYPE-GVA- 311 (375)
T ss_dssp C--CTTHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHTTCTTTSHH-HHH-
T ss_pred c--CHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHhcc-------------CCCchhhHHHHHHHHHHhCHH-HHH-
Confidence 1 45689999999999999999999999999999999975 799999999999999988532 122
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH--HcCCCCcccccCCCCCcHHHHHHhhccCCC-----CCCCCCccCC
Q psy2427 573 HIEAAELLGADVSRVKKADAGKLLADTVRGYMD--QMKIENGLKVLGYTSADIPALVTGTLPQHR-----ITKLAPREQS 645 (660)
Q Consensus 573 ~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~--~lglp~~L~elGi~~~~i~~ia~~a~~~~~-----~~~~~P~~~t 645 (660)
++.+|.+ ++|+|++|++ |+++++++++|+.|+.+.+ ...||||++|
T Consensus 312 --------------------------~~~~~~~~~~lglP~~L~~-gi~~e~l~~~a~~A~~~~~l~~~~~~~n~Pr~~t 364 (375)
T 3rf7_A 312 --------------------------EFRKMMEIHNITLPKNICK-DLPDETIAKMVAVTKSMGPLWDNVYGKGWEEKVT 364 (375)
T ss_dssp --------------------------HHHHHHHHTTCCCCCCSST-TCCHHHHHHHHHHHHTCHHHHHHHHCTTCTTTSC
T ss_pred --------------------------HHHHHHHhcCCCCCCchhh-CCCHHHHHHHHHHHHhhhhccccCCCCCCCCCCC
Confidence 3333333 7999999998 9999999999999986533 2345699999
Q ss_pred HHHHHHHHHH
Q psy2427 646 EEDLANLFEN 655 (660)
Q Consensus 646 ~e~i~~il~~ 655 (660)
+||+++||++
T Consensus 365 ~edi~~i~~~ 374 (375)
T 3rf7_A 365 DEMLTKLFRR 374 (375)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999986
|
| >3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-59 Score=499.90 Aligned_cols=353 Identities=15% Similarity=0.127 Sum_probs=293.8
Q ss_pred CCCCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHH
Q psy2427 17 TPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSF 96 (660)
Q Consensus 17 ~~~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v 96 (660)
..|..+.|..| ++|+||.|++++++++++++| +|++||||+.+.+. +.+++.+.|++ |+++ +|..++++|+.+.|
T Consensus 21 ~~mm~~~f~~p-~~i~~G~g~l~~l~~~l~~~g-~r~liVtd~~~~~~-~~~~v~~~L~~-g~~~-~~~~~~~~p~~~~v 95 (387)
T 3uhj_A 21 QSMMARAFGGP-NKYIQRAGEIDKLAAYLAPLG-KRALVLIDRVLFDA-LSERIGKSCGD-SLDI-RFERFGGECCTSEI 95 (387)
T ss_dssp ---CEEEEECC-SEEEECTTTTTTTHHHHGGGC-SEEEEEECTTTHHH-HHHHC-------CCEE-EEEECCSSCSHHHH
T ss_pred hhhhhhHhcCC-CeEEEcCCHHHHHHHHHHHcC-CEEEEEECchHHHH-HHHHHHHHHHc-CCCe-EEEEcCCCCCHHHH
Confidence 34566778875 899999999999999999999 99999999998876 77999999999 9998 88999999999999
Q ss_pred HHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceE
Q psy2427 97 LEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSI 176 (660)
Q Consensus 97 ~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~av 176 (660)
+++++.+++.++|+||||||||++|+||++|.... +|+|+||||+|||||+|++++
T Consensus 96 ~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~~~------------------------~p~i~IPTTagtgSevt~~av 151 (387)
T 3uhj_A 96 ERVRKVAIEHGSDILVGVGGGKTADTAKIVAIDTG------------------------ARIVIAPTIASTDAPCSAIAV 151 (387)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHTT------------------------CEEEECCSSCCCSTTTSSEEE
T ss_pred HHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHhcC------------------------CCEEEecCcccCCcccCCeEE
Confidence 99999999999999999999999999999996543 899999999999999999999
Q ss_pred EeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy2427 177 FDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVS 256 (660)
Q Consensus 177 i~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (660)
+++++++.|.++.++ .+|+++|+||+++.++|++++++|++|+|+|++|+|++.. .
T Consensus 152 i~~~~~~~k~~~~~~-~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~Eay~s~~-------------------a---- 207 (387)
T 3uhj_A 152 RYTEHGVYEEALRLP-RNPDAVVVDSALVAAAPARFLVAGIGDALSTWFEARSNIE-------------------S---- 207 (387)
T ss_dssp EECTTSCEEEEEECS-CCCSEEEECHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH-------------------H----
T ss_pred EEcCCCceEeeeecC-CCCeEEEEChHHHhhCCHHHHHHHHHHHHHHHHHHHHHHh-------------------c----
Confidence 998877788888766 4899999999999999999999999999999999998720 0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
++. +.. .
T Consensus 208 --------------------~~~----------------------------------~~~----~--------------- 214 (387)
T 3uhj_A 208 --------------------RTD----------------------------------NYV----A--------------- 214 (387)
T ss_dssp --------------------TCC----------------------------------CSS----T---------------
T ss_pred --------------------CCc----------------------------------ccc----c---------------
Confidence 000 000 0
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 416 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~ 416 (660)
.+
T Consensus 215 -------------------------------------------------------------~~----------------- 216 (387)
T 3uhj_A 215 -------------------------------------------------------------GG----------------- 216 (387)
T ss_dssp -------------------------------------------------------------TC-----------------
T ss_pred -------------------------------------------------------------cc-----------------
Confidence 00
Q ss_pred ccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHH---HhcC
Q psy2427 417 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKR---AVYN 493 (660)
Q Consensus 417 d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~---~~~~ 493 (660)
| ........+|+.+++.|.+++++ +++|
T Consensus 217 ------------------------------------------------~-~~~~~a~~~a~~~~~~l~~~l~~a~~a~~~ 247 (387)
T 3uhj_A 217 ------------------------------------------------F-PATEAGMAIARHCQDVLTRDAVKAKIAVEA 247 (387)
T ss_dssp ------------------------------------------------C-CBCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------------------------------c-chhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 01224567899999999999995 6899
Q ss_pred CCCHHHHHHHHHHH-HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHH
Q psy2427 494 QDDLEARSHMHLAS-AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPER 572 (660)
Q Consensus 494 ~~~~~ar~~~~~as-~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~ 572 (660)
+.|.++|++|++|+ ++||++|+|+|++++|+|+|+|+++.. .+++|||++++
T Consensus 248 ~~~~~Ar~~m~~as~~laG~af~~ag~g~~Hai~h~L~~~~~----------~~~i~HG~~~a----------------- 300 (387)
T 3uhj_A 248 GLLTPAVENIIEANTLLSGLGFENCGCSAAHGIHDGLTVLEE----------VHGYFHGEKVA----------------- 300 (387)
T ss_dssp TCCCHHHHHHHHHHTHHHHHHHHHHCCCHHHHHHHHHTTSGG----------GTTSCHHHHHH-----------------
T ss_pred CCcHHHHHHHHHHHHHHhhhhhhccCcHHHHHhhhhhhcccC----------cCCCCchHHHH-----------------
Confidence 99999999999998 999999999999999999999998621 12799999887
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCC---CCcHHHHHHhhccCCCCCCCCCccCCHHHH
Q psy2427 573 HIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYT---SADIPALVTGTLPQHRITKLAPREQSEEDL 649 (660)
Q Consensus 573 ~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~---~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i 649 (660)
|..+++.++.. .+..+++++++|++++|+|++|+|+|++ +++++++++.|+.+.+...+||+++|+||+
T Consensus 301 ~~~la~~~~~~--------~~~~~i~~i~~l~~~lglP~~L~elGi~~~~~~~l~~ia~~a~~~~~~~~n~P~~~t~e~i 372 (387)
T 3uhj_A 301 FGTLCLLMLEN--------RDRAEIEAMIRFCRSVGLPTKLADLGIVDDVPAKIGRVAEAACRPGNIIYATPVTITVPAV 372 (387)
T ss_dssp HHHHHHHHHTT--------CCHHHHHHHHHHHHHHTCCCSGGGGTCCSSHHHHHHHHHHHHTSTTCGGGGSSSCCCHHHH
T ss_pred HHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCCCCHHHcCCCCCcHHHHHHHHHHHHcccchhhcCCCCCCHHHH
Confidence 34555554321 1123589999999999999999999999 789999999999766667789999999999
Q ss_pred HHHHHHHh
Q psy2427 650 ANLFENSM 657 (660)
Q Consensus 650 ~~il~~a~ 657 (660)
++||+++-
T Consensus 373 ~~il~~a~ 380 (387)
T 3uhj_A 373 RDAILALD 380 (387)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998763
|
| >1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-53 Score=459.74 Aligned_cols=348 Identities=17% Similarity=0.205 Sum_probs=288.8
Q ss_pred CceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHH
Q psy2427 20 KEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEA 99 (660)
Q Consensus 20 ~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~ 99 (660)
..|.|..| ++|+||.|++++++++++++| +|++||||+++.+....+++.+.|++.|+.+.+|++ +|+.++++++
T Consensus 13 ~~f~~~~p-~~i~~G~g~l~~l~~~l~~~g-~~~liVtd~~~~~~~~~~~v~~~L~~~g~~~~~~~g---e~~~~~v~~~ 87 (376)
T 1kq3_A 13 MITTTIFP-GRYVQGAGAINILEEELSRFG-ERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFGG---ECSDEEIERL 87 (376)
T ss_dssp CCBCCCCC-SEEEEETTGGGGHHHHHHTTC-SEEEEEECHHHHHHTTCTTGGGGCSSSEEEEEECCS---SCBHHHHHHH
T ss_pred cCcccCCC-ceEEECCCHHHHHHHHHHHcC-CeEEEEECccHHhhccHHHHHHHHHHcCCeEEEeCC---CCCHHHHHHH
Confidence 34566664 899999999999999999998 999999999987765468999999888866666654 8899999999
Q ss_pred HHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEee
Q psy2427 100 TKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDY 179 (660)
Q Consensus 100 ~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~ 179 (660)
.+.+++ ++|+||||||||++|+||++|.... +|+|+||||+|||||+|+++++++
T Consensus 88 ~~~~~~-~~d~IIavGGGsv~D~aK~iA~~~~------------------------~p~i~IPTTa~tgSevt~~avi~~ 142 (376)
T 1kq3_A 88 SGLVEE-ETDVVVGIGGGKTLDTAKAVAYKLK------------------------KPVVIVPTIASTDAPCSALSVIYT 142 (376)
T ss_dssp HTTCCT-TCCEEEEEESHHHHHHHHHHHHHTT------------------------CCEEEEESSCCCSCTTSSEEEEEC
T ss_pred HHHHhc-CCCEEEEeCCcHHHHHHHHHHHhcC------------------------CCEEEecCccccCcccCCeEEEEe
Confidence 999999 9999999999999999999995432 899999999999999999999998
Q ss_pred CCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q psy2427 180 EPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259 (660)
Q Consensus 180 ~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~l 259 (660)
++++.|.+..++ .+|++||+||+++.++|++++++|++|+|+|++|+|++..
T Consensus 143 ~~~~~k~~~~~~-~~P~~viiDp~l~~tlP~~~~aag~~Dal~h~~E~~~s~~--------------------------- 194 (376)
T 1kq3_A 143 PNGEFKRYLFLP-RNPDVVLVDTEIVAKAPARFLVAGMGDALATWFEAESCKQ--------------------------- 194 (376)
T ss_dssp TTSCEEEEEECS-SCCSEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred CCCCeEeeccCC-CCCcEEEEchHHHhhCCHHHHHHHHHHHHHHHHHHHHhhh---------------------------
Confidence 877778777765 7899999999999999999999999999999999998720
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHH
Q psy2427 260 ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 339 (660)
Q Consensus 260 a~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ava 339 (660)
.++ .+ ...
T Consensus 195 ----------------~~~----------------------------------~~-~~~--------------------- 202 (376)
T 1kq3_A 195 ----------------KYA----------------------------------PN-MTG--------------------- 202 (376)
T ss_dssp ----------------HTC----------------------------------BC-TTS---------------------
T ss_pred ----------------cCC----------------------------------cc-ccc---------------------
Confidence 000 00 000
Q ss_pred hhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccc
Q psy2427 340 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPL 419 (660)
Q Consensus 340 i~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~ 419 (660)
T Consensus 203 -------------------------------------------------------------------------------- 202 (376)
T 1kq3_A 203 -------------------------------------------------------------------------------- 202 (376)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHH---hcCCCC
Q psy2427 420 HTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA---VYNQDD 496 (660)
Q Consensus 420 ~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~---~~~~~~ 496 (660)
...+.+++.+++.+++.+.++++++ ++++.+
T Consensus 203 ----------------------------------------------~~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~ 236 (376)
T 1kq3_A 203 ----------------------------------------------RLGSMTAYALARLCYETLLEYGVLAKRSVEEKSV 236 (376)
T ss_dssp ----------------------------------------------SBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------------------------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 0123456788999999999999984 578899
Q ss_pred HHHHHHHHHHHH-HHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHH
Q psy2427 497 LEARSHMHLASA-MAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIE 575 (660)
Q Consensus 497 ~~ar~~~~~as~-~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ 575 (660)
.++|++|++|+. ++|++|.|.|.+++|+|+|.|+++.. .++++||+++++ ..
T Consensus 237 ~~ar~~~~~a~~~~aG~a~~n~g~~~~Hai~~~l~~~~~----------~~~i~HG~ava~-----------------g~ 289 (376)
T 1kq3_A 237 TPALEKIVEANTLLSGLGFESGGLAAAHAIHNGLTVLEN----------THKYLHGEKVAI-----------------GV 289 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTSGG----------GTTSCHHHHHHH-----------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHhChhhcccc----------cCCCCcHHHHHH-----------------HH
Confidence 999999999996 89999999999999999999987510 127999999984 22
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCC---CCcHHHHHHhhccCCCCCCCCCccCCHHHHHHH
Q psy2427 576 AAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYT---SADIPALVTGTLPQHRITKLAPREQSEEDLANL 652 (660)
Q Consensus 576 ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~---~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~i 652 (660)
+++.+.. +.+ ...++++++|++++|+|++|+|+|++ +++++++++.++.+.+...+||+++|+||+++|
T Consensus 290 ~~~~~~~---~~~-----~~~~~~i~~l~~~~glP~~l~~lgi~~~~~~~~~~~a~~a~~~~~~~~n~p~~~t~~~i~~i 361 (376)
T 1kq3_A 290 LASLFLT---DKP-----RKMIEEVYSFCEEVGLPTTLAEIGLDGVSDEDLMKVAEKACDKNETIHNEPQPVTSKDVFFA 361 (376)
T ss_dssp HHHHHHT---TCC-----HHHHHHHHHHHHHHTCCCSGGGGTCTTCCHHHHHHHHHHHTCTTSGGGGSSSCCCHHHHHHH
T ss_pred HHHHHhc---cCC-----HHHHHHHHHHHHHcCCCCCHHHcCCCCCCHHHHHHHHHHHhcccchhhcCCCCCCHHHHHHH
Confidence 3332211 111 22478999999999999999999998 789999999998765555667999999999999
Q ss_pred HHHHhh
Q psy2427 653 FENSMS 658 (660)
Q Consensus 653 l~~a~~ 658 (660)
|++++.
T Consensus 362 l~~a~~ 367 (376)
T 1kq3_A 362 LKAADR 367 (376)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999984
|
| >1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=444.76 Aligned_cols=348 Identities=16% Similarity=0.152 Sum_probs=289.2
Q ss_pred eeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHH
Q psy2427 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATK 101 (660)
Q Consensus 22 ~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~ 101 (660)
+.|.+ |++|+||.|++++++++++++| +|++||||+++.+ .+.+++.+.|++.|+++. |..+.++|+.++++++++
T Consensus 5 ~~~~~-p~~i~~G~g~~~~l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~-~~~~~ge~~~~~v~~~~~ 80 (370)
T 1jq5_A 5 RVFIS-PAKYVQGKNVITKIANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAE-EVVFSGEASRNEVERIAN 80 (370)
T ss_dssp BCCCC-CSEEEEETTGGGGHHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEE-EEECCSSCBHHHHHHHHH
T ss_pred eEecC-CCeEEECcCHHHHHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEE-EEeeCCCCCHHHHHHHHH
Confidence 45555 4899999999999999999998 9999999999877 467999999999999874 344567999999999999
Q ss_pred HhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCC
Q psy2427 102 FVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEP 181 (660)
Q Consensus 102 ~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~ 181 (660)
.++++++|+||||||||++|+||++|.... +|+|+||||+|||||+|+++++++++
T Consensus 81 ~~~~~~~d~IIavGGGsv~D~aK~iA~~~~------------------------~p~i~IPTTa~tgSevt~~avi~~~~ 136 (370)
T 1jq5_A 81 IARKAEAAIVIGVGGGKTLDTAKAVADELD------------------------AYIVIVPTAASTDAPTSALSVIYSDD 136 (370)
T ss_dssp HHHHTTCSEEEEEESHHHHHHHHHHHHHHT------------------------CEEEEEESSCCSSCTTCSEEEEECTT
T ss_pred HHHhcCCCEEEEeCChHHHHHHHHHHHhcC------------------------CCEEEeccccCCCcccCCeEEEEcCC
Confidence 999999999999999999999999995432 89999999999999999999999887
Q ss_pred CCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q psy2427 182 LKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWAR 261 (660)
Q Consensus 182 ~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~ 261 (660)
++.|.+..++ .+|++||+||+++.++|++++++|++|+|+|++|+|++..
T Consensus 137 ~~~k~~~~~~-~~P~~viiDp~ll~tlP~~~~a~g~~Dal~h~~E~~~~~~----------------------------- 186 (370)
T 1jq5_A 137 GVFESYRFYK-KNPDLVLVDTKIIANAPPRLLASGIADALATWVEARSVIK----------------------------- 186 (370)
T ss_dssp SCEEEEEECS-SCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred CceEeeccCC-CCCeEEEEChHHHHhCCHHHHHHHHHHHHHHHHHHHHhhh-----------------------------
Confidence 7778888876 6899999999999999999999999999999999998720
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhh
Q psy2427 262 FALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMS 341 (660)
Q Consensus 262 ~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~ 341 (660)
.++. + ..+
T Consensus 187 --------------~~~~----------------------------------~-~~~----------------------- 194 (370)
T 1jq5_A 187 --------------SGGK----------------------------------T-MAG----------------------- 194 (370)
T ss_dssp --------------HTCC----------------------------------C-TTS-----------------------
T ss_pred --------------cCCc----------------------------------c-ccc-----------------------
Confidence 0000 0 000
Q ss_pred HHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccc
Q psy2427 342 APAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHT 421 (660)
Q Consensus 342 l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~ 421 (660)
T Consensus 195 -------------------------------------------------------------------------------- 194 (370)
T 1jq5_A 195 -------------------------------------------------------------------------------- 194 (370)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHH---hcCCCCHH
Q psy2427 422 LSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA---VYNQDDLE 498 (660)
Q Consensus 422 ~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~---~~~~~~~~ 498 (660)
...+++++.+++.+++.+.++++++ ++++.+.+
T Consensus 195 --------------------------------------------~~~~~~~~~~a~~~~~~l~~~~~~a~~~~k~~~~~~ 230 (370)
T 1jq5_A 195 --------------------------------------------GIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTP 230 (370)
T ss_dssp --------------------------------------------SBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred --------------------------------------------ccccHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHH
Confidence 0123467888999999999999984 68889999
Q ss_pred HHHHHHHHHH-HHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHH
Q psy2427 499 ARSHMHLASA-MAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAA 577 (660)
Q Consensus 499 ar~~~~~as~-~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia 577 (660)
+|++|++|+. ++|++|.|.|.+++|+|+|.|+++... .++++||+++++ ..++
T Consensus 231 ar~~~~~a~~~~aG~a~~n~g~~~~Hai~~~l~~~~~~---------~~~i~HG~ava~-----------------g~~~ 284 (370)
T 1jq5_A 231 ALEAVVEANTLLSGLGFESGGLAAAHAIHNGFTALEGE---------IHHLTHGEKVAF-----------------GTLV 284 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHGGGSCSG---------GGGSCHHHHHHH-----------------HHHH
T ss_pred HHHHHHHHHHHHhHHHhhccccHHHHHHhhHhhccccC---------CCCCCcHHHHHH-----------------HHHH
Confidence 9999999996 899999999999999999999874200 126999999984 2223
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCC---CCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHH
Q psy2427 578 ELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYT---SADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654 (660)
Q Consensus 578 ~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~---~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~ 654 (660)
+.++. ..+ ...++++++|++++|+|++|+++|++ ++++++++++++...+.. .||+++|+|+++++|+
T Consensus 285 ~~~~~---~~~-----~~~~~~i~~l~~~~glP~~l~~~gi~~~~~~~~~~~a~~a~~~~~~~-~~p~~~~~~~i~~il~ 355 (370)
T 1jq5_A 285 QLALE---EHS-----QQEIERYIELYLCLDLPVTLEDIKLKDASREDILKVAKAATAEGETI-HNAFNVTADDVADAIF 355 (370)
T ss_dssp HHHHS---CCC-----HHHHHHHHHHHHHTTCCCSTTTTTCTTCCHHHHHHHHHHHTSTTCGG-GGTCCCCHHHHHHHHH
T ss_pred HHHHc---cCc-----HHHHHHHHHHHHHcCCCCCHHHcCCCcccHHHHHHHHHHHhCcchhh-hCCCCCCHHHHHHHHH
Confidence 32211 111 22478999999999999999999998 789999999998654433 4599999999999999
Q ss_pred HHhh
Q psy2427 655 NSMS 658 (660)
Q Consensus 655 ~a~~ 658 (660)
+++.
T Consensus 356 ~~~~ 359 (370)
T 1jq5_A 356 AADQ 359 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9884
|
| >1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-52 Score=456.00 Aligned_cols=351 Identities=18% Similarity=0.157 Sum_probs=287.3
Q ss_pred CceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHH
Q psy2427 20 KEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEA 99 (660)
Q Consensus 20 ~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~ 99 (660)
..+.|..| ++|+||.|++++++++++++|.+|++||||+++.+ .+.+++.+.|++.|+++. |..+.++|+.++|+++
T Consensus 62 ~~~~f~~p-~~i~~G~g~l~~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~-~~~~~ge~~~~~v~~~ 138 (450)
T 1ta9_A 62 KDRIFTSP-QKYVQGRHAFTRSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVT-KLVFGGEASLVELDKL 138 (450)
T ss_dssp SSEEEECC-SEEEEETTGGGGHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEE-EEEECSCCCHHHHHHH
T ss_pred cceEEeCC-ceEEECcCHHHHHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEE-EEeeCCCCCHHHHHHH
Confidence 34567664 89999999999999999999855999999999877 477999999999999873 3345568999999999
Q ss_pred HHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEee
Q psy2427 100 TKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDY 179 (660)
Q Consensus 100 ~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~ 179 (660)
++.+++ ++|+||||||||++|+||++|.... +|+|+||||+|||||+|+++++++
T Consensus 139 ~~~~~~-~~D~IIAvGGGSviD~AK~iA~~~g------------------------iP~I~IPTTAgtgSevt~~avI~~ 193 (450)
T 1ta9_A 139 RKQCPD-DTQVIIGVGGGKTMDSAKYIAHSMN------------------------LPSIICPTTASSDAATSSLSVIYT 193 (450)
T ss_dssp HTTSCT-TCCEEEEEESHHHHHHHHHHHHHTT------------------------CCEEEEESSCSCSCTTCSEEEEC-
T ss_pred HHHHhh-CCCEEEEeCCcHHHHHHHHHHHhcC------------------------CCEEEEeCCCccCcccCCceEEEe
Confidence 999999 9999999999999999999995432 899999999999999999999998
Q ss_pred CCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q psy2427 180 EPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259 (660)
Q Consensus 180 ~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~l 259 (660)
.+++.|.+..++ .+|++||+||+++.++|++++++|++|+|+|++|+|++..
T Consensus 194 ~~~~~k~~~~~~-~~P~~viiDp~ll~tlP~~~~aag~~DaL~h~~E~~~s~~--------------------------- 245 (450)
T 1ta9_A 194 PDGQFQKYSFYP-LNPNLIFIDTDVIVRAPVRFLISGIGDALSTWVETESVIR--------------------------- 245 (450)
T ss_dssp ---CCCEEEECS-SCCSEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred CCCceEEecccc-cCCcEEEEchHHHccCCHHHHHHHHHHHHHHHHHHHhccc---------------------------
Confidence 777778888876 7899999999999999999999999999999999998720
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHH
Q psy2427 260 ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 339 (660)
Q Consensus 260 a~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ava 339 (660)
.++. + ..+
T Consensus 246 ----------------a~~~----------------------------------~-l~~--------------------- 253 (450)
T 1ta9_A 246 ----------------SNST----------------------------------S-FAG--------------------- 253 (450)
T ss_dssp ----------------TTCC----------------------------------C-TTS---------------------
T ss_pred ----------------CCcc----------------------------------c-ccc---------------------
Confidence 0000 0 000
Q ss_pred hhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccc
Q psy2427 340 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPL 419 (660)
Q Consensus 340 i~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~ 419 (660)
T Consensus 254 -------------------------------------------------------------------------------- 253 (450)
T 1ta9_A 254 -------------------------------------------------------------------------------- 253 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHH---hcCCCC
Q psy2427 420 HTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRA---VYNQDD 496 (660)
Q Consensus 420 ~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~---~~~~~~ 496 (660)
...+.+++.+++.+++.+.++++++ ++++.|
T Consensus 254 ----------------------------------------------~~~~~~a~~~a~~~~~~l~~~l~~a~~~~k~~~~ 287 (450)
T 1ta9_A 254 ----------------------------------------------GVASIAGRYIARACKDTLEKYALSAILSNTRGVC 287 (450)
T ss_dssp ----------------------------------------------SBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ----------------------------------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 0123456788999999999999984 578889
Q ss_pred HHHHHHHHHHHH-HHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHH
Q psy2427 497 LEARSHMHLASA-MAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIE 575 (660)
Q Consensus 497 ~~ar~~~~~as~-~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ 575 (660)
.++|++|++|++ ++|++|.|.|.+++|+|+|.|+++... .++++||+++++ ..
T Consensus 288 ~ear~~m~~As~~laG~a~~n~G~~~~Hai~h~l~~~~~~---------~~~i~HG~avAi-----------------g~ 341 (450)
T 1ta9_A 288 TEAFENVVEANTLMSGLGFENGGLAAAHAIHNGMTAIHGP---------VHRLMHGEKVAY-----------------GT 341 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHGGGCGG---------GGGSCHHHHHHH-----------------HH
T ss_pred HHHHHHHHHHHHHHhhHHHhcCCchHHHHHhHHHhccccC---------cCCCCchHhhHH-----------------HH
Confidence 999999999998 899999999999999999999874100 126999999984 22
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCC---CCcHHHHHHhhccCCCCCCCCCccCCHHHHHHH
Q psy2427 576 AAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYT---SADIPALVTGTLPQHRITKLAPREQSEEDLANL 652 (660)
Q Consensus 576 ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~---~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~i 652 (660)
+++.++. +.. ...++++++|++++|+|++|+|+|++ +++++++++.++.+.+...++|+++|+||+++|
T Consensus 342 la~~~l~---~~~-----~~~i~~i~~l~~~lglP~~L~elgi~~~~~~~l~~~a~~a~~~~~~~~~~p~~~t~edi~~i 413 (450)
T 1ta9_A 342 LVQVVLE---DWP-----LEDFNNLASFMAKCHLPITLEELGIPNVTDEELLMVGRATLRPDESIHNMSKKFNPSQIADA 413 (450)
T ss_dssp HHHHHHT---TCC-----HHHHHHHHHHHHHTTCCCSHHHHTCTTCCHHHHHHHHHHHTCTTSGGGGSSSCCCHHHHHHH
T ss_pred HHHHHhc---cCC-----HHHHHHHHHHHHHcCCCCCHHHcCCCCCcHHHHHHHHHHHhhCcccccCCCCCCCHHHHHHH
Confidence 3332211 111 22478999999999999999999998 789999999998665555667999999999999
Q ss_pred HHHHhh
Q psy2427 653 FENSMS 658 (660)
Q Consensus 653 l~~a~~ 658 (660)
|++++.
T Consensus 414 l~~a~~ 419 (450)
T 1ta9_A 414 IKAVDS 419 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999873
|
| >3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=440.54 Aligned_cols=340 Identities=14% Similarity=0.136 Sum_probs=287.8
Q ss_pred CCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHH
Q psy2427 19 DKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~ 98 (660)
|+.+.|.+| ++|+||.|++++++++++++|.+|++||||+++.+. ..+++.+.|++.|+++.+|.+ .++|+.+.|++
T Consensus 4 M~~~~~~~p-~~i~~G~g~~~~l~~~l~~~g~~~~livtd~~~~~~-~~~~v~~~L~~~g~~~~~~~~-~~~~~~~~v~~ 80 (354)
T 3ce9_A 4 GISHRIAIP-LILEVGNNKIYNIGQIIKKGNFKRVSLYFGEGIYEL-FGETIEKSIKSSNIEIEAVET-VKNIDFDEIGT 80 (354)
T ss_dssp --CCCCCCC-SEEEEESSCGGGHHHHHGGGTCSEEEEEEETTHHHH-HHHHHHHHHHTTTCEEEEEEE-ECCCBHHHHHH
T ss_pred eeeeEEeCC-cEEEECCCHHHHHHHHHHhcCCCeEEEEECccHHHH-HHHHHHHHHHHcCCeEEEEec-CCCCCHHHHHH
Confidence 455667765 899999999999999999998899999999998774 679999999999999998887 79999999999
Q ss_pred HHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEe
Q psy2427 99 ATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFD 178 (660)
Q Consensus 99 ~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~ 178 (660)
+ +.+++.++|+||||||||++|+||++|.... +|+|+||||++||||+|+.++++
T Consensus 81 ~-~~~~~~~~d~IIavGGGsv~D~aK~vA~~~~------------------------~p~i~IPTT~~tgse~t~~avi~ 135 (354)
T 3ce9_A 81 N-AFKIPAEVDALIGIGGGKAIDAVKYMAFLRK------------------------LPFISVPTSTSNDGFSSPVASLL 135 (354)
T ss_dssp H-HTTSCTTCCEEEEEESHHHHHHHHHHHHHHT------------------------CCEEEEESCCSSGGGTSSEEEEE
T ss_pred H-HHhhhcCCCEEEEECChHHHHHHHHHHhhcC------------------------CCEEEecCcccCCCCCCCceEEE
Confidence 9 9999999999999999999999999995532 89999999999999999999999
Q ss_pred eCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy2427 179 YEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDV 258 (660)
Q Consensus 179 ~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (660)
+.+ .|..+ +..+|++||+||+++.++|++++++|++|+|+|+.|.+-..
T Consensus 136 ~~~--~K~~i--~~~~P~~vi~Dp~ll~tlP~~~~~~g~~Dal~h~~~~~d~~--------------------------- 184 (354)
T 3ce9_A 136 ING--KRTSV--PAKTPDGIVVDIDVIKGSPEKFIYSGIGDLVSNITALYDWK--------------------------- 184 (354)
T ss_dssp ETT--EEEEE--ECCCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred eCC--ceeee--cCCCCcEEEEcHHHHHhCCHHHHHhhHHHHHHHHHHHHHHH---------------------------
Confidence 864 35555 36789999999999999999999999999999998764210
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 259 WARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 259 la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
+...+
T Consensus 185 ------------~~~~~--------------------------------------------------------------- 189 (354)
T 3ce9_A 185 ------------FEEEN--------------------------------------------------------------- 189 (354)
T ss_dssp ------------HHHHT---------------------------------------------------------------
T ss_pred ------------HHHhh---------------------------------------------------------------
Confidence 00000
Q ss_pred HhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccc
Q psy2427 339 VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDP 418 (660)
Q Consensus 339 ai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~ 418 (660)
T Consensus 190 -------------------------------------------------------------------------------- 189 (354)
T 3ce9_A 190 -------------------------------------------------------------------------------- 189 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy2427 419 LHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLE 498 (660)
Q Consensus 419 ~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ 498 (660)
.+ ...+|+++.+++++++.+.++++.+++ +.+
T Consensus 190 --------------------------~~-------------------~~~~~~~~~la~~~~~~i~~~l~~~~~---~~~ 221 (354)
T 3ce9_A 190 --------------------------HK-------------------SIIDDFAVMISKKSVNSFVRTDFKSIK---DEV 221 (354)
T ss_dssp --------------------------TS-------------------CCCCHHHHHHHHHHHHHHHHCCCSCTT---CHH
T ss_pred --------------------------cc-------------------CCCCHHHHHHHHHHHHHHHHhHHHHhc---CHH
Confidence 00 034567788888888888888766655 788
Q ss_pred HHHHHHHHHHHHhHhhhcccc-----hhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHH
Q psy2427 499 ARSHMHLASAMAGVGFGNAGV-----HLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERH 573 (660)
Q Consensus 499 ar~~~~~as~~ag~~~~~~g~-----~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~ 573 (660)
+|++|++++++||++|+++|+ |..|+++|.|++.+. ++++||+++++. +.++.|+...
T Consensus 222 ~~~~~l~a~~~aG~a~~~~g~~r~~~g~~H~i~hal~~~~~-----------~~~~HG~avai~-~~~~~~~~~~----- 284 (354)
T 3ce9_A 222 FLKELVDSLTMNGIAMEIAGNSSPASGAEHLISHALDKFLP-----------NPQLHGIQVGVA-TYIMSKVHKH----- 284 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSTTTCSHHHHHHHHHHHHCS-----------SCCCHHHHHHHH-HHHHHHHHTS-----
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCcccchHHHHhHHHHhCCC-----------CCCCcHHHHHHH-HHHHHHHccc-----
Confidence 999999999999999999998 799999999998641 269999999997 5888887641
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccC--CCCCCCCCccCCHHHHHH
Q psy2427 574 IEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQ--HRITKLAPREQSEEDLAN 651 (660)
Q Consensus 574 ~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~--~~~~~~~P~~~t~e~i~~ 651 (660)
..+++++|++++|+|++|+++|+++++++++++.+... +++..+||+++|+||+++
T Consensus 285 ----------------------~~~~i~~l~~~~glP~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 342 (354)
T 3ce9_A 285 ----------------------REERIKKILSDTGFFNYVKGLNMKKSDFKRAISEAHLIKPARYTYLHVEKNCETAKEI 342 (354)
T ss_dssp ----------------------SHHHHHHHHHHTTHHHHHHTTCCCHHHHHHHHHHHHHHSTTSCCGGGSHHHHHHHHHH
T ss_pred ----------------------cHHHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHHhccCceeecCCCCCCHHHHHH
Confidence 14679999999999999999999999999999988642 466667999999999999
Q ss_pred HHHHHhhc
Q psy2427 652 LFENSMSV 659 (660)
Q Consensus 652 il~~a~~~ 659 (660)
||+.++.+
T Consensus 343 i~~~~~~~ 350 (354)
T 3ce9_A 343 VDTDEILR 350 (354)
T ss_dssp HHHCHHHH
T ss_pred HHHhHHHH
Confidence 99987643
|
| >1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=337.50 Aligned_cols=268 Identities=20% Similarity=0.201 Sum_probs=207.2
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCC-CeEEEEeCcccCCCHHHHHHHHHHhHhc
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHG-VKFELFDKVRVEPTGDSFLEATKFVRSV 106 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~g-i~~~~~~~~~~~p~~~~v~~~~~~~~~~ 106 (660)
|++|+||.|++++++++++++ +|++||||+++.+. +.+++.+.| +.| +.+.+|++++++|+.+.++++++.++++
T Consensus 11 ~~~i~~G~g~l~~l~~~l~~~--~~~liVtd~~~~~~-~~~~v~~~L-~~g~~~~~~~~~~e~~p~~~~v~~~~~~~~~~ 86 (354)
T 1xah_A 11 NYPIYVEHGAIKYIGTYLNQF--DQSFLLIDEYVNQY-FANKFDDIL-SYENVHKVIIPAGEKTKTFEQYQETLEYILSH 86 (354)
T ss_dssp CCEEEEETTGGGHHHHHHTTC--SCEEEEEEHHHHHH-HHHHHC-------CEEEEEECSGGGGCSHHHHHHHHHHHHTT
T ss_pred CccEEEcCChHHHHHHHHHhc--CeEEEEECCcHHHH-HHHHHHHHH-hcCCeEEEEECCCCCCCCHHHHHHHHHHHHHc
Confidence 579999999999999999887 89999999998877 779999999 777 6667899999999999999999999999
Q ss_pred CC---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCc-CccccCceEEeeCCC
Q psy2427 107 QC---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT-GSETTGVSIFDYEPL 182 (660)
Q Consensus 107 ~~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gt-gse~s~~avi~~~~~ 182 (660)
++ |+||||||||++|+||++|..+.++ +|+|+||||+++ +|+++...+++++..
T Consensus 87 ~~~r~d~iIavGGGsv~D~ak~vA~~~~rg----------------------ip~i~IPTT~~a~ds~vg~K~~i~~~~~ 144 (354)
T 1xah_A 87 HVTRNTAIIAVGGGATGDFAGFVAATLLRG----------------------VHFIQVPTTILAHDSSVGGKVGINSKQG 144 (354)
T ss_dssp CCCTTCEEEEEESHHHHHHHHHHHHHBTTC----------------------CEEEEEECSTTHHHHTSSCEEEECCSSS
T ss_pred CCCCCceEEEECChHHHHHHHHHHHHhccC----------------------CCEEEECCcccccccccCceEEEEcCCc
Confidence 99 9999999999999999999988755 999999999866 688888888876543
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH---HHhhcCCCCCCCCCCCCCCCCCCCCCCCHHH--H
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL---ESFTALPYTERTPCPTDPLLRPAYQGQNPVS--D 257 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai---E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s--~ 257 (660)
+ .+.++..+|++||+||+++.++|++++++|++|+|+|++ |+|++. ..++++ +
T Consensus 145 k---n~~g~~~~P~~viiDp~~l~tlP~~~~~aG~~d~lkha~i~De~~~~~-------------------~~~~~~~~~ 202 (354)
T 1xah_A 145 K---NLIGAFYRPTAVIYDLDFLKTLPFKQILSGYAEVYKHALLNGESATQD-------------------IEQHFKDRE 202 (354)
T ss_dssp T---TCEEEECCCSEEEEEGGGGGGCCHHHHHHHHHHHHHHHHHHCHHHHHH-------------------HHHHSCSHH
T ss_pred e---eeeecCCCCcEEEEcHHHHhhCCHHHHHHHHHHHHHHHHHcCHHHHHH-------------------HHhhhhhhh
Confidence 2 334445679999999999999999999999999999999 898873 123333 4
Q ss_pred HH-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 258 VW-ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 258 ~l-a~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
.+ ++ +.+.+.++++++++.+..+|+.... ++.++. +++|+++|+|+ .+ + +++||+
T Consensus 203 ~~~a~---~~l~~~l~~~~~~~~~~~~~d~~e~----g~r~~l----~~gHt~~Hale-~~---~---------~~~HG~ 258 (354)
T 1xah_A 203 ILQSL---NGMDKYIAKGIETKLDIVVADEKEQ----GVRKFL----NLGHTFGHAVE-YY---H---------KIPHGH 258 (354)
T ss_dssp HHHHT---TTHHHHHHHHHHHHHHHHHHSTTSS----SGGGGG----GTTTHHHHHHH-HH---H---------CCCHHH
T ss_pred hhhHH---HHHHHHHHHHHHHHHHHhccCchhh----CCcccc----ccHHHHHHHHh-cC---C---------CCCcHH
Confidence 44 33 5567777777665555544433221 333444 45566666666 32 0 299999
Q ss_pred HHHhhHHHHHHhhhc-----CCchhhhhHhhhhccc
Q psy2427 337 SVVMSAPAVFNFTAA-----SSPERHIEAAELLGAD 367 (660)
Q Consensus 337 avai~l~~~l~~~~~-----~~~er~~~la~~lg~~ 367 (660)
+||++||.+.++... ...+++.++.+.+|+|
T Consensus 259 avaig~~~~~~la~~~g~~~~~~~~i~~l~~~~glP 294 (354)
T 1xah_A 259 AVMVGIIYQFIVANALFDSKHDISHYIQYLIQLGYP 294 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCcC
Confidence 999999999887642 4557777788888853
|
| >2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-38 Score=335.82 Aligned_cols=275 Identities=13% Similarity=0.057 Sum_probs=206.1
Q ss_pred cceEEECcChHHHHHHHHHhc-CCCEEEEEECccccccchHHHHHHHHHhCCCeE--EEEeCcccCCCHHHHHHHHHHhH
Q psy2427 28 SSTIRIGPGVTREVGMDMVNM-KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKF--ELFDKVRVEPTGDSFLEATKFVR 104 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~-g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~--~~~~~~~~~p~~~~v~~~~~~~~ 104 (660)
|.+|+||.|+++++++++ ++ +.+|++||||+++.+. +.+++.+.|++. +.+ .+|++.+++|+.+.+.++++.++
T Consensus 12 ~~~i~~G~g~l~~l~~~l-~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~-~~~~~~~~~~ge~~k~~~~v~~~~~~~~ 88 (368)
T 2gru_A 12 CFNFAFGEHVLESVESYI-PRDEFDQYIMISDSGVPDS-IVHYAAEYFGKL-APVHILRFQGGEEYKTLSTVTNLQERAI 88 (368)
T ss_dssp EEEEEEETTSGGGGGGTS-CTTSCSEEEEEEETTSCHH-HHHHHHHHHTTT-SCEEEEEECCSGGGCSHHHHHHHHHHHH
T ss_pred CceEEEeCCHHHHHHHHH-hccCCCEEEEEECCcHHHH-HHHHHHHHHHhc-cceeEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 478999999999999988 76 4589999999998877 679999999876 554 67899999999999999999999
Q ss_pred hcC---CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCC--CCcCccccCceEEee
Q psy2427 105 SVQ---CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTT--SGTGSETTGVSIFDY 179 (660)
Q Consensus 105 ~~~---~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt--~gtgse~s~~avi~~ 179 (660)
+++ +|+||||||||++|+||++|..+.++ +|+|+|||| +++||++++++++++
T Consensus 89 ~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~rg----------------------ip~i~IPTTlla~tdS~v~~kt~I~~ 146 (368)
T 2gru_A 89 ALGANRRTAIVAVGGGLTGNVAGVAAGMMFRG----------------------IALIHVPTTFLAASDSVLSIKQAVNL 146 (368)
T ss_dssp HTTCCTTEEEEEEESHHHHHHHHHHHHHBTTC----------------------CEEEEEECSHHHHHTTTSSCEEEEEE
T ss_pred hcCCCCCcEEEEECChHHHHHHHHHHHHhcCC----------------------CCEEEECCchHhhcCCCcCCeEEEEC
Confidence 988 69999999999999999999988765 999999998 589999999999998
Q ss_pred CCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q psy2427 180 EPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259 (660)
Q Consensus 180 ~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~l 259 (660)
+..+.+.+ ...+|++||+||+++.|+|++++++|++|+|+|++++.+.. +..... + ...+.... .
T Consensus 147 ~~~Kn~ig---~~~~P~~viiD~~~l~tlP~~~~~aG~~d~lkha~i~d~~~-~~~l~~---~---~~~l~~~~---~-- 211 (368)
T 2gru_A 147 TSGKNLVG---FYYPPRFVFADTRILSESPPRQVKAGMCELVKNMLILENDN-KEFTED---D---LNSANVYS---P-- 211 (368)
T ss_dssp TTEEEEEE---EECCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHSCCSC-CSCCGG---G---CCTTCCCC---H--
T ss_pred CCceeEee---cCCCCCEEEEchHHHcCCCHHHHHHHHHHHHHHHHHcCHHH-HHHHHh---h---HHHHHhhc---H--
Confidence 65433333 44579999999999999999999999999999999873321 000000 0 00000000 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-hhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 260 ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGV-GFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 260 a~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~-a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
+.+.+.+.+.+... + ..+..+...+|+ ++.|.|++++|+|+|.++ + .++||++|
T Consensus 212 -----~~l~~~i~~~~~~k----~-~~v~~d~~e~G~r~~ln~Ght~~Haie~~~~--~-------------~~~HGeav 266 (368)
T 2gru_A 212 -----KQLETFINFCISAK----M-SVLSEDIYEKKKGLIFEYGHTIGHAIELAEQ--G-------------GITHGEAI 266 (368)
T ss_dssp -----HHHHHHHHHHHHHH----H-HHHTTCTTSSSGGGGGGTTHHHHHHHHHHTT--T-------------SSCHHHHH
T ss_pred -----HHHHHHHHHHHHHH----H-HHhccCchhhCchhhhcchhHHHHHHHHccC--C-------------CCChHHHH
Confidence 11112222211100 0 012223356788 688999999999988875 2 29999999
Q ss_pred HhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 339 VMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 339 ai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
|++|+.++.+... ...+++.++.+.+|.|
T Consensus 267 Aigm~~~~~la~~~g~~~~~~~~~i~~ll~~~glP 301 (368)
T 2gru_A 267 AVGMIYAAKIANRMNLMPEHDVSAHYWLLNKIGAL 301 (368)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999887653 2345666677777753
|
| >1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=339.28 Aligned_cols=288 Identities=15% Similarity=0.145 Sum_probs=208.4
Q ss_pred CCceeEEeccceEEECcCh-HHHHHHHH-HhcCCCEEEEEECccccccchHHHHHHHHHhC------CCeE--EEEeCcc
Q psy2427 19 DKEYAFEMASSTIRIGPGV-TREVGMDM-VNMKAQRVCVMTDPHLSKLAPVKATLDSLTRH------GVKF--ELFDKVR 88 (660)
Q Consensus 19 ~~~~~~~~~~~~i~~G~g~-~~~l~~~l-~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~------gi~~--~~~~~~~ 88 (660)
|..|.|..+ ++|+||.|+ ++++++.+ +.++.+|++||||+++.+. +.+++.+.|++. |+++ .++...+
T Consensus 4 ~~~f~~~~~-~~i~~G~g~~~~~l~~~~~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE 81 (393)
T 1sg6_A 4 PTKISILGR-ESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLIYNRPPGE 81 (393)
T ss_dssp CEEEEETTE-EEEEEETTHHHHTHHHHHHHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEEEEECSSG
T ss_pred ceeEEecCC-ceEEEeCCccHHHHHHHHHHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEEEEeCCCC
Confidence 667777664 899999999 78899775 6677799999999998877 779999999887 7776 3677888
Q ss_pred cCCCHHHHHHHHHHhHhcC--C---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcC
Q psy2427 89 VEPTGDSFLEATKFVRSVQ--C---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPT 163 (660)
Q Consensus 89 ~~p~~~~v~~~~~~~~~~~--~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPT 163 (660)
++|+.++++++++.+++++ + |+||||||||++|+||++|..+.++ +|+|+|||
T Consensus 82 ~~k~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~rg----------------------ip~i~IPT 139 (393)
T 1sg6_A 82 VSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYMRG----------------------VRYVQVPT 139 (393)
T ss_dssp GGSSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGGGC----------------------CEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHhcCC----------------------CCEEEECC
Confidence 8999999999999999999 9 9999999999999999999988765 99999999
Q ss_pred CCCcCccccCceEEeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH--------------HHhh
Q psy2427 164 TSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL--------------ESFT 229 (660)
Q Consensus 164 t~gtgse~s~~avi~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai--------------E~~~ 229 (660)
|++++++++ +++++..+.+.|+.+.++..+|++||+||+++.|+|++++++|++|+++|++ |+|+
T Consensus 140 Tlla~~das-vg~kt~i~~~~~kn~~g~~~~P~~viiD~~~l~tlP~~~~~sG~aE~iK~~~i~d~~~~~~l~~~~e~~~ 218 (393)
T 1sg6_A 140 TLLAMVDSS-IGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETIL 218 (393)
T ss_dssp SHHHHHTTT-SSCEEEEEETTEEEEEEEECCCSEEEEEGGGGGTSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chhhhhhcC-cceEEeecCCCcccccccccCCcEEEEchHHHccCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHH
Confidence 998887773 5555443344566677777889999999999999999999999988887754 4444
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccc
Q psy2427 230 ALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGL 309 (660)
Q Consensus 230 s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i 309 (660)
+.. .+|+++.+ .+++.+.+.++.++.+..+.+++. +......+|+. .+++++|++
T Consensus 219 ~~~-------------------~~~~~d~~--~a~~~i~~~l~~~i~~~~~~k~~~-v~~d~~e~G~~---~~l~~gHt~ 273 (393)
T 1sg6_A 219 KAV-------------------RREVTPGE--HRFEGTEEILKARILASARHKAYV-VSADEREGGLR---NLLNWGHSI 273 (393)
T ss_dssp HHH-------------------HCCCCTTS--CTTGGGHHHHHHHHHHHHHHHHHH-HHC-----CGG---GGGGTTHHH
T ss_pred hhc-------------------cccccchh--hhHHHHHHHHHHHHHHHHHHHHHH-hCcChhhhcch---hhhChHHHH
Confidence 310 11111110 111222233333333222222221 11233345552 267789999
Q ss_pred cccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 310 SYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 310 ~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
+|+|+..+. +.++||++||++|+...++... ...+++.++.+.+|+|
T Consensus 274 ~Hale~~~~-----------~~~~HGeavAigm~~~~~la~~~g~~~~~~~~~i~~ll~~~glP 326 (393)
T 1sg6_A 274 GHAIEAILT-----------PQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLP 326 (393)
T ss_dssp HHHHHHHHT-----------TTSCHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCC-----------CCCCcHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 999987642 1399999999999988776542 2345666677777754
|
| >3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=313.91 Aligned_cols=261 Identities=16% Similarity=0.178 Sum_probs=193.0
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
+.+|+| |+++++++ + +|++||||+++.+. +.+++.+.|++.++.+.+|++++++|+.+.++++++.+++++
T Consensus 12 ~~~i~~--g~l~~l~~-----~-~~~livtd~~v~~~-~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~ 82 (343)
T 3clh_A 12 NYKVFL--GELPEIKL-----K-QKALIISDSIVAGL-HLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEMQ 82 (343)
T ss_dssp SCBEEE--SSCCCEEC-----S-SCEEEEEEHHHHTT-THHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHTT
T ss_pred ceEEEE--EehhhcCC-----C-CEEEEEECCcHHHH-HHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhcC
Confidence 478888 88877764 4 89999999998876 679999999877888888999999999999999999999999
Q ss_pred C---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCC--CCcCccccCceEEeeCCC
Q psy2427 108 C---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTT--SGTGSETTGVSIFDYEPL 182 (660)
Q Consensus 108 ~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt--~gtgse~s~~avi~~~~~ 182 (660)
+ |+||||||||++|+||++|..+.++ +|+|+|||| +++||.+++...++.+
T Consensus 83 ~~r~d~iIavGGGsv~D~ak~~A~~~~rg----------------------ip~i~IPTTlla~vDasvg~k~~v~~~-- 138 (343)
T 3clh_A 83 LNRHSLMIALGGGVISDMVGFASSIYFRG----------------------IDFINIPTTLLAQVDASVGGKTGINTP-- 138 (343)
T ss_dssp CCTTCEEEEEESHHHHHHHHHHHHHBTTC----------------------CEEEEEECSHHHHHTTSSSCEEEEEET--
T ss_pred CCCCceEEEECChHHHHHHHHHHHHhccC----------------------CCEEEeCCchhhccccccCCeEEEECc--
Confidence 9 9999999999999999999988765 999999999 4557788887777654
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH---HHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL---ESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVW 259 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai---E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~l 259 (660)
+.|..+ ++..+|++||+||+++.|+|++++++|++|+|+|++ |.|++... .+++++.
T Consensus 139 ~~Kn~i-g~~~~P~~vi~D~~~l~tlP~~~~~ag~~d~lkh~~i~d~~~~~~l~------------------~~~~~~~- 198 (343)
T 3clh_A 139 YGKNLI-GSFHQPKAVYMDLAFLKTLEKREFQAGVAEIIKMAVCFDKNLVERLE------------------TKDLKDC- 198 (343)
T ss_dssp TEEEEE-EEECCCSEEEECTTSGGGSCHHHHHHHHHHHHHHHHHHCHHHHHHHH------------------HSCTTTS-
T ss_pred cccccc-ccCCCCCEEEEcHHHHhcCCHHHHHhHHHHHHHHHHHcCHHHHHHHH------------------hCcCCHH-
Confidence 456555 567889999999999999999999999999999999 67765310 0112222
Q ss_pred HHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHH
Q psy2427 260 ARFALQTIRQYFKRAV-YNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSV 338 (660)
Q Consensus 260 a~~ai~~i~~~l~~~~-~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~av 338 (660)
+.+.++...+.-...+ .|+.+...|. ..+++|+++|+|+...+ |+ .++||++|
T Consensus 199 ~~~~i~~~~~~k~~vv~~d~~e~g~r~----------------~ln~gHt~~Hale~~~~-~~---------~~~HGeav 252 (343)
T 3clh_A 199 LEEVIFQSVNIKAQVVVQDEKEQNIRA----------------GLNYGHTFGHAIEKETD-YE---------RFLHGEAI 252 (343)
T ss_dssp HHHHHHHHHHHHHHHC---------CT----------------TTTTTHHHHHHHHHHTT-TS---------SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHH----------------HHhhHHHHHHHHHhhcC-CC---------CCChHHHH
Confidence 2333333333323332 2443333333 12356777777765421 10 39999999
Q ss_pred HhhHHHHHHhhhc------CCchhhhhHhhhhccc
Q psy2427 339 VMSAPAVFNFTAA------SSPERHIEAAELLGAD 367 (660)
Q Consensus 339 ai~l~~~l~~~~~------~~~er~~~la~~lg~~ 367 (660)
|++|+.++++... ...+++.++.+.+|.|
T Consensus 253 Aig~~~~~~la~~~g~~~~~~~~~i~~ll~~~glP 287 (343)
T 3clh_A 253 AIGMRMANDLALSLGMLTLKEYERIENLLKKFDLI 287 (343)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999887642 2346666677777753
|
| >3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=306.00 Aligned_cols=171 Identities=23% Similarity=0.230 Sum_probs=151.9
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHHhHh
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~~~~ 105 (660)
+.+|+||.|++++++ +++..+.+|++||||+++.+. +.+++.+.|++.|+++. +|++++++|+.+.++++++.+++
T Consensus 41 ~y~I~~G~g~l~~l~-~l~~~~~~rvlIVtd~~v~~~-~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~ 118 (390)
T 3okf_A 41 SYPISIGAGLFANPA-LLSLSAKQKVVIVTNHTVAPL-YAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLE 118 (390)
T ss_dssp CEEEEEETTGGGCGG-GGCCCTTCEEEEEEETTTHHH-HHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHH
T ss_pred CCCEEEeCCHHHhHH-HHHhcCCCEEEEEECCcHHHH-HHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHh
Confidence 678999999999999 887766799999999999877 77999999999998864 57899999999999999999999
Q ss_pred cCC---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeC
Q psy2427 106 VQC---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYE 180 (660)
Q Consensus 106 ~~~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~ 180 (660)
+++ |+||||||||++|+||++|..+.++ +|+|+||||+ +++|.+++.++++.+
T Consensus 119 ~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rg----------------------ip~I~IPTTlla~vDssvggkt~I~~~ 176 (390)
T 3okf_A 119 HNYSRDVVVIALGGGVIGDLVGFAAACYQRG----------------------VDFIQIPTTLLSQVDSSVGGKTAVNHP 176 (390)
T ss_dssp TTCCTTCEEEEEESHHHHHHHHHHHHHBTTC----------------------CEEEEEECSHHHHHHTSSSCEEEEEET
T ss_pred cCCCcCcEEEEECCcHHhhHHHHHHHHhcCC----------------------CCEEEeCCCCccccccCcCCeEEEEcC
Confidence 999 7999999999999999999888765 9999999995 667888888888876
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 225 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai 225 (660)
..+...+.+ ..|++||+||+++.++|++++++|++|+|+|++
T Consensus 177 ~~Kn~ig~f---~~P~~ViiD~~~l~tlP~r~~~aG~~D~lkha~ 218 (390)
T 3okf_A 177 LGKNMIGAF---YQPKAVVIDTDCLTTLPAREFAAGMAEVIKYGI 218 (390)
T ss_dssp TEEEEEEEE---CCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCceEEeec---cCCCEEEEcHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 544444433 469999999999999999999999999999997
|
| >1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-34 Score=301.70 Aligned_cols=258 Identities=14% Similarity=0.094 Sum_probs=191.5
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|++|+||.|++++++++ + +|++||||+++.+ +.+++.+.|+ .++. .+|++++++|+.+.++++++.+++++
T Consensus 11 ~~~i~~G~g~l~~l~~~----~-~kvliVtd~~v~~--~~~~v~~~L~-~~~~-~~~~~ge~~~~~~~v~~~~~~~~~~~ 81 (348)
T 1ujn_A 11 PYPILVGEGVLKEVPPL----A-GPAALLFDRRVEG--FAQEVAKALG-VRHL-LGLPGGEAAKSLEVYGKVLSWLAEKG 81 (348)
T ss_dssp CEEEEEESCGGGGSCCC----S-SCEEEEEEGGGHH--HHHHHHHHHT-CCCE-EEECCSGGGSSHHHHHHHHHHHHHHT
T ss_pred CeeEEEcCChHHhhHhh----C-CEEEEEECCcHHH--HHHHHHHHhc-cCeE-EEECCCCCCCCHHHHHHHHHHHHHcC
Confidence 57999999999988764 4 8999999999877 6799999998 6778 88999999999999999999999988
Q ss_pred C---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeCCC
Q psy2427 108 C---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYEPL 182 (660)
Q Consensus 108 ~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~~~ 182 (660)
+ |+||||||||++|+||++|..+.++ +|+|+||||+ +++|.+++...++.+..
T Consensus 82 ~~r~d~IIavGGGsv~D~ak~~A~~~~rg----------------------ip~i~IPTTlla~vds~~g~k~~i~~~~~ 139 (348)
T 1ujn_A 82 LPRNATLLVVGGGTLTDLGGFVAATYLRG----------------------VAYLAFPTTTLAIVDASVGGKTGINLPEG 139 (348)
T ss_dssp CCTTCEEEEEESHHHHHHHHHHHHHBTTC----------------------CEEEEEECSHHHHHTTTSSCEEEEEETTE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhccC----------------------CCEEEecCcHHHhhccccCceEEEecCCc
Confidence 7 8999999999999999999987755 8999999996 34677788877776532
Q ss_pred CceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHH---Hhh---cCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy2427 183 KAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALE---SFT---ALPYTERTPCPTDPLLRPAYQGQNPVS 256 (660)
Q Consensus 183 ~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE---~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (660)
| .+.+....|++||+||+++.++|++++++|++|+|+|+++ .|+ +.. ..++
T Consensus 140 --k-n~ig~~~~P~~vi~D~~~l~tlP~~~~~aG~~d~lkh~~i~d~~~~~~~~~l------------------~~~~-- 196 (348)
T 1ujn_A 140 --K-NLVGAFHFPQGVYAELRALKTLPLPTFKEGLVEAFKHGLIAGDEALLKVEDL------------------TPQS-- 196 (348)
T ss_dssp --E-EEEEEECCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHHTCGGGGCCTTC------------------CTTC--
T ss_pred --c-eeeccCcCCCEEEECHHHHhhCCHHHHHhHHHHHHHHHHHcCHHHhcchHHH------------------HhhH--
Confidence 3 3434556799999999999999999999999999999996 455 310 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
+.+.+...+.+......+..|+.+... +...+++|+++|+|+...+ ++++||+
T Consensus 197 ~~l~~~i~~~~~~k~~~v~~d~~e~g~----------------r~~ln~GHt~~Hale~~~~-----------~~~~HGe 249 (348)
T 1ujn_A 197 PRLEAFLARAVAVKVRVTEEDPLEKGK----------------RRLLNLGHTLGHALEAQTR-----------HALPHGM 249 (348)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCTTSSSG----------------GGGGGTTHHHHHHHHHHTT-----------TCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCchhhch----------------hhHhcchHHHHHHHHhccC-----------CCCChHH
Confidence 222211112222222222334433211 1234456777777765421 1399999
Q ss_pred HHHhhHHHHHHhhhc----CCchhhhhHhhhhccc
Q psy2427 337 SVVMSAPAVFNFTAA----SSPERHIEAAELLGAD 367 (660)
Q Consensus 337 avai~l~~~l~~~~~----~~~er~~~la~~lg~~ 367 (660)
+||++|+...++... ...+++.++.+.+| |
T Consensus 250 avAig~~~~~~la~~~g~~~~~~~i~~ll~~~g-P 283 (348)
T 1ujn_A 250 AVAYGLLYAALLGRALGGEDLLPPVRRLLLWLS-P 283 (348)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-C
Confidence 999999988877532 35567777777777 5
|
| >3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=299.42 Aligned_cols=169 Identities=17% Similarity=0.219 Sum_probs=148.9
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEE--EEeCcccCCCHHHHHHHHHHhHh
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFE--LFDKVRVEPTGDSFLEATKFVRS 105 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~--~~~~~~~~p~~~~v~~~~~~~~~ 105 (660)
|++|+||.|+++++++++++. +|++||||+++.+. .+++.+.|++.|+++. +|++++++|+.++++++++.+++
T Consensus 23 ~~~I~~G~g~l~~l~~~l~~~--~rvlIVtd~~v~~~--~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~ 98 (368)
T 3qbe_A 23 PYPVVIGTGLLDELEDLLADR--HKVAVVHQPGLAET--AEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGR 98 (368)
T ss_dssp CEEEEEESCCHHHHHHHHTTC--SEEEEEECGGGHHH--HHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHH
T ss_pred CceEEEcCCHHHHHHHHHHcC--CEEEEEECccHHHH--HHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999874 89999999998875 5899999999998864 57889999999999999999998
Q ss_pred cC---CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC--cCccccCceEEeeC
Q psy2427 106 VQ---CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG--TGSETTGVSIFDYE 180 (660)
Q Consensus 106 ~~---~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g--tgse~s~~avi~~~ 180 (660)
++ +|+||||||||++|+||++|..+.++ +|+|+||||++ ++|.+++...++.+
T Consensus 99 ~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rg----------------------ip~i~IPTTlla~vDssvggkt~V~~~ 156 (368)
T 3qbe_A 99 IGIGRKDALVSLGGGAATDVAGFAAATWLRG----------------------VSIVHLPTTLLGMVDAAVGGKTGINTD 156 (368)
T ss_dssp HTCCTTCEEEEEESHHHHHHHHHHHHHGGGC----------------------CEEEEEECSHHHHHTTTSSCEEEEEET
T ss_pred cCCCCCcEEEEECChHHHHHHHHHHHHhccC----------------------CcEEEECCCCccccccCcCceEEEECC
Confidence 76 59999999999999999999888765 89999999976 68899888777654
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 225 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~hai 225 (660)
. .| .+.+....|++||+||+++.++|++++++|++|+++|++
T Consensus 157 ~--~K-n~ig~~~~P~~viiDp~~l~tlP~r~~~sG~ad~ik~~~ 198 (368)
T 3qbe_A 157 A--GK-NLVGAFHQPLAVLVDLATLQTLPRDEMICGMAEVVKAGF 198 (368)
T ss_dssp T--EE-EEEEEECCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred C--Cc-eeeccccCCCEEEEcHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 3 23 344455679999999999999999999999999999987
|
| >2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-20 Score=197.14 Aligned_cols=198 Identities=11% Similarity=0.010 Sum_probs=136.3
Q ss_pred ccccccccccc--CCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 370 RVKKADAVPTT--SGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 370 ~~~~~i~vPTt--~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
...|+|+|||| ++||||++..++++++.. |..+ .....|+.+|+||+++.++|++++++|++|+|.|++|+....
T Consensus 119 rgip~i~IPTTlla~tdS~v~~kt~I~~~~~--Kn~i-g~~~~P~~viiD~~~l~tlP~~~~~aG~~d~lkha~i~d~~~ 195 (368)
T 2gru_A 119 RGIALIHVPTTFLAASDSVLSIKQAVNLTSG--KNLV-GFYYPPRFVFADTRILSESPPRQVKAGMCELVKNMLILENDN 195 (368)
T ss_dssp TCCEEEEEECSHHHHHTTTSSCEEEEEETTE--EEEE-EEECCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHSCCSC
T ss_pred CCCCEEEECCchHhhcCCCcCCeEEEECCCc--eeEe-ecCCCCCEEEEchHHHcCCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 35799999998 699999999999999753 4433 244579999999999999999999999999999999862210
Q ss_pred CCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhH-hhhcccchhhhhhh
Q psy2427 448 PYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGV-GFGNAGVHLCHGLS 526 (660)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~-~~~~~g~~~~H~l~ 526 (660)
.+.+ .. ....+.. ...+.+.+.+.+.+.. .+ ..+..+.+.+|+ ++.|.|.+++|+++
T Consensus 196 ----~~~l-----~~----~~~~l~~----~~~~~l~~~i~~~~~~----k~-~~v~~d~~e~G~r~~ln~Ght~~Haie 253 (368)
T 2gru_A 196 ----KEFT-----ED----DLNSANV----YSPKQLETFINFCISA----KM-SVLSEDIYEKKKGLIFEYGHTIGHAIE 253 (368)
T ss_dssp ----CSCC-----GG----GCCTTCC----CCHHHHHHHHHHHHHH----HH-HHHTTCTTSSSGGGGGGTTHHHHHHHH
T ss_pred ----HHHH-----Hh----hHHHHHh----hcHHHHHHHHHHHHHH----HH-HHhccCchhhCchhhhcchhHHHHHHH
Confidence 0000 00 0001100 0011122222222210 00 112233466888 69999999999999
Q ss_pred ccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy2427 527 YPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQ 606 (660)
Q Consensus 527 ~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~ 606 (660)
|.++ | +++||+++++.+|.++ ++++.+|.. +. ..++++++|+++
T Consensus 254 ~~~~--~-------------~~~HGeavAigm~~~~------------~la~~~g~~----~~-----~~~~~i~~ll~~ 297 (368)
T 2gru_A 254 LAEQ--G-------------GITHGEAIAVGMIYAA------------KIANRMNLM----PE-----HDVSAHYWLLNK 297 (368)
T ss_dssp HHTT--T-------------SSCHHHHHHHHHHHHH------------HHHHHTTSS----CH-----HHHHHHHHHHHH
T ss_pred HccC--C-------------CCChHHHHHHHHHHHH------------HHHHHhCCC----CH-----HHHHHHHHHHHH
Confidence 9886 2 6999999999998765 366667743 11 236899999999
Q ss_pred cCCCCcccccCCCCCcHHHHHHh
Q psy2427 607 MKIENGLKVLGYTSADIPALVTG 629 (660)
Q Consensus 607 lglp~~L~elGi~~~~i~~ia~~ 629 (660)
+|+|+++++ |++++++.+..+.
T Consensus 298 ~glP~~l~~-~i~~~~~~~~~~~ 319 (368)
T 2gru_A 298 IGALQDIPL-KSDPDSIFHYLIH 319 (368)
T ss_dssp TTTTTSCCC-CCCHHHHHHHHHT
T ss_pred cCCCCCCcC-CCCHHHHHHHHHH
Confidence 999999999 9988876555444
|
| >1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-19 Score=190.73 Aligned_cols=217 Identities=17% Similarity=0.146 Sum_probs=139.9
Q ss_pred cccccccccccCCC-CCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH---HHHh
Q psy2427 370 RVKKADAVPTTSGT-GSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL---ESFT 445 (660)
Q Consensus 370 ~~~~~i~vPTt~~t-gse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~---E~~~ 445 (660)
...|+|+||||+++ +|+++...+++.+.. +.+......|+.+|+||+++.++|++++++|++|+|.|++ |+|+
T Consensus 115 rgip~i~IPTT~~a~ds~vg~K~~i~~~~~---kn~~g~~~~P~~viiDp~~l~tlP~~~~~aG~~d~lkha~i~De~~~ 191 (354)
T 1xah_A 115 RGVHFIQVPTTILAHDSSVGGKVGINSKQG---KNLIGAFYRPTAVIYDLDFLKTLPFKQILSGYAEVYKHALLNGESAT 191 (354)
T ss_dssp TCCEEEEEECSTTHHHHTSSCEEEECCSSS---TTCEEEECCCSEEEEEGGGGGGCCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cCCCEEEECCcccccccccCceEEEEcCCc---eeeeecCCCCcEEEEcHHHHhhCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 46799999999866 588887777776532 2334445789999999999999999999999999999999 8998
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCchH--HHH-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccchhh
Q psy2427 446 ALPYTERTPCPTDPLLRPAYQGQNPVS--DVW-ARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLC 522 (660)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~~~ 522 (660)
+. ..++++ +.+ +. +.+.+++++++.++.+..+|..+.. ++.++.|.|
T Consensus 192 ~~-------------------~~~~~~~~~~~~a~---~~l~~~l~~~~~~~~~~~~~d~~e~----g~r~~l~~g---- 241 (354)
T 1xah_A 192 QD-------------------IEQHFKDREILQSL---NGMDKYIAKGIETKLDIVVADEKEQ----GVRKFLNLG---- 241 (354)
T ss_dssp HH-------------------HHHHSCSHHHHHHT---TTHHHHHHHHHHHHHHHHHHSTTSS----SGGGGGGTT----
T ss_pred HH-------------------HHhhhhhhhhhhHH---HHHHHHHHHHHHHHHHHhccCchhh----CCccccccH----
Confidence 84 344555 655 54 6778888888776666655433222 445555555
Q ss_pred hhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 523 HGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRG 602 (660)
Q Consensus 523 H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~ 602 (660)
|.++|.|+ .| ++++||+++|+.+|.+ .++++.+|. .. . .++++++
T Consensus 242 Ht~~Hale-~~------------~~~~HG~avaig~~~~------------~~la~~~g~-~~--~-------~~~~i~~ 286 (354)
T 1xah_A 242 HTFGHAVE-YY------------HKIPHGHAVMVGIIYQ------------FIVANALFD-SK--H-------DISHYIQ 286 (354)
T ss_dssp THHHHHHH-HH------------HCCCHHHHHHHHHHHH------------HHHHHHHTC-CC--C-------CHHHHHH
T ss_pred HHHHHHHh-cC------------CCCCcHHHHHHHHHHH------------HHHHHHhCC-CH--H-------HHHHHHH
Confidence 55555444 32 1599999999999976 356677776 21 1 2588999
Q ss_pred HHHHcCCCCcccc-cCCCCCcHHHHHHhhcc-CCCCCCCCC--------ccCCHHHHHHHHHH
Q psy2427 603 YMDQMKIENGLKV-LGYTSADIPALVTGTLP-QHRITKLAP--------REQSEEDLANLFEN 655 (660)
Q Consensus 603 l~~~lglp~~L~e-lGi~~~~i~~ia~~a~~-~~~~~~~~P--------~~~t~e~i~~il~~ 655 (660)
|++++|+|++|++ ++. ++.++.+...-.. .....-.-| ..++++++.+.++.
T Consensus 287 l~~~~glP~~l~~~l~~-~~~~~~~~~dkk~~~~~~~~~l~~~iG~~~~~~~~~~~l~~~~~~ 348 (354)
T 1xah_A 287 YLIQLGYPLDMITDLDF-ETLYQYMLSDKKNDKQGVQMVLMRQFGDIVVQHVDQLTLQHACEQ 348 (354)
T ss_dssp HHHHHTCCCC------------------------CBCCEEEEETTEEEECCBCHHHHHHHHHH
T ss_pred HHHHcCcCCCCCCCCCH-HHHHHHHHHhHhhcCCCEEEEEEcccCcEEEecCCHHHHHHHHHH
Confidence 9999999999996 543 2334444322111 111000001 13789999888876
|
| >1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-20 Score=198.40 Aligned_cols=192 Identities=16% Similarity=0.098 Sum_probs=133.3
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcch--------------h
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGF--------------D 435 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~--------------D 435 (660)
...|+|+||||++|++|. +.++++..+.+.|+.+......|+.+|+||+++.++|++++++|.. |
T Consensus 130 rgip~i~IPTTlla~~da-svg~kt~i~~~~~kn~~g~~~~P~~viiD~~~l~tlP~~~~~sG~aE~iK~~~i~d~~~~~ 208 (393)
T 1sg6_A 130 RGVRYVQVPTTLLAMVDS-SIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFT 208 (393)
T ss_dssp GCCEEEEEECSHHHHHTT-TSSCEEEEEETTEEEEEEEECCCSEEEEEGGGGGTSCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCEEEECCchhhhhhc-CcceEEeecCCCcccccccccCCcEEEEchHHHccCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 457999999999999998 5676666555666667777788999999999999999999996663 6
Q ss_pred hHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhh
Q psy2427 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFG 515 (660)
Q Consensus 436 al~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~ 515 (660)
+|.|++|+|++. ..+|+++.+ .+++.+.+.++.++.++.+..++. +......+|+ .
T Consensus 209 ~l~~~~e~~~~~-------------------~~~~~~d~~--~a~~~i~~~l~~~i~~~~~~k~~~-v~~d~~e~G~--~ 264 (393)
T 1sg6_A 209 ALEENAETILKA-------------------VRREVTPGE--HRFEGTEEILKARILASARHKAYV-VSADEREGGL--R 264 (393)
T ss_dssp HHHHHHHHHHHH-------------------HHCCCCTTS--CTTGGGHHHHHHHHHHHHHHHHHH-HHC-----CG--G
T ss_pred HHHHhHHHHHhh-------------------ccccccchh--hhHHHHHHHHHHHHHHHHHHHHHH-hCcChhhhcc--h
Confidence 667778888774 233333332 233333444444444333333332 2233444565 2
Q ss_pred cccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHH
Q psy2427 516 NAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKL 595 (660)
Q Consensus 516 ~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~ 595 (660)
+ +++..|.++|.|+..+ .++++||+++++.++. +.++++.+|... . .
T Consensus 265 ~-~l~~gHt~~Hale~~~-----------~~~~~HGeavAigm~~------------~~~la~~~g~~~----~-----~ 311 (393)
T 1sg6_A 265 N-LLNWGHSIGHAIEAIL-----------TPQILHGECVAIGMVK------------EAELARHLGILK----G-----V 311 (393)
T ss_dssp G-GGGTTHHHHHHHHHHH-----------TTTSCHHHHHHHHHHH------------HHHHHHHTTCSC----H-----H
T ss_pred h-hhChHHHHHHHHHHcC-----------CCCCCcHHHHHHHHHH------------HHHHHHHhCCCC----H-----H
Confidence 3 6778999999999864 1269999999988743 466777887531 1 2
Q ss_pred HHHHHHHHHHHcCCCCcccccCCC
Q psy2427 596 LADTVRGYMDQMKIENGLKVLGYT 619 (660)
Q Consensus 596 ~~~~l~~l~~~lglp~~L~elGi~ 619 (660)
.++++++|++++|+|++|+++|++
T Consensus 312 ~~~~i~~ll~~~glP~~l~~~gi~ 335 (393)
T 1sg6_A 312 AVSRIVKCLAAYGLPTSLKDARIR 335 (393)
T ss_dssp HHHHHHHHHHHTTCCCSTTCHHHH
T ss_pred HHHHHHHHHHHcCCCccchhhccc
Confidence 478999999999999999999873
|
| >3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=178.87 Aligned_cols=93 Identities=22% Similarity=0.275 Sum_probs=87.7
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCC
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~ 449 (660)
+.+|+|+||||++||||+|+.+|+++++. |..+.++.++|+++|+||+++.++|++++++|++|||+||+|+|++.
T Consensus 150 ~~~P~i~IPTTagtgSevt~~avit~~~~--K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aa~g~Dal~HaiEay~s~-- 225 (375)
T 3rf7_A 150 PAVHHIGIPTVSGTGAEASRTAVLCGPVR--KLGLNSDYTVFDQIIMDSELIAGVPTDQWFYTGMDCFIHCVESLQGT-- 225 (375)
T ss_dssp CCCCEEEEESSCSSCTTTCSCCEEECSSC--EEEEESGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHHHST--
T ss_pred CCCCEEEEcCCCccchhhCCeEEEEeCCC--eEEecccccCCCEEEEcHHHHcCCCHHHHHHHHHHHHHHHHHHHhcc--
Confidence 46799999999999999999999998854 88899999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCCCCCcccccCCCchHHHHHHHHHHHH
Q psy2427 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 483 (660)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i 483 (660)
..+|++|.+|+++++++
T Consensus 226 -----------------~~~~~sd~~a~~ai~li 242 (375)
T 3rf7_A 226 -----------------YLNEFAKAFAEKSMDLC 242 (375)
T ss_dssp -----------------TCCHHHHHHHHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHH
Confidence 78999999999999887
|
| >3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-17 Score=173.54 Aligned_cols=190 Identities=14% Similarity=0.109 Sum_probs=118.8
Q ss_pred ccccccccccc--CCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH---HHH
Q psy2427 370 RVKKADAVPTT--SGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL---ESF 444 (660)
Q Consensus 370 ~~~~~i~vPTt--~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~---E~~ 444 (660)
...|+|+|||| ++++|.++....++.+ +.|..+ .....|+.+|+||+++.++|++++++|++|+|.|++ |.|
T Consensus 110 rgip~i~IPTTlla~vDasvg~k~~v~~~--~~Kn~i-g~~~~P~~vi~D~~~l~tlP~~~~~ag~~d~lkh~~i~d~~~ 186 (343)
T 3clh_A 110 RGIDFINIPTTLLAQVDASVGGKTGINTP--YGKNLI-GSFHQPKAVYMDLAFLKTLEKREFQAGVAEIIKMAVCFDKNL 186 (343)
T ss_dssp TCCEEEEEECSHHHHHTTSSSCEEEEEET--TEEEEE-EEECCCSEEEECTTSGGGSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cCCCEEEeCCchhhccccccCCeEEEECc--cccccc-ccCCCCCEEEEcHHHHhcCCHHHHHhHHHHHHHHHHHcCHHH
Confidence 46799999999 5666777776555554 456655 566789999999999999999999999999999999 777
Q ss_pred hcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhHhhhcccchhhh
Q psy2427 445 TALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAV-YNQDDLEARSHMHLASAMAGVGFGNAGVHLCH 523 (660)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~-~~~~~~~ar~~~~~as~~ag~~~~~~g~~~~H 523 (660)
++.. ..+++++. +++.++...+.....+ .|+.+..+|..+ | ..|
T Consensus 187 ~~~l------------------~~~~~~~~-~~~~i~~~~~~k~~vv~~d~~e~g~r~~l------------n----~gH 231 (343)
T 3clh_A 187 VERL------------------ETKDLKDC-LEEVIFQSVNIKAQVVVQDEKEQNIRAGL------------N----YGH 231 (343)
T ss_dssp HHHH------------------HHSCTTTS-HHHHHHHHHHHHHHHC---------CTTT------------T----TTH
T ss_pred HHHH------------------HhCcCCHH-HHHHHHHHHHHHHHHhccCchhhhHHHHH------------h----hHH
Confidence 6631 11123333 4555555555544443 345444444322 2 346
Q ss_pred hhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Q psy2427 524 GLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGY 603 (660)
Q Consensus 524 ~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l 603 (660)
.++|.|+... .| ++++||+++++.+|.+++ +++.+|.. +. ..++++++|
T Consensus 232 t~~Hale~~~------~~----~~~~HGeavAig~~~~~~------------la~~~g~~----~~-----~~~~~i~~l 280 (343)
T 3clh_A 232 TFGHAIEKET------DY----ERFLHGEAIAIGMRMAND------------LALSLGML----TL-----KEYERIENL 280 (343)
T ss_dssp HHHHHHHHHT------TT----SSCCHHHHHHHHHHHHHH------------HHHHHTSS----CH-----HHHHHHHHH
T ss_pred HHHHHHHhhc------CC----CCCChHHHHHHHHHHHHH------------HHHHhCCC----CH-----HHHHHHHHH
Confidence 6666666541 12 269999999999998763 45666642 11 236899999
Q ss_pred HHHcCCCCcccccCCCCCcHHHHHHhh
Q psy2427 604 MDQMKIENGLKVLGYTSADIPALVTGT 630 (660)
Q Consensus 604 ~~~lglp~~L~elGi~~~~i~~ia~~a 630 (660)
++++|+|++|+++ +.+++.+..+..
T Consensus 281 l~~~glP~~l~~~--~~~~~~~~~~~d 305 (343)
T 3clh_A 281 LKKFDLIFHYKIL--DLQKFYERLFLD 305 (343)
T ss_dssp HHHTTCCCCCC----------------
T ss_pred HHHcCCCCCCCcC--CHHHHHHHHHHh
Confidence 9999999999987 556665555443
|
| >3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-15 Score=159.05 Aligned_cols=100 Identities=23% Similarity=0.384 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCc
Q psy2427 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPH 334 (660)
Q Consensus 255 ~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~H 334 (660)
++|.+++++++++.++++++++|++|.++|++|++|++++|++++++|+|+.|+|+|.|++.++ ++|
T Consensus 191 ~td~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m~~as~laG~a~~~~g~g~~Hai~h~lg~~~~-------------i~H 257 (358)
T 3jzd_A 191 VMSLMAEEGIRALAAGIPAVFNDPADLDARSQCLYGAWLCGTVLGGVGMALHHKLCHTLGGSFN-------------LPH 257 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHC-------------CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhcccC-------------Cch
Confidence 5799999999999999999999999999999999999999999999999999999999998764 999
Q ss_pred hhHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 335 GLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 335 G~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
|+++|+++|++++|+.+..++|+.++++.+|.+
T Consensus 258 G~~~aillp~v~~~~~~~~~~~~~~~a~~lg~~ 290 (358)
T 3jzd_A 258 AETHTIVLPHALAYNAAAVPEAMARIRRATGAG 290 (358)
T ss_dssp HHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTCT
T ss_pred hHhHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999864
|
| >3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-15 Score=158.42 Aligned_cols=158 Identities=23% Similarity=0.337 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCc
Q psy2427 255 VSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPH 334 (660)
Q Consensus 255 ~s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~H 334 (660)
++|.+++++++++.++++++++|++|.++|++|++|++++|++++++|++..|+|+|.|++.++ ++|
T Consensus 190 ~td~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m~~As~laG~a~~~~g~g~~Hai~h~lg~~~~-------------i~H 256 (364)
T 3iv7_A 190 INAVLAAEGIRALNQGLPKIVANPHSIEGRDEALYGAYLAAVSFASAGSGLHHKICHTLGGTFN-------------LPH 256 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTSC-------------CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhHHhhccCchHHHHHHhHhhhccC-------------CcH
Confidence 5799999999999999999999999999999999999999999999999999999999998753 999
Q ss_pred hhHHHhhHHHHHHhhhcCCchhhhhHhhhhccccc-----cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCC
Q psy2427 335 GLSVVMSAPAVFNFTAASSPERHIEAAELLGADVS-----RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRAL 409 (660)
Q Consensus 335 G~avai~l~~~l~~~~~~~~er~~~la~~lg~~~~-----~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~ 409 (660)
|+++|+++|++++|+.+..++|+.++++.+|.+.. +....+-+||+.+ |. . ++.+ . .+.+
T Consensus 257 G~~~aillp~v~~~~~~~~~~~~~~~a~~lg~~~~~~~i~~l~~~lglP~~L~---e~---G-i~~~--~------i~~~ 321 (364)
T 3iv7_A 257 AQTHATVLPYVLAFNAGDAPEAERRAAAAFGTDTALEGLQRLRLSVNAPKRLS---DY---G-FEAS--G------IAEA 321 (364)
T ss_dssp HHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTSSSHHHHHHHHHHHTTCCCCGG---GG---T-CCGG--G------HHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHcCCCCcHH---Hc---C-CCHH--H------HHHH
Confidence 99999999999999999999999999999887421 2334567787653 11 0 0111 0 0011
Q ss_pred CccccccccccccCCCchhhhhcchhhHHHHHHH
Q psy2427 410 KPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES 443 (660)
Q Consensus 410 ~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~ 443 (660)
.+.+. + ..+.+.|..++..-..+.+-.++++
T Consensus 322 -a~~a~-~-~~~~~np~~~t~~di~~il~~a~~g 352 (364)
T 3iv7_A 322 -VDVTL-E-KVPANNPRPVTRENLSRLLEAALNG 352 (364)
T ss_dssp -HHHHH-T-TSCTTCSSCCCHHHHHHHHHHHHHT
T ss_pred -HHHHH-h-hcccCCCCCCCHHHHHHHHHHHhcC
Confidence 12222 2 3567889988887777777666654
|
| >3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.3e-15 Score=156.16 Aligned_cols=99 Identities=19% Similarity=0.335 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
+|.+++++++++.++++++++|++|.++|++|++|++++|++++++|++..|+|+|.|++.++ ++||
T Consensus 190 td~~a~~ai~~i~~~l~~a~~~~~d~~aR~~m~~as~laG~a~~~~g~g~~H~i~h~l~~~~~-------------i~HG 256 (353)
T 3hl0_A 190 ASMMAVEGLRAMIEALPVVRQAPHDIGARETALYGAWLCGTVLGAVGMSLHHKLCHTLGGSLD-------------LPHA 256 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHC-------------CCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhccCcHHHHHHhhHhhhccC-------------CCHH
Confidence 478999999999999999999999999999999999999999999999999999999998754 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
+++|+++|++++|+.+..++|+.++++.+|.+
T Consensus 257 ~~~ai~lp~v~~~~~~~~~~~~~~~a~~lg~~ 288 (353)
T 3hl0_A 257 ETHAVLLPHTIAYVEEAAPNLLAPLAALVGGR 288 (353)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHcCcH
Confidence 99999999999999999999999999988864
|
| >1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-14 Score=151.60 Aligned_cols=172 Identities=16% Similarity=0.082 Sum_probs=109.5
Q ss_pred cccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHH---HH
Q psy2427 370 RVKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALE---SF 444 (660)
Q Consensus 370 ~~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E---~~ 444 (660)
...|+|+||||+ .++|.+.....++.+. .|. +......|+.+|+||+++.++|++++++|++|++.|+++ .|
T Consensus 109 rgip~i~IPTTlla~vds~~g~k~~i~~~~--~kn-~ig~~~~P~~vi~D~~~l~tlP~~~~~aG~~d~lkh~~i~d~~~ 185 (348)
T 1ujn_A 109 RGVAYLAFPTTTLAIVDASVGGKTGINLPE--GKN-LVGAFHFPQGVYAELRALKTLPLPTFKEGLVEAFKHGLIAGDEA 185 (348)
T ss_dssp TCCEEEEEECSHHHHHTTTSSCEEEEEETT--EEE-EEEEECCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHHTCGG
T ss_pred cCCCEEEecCcHHHhhccccCceEEEecCC--cce-eeccCcCCCEEEECHHHHhhCCHHHHHhHHHHHHHHHHHcCHHH
Confidence 457999999995 3456666666666652 233 334456799999999999999999999999999999996 45
Q ss_pred h---cCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccch
Q psy2427 445 T---ALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQY-FKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVH 520 (660)
Q Consensus 445 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~-l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~ 520 (660)
+ +.. ..++ +.+ .+.++...+. ......|+.+... ...++
T Consensus 186 ~~~~~~l------------------~~~~--~~l-~~~i~~~~~~k~~~v~~d~~e~g~----------------r~~ln 228 (348)
T 1ujn_A 186 LLKVEDL------------------TPQS--PRL-EAFLARAVAVKVRVTEEDPLEKGK----------------RRLLN 228 (348)
T ss_dssp GGCCTTC------------------CTTC--TTH-HHHHHHHHHHHHHHHHHCTTSSSG----------------GGGGG
T ss_pred hcchHHH------------------HhhH--HHH-HHHHHHHHHHHHHHhhcCchhhch----------------hhHhc
Confidence 5 310 1122 222 2222222221 1222234332211 12233
Q ss_pred hhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Q psy2427 521 LCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTV 600 (660)
Q Consensus 521 ~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l 600 (660)
..|.++|.|...+ .| +++||+++++.++.. .++++.+| +.+ .++++
T Consensus 229 ~GHt~~Hale~~~------~~-----~~~HGeavAig~~~~------------~~la~~~g-~~~----------~~~~i 274 (348)
T 1ujn_A 229 LGHTLGHALEAQT------RH-----ALPHGMAVAYGLLYA------------ALLGRALG-GED----------LLPPV 274 (348)
T ss_dssp TTHHHHHHHHHHT------TT-----CSCHHHHHHHHHHHH------------HHHHHHTT-CCC----------CHHHH
T ss_pred chHHHHHHHHhcc------CC-----CCChHHHHHHHHHHH------------HHHHHHhC-CHH----------HHHHH
Confidence 4566666665531 12 699999999888643 45677777 211 26889
Q ss_pred HHHHHHcCCCCccccc
Q psy2427 601 RGYMDQMKIENGLKVL 616 (660)
Q Consensus 601 ~~l~~~lglp~~L~el 616 (660)
++|++++| |++|+++
T Consensus 275 ~~ll~~~g-P~~l~~~ 289 (348)
T 1ujn_A 275 RRLLLWLS-PPPLPPL 289 (348)
T ss_dssp HHHHHHHC-CCCCCCC
T ss_pred HHHHHHhC-CCCCCcC
Confidence 99999999 9999874
|
| >3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-14 Score=155.44 Aligned_cols=99 Identities=28% Similarity=0.437 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCch
Q psy2427 256 SDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 335 (660)
Q Consensus 256 s~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG 335 (660)
+|.+++++++++.++++++++|++|.++|++|++|++++|+++.++|++.+|+|+|.|++.++ ++||
T Consensus 212 td~~a~~ai~~i~~~l~~a~~~~~d~~ar~~m~~as~laG~a~~~~g~g~~Hai~h~l~~~~~-------------i~HG 278 (383)
T 3ox4_A 212 TDACALKAASMIAKNLKTACDNGKDMPAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGYYN-------------LPHG 278 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSC-------------CCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcccchhHHHhhhHHhcCcC-------------CChH
Confidence 478999999999999999999999999999999999999999999999999999999998653 9999
Q ss_pred hHHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 336 LSVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 336 ~avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
+++|+++|++++|+.+..++|+.++++.+|.+
T Consensus 279 ~~~ai~lp~v~~~~~~~~~~~~~~la~~~g~~ 310 (383)
T 3ox4_A 279 VCNAVLLPHVLAYNASVVAGRLKDVGVAMGLD 310 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999864
|
| >1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-14 Score=152.10 Aligned_cols=76 Identities=25% Similarity=0.422 Sum_probs=72.2
Q ss_pred ccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH
Q psy2427 369 SRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF 444 (660)
Q Consensus 369 ~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~ 444 (660)
...+|+|+||||++||||+|+.+|+++++.+.|..+.++.++|+.+|+||+++.++|++++++|++|||+|++|+|
T Consensus 149 ~~~~p~i~IPTTagtgSevt~~avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~tlP~~~~aag~~Dal~haiEa~ 224 (408)
T 1oj7_A 149 KSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQY 224 (408)
T ss_dssp CCCCCEEEEESSCSSCGGGSSEEEEEETTTTEEEEEECGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchhHHhCCCEEEEECCCCeEEEeeCCCcCccEEEECchhhcCCCHHHHHhHHHHHHHHHHHHH
Confidence 3568999999999999999999999999889999998888999999999999999999999999999999999965
|
| >1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-14 Score=151.75 Aligned_cols=78 Identities=32% Similarity=0.507 Sum_probs=74.5
Q ss_pred ccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhc
Q psy2427 369 SRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTA 446 (660)
Q Consensus 369 ~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~ 446 (660)
...+|+|+||||++||||+|+.+|+++++.+.|..+.++.++|+.+|+||+++.++|++++++|++|||+|++|+|++
T Consensus 141 ~~~~p~i~IPTTagtgSevt~~avi~~~~~~~K~~i~~~~~~P~~ai~Dp~l~~tlP~~~~aag~~Dal~haiE~~~s 218 (407)
T 1vlj_A 141 EKALPIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFD 218 (407)
T ss_dssp CCCCCEEEEECSCSSCGGGSSEEEEEETTTTEEEEEECGGGSCSEEEECGGGGGGSCHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCEEEEeCCCCcchhhcCeEEEEECCCCeEEEecCCCccceEEEEChHHhcCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 356899999999999999999999999988899999888899999999999999999999999999999999999999
|
| >1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-13 Score=148.43 Aligned_cols=79 Identities=25% Similarity=0.294 Sum_probs=75.1
Q ss_pred ccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 369 SRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 369 ~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
...+|+|+||||++||||+|+.+|+++++.+.|..+.++.++|+.+|+||+++.++|++++++|++|+|+|++|+|++.
T Consensus 130 ~~~~p~i~IPTT~gtgSevt~~avi~~~~~~~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~E~~~s~ 208 (386)
T 1rrm_A 130 KPSVPILAIPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYITR 208 (386)
T ss_dssp SCCSCEEEEECSSSCCTTTCSEEEEEETTTTEEEEEECGGGCCSEEEECGGGTTTSCHHHHHHHHHHHHHHHHHHHHST
T ss_pred CCCCCEEEEeCCCCchhhhCCcEEEEeCCCCeeEeecCCccccCEEEEChhhhcCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3467999999999999999999999999888899999889999999999999999999999999999999999999995
|
| >3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-13 Score=147.29 Aligned_cols=98 Identities=31% Similarity=0.508 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
+.+++++++++.++++++++|+.|.++|++|++|++++|+++.|+|++++|+|+|+|++.++ ++||+
T Consensus 217 d~~a~~ai~~i~~~l~~~v~d~~d~~ar~~~~~as~laG~a~~~~g~~~~Hai~h~l~~~~~-------------i~HG~ 283 (387)
T 3bfj_A 217 DAAAMQAIRLIARNLRQAVALGSNLQAREYMAYASLLAGMAFNNANLGYVHAMAHQLGGLYD-------------MPHGV 283 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------------CCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHccCcHHHHHhhhHHhcCcC-------------CChHH
Confidence 35778999999999999999999999999999999999999999999999999999987643 99999
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGAD 367 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~ 367 (660)
+||++||++++|+.+..++|+.++++.+|..
T Consensus 284 avai~lp~v~~~~~~~~~~~~~~la~~lg~~ 314 (387)
T 3bfj_A 284 ANAVLLPHVARYNLIANPEKFADIAELMGEN 314 (387)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhCCC
Confidence 9999999999999999999999999988753
|
| >3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-13 Score=147.06 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=71.3
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
.+|+|+||||++||||+|+.+|+++++.+.|..+..+. .|+.+|+||+++.++|++++++|++|||+|++|+|++.
T Consensus 130 ~~p~i~IPTTagtgSevt~~avi~~~~~~~k~~~~~~~-~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~Eay~s~ 205 (387)
T 3uhj_A 130 GARIVIAPTIASTDAPCSAIAVRYTEHGVYEEALRLPR-NPDAVVVDSALVAAAPARFLVAGIGDALSTWFEARSNI 205 (387)
T ss_dssp TCEEEECCSSCCCSTTTSSEEEEECTTSCEEEEEECSC-CCSEEEECHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCcccCCcccCCeEEEEcCCCceEeeeecCC-CCeEEEEChHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999998888888887764 79999999999999999999999999999999999996
|
| >1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-13 Score=145.52 Aligned_cols=92 Identities=34% Similarity=0.491 Sum_probs=85.1
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCC
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~ 449 (660)
..+|+|+||||+|||||+|+++|++ ++.+.|..+. .++|+.+|+||+++.++|++++++|++|+|+|++|+|++.
T Consensus 139 ~~~p~i~IPTTagtgse~t~~avi~-~~~g~K~~i~--~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~E~~~s~-- 213 (371)
T 1o2d_A 139 HWLPVVEIPTTAGTGSEVTPYSILT-DPEGNKRGCT--LMFPVYAFLDPRYTYSMSDELTLSTGVDALSHAVEGYLSR-- 213 (371)
T ss_dssp CCCCEEEEECSSCCCGGGCCEEEEE-CTTSCEEEEE--CCCCSEEEECGGGGGGCCHHHHHHHHHHHHHHHHHHHHST--
T ss_pred CCCeEEEEeCCCchhhhhcCceEEE-cCCCeeEeee--cccCCEEEECchhhcCCCHHHHHHHHHHHHHHHHHHHhcC--
Confidence 5689999999999999999999999 6678898888 7889999999999999999999999999999999999996
Q ss_pred CCCCCCCCCCCCcccccCCCchHHHHHHHHHHHH
Q psy2427 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 483 (660)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i 483 (660)
..+|+++.+|+++++++
T Consensus 214 -----------------~~~~~~d~~a~~a~~li 230 (371)
T 1o2d_A 214 -----------------KSTPPSDALAIEAMKII 230 (371)
T ss_dssp -----------------TCCHHHHHHHHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHH
Confidence 67899999999877764
|
| >1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-13 Score=143.62 Aligned_cols=76 Identities=18% Similarity=0.110 Sum_probs=70.8
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
.+|+|+||||++||||+|+.+|+++++.+.|.....+ .+|+.+|+||+++.++|++++++|++|+|+|++|+|++.
T Consensus 118 ~~p~i~IPTTa~tgSevt~~avi~~~~~~~k~~~~~~-~~P~~viiDp~l~~tlP~~~~aag~~Dal~h~~E~~~s~ 193 (376)
T 1kq3_A 118 KKPVVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLP-RNPDVVLVDTEIVAKAPARFLVAGMGDALATWFEAESCK 193 (376)
T ss_dssp TCCEEEEESSCCCSCTTSSEEEEECTTSCEEEEEECS-SCCSEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCccccCcccCCeEEEEeCCCCeEeeccCC-CCCcEEEEchHHHhhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999999999887778777765 789999999999999999999999999999999999984
|
| >1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.5e-13 Score=142.48 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=71.2
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
.+|+|+||||++||||+|+.+|+++++.+.|....++ ..|+.+|+||+++.++|++++++|++|+|+|++|+|++.
T Consensus 110 ~~p~i~IPTTa~tgSevt~~avi~~~~~~~k~~~~~~-~~P~~viiDp~ll~tlP~~~~a~g~~Dal~h~~E~~~~~ 185 (370)
T 1jq5_A 110 DAYIVIVPTAASTDAPTSALSVIYSDDGVFESYRFYK-KNPDLVLVDTKIIANAPPRLLASGIADALATWVEARSVI 185 (370)
T ss_dssp TCEEEEEESSCCSSCTTCSEEEEECTTSCEEEEEECS-SCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeccccCCCcccCCeEEEEcCCCceEeeccCC-CCCeEEEEChHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999999999887778888776 789999999999999999999999999999999999984
|
| >1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.1e-13 Score=144.24 Aligned_cols=76 Identities=18% Similarity=0.114 Sum_probs=67.9
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
.+|+|+||||++||||+|+.+|+++++.+.|....++ ..|+.+|+||+++.++|++++++|++|+|+|++|+|++.
T Consensus 169 giP~I~IPTTAgtgSevt~~avI~~~~~~~k~~~~~~-~~P~~viiDp~ll~tlP~~~~aag~~DaL~h~~E~~~s~ 244 (450)
T 1ta9_A 169 NLPSIICPTTASSDAATSSLSVIYTPDGQFQKYSFYP-LNPNLIFIDTDVIVRAPVRFLISGIGDALSTWVETESVI 244 (450)
T ss_dssp TCCEEEEESSCSCSCTTCSEEEEC----CCCEEEECS-SCCSEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccCcccCCceEEEeCCCceEEecccc-cCCcEEEEchHHHccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999887778887776 789999999999999999999999999999999999985
|
| >3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-11 Score=130.09 Aligned_cols=69 Identities=23% Similarity=0.157 Sum_probs=55.0
Q ss_pred cccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH
Q psy2427 370 RVKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 441 (660)
Q Consensus 370 ~~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~ 441 (660)
...|+|+||||+ .++|++.+...++.+..+...+. ...|+.+|+||+++.++|++++++|++|++.|++
T Consensus 148 rgip~I~IPTTlla~vDssvggkt~I~~~~~Kn~ig~---f~~P~~ViiD~~~l~tlP~r~~~aG~~D~lkha~ 218 (390)
T 3okf_A 148 RGVDFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMIGA---FYQPKAVVIDTDCLTTLPAREFAAGMAEVIKYGI 218 (390)
T ss_dssp TCCEEEEEECSHHHHHHTSSSCEEEEEETTEEEEEEE---ECCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCccccccCcCCeEEEEcCCCceEEee---ccCCCEEEEcHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 457999999994 56677777777777643332222 3479999999999999999999999999999988
|
| >3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.1e-11 Score=126.92 Aligned_cols=71 Identities=15% Similarity=0.075 Sum_probs=64.0
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHh
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFT 445 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~ 445 (660)
.+|+|+||||++||||+|..+|+++++. |..+ ....|+.+|+||+++.++|++++++|++|+|+|+.|.+-
T Consensus 112 ~~p~i~IPTT~~tgse~t~~avi~~~~~--K~~i--~~~~P~~vi~Dp~ll~tlP~~~~~~g~~Dal~h~~~~~d 182 (354)
T 3ce9_A 112 KLPFISVPTSTSNDGFSSPVASLLINGK--RTSV--PAKTPDGIVVDIDVIKGSPEKFIYSGIGDLVSNITALYD 182 (354)
T ss_dssp TCCEEEEESCCSSGGGTSSEEEEEETTE--EEEE--ECCCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCcccCCCCCCCceEEEeCCc--eeee--cCCCCcEEEEcHHHHHhCCHHHHHhhHHHHHHHHHHHHH
Confidence 4799999999999999999999998753 5555 468899999999999999999999999999999998763
|
| >3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.6e-09 Score=113.42 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=55.8
Q ss_pred cccccccccccCC--CCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHH
Q psy2427 370 RVKKADAVPTTSG--TGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHAL 441 (660)
Q Consensus 370 ~~~~~i~vPTt~~--tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~ 441 (660)
...|+|+||||++ ++|.++....++.+ ..|. +......|+.+|+||+++.++|++++++|..|++.|++
T Consensus 128 rgip~i~IPTTlla~vDssvggkt~V~~~--~~Kn-~ig~~~~P~~viiDp~~l~tlP~r~~~sG~ad~ik~~~ 198 (368)
T 3qbe_A 128 RGVSIVHLPTTLLGMVDAAVGGKTGINTD--AGKN-LVGAFHQPLAVLVDLATLQTLPRDEMICGMAEVVKAGF 198 (368)
T ss_dssp GCCEEEEEECSHHHHHTTTSSCEEEEEET--TEEE-EEEEECCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEECCCCccccccCcCceEEEECC--CCce-eeccccCCCEEEEcHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 3579999999976 78888876555543 2343 44455679999999999999999999999999999876
|
| >1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0066 Score=56.62 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchh
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSV 119 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 119 (660)
+|.+.+... .++.||++.... ....++....|++-|+.+.+ .-...|-+.+.+.+..+.+++.++++||++-|++.
T Consensus 13 ~l~~~~~~~--~~V~IimGS~SD-~~v~~~a~~~L~~~Gi~~dv-~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa 88 (182)
T 1u11_A 13 ALEDKAASA--PVVGIIMGSQSD-WETMRHADALLTELEIPHET-LIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAA 88 (182)
T ss_dssp -------CC--CSEEEEESSGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSC
T ss_pred HHHhhhcCC--CEEEEEECcHHH-HHHHHHHHHHHHHcCCCeEE-EEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchh
Confidence 444544443 378888887643 33568889999999999763 55678999999999999999999999999999865
Q ss_pred hhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 120 IDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 120 iD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
-+...++.... +|+|.|||..+
T Consensus 89 -~LpgvvA~~t~------------------------~PVIgVP~~~~ 110 (182)
T 1u11_A 89 -HLPGMCAAWTR------------------------LPVLGVPVESR 110 (182)
T ss_dssp -CHHHHHHHHCS------------------------SCEEEEEECCT
T ss_pred -hhHHHHHhccC------------------------CCEEEeeCCCC
Confidence 57777877664 89999999864
|
| >3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.011 Score=54.37 Aligned_cols=88 Identities=19% Similarity=0.288 Sum_probs=71.5
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
++.||++.... ....++....|++-|+.+.+ .-...|-+.+.+.+.++.+++.++++||++.|++. -+...++....
T Consensus 7 ~V~IimgS~SD-~~v~~~a~~~l~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~t~ 83 (166)
T 3oow_A 7 QVGVIMGSKSD-WSTMKECCDILDNLGIGYEC-EVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAA-HLPGMVAAKTT 83 (166)
T ss_dssp EEEEEESSGGG-HHHHHHHHHHHHHTTCEEEE-EECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSC-CHHHHHHHTCS
T ss_pred eEEEEECcHHh-HHHHHHHHHHHHHcCCCEEE-EEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcch-hhHHHHHhccC
Confidence 78888887642 33568899999999998763 45678999999999999999999999999999965 47777776554
Q ss_pred CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 132 ~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
+|+|.|||..+
T Consensus 84 ------------------------~PVIgVP~~~~ 94 (166)
T 3oow_A 84 ------------------------LPVLGVPVKSS 94 (166)
T ss_dssp ------------------------SCEEEEECCCT
T ss_pred ------------------------CCEEEeecCcC
Confidence 89999999764
|
| >3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0085 Score=54.99 Aligned_cols=89 Identities=16% Similarity=0.207 Sum_probs=72.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||++.... ....++....|++-|+.+.+ .-...|-+.+.+.+..+.+++.++++||++.|++. -+...++...
T Consensus 4 ~~V~Iimgs~SD-~~v~~~a~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t 80 (163)
T 3ors_A 4 MKVAVIMGSSSD-WKIMQESCNMLDYFEIPYEK-QVVSAHRTPKMMVQFASEARERGINIIIAGAGGAA-HLPGMVASLT 80 (163)
T ss_dssp CCEEEEESCGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSC-CHHHHHHHHC
T ss_pred CeEEEEECcHHH-HHHHHHHHHHHHHcCCCEEE-EEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchh-hhHHHHHhcc
Confidence 468888886642 33568888999999999764 55678999999999999999999999999999865 5777777766
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
. +|+|.|||..+
T Consensus 81 ~------------------------~PVIgVP~~~~ 92 (163)
T 3ors_A 81 T------------------------LPVIGVPIETK 92 (163)
T ss_dssp S------------------------SCEEEEEECCT
T ss_pred C------------------------CCEEEeeCCCC
Confidence 4 89999999765
|
| >3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0095 Score=55.20 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=72.7
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||++.... ....++....|++-|+.+.+ .-...|-+.+.+.+.++.+++.++++||++.|++. -+...+|...
T Consensus 8 ~~V~IimgS~SD-~~v~~~a~~~L~~~gi~~ev-~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t 84 (174)
T 3lp6_A 8 PRVGVIMGSDSD-WPVMADAAAALAEFDIPAEV-RVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAA-HLPGMVAAAT 84 (174)
T ss_dssp CSEEEEESCGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSC-CHHHHHHHHC
T ss_pred CeEEEEECcHHh-HHHHHHHHHHHHHcCCCEEE-EEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchh-hhHHHHHhcc
Confidence 478888887642 33568899999999998763 45678999999999999999999999999999865 5777777766
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
. +|+|.|||..+
T Consensus 85 ~------------------------~PVIgVP~~~~ 96 (174)
T 3lp6_A 85 P------------------------LPVIGVPVPLG 96 (174)
T ss_dssp S------------------------SCEEEEEECCS
T ss_pred C------------------------CCEEEeeCCCC
Confidence 4 89999999764
|
| >3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.012 Score=54.18 Aligned_cols=88 Identities=19% Similarity=0.309 Sum_probs=71.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||++.... ....++....|++-|+.+.+ .-...|-+.+.+.+.++.+++.++++||++.|++. -+...++...
T Consensus 7 ~~V~IimgS~SD-~~v~~~a~~~l~~~gi~~ev-~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t 83 (169)
T 3trh_A 7 IFVAILMGSDSD-LSTMETAFTELKSLGIPFEA-HILSAHRTPKETVEFVENADNRGCAVFIAAAGLAA-HLAGTIAAHT 83 (169)
T ss_dssp CEEEEEESCGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSC-CHHHHHHHTC
T ss_pred CcEEEEECcHHh-HHHHHHHHHHHHHcCCCEEE-EEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhh-hhHHHHHhcC
Confidence 478888887642 33568899999999998764 45678999999999999999999999999999965 4777777655
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
. +|+|.|||..
T Consensus 84 ~------------------------~PVIgVP~~~ 94 (169)
T 3trh_A 84 L------------------------KPVIGVPMAG 94 (169)
T ss_dssp S------------------------SCEEEEECCC
T ss_pred C------------------------CCEEEeecCC
Confidence 4 8999999974
|
| >3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.012 Score=54.49 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=71.3
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||++.... ....++....|++-|+.+.+ .-...|-+.+.+.+.++.+++.++++||++.|++. -+...++...
T Consensus 13 ~~V~IimGS~SD-~~v~~~a~~~L~~~Gi~~ev-~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t 89 (174)
T 3kuu_A 13 VKIAIVMGSKSD-WATMQFAADVLTTLNVPFHV-EVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAA-HLPGMLAAKT 89 (174)
T ss_dssp CCEEEEESSGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSC-CHHHHHHHTC
T ss_pred CcEEEEECcHHH-HHHHHHHHHHHHHcCCCEEE-EEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhh-hhHHHHHhcc
Confidence 368888887642 33558888999999998763 45678999999999999999999999999999865 4777777655
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
. +|+|.|||..
T Consensus 90 ~------------------------~PVIgVP~~~ 100 (174)
T 3kuu_A 90 L------------------------VPVLGVPVQS 100 (174)
T ss_dssp S------------------------SCEEEEEECC
T ss_pred C------------------------CCEEEeeCCC
Confidence 4 8999999974
|
| >4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.014 Score=53.93 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=73.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||.+.... ....++....|++-|+++.+ .-...|-+.+.+.+.++.+++.++++||++=||+. -+...++...
T Consensus 13 P~V~IimGS~SD-~~v~~~a~~~l~~~gi~~ev-~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa-hLpgvvA~~t 89 (173)
T 4grd_A 13 PLVGVLMGSSSD-WDVMKHAVAILQEFGVPYEA-KVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAA-HLPGMLAAKT 89 (173)
T ss_dssp CSEEEEESSGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSC-CHHHHHHHHC
T ss_pred CeEEEEeCcHhH-HHHHHHHHHHHHHcCCCEEE-EEEccccCHHHHHHHHHHHHhcCCeEEEEeccccc-cchhhheecC
Confidence 478888887643 23558888999999999764 45678999999999999999999999999988854 5778887766
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTG 168 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtg 168 (660)
. +|+|.||+..+..
T Consensus 90 ~------------------------~PVIgVPv~~~~l 103 (173)
T 4grd_A 90 T------------------------VPVLGVPVASKYL 103 (173)
T ss_dssp C------------------------SCEEEEEECCTTT
T ss_pred C------------------------CCEEEEEcCCCCC
Confidence 4 8999999987553
|
| >1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.017 Score=53.99 Aligned_cols=89 Identities=21% Similarity=0.324 Sum_probs=72.6
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
..+.||++.... ....++....|++-|+++.+ .-...+-+.+.+.+..+.+++.++++||++.|++. -+...+|...
T Consensus 14 ~~V~IimGS~SD-~~v~~~a~~~L~~~Gi~~dv-~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t 90 (183)
T 1o4v_A 14 PRVGIIMGSDSD-LPVMKQAAEILEEFGIDYEI-TIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAA-HLPGMVASIT 90 (183)
T ss_dssp CEEEEEESCGGG-HHHHHHHHHHHHHTTCEEEE-EECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSC-CHHHHHHHHC
T ss_pred CeEEEEeccHHH-HHHHHHHHHHHHHcCCCeEE-EEEcccCCHHHHHHHHHHHHhCCCcEEEEecCccc-ccHHHHHhcc
Confidence 578888886643 34568889999999999764 45678999999999999999999999999999865 5778887766
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
. +|+|.|||..+
T Consensus 91 ~------------------------~PVIgVP~~~~ 102 (183)
T 1o4v_A 91 H------------------------LPVIGVPVKTS 102 (183)
T ss_dssp S------------------------SCEEEEEECCT
T ss_pred C------------------------CCEEEeeCCCC
Confidence 4 89999999874
|
| >3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.023 Score=52.09 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=71.0
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc-CCCEEEEecCchhhhHHHHHHhH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV-QCDAFIAVGGGSVIDTCKAANLY 129 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIavGGGsviD~AK~~a~~ 129 (660)
.++.||++.... ....++....|++-|+.+.+ .-...|-+.+.+.+..+.+++. ++++||++-|++. -+...+|..
T Consensus 3 ~~V~Iimgs~SD-~~v~~~a~~~l~~~gi~~ev-~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa-~LpgvvA~~ 79 (159)
T 3rg8_A 3 PLVIILMGSSSD-MGHAEKIASELKTFGIEYAI-RIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSN-ALSGFVDGF 79 (159)
T ss_dssp CEEEEEESSGGG-HHHHHHHHHHHHHTTCEEEE-EECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSC-CHHHHHHHH
T ss_pred CeEEEEECcHHH-HHHHHHHHHHHHHcCCCEEE-EEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchh-hhHHHHHhc
Confidence 368888886642 33568899999999998773 4567899999999999999886 6999999999965 477777776
Q ss_pred hcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 130 YCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 130 ~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
.. +|+|.|||..
T Consensus 80 t~------------------------~PVIgVP~~~ 91 (159)
T 3rg8_A 80 VK------------------------GATIACPPPS 91 (159)
T ss_dssp SS------------------------SCEEECCCCC
T ss_pred cC------------------------CCEEEeeCCC
Confidence 64 8999999974
|
| >1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.012 Score=54.20 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=71.2
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||++.... ....++....|++-|+++.+ .-...+-+.+.+.+..+.+++.++++||++-|++. -+...++...
T Consensus 12 ~~V~IimGS~SD-~~v~~~a~~~L~~~Gi~~dv-~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa-~LpgvvA~~t 88 (170)
T 1xmp_A 12 SLVGVIMGSTSD-WETMKYACDILDELNIPYEK-KVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAA-HLPGMVAAKT 88 (170)
T ss_dssp CSEEEEESSGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSC-CHHHHHHTTC
T ss_pred CcEEEEECcHHH-HHHHHHHHHHHHHcCCCEEE-EEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchh-hhHHHHHhcc
Confidence 467888876542 33568888999999999763 45678999999999999999999999999999864 4777777655
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
. +|+|.|||..+
T Consensus 89 ~------------------------~PVIgVP~~~~ 100 (170)
T 1xmp_A 89 N------------------------LPVIGVPVQSK 100 (170)
T ss_dssp C------------------------SCEEEEEECCT
T ss_pred C------------------------CCEEEeeCCCC
Confidence 4 89999999864
|
| >4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.081 Score=49.14 Aligned_cols=88 Identities=22% Similarity=0.228 Sum_probs=70.3
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
.+-||.+.... ....++..+.|++-|+.+.+ .-+..+-+.+.+.+.++.+++.++++||++=||+. -+...+|....
T Consensus 24 ~V~IimGS~SD-~~v~~~a~~~L~~~gI~~e~-~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aa-hLpGvvAa~T~ 100 (181)
T 4b4k_A 24 LVGVIMGSTSD-WETMKYACDILDELNIPYEK-KVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAA-HLPGMVAAKTN 100 (181)
T ss_dssp SEEEEESSGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSC-CHHHHHHTTCC
T ss_pred cEEEEECCHhH-HHHHHHHHHHHHHcCCCeeE-EEEccccChHHHHHHHHHHHhcCceEEEEeccccc-cchhhHHhcCC
Confidence 46677776542 23568889999999999774 45778999999999999999999999999988865 56777776554
Q ss_pred CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 132 ~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
+|+|.||+-.+
T Consensus 101 ------------------------~PVIGVPv~s~ 111 (181)
T 4b4k_A 101 ------------------------LPVIGVPVQSK 111 (181)
T ss_dssp ------------------------SCEEEEECCCT
T ss_pred ------------------------CCEEEEecCCC
Confidence 89999999653
|
| >2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.064 Score=57.15 Aligned_cols=88 Identities=19% Similarity=0.187 Sum_probs=71.1
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC-CEEEEecCchhhhHHHHHHhH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC-DAFIAVGGGSVIDTCKAANLY 129 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~-D~IIavGGGsviD~AK~~a~~ 129 (660)
.++.||++.... ....++....|+.-|+.+.+ .-...|-+.+.+.+.++.+++.++ ++||++.|++. -+...+|..
T Consensus 266 ~~V~Ii~gs~SD-~~~~~~a~~~l~~~gi~~~v-~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a-~Lpgvva~~ 342 (425)
T 2h31_A 266 CRVVVLMGSTSD-LGHCEKIKKACGNFGIPCEL-RVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSN-GLGPVMSGN 342 (425)
T ss_dssp CEEEEEESCGGG-HHHHHHHHHHHHHTTCCEEE-EECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSC-CHHHHHHHH
T ss_pred CeEEEEecCccc-HHHHHHHHHHHHHcCCceEE-eeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCccc-chHhHHhcc
Confidence 478888887643 33558888999999998763 456689999999999999999999 69999999854 577777776
Q ss_pred hcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC
Q psy2427 130 YCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS 165 (660)
Q Consensus 130 ~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~ 165 (660)
.. +|+|.|||..
T Consensus 343 t~------------------------~PVIgvP~~~ 354 (425)
T 2h31_A 343 TA------------------------YPVISCPPLT 354 (425)
T ss_dssp CS------------------------SCEEECCCCC
T ss_pred CC------------------------CCEEEeeCcc
Confidence 64 8999999963
|
| >2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A | Back alignment and structure |
|---|
Probab=94.30 E-value=0.15 Score=53.07 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=52.4
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHHHh
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAANL 128 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~a~ 128 (660)
.+|++||..+..-.....+++.+.|++.|+++.++... .+. ...++++.+...++|.||++|| |++..++..+..
T Consensus 29 ~~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~--~~~--~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~~ 104 (332)
T 2bon_A 29 FPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTW--EKG--DAARYVEEARKFGVATVIAGGGDGTINEVSTALIQ 104 (332)
T ss_dssp -CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECC--STT--HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEec--Ccc--hHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHhh
Confidence 37899999876543234578999999999988765421 122 2334444454567999999999 999998888753
|
| >2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.17 Score=46.11 Aligned_cols=81 Identities=25% Similarity=0.408 Sum_probs=61.8
Q ss_pred EEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcC
Q psy2427 53 VCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCD 132 (660)
Q Consensus 53 ~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~ 132 (660)
+.||++... +....++....|++-|+++.+ .-...|-+.+.+.+..+.+++ ++||++-|++. -+...++....
T Consensus 2 V~Iimgs~S-D~~v~~~a~~~l~~~gi~~dv-~V~saHR~p~~~~~~~~~a~~---~ViIa~AG~aa-~Lpgvva~~t~- 74 (157)
T 2ywx_A 2 ICIIMGSES-DLKIAEKAVNILKEFGVEFEV-RVASAHRTPELVEEIVKNSKA---DVFIAIAGLAA-HLPGVVASLTT- 74 (157)
T ss_dssp EEEEESSGG-GHHHHHHHHHHHHHTTCCEEE-EECCTTTCHHHHHHHHHHCCC---SEEEEEEESSC-CHHHHHHTTCS-
T ss_pred EEEEEccHH-HHHHHHHHHHHHHHcCCCeEE-EEEcccCCHHHHHHHHHhcCC---CEEEEEcCchh-hhHHHHHhccC-
Confidence 567777654 233568888999999998763 456679999999888887665 99999998864 47777766554
Q ss_pred CCcchhhhhcCCCCCCCCCCCCCCcEEEEcC
Q psy2427 133 PEAEFLDYVNAPIGKGKPVTVPLKPLIAIPT 163 (660)
Q Consensus 133 ~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPT 163 (660)
+|+|.|||
T Consensus 75 -----------------------~PVIgVP~ 82 (157)
T 2ywx_A 75 -----------------------KPVIAVPV 82 (157)
T ss_dssp -----------------------SCEEEEEE
T ss_pred -----------------------CCEEEecC
Confidence 89999999
|
| >2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A | Back alignment and structure |
|---|
Probab=92.70 E-value=0.29 Score=50.82 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=50.9
Q ss_pred CCEEEEEECccccc---cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHH
Q psy2427 50 AQRVCVMTDPHLSK---LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKA 125 (660)
Q Consensus 50 ~~r~liVtd~~~~~---~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~ 125 (660)
.+|++||..+..-. ....+++.+.|++.|+++.++..- .+. ...++++.+...++|.||++|| |++..++..
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~--~~~--~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~ 99 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATE--KIG--DATLEAERAMHENYDVLIAAGGDGTLNEVVNG 99 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECC--STT--HHHHHHHHHTTTTCSEEEEEECHHHHHHHHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEec--Ccc--hHHHHHHHHhhcCCCEEEEEcCchHHHHHHHH
Confidence 46899999876532 124578999999999988765321 111 3334455555567899999999 888888777
Q ss_pred H
Q psy2427 126 A 126 (660)
Q Consensus 126 ~ 126 (660)
+
T Consensus 100 l 100 (337)
T 2qv7_A 100 I 100 (337)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A | Back alignment and structure |
|---|
Probab=92.23 E-value=0.52 Score=48.30 Aligned_cols=78 Identities=10% Similarity=0.184 Sum_probs=44.3
Q ss_pred CEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCC---CH-H--------HHHHHHH-HhHhcCCCEEEEecC
Q psy2427 51 QRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEP---TG-D--------SFLEATK-FVRSVQCDAFIAVGG 116 (660)
Q Consensus 51 ~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p---~~-~--------~v~~~~~-~~~~~~~D~IIavGG 116 (660)
+|++||..+...+ ....+++.+.|++.|+++.+........ .. . .+....+ .....++|+||++||
T Consensus 5 ~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GG 84 (307)
T 1u0t_A 5 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGG 84 (307)
T ss_dssp CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEEC
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeC
Confidence 7899999876433 2356889999999999887653322110 00 0 0111111 123457899999999
Q ss_pred -chhhhHHHHHHh
Q psy2427 117 -GSVIDTCKAANL 128 (660)
Q Consensus 117 -GsviD~AK~~a~ 128 (660)
|+++-+++.++.
T Consensus 85 DGT~l~a~~~~~~ 97 (307)
T 1u0t_A 85 DGTFLRAAELARN 97 (307)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcc
Confidence 888888887653
|
| >2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.19 Score=50.73 Aligned_cols=54 Identities=9% Similarity=0.236 Sum_probs=40.2
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHHH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAAN 127 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~a 127 (660)
|+.||..+.-......+++.+.|++.|+++. ..++|+||++|| |+++.+++.++
T Consensus 2 ki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~----------------------~~~~D~vv~lGGDGT~l~aa~~~~ 56 (272)
T 2i2c_A 2 KYMITSKGDEKSDLLRLNMIAGFGEYDMEYD----------------------DVEPEIVISIGGDGTFLSAFHQYE 56 (272)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTSSCEEC----------------------SSSCSEEEEEESHHHHHHHHHHTG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEeC----------------------CCCCCEEEEEcCcHHHHHHHHHHh
Confidence 5777777543223355788889999988761 357899999998 88988888764
|
| >2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.054 Score=55.28 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=44.4
Q ss_pred CCEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHHH
Q psy2427 50 AQRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAAN 127 (660)
Q Consensus 50 ~~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~a 127 (660)
.+|++||+.+.-.+ ....+++.+.|++.|+++.++......-...............++|+||++|| |+++-+++.++
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDGT~l~a~~~~~ 84 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAARTLA 84 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCcHHHHHHHHHhh
Confidence 47899998865322 23568899999999998876532110000000000001112346899999999 78888887763
|
| >3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A | Back alignment and structure |
|---|
Probab=91.51 E-value=0.5 Score=48.30 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=48.8
Q ss_pred cCCCEEEEEECcccccc---chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHH
Q psy2427 48 MKAQRVCVMTDPHLSKL---APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTC 123 (660)
Q Consensus 48 ~g~~r~liVtd~~~~~~---~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~A 123 (660)
...+|++||.++..-.. ...+++.+.|++.++++.++.-- ......++++.+.+ ++|.||++|| |++..++
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~----~~~~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~ 80 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTK----EQGDATKYCQEFAS-KVDLIIVFGGDGTVFECT 80 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECC----STTHHHHHHHHHTT-TCSEEEEEECHHHHHHHH
T ss_pred CCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEcc----CcchHHHHHHHhhc-CCCEEEEEccchHHHHHH
Confidence 34579999998864321 24578899999999988766321 12233444444433 8899999999 6666665
Q ss_pred HHH
Q psy2427 124 KAA 126 (660)
Q Consensus 124 K~~ 126 (660)
..+
T Consensus 81 ~~l 83 (304)
T 3s40_A 81 NGL 83 (304)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A | Back alignment and structure |
|---|
Probab=87.79 E-value=2.9 Score=43.49 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc-
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG- 117 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG- 117 (660)
..+.+++.+.|.+|+.+|++.........+.+++.+++.|+++.....+..++...+....++.+++.++|+|+..+.+
T Consensus 129 ~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~ 208 (385)
T 1pea_A 129 APLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGT 208 (385)
T ss_dssp HHHHHHHHTTTCSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTH
T ss_pred HHHHHHHHHccCcEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccc
Confidence 4577888888889999998754333334466888899999876532222223456677777787777799999997743
Q ss_pred hhhhHHHHH
Q psy2427 118 SVIDTCKAA 126 (660)
Q Consensus 118 sviD~AK~~ 126 (660)
.++-+.|.+
T Consensus 209 ~a~~~~~~~ 217 (385)
T 1pea_A 209 GTAELYRAI 217 (385)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 334444433
|
| >1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* | Back alignment and structure |
|---|
Probab=84.94 E-value=1 Score=45.39 Aligned_cols=57 Identities=26% Similarity=0.399 Sum_probs=40.2
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
|+.||+.+.-. .+++.+.|++.|+++.+...... .. .++|+||++|| |+.+.+++.+
T Consensus 31 ki~iv~~~~~~----~~~l~~~L~~~g~~v~~~~~~~~------------~~--~~~DlvIvlGGDGT~L~aa~~~ 88 (278)
T 1z0s_A 31 RAAVVYKTDGH----VKRIEEALKRLEVEVELFNQPSE------------EL--ENFDFIVSVGGDGTILRILQKL 88 (278)
T ss_dssp EEEEEESSSTT----HHHHHHHHHHTTCEEEEESSCCG------------GG--GGSSEEEEEECHHHHHHHHTTC
T ss_pred EEEEEeCCcHH----HHHHHHHHHHCCCEEEEcccccc------------cc--CCCCEEEEECCCHHHHHHHHHh
Confidence 58888875533 48899999999999875432111 01 27899999999 7777776643
|
| >3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A | Back alignment and structure |
|---|
Probab=84.40 E-value=2.7 Score=43.76 Aligned_cols=99 Identities=8% Similarity=0.053 Sum_probs=53.4
Q ss_pred CceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccC--CCHHHHH
Q psy2427 20 KEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVE--PTGDSFL 97 (660)
Q Consensus 20 ~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~--p~~~~v~ 97 (660)
..+.|++.|. ....+.++++.+|.+|+.||+| ..+.....+.+.+.+++.|+++......... +...+..
T Consensus 98 ~~~~~~~~p~-------~~~a~~~~~~~~gw~~vaii~d-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~ 169 (376)
T 3hsy_A 98 HPFVIQMRPD-------LKGALLSLIEYYQWDKFAYLYD-SDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYR 169 (376)
T ss_dssp CTTEEECSCC-------CHHHHHHHHHHTTCCEEEEEEC-STTCSHHHHHHHHHHHHHTCEEEEEECTTCC---------
T ss_pred CCceEEeCcc-------HHHHHHHHHHhcCCCEEEEEEe-CchhHHHHHHHHHHhhhcCCeEEEEEeccccccccchhHH
Confidence 3466676643 2355777788889999999996 4444446688999999989887633222212 2356777
Q ss_pred HHHHHhHhcCCCEEEEecCchhhhHHHHHHh
Q psy2427 98 EATKFVRSVQCDAFIAVGGGSVIDTCKAANL 128 (660)
Q Consensus 98 ~~~~~~~~~~~D~IIavGGGsviD~AK~~a~ 128 (660)
..+..++..++|+||-.|.+ -+++.++..
T Consensus 170 ~~l~~i~~~~~~vii~~~~~--~~~~~~~~q 198 (376)
T 3hsy_A 170 SLFQDLELKKERRVILDCER--DKVNDIVDQ 198 (376)
T ss_dssp -----------CEEEEESCH--HHHHHHHHH
T ss_pred HHHHHHhhCCCeEEEEECCH--HHHHHHHHH
Confidence 88888888899999987665 345555443
|
| >4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* | Back alignment and structure |
|---|
Probab=83.44 E-value=3.6 Score=42.18 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCch
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGS 118 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 118 (660)
..+.+++.+.|.+|+.+|+..........+.+.+.|++.|+++.....+... ..+....++.+++.++|+|+..+.+.
T Consensus 128 ~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~ 205 (368)
T 4eyg_A 128 IIIGDWAAKNGIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLA--NPDFAPFLQRMKDAKPDAMFVFVPAG 205 (368)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSS--SCCCHHHHHHHHHHCCSEEEEECCTT
T ss_pred HHHHHHHHHcCCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCC--CCcHHHHHHHHHhcCCCEEEEeccch
Confidence 3467778888999999998655443334577888999999886532222211 12334456667778999999976655
Q ss_pred hhhHHHHHHhHhc
Q psy2427 119 VIDTCKAANLYYC 131 (660)
Q Consensus 119 viD~AK~~a~~~~ 131 (660)
++..++.....
T Consensus 206 --~a~~~~~~~~~ 216 (368)
T 4eyg_A 206 --QGGNFMKQFAE 216 (368)
T ss_dssp --CHHHHHHHHHH
T ss_pred --HHHHHHHHHHH
Confidence 66776655544
|
| >3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* | Back alignment and structure |
|---|
Probab=82.88 E-value=5.8 Score=43.17 Aligned_cols=78 Identities=12% Similarity=0.049 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhc--CCCEEEEecCc
Q psy2427 40 EVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSV--QCDAFIAVGGG 117 (660)
Q Consensus 40 ~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIavGGG 117 (660)
.+.++++.+|.+++.+|+....+.....+.+++.+++.|+.+.....+...+...+....+..+++. ++++||..|.+
T Consensus 187 ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~~~ 266 (496)
T 3ks9_A 187 AMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEG 266 (496)
T ss_dssp HHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCH
T ss_pred HHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEecCh
Confidence 3666778889999999986665544466889999999999876434444456778888888888875 67788888765
|
| >3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A | Back alignment and structure |
|---|
Probab=82.73 E-value=6.2 Score=41.25 Aligned_cols=96 Identities=7% Similarity=0.048 Sum_probs=64.7
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
.+.|++.|. .-..+.+++..+|.+++.||+|.. ......+.+.+.+++.|+++.... ..+.....+....+
T Consensus 108 ~~~~~~~p~-------~~~a~~~~~~~~gw~~vaii~d~~-~g~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~~d~~~~l 178 (389)
T 3o21_A 108 QFVIQMRPA-------LKGAILSLLSYYKWEKFVYLYDTE-RGFSVLQAIMEAAVQNNWQVTARS-VGNIKDVQEFRRII 178 (389)
T ss_dssp SSEEECSCC-------SHHHHHHHHHHHTCCEEEEEECST-TCSHHHHHHHHHHHHTTCEEEEEE-CTTCCCTHHHHHHH
T ss_pred ceEEEEccC-------HHHHHHHHHHhCCCCEEEEEEcCc-HHHHHHHHHHHHhhcCCCeEEEEE-ecCCCCcHHHHHHH
Confidence 455665443 234566777788999999999653 333456888999999999876433 22212334688888
Q ss_pred HHhHhcCCCEEEEecCchhhhHHHHHH
Q psy2427 101 KFVRSVQCDAFIAVGGGSVIDTCKAAN 127 (660)
Q Consensus 101 ~~~~~~~~D~IIavGGGsviD~AK~~a 127 (660)
..++..++|+||-.|.+ -+++.++.
T Consensus 179 ~~ik~~~~~vii~~~~~--~~~~~i~~ 203 (389)
T 3o21_A 179 EEMDRRQEKRYLIDCEV--ERINTILE 203 (389)
T ss_dssp HHHHTTTCCEEEEESCH--HHHHHHHH
T ss_pred HHHHhCCCeEEEEECCH--HHHHHHHH
Confidence 99999999999987654 34455443
|
| >3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.70 E-value=3.2 Score=45.03 Aligned_cols=102 Identities=7% Similarity=0.022 Sum_probs=68.0
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
++-|++.|+.-.. ...+.++++.+|.+++.+|++...+.....+.+++.+++.|+.+.....+.......+....+
T Consensus 160 p~~fr~~psd~~~----~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l 235 (479)
T 3sm9_A 160 DYFARTVPPDFYQ----AKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVI 235 (479)
T ss_dssp TTEEESSCCTHHH----HHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHH
T ss_pred CCeEEeCCcHHHH----HHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHH
Confidence 4556655432211 223667778889999999987665554566889999999999876544455455566777767
Q ss_pred -HHhHhcCCCEEEEecCchhhhHHHHHHh
Q psy2427 101 -KFVRSVQCDAFIAVGGGSVIDTCKAANL 128 (660)
Q Consensus 101 -~~~~~~~~D~IIavGGGsviD~AK~~a~ 128 (660)
+.+++.++|+||..|.+. |+..++..
T Consensus 236 ~~~i~~s~a~vIi~~~~~~--~~~~l~~~ 262 (479)
T 3sm9_A 236 RELLQKPNARVVVLFMRSD--DSRELIAA 262 (479)
T ss_dssp HHHHTCTTCCEEEEECCHH--HHHHHHHH
T ss_pred HHHHhcCCCeEEEEEcChH--HHHHHHHH
Confidence 667778999999998653 45555443
|
| >2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=82.07 E-value=4.4 Score=38.38 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=54.5
Q ss_pred cChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEe
Q psy2427 35 PGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAV 114 (660)
Q Consensus 35 ~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIav 114 (660)
-|.+..|.. +++++ +|+-+|+-++... ..+.+.+.| ++++..+. --+.+++++.++.+++.++|+||
T Consensus 81 ~Dil~al~~-a~~~~-~kIavvg~~~~~~--~~~~~~~ll---~~~i~~~~----~~~~~e~~~~i~~l~~~G~~vvV-- 147 (196)
T 2q5c_A 81 FDTMRAVYN-AKRFG-NELALIAYKHSIV--DKHEIEAML---GVKIKEFL----FSSEDEITTLISKVKTENIKIVV-- 147 (196)
T ss_dssp HHHHHHHHH-HGGGC-SEEEEEEESSCSS--CHHHHHHHH---TCEEEEEE----ECSGGGHHHHHHHHHHTTCCEEE--
T ss_pred hHHHHHHHH-HHhhC-CcEEEEeCcchhh--HHHHHHHHh---CCceEEEE----eCCHHHHHHHHHHHHHCCCeEEE--
Confidence 333433333 35566 6888888777543 236777777 55555442 24567788899999999999976
Q ss_pred cCchhhhHHHHHH
Q psy2427 115 GGGSVIDTCKAAN 127 (660)
Q Consensus 115 GGGsviD~AK~~a 127 (660)
||+.+.++|+-..
T Consensus 148 G~~~~~~~A~~~G 160 (196)
T 2q5c_A 148 SGKTVTDEAIKQG 160 (196)
T ss_dssp ECHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcC
Confidence 5999999887543
|
| >2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 | Back alignment and structure |
|---|
Probab=81.08 E-value=5 Score=38.94 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=50.0
Q ss_pred HhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHH
Q psy2427 46 VNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKA 125 (660)
Q Consensus 46 ~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~ 125 (660)
++++ +|+-+|+-++... ..+.+.+.| ++++..+. --+.++++..++.+++.++|+|| ||+.+.|+|+-
T Consensus 103 ~~~~-~kIavVg~~~~~~--~~~~i~~ll---~~~i~~~~----~~~~ee~~~~i~~l~~~G~~vVV--G~~~~~~~A~~ 170 (225)
T 2pju_A 103 GKLT-SSIGVVTYQETIP--ALVAFQKTF---NLRLDQRS----YITEEDARGQINELKANGTEAVV--GAGLITDLAEE 170 (225)
T ss_dssp TCTT-SCEEEEEESSCCH--HHHHHHHHH---TCCEEEEE----ESSHHHHHHHHHHHHHTTCCEEE--ESHHHHHHHHH
T ss_pred HhhC-CcEEEEeCchhhh--HHHHHHHHh---CCceEEEE----eCCHHHHHHHHHHHHHCCCCEEE--CCHHHHHHHHH
Confidence 4455 6888888776532 236677777 55555443 35688999999999999999976 59999998875
Q ss_pred H
Q psy2427 126 A 126 (660)
Q Consensus 126 ~ 126 (660)
.
T Consensus 171 ~ 171 (225)
T 2pju_A 171 A 171 (225)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A | Back alignment and structure |
|---|
Probab=81.03 E-value=5.6 Score=40.82 Aligned_cols=88 Identities=17% Similarity=0.050 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcc-cCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 39 REVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR-VEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 39 ~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~-~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
..+.+++.+.|.+|+.+|++.........+.+++.|++.|+++.....+. ... +....++.+++.++|.|+..+.+
T Consensus 140 ~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~---d~~~~~~~l~~~~~dai~~~~~~ 216 (375)
T 4evq_A 140 RATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDV---EFQSALAEIASLKPDCVYAFFSG 216 (375)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC---CCHHHHHHHHHHCCSEEEEECCT
T ss_pred HHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCc---cHHHHHHHHHhcCCCEEEEecCc
Confidence 34667788889999999986554443455778899999999864222221 122 23345666667789999997665
Q ss_pred hhhhHHHHHHhHhc
Q psy2427 118 SVIDTCKAANLYYC 131 (660)
Q Consensus 118 sviD~AK~~a~~~~ 131 (660)
.++..++.....
T Consensus 217 --~~a~~~~~~~~~ 228 (375)
T 4evq_A 217 --GGALKFIKDYAA 228 (375)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --chHHHHHHHHHH
Confidence 356666554443
|
| >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A | Back alignment and structure |
|---|
Probab=80.35 E-value=13 Score=31.71 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=45.9
Q ss_pred CCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhH
Q psy2427 50 AQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLY 129 (660)
Q Consensus 50 ~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~ 129 (660)
..|++||.|.... .+.+...|++.|+.+..+.. ..++.+.+++..+|+|| +.+...+++.+.+...
T Consensus 18 ~~~ilivdd~~~~----~~~l~~~L~~~g~~v~~~~~---------~~~al~~l~~~~~dlvi-~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 18 SMRVLLIEKNSVL----GGEIEKGLNVKGFMADVTES---------LEDGEYLMDIRNYDLVM-VSDKNALSFVSRIKEK 83 (137)
T ss_dssp CSEEEEECSCHHH----HHHHHHHHHHTTCEEEEESC---------HHHHHHHHHHSCCSEEE-ECSTTHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHH----HHHHHHHHHHcCcEEEEeCC---------HHHHHHHHHcCCCCEEE-EcCccHHHHHHHHHhc
Confidence 3688888776542 25577778777887664432 34555666777899999 8888888888777544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 660 | ||||
| d1rrma_ | 385 | e.22.1.2 (A:) Lactaldehyde reductase FucO {Escheri | 4e-34 | |
| d1rrma_ | 385 | e.22.1.2 (A:) Lactaldehyde reductase FucO {Escheri | 3e-22 | |
| d1vlja_ | 398 | e.22.1.2 (A:) NADH-dependent butanol dehydrogenase | 5e-32 | |
| d1vlja_ | 398 | e.22.1.2 (A:) NADH-dependent butanol dehydrogenase | 4e-20 | |
| d1o2da_ | 359 | e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermo | 2e-30 | |
| d1o2da_ | 359 | e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermo | 5e-16 | |
| d1oj7a_ | 390 | e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Es | 4e-28 | |
| d1oj7a_ | 390 | e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Es | 2e-21 | |
| d1jq5a_ | 366 | e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus ste | 2e-23 | |
| d1jq5a_ | 366 | e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus ste | 2e-14 | |
| d1kq3a_ | 364 | e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga m | 2e-19 | |
| d1kq3a_ | 364 | e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga m | 3e-13 | |
| d1sg6a_ | 389 | e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Asper | 0.002 |
| >d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} Length = 385 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Lactaldehyde reductase FucO species: Escherichia coli [TaxId: 562]
Score = 132 bits (331), Expect = 4e-34
Identities = 85/365 (23%), Positives = 145/365 (39%), Gaps = 46/365 (12%)
Query: 13 MSNPTPDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLD 72
M+N + + T G G + ++ Q+ ++TD L + V D
Sbjct: 1 MAN--------RMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTD 52
Query: 73 SLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCD 132
+ G+ + ++D V PT E ++ D IA+GGGS DTCKA + +
Sbjct: 53 KMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNN 112
Query: 133 PEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRA 192
PE + + K P P++AIPTT+GT +E T + E + K +
Sbjct: 113 PEFADVRSLEGLSPTNK----PSVPILAIPTTAGTAAEVTINYVITDEEKRRKFVCVDPH 168
Query: 193 LKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQ 252
P + ID +P + A +G D HA+E +G
Sbjct: 169 DIPQVAFIDADMMDGMPPALKAATGVDALTHAIE-------------------GYITRGA 209
Query: 253 NPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYP 312
++D A++ I + +V D A M L +AG+GF N G+ L HG+++P
Sbjct: 210 WALTDALHIKAIEIIAGALRGSVAGDKD--AGEEMALGQYVAGMGFSNVGLGLVHGMAHP 267
Query: 313 ISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVK 372
+ PHG++ + P V + A + E++ + A ++G V +
Sbjct: 268 LGA-------------FYNTPHGVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMS 314
Query: 373 KADAV 377
+A
Sbjct: 315 LEEAR 319
|
| >d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} Length = 385 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Lactaldehyde reductase FucO species: Escherichia coli [TaxId: 562]
Score = 97.0 bits (240), Expect = 3e-22
Identities = 66/282 (23%), Positives = 111/282 (39%), Gaps = 35/282 (12%)
Query: 377 VPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDV 436
+PTT+GT +E T + E + K + P + ID +P + A +G D
Sbjct: 137 IPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDA 196
Query: 437 FCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDD 496
HA+E +G ++D A++ I + +V D
Sbjct: 197 LTHAIE-------------------GYITRGAWALTDALHIKAIEIIAGALRGSVAGDKD 237
Query: 497 LEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 556
A M L +AG+GF N G+ L HG+++P+ PHG++ +
Sbjct: 238 --AGEEMALGQYVAGMGFSNVGLGLVHGMAHPLGA-------------FYNTPHGVANAI 282
Query: 557 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVL 616
P V + A + E++ + A ++G V + +A + V + I L+ +
Sbjct: 283 LLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRDV 342
Query: 617 GYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMS 658
G DIPAL L T PRE + ED+ L+ +
Sbjct: 343 GVRKEDIPALAQAAL-DDVCTGGNPREATLEDIVELYHTAWE 383
|
| >d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} Length = 398 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: NADH-dependent butanol dehydrogenase A (TM0820) species: Thermotoga maritima [TaxId: 2336]
Score = 126 bits (316), Expect = 5e-32
Identities = 77/354 (21%), Positives = 140/354 (39%), Gaps = 44/354 (12%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKV 87
+ I G G ++G ++ N ++V + + K +DSL +HG+++ V
Sbjct: 13 TKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGV 72
Query: 88 RVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGK 147
+ P EA + + + +A + VGGGSV+D+ KA + +
Sbjct: 73 KPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAF------I 126
Query: 148 GKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLS 207
GK P+ + T S TG+E G ++ E K K G++++AL P + +IDP +
Sbjct: 127 GKYQIEKALPIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQFT 186
Query: 208 LPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267
LP+ T Y D H LE + +S+ A ++TI
Sbjct: 187 LPKEQTVYGAVDAISHILEYYF-------------------DGSSPEISNEIAEGTIRTI 227
Query: 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNA----GVHLCHGLSYPISGNVKTFHPA 323
+ +R + DD EAR+++ ++ +A G G CH + + +S
Sbjct: 228 MKMTERLIEKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSA-------- 279
Query: 324 GYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAE-LLGADVSRVKKADA 376
I HG + + PA + +P + A+ + G + +
Sbjct: 280 -----LYDIAHGAGLAIVFPAWMKYVYRKNPAQFERFAKKIFGFEGEGEELILK 328
|
| >d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} Length = 398 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: NADH-dependent butanol dehydrogenase A (TM0820) species: Thermotoga maritima [TaxId: 2336]
Score = 90.9 bits (224), Expect = 4e-20
Identities = 64/341 (18%), Positives = 121/341 (35%), Gaps = 49/341 (14%)
Query: 329 HPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETT 388
++ G V+ + A E I A + + + V T S TG+E
Sbjct: 94 EAVLGVGGGSVVDSAKAVAAGAL--YEGDIWDAFIGKYQIEKALPIFDVLTISATGTEMN 151
Query: 389 GVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALP 448
G ++ E K K G++++AL P + +IDP +LP+ T Y D H LE +
Sbjct: 152 GNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYF--- 208
Query: 449 YTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASA 508
+S+ A ++TI + +R + DD EAR+++ ++
Sbjct: 209 ----------------DGSSPEISNEIAEGTIRTIMKMTERLIEKPDDYEARANLAWSAT 252
Query: 509 MAGVGFGNA----GVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNF 564
+A G G CH + + +S I HG + + PA +
Sbjct: 253 IALNGTMAVGRRGGEWACHRIEHSLSA-------------LYDIAHGAGLAIVFPAWMKY 299
Query: 565 TAASSPERHIEAAE-LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADI 623
+P + A+ + G + + G + + ++ ++ LK G DI
Sbjct: 300 VYRKNPAQFERFAKKIFGFEGEGEELILKG---IEAFKNWLKKVGAPVSLKDAGIPEEDI 356
Query: 624 PALVTGTLPQHR-------ITKLAPREQSEEDLANLFENSM 657
+V + + ED+ + + +
Sbjct: 357 DKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAA 397
|
| >d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} Length = 359 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Alcohol dehydrogenase TM0920 species: Thermotoga maritima [TaxId: 2336]
Score = 120 bits (301), Expect = 2e-30
Identities = 83/359 (23%), Positives = 141/359 (39%), Gaps = 45/359 (12%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATL-DSLTRHGVKFELFDKV 87
+ + G + + G +++++ +R V+T SK L L + +E+FD+V
Sbjct: 8 TDVFFGEKILEKRG-NIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEV 66
Query: 88 RVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGK 147
P+ D+ ++A + R+ D + +GGGS +D KA + + + D
Sbjct: 67 EENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLY------ 120
Query: 148 GKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLS 207
+ P++ IPTT+GTGSE T SI + P +DP +T S
Sbjct: 121 DREKVKHWLPVVEIPTTAGTGSEVTPYSILTDPEGNKRGCTLM---FPVYAFLDPRYTYS 177
Query: 208 LPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267
+ + +T +G D HA+E + + P SD A A++ I
Sbjct: 178 MSDELTLSTGVDALSHAVEGYL-------------------SRKSTPPSDALAIEAMKII 218
Query: 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSD 327
+ +A + + EAR M +AS +AG+ G L H L YP++
Sbjct: 219 HRNLPKA--IEGNREARKKMFVASCLAGMVIAQTGTTLAHALGYPLTTEKG--------- 267
Query: 328 DHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSE 386
I HG + M P V PE+ + G + + K + SE
Sbjct: 268 ----IKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIFGGSLLKFLKELGLYEKVAVSSE 322
|
| >d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} Length = 359 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Alcohol dehydrogenase TM0920 species: Thermotoga maritima [TaxId: 2336]
Score = 77.8 bits (190), Expect = 5e-16
Identities = 59/284 (20%), Positives = 104/284 (36%), Gaps = 57/284 (20%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
+PTT+GTGSE T SI + P +DP +T S+ + +T +G D
Sbjct: 133 EIPTTAGTGSEVTPYSILTDPEGNKRGCTLM---FPVYAFLDPRYTYSMSDELTLSTGVD 189
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
HA+E + + P SD A A++ I + +A +
Sbjct: 190 ALSHAVEGYL-------------------SRKSTPPSDALAIEAMKIIHRNLPKA--IEG 228
Query: 496 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV 555
+ EAR M +AS +AG+ G L H L YP++ I HG +
Sbjct: 229 NREARKKMFVASCLAGMVIAQTGTTLAHALGYPLTTEKG-------------IKHGKATG 275
Query: 556 MSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKV 615
M P V PE+ + G + ++ ++ + +
Sbjct: 276 MVLPFVMEVMKEEIPEKVDTVNHIFGGSL----------------LKFLKELGL---YEK 316
Query: 616 LGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMSV 659
+ +S ++ V + + K P + E + N++ ++ V
Sbjct: 317 VAVSSEELEKWVEKGS-RAKHLKNTPGTFTPEKIRNIYREALGV 359
|
| >d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]} Length = 390 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Hypothetical oxidoreductase yqhD species: Escherichia coli [TaxId: 562]
Score = 114 bits (286), Expect = 4e-28
Identities = 66/337 (19%), Positives = 126/337 (37%), Gaps = 34/337 (10%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+ I G G + + + A+ + + K + LD+L G+ F +
Sbjct: 13 TRILFGKGAIAGLR-EQIPHDARVLITYGGGSVKKTGVLDQVLDAL--KGMDVLEFGGIE 69
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
P ++ + A K VR + +AVGGGSV+D K PE ++ + G
Sbjct: 70 PNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHI---LQTG 126
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
P+ + T TGSE+ ++ + K + ++P ++DP++T +L
Sbjct: 127 GKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTL 186
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P R A D F H +E + P + D +A L T+
Sbjct: 187 PPRQVANGVVDAFVHTVEQYVTKPVD------------------AKIHDRFAEGILLTLI 228
Query: 269 QYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDD 328
+ +A+ ++ + R+++ A+ A G AGV T
Sbjct: 229 EDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWA----------THMLGHELTA 278
Query: 329 HPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLG 365
+ H ++ + PA++N + + ++ AE +
Sbjct: 279 MHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVW 315
|
| >d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]} Length = 390 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Hypothetical oxidoreductase yqhD species: Escherichia coli [TaxId: 562]
Score = 94.7 bits (234), Expect = 2e-21
Identities = 52/329 (15%), Positives = 112/329 (34%), Gaps = 29/329 (8%)
Query: 328 DHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSET 387
+ G SV+ + + G ++ V T TGSE+
Sbjct: 90 TFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSES 149
Query: 388 TGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447
++ + K + ++P ++DP++T +LP R A D F H +E +
Sbjct: 150 NAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTK 209
Query: 448 PYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLAS 507
P + D +A L T+ + +A+ ++ + R+++ A+
Sbjct: 210 PVD------------------AKIHDRFAEGILLTLIEDGPKALKEPENYDVRANVMWAA 251
Query: 508 AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAA 567
A G AGV T + H ++ + PA++N
Sbjct: 252 TQALNGLIGAGVPQDWA----------THMLGHELTAMHGLDHAQTLAIVLPALWNEKRD 301
Query: 568 SSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALV 627
+ + ++ AE + +++ + R + +Q+ + L G + IPAL+
Sbjct: 302 TKRAKLLQYAERVW-NITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALL 360
Query: 628 TGTLPQHRITKLAPREQSEEDLANLFENS 656
+ + + ++E +
Sbjct: 361 KKLEEHGMTQLGENHDITLDVSRRIYEAA 389
|
| >d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 366 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 100 bits (248), Expect = 2e-23
Identities = 56/347 (16%), Positives = 107/347 (30%), Gaps = 52/347 (14%)
Query: 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVR 88
+ G V ++ + + + V+ D + K+A ++ L + + E
Sbjct: 10 AKYVQGKNVITKIA-NYLEGIGNKTVVIADEIVWKIA-GHTIVNELKKGNIAAEEVV-FS 66
Query: 89 VEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKG 148
E + + R + I VGGG +DT KA
Sbjct: 67 GEASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADELDAY--------------- 111
Query: 149 KPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSL 208
++ +PT + T + T+ + Y P L L+D +
Sbjct: 112 ---------IVIVPTAASTDAPTSAL-SVIYSDDGVFESYRFYKKNPDLVLVDTKIIANA 161
Query: 209 PERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR 268
P R+ A D +E+ + + +T A ++ A QT+
Sbjct: 162 PPRLLASGIADALATWVEARSVIKSGGKTM---------AGGIPTIAAEAIAEKCEQTLF 212
Query: 269 QYFKRAVYNQDDLEA----RSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAG 324
+Y K A + + + + ++G+GF + G+ H + + H
Sbjct: 213 KYGKLAYESVKAKVVTPALEAVVEANTLLSGLGFESGGLAAAHAIHNGFTALEGEIHH-- 270
Query: 325 YSDDHPIIPHGLSV--VMSAPAVFNFTAASSPERHIEAAELLGADVS 369
+ HG V + ER+IE L V+
Sbjct: 271 -------LTHGEKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVT 310
|
| >d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 366 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 72.7 bits (177), Expect = 2e-14
Identities = 46/285 (16%), Positives = 86/285 (30%), Gaps = 50/285 (17%)
Query: 376 AVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFD 435
VPT + T + T+ + Y P L L+D + P R+ A D
Sbjct: 114 IVPTAASTDAPTSAL-SVIYSDDGVFESYRFYKKNPDLVLVDTKIIANAPPRLLASGIAD 172
Query: 436 VFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD 495
+E+ + + +T A ++ A QT+ +Y K A +
Sbjct: 173 ALATWVEARSVIKSGGKTM---------AGGIPTIAAEAIAEKCEQTLFKYGKLAYESVK 223
Query: 496 DLEA----RSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHG 551
+ + + ++G+GF + G+ H + + H + HG
Sbjct: 224 AKVVTPALEAVVEANTLLSGLGFESGGLAAAHAIHNGFTALEGEIHH---------LTHG 274
Query: 552 LSV--VMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKI 609
V + ER+IE L V+ L D
Sbjct: 275 EKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVT----------LED----------- 313
Query: 610 ENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
+K+ + DI + + T + +D+A+
Sbjct: 314 ---IKLKDASREDILKVAKAATAE-GETIHNAFNVTADDVADAIF 354
|
| >d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 364 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 88.2 bits (217), Expect = 2e-19
Identities = 52/349 (14%), Positives = 102/349 (29%), Gaps = 54/349 (15%)
Query: 26 MASSTI-----RIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK 80
M ++TI G G + + ++ +R V+ D + K + S T+ V
Sbjct: 2 MITTTIFPGRYVQGAGAINILE-EELSRFGERAFVVIDDFVDKNVLGENFFSSFTKVRVN 60
Query: 81 FELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDY 140
++F + +E + + D + +GGG +DT KA P
Sbjct: 61 KQIFGGECSDEE----IERLSGLVEEETDVVVGIGGGKTLDTAKAVAYKLKKP------- 109
Query: 141 VNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 200
++ +PT + T + + +S+ + K + + +
Sbjct: 110 -----------------VVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVL-V 151
Query: 201 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260
D P R D E+ + +
Sbjct: 152 DTEIVAKAPARFLVAGMGDALATWFEAESCKQKY------APNMTGRLGSMTAYALARLC 205
Query: 261 RFALQTIRQYFKRAVYNQDDLEARSHMHL-ASAMAGVGFGNAGVHLCHGLSYPISGNVKT 319
L KR+V + A + + ++G+GF + G+ H
Sbjct: 206 YETLLEYGVLAKRSVEEKSVTPALEKIVEANTLLSGLGFESGGLAAAHA----------I 255
Query: 320 FHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADV 368
+ ++ HG V + A T P + IE +V
Sbjct: 256 HNGLTVLENTHKYLHGEKVAIGVLASLFLTDK--PRKMIEEVYSFCEEV 302
|
| >d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 364 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 69.7 bits (169), Expect = 3e-13
Identities = 32/284 (11%), Positives = 76/284 (26%), Gaps = 46/284 (16%)
Query: 375 DAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGF 434
VPT + T + + +S+ + K + + +D P R
Sbjct: 111 VIVPTIASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVL-VDTEIVAKAPARFLVAGMG 169
Query: 435 DVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQ 494
D E+ + + L KR+V +
Sbjct: 170 DALATWFEAESCKQKY------APNMTGRLGSMTAYALARLCYETLLEYGVLAKRSVEEK 223
Query: 495 DDLEARSHMHL-ASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLS 553
A + + ++G+GF + G+ H + ++ HG
Sbjct: 224 SVTPALEKIVEANTLLSGLGFESGGLAAAHA----------IHNGLTVLENTHKYLHGEK 273
Query: 554 VVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGL 613
V + A D + + + V + +++ + L
Sbjct: 274 VAIGVLASLFL-------------------------TDKPRKMIEEVYSFCEEVGLPTTL 308
Query: 614 KVLGY---TSADIPALVTGTLPQHRITKLAPREQSEEDLANLFE 654
+G + D+ + ++ P+ + +D+ +
Sbjct: 309 AEIGLDGVSDEDLMKVAEKACDKNETIHNEPQPVTSKDVFFALK 352
|
| >d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]} Length = 389 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Dehydroquinate synthase, DHQS domain: Dehydroquinate synthase, DHQS species: Aspergillus nidulans [TaxId: 162425]
Score = 38.8 bits (89), Expect = 0.002
Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 24/128 (18%)
Query: 30 TIRIGPGVTREVGMDMV--NMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKV 87
+I G+ R + + + ++TD ++ + + ++ + + ++
Sbjct: 11 SIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIY-TPSFEEAFRKRAAEITPSPRL 69
Query: 88 RV--EPTGDSFLEATKFVRSVQ---------------CDAFIAVGGGSVIDTCKAANLYY 130
+ P G E +K ++ IA+GGG + D Y
Sbjct: 70 LIYNRPPG----EVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY 125
Query: 131 CDPEAEFL 138
Sbjct: 126 MRGVRYVQ 133
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 660 | |||
| d1rrma_ | 385 | Lactaldehyde reductase FucO {Escherichia coli [Tax | 100.0 | |
| d1vlja_ | 398 | NADH-dependent butanol dehydrogenase A (TM0820) {T | 100.0 | |
| d1oj7a_ | 390 | Hypothetical oxidoreductase yqhD {Escherichia coli | 100.0 | |
| d1o2da_ | 359 | Alcohol dehydrogenase TM0920 {Thermotoga maritima | 100.0 | |
| d1jq5a_ | 366 | Glycerol dehydrogenase {Bacillus stearothermophilu | 100.0 | |
| d1kq3a_ | 364 | Glycerol dehydrogenase {Thermotoga maritima [TaxId | 100.0 | |
| d1sg6a_ | 389 | Dehydroquinate synthase, DHQS {Aspergillus nidulan | 99.95 | |
| d1ujna_ | 347 | Dehydroquinate synthase, DHQS {Thermus thermophilu | 99.94 | |
| d1rrma_ | 385 | Lactaldehyde reductase FucO {Escherichia coli [Tax | 99.72 | |
| d1oj7a_ | 390 | Hypothetical oxidoreductase yqhD {Escherichia coli | 99.45 | |
| d1jq5a_ | 366 | Glycerol dehydrogenase {Bacillus stearothermophilu | 99.43 | |
| d1vlja_ | 398 | NADH-dependent butanol dehydrogenase A (TM0820) {T | 99.38 | |
| d1kq3a_ | 364 | Glycerol dehydrogenase {Thermotoga maritima [TaxId | 99.34 | |
| d1o2da_ | 359 | Alcohol dehydrogenase TM0920 {Thermotoga maritima | 99.3 | |
| d1sg6a_ | 389 | Dehydroquinate synthase, DHQS {Aspergillus nidulan | 99.11 | |
| d1ujna_ | 347 | Dehydroquinate synthase, DHQS {Thermus thermophilu | 98.51 | |
| d1o4va_ | 169 | N5-CAIR mutase (phosphoribosylaminoimidazole carbo | 96.72 | |
| d1qcza_ | 163 | N5-CAIR mutase (phosphoribosylaminoimidazole carbo | 96.58 | |
| d1u11a_ | 159 | N5-CAIR mutase (phosphoribosylaminoimidazole carbo | 96.22 | |
| d1xmpa_ | 155 | N5-CAIR mutase (phosphoribosylaminoimidazole carbo | 95.87 | |
| d2bona1 | 295 | Lipid kinase YegS {Escherichia coli [TaxId: 562]} | 95.06 | |
| d2qv7a1 | 312 | Diacylglycerol kinase DgkB {Staphylococcus aureus | 94.77 | |
| d1u0ta_ | 302 | Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob | 90.34 | |
| d2pjua1 | 186 | Propionate catabolism operon regulatory protein Pr | 89.82 | |
| d1qo0a_ | 373 | Amide receptor/negative regulator of the amidase o | 85.1 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 84.18 | |
| d1pfka_ | 320 | ATP-dependent phosphofructokinase {Escherichia col | 82.99 | |
| d1zpda1 | 175 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 80.99 |
| >d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Lactaldehyde reductase FucO species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-66 Score=559.95 Aligned_cols=376 Identities=27% Similarity=0.404 Sum_probs=339.2
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
+++++||.|++++|+++++++|.+|+|||||+++.+.+.++++++.|++.|+++.+|+++++||+.++|+++++.+++++
T Consensus 8 ~~~~~fG~g~l~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~~~~~~~~ 87 (385)
T d1rrma_ 8 NETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSG 87 (385)
T ss_dssp CSEEEESTTGGGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHT
T ss_pred CCCcEECcCHHHHHHHHHHHcCCCEEEEEECcchhhCcHHHHHHHHHHHcCCeEEEEcCccCCCCHHHHHHHhhhhhccC
Confidence 46799999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCC-cchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCcee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPE-AEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKT 186 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~-~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~ 186 (660)
+|+||||||||+||+||+++.++.++. ...+++.. ..+...+.+|+|+||||+|||||+|+++|+++++++.|.
T Consensus 88 ~D~IiaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~-----~~~~~~~~lP~i~IPTtagTgse~t~~avi~~~~~~~K~ 162 (385)
T d1rrma_ 88 ADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEG-----LSPTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRRKF 162 (385)
T ss_dssp CSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSE-----ECCCCSCCSCEEEEECSSSCCTTTCSEEEEEETTTTEEE
T ss_pred CCEEEecCCCchhhHHHHHHHHhcCCccchhhhhhc-----cccccCCCCceEeccccccccccccccccccccccccee
Confidence 999999999999999999999887643 22333332 234455669999999999999999999999999999999
Q ss_pred eeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy2427 187 GIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQT 266 (660)
Q Consensus 187 ~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~ 266 (660)
.+.++.++|+++|+||+++.++|++++++|++|+|+|++|+|++ ...+|+++.++++++++
T Consensus 163 ~~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~h~~E~~~s-------------------~~~~p~~~~~a~~a~~~ 223 (385)
T d1rrma_ 163 VCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYIT-------------------RGAWALTDALHIKAIEI 223 (385)
T ss_dssp EEECGGGCCSEEEECGGGTTTSCHHHHHHHHHHHHHHHHHHHHS-------------------TTCCHHHHHHHHHHHHH
T ss_pred eeeeeecccccccchHHHhcCCChheeeechhhhhhhccchhhc-------------------ccccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 35677777777777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHH
Q psy2427 267 IRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVF 346 (660)
Q Consensus 267 i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l 346 (660)
+.++++.+.
T Consensus 224 ~~~~l~~~~----------------------------------------------------------------------- 232 (385)
T d1rrma_ 224 IAGALRGSV----------------------------------------------------------------------- 232 (385)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHhhhhhh-----------------------------------------------------------------------
Confidence 766665533
Q ss_pred HhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCc
Q psy2427 347 NFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPE 426 (660)
Q Consensus 347 ~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~ 426 (660)
T Consensus 233 -------------------------------------------------------------------------------- 232 (385)
T d1rrma_ 233 -------------------------------------------------------------------------------- 232 (385)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2427 427 RVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLA 506 (660)
Q Consensus 427 ~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~a 506 (660)
.+ +.++|+++++|
T Consensus 233 -----------------------------------------------------------------~~--~~~~~~~~~~a 245 (385)
T d1rrma_ 233 -----------------------------------------------------------------AG--DKDAGEEMALG 245 (385)
T ss_dssp -----------------------------------------------------------------TT--CHHHHHHHHHH
T ss_pred -----------------------------------------------------------------cc--hhhHHHHHHHH
Confidence 21 34467888999
Q ss_pred HHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCC
Q psy2427 507 SAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSR 586 (660)
Q Consensus 507 s~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~ 586 (660)
++++|+++++++++++|+++|+|++.+ +++||.++++++|+|++|+.+..++++.++++++|....+
T Consensus 246 ~~~ag~~~~~~~~g~~hai~~~l~~~~-------------~i~HG~a~ai~lp~v~~~~~~~~~~~~~~~a~~~~~~~~~ 312 (385)
T d1rrma_ 246 QYVAGMGFSNVGLGLVHGMAHPLGAFY-------------NTPHGVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEG 312 (385)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHTTCCCTT
T ss_pred HHHHHhhhhcCccchhhhhhccccccc-------------ccCccceehhhhHHHHHHhhhhhHHHHHHHHHHhCCcccC
Confidence 999999999999999999999999875 7999999999999999999999999999999999988888
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHhhc
Q psy2427 587 VKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMSV 659 (660)
Q Consensus 587 ~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~~~ 659 (660)
.+.++.+..+++++++|++++|+|++|+|+|++++|++++++.|+.+ ....+||+++|+||+++||+++|+|
T Consensus 313 ~~~~~~~~~~i~~i~~~~~~lglP~~L~d~Gv~~~~l~~ia~~a~~~-~~~~~nP~~~t~~di~~il~~a~~g 384 (385)
T d1rrma_ 313 MSLEEARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDD-VCTGGNPREATLEDIVELYHTAWEG 384 (385)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCCSSGGGGTCCGGGHHHHHHHHHTC-GGGGGCSSCCCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhC-ccccCCCccCCHHHHHHHHHHHHcC
Confidence 88889999999999999999999999999999999999999999854 5667899999999999999999986
|
| >d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: NADH-dependent butanol dehydrogenase A (TM0820) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.9e-63 Score=536.64 Aligned_cols=383 Identities=22% Similarity=0.336 Sum_probs=334.1
Q ss_pred CCCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHH
Q psy2427 18 PDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSF 96 (660)
Q Consensus 18 ~~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v 96 (660)
.|..|+|..| ++|+||.|++++|+++++++|.+|++||||++. ...++.+++++.|++.|+++.+|++++++|+.++|
T Consensus 3 ~M~~f~f~~p-~~i~~G~g~~~~l~~~l~~~g~~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~v 81 (398)
T d1vlja_ 3 HMENFVFHNP-TKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKV 81 (398)
T ss_dssp CCCCEEECCC-CEEEESTTCGGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHH
T ss_pred CCCCeEEeCC-CeEEEccCHHHHHHHHHHhcCCCeEEEEECCcHHHHhhHHHHHHHHHHhcCCeEEEEcCccCCCCHHHH
Confidence 5888999985 999999999999999999999999999999875 45667899999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceE
Q psy2427 97 LEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSI 176 (660)
Q Consensus 97 ~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~av 176 (660)
+++++.+++.++|+||||||||++|+||+++..+.++ .+++++... .....+.+|+|+||||+|||||+|++++
T Consensus 82 ~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~-~~~~~~~~~-----~~~~~~~~P~i~iPTt~gtgse~t~~av 155 (398)
T d1vlja_ 82 HEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYE-GDIWDAFIG-----KYQIEKALPIFDVLTISATGTEMNGNAV 155 (398)
T ss_dssp HHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCS-SCGGGGGGT-----SCCCCCCCCEEEEECSCSSCGGGSSEEE
T ss_pred HHHhhhcccccCceEEecCCcchhhHHHHHHHHhhcc-cchHHhhcc-----cccccCCCCeeeeecccccceeccccce
Confidence 9999999999999999999999999999999988764 577777642 2334566999999999999999999999
Q ss_pred EeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy2427 177 FDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVS 256 (660)
Q Consensus 177 i~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (660)
+++++++.|.++.++..+|+++|+||+++.++|+++++++++|+|+|++|+|++ ...+|
T Consensus 156 i~~~~~~~K~~~~~~~~~p~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s-------------------~~~~~-- 214 (398)
T d1vlja_ 156 ITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFD-------------------GSSPE-- 214 (398)
T ss_dssp EEETTTTEEEEEECGGGSCSEEEECGGGGGGSCHHHHHHHHHHHHHHHHHHHTS-------------------SCCCH--
T ss_pred eeeccccccceeeeccccceeEEEehhhcCCCcchhhccchhhHHHHhhhhccc-------------------ccccc--
Confidence 999988999999999999999999999999999999999999999999999988 23344
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
T Consensus 215 -------------------------------------------------------------------------------- 214 (398)
T d1vlja_ 215 -------------------------------------------------------------------------------- 214 (398)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 416 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~ 416 (660)
T Consensus 215 -------------------------------------------------------------------------------- 214 (398)
T d1vlja_ 215 -------------------------------------------------------------------------------- 214 (398)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2427 417 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDD 496 (660)
Q Consensus 417 d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~ 496 (660)
+++.+|+++++++.++++++++|+.|
T Consensus 215 ------------------------------------------------------~s~~~a~~~~~~~~~~l~~~~~~~~~ 240 (398)
T d1vlja_ 215 ------------------------------------------------------ISNEIAEGTIRTIMKMTERLIEKPDD 240 (398)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ------------------------------------------------------cccHHHHHHHHHhhhhhhhhccCCCC
Confidence 44555555556666666666677788
Q ss_pred HHHHHHHHHHHHHHhHhh----hcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHH
Q psy2427 497 LEARSHMHLASAMAGVGF----GNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPER 572 (660)
Q Consensus 497 ~~ar~~~~~as~~ag~~~----~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~ 572 (660)
.++|++|++++++++.+. +++++|.+|+++|+|++.| +++||.++++++|++++|+.+..+++
T Consensus 241 ~~ar~~l~~a~~~a~~~~~~~~~~~~~g~~H~l~h~l~~~~-------------~v~HG~~~ai~lp~v~~~~~~~~~~~ 307 (398)
T d1vlja_ 241 YEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALY-------------DIAHGAGLAIVFPAWMKYVYRKNPAQ 307 (398)
T ss_dssp HHHHHHHHHHHHHHTSSTTTTTSCSCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhcCcchhhhhccccccccc-------------CCCchhhcchhhHHHHHHHHHhChhH
Confidence 899999999999986533 5566889999999999975 79999999999999999999999999
Q ss_pred HHHHHH-HhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCC-------CCCCCCCccC
Q psy2427 573 HIEAAE-LLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQH-------RITKLAPREQ 644 (660)
Q Consensus 573 ~~~ia~-~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~-------~~~~~~P~~~ 644 (660)
+.++++ ++|... +..+.+..+++++++|++++|+|++|+|+|++++|++++++.++.+. .....+|+++
T Consensus 308 ~~~la~~l~~~~~---~~~e~~~~~~~~l~~~~~~lglP~~L~elGi~~~~i~~ia~~a~~~~~~~~npr~~~~~~~~~l 384 (398)
T d1vlja_ 308 FERFAKKIFGFEG---EGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVL 384 (398)
T ss_dssp HHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHTTCCCSTGGGTCCGGGHHHHHHHHHHHHHHTTGGGTCCSCSSSCC
T ss_pred HHHHHHHHhCCCC---ChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhChhhcCCCCcCcccccccC
Confidence 999997 556543 35677788899999999999999999999999999999999886432 2234577899
Q ss_pred CHHHHHHHHHHHhh
Q psy2427 645 SEEDLANLFENSMS 658 (660)
Q Consensus 645 t~e~i~~il~~a~~ 658 (660)
++||+++||++|++
T Consensus 385 ~~e~i~~Il~~A~~ 398 (398)
T d1vlja_ 385 EREDVREILKLAAK 398 (398)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhcC
Confidence 99999999999985
|
| >d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Hypothetical oxidoreductase yqhD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-62 Score=529.12 Aligned_cols=383 Identities=20% Similarity=0.276 Sum_probs=332.0
Q ss_pred CCCceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECcc-ccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHH
Q psy2427 18 PDKEYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPH-LSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSF 96 (660)
Q Consensus 18 ~~~~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~-~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v 96 (660)
.|..|+|.+| ++|+||.|++.+|+++++. + +|++||+++. +.+.+..+++.+.|+ +..+.+|++++++|+.+.|
T Consensus 3 ~m~~f~f~~P-~~I~fG~g~l~~l~~~~~~-~-~~vliV~~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v 77 (390)
T d1oj7a_ 3 GLNNFNLHTP-TRILFGKGAIAGLREQIPH-D-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETL 77 (390)
T ss_dssp CCCCEEEEEE-EEEEESTTGGGGHHHHSCT-T-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHH
T ss_pred CCCCcEEeCC-CeEEEccCHHHHHHHHHhC-C-CCEEEEECCchHHHccHHHHHHHHcC--CCcEEEEeCccCCCCHHHH
Confidence 5889999976 8999999999999999865 3 6999999987 456677899999995 7788999999999999999
Q ss_pred HHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceE
Q psy2427 97 LEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSI 176 (660)
Q Consensus 97 ~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~av 176 (660)
+++++.+++.++|+||||||||++|+||+++.++.+++ +.+++.... .+.+...+.+|+|+||||+|||||+|++++
T Consensus 78 ~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~-~~~~~~~~~--~~~~~~~~~~P~i~VPTtagtgse~t~~av 154 (390)
T d1oj7a_ 78 MNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPE-NIDPWHILQ--TGGKEIKSAIPMGCVLTLPATGSESNAGAV 154 (390)
T ss_dssp HHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCT-TSCTTHHHH--TTTTTCCCCCCEEEEESSCSSCGGGSSEEE
T ss_pred HHHHHHHhhcCCCEEEecCCCccccHHHHHHHHhcCCc-ccchhhhhc--ccccccccCCCccccccccccccccccccc
Confidence 99999999999999999999999999999999988653 333332111 122344566999999999999999999999
Q ss_pred EeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHH
Q psy2427 177 FDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVS 256 (660)
Q Consensus 177 i~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s 256 (660)
+++..++.|.++.++.++|+.+|+||+++.++|++++++|++|+|+|++|+|++. ...
T Consensus 155 i~~~~~~~k~~~~~~~~~P~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~------------------~~~---- 212 (390)
T d1oj7a_ 155 ISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTK------------------PVD---- 212 (390)
T ss_dssp EEETTTTEEEEEECGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHHSSS------------------CBC----
T ss_pred cccccccceeccchhhcccceeeehhhhcccCChhhhccchhhHHHHHHHHHhCC------------------ccc----
Confidence 9999999999999999999999999999999999999999999999999999872 011
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchh
Q psy2427 257 DVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGL 336 (660)
Q Consensus 257 ~~la~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~ 336 (660)
T Consensus 213 -------------------------------------------------------------------------------- 212 (390)
T d1oj7a_ 213 -------------------------------------------------------------------------------- 212 (390)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccc
Q psy2427 337 SVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLI 416 (660)
Q Consensus 337 avai~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~ 416 (660)
T Consensus 213 -------------------------------------------------------------------------------- 212 (390)
T d1oj7a_ 213 -------------------------------------------------------------------------------- 212 (390)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2427 417 DPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDD 496 (660)
Q Consensus 417 d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~ 496 (660)
.++++.+|+++++++.++++++++|++|
T Consensus 213 ----------------------------------------------------~~~~~~~a~~~~~~~~~~l~~a~~~~~d 240 (390)
T d1oj7a_ 213 ----------------------------------------------------AKIHDRFAEGILLTLIEDGPKALKEPEN 240 (390)
T ss_dssp ----------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ----------------------------------------------------hhhhhhHHhhhhhhhccccHHHHhhccc
Confidence 2344556667777777788888888899
Q ss_pred HHHHHHHHHHHHHHhHhhhccc---chhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHH
Q psy2427 497 LEARSHMHLASAMAGVGFGNAG---VHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERH 573 (660)
Q Consensus 497 ~~ar~~~~~as~~ag~~~~~~g---~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~ 573 (660)
+++|++|++|++++|+++.+.| +|.+|+|+|.|+..+ +++||.++++++|++++|+....++++
T Consensus 241 ~~ar~~l~~as~~a~~~~~~~g~~~~g~~Hal~h~l~~~~-------------~v~HG~~~ai~lp~v~~~~~~~~~~~~ 307 (390)
T d1oj7a_ 241 YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMH-------------GLDHAQTLAIVLPALWNEKRDTKRAKL 307 (390)
T ss_dssp HHHHHHHHHHHHHHSSSTTTTTSCCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCcccccccccccccccccc-------------CCcccccccccceeeehhhhhhhHHHH
Confidence 9999999999999999997765 579999999999874 799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHH
Q psy2427 574 IEAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLF 653 (660)
Q Consensus 574 ~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il 653 (660)
.++++.++...++ ++++++..+++++++|++++|+|++|+|+|+++++++++++.+..+.....+||+++|.|++++||
T Consensus 308 ~~~a~~~~~~~~~-~~~e~~~~~i~~i~~~~~~lglP~~L~e~Gv~~~~i~~la~~~~~~~~~~~~np~~l~~d~i~~il 386 (390)
T d1oj7a_ 308 LQYAERVWNITEG-SDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIY 386 (390)
T ss_dssp HHHHHHHHCCCCS-CHHHHHHHHHHHHHHHHHHHTCCCSGGGGTCCSTTHHHHHHHHHHTTCSSBTTTTCBCHHHHHHHH
T ss_pred HHHHHHhcCcccC-ChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhcchhhcCCCCCCCHHHHHHHH
Confidence 9999866543333 567788889999999999999999999999999999999999886655555789999999999999
Q ss_pred HHH
Q psy2427 654 ENS 656 (660)
Q Consensus 654 ~~a 656 (660)
++|
T Consensus 387 ~~A 389 (390)
T d1oj7a_ 387 EAA 389 (390)
T ss_dssp HHT
T ss_pred Hhc
Confidence 986
|
| >d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Alcohol dehydrogenase TM0920 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.6e-62 Score=518.84 Aligned_cols=356 Identities=24% Similarity=0.398 Sum_probs=308.2
Q ss_pred eeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccc-cccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 22 YAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHL-SKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 22 ~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
|+|..| ++|+||+|++++++++++++| +|++||+|+.. ...+..+++.+.|++.++.+.+|+++++||+.++|++++
T Consensus 2 f~f~~P-~~i~fG~g~l~~l~~~~~~~g-~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~p~~~~v~~~~ 79 (359)
T d1o2da_ 2 WEFYMP-TDVFFGEKILEKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAV 79 (359)
T ss_dssp CCCCCC-CEEEESTTHHHHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHH
T ss_pred eEcCCC-CEEEEeCCHHHHHHHHHHHcC-CeEEEEEcCcHHHHhhHHHHHHHHHHHcCCeEEEEcCccCCCCHHHHHHhh
Confidence 556664 899999999999999999998 89999998765 456778999999999999999999999999999999999
Q ss_pred HHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 101 KFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 101 ~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
+.+++.++|+||||||||++|+||+++..+.+++ +.+++.. +.....+.+|+|+||||+|||||+|+++|+++.
T Consensus 80 ~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~-~~~~~~~-----~~~~~~~~~p~i~IPTt~gtgse~t~~avi~~~ 153 (359)
T d1o2da_ 80 ERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKD-LSVEDLY-----DREKVKHWLPVVEIPTTAGTGSEVTPYSILTDP 153 (359)
T ss_dssp HHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTT-CCSGGGG-----CGGGCCCCCCEEEEECSSCCCGGGCCEEEEECT
T ss_pred hhccccCCceEEecccccchhHHHHHHHHHhCCC-Cchhhcc-----CcccccCCCCeEEeccccccchhccchhhhhhH
Confidence 9999999999999999999999999999988763 3444442 122334569999999999999999999999987
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
+++.| . ++..+|+.+|+||+++.++|++++++|++|+|+|++|+|++ ...+|+++.++
T Consensus 154 ~~~~k-~--~~~~~P~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s-------------------~~~~~~~~~~a 211 (359)
T d1o2da_ 154 EGNKR-G--CTLMFPVYAFLDPRYTYSMSDELTLSTGVDALSHAVEGYLS-------------------RKSTPPSDALA 211 (359)
T ss_dssp TSCEE-E--EECCCCSEEEECGGGGGGCCHHHHHHHHHHHHHHHHHHHHS-------------------TTCCHHHHHHH
T ss_pred hhccc-c--cccCCCCeEEeeHhhhcCcchhhhhhhhhHHHHHHHHHhhc-------------------cccchhhhHHH
Confidence 76554 3 24578999999999999999999999999999999999998 35566666666
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
.++++++.+++++
T Consensus 212 ~~ai~~~~~~l~~------------------------------------------------------------------- 224 (359)
T d1o2da_ 212 IEAMKIIHRNLPK------------------------------------------------------------------- 224 (359)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhh-------------------------------------------------------------------
Confidence 6666655555544
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 225 -------------------------------------------------------------------------------- 224 (359)
T d1o2da_ 225 -------------------------------------------------------------------------------- 224 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEAR 500 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar 500 (660)
+++| |.++|
T Consensus 225 ---------------------------------------------------------------------~~~~--~~~a~ 233 (359)
T d1o2da_ 225 ---------------------------------------------------------------------AIEG--NREAR 233 (359)
T ss_dssp ---------------------------------------------------------------------HHTT--CHHHH
T ss_pred ---------------------------------------------------------------------hhhc--cHHHH
Confidence 3332 56789
Q ss_pred HHHHHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHh
Q psy2427 501 SHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELL 580 (660)
Q Consensus 501 ~~~~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~l 580 (660)
++|+++++++|++++++|+|++|+|+|+|++.| +++||+++|+++|+||+||.+..++|+.+++++|
T Consensus 234 ~~l~~as~~~g~a~~~~g~g~~Hai~h~l~~~~-------------~i~HG~~~ai~lp~v~~~~~~~~~ek~~~ia~~l 300 (359)
T d1o2da_ 234 KKMFVASCLAGMVIAQTGTTLAHALGYPLTTEK-------------GIKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIF 300 (359)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccCCcccccccccchhhhc-------------CCCcchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999875 7999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHHhh
Q psy2427 581 GADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENSMS 658 (660)
Q Consensus 581 g~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a~~ 658 (660)
|. .+++|++++|+|++ +|++++|++++++.++.+ ....+||+++|+||+++||++|+-
T Consensus 301 g~----------------~~~~~~~~lglp~~---lg~~~~~i~~~~~~a~~~-~~~~~np~~~t~e~i~~il~~alg 358 (359)
T d1o2da_ 301 GG----------------SLLKFLKELGLYEK---VAVSSEELEKWVEKGSRA-KHLKNTPGTFTPEKIRNIYREALG 358 (359)
T ss_dssp TT----------------CHHHHHHHTTCCCC---CCCCHHHHHHHHHHHTTC-GGGGGSSSCCCHHHHHHHHHHHHC
T ss_pred HH----------------HHHHHHHHcCCccc---cCCCHHHHHHHHHHHHhC-chhcCCCccCCHHHHHHHHHHHcc
Confidence 73 47899999999965 599999999999999865 556899999999999999999873
|
| >d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=2e-50 Score=432.32 Aligned_cols=345 Identities=16% Similarity=0.161 Sum_probs=276.1
Q ss_pred ceeEEeccceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHH
Q psy2427 21 EYAFEMASSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEAT 100 (660)
Q Consensus 21 ~~~~~~~~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~ 100 (660)
++.|.. |++|+||.|++++++++++++| +|++||||+.+.+.. .+++.+.|++.++.+. +..+.++|+.++|+++.
T Consensus 3 ~~~f~~-P~~~~~G~gal~~l~~~l~~~g-~r~lvvtd~~~~~~~-~~~l~~~L~~~~i~~~-~~~~~~~p~~~~v~~~~ 78 (366)
T d1jq5a_ 3 ERVFIS-PAKYVQGKNVITKIANYLEGIG-NKTVVIADEIVWKIA-GHTIVNELKKGNIAAE-EVVFSGEASRNEVERIA 78 (366)
T ss_dssp CBCCCC-CSEEEEETTGGGGHHHHHTTTC-SEEEEEECHHHHHHT-HHHHHHHHHTTTCEEE-EEECCSSCBHHHHHHHH
T ss_pred CcEEeC-CceEEEecCHHHHHHHHHHHcC-CeEEEEECCcHHHHH-HHHHHHHHHHCCCeEE-EEEeCCCCCHHHHHHHH
Confidence 445565 4899999999999999999999 999999999987764 4899999999999875 44678899999999999
Q ss_pred HHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeC
Q psy2427 101 KFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYE 180 (660)
Q Consensus 101 ~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~ 180 (660)
+.+++.++|+||||||||++|+||++|.... +|+|+||||+|||||+|++++++++
T Consensus 79 ~~~~~~~~D~IiavGGGs~iD~aK~iA~~~~------------------------~p~i~IPTT~gtgse~t~~avi~~~ 134 (366)
T d1jq5a_ 79 NIARKAEAAIVIGVGGGKTLDTAKAVADELD------------------------AYIVIVPTAASTDAPTSALSVIYSD 134 (366)
T ss_dssp HHHHHTTCSEEEEEESHHHHHHHHHHHHHHT------------------------CEEEEEESSCCSSCTTCSEEEEECT
T ss_pred HHhhccCCcEEEEecCCccccchheeeeccc------------------------ceeeehhhhhhhhhccccccccccc
Confidence 9999999999999999999999999997664 8999999999999999999999865
Q ss_pred CCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 181 PLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 181 ~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
.+.|+.+..+..+|+++|+||+++.++|++++++|++|+|+|++|+|++...
T Consensus 135 -~~~~~~~~~~~~~P~~vi~Dp~l~~tlP~~~~~sg~~Dal~h~~E~~~~~~~--------------------------- 186 (366)
T d1jq5a_ 135 -DGVFESYRFYKKNPDLVLVDTKIIANAPPRLLASGIADALATWVEARSVIKS--------------------------- 186 (366)
T ss_dssp -TSCEEEEEECSSCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred -cCceeecccccccCCEEEEEccchhhchHHHHHHhHHHHHHHHHHHHHHHhc---------------------------
Confidence 5667777778888999999999999999999999999999999999976200
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
++. +..
T Consensus 187 ----------------~~~----------------------------------~~~------------------------ 192 (366)
T d1jq5a_ 187 ----------------GGK----------------------------------TMA------------------------ 192 (366)
T ss_dssp ----------------TCC----------------------------------CTT------------------------
T ss_pred ----------------ccc----------------------------------ccc------------------------
Confidence 000 000
Q ss_pred hHHHHHHhhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCcccccccccc
Q psy2427 341 SAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLH 420 (660)
Q Consensus 341 ~l~~~l~~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~ 420 (660)
T Consensus 193 -------------------------------------------------------------------------------- 192 (366)
T d1jq5a_ 193 -------------------------------------------------------------------------------- 192 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCC---CH
Q psy2427 421 TLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQD---DL 497 (660)
Q Consensus 421 ~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~---~~ 497 (660)
....+...+.+++.+.+.+.++++.+..++. ..
T Consensus 193 --------------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 228 (366)
T d1jq5a_ 193 --------------------------------------------GGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVT 228 (366)
T ss_dssp --------------------------------------------SSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred --------------------------------------------chhhHHHHHHHHHHHHHHHHHhhHHHhhhHhhhhhH
Confidence 0012234566677777777777776654432 34
Q ss_pred HHHHHH-HHHHHHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccc--cchHHHHHHhccCCHHHHH
Q psy2427 498 EARSHM-HLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVV--MSAPAVFNFTAASSPERHI 574 (660)
Q Consensus 498 ~ar~~~-~~as~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~--illp~~l~~~~~~~~~~~~ 574 (660)
+++..+ ..+++++|+++++++++++|+|+|.|+... +..++++||+.++ ++++..++++
T Consensus 229 ~~~~~~~~~~~~~~g~~~~~~~~~~~H~i~h~l~~~~---------g~~~~~~HG~~va~g~~~~~~l~~~--------- 290 (366)
T d1jq5a_ 229 PALEAVVEANTLLSGLGFESGGLAAAHAIHNGFTALE---------GEIHHLTHGEKVAFGTLVQLALEEH--------- 290 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHGGGSC---------SGGGGSCHHHHHHHHHHHHHHHSCC---------
T ss_pred HHHHHHHHHHHHhhcccccCCCcccccccchhhHhhc---------CCccCcCcchHHHHHHHHHHHHhcC---------
Confidence 455544 455678999999999999999999998753 1223699996665 4444433211
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCCCC---CcHHHHHHhhccCCCCCCCCCccCCHHHHHH
Q psy2427 575 EAAELLGADVSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGYTS---ADIPALVTGTLPQHRITKLAPREQSEEDLAN 651 (660)
Q Consensus 575 ~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi~~---~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~ 651 (660)
. .+.++++.+|++++|+|++|+|+|+++ ++++++++.++.+ ....+||+++|+||+++
T Consensus 291 -------------~-----~~~~~~~~~l~~~lglP~~L~dlgi~~~~~~~l~~ia~~a~~~-~~~~~nP~~~t~edi~~ 351 (366)
T d1jq5a_ 291 -------------S-----QQEIERYIELYLCLDLPVTLEDIKLKDASREDILKVAKAATAE-GETIHNAFNVTADDVAD 351 (366)
T ss_dssp -------------C-----HHHHHHHHHHHHHTTCCCSTTTTTCTTCCHHHHHHHHHHHTST-TCGGGGTCCCCHHHHHH
T ss_pred -------------C-----HHHHHHHHHHHHHcCCCCCHHHcCCCCCCHHHHHHHHHHHhhC-CcccCCCCCCCHHHHHH
Confidence 1 113678999999999999999999985 5688899999865 44567999999999999
Q ss_pred HHHHH
Q psy2427 652 LFENS 656 (660)
Q Consensus 652 il~~a 656 (660)
+|+++
T Consensus 352 il~~a 356 (366)
T d1jq5a_ 352 AIFAA 356 (366)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
|
| >d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.9e-50 Score=427.94 Aligned_cols=339 Identities=17% Similarity=0.219 Sum_probs=269.1
Q ss_pred cceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcC
Q psy2427 28 SSTIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQ 107 (660)
Q Consensus 28 ~~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 107 (660)
|+||+||.|++++|+++++++| +|++||+|+++.+.++.+++.+.|++.++.+.+|+++.++ ++++++ ..+++.+
T Consensus 9 P~rii~G~gal~~l~~~l~~~g-~r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~v~~~~~~~---~~i~~~-~~~~~~~ 83 (364)
T d1kq3a_ 9 PGRYVQGAGAINILEEELSRFG-ERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFGGECSD---EEIERL-SGLVEEE 83 (364)
T ss_dssp CSEEEEETTGGGGHHHHHHTTC-SEEEEEECHHHHHHTTCTTGGGGCSSSEEEEEECCSSCBH---HHHHHH-HTTCCTT
T ss_pred CCCEEEecCHHHHHHHHHHHcC-CeEEEEECCchhhhHHHHHHHHHHHhcCCeEEecCCCCCc---HHHHHH-HHHhhcc
Confidence 6999999999999999999998 8999999998877667799999999999998888875544 445543 4456789
Q ss_pred CCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcCccccCceEEeeCCCCceee
Q psy2427 108 CDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTGSETTGVSIFDYEPLKAKTG 187 (660)
Q Consensus 108 ~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtgse~s~~avi~~~~~~~K~~ 187 (660)
+|+||||||||++|+||++|.... +|+|+||||+|||||+|++++++++.++.|..
T Consensus 84 ~D~IIavGGGs~~D~aK~ia~~~~------------------------~P~I~IPTTa~tgse~t~~avi~~~~~~~k~~ 139 (364)
T d1kq3a_ 84 TDVVVGIGGGKTLDTAKAVAYKLK------------------------KPVVIVPTIASTDAPCSALSVIYTPNGEFKRY 139 (364)
T ss_dssp CCEEEEEESHHHHHHHHHHHHHTT------------------------CCEEEEESSCCCSCTTSSEEEEECTTSCEEEE
T ss_pred CcEEEEeccCccceeecccccccc------------------------ccceeeccccccccccccceEEeeccCCccce
Confidence 999999999999999999997664 89999999999999999999999988777877
Q ss_pred eecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy2427 188 IANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTI 267 (660)
Q Consensus 188 ~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la~~ai~~i 267 (660)
+.++ .+|+++|+||+++.++|++++++|++|+|+|++|+|++...... ...+++.+
T Consensus 140 ~~~~-~~P~~viiDp~l~~t~P~~~~~~~~~Dal~h~~E~~~~~~~~~~-------------~~~~~~~~---------- 195 (364)
T d1kq3a_ 140 LFLP-RNPDVVLVDTEIVAKAPARFLVAGMGDALATWFEAESCKQKYAP-------------NMTGRLGS---------- 195 (364)
T ss_dssp EECS-SCCSEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCB-------------CTTSSBCC----------
T ss_pred eecc-cccceEEECchhhhhhhHHHHhhhHHHHhhhHHHHhhhhhhcch-------------hhhhhhhh----------
Confidence 7766 57999999999999999999999999999999999976200000 00000111
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHH
Q psy2427 268 RQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFN 347 (660)
Q Consensus 268 ~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~ 347 (660)
T Consensus 196 -------------------------------------------------------------------------------- 195 (364)
T d1kq3a_ 196 -------------------------------------------------------------------------------- 195 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCchhhhhHhhhhccccccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCch
Q psy2427 348 FTAASSPERHIEAAELLGADVSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPER 427 (660)
Q Consensus 348 ~~~~~~~er~~~la~~lg~~~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~ 427 (660)
T Consensus 196 -------------------------------------------------------------------------------- 195 (364)
T d1kq3a_ 196 -------------------------------------------------------------------------------- 195 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhHHHHHHHHhcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHH---HHHHHHhcCCCCHHHHHHHH
Q psy2427 428 VTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIR---QYFKRAVYNQDDLEARSHMH 504 (660)
Q Consensus 428 ~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~---~~l~~~~~~~~~~~ar~~~~ 504 (660)
.....+++.+.+.+. ....+.+.++.+.++|++++
T Consensus 196 ------------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~ 233 (364)
T d1kq3a_ 196 ------------------------------------------MTAYALARLCYETLLEYGVLAKRSVEEKSVTPALEKIV 233 (364)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred ------------------------------------------hhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 111122222222222 22345667889999999999
Q ss_pred HHH-HHHhHhhhcccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCC
Q psy2427 505 LAS-AMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGAD 583 (660)
Q Consensus 505 ~as-~~ag~~~~~~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~ 583 (660)
+++ .++|+++.++|.+++|+++|.++.++. .++++||+.+++.++..+....
T Consensus 234 ~~~~~~~g~~~~~~~~~~~H~~~~~~~~~~~----------~~~~~HG~~va~~~~~~~~~~~----------------- 286 (364)
T d1kq3a_ 234 EANTLLSGLGFESGGLAAAHAIHNGLTVLEN----------THKYLHGEKVAIGVLASLFLTD----------------- 286 (364)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHTTSGG----------GTTSCHHHHHHHHHHHHHHHTT-----------------
T ss_pred HHHHHHhhcccccccccccccccchhhhhcC----------cccccccHHHHHHHHHHHHhcc-----------------
Confidence 885 579999999999999999999987642 1258899888865544332211
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCcccccCC---CCCcHHHHHHhhccCCCCCCCCCccCCHHHHHHHHHHH
Q psy2427 584 VSRVKKADAGKLLADTVRGYMDQMKIENGLKVLGY---TSADIPALVTGTLPQHRITKLAPREQSEEDLANLFENS 656 (660)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~l~~~lglp~~L~elGi---~~~~i~~ia~~a~~~~~~~~~~P~~~t~e~i~~il~~a 656 (660)
.+.++++++++|++++|+|++|+|+|+ ++++++++++.++.+.+...+||+++|+||+++||++|
T Consensus 287 --------~~~~~~~~i~~l~~~lglP~~L~elGi~~~~~~~l~~ia~~a~~~~~~~~~~P~~~t~edi~~il~~A 354 (364)
T d1kq3a_ 287 --------KPRKMIEEVYSFCEEVGLPTTLAEIGLDGVSDEDLMKVAEKACDKNETIHNEPQPVTSKDVFFALKAA 354 (364)
T ss_dssp --------CCHHHHHHHHHHHHHHTCCCSGGGGTCTTCCHHHHHHHHHHHTCTTSGGGGSSSCCCHHHHHHHHHHH
T ss_pred --------cHHHHHHHHHHHHHHcCCCCCHHHhCCCCCCHHHHHHHHHHHHhCCCcccCCCcCCCHHHHHHHHHHH
Confidence 112357899999999999999999996 47889999999997777778899999999999999976
|
| >d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Dehydroquinate synthase, DHQS domain: Dehydroquinate synthase, DHQS species: Aspergillus nidulans [TaxId: 162425]
Probab=99.95 E-value=1e-27 Score=255.83 Aligned_cols=278 Identities=19% Similarity=0.149 Sum_probs=194.1
Q ss_pred ceEEECcChHHH-HH-HHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCe--------EEEEeCcccCCCHHHHHH
Q psy2427 29 STIRIGPGVTRE-VG-MDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVK--------FELFDKVRVEPTGDSFLE 98 (660)
Q Consensus 29 ~~i~~G~g~~~~-l~-~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~--------~~~~~~~~~~p~~~~v~~ 98 (660)
..|++|.|.+.. ++ +.+..++.++++||+|+++++. +.+++.+.|++.+++ +..+...|.+++.+.+.+
T Consensus 10 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~ivtD~~v~~l-~~~~v~~~l~~~~~~~~~~~~~~~~~~~~gE~~Ks~~~~~~ 88 (389)
T d1sg6a_ 10 ESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKAD 88 (389)
T ss_dssp EEEEEETTHHHHTHHHHHHHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHH
T ss_pred ccEEECCCcHHHHhHHHHHhcCCCCcEEEEECCchHHH-HHHHHHHHHHHhCcccccCcceEEEEecCCcccCCHHHHHH
Confidence 468899998765 44 4455567799999999999887 668899999876543 345677788999999999
Q ss_pred HHHHhHhcC--C---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccc
Q psy2427 99 ATKFVRSVQ--C---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSET 171 (660)
Q Consensus 99 ~~~~~~~~~--~---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~ 171 (660)
+.+.+.+++ + |+|||||||+++|+||++|..+.++ +|+|.||||+ ..++.+
T Consensus 89 i~~~~~~~~~~~~r~d~IiaiGGG~v~D~ak~~A~~y~rg----------------------i~~i~vPTtlla~~Das~ 146 (389)
T d1sg6a_ 89 IEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYMRG----------------------VRYVQVPTTLLAMVDSSI 146 (389)
T ss_dssp HHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGGGC----------------------CEEEEEECSHHHHHTTTS
T ss_pred HHHHHHhcCCCcCCCceEEEeccchHHHHHHHHHHHHhcC----------------------CceeEeccchhccccccc
Confidence 999998776 3 7999999999999999999999876 9999999994 568889
Q ss_pred cCceEEeeCCCCceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCC
Q psy2427 172 TGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTERTPCPTDPLLRPAYQG 251 (660)
Q Consensus 172 s~~avi~~~~~~~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~~~s~~~~~~~~~~~~~~~~~~~~~ 251 (660)
++...++....+...+.+ ..|..|++|++++.++|+|++++|++|+++|+++.-+.
T Consensus 147 g~k~~in~~~~kn~~g~~---~~P~~V~iD~~~l~tlP~r~~~aG~~e~ik~~~~~d~~--------------------- 202 (389)
T d1sg6a_ 147 GGKTAIDTPLGKNLIGAI---WQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEE--------------------- 202 (389)
T ss_dssp SCEEEEEETTEEEEEEEE---CCCSEEEEEGGGGGTSCHHHHHHHHHHHHHHHHTTCHH---------------------
T ss_pred cceeeeccccccceeeec---chhhhhhhhhhhhcchHHHHHHhhhhhhhhhhhccCHH---------------------
Confidence 999988765333223333 34999999999999999999999999999998754322
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhhh---------hccCCccccccccccCCCcc
Q psy2427 252 QNPVSDVWARFALQTIRQYFKRAVYN-----QDDLEARSHMHLASAMAGVG---------FGNAGVHLCHGLSYPISGNV 317 (660)
Q Consensus 252 ~~~~s~~la~~ai~~i~~~l~~~~~d-----~~~~~ar~~l~~as~laG~a---------~~~~g~~~~H~i~h~l~~~~ 317 (660)
+.+.+.... ..+.......... ..+.+..+++...+...... .....++++|+++|+|+...
T Consensus 203 ---l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~I~~s~~~k~~iv~~d~~e~g~r~~ln~GHt~~HAlE~~~ 278 (389)
T d1sg6a_ 203 ---EFTALEENA-ETILKAVRREVTPGEHRFEGTEEILKARILASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAIL 278 (389)
T ss_dssp ---HHHHHHHHH-HHHHHHHHCCCCTTSCTTGGGHHHHHHHHHHHHHHHHHHHHC-----CGGGGGGTTHHHHHHHHHHH
T ss_pred ---HHHHHHHhH-HHHHHhhhhhccchhhhhcccHHHHHHHHHHHHHHhhhccccchhhccccchhhhhhhHHHHHHhhh
Confidence 222222222 1122222111111 01223333333322221111 01112557888888888653
Q ss_pred cccCCCCCCCCCCCcCchhHHHhhHHHHHHhhhc------CCchhhhhHhhhhcccc
Q psy2427 318 KTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAA------SSPERHIEAAELLGADV 368 (660)
Q Consensus 318 ~~~~~~~~~~~~~~~~HG~avai~l~~~l~~~~~------~~~er~~~la~~lg~~~ 368 (660)
. +.++||++||++|...+.+... ...+++.++.+.+|+|.
T Consensus 279 ~-----------~~~lHGEaVaiGml~~~~ls~~~g~l~~~~~~~i~~~l~~lgLPt 324 (389)
T d1sg6a_ 279 T-----------PQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPT 324 (389)
T ss_dssp T-----------TTSCHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCCC
T ss_pred h-----------hhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Confidence 2 2399999999999988876543 24577777778888753
|
| >d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Dehydroquinate synthase, DHQS domain: Dehydroquinate synthase, DHQS species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=6.6e-27 Score=246.25 Aligned_cols=260 Identities=15% Similarity=0.125 Sum_probs=185.9
Q ss_pred ceEEECcChHHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCC
Q psy2427 29 STIRIGPGVTREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQC 108 (660)
Q Consensus 29 ~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 108 (660)
..|++|+|.++++++. . +|++||+|+++.. +.+++.+.+... .+.+++..|.+++.+.++++.+.+.+.++
T Consensus 12 Y~I~IG~glL~~l~~~----~-~k~~iV~D~~V~~--~~~~~~~~l~~~--~i~~i~~gE~~Ksl~~~~~i~~~l~~~~~ 82 (347)
T d1ujna_ 12 YPILVGEGVLKEVPPL----A-GPAALLFDRRVEG--FAQEVAKALGVR--HLLGLPGGEAAKSLEVYGKVLSWLAEKGL 82 (347)
T ss_dssp EEEEEESCGGGGSCCC----S-SCEEEEEEGGGHH--HHHHHHHHHTCC--CEEEECCSGGGSSHHHHHHHHHHHHHHTC
T ss_pred ceEEECcCHHHHhHHH----h-CCEEEEECccHHH--HHHHHHHhcCCc--eEEEECCCcccCCHHHHHHHHHHHHHhhc
Confidence 5789999999886543 2 6899999999865 347788888654 45678889999999999999999988777
Q ss_pred ---CEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCC--CcCccccCceEEeeCCCC
Q psy2427 109 ---DAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTS--GTGSETTGVSIFDYEPLK 183 (660)
Q Consensus 109 ---D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~--gtgse~s~~avi~~~~~~ 183 (660)
|+|||||||+++|+||++|..+.+| +|+|.||||+ ..+|.+++...++....+
T Consensus 83 ~r~~~iiaiGGG~v~D~agf~A~~y~rg----------------------i~~i~vPTtlla~vDs~~g~k~~in~~~~k 140 (347)
T d1ujna_ 83 PRNATLLVVGGGTLTDLGGFVAATYLRG----------------------VAYLAFPTTTLAIVDASVGGKTGINLPEGK 140 (347)
T ss_dssp CTTCEEEEEESHHHHHHHHHHHHHBTTC----------------------CEEEEEECSHHHHHTTTSSCEEEEEETTEE
T ss_pred ccccceeEeechhhhhHHHHHhhhhcCC----------------------cceeeccchhhhcccccccccccccccccc
Confidence 7999999999999999999999887 9999999996 558999999998766544
Q ss_pred ceeeeecCCCCccEEEEcCCcCCCCCHHHHHHhhHHHHHHHHHH---hhcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy2427 184 AKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALES---FTALPYTERTPCPTDPLLRPAYQGQNPVSDVWA 260 (660)
Q Consensus 184 ~K~~~~~~~~~P~~viiDp~l~~tlP~~~~~~g~~Dal~haiE~---~~s~~~~~~~~~~~~~~~~~~~~~~~~~s~~la 260 (660)
...+.++ .|..|++||+++.++|++++++|.+|++++++.. ++... .. .....+..+.+.
T Consensus 141 n~~g~f~---~P~~v~~D~~~l~tlp~r~~~sG~~Eiik~~~i~~~~~~~~~----~~----------~~~~~~~~~~~i 203 (347)
T d1ujna_ 141 NLVGAFH---FPQGVYAELRALKTLPLPTFKEGLVEAFKHGLIAGDEALLKV----ED----------LTPQSPRLEAFL 203 (347)
T ss_dssp EEEEEEC---CCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHHTCGGGGCC----TT----------CCTTCTTHHHHH
T ss_pred ccccccc---CCCeeeccHHHHHhhhHHHHHHHHHHHHHHhhccCHHHHHhh----hh----------hcccchHHHHHH
Confidence 4444444 4999999999999999999999999999999854 22210 00 011222233344
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHh
Q psy2427 261 RFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVM 340 (660)
Q Consensus 261 ~~ai~~i~~~l~~~~~d~~~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai 340 (660)
..+++.-.+.. ..|+.+...|. . ++++|.++|+|+... ++.++||++|++
T Consensus 204 ~~s~~~k~~~v---~~d~~E~g~R~------------~----ln~GHt~gHAlE~~~-----------~~~l~HGeaVai 253 (347)
T d1ujna_ 204 ARAVAVKVRVT---EEDPLEKGKRR------------L----LNLGHTLGHALEAQT-----------RHALPHGMAVAY 253 (347)
T ss_dssp HHHHHHHHHHH---HHCTTSSSGGG------------G----GGTTHHHHHHHHHHT-----------TTCSCHHHHHHH
T ss_pred HHHHHHhhhhh---hhchhhccchh------------h----ccccchhHHHHHhhc-----------ccchhHHHHHHH
Confidence 44444333333 33444332222 2 334555566555432 124999999999
Q ss_pred hHHHHHHhhhc----CCchhhhhHhhhhcc
Q psy2427 341 SAPAVFNFTAA----SSPERHIEAAELLGA 366 (660)
Q Consensus 341 ~l~~~l~~~~~----~~~er~~~la~~lg~ 366 (660)
+|.....+... ...+++.++...++.
T Consensus 254 Gm~~~~~ls~~lg~~~~~~~~~~l~~~~~~ 283 (347)
T d1ujna_ 254 GLLYAALLGRALGGEDLLPPVRRLLLWLSP 283 (347)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHhcCC
Confidence 99877665432 244566666666664
|
| >d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Lactaldehyde reductase FucO species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=4.6e-18 Score=181.13 Aligned_cols=99 Identities=24% Similarity=0.277 Sum_probs=95.3
Q ss_pred cccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCC
Q psy2427 370 RVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPY 449 (660)
Q Consensus 370 ~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~ 449 (660)
+.+|+|+||||+|||||+|+++|+++++.+.|..+.++.++|+++|+||+++.++|++++++|++|||+|++|+|++.
T Consensus 130 ~~lP~i~IPTtagTgse~t~~avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~h~~E~~~s~-- 207 (385)
T d1rrma_ 130 PSVPILAIPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYITR-- 207 (385)
T ss_dssp CCSCEEEEECSSSCCTTTCSEEEEEETTTTEEEEEECGGGCCSEEEECGGGTTTSCHHHHHHHHHHHHHHHHHHHHST--
T ss_pred CCCceEecccccccccccccccccccccccceeeeeeeecccccccchHHHhcCCChheeeechhhhhhhccchhhcc--
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHH
Q psy2427 450 TERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYF 487 (660)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l 487 (660)
..+|+++.+|+++++++.+++
T Consensus 208 -----------------~~~p~~~~~a~~a~~~~~~~l 228 (385)
T d1rrma_ 208 -----------------GAWALTDALHIKAIEIIAGAL 228 (385)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------cccccchHHHHHHHHHHHHhh
Confidence 789999999999999998886
|
| >d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Hypothetical oxidoreductase yqhD species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=2e-14 Score=152.62 Aligned_cols=80 Identities=24% Similarity=0.407 Sum_probs=76.3
Q ss_pred cccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 368 VSRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 368 ~~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
..+.+|+|+||||++||||+|+++|+++.+.+.|..+.++.++|+.+|+||+++.++|++++++|++|||+||+|+|++.
T Consensus 130 ~~~~~P~i~VPTtagtgse~t~~avi~~~~~~~k~~~~~~~~~P~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~ 209 (390)
T d1oj7a_ 130 IKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTK 209 (390)
T ss_dssp CCCCCCEEEEESSCSSCGGGSSEEEEEETTTTEEEEEECGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cccCCCccccccccccccccccccccccccccceeccchhhcccceeeehhhhcccCChhhhccchhhHHHHHHHHHhCC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999983
|
| >d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.43 E-value=9.9e-15 Score=153.93 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=83.3
Q ss_pred ccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCCC
Q psy2427 371 VKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYT 450 (660)
Q Consensus 371 ~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~ 450 (660)
.+|.|+||||++||||+|+.+|++++ .+.|+.+......|+++|+||+++.++|++++++|++|||+|++|+|.+..
T Consensus 109 ~~p~i~IPTT~gtgse~t~~avi~~~-~~~~~~~~~~~~~P~~vi~Dp~l~~tlP~~~~~sg~~Dal~h~~E~~~~~~-- 185 (366)
T d1jq5a_ 109 DAYIVIVPTAASTDAPTSALSVIYSD-DGVFESYRFYKKNPDLVLVDTKIIANAPPRLLASGIADALATWVEARSVIK-- 185 (366)
T ss_dssp TCEEEEEESSCCSSCTTCSEEEEECT-TSCEEEEEECSSCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cceeeehhhhhhhhhccccccccccc-cCceeecccccccCCEEEEEccchhhchHHHHHHhHHHHHHHHHHHHHHHh--
Confidence 37899999999999999999999876 466667777788899999999999999999999999999999999998741
Q ss_pred CCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHh
Q psy2427 451 ERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAV 491 (660)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~ 491 (660)
....+..+.+...+.+.+.+.+.+.+
T Consensus 186 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~l 211 (366)
T d1jq5a_ 186 ---------------SGGKTMAGGIPTIAAEAIAEKCEQTL 211 (366)
T ss_dssp ---------------HTCCCTTSSBCCHHHHHHHHHHHHHH
T ss_pred ---------------cccccccchhhHHHHHHHHHHHHHHH
Confidence 13334444455555666666666554
|
| >d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: NADH-dependent butanol dehydrogenase A (TM0820) species: Thermotoga maritima [TaxId: 2336]
Probab=99.38 E-value=1.2e-13 Score=147.05 Aligned_cols=79 Identities=32% Similarity=0.482 Sum_probs=76.4
Q ss_pred ccccccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 369 SRVKKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 369 ~~~~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
.+.+|+|+||||+|||||+|+++|+++++.+.|..+.++.++|+++|+||+++.++|+++++++++|||+||+|+|++.
T Consensus 132 ~~~~P~i~iPTt~gtgse~t~~avi~~~~~~~K~~~~~~~~~p~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~ 210 (398)
T d1vlja_ 132 EKALPIFDVLTISATGTEMNGNAVITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFDG 210 (398)
T ss_dssp CCCCCEEEEECSCSSCGGGSSEEEEEETTTTEEEEEECGGGSCSEEEECGGGGGGSCHHHHHHHHHHHHHHHHHHHTSS
T ss_pred cCCCCeeeeecccccceeccccceeeeccccccceeeeccccceeEEEehhhcCCCcchhhccchhhHHHHhhhhcccc
Confidence 4668999999999999999999999999999999999999999999999999999999999999999999999999995
|
| >d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=1.7e-13 Score=144.22 Aligned_cols=106 Identities=14% Similarity=0.016 Sum_probs=92.3
Q ss_pred cccccccccCCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcCCCCC
Q psy2427 372 KKADAVPTTSGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTALPYTE 451 (660)
Q Consensus 372 ~~~i~vPTt~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~~~~~ 451 (660)
+|+|+||||++||||+|+++|+++++.+.|..+..+ .+|+.+|+||+++.++|++++++|++|||+|++|+|.+.....
T Consensus 108 ~P~I~IPTTa~tgse~t~~avi~~~~~~~k~~~~~~-~~P~~viiDp~l~~t~P~~~~~~~~~Dal~h~~E~~~~~~~~~ 186 (364)
T d1kq3a_ 108 KPVVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLP-RNPDVVLVDTEIVAKAPARFLVAGMGDALATWFEAESCKQKYA 186 (364)
T ss_dssp CCEEEEESSCCCSCTTSSEEEEECTTSCEEEEEECS-SCCSEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccceeeccccccccccccceEEeeccCCccceeecc-cccceEEECchhhhhhhHHHHhhhHHHHhhhHHHHhhhhhhcc
Confidence 699999999999999999999999988888877766 4699999999999999999999999999999999997642111
Q ss_pred CCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHh
Q psy2427 452 RTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAV 491 (660)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~ 491 (660)
....+++++.++....+.+.+.+.+..
T Consensus 187 -------------~~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (364)
T d1kq3a_ 187 -------------PNMTGRLGSMTAYALARLCYETLLEYG 213 (364)
T ss_dssp -------------BCTTSSBCCHHHHHHHHHHHHHHHHHH
T ss_pred -------------hhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 125678999999999999999997653
|
| >d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Alcohol dehydrogenase TM0920 species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=5.3e-13 Score=139.97 Aligned_cols=88 Identities=27% Similarity=0.439 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHHhhhhccCCccccccccccCCCcccccCCCCCCCCCCCcCchhHHHhhHHHHHHhhhcCCchhhhh
Q psy2427 280 DLEARSHMHLASAMAGVGFGNAGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIE 359 (660)
Q Consensus 280 ~~~ar~~l~~as~laG~a~~~~g~~~~H~i~h~l~~~~~~~~~~~~~~~~~~~~HG~avai~l~~~l~~~~~~~~er~~~ 359 (660)
|.++|+++++|+.++|++++++|++++|+|+|+|++.++ ++||+++|+++|++++|+.+..++|+.+
T Consensus 229 ~~~a~~~l~~as~~~g~a~~~~g~g~~Hai~h~l~~~~~-------------i~HG~~~ai~lp~v~~~~~~~~~ek~~~ 295 (359)
T d1o2da_ 229 NREARKKMFVASCLAGMVIAQTGTTLAHALGYPLTTEKG-------------IKHGKATGMVLPFVMEVMKEEIPEKVDT 295 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhccCCcccccccccchhhhcC-------------CCcchhHHHHHHHHHHHHHHHhHHHHHH
Confidence 689999999999999999999999999999999998653 9999999999999999999999999999
Q ss_pred Hhhhhcccccccccccccccc
Q psy2427 360 AAELLGADVSRVKKADAVPTT 380 (660)
Q Consensus 360 la~~lg~~~~~~~~~i~vPTt 380 (660)
+++.++....+....+-+||-
T Consensus 296 ia~~lg~~~~~~~~~lglp~~ 316 (359)
T d1o2da_ 296 VNHIFGGSLLKFLKELGLYEK 316 (359)
T ss_dssp HHHHTTTCHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHcCCccc
Confidence 999988665555444556654
|
| >d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Dehydroquinate synthase, DHQS domain: Dehydroquinate synthase, DHQS species: Aspergillus nidulans [TaxId: 162425]
Probab=99.11 E-value=6.7e-11 Score=124.66 Aligned_cols=202 Identities=22% Similarity=0.125 Sum_probs=120.6
Q ss_pred ccccccccccc--CCCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHHhcC
Q psy2427 370 RVKKADAVPTT--SGTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESFTAL 447 (660)
Q Consensus 370 ~~~~~i~vPTt--~~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~~~~ 447 (660)
...|.|.|||| +..+|.+.....++.. +.|..+... ..|..+++|++++.++|+|.+++|..|++.|+++.-..
T Consensus 127 rgi~~i~vPTtlla~~Das~g~k~~in~~--~~kn~~g~~-~~P~~V~iD~~~l~tlP~r~~~aG~~e~ik~~~~~d~~- 202 (389)
T d1sg6a_ 127 RGVRYVQVPTTLLAMVDSSIGGKTAIDTP--LGKNLIGAI-WQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEE- 202 (389)
T ss_dssp GCCEEEEEECSHHHHHTTTSSCEEEEEET--TEEEEEEEE-CCCSEEEEEGGGGGTSCHHHHHHHHHHHHHHHHTTCHH-
T ss_pred cCCceeEeccchhccccccccceeeeccc--cccceeeec-chhhhhhhhhhhhcchHHHHHHhhhhhhhhhhhccCHH-
Confidence 35799999998 5668888888888765 334444322 24999999999999999999999999999988754221
Q ss_pred CCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhHhh------hc
Q psy2427 448 PYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYN-----QDDLEARSHMHLASAMAGVGF------GN 516 (660)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~-----~~~~~ar~~~~~as~~ag~~~------~~ 516 (660)
+.+.+ +.....+.+........ ..+.++.+++...+......+ ..
T Consensus 203 -----------------------l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~I~~s~~~k~~iv~~d~~e~ 258 (389)
T d1sg6a_ 203 -----------------------EFTAL-EENAETILKAVRREVTPGEHRFEGTEEILKARILASARHKAYVVSADEREG 258 (389)
T ss_dssp -----------------------HHHHH-HHHHHHHHHHHHCCCCTTSCTTGGGHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred -----------------------HHHHH-HHhHHHHHHhhhhhccchhhhhcccHHHHHHHHHHHHHHhhhccccchhhc
Confidence 11111 11111111111111111 112333344444443322211 11
Q ss_pred ---ccchhhhhhhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHH
Q psy2427 517 ---AGVHLCHGLSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAG 593 (660)
Q Consensus 517 ---~g~~~~H~l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~ 593 (660)
......|.++|.|.... ++.++||+.+|+-+...+ .+++.+|.- +.+
T Consensus 259 g~r~~ln~GHt~~HAlE~~~-----------~~~~lHGEaVaiGml~~~------------~ls~~~g~l----~~~--- 308 (389)
T d1sg6a_ 259 GLRNLLNWGHSIGHAIEAIL-----------TPQILHGECVAIGMVKEA------------ELARHLGIL----KGV--- 308 (389)
T ss_dssp CGGGGGGTTHHHHHHHHHHH-----------TTTSCHHHHHHHHHHHHH------------HHHHHTTCS----CHH---
T ss_pred cccchhhhhhhHHHHHHhhh-----------hhhhhHHHHHHHHHHHHH------------HHHHHhCCC----CHH---
Confidence 11446788888887653 126999987775443222 233444431 122
Q ss_pred HHHHHHHHHHHHHcCCCCcccccCCC------CCcHHHHHHhhc
Q psy2427 594 KLLADTVRGYMDQMKIENGLKVLGYT------SADIPALVTGTL 631 (660)
Q Consensus 594 ~~~~~~l~~l~~~lglp~~L~elGi~------~~~i~~ia~~a~ 631 (660)
..+++.++++++|+|++++++++. .-+++++.+...
T Consensus 309 --~~~~i~~~l~~lgLPt~l~dl~~~~~~~~~~~~~~~l~~~~~ 350 (389)
T d1sg6a_ 309 --AVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMA 350 (389)
T ss_dssp --HHHHHHHHHHHTTCCCSTTCHHHHHHTTTCCCCHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCccchhhhcccccccccCCHHHHHHHHh
Confidence 268899999999999999998652 345677766543
|
| >d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Dehydroquinate synthase, DHQS domain: Dehydroquinate synthase, DHQS species: Thermus thermophilus [TaxId: 274]
Probab=98.51 E-value=3.1e-07 Score=94.67 Aligned_cols=211 Identities=18% Similarity=0.110 Sum_probs=122.7
Q ss_pred cccccccccccC--CCCCcccceEEEeeCCCCceeeeeccCCCccccccccccccCCCchhhhhcchhhHHHHHHHH---
Q psy2427 370 RVKKADAVPTTS--GTGSETTGVSIFDYEPLKAKTGIANRALKPTLGLIDPLHTLSLPERVTAYSGFDVFCHALESF--- 444 (660)
Q Consensus 370 ~~~~~i~vPTt~--~tgse~t~~~v~~~~~~~~k~~~~~~~~~p~~~i~d~~~~~~~P~~~~~~~~~Dal~h~~E~~--- 444 (660)
...|++.||||. ..+|.+.....++....+...+.+. .|+.+++||+++.++|++.+.+|..|++.|++..-
T Consensus 109 rgi~~i~vPTtlla~vDs~~g~k~~in~~~~kn~~g~f~---~P~~v~~D~~~l~tlp~r~~~sG~~Eiik~~~i~~~~~ 185 (347)
T d1ujna_ 109 RGVAYLAFPTTTLAIVDASVGGKTGINLPEGKNLVGAFH---FPQGVYAELRALKTLPLPTFKEGLVEAFKHGLIAGDEA 185 (347)
T ss_dssp TCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEEEEEEC---CCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHHTCGG
T ss_pred CCcceeeccchhhhccccccccccccccccccccccccc---CCCeeeccHHHHHhhhHHHHHHHHHHHHHHhhccCHHH
Confidence 357999999985 5688888888887764333333333 49999999999999999999999999999999763
Q ss_pred hcCCCCCCCCCCCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhHhhhcccchhhhh
Q psy2427 445 TALPYTERTPCPTDPLLRPAYQGQNPVSDVWARFALQTIRQYFKRAVYNQDDLEARSHMHLASAMAGVGFGNAGVHLCHG 524 (660)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~~~~~~~~~~ar~~~~~as~~ag~~~~~~g~~~~H~ 524 (660)
+... .+. ....+....+...+++.-.+... .|+.+...| ..-|.|..++|+
T Consensus 186 ~~~~-~~~-------------~~~~~~~~~~i~~s~~~k~~~v~---~d~~E~g~R------------~~ln~GHt~gHA 236 (347)
T d1ujna_ 186 LLKV-EDL-------------TPQSPRLEAFLARAVAVKVRVTE---EDPLEKGKR------------RLLNLGHTLGHA 236 (347)
T ss_dssp GGCC-TTC-------------CTTCTTHHHHHHHHHHHHHHHHH---HCTTSSSGG------------GGGGTTHHHHHH
T ss_pred HHhh-hhh-------------cccchHHHHHHHHHHHHhhhhhh---hchhhccch------------hhccccchhHHH
Confidence 2211 000 12223344444444444443333 333332111 333556666677
Q ss_pred hhccccCCccccCCCCCCCCCCCCCcccccccchHHHHHHhccCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Q psy2427 525 LSYPISGNVKTFHPAGYSDDHPIIPHGLSVVMSAPAVFNFTAASSPERHIEAAELLGADVSRVKKADAGKLLADTVRGYM 604 (660)
Q Consensus 525 l~~~l~~~~~~~~~~~~~~~~~~~~HG~~~~illp~~l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~~~~~~~~~l~~l~ 604 (660)
++... . +.++||+++++-+-... .++..+|... . .+++++++
T Consensus 237 lE~~~-~--------------~~l~HGeaVaiGm~~~~------------~ls~~lg~~~----~-------~~~~~~l~ 278 (347)
T d1ujna_ 237 LEAQT-R--------------HALPHGMAVAYGLLYAA------------LLGRALGGED----L-------LPPVRRLL 278 (347)
T ss_dssp HHHHT-T--------------TCSCHHHHHHHHHHHHH------------HHHHHTTCCC----C-------HHHHHHHH
T ss_pred HHhhc-c--------------cchhHHHHHHHHHHHHH------------HHHHHhCCch----h-------HHHHHHHH
Confidence 76531 1 26999988885443222 3344566321 1 35677888
Q ss_pred HHcCCCCcccccCCCCCcHHHHHHhhccCCCCCCC-----CC--------ccCCHHHHHHHHHHH
Q psy2427 605 DQMKIENGLKVLGYTSADIPALVTGTLPQHRITKL-----AP--------REQSEEDLANLFENS 656 (660)
Q Consensus 605 ~~lglp~~L~elGi~~~~i~~ia~~a~~~~~~~~~-----~P--------~~~t~e~i~~il~~a 656 (660)
+.+++|. +.+ -+++++.+....++-.... -| ..++++.+.+.++..
T Consensus 279 ~~~~~~~-~~~-----~~~~~l~~~m~~DKK~~~~~i~~vL~~~iG~~~i~~v~~~~l~~~l~~~ 337 (347)
T d1ujna_ 279 LWLSPPP-LPP-----LAFEDLLPYLLRDKKKVSESLHWVVPLAPGRLVVRPLPEGLLREAFAAW 337 (347)
T ss_dssp HHHCCCC-CCC-----CCHHHHGGGC---------CCCEEEEEETTEEEEECCCHHHHHHHHHHH
T ss_pred HhcCCCC-CCC-----CCHHHHHHHHHhCcCcCCCceEEEEECCCCCeEEecCCHHHHHHHHHHH
Confidence 8888874 333 2445554433222100000 01 357888888887654
|
| >d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) species: Thermotoga maritima [TaxId: 2336]
Probab=96.72 E-value=0.0044 Score=55.26 Aligned_cols=88 Identities=22% Similarity=0.304 Sum_probs=73.0
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
++.||++.... ....++....|+..|+++.++- ...+.+.+.+.+.++.+++.++++||++=||+.- +...+|....
T Consensus 2 kV~Ii~Gs~SD-~~~~~~a~~~L~~~gi~~~~~v-~saHr~p~rl~~~~~~~~~~~~~viIa~AG~aa~-LpgvvA~~t~ 78 (169)
T d1o4va_ 2 RVGIIMGSDSD-LPVMKQAAEILEEFGIDYEITI-VSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAH-LPGMVASITH 78 (169)
T ss_dssp EEEEEESCGGG-HHHHHHHHHHHHHTTCEEEEEE-CCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCC-HHHHHHHHCS
T ss_pred eEEEEECcHhh-HHHHHHHHHHHHHcCCcEEEEE-eeeecCHHHHHHHHHHHHhcCCeEEEEeecCCcC-chHHHHHhcc
Confidence 68888887643 3466899999999999988643 5679999999999999999999999999888766 6788877765
Q ss_pred CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 132 ~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
+|+|.|||..+
T Consensus 79 ------------------------~PVIgvP~~~~ 89 (169)
T d1o4va_ 79 ------------------------LPVIGVPVKTS 89 (169)
T ss_dssp ------------------------SCEEEEEECCT
T ss_pred ------------------------eeEEecccccc
Confidence 89999999643
|
| >d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.0045 Score=54.92 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=72.2
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
|+.||.+.... ....+++.+.|++-||++.++ -...+-+.+.+.+.++.+++.++++||++=|++.- +...++....
T Consensus 3 KV~IImGS~SD-~~~~~~a~~~L~~~gI~~e~~-v~SAHRtp~~l~~~~~~~~~~~~~ViIa~AG~aa~-LpgvvA~~t~ 79 (163)
T d1qcza_ 3 RVAIVMGSKSD-WATMQFAAEIFEILNVPHHVE-VVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAH-LPGMIAAKTL 79 (163)
T ss_dssp CEEEEESSGGG-HHHHHHHHHHHHHHTCCEEEE-ECCTTTCHHHHHHHHHHTTTTTCSEEEEEECSSCC-HHHHHHHSCS
T ss_pred eEEEEECcHhh-HHHHHHHHHHHHHcCCCeEEE-EeccccCHHHHHHHHHHHHHcCCeEEEEeccCCCc-ccchhhHhcc
Confidence 67888876643 346689999999999998854 56789999999999999999999999999998864 5556665543
Q ss_pred CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCc
Q psy2427 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT 167 (660)
Q Consensus 132 ~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gt 167 (660)
+|+|.||+-.+.
T Consensus 80 ------------------------~PVIgVP~~~~~ 91 (163)
T d1qcza_ 80 ------------------------VPVLGVPVQSAA 91 (163)
T ss_dssp ------------------------SCEEEEECCCTT
T ss_pred ------------------------ceeeeccccccc
Confidence 899999998754
|
| >d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) species: Acetobacter aceti [TaxId: 435]
Probab=96.22 E-value=0.0099 Score=52.43 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=72.3
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHh
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYY 130 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~ 130 (660)
.++.||.+.... ....++..+.|++.|+++.++ -...+.+.+.+.+.++.+++.++++||++=|++.- +...++...
T Consensus 3 P~V~IimGS~SD-~~v~~~a~~~L~~~gI~~e~~-v~SAHR~p~~l~~~~~~~e~~~~~viIa~AG~aaa-Lpgvva~~t 79 (159)
T d1u11a_ 3 PVVGIIMGSQSD-WETMRHADALLTELEIPHETL-IVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAH-LPGMCAAWT 79 (159)
T ss_dssp CSEEEEESSGGG-HHHHHHHHHHHHHTTCCEEEE-ECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCC-HHHHHHHHC
T ss_pred CeEEEEeCCHhh-HHHHHHHHHHHHHhCCceEEE-EehHhhChHHHHHHHHHHHhcCCeEEEEEecCCCC-Cccceeeec
Confidence 467888887643 335688899999999998854 46679999999999999999999999999877764 556666555
Q ss_pred cCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCcC
Q psy2427 131 CDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGTG 168 (660)
Q Consensus 131 ~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gtg 168 (660)
. +|+|.||+-.+.+
T Consensus 80 ~------------------------~PVIgvP~~~~~~ 93 (159)
T d1u11a_ 80 R------------------------LPVLGVPVESRAL 93 (159)
T ss_dssp S------------------------SCEEEEEECCTTT
T ss_pred c------------------------eeEEEeccccccc
Confidence 4 8999999987643
|
| >d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) species: Bacillus anthracis [TaxId: 1392]
Probab=95.87 E-value=0.018 Score=50.50 Aligned_cols=89 Identities=21% Similarity=0.204 Sum_probs=70.5
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhc
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYC 131 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~ 131 (660)
.+.||.+... +....++..+.|++-|+++.++ -...+.+.+.+.+.++.+++.+++++|++=|++.- +...++....
T Consensus 3 ~V~IimGS~S-D~~~~~~a~~~L~~~gi~~~~~-v~SAHrtp~rl~~~~~~~~~~~~~viIa~AG~aa~-Lpgvva~~t~ 79 (155)
T d1xmpa_ 3 LVGVIMGSTS-DWETMKYACDILDELNIPYEKK-VVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAH-LPGMVAAKTN 79 (155)
T ss_dssp SEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEE-ECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCC-HHHHHHTTCC
T ss_pred EEEEEECcHh-hHHHHHHHHHHHHHcCCcEEEE-EechhcChHHHHHHHHHHHhhcceEEEeecccCCC-chhHHHHhcc
Confidence 3567777654 3346689999999999998864 46689999999999999999999999998888764 5566665543
Q ss_pred CCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCCc
Q psy2427 132 DPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSGT 167 (660)
Q Consensus 132 ~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~gt 167 (660)
+|+|.||+-.+.
T Consensus 80 ------------------------~PVIgVP~~~~~ 91 (155)
T d1xmpa_ 80 ------------------------LPVIGVPVQSKA 91 (155)
T ss_dssp ------------------------SCEEEEEECCTT
T ss_pred ------------------------ceEEEEEeeccc
Confidence 899999998765
|
| >d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: NAD kinase/diacylglycerol kinase-like superfamily: NAD kinase/diacylglycerol kinase-like family: Diacylglycerol kinase-like domain: Lipid kinase YegS species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.041 Score=53.62 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=52.9
Q ss_pred EEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHHH
Q psy2427 52 RVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAAN 127 (660)
Q Consensus 52 r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~a 127 (660)
|++||..+........+++.+.|++.|+++.++. ........++++.+.+.+.|.||++|| |++..++-.+.
T Consensus 2 ~~l~i~N~~s~~~~~~~~~~~~l~~~g~~~~v~~----T~~~g~a~~~~~~~~~~~~d~Ivv~GGDGTv~ev~~gl~ 74 (295)
T d2bona1 2 ASLLILNGKSTDNLPLREAIMLLREEGMTIHVRV----TWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALI 74 (295)
T ss_dssp CEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEE----CCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCchHHHHHHHHHHHCCCEEEEEE----cCCcchHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHH
Confidence 6777777765444456889999999999987653 122345678888888889999999999 77766666554
|
| >d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: NAD kinase/diacylglycerol kinase-like superfamily: NAD kinase/diacylglycerol kinase-like family: Diacylglycerol kinase-like domain: Diacylglycerol kinase DgkB species: Staphylococcus aureus [TaxId: 1280]
Probab=94.77 E-value=0.034 Score=54.74 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=52.4
Q ss_pred CEEEEEECcccccc---chHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecC-chhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKL---APVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGG-GSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~---~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~~ 126 (660)
||++||..+..-.. ....++.+.|.+.|+++.++. ..+...+.+.++.+...+.|.||++|| |++-.++-.+
T Consensus 3 kr~~vi~NP~SG~~~~~~~~~~~~~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTv~~v~~~l 78 (312)
T d2qv7a1 3 KRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYA----TEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGI 78 (312)
T ss_dssp EEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEE----CCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHH
T ss_pred ceEEEEECcCCCCCcHHHHHHHHHHHHHHCCCeEEEEE----cCCccHHHHHHHHHHHcCCCEEEEEcCCcHHHHHHHHH
Confidence 79999998764321 234678889998998887663 223445677777777778999999998 8877776654
|
| >d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: NAD kinase/diacylglycerol kinase-like superfamily: NAD kinase/diacylglycerol kinase-like family: NAD kinase-like domain: Inorganic polyphosphate/ATP-NAD kinase PpnK species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.34 E-value=0.37 Score=46.85 Aligned_cols=77 Identities=12% Similarity=0.249 Sum_probs=43.6
Q ss_pred CEEEEEECccccc-cchHHHHHHHHHhCCCeEEEEeCcccCCC-----HHHHHHH--------HHHhHhcCCCEEEEecC
Q psy2427 51 QRVCVMTDPHLSK-LAPVKATLDSLTRHGVKFELFDKVRVEPT-----GDSFLEA--------TKFVRSVQCDAFIAVGG 116 (660)
Q Consensus 51 ~r~liVtd~~~~~-~~~~~~i~~~L~~~gi~~~~~~~~~~~p~-----~~~v~~~--------~~~~~~~~~D~IIavGG 116 (660)
||++||+.+.-.+ ....+++.+.|++.|+++.+......... .+..... ...-...++|+||.+||
T Consensus 1 r~v~lv~~~~k~~a~~~a~~i~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGG 80 (302)
T d1u0ta_ 1 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGG 80 (302)
T ss_dssp CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEEC
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEEecchhcccccccCchhhhhcCcccccccccccccccccEEEEEcC
Confidence 6899998765332 23568999999999999887543221110 0000000 01112346899999999
Q ss_pred -chhhhHHHHHH
Q psy2427 117 -GSVIDTCKAAN 127 (660)
Q Consensus 117 -GsviD~AK~~a 127 (660)
|+.+-+++..+
T Consensus 81 DGT~L~a~~~~~ 92 (302)
T d1u0ta_ 81 DGTFLRAAELAR 92 (302)
T ss_dssp HHHHHHHHHHHH
T ss_pred ChHHHHHHHHhh
Confidence 77788887664
|
| >d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: PrpR receptor domain-like family: PrpR receptor domain-like domain: Propionate catabolism operon regulatory protein PrpR species: Escherichia coli [TaxId: 562]
Probab=89.82 E-value=0.45 Score=42.73 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=52.0
Q ss_pred HHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCchhhhHHH
Q psy2427 45 MVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCK 124 (660)
Q Consensus 45 l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK 124 (660)
+++++ +|+.||+-++... ..+.+.+.| ++++..+. --+.++++..++.+++.++|+| ||||.+.|.|+
T Consensus 90 a~~~~-~kiavV~~~~~~~--~~~~~~~ll---~~~i~~~~----~~~~~e~~~~v~~l~~~G~~vV--VG~~~~~~~A~ 157 (186)
T d2pjua1 90 AGKLT-SSIGVVTYQETIP--ALVAFQKTF---NLRLDQRS----YITEEDARGQINELKANGTEAV--VGAGLITDLAE 157 (186)
T ss_dssp TTCTT-SCEEEEEESSCCH--HHHHHHHHH---TCCEEEEE----ESSHHHHHHHHHHHHHTTCCEE--EESHHHHHHHH
T ss_pred HHHhC-CCEEEEeCCccch--HHHHHHHHh---CCceEEEE----ecCHHHHHHHHHHHHHCCCCEE--ECChHHHHHHH
Confidence 34455 7888888776532 347788888 55555442 2468899999999999999999 79999999887
Q ss_pred HH
Q psy2427 125 AA 126 (660)
Q Consensus 125 ~~ 126 (660)
=.
T Consensus 158 ~~ 159 (186)
T d2pjua1 158 EA 159 (186)
T ss_dssp HT
T ss_pred Hc
Confidence 43
|
| >d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Amide receptor/negative regulator of the amidase operon (AmiC) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.10 E-value=1.4 Score=43.14 Aligned_cols=87 Identities=11% Similarity=0.114 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCCEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEEecCc
Q psy2427 38 TREVGMDMVNMKAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIAVGGG 117 (660)
Q Consensus 38 ~~~l~~~l~~~g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 117 (660)
...+.+++.+.+.+|+.++.....+.....+.+.+.+++.|+++.--.-+.-.+...+....+..+++.++|.|+.++.|
T Consensus 122 ~~~~~~~l~~~~~~~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~~d~~~~~~~i~~~~pd~v~~~~~~ 201 (373)
T d1qo0a_ 122 SAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVG 201 (373)
T ss_dssp HHHHHHHHHHHSCSEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCS
T ss_pred HHHHHHHHHhccCceeeeccCCccccHHHHhhhhhhhhcccCceeEEEEccCccccchhHHHHHHHHhhCCCceeecccc
Confidence 34467778888889999888766554456688999999999886521122335678889999999999999998777666
Q ss_pred hhhhHHHHH
Q psy2427 118 SVIDTCKAA 126 (660)
Q Consensus 118 sviD~AK~~ 126 (660)
. |.+.++
T Consensus 202 ~--~~~~~~ 208 (373)
T d1qo0a_ 202 T--GTAELY 208 (373)
T ss_dssp T--THHHHH
T ss_pred c--hHHHHH
Confidence 4 344443
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=84.18 E-value=2.9 Score=33.75 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=46.1
Q ss_pred CEEEEEECccccccchHHHHHHHHHhCCCeEEEEeCcccCCCHHHHHHHHHHhHhcCCCEEEE---ecCchhhhHHHHH
Q psy2427 51 QRVCVMTDPHLSKLAPVKATLDSLTRHGVKFELFDKVRVEPTGDSFLEATKFVRSVQCDAFIA---VGGGSVIDTCKAA 126 (660)
Q Consensus 51 ~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa---vGGGsviD~AK~~ 126 (660)
||+|||-|... ..+.+...|++.|+++..... ..++.+.+++..+|+||- ..|.+-+++.+-+
T Consensus 1 KrILiVdDd~~----~~~~l~~~L~~~g~~v~~a~~---------~~eal~~~~~~~~dlillD~~mp~~~G~~~~~~i 66 (117)
T d2a9pa1 1 KKILIVDDEKP----ISDIIKFNMTKEGYEVVTAFN---------GREALEQFEAEQPDIIILDLMLPEIDGLEVAKTI 66 (117)
T ss_dssp CEEEEECSCHH----HHHHHHHHHHHTTCEEEEESS---------HHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHH
T ss_pred CEEEEEECCHH----HHHHHHHHHHHCCCEEEEECC---------HHHHHHHHHhcCCCEEEeccccCCCCccHHHHHH
Confidence 68888877653 235678889889998876543 356677778889999986 6676767776665
|
| >d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphofructokinase superfamily: Phosphofructokinase family: Phosphofructokinase domain: ATP-dependent phosphofructokinase species: Escherichia coli [TaxId: 562]
Probab=82.99 E-value=3.7 Score=39.72 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHhHhcCCCEEEEecCchhhhHHHHHHhHhcCCCcchhhhhcCCCCCCCCCCCCCCcEEEEcCCCC
Q psy2427 92 TGDSFLEATKFVRSVQCDAFIAVGGGSVIDTCKAANLYYCDPEAEFLDYVNAPIGKGKPVTVPLKPLIAIPTTSG 166 (660)
Q Consensus 92 ~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~~a~~~~~~~~~~~d~~~~~~~~~~~~~~~~lP~i~IPTt~g 166 (660)
+.+..+++++.+++.++|.+|.|||--.++.|..++-. + +|+|.||-|.-
T Consensus 79 ~~~~~~~~~~~l~~~~I~~li~iGG~~s~~~a~~l~~~---~----------------------~~vigiPkTID 128 (320)
T d1pfka_ 79 DENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM---G----------------------FPCIGLPGTID 128 (320)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT---T----------------------CCEEEEEBCTT
T ss_pred chhhhhhHHHHHHHcCCCEEEEeCCchHHHHHHHHHhc---c----------------------cceeeeeeeec
Confidence 46788889999999999999999999999888654321 1 89999999973
|
| >d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=80.99 E-value=2.1 Score=37.53 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=29.4
Q ss_pred CCCEEEEEECccccccchHHHHHHHHHhCCCeEEE
Q psy2427 49 KAQRVCVMTDPHLSKLAPVKATLDSLTRHGVKFEL 83 (660)
Q Consensus 49 g~~r~liVtd~~~~~~~~~~~i~~~L~~~gi~~~~ 83 (660)
+.+|++|+.|..+...+..+++.+.+++.|+.+..
T Consensus 21 ~AkrPvIi~G~g~~~~~a~~~l~~lae~~~~Pv~t 55 (175)
T d1zpda1 21 NRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVAT 55 (175)
T ss_dssp TCSCEEEEECTTTTTTTCHHHHHHHHHHHCCCEEE
T ss_pred cCCCEEEEECcCccccchHHHHHHHHHhhceeEEe
Confidence 45899999999988777778899988888988763
|