Psyllid ID: psy2463

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MPTEYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATPGLTSTIPAIVKSKHYLPKLYHDVP
Secondary Structure (PSIPRED)
ccccccccEEEEcccHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHcccccccccccEEEEccccccccHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEccccHHHHHHHHccccccEEEEEcccccccEEEcHHHHHHHccccccccEEccccccHHHcccccEEccccccEEccccHHHHEEEEcccHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccEEEcccccccHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MPTEYLSLENIVGAGTAGCVLANRLSLHHTVLLieagdfpsfwsnipltspilqrsehdwqyetapqanssgglknnvsfwprgkvlggsgqinllnhydgrpedfeawgpwfdygnvSKVLGHIIgydrktnvgnnvedfpvrvslsdtatpgltstipaivkskhylpklyhdvp
Flexible Loop (DISEMBL)
MPTEYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETApqanssgglkNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSlsdtatpgltstipaivkskhylpklyhdvp
Low Complexity Region (SEG)
MPTEYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATPGLTSTIPAIVKSKHYLPKLYHDVP
Disordered region (IsUnstruct)
****YLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQY***********LKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATPGLTSTIPAIVKSKHYLPKLY****
Disordered Region (DISOPRED)
**TEYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATPGLTSTIPAIVKSKHYLPKL*****
Disordered Region (DISEMBL)
MPTEYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYET********GLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATPGLTSTIPAIVKSKHYLPKLYHDVP
Disordered Region (DISPRO)
*PTEYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATPGLTSTIPAIVKSKHYLPKLY****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPTEYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATPGLTSTIPAIVKSKHYLPKLYHDVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q9WWW2	552	Alcohol dehydrogenase [ac	yes	N/A	0.536	0.172	0.456	2e-14
Q00593	558	Alcohol dehydrogenase [ac	N/A	N/A	0.536	0.170	0.456	3e-14
Q6LGH5	568	Choline dehydrogenase OS=	yes	N/A	0.536	0.167	0.427	2e-12
Q9AJD6	507	Pyridoxine 4-oxidase OS=M	N/A	N/A	0.531	0.185	0.436	2e-12
Q8NE62	594	Choline dehydrogenase, mi	yes	N/A	0.757	0.225	0.345	3e-12
Q9VGP2	581	Neither inactivation nor	no	N/A	0.451	0.137	0.437	5e-12
Q8BJ64	596	Choline dehydrogenase, mi	yes	N/A	0.745	0.221	0.341	5e-12
A7N2P9	569	Choline dehydrogenase OS=	yes	N/A	0.531	0.165	0.442	7e-12
Q6UPE0	599	Choline dehydrogenase, mi	yes	N/A	0.768	0.227	0.35	9e-12
Q7MF12	560	Choline dehydrogenase OS=	yes	N/A	0.531	0.167	0.442	1e-11

>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 8/103 (7%)

Query: 11  IVGAGTAGCVLANRLSLH--HTVLLIEAGDFPSF-WSNIPLTSPILQRSEH-DWQYETAP 66
           IVGAG+AGCVLANRLS      V L+EAG   +    ++PL   +L  S+  +W ++TAP
Sbjct: 6   IVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAFQTAP 65

Query: 67  QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
           Q +    L     FWPRGK LGGS  IN + +  G  ED++AW
Sbjct: 66  QQH----LNERSLFWPRGKTLGGSSSINAMVYIRGHEEDYQAW 104

Converts aliphatic medium-chain-length alcohols into aldehydes. May be linked to the electron transfer chain.
Pseudomonas putida (taxid: 303)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: -

>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ PE=1 SV=1

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 8/103 (7%)

Query: 11  IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPSF-WSNIPLTSPILQRSEH-DWQYETAP 66
           IVGAG+AGCVLANRLS      V L+EAG   +    ++PL   +L  S+  +W ++TAP
Sbjct: 6   IVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAFQTAP 65

Query: 67  QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
           Q N +G       FWPRGK LGGS  IN + +  G  +D+ AW
Sbjct: 66  QQNLNG----RSLFWPRGKTLGGSSSINAMVYIRGHEDDYHAW 104

Converts aliphatic medium-chain-length alcohols into aldehydes. May be linked to the electron transfer chain.

Pseudomonas oleovorans (taxid: 301)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 8/103 (7%)

Query: 11  IVGAGTAGCVLANRLSL--HHTVLLIEAG--DFPSFWSNIPLTSPILQRSEHDWQYETAP 66
           IVGAG+AGCVLA+RLS    H +LL+EAG  D   F       S  +   ++ WQ+ET P
Sbjct: 9   IVGAGSAGCVLADRLSASGEHYILLLEAGGSDRSIFIQMPTALSYPMNSEKYAWQFETQP 68

Query: 67  QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
           +A    GL +     PRG+VLGGS  IN + +  G   D++ W
Sbjct: 69  EA----GLDSRSLHCPRGRVLGGSSSINGMVYVRGHACDYDEW 107

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Photobacterium profundum (taxid: 74109)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q9AJD6|PNO_MICLT Pyridoxine 4-oxidase OS=Microbacterium luteolum GN=pno PE=1 SV=3

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 9/103 (8%)

Query: 11  IVGAGTAGCVLANRLSLH--HTVLLIEAGDFPSFWSNI-PLTSPILQRSEHDWQYETAPQ 67
           I+GAG+AG ++A RLS      VLLIEAG  PS    + P   P +Q   +DW Y+T PQ
Sbjct: 8   IIGAGSAGALIAARLSEDPARNVLLIEAGGRPSDPDILKPSMWPAIQHRSYDWDYKTTPQ 67

Query: 68  ANSSGGLKNNVSF-WPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
             ++G      SF W RGK LGGS  ++ + +  G P DF AW
Sbjct: 68  EGAAG-----RSFAWARGKGLGGSSLLHAMGYMRGHPADFAAW 105

Microbacterium luteolum (taxid: 69367)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 2

>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2 SV=2

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 28/162 (17%)

Query: 11  IVGAGTAGCVLANRLSLH--HTVLLIEAGDFPSFWSNIPLTSPI---------LQRSEHD 59
           +VGAG+AGCVLA RL+      VLL+EAG       +  L+  I         L    ++
Sbjct: 45  VVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYN 104

Query: 60  WQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW----GPWFDY 115
           W Y T  Q     GL   V +WPRG+V GGS  +N + +  G  ED+E W       +DY
Sbjct: 105 WCYHTEVQR----GLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDY 160

Query: 116 GNV----SKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATP 153
            +      K  GH +G  R         D P+RVS   T  P
Sbjct: 161 AHCLPYFRKAQGHELGASRYRGA-----DGPLRVSRGKTNHP 197

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q9VGP2|NINAG_DROME Neither inactivation nor afterpotential protein G OS=Drosophila melanogaster GN=ninaG PE=2 SV=2

 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 47/80 (58%)

Query: 30  TVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGG 89
           +VLLIEAG      S IPL +   Q+  +DW + + PQ +SS GL       PRGK LGG
Sbjct: 72  SVLLIEAGGQFGLLSRIPLLTTFQQKGINDWSFLSVPQKHSSRGLIERRQCLPRGKGLGG 131

Query: 90  SGQINLLNHYDGRPEDFEAW 109
           S  +N + H+DG   DF++W
Sbjct: 132 SANLNYMLHFDGHGPDFDSW 151

Oxidoreductase involved in biosynthesis of 3-hydroxyretinal, a chromophore for rhodopsin Rh1. Not responsible for the initial hydroxylation of the retinal ring but rather acts in a subsequent step in chromophore production. May catalyze the conversion of (3R)-3-hydroxyretinol to the 3S enantiomer.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1 SV=1

 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 32/164 (19%)

Query: 11  IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPSFWSNIPLTSPI---------LQRSEHD 59
           +VGAG+AGCVLA+RL+   +H VLL+EAG       +  L   I         L   +++
Sbjct: 47  VVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVSNLCDDKYN 106

Query: 60  WQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW----GPWFDY 115
           W Y T PQ     G+ + V +WPRG+V GGS  +N + +  G  ED+  W       +DY
Sbjct: 107 WYYHTEPQP----GMDSRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHREGAEGWDY 162

Query: 116 GNVSKVLGHIIGYDRKTN---VGNNVE---DFPVRVSLSDTATP 153
                   H + Y RK     +G N+    D P+ VS   T  P
Sbjct: 163 -------AHCLPYFRKAQRHELGANMYRGGDGPLHVSRGKTNHP 199

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=betA PE=3 SV=1

 Score = 70.1 bits (170), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 60/104 (57%), Gaps = 10/104 (9%)

Query: 11  IVGAGTAGCVLANRLSL--HHTVLLIEAG-DFPSFWSNIP--LTSPILQRSEHDWQYETA 65
           IVGAG+AGCVLA+RLS    H VLL+EAG    S +  +P  L+ P +   ++ WQ+ET 
Sbjct: 9   IVGAGSAGCVLADRLSESGQHQVLLLEAGGSDKSIFIQMPTALSYP-MNTEKYAWQFETV 67

Query: 66  PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
            +     GL       PRGKVLGGS  IN + +  G   DF+ W
Sbjct: 68  AEE----GLDGRQLHCPRGKVLGGSSSINGMVYVRGHACDFDEW 107

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh PE=1 SV=1

 Score = 69.7 bits (169), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 75/160 (46%), Gaps = 24/160 (15%)

Query: 11  IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPSFWSNIPLTSPI---------LQRSEHD 59
           +VGAG+AGCVLANRL+   +H VLL+EAG       +  L   I         L   +++
Sbjct: 50  VVGAGSAGCVLANRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVANLCDDKYN 109

Query: 60  WQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVS 119
           W Y T  Q     GL   V +WPRG+V GGS  +N + +  G  ED+     W   G   
Sbjct: 110 WYYHTEAQP----GLDGRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNR---WHRQGAEG 162

Query: 120 KVLGHIIGYDRKTN---VGNNVE---DFPVRVSLSDTATP 153
               H + Y RK     +G N+    D P+ VS   T  P
Sbjct: 163 WDYAHCLPYFRKAQKHELGANMYRGGDGPLHVSRGKTNHP 202

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA PE=3 SV=1

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 10/104 (9%)

Query: 11  IVGAGTAGCVLANRLSL--HHTVLLIEAG-DFPSFWSNIP--LTSPILQRSEHDWQYETA 65
           IVGAG+AGCVLA+RLS    H+VLL+EAG    S +  +P  L+ P +   ++ WQ+ET 
Sbjct: 9   IVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYP-MNSEKYAWQFETD 67

Query: 66  PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
            +A+    L       PRGKVLGGS  IN + +  G   DF+ W
Sbjct: 68  AEAD----LDGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEW 107

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
321460055	611	hypothetical protein DAPPUDRAFT_309217 [	0.774	0.224	0.429	1e-22
383860831	558	PREDICTED: neither inactivation nor afte	0.559	0.177	0.554	2e-22
347966127	687	AGAP001546-PA [Anopheles gambiae str. PE	0.559	0.144	0.584	3e-22
156550013	566	PREDICTED: neither inactivation nor afte	0.881	0.275	0.416	4e-22
170030011	555	alcohol dehydrogenase [Culex quinquefasc	0.559	0.178	0.574	4e-22
350414768	558	PREDICTED: neither inactivation nor afte	0.610	0.193	0.517	4e-22
340715142	558	PREDICTED: neither inactivation nor afte	0.610	0.193	0.517	5e-22
307168653	553	Neither inactivation nor afterpotential	0.559	0.179	0.544	5e-22
328776224	516	PREDICTED: neither inactivation nor afte	0.559	0.191	0.544	5e-22
198423291	588	PREDICTED: similar to CG9514 CG9514-PA [	0.559	0.168	0.514	6e-22

>gi|321460055|gb|EFX71101.1| hypothetical protein DAPPUDRAFT_309217 [Daphnia pulex]

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 91/142 (64%), Gaps = 5/142 (3%)

Query: 11  IVGAGTAGCVLANRLSLHHT-VLLIEAGDFPSFWSNIPLTSPILQRSE-HDWQYETAPQA 68
           +VGAGT+GCVLA +L+  ++ VL+IEAG  P ++S IPL +PILQ S+ HDW++ T PQ 
Sbjct: 66  VVGAGTSGCVLAAKLAGSNSKVLVIEAGGEPPWYSWIPLIAPILQGSQQHDWRFRTVPQK 125

Query: 69  NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG-PWFDYGNVSKVLGHIIG 127
            ++G L  N +FWP+GK++GGSGQ+N L H  G P DF++W  P +D   +   L  +  
Sbjct: 126 FAAGALHGNQAFWPQGKMVGGSGQMNFLIHTTGSPGDFDSWKVPGWDSQTMKNTLEGLTC 185

Query: 128 YDRKTNVGNNVEDFPVRVSLSD 149
           + +   V  N  + P+  +  D
Sbjct: 186 WTKGNRV--NATEKPLLKAFLD 205

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860831|ref|XP_003705892.1| PREDICTED: neither inactivation nor afterpotential protein G-like [Megachile rotundata]

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 75/101 (74%), Gaps = 2/101 (1%)

Query: 11  IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
           IVGAGTAGCV+A+RLS  L+ TVLL+EAG +  + S++P+ +P++Q +E DW Y T PQ 
Sbjct: 40  IVGAGTAGCVVASRLSEALNVTVLLVEAGGYFGWVSSVPILAPMMQGTEVDWSYSTEPQM 99

Query: 69  NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
            SS GL N++   P+GK LGGSGQ+N L H  GR ED++AW
Sbjct: 100 FSSRGLLNHIQKVPKGKGLGGSGQMNYLVHSFGRSEDYKAW 140

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347966127|ref|XP_551275.4| AGAP001546-PA [Anopheles gambiae str. PEST] gi|333470198|gb|EAL38574.4| AGAP001546-PA [Anopheles gambiae str. PEST]

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 69/101 (68%), Gaps = 2/101 (1%)

Query: 11  IVGAGTAGCVLANRLSLH--HTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
           IVGAGTAGCVLANRLS +   TVLL+EAGD     S IPL S  +Q +++DW + T PQ 
Sbjct: 53  IVGAGTAGCVLANRLSENPNVTVLLVEAGDTFGAASIIPLISTAMQGTKYDWAFRTTPQK 112

Query: 69  NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
            SS GL NN    PRGK LGGSGQIN + H+ G  EDF+ W
Sbjct: 113 YSSHGLGNNQQLLPRGKGLGGSGQINYMLHFTGIREDFDRW 153

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550013|ref|XP_001604519.1| PREDICTED: neither inactivation nor afterpotential protein G-like [Nasonia vitripennis]

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 92/161 (57%), Gaps = 5/161 (3%)

Query: 11  IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
           IVGAGTAGCV+A+RLS   + TVLL+EAG + ++ S+IPL +P LQ++  DW Y+T  QA
Sbjct: 40  IVGAGTAGCVMASRLSEDPNVTVLLVEAGGYFNWLSSIPLAAPALQKTHVDWGYKTESQA 99

Query: 69  NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGY 128
            SS GL ++    PRGK LGGSGQ+N L H  GRPED+  W   + Y ++      +   
Sbjct: 100 FSSRGLWDHQQRIPRGKGLGGSGQLNYLVHSFGRPEDYSNWPRGWSYADLQPYFKKVAS- 158

Query: 129 DRKTNVGNNVEDFPVRVSLSDTATPGLTSTIPAIVKSKHYL 169
               +V   V D    V   D A   +  T    +K++  L
Sbjct: 159 --TMHVQQIVSDEQGLVQAMDMARETMNETDTVFIKAQSTL 197

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170030011|ref|XP_001842884.1| alcohol dehydrogenase [Culex quinquefasciatus] gi|167865344|gb|EDS28727.1| alcohol dehydrogenase [Culex quinquefasciatus]

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 68/101 (67%), Gaps = 2/101 (1%)

Query: 11  IVGAGTAGCVLANRLSLHH--TVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
           IVGAGTAG VLANRLS +   +VLLIEAGD     S +PL +  LQ++  DW + T PQ 
Sbjct: 53  IVGAGTAGSVLANRLSANANVSVLLIEAGDVFGAASVVPLLATTLQQTSSDWAFRTTPQK 112

Query: 69  NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
            SS GL NN  F PRG+ LGGSGQIN + H+ G  EDFE W
Sbjct: 113 YSSRGLINNQQFLPRGRSLGGSGQINYMLHFTGTGEDFERW 153

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414768|ref|XP_003490412.1| PREDICTED: neither inactivation nor afterpotential protein G-like [Bombus impatiens]

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 79/116 (68%), Gaps = 8/116 (6%)

Query: 2   PTEYLSLEN------IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWSNIPLTSPIL 53
           PT  + L N      IVGAGTAGCVLA+RLS   + +VLL+EAG    + S++P+ +PI+
Sbjct: 25  PTSIIELPNTHYDYIIVGAGTAGCVLASRLSEISNVSVLLVEAGGHFGWISSVPILAPIM 84

Query: 54  QRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
           Q+++ DW Y T PQ  SS G  N++   PRGK LGGSGQIN L H  G+PED++AW
Sbjct: 85  QKTDVDWSYSTEPQRFSSKGFWNHIQKIPRGKGLGGSGQINHLVHSFGKPEDYKAW 140

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715142|ref|XP_003396078.1| PREDICTED: neither inactivation nor afterpotential protein G-like [Bombus terrestris]

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 79/116 (68%), Gaps = 8/116 (6%)

Query: 2   PTEYLSLEN------IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWSNIPLTSPIL 53
           PT  + L N      IVGAGTAGCVLA+RLS   + +VLL+EAG    + S++P+ +PI+
Sbjct: 25  PTSIIELPNTHYDYIIVGAGTAGCVLASRLSEISNVSVLLVEAGGHFGWISSVPILAPIM 84

Query: 54  QRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
           Q+++ DW Y T PQ  SS G  N++   PRGK LGGSGQIN L H  G+PED++AW
Sbjct: 85  QKTDVDWSYSTEPQRFSSKGFWNHIQKIPRGKGLGGSGQINHLVHSFGKPEDYKAW 140

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168653|gb|EFN61689.1| Neither inactivation nor afterpotential protein G [Camponotus floridanus]

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 70/101 (69%), Gaps = 2/101 (1%)

Query: 11  IVGAGTAGCVLANRLSLHH--TVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
           +VGAGT+GCV+A+RLS     TVLL+EAG +  + S IPL +P++Q +E DW Y+T PQ 
Sbjct: 40  VVGAGTSGCVIASRLSEMSNVTVLLVEAGGYFGWTSAIPLLAPMMQDTEVDWAYKTEPQV 99

Query: 69  NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
            SS G       WPRGK LGGSGQ+N L H  GRPED++ W
Sbjct: 100 FSSRGFNGYRQNWPRGKGLGGSGQLNYLVHSFGRPEDYKKW 140

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776224|ref|XP_001121992.2| PREDICTED: neither inactivation nor afterpotential protein G-like [Apis mellifera]

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 74/101 (73%), Gaps = 2/101 (1%)

Query: 11  IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
           IVGAGTAGCV+A+RLS   + T+LL+EAG    + S+IP+ +P+LQ+++ DW Y T PQ 
Sbjct: 40  IVGAGTAGCVIASRLSEISNLTILLVEAGGHFGWVSSIPILTPVLQKTDVDWSYSTEPQI 99

Query: 69  NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
            SS G  N++   PRGK LGG+GQIN L H  G+PED++AW
Sbjct: 100 YSSKGFWNHIQKVPRGKGLGGTGQINYLVHSFGKPEDYKAW 140

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198423291|ref|XP_002119754.1| PREDICTED: similar to CG9514 CG9514-PA [Ciona intestinalis]

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 73/103 (70%), Gaps = 4/103 (3%)

Query: 11  IVGAGTAGCVLANRLSLHHT--VLLIEAGD--FPSFWSNIPLTSPILQRSEHDWQYETAP 66
           IVGAGTAG V+ANRL+  H   VL++EAGD   P+ + ++PL +P +QRS+ DWQY T P
Sbjct: 38  IVGAGTAGNVIANRLTESHKTKVLVLEAGDNDAPNLFISVPLFAPFMQRSKQDWQYRTEP 97

Query: 67  QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
           Q +  G LK+NVS WP+GKV+GGS  +N   +  G  +DF++W
Sbjct: 98  QKHGCGLLKDNVSLWPQGKVVGGSSCLNYFLYTRGAKDDFDSW 140

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
FB|FBgn0030589	622	CG9519 [Drosophila melanogaste	0.785	0.223	0.381	1.4e-18
FB|FBgn0030592	726	CG9514 [Drosophila melanogaste	0.700	0.170	0.403	2.4e-18
FB|FBgn0039415	616	CG6142 [Drosophila melanogaste	0.559	0.160	0.435	2.9e-18
FB|FBgn0030590	703	CG9518 [Drosophila melanogaste	0.610	0.153	0.429	2.1e-17
TIGR_CMR|SPO_A0283	534	SPO_A0283 "oxidoreductase, GMC	0.536	0.177	0.485	5.3e-17
TIGR_CMR|SPO_A0386	541	SPO_A0386 "oxidoreductase, GMC	0.536	0.175	0.466	1.5e-16
FB|FBgn0030588	621	CG9521 [Drosophila melanogaste	0.762	0.217	0.368	2e-16
FB|FBgn0030591	865	CG9517 [Drosophila melanogaste	0.621	0.127	0.398	2.1e-16
FB|FBgn0030596	633	CG12398 [Drosophila melanogast	0.610	0.170	0.385	5.5e-16
FB|FBgn0030598	626	CG9503 [Drosophila melanogaste	0.700	0.198	0.372	8.9e-16

FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)]

 Score = 233 (87.1 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 58/152 (38%), Positives = 84/152 (55%)

Query:    11 IVGAGTAGCVLANRLSLHHT--VLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
             +VGAGTAGC LA RLS +    VLL+EAG   ++  +IP+ + +LQ  E +W+Y+T P  
Sbjct:    66 VVGAGTAGCALAARLSENPRWRVLLLEAGGPENYAMDIPIVAHLLQLGEINWKYKTEPSN 125

Query:    69 NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG----PWFDYGNV----SK 120
             +    + NN   WPRGKV+GGS  +N + +  G   D++ W     P + Y  V     K
Sbjct:   126 SYCLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWARLGNPGWSYEEVLPYFKK 185

Query:   121 VLGHIIGYDRKTNVGNNVEDFPVRVSLSDTAT 152
               G ++    +  VG N    PV+VS S+T T
Sbjct:   186 YEGSVVPDADENLVGRNG---PVKVSYSETRT 214

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)]

 Score = 232 (86.7 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 52/129 (40%), Positives = 73/129 (56%)

Query:    11 IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
             I+G G+AG VLA+RLS   H  +LL+EAG   +  S++PL S  L +S+ DW+Y T PQ 
Sbjct:    99 IIGGGSAGTVLASRLSEIPHWKILLLEAGGHETEISDVPLLSLYLHKSKMDWKYRTQPQP 158

Query:    69 NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGY 128
              +   +K+    W RGKVLGGS  +N + +  G   DF+ W    D+GN       I+ Y
Sbjct:   159 TACQAMKDKRCCWTRGKVLGGSSVLNTMLYIRGNKRDFDQWA---DFGNPGWSYEDILPY 215

Query:   129 DRKTNVGNN 137
              RK+    N
Sbjct:   216 FRKSEDQRN 224

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 2.9e-18, P = 2.9e-18
 Identities = 44/101 (43%), Positives = 67/101 (66%)

Query:    11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
             IVGAG+AGCV+ANRLS     +VLL+EAGD  +F S++PLT+ + Q + ++W Y+  P  
Sbjct:    52 IVGAGSAGCVMANRLSEISSASVLLLEAGDQETFISDVPLTAALTQMTRYNWGYKAEPTE 111

Query:    69 NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
             ++  GLK  V  WP+G+ +GG+  IN + +  G   D++ W
Sbjct:   112 HACQGLKGGVCNWPKGRGVGGTSLINFMLYTRGHRRDYDEW 152

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)]

 Score = 223 (83.6 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 49/114 (42%), Positives = 69/114 (60%)

Query:    11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
             +VG+G+AG V+ANRLS      VLLIEAG   +  S++P  +  LQ S+ DW Y+T P  
Sbjct:    61 VVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDWAYKTEPST 120

Query:    69 NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG----PWFDYGNV 118
              +  G++NN   WPRG+VLGGS  +N + +  G   D++ W     P +DY NV
Sbjct:   121 KACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWASLGNPGWDYDNV 174

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

TIGR_CMR|SPO_A0283 SPO_A0283 "oxidoreductase, GMC family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 217 (81.4 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 50/103 (48%), Positives = 58/103 (56%)

Query:    11 IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPS-FWSNIPLT-SPILQRSEHDWQYETAP 66
             IVGAG+AGCVLA RLS    HTVLLIEAG     FW  +PL           +W Y    
Sbjct:     8 IVGAGSAGCVLAERLSASGRHTVLLIEAGGSDRRFWVKVPLGYGKTYDDPSVNWCYT--- 64

Query:    67 QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
              A S  GL    +FWPRG+VLGGS  IN + +  G P DF+ W
Sbjct:    65 -AQSDPGLAGRAAFWPRGRVLGGSSSINAMAYVQGLPHDFDDW 106

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_A0386 SPO_A0386 "oxidoreductase, GMC family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 213 (80.0 bits), Expect = 1.5e-16, P = 1.5e-16
 Identities = 48/103 (46%), Positives = 61/103 (59%)

Query:    11 IVGAGTAGCVLANRLSL--HHTVLLIEAGDFP-SFWSNIPLT-SPILQRSEHDWQYETAP 66
             IVGAG+AGCVLANRLS     TVLL+EAG    +FW  +P+       +   +W Y T P
Sbjct:     8 IVGAGSAGCVLANRLSESGRFTVLLLEAGGSDLNFWIWMPIGYGKTFYKPSVNWMYHTEP 67

Query:    67 QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
                    L   VS+WPRGKVLGGS  IN + +  G+ +DF+ W
Sbjct:    68 DP----ALNGRVSYWPRGKVLGGSSSINAMVYIRGQAQDFDEW 106

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)]

 Score = 213 (80.0 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 53/144 (36%), Positives = 80/144 (55%)

Query:    11 IVGAGTAGCVLANRLSLHHT--VLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
             +VGAGTAGC LA RLS +    VLL+EAG       ++P+ +  LQ  E +W+Y T P  
Sbjct:    64 VVGAGTAGCALAARLSENPQWRVLLLEAGGPERLVMDVPIVAHFLQLGEMNWKYRTQPSD 123

Query:    69 NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYG-NVSKVLGHIIG 127
             ++   + NN   WPRGKV+GGS  +N + +  G   D++ W    + G +   VL +   
Sbjct:   124 HACLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWEALGNPGWSFKDVLPYFKK 183

Query:   128 YDRKTNVGNNVEDF-----PVRVS 146
             Y+  ++V +  ED+     PV+VS
Sbjct:   184 YEG-SSVPDAEEDYVGRNGPVKVS 206

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)]

 Score = 215 (80.7 bits), Expect = 2.1e-16, P = 2.1e-16
 Identities = 47/118 (39%), Positives = 70/118 (59%)

Query:    11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
             ++G G+AG V+ANRLS   + TVLL+EAG   +  S++P  +  LQ +E DW+Y+T P +
Sbjct:   300 VIGGGSAGAVVANRLSEVRNWTVLLLEAGGDETEISDVPALAGYLQLTELDWKYQTTPSS 359

Query:    69 NSS--GGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG----PWFDYGNVSK 120
                    +K +  FWPRGKVLGGS  +N + +  G   D+  W     P +DY ++ K
Sbjct:   360 TRQYCQAMKGDRCFWPRGKVLGGSSVLNAMVYVRGSKNDYNHWASLGNPGWDYDSMLK 417

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030596 CG12398 [Drosophila melanogaster (taxid:7227)]

 Score = 209 (78.6 bits), Expect = 5.5e-16, P = 5.5e-16
 Identities = 44/114 (38%), Positives = 64/114 (56%)

Query:    11 IVGAGTAGCVLANRLSLHH--TVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
             ++G G+AGCVLA RLS +   +VLL+EAG       ++P   P+ QRS  DW+Y T P  
Sbjct:    61 VIGGGSAGCVLAARLSENPEWSVLLLEAGGDEPLLIDLPQLYPVFQRSPWDWKYLTEPSD 120

Query:    69 NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG----PWFDYGNV 118
                  +++   FWPR KVLGG   IN + +  G   D++ W     P ++Y N+
Sbjct:   121 RYCLAMEDQRCFWPRAKVLGGCSSINAMMYIRGNRRDYDQWAALGNPGWNYDNI 174

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0042600 "chorion" evidence=IDA

FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)]

 Score = 207 (77.9 bits), Expect = 8.9e-16, P = 8.9e-16
 Identities = 48/129 (37%), Positives = 72/129 (55%)

Query:    11 IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA 68
             ++GAG+AG V+ANRL+   +  VLL+EAG   +  +++PL +  LQ S+ DWQY+T P  
Sbjct:    64 VIGAGSAGAVVANRLTEVENWNVLLLEAGGDETELTDVPLMAGYLQLSKIDWQYKTEPSG 123

Query:    69 NSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGY 128
              S   ++     WPRGKVLGGS  +N + +  G   D++ W      GN S      + Y
Sbjct:   124 TSCLAMQGGRCNWPRGKVLGGSSVLNYMLYLRGSKHDYDNWEAM---GNPSWSYRDALYY 180

Query:   129 DRKTNVGNN 137
              +K+    N
Sbjct:   181 FKKSEDNTN 189

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	177
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	1e-22
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	3e-21
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	4e-14
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	2e-12
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	3e-07
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	0.001

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 93.4 bits (233), Expect = 1e-22
 Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 12/107 (11%)

Query: 11  IVGAGTAGCVLANRLS--LHHTVLLIEAG--DFP-SFWSNIP--LTSPILQRSEHDWQYE 63
           I+GAG+AGCVLANRLS     +VLL+EAG  D+   F+  +P  L  P+ Q   ++W YE
Sbjct: 10  IIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPL-QGKRYNWAYE 68

Query: 64  TAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
           T P+ +    + N     PRGKVLGGS  IN + +  G   D++ W 
Sbjct: 69  TEPEPH----MNNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWA 111

Length = 560

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 89.1 bits (221), Expect = 3e-21
 Identities = 43/104 (41%), Positives = 56/104 (53%), Gaps = 7/104 (6%)

Query: 11  IVGAGTAGCVLANRLS-LHHTVLLIEAG-DFPSFWSNIPLTSPILQRSE-HDWQYETAPQ 67
           IVG+G+AG VLA RLS    +VL++EAG         +P     L     +DW + T P+
Sbjct: 12  IVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPE 71

Query: 68  ANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGP 111
                 L+     WPRGKVLGGS  IN + +  G PEDF+AW  
Sbjct: 72  P----HLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQ 111

Length = 542

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score = 68.8 bits (168), Expect = 4e-14
 Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 12/106 (11%)

Query: 11  IVGAGTAGCVLANRLS--LHHTVLLIEAG--DFP-SFWSNIP--LTSPILQRSEHDWQYE 63
           I+G G+AG VLA RLS  + ++VL++EAG  D+P      +P  L  P      ++W YE
Sbjct: 4   IIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYP-AGNKRYNWIYE 62

Query: 64  TAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
           T P+ +    + N      RGKVLGGS  IN + +  G P D+E W
Sbjct: 63  TEPEPH----MNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKW 104

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 42/121 (34%), Positives = 57/121 (47%), Gaps = 22/121 (18%)

Query: 11  IVGAGTAGCVLANRLSLH--HTVLLIEAGDFPSFWSNIP------LTSPILQRSEHDWQY 62
           +VG G+AGCV+A RLS     TV ++EAG      S +P      L  PI   S   W+Y
Sbjct: 5   VVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVVWRY 64

Query: 63  ETA----PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG-PWFDYGN 117
                  P+  S+           RG+VLGGSG +N        P DF+AW  P + + +
Sbjct: 65  GVELTDGPRRASA---------IVRGRVLGGSGAVNGGYFCRALPADFDAWPIPGWSWDD 115

Query: 118 V 118
           V
Sbjct: 116 V 116

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 11  IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANS 70
           +VG GTAGC LA  LS + +VLL+E G  P   +N+         + H    +T+P + S
Sbjct: 60  VVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFL-----ENFHIGLADTSPTSAS 114

Query: 71  SGGLKNNVSFWPRGKVLGGSGQIN 94
              +  +     R +VLGG   IN
Sbjct: 115 QAFISTDGVINARARVLGGGTCIN 138

Length = 587

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 35.5 bits (83), Expect = 0.001
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
          IVGAG +G V A  L+     VL++E  D  
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRI 31

Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
KOG1238|consensus	623		100.0
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	100.0
PRK02106	560	choline dehydrogenase; Validated	100.0
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	100.0
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	100.0
PLN02785	587	Protein HOTHEAD	99.95
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	99.61
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.66
PRK10015	429	oxidoreductase; Provisional	98.57
PRK10157	428	putative oxidoreductase FixC; Provisional	98.55
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.45
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.43
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.43
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.4
PRK14694	468	putative mercuric reductase; Provisional	98.4
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.4
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.4
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.37
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.37
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.36
PRK08274	466	tricarballylate dehydrogenase; Validated	98.34
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.34
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.34
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.33
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.3
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.3
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.29
PRK06185	407	hypothetical protein; Provisional	98.29
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.28
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.27
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.26
PRK06116	450	glutathione reductase; Validated	98.26
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.25
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.24
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.24
PRK09126	392	hypothetical protein; Provisional	98.23
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.23
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.22
PRK07121	492	hypothetical protein; Validated	98.21
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.21
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.21
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.2
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.19
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.19
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.19
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.19
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.19
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.19
PLN02463	447	lycopene beta cyclase	98.19
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.19
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.18
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.18
PTZ00058	561	glutathione reductase; Provisional	98.18
COG2081	408	Predicted flavoproteins [General function predicti	98.18
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.17
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.17
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.17
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.17
PRK06370	463	mercuric reductase; Validated	98.16
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.16
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.15
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.15
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.15
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.14
PRK07045	388	putative monooxygenase; Reviewed	98.14
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.14
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.14
PRK08013	400	oxidoreductase; Provisional	98.13
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.12
PLN02985	514	squalene monooxygenase	98.12
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.12
KOG1298|consensus	509		98.11
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.11
PLN02697	529	lycopene epsilon cyclase	98.11
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.11
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.1
PLN02507	499	glutathione reductase	98.1
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.09
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.09
TIGR02053	463	MerA mercuric reductase. This model represents the	98.09
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.08
COG3573	552	Predicted oxidoreductase [General function predict	98.08
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.08
KOG0029|consensus	501		98.07
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.07
PTZ00367	567	squalene epoxidase; Provisional	98.07
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.07
PRK13748	561	putative mercuric reductase; Provisional	98.07
PRK08244	493	hypothetical protein; Provisional	98.06
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.05
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.05
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.04
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.04
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.03
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.03
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.03
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.03
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.03
PRK07190	487	hypothetical protein; Provisional	98.02
PTZ00052	499	thioredoxin reductase; Provisional	98.02
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.01
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.01
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.01
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.01
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.01
PRK06847	375	hypothetical protein; Provisional	98.0
PRK07804	541	L-aspartate oxidase; Provisional	98.0
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.0
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.99
PRK08275	554	putative oxidoreductase; Provisional	97.98
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.98
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.98
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.97
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.97
PRK06184	502	hypothetical protein; Provisional	97.97
PRK07588	391	hypothetical protein; Provisional	97.97
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.97
PRK06834	488	hypothetical protein; Provisional	97.97
PLN02661	357	Putative thiazole synthesis	97.96
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.96
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.96
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.96
PLN02576	496	protoporphyrinogen oxidase	97.96
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.95
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.95
PRK06126	545	hypothetical protein; Provisional	97.95
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.95
PLN02546	558	glutathione reductase	97.95
PLN02268	435	probable polyamine oxidase	97.94
PRK06175	433	L-aspartate oxidase; Provisional	97.94
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.94
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.94
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.93
PRK10262	321	thioredoxin reductase; Provisional	97.93
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.93
PRK08401	466	L-aspartate oxidase; Provisional	97.92
PRK07236	386	hypothetical protein; Provisional	97.92
PRK06753	373	hypothetical protein; Provisional	97.92
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.92
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.92
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.91
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.9
PRK07208	479	hypothetical protein; Provisional	97.9
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.9
PRK08163	396	salicylate hydroxylase; Provisional	97.9
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.9
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.9
PRK14727	479	putative mercuric reductase; Provisional	97.88
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.87
PRK07233	434	hypothetical protein; Provisional	97.87
PLN02676	487	polyamine oxidase	97.87
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.87
PLN02815	594	L-aspartate oxidase	97.87
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.87
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.86
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.86
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.86
PRK05257	494	malate:quinone oxidoreductase; Validated	97.86
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.85
PRK12839	572	hypothetical protein; Provisional	97.85
PRK08294	634	phenol 2-monooxygenase; Provisional	97.85
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.84
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.83
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.83
PRK11445	351	putative oxidoreductase; Provisional	97.82
PRK06996	398	hypothetical protein; Provisional	97.81
PRK07395	553	L-aspartate oxidase; Provisional	97.81
PRK07538	413	hypothetical protein; Provisional	97.8
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.8
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.8
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.78
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.77
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.77
PRK08071	510	L-aspartate oxidase; Provisional	97.77
PRK09077	536	L-aspartate oxidase; Provisional	97.75
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.74
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.74
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.72
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.72
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.72
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.71
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.7
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.69
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.68
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.67
PRK05868	372	hypothetical protein; Validated	97.67
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.66
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.65
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.65
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.64
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.63
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.61
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.61
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.57
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.56
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.55
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.55
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.55
PRK06475	400	salicylate hydroxylase; Provisional	97.54
PRK07846	451	mycothione reductase; Reviewed	97.52
PRK07512	513	L-aspartate oxidase; Provisional	97.52
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.49
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.48
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.47
KOG2415|consensus	621		97.47
PLN02568	539	polyamine oxidase	97.47
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.46
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.46
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.45
KOG0685|consensus	498		97.45
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.44
COG0579	429	Predicted dehydrogenase [General function predicti	97.44
KOG2820|consensus	399		97.43
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.42
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.4
PLN02529	738	lysine-specific histone demethylase 1	97.38
PRK12831	464	putative oxidoreductase; Provisional	97.36
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.35
COG3349	485	Uncharacterized conserved protein [Function unknow	97.34
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.32
KOG3855|consensus	481		97.32
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.28
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.28
PLN02612	567	phytoene desaturase	97.27
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.26
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.26
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.24
KOG0405|consensus	478		97.24
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.23
KOG4716|consensus	503		97.22
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.22
KOG2614|consensus	420		97.17
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.16
KOG1399|consensus	448		97.16
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.12
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.1
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.1
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.08
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.04
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.02
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.02
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.0
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.98
PLN03000	881	amine oxidase	96.96
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	96.95
PLN02487	569	zeta-carotene desaturase	96.93
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.89
PLN02976	1713	amine oxidase	96.87
KOG2665|consensus	453		96.82
PRK13977	576	myosin-cross-reactive antigen; Provisional	96.81
PLN02852	491	ferredoxin-NADP+ reductase	96.8
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	96.77
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.75
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.7
KOG4254|consensus	561		96.69
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.69
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.64
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.55
KOG1335|consensus	506		96.55
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.54
PRK13984	604	putative oxidoreductase; Provisional	96.43
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.38
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.38
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.34
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.33
KOG2960|consensus	328		96.24
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.24
KOG2311|consensus	679		96.23
PRK09897	534	hypothetical protein; Provisional	96.21
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.2
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.09
PTZ00188	506	adrenodoxin reductase; Provisional	96.03
KOG0042|consensus	680		96.01
KOG3851|consensus	446		95.88
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.85
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	95.71
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.61
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.54
KOG2404|consensus	477		95.41
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.41
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	95.4
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	95.39
KOG2844|consensus	856		95.28
KOG1276|consensus	491		95.26
KOG4405|consensus	547		95.24
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	94.87
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	94.73
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.72
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	94.68
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	94.66
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.59
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.54
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	94.5
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	94.41
KOG2853|consensus	509		94.32
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	94.27
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	94.21
COG2907	447	Predicted NAD/FAD-binding protein [General functio	94.16
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	94.09
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.99
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	93.99
KOG2755|consensus	334		93.94
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	93.8
TIGR02053	463	MerA mercuric reductase. This model represents the	93.73
PRK07846	451	mycothione reductase; Reviewed	93.71
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.66
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	93.65
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.61
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.58
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	93.42
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	93.36
KOG1439|consensus	440		93.29
PRK06370	463	mercuric reductase; Validated	93.28
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	93.27
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	93.27
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	93.22
PRK13512	438	coenzyme A disulfide reductase; Provisional	93.18
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	93.17
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	93.08
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	92.92
PRK14989	847	nitrite reductase subunit NirD; Provisional	92.9
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	92.77
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	92.77
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	92.69
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	92.57
PRK09564	444	coenzyme A disulfide reductase; Reviewed	92.54
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	92.51
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.49
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	92.4
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	92.34
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	92.28
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	92.28
PRK06116	450	glutathione reductase; Validated	92.23
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	92.15
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	92.15
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.09
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.07
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	92.05
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	91.98
PRK07845	466	flavoprotein disulfide reductase; Reviewed	91.96
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	91.89
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	91.87
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	91.87
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	91.73
PRK06719	157	precorrin-2 dehydrogenase; Validated	91.7
PRK10262	321	thioredoxin reductase; Provisional	91.7
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	91.69
PTZ00153	659	lipoamide dehydrogenase; Provisional	91.68
PLN02507	499	glutathione reductase	91.61
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	91.59
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	91.57
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	91.49
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	91.44
PRK13748	561	putative mercuric reductase; Provisional	91.4
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.17
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.17
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	91.17
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.14
PRK14694	468	putative mercuric reductase; Provisional	91.09
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	91.08
KOG1800|consensus	468		91.06
PLN02546	558	glutathione reductase	91.04
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.97
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.97
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	90.95
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.94
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.94
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	90.93
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.8
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	90.78
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	90.67
PRK14727	479	putative mercuric reductase; Provisional	90.62
PTZ00058	561	glutathione reductase; Provisional	90.61
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	90.51
PRK14989	847	nitrite reductase subunit NirD; Provisional	90.41
PRK04148	134	hypothetical protein; Provisional	90.34
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.32
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	90.22
KOG0404|consensus	322		90.21
PRK12770	352	putative glutamate synthase subunit beta; Provisio	90.15
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.14
PRK08328	231	hypothetical protein; Provisional	90.08
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	89.99
KOG0399|consensus	2142		89.81
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	89.79
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	89.76
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	89.72
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	89.63
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	89.52
PTZ00052	499	thioredoxin reductase; Provisional	89.47
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	89.27
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	89.25
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	89.18
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	89.18
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	88.99
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	88.88
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	88.87
PRK10669	558	putative cation:proton antiport protein; Provision	88.85
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	88.77
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.75
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	88.66
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	88.6
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	88.6
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	88.54
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	88.41
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	88.14
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	88.0
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.76
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.64
PRK09496	453	trkA potassium transporter peripheral membrane com	87.56
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	87.45
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	87.42
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	87.35
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	87.27
PRK09496	453	trkA potassium transporter peripheral membrane com	87.09
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	86.94
PRK08223	287	hypothetical protein; Validated	86.93
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	86.8
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	86.74
PTZ00082	321	L-lactate dehydrogenase; Provisional	86.66
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	86.5
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	86.43
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	86.42
KOG2495|consensus	491		86.39
KOG2018|consensus	430		86.34
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	86.32
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	86.3
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	86.3
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	86.17
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	86.13
PRK12831	464	putative oxidoreductase; Provisional	86.1
PRK11730	715	fadB multifunctional fatty acid oxidation complex	86.04
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	85.94
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	85.88
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	85.72
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	85.67
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	85.67
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	85.59
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	85.24
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	85.23
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	84.9
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	84.89
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.84
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	84.75
PRK12548	289	shikimate 5-dehydrogenase; Provisional	84.55
PLN02353	473	probable UDP-glucose 6-dehydrogenase	84.36
PRK07417	279	arogenate dehydrogenase; Reviewed	84.23
PRK07411	390	hypothetical protein; Validated	84.14
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	83.79
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	83.6
PRK08017	256	oxidoreductase; Provisional	83.55
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	83.53
PRK06223	307	malate dehydrogenase; Reviewed	83.45
KOG2403|consensus	642		83.37
PRK07454	241	short chain dehydrogenase; Provisional	83.33
PRK03562	621	glutathione-regulated potassium-efflux system prot	83.25
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	83.15
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	83.13
PRK07326	237	short chain dehydrogenase; Provisional	82.77
PRK07060	245	short chain dehydrogenase; Provisional	82.74
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	82.65
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	82.32
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	82.28
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	82.27
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	82.2
COG0281	432	SfcA Malic enzyme [Energy production and conversio	82.18
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	81.65
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	81.64
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	81.52
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	81.49
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	81.45
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	81.43
PRK06153	393	hypothetical protein; Provisional	81.41
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	81.27
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	81.27
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	81.15
KOG2852|consensus	380		81.07
PLN02602	350	lactate dehydrogenase	80.81
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	80.77
PRK05562	223	precorrin-2 dehydrogenase; Provisional	80.71
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	80.71
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	80.56
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	80.47
PRK08177	225	short chain dehydrogenase; Provisional	80.3
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	80.15
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	80.06

>KOG1238|consensus

Probab=100.00  E-value=3.8e-40  Score=292.79  Aligned_cols=165  Identities=31%  Similarity=0.449  Sum_probs=150.3

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCCCCCCCCCCCcccccCCCCCCccccCCCCCcCCCCCCCeeec
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFW   81 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~   81 (177)
                      ...|||||||||+|||++|+||||++  +|||||||+..+...++|.....+..+.++|.|.+.|+..+|..+.++.+.|
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c~w  134 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRCYW  134 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCceec
Confidence            45799999999999999999999998  9999999999876667775555666789999999999999999999999999


Q ss_pred             ccceeecCCcccccccccCCChhHHhhhC----CCCCCchHHHHHHHHhcCCCC--CCCCCCccccceeecCCCCCCchh
Q psy2463          82 PRGKVLGGSGQINLLNHYDGRPEDFEAWG----PWFDYGNVSKVLGHIIGYDRK--TNVGNNVEDFPVRVSLSDTATPGL  155 (177)
Q Consensus        82 ~~g~~lGGsS~in~~~~~R~~~~dfd~w~----~~W~~~~l~pyf~~~E~~~~~--~~~~~~g~~Gpv~v~~~~~~~p~~  155 (177)
                      +|||+|||||++|+|+|.|+++.|||+|+    +||+|++++|||+|+|...-+  ....+|+..||+.+....+.+++.
T Consensus       135 pRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~~~  214 (623)
T KOG1238|consen  135 PRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNNLF  214 (623)
T ss_pred             CccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccccCchh
Confidence            99999999999999999999999999998    789999999999999987443  334589999999999999999999


Q ss_pred             HHHHHHHHHcCCc
Q psy2463         156 TSTIPAIVKSKHY  168 (177)
Q Consensus       156 ~~~~~a~~~~G~~  168 (177)
                      ..|.++-+|+|..
T Consensus       215 ~~~~~ag~e~G~~  227 (623)
T KOG1238|consen  215 TAFHRAGTEIGGS  227 (623)
T ss_pred             hHhHHhHHhcCCC
Confidence            9999999999943

>TIGR01810 betA choline dehydrogenase

Probab=100.00  E-value=1.3e-35  Score=264.74  Aligned_cols=163  Identities=29%  Similarity=0.383  Sum_probs=138.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecCCCCC---CCCCCCCCccc-ccCCCCCCccccCCCCCcCCCCCCCeeec
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFPS---FWSNIPLTSPI-LQRSEHDWQYETAPQANSSGGLKNNVSFW   81 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~~---~~~~~p~~~~~-~~~~~~~w~~~~~p~~~~~~~~~~~~~~~   81 (177)
                      ||||||||+|||++|+||||++  +|||||+|+...   .....|..... +....++|.|.+.||+.    ..++.+.+
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~   76 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGH   76 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEee
Confidence            8999999999999999999987  999999998532   22334432211 22345789999999986    56788999


Q ss_pred             ccceeecCCcccccccccCCChhHHhhhC-----CCCCCchHHHHHHHHhcCCCCCCCCCCccccceeecCCCCCCchhH
Q psy2463          82 PRGKVLGGSGQINLLNHYDGRPEDFEAWG-----PWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATPGLT  156 (177)
Q Consensus        82 ~~g~~lGGsS~in~~~~~R~~~~dfd~w~-----~~W~~~~l~pyf~~~E~~~~~~~~~~~g~~Gpv~v~~~~~~~p~~~  156 (177)
                      ++||+|||||+||+|+|+|+++.|||.|+     ++|+|++|+|||+|+|++.... ..+|+++||+++..+....+..+
T Consensus        77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~-~~~~g~~G~~~v~~~~~~~~~~~  155 (532)
T TIGR01810        77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE-KPYRGHDGPIKVRRGPADNPLFQ  155 (532)
T ss_pred             ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC-cccCCCCCCEEEecCCCCCHHHH
Confidence            99999999999999999999999999996     5899999999999999987643 35789999999999888889999


Q ss_pred             HHHHHHHHcCCcCCCccCC
Q psy2463         157 STIPAIVKSKHYLPKLYHD  175 (177)
Q Consensus       157 ~~~~a~~~~G~~~~~~~~~  175 (177)
                      .|.++++++|++..++...
T Consensus       156 ~~~~a~~~~G~~~~~~~~~  174 (532)
T TIGR01810       156 AFIEAGVEAGYNKTPDVNG  174 (532)
T ss_pred             HHHHHHHHcCCCccCCCCC
Confidence            9999999999988776543

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK02106 choline dehydrogenase; Validated

Probab=100.00  E-value=1.8e-35  Score=265.31  Aligned_cols=165  Identities=32%  Similarity=0.454  Sum_probs=138.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHh-CC-cEEEEecCCCC---CCCCCCCCCccc-ccCCCCCCccccCCCCCcCCCCCCCe
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSL-HH-TVLLIEAGDFP---SFWSNIPLTSPI-LQRSEHDWQYETAPQANSSGGLKNNV   78 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~-~g-~VLvLEaG~~~---~~~~~~p~~~~~-~~~~~~~w~~~~~p~~~~~~~~~~~~   78 (177)
                      .+|||||||||+||+++|.|||| .+ +|||||+|+..   .....+|..... .....++|.|.+.||+.    ..++.
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~~   79 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNRR   79 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCCe
Confidence            45999999999999999999999 57 99999999754   123334432211 12346789999999886    56778


Q ss_pred             eecccceeecCCcccccccccCCChhHHhhhC-----CCCCCchHHHHHHHHhcCCCCCCCCCCccccceeecCC-CCCC
Q psy2463          79 SFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG-----PWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLS-DTAT  152 (177)
Q Consensus        79 ~~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~-----~~W~~~~l~pyf~~~E~~~~~~~~~~~g~~Gpv~v~~~-~~~~  152 (177)
                      +.+++||+|||||+||+|+|.|+.+.|||.|+     ++|+|++|+|||+|+|++... ....|+..||++++.+ ....
T Consensus        80 ~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~-~~~~~g~~gp~~~~~~~~~~~  158 (560)
T PRK02106         80 MECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG-EDDYRGGDGPLSVTRGKPGTN  158 (560)
T ss_pred             eecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC-CccccCCCCCEEEeCCCCCCC
Confidence            99999999999999999999999999999996     689999999999999998743 2346889999999987 6778


Q ss_pred             chhHHHHHHHHHcCCcCCCccC
Q psy2463         153 PGLTSTIPAIVKSKHYLPKLYH  174 (177)
Q Consensus       153 p~~~~~~~a~~~~G~~~~~~~~  174 (177)
                      +..+.|+++++++|++..+++.
T Consensus       159 ~~~~~~~~a~~~lG~~~~~~~~  180 (560)
T PRK02106        159 PLFQAFVEAGVQAGYPRTDDLN  180 (560)
T ss_pred             HHHHHHHHHHHHcCCCcCCCCC
Confidence            9999999999999999877664

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=100.00  E-value=9.1e-36  Score=246.42  Aligned_cols=163  Identities=28%  Similarity=0.357  Sum_probs=129.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCCCCCCCCCC-CcccccCCCCCCccccCCCCCcCCCCCCCeeeccc
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFPSFWSNIPL-TSPILQRSEHDWQYETAPQANSSGGLKNNVSFWPR   83 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~~~~~~~p~-~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~~~   83 (177)
                      |||||||||+||+++|.|||+++  +|||||+|+........+. .........++|.+.+.|+..    .+++.+.+++
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   76 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR   76 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence            89999999999999999999997  8999999998653221111 111222456788888888875    6788888999


Q ss_pred             ceeecCCcccccccccCCChhHHhhhC-----CCCCCchHHHHHHHHhcCCCCCCCCCCccccceee-cCCCCCCchhHH
Q psy2463          84 GKVLGGSGQINLLNHYDGRPEDFEAWG-----PWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRV-SLSDTATPGLTS  157 (177)
Q Consensus        84 g~~lGGsS~in~~~~~R~~~~dfd~w~-----~~W~~~~l~pyf~~~E~~~~~~~~~~~g~~Gpv~v-~~~~~~~p~~~~  157 (177)
                      |++|||||+||+|+++|+++.||+.|.     ++|+|++|+|||+++|++..+. ...|+..+|+++ ..+....|..+.
T Consensus        77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~-~~~~g~~~~~~v~~~~~~~~~~~~~  155 (296)
T PF00732_consen   77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS-SDLHGVDGPLPVSSSPPYPSPMNQA  155 (296)
T ss_dssp             B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB-GGGSCBSSSEEEHHHCSCHCTHHHH
T ss_pred             ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc-ccccccccccccccccCCCCHHHHH
Confidence            999999999999999999999999998     4699999999999999988874 567889999999 667788899999


Q ss_pred             HHHHHHHcCCcCCCccC
Q psy2463         158 TIPAIVKSKHYLPKLYH  174 (177)
Q Consensus       158 ~~~a~~~~G~~~~~~~~  174 (177)
                      |.+|++++|++++.+..
T Consensus       156 ~~~a~~~~G~~~~~~~~  172 (296)
T PF00732_consen  156 LMDAAEELGIPVPQDFN  172 (296)
T ss_dssp             HHHHHHHTTHHBCSCTT
T ss_pred             HHHHHHHcCCccccccc
Confidence            99999999999877654

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=100.00  E-value=9.2e-35  Score=260.04  Aligned_cols=169  Identities=31%  Similarity=0.400  Sum_probs=145.3

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCCC-CCCCCCCcccccCC-CCCCccccCCCCCcCCCCCCCee
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPSF-WSNIPLTSPILQRS-EHDWQYETAPQANSSGGLKNNVS   79 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~p~~~~~~~~~~~~~   79 (177)
                      ...+|||||||+|.|||++|+|||+.+ +|||||+|+.... ..++|..+..+... .++|.|.++++++    ..++.+
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~r~~   79 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPH----LRGREL   79 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccC----CCCccc
Confidence            466799999999999999999999777 9999999986542 45566555444433 7889999999985    788999


Q ss_pred             ecccceeecCCcccccccccCCChhHHhhhC-----CCCCCchHHHHHHHHhcCCCCCC---CCCCccccceeecCCCCC
Q psy2463          80 FWPRGKVLGGSGQINLLNHYDGRPEDFEAWG-----PWFDYGNVSKVLGHIIGYDRKTN---VGNNVEDFPVRVSLSDTA  151 (177)
Q Consensus        80 ~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~-----~~W~~~~l~pyf~~~E~~~~~~~---~~~~g~~Gpv~v~~~~~~  151 (177)
                      .++|+|+|||||+||+|+|+|+++.||+.|.     ++|.|++|+|||+++|++.....   ...|+..||+.+..+...
T Consensus        80 ~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~  159 (542)
T COG2303          80 AWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSP  159 (542)
T ss_pred             cccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCc
Confidence            9999999999999999999999999999996     67999999999999998665421   237899999999988777


Q ss_pred             CchhHHHHHHHHHcCCcCCCccCC
Q psy2463         152 TPGLTSTIPAIVKSKHYLPKLYHD  175 (177)
Q Consensus       152 ~p~~~~~~~a~~~~G~~~~~~~~~  175 (177)
                      .|+...|+++++++|++.+.++-.
T Consensus       160 ~~~~~a~~~a~~~~G~~~~~~~~~  183 (542)
T COG2303         160 NPIARAFIEAGEQLGFPTTPDPNG  183 (542)
T ss_pred             hHHHHHHHHHHHHcCCCcCccccc
Confidence            999999999999999999888753

>PLN02785 Protein HOTHEAD

Probab=99.95  E-value=4.3e-28  Score=218.75  Aligned_cols=141  Identities=22%  Similarity=0.166  Sum_probs=113.3

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCcEEEEecCCCCC--CCCCCCCCcccccCCCCCCccccCCCCCcCCCCCCCeeec
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFPS--FWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFW   81 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~~~--~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~   81 (177)
                      ...|||||||+|+|||++|.||+++.+|||||+|+...  +....+.   .+....++|.|.+.||..    .+++.+.+
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~~~~---~~~~~~~d~~~~~~~q~~----~~~~~~~~  125 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLE---NFHIGLADTSPTSASQAF----ISTDGVIN  125 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhhhHH---hhCCcccccCCccccccc----cCCCceec
Confidence            34699999999999999999999933999999998532  2222221   122345689999999875    46778999


Q ss_pred             ccceeecCCcccccccccCCChhHHhhhCCCCCCchHHHHHHHHhcCCCCCCCCCCccccceeecCCCCCCchhHHHHHH
Q psy2463          82 PRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATPGLTSTIPA  161 (177)
Q Consensus        82 ~~g~~lGGsS~in~~~~~R~~~~dfd~w~~~W~~~~l~pyf~~~E~~~~~~~~~~~g~~Gpv~v~~~~~~~p~~~~~~~a  161 (177)
                      +|||+|||||+||+|+|.|+++.||+.  .+|+|+++.|||+++|+...               ..+. ..|....|++|
T Consensus       126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~--~GW~~~~~~~~~~~~e~~~~---------------~~~~-~~~~~~~~~~a  187 (587)
T PLN02785        126 ARARVLGGGTCINAGFYSRASTRFIQK--AGWDAKLVNESYPWVERQIV---------------HWPK-VAPWQAALRDS  187 (587)
T ss_pred             cccceecchhhhcCeEEEeCCHHHhcc--CCCCcccccchHHHHhcccc---------------cCCC-cChHHHHHHHH
Confidence            999999999999999999999999987  78999999999999997531               1112 35789999999


Q ss_pred             HHHcCCcC
Q psy2463         162 IVKSKHYL  169 (177)
Q Consensus       162 ~~~~G~~~  169 (177)
                      ++++|++.
T Consensus       188 ~~e~G~~~  195 (587)
T PLN02785        188 LLEVGVSP  195 (587)
T ss_pred             HHHcCCCc
Confidence            99999963

>TIGR02462 pyranose_ox pyranose oxidase

Probab=99.61  E-value=1.4e-15  Score=136.26  Aligned_cols=121  Identities=16%  Similarity=0.024  Sum_probs=78.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCCCC-------CCC----CCC-cc-----cccC-------------
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPSFW-------SNI----PLT-SP-----ILQR-------------   55 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~~~-------~~~----p~~-~~-----~~~~-------------   55 (177)
                      ||+||||+|++|+++|..|++++ +|||||+|......       ..+    +.. +.     .+..             
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL   80 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence            79999999999999999999999 99999999754310       000    000 00     0000             


Q ss_pred             CCCCCccccCCCCCcC------CCCCCCee-ecccceeecCCcccccccccCCChhHHhhhC-CCC--CCchHHHHHHHH
Q psy2463          56 SEHDWQYETAPQANSS------GGLKNNVS-FWPRGKVLGGSGQINLLNHYDGRPEDFEAWG-PWF--DYGNVSKVLGHI  125 (177)
Q Consensus        56 ~~~~w~~~~~p~~~~~------~~~~~~~~-~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~-~~W--~~~~l~pyf~~~  125 (177)
                      ....|+-.  |.....      .+.....+ ...|-|+|||+|.||++.+.|.++++- .|- .+|  +|+||+|||.++
T Consensus        81 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g~~~dWPI~y~eL~PyY~~A  157 (544)
T TIGR02462        81 DPTAWSAS--IESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PKLSDDAAEDDAEWDRLYTKA  157 (544)
T ss_pred             CccccccC--CCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cCCCCCCCCCHHHHHHHHHHH
Confidence            00012100  000000      00011112 245789999999999999999999763 333 789  999999999999


Q ss_pred             hcCCC
Q psy2463         126 IGYDR  130 (177)
Q Consensus       126 E~~~~  130 (177)
                      |.+.+
T Consensus       158 e~~~g  162 (544)
T TIGR02462       158 ESLIG  162 (544)
T ss_pred             HHHhC
Confidence            99755

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.66  E-value=2.4e-08  Score=86.39  Aligned_cols=36  Identities=42%  Similarity=0.475  Sum_probs=33.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..||+||||+|+||+++|.+|++.| +|||||++...
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~   38 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP   38 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            3699999999999999999999999 99999998764

>PRK10015 oxidoreductase; Provisional

Probab=98.57  E-value=7.3e-08  Score=84.45  Aligned_cols=36  Identities=39%  Similarity=0.401  Sum_probs=33.4

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +.+||+||||+|+||+++|..||+.| +|+|||++..
T Consensus         3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~   39 (429)
T PRK10015          3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS   39 (429)
T ss_pred             ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            35699999999999999999999999 9999999865

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.55  E-value=8.7e-08  Score=83.88  Aligned_cols=35  Identities=43%  Similarity=0.429  Sum_probs=32.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..||+||||+|+||+++|..|++.| +|+|||++..
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~   39 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS   39 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence            4699999999999999999999999 9999999864

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.45  E-value=1.7e-07  Score=75.21  Aligned_cols=35  Identities=34%  Similarity=0.208  Sum_probs=29.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|++|||+|++|+++|..||+++ +|+|+|+...
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~   51 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS   51 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCC
Confidence            4699999999999999999999999 9999998654

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.43  E-value=2.6e-07  Score=82.47  Aligned_cols=38  Identities=26%  Similarity=0.259  Sum_probs=36.0

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      |++..+||+||||||..|+.+|..||+.| +|+|||++.
T Consensus         1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d   39 (502)
T PRK13369          1 MAEPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD   39 (502)
T ss_pred             CCCCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            77888899999999999999999999999 999999994

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.43  E-value=2.1e-07  Score=76.44  Aligned_cols=38  Identities=29%  Similarity=0.141  Sum_probs=34.4

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +..+||+||||+|++|+++|.+|++.+ +|+|||+....
T Consensus        18 ~~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~   56 (254)
T TIGR00292        18 DYAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAF   56 (254)
T ss_pred             HhcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            345799999999999999999999999 99999998653

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.40  E-value=3.5e-07  Score=74.52  Aligned_cols=33  Identities=42%  Similarity=0.497  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ||+||||+|++|+++|.+|++.| +|+|||+...
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~   34 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF   34 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            79999999999999999999999 9999999965

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK14694 putative mercuric reductase; Provisional

Probab=98.40  E-value=3.5e-07  Score=80.81  Aligned_cols=38  Identities=24%  Similarity=0.282  Sum_probs=36.2

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      |.+.+.||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus         1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          1 MMSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            78899999999999999999999999999 999999874

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.40  E-value=2.8e-07  Score=79.35  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      |||||||+|+||+++|..|++.| +|+|||+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            79999999999999999999999 99999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.40  E-value=3.6e-07  Score=78.47  Aligned_cols=39  Identities=28%  Similarity=0.273  Sum_probs=35.9

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      |.....+|+||||+|++|+++|..|++.| +|+|||+.+.
T Consensus         1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~   40 (392)
T PRK08773          1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP   40 (392)
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence            66778899999999999999999999999 9999999753

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.37  E-value=3.8e-07  Score=79.75  Aligned_cols=34  Identities=26%  Similarity=0.248  Sum_probs=27.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ||+||||+|+||+.+|.+|++.| +|+|||++...
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~   35 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRV   35 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence            89999999999999999999999 99999999875

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.37  E-value=4.3e-07  Score=80.25  Aligned_cols=36  Identities=25%  Similarity=0.221  Sum_probs=32.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .-.||+||||+|+||+++|..||+.| +|+|||+...
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            34699999999999999999999999 9999998753

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.36  E-value=4.7e-07  Score=75.18  Aligned_cols=36  Identities=36%  Similarity=0.290  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      +|||||||+|++|+++|..|++.| +|+|+|+-+...
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~   37 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR   37 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence            489999999999999999999999 999999987653

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.34  E-value=5.5e-07  Score=79.30  Aligned_cols=33  Identities=27%  Similarity=0.278  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ++|+||||+|.+|+.+|.++++.| +|+|||+++
T Consensus         4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~   37 (466)
T PRK08274          4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAP   37 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            389999999999999999999999 999999875

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.34  E-value=4.4e-07  Score=72.98  Aligned_cols=33  Identities=33%  Similarity=0.272  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|+||||+|++|+++|.+||+++ +|+++|+-
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~   62 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERK   62 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEEee
Confidence            3589999999999999999999999 99999994

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.34  E-value=6e-07  Score=80.33  Aligned_cols=38  Identities=26%  Similarity=0.254  Sum_probs=34.8

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      |.+...||+||||||..|+.+|..||+.| +|+|||++.
T Consensus         1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d   39 (508)
T PRK12266          1 MTMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD   39 (508)
T ss_pred             CCCCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            55567799999999999999999999999 999999974

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.33  E-value=5.4e-07  Score=74.06  Aligned_cols=36  Identities=28%  Similarity=0.146  Sum_probs=32.8

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..++|+||||+|+||+++|.+|++.| +|+|||+...
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~   59 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS   59 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            34699999999999999999999999 9999998654

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.30  E-value=5.9e-07  Score=80.01  Aligned_cols=34  Identities=26%  Similarity=0.291  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+|+||||||.+|+++|.+||++| +|+|||+-..
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~   37 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDR   37 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCC
Confidence            589999999999999999999999 9999997543

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.30  E-value=7.5e-07  Score=77.02  Aligned_cols=33  Identities=30%  Similarity=0.305  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      |+||||+|.||+++|.++++.| +|+|||+++..
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~   34 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRL   34 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccc
Confidence            8999999999999999999999 99999999874

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.29  E-value=8.8e-07  Score=76.40  Aligned_cols=37  Identities=32%  Similarity=0.287  Sum_probs=33.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..++|+||||+|++|+++|..|++.| +|+|||+.+..
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            34699999999999999999999999 99999998753

>PRK06185 hypothetical protein; Provisional

Probab=98.29  E-value=9.6e-07  Score=76.06  Aligned_cols=39  Identities=28%  Similarity=0.223  Sum_probs=35.6

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      |....++|+||||+|++|+++|..|++.| +|+|||+.+.
T Consensus         1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            56667899999999999999999999999 9999999753

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.28  E-value=1.1e-06  Score=57.97  Aligned_cols=31  Identities=32%  Similarity=0.379  Sum_probs=27.9

Q ss_pred             EECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463          11 IVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus        11 VVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      |||+|.+|+.+|.+|++.+ +|+|+|+....-
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            8999999999999999999 999999987653

...

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.27  E-value=9.6e-07  Score=73.38  Aligned_cols=31  Identities=42%  Similarity=0.510  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      |+||||+|.+|+.+|.+|++.| +|+|||++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~   32 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD   32 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence            8999999999999999999999 999999993

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.26  E-value=1.1e-06  Score=75.02  Aligned_cols=36  Identities=28%  Similarity=0.263  Sum_probs=33.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+|+||||+|++|+++|..|++.| +|+|||++...
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP   40 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence            4689999999999999999999999 99999998753

>PRK06116 glutathione reductase; Validated

Probab=98.26  E-value=1.1e-06  Score=77.13  Aligned_cols=33  Identities=33%  Similarity=0.335  Sum_probs=31.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ..||+||||+|+||..+|.+|++.| +|+|+|++
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4699999999999999999999999 99999986

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.25  E-value=1.1e-06  Score=74.70  Aligned_cols=34  Identities=18%  Similarity=0.070  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .||+||||+|..|+.+|..|++.| +|+|||++..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence            589999999999999999999999 9999999863

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.24  E-value=1e-06  Score=76.42  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +|+||||+|+||+++|..||+.| +|+|||+-.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~   33 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP   33 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence            58999999999999999999999 999999864

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.24  E-value=1.1e-06  Score=75.26  Aligned_cols=35  Identities=31%  Similarity=0.392  Sum_probs=32.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ...||+||||+|++|+.+|..|++.| +|+|||+.+
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            35699999999999999999999999 999999975

>PRK09126 hypothetical protein; Provisional

Probab=98.23  E-value=1.3e-06  Score=74.86  Aligned_cols=34  Identities=38%  Similarity=0.366  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ++|+||||+|++|+++|..|++.| +|+|||+...
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            489999999999999999999999 9999999875

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.23  E-value=1.2e-06  Score=77.20  Aligned_cols=33  Identities=30%  Similarity=0.356  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ++||+||||+|+||..+|.+|++.| +|+|+|++
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~   34 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK   34 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence            3599999999999999999999999 99999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.22  E-value=1.3e-06  Score=77.22  Aligned_cols=36  Identities=22%  Similarity=0.348  Sum_probs=33.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .+||+||||+|.+||++|.-||.+| +||+||+-...
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~y   39 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYY   39 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCc
Confidence            3599999999999999999999999 99999997654

>PRK07121 hypothetical protein; Validated

Probab=98.21  E-value=1.5e-06  Score=77.22  Aligned_cols=35  Identities=26%  Similarity=0.192  Sum_probs=32.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|+||||+|.||+.+|.++++.| +|+|||+...
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~   54 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG   54 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4799999999999999999999999 9999999865

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.21  E-value=1.5e-06  Score=76.41  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=31.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ++||+||||+|+||..+|.++++.| +|+|+|++
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         1 FDYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            3699999999999999999999999 99999984

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.21  E-value=1.5e-06  Score=76.06  Aligned_cols=33  Identities=36%  Similarity=0.378  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .||+||||||+||..+|.+|++.+ +|+|+|+++
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~   36 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN   36 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence            599999999999999999999999 999999875

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.20  E-value=1.4e-06  Score=76.31  Aligned_cols=33  Identities=39%  Similarity=0.452  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      |+||||||+||+.+|..+|+.| +|||||+++..
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~l   34 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFL   34 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSS
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccC
Confidence            8999999999999999999999 99999998764

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.19  E-value=1.8e-06  Score=76.40  Aligned_cols=34  Identities=29%  Similarity=0.279  Sum_probs=31.8

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +..||+||||+|+||..+|.+|++.| +|+|+|++
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            34699999999999999999999999 99999986

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.19  E-value=1.7e-06  Score=74.02  Aligned_cols=35  Identities=23%  Similarity=0.209  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+|+||||+|++|+++|..|++.| +|+|||+-..
T Consensus         6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            3589999999999999999999999 9999999754

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.19  E-value=1.7e-06  Score=74.76  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +|+||||+|..|+.+|.+|++.| +|+|||++..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~   35 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY   35 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            69999999999999999999999 9999999863

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.19  E-value=1.7e-06  Score=73.53  Aligned_cols=33  Identities=39%  Similarity=0.519  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ||+||||+|.+|+.+|..|++.| +|+|||++..
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL   34 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            69999999999999999999999 9999999753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR02730 carot_isom carotene isomerase

Probab=98.19  E-value=1.9e-06  Score=76.64  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ||+||||+|.+|+++|..||++| +|+|||+....
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~   35 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP   35 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            69999999999999999999999 99999997553

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.19  E-value=1.7e-06  Score=74.02  Aligned_cols=32  Identities=31%  Similarity=0.325  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      |+||||+|+||+.+|.+|++.| +|+|||+.+.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~   33 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP   33 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence            8999999999999999999999 9999998764

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02463 lycopene beta cyclase

Probab=98.19  E-value=1.8e-06  Score=76.33  Aligned_cols=36  Identities=25%  Similarity=0.317  Sum_probs=32.6

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...||+||||+|+||+.+|.+|++.| +|+|||..+.
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence            34689999999999999999999999 9999998653

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.19  E-value=1.7e-06  Score=73.00  Aligned_cols=35  Identities=31%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .+|+||||||.+|+|+|..||+.| +|||||+-...
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HI   36 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI   36 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccC
Confidence            379999999999999999999999 99999997654

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.18  E-value=2.2e-06  Score=77.45  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=32.9

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ....||+||||||..|+.+|..||+.| +|+|||++.
T Consensus         3 ~~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d   39 (546)
T PRK11101          3 DSQETDVIIIGGGATGAGIARDCALRGLRCILVERHD   39 (546)
T ss_pred             CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            345699999999999999999999999 999999964

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.18  E-value=1.7e-06  Score=74.50  Aligned_cols=33  Identities=48%  Similarity=0.557  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHH--HhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRL--SLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rL--a~~g-~VLvLEaG~~~   40 (177)
                      |+||||+|+||+.+|.+|  ++.+ +|||||.....
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  6667 99999998654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PTZ00058 glutathione reductase; Provisional

Probab=98.18  E-value=2e-06  Score=78.01  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=32.4

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+..||+||||+|+||..+|.++++.| +|+|||++
T Consensus        45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            346799999999999999999999999 99999985

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.18  E-value=1.9e-06  Score=74.47  Aligned_cols=36  Identities=31%  Similarity=0.235  Sum_probs=33.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+|+||||+|+||..+|..+++.| +|+|||+++..
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~   38 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKL   38 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccc
Confidence            3689999999999999999999999 99999999864

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.17  E-value=2.2e-06  Score=75.60  Aligned_cols=36  Identities=28%  Similarity=0.244  Sum_probs=32.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      +.++|+||||+|..|+.+|.+|++.  | +|+|||++..
T Consensus        22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            4568999999999999999999997  7 9999999753

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.17  E-value=2.1e-06  Score=72.87  Aligned_cols=33  Identities=30%  Similarity=0.208  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ||+||||+|.+|+.+|.+|++.| +|+|||++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            69999999999999999999999 9999999753

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.17  E-value=2.1e-06  Score=74.31  Aligned_cols=33  Identities=42%  Similarity=0.470  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +|++|||+|++|+++|.+|++.| +|+|||+...
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~   35 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNH   35 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            79999999999999999999999 9999998643

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.17  E-value=2.2e-06  Score=76.66  Aligned_cols=35  Identities=26%  Similarity=0.097  Sum_probs=32.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|+||||+|.||+.+|.++++.| +|+|||+.+.
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~   95 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV   95 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            3689999999999999999999999 9999999765

>PRK06370 mercuric reductase; Validated

Probab=98.16  E-value=2.5e-06  Score=75.18  Aligned_cols=33  Identities=39%  Similarity=0.344  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus         5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~   38 (463)
T PRK06370          5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL   38 (463)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            499999999999999999999999 999999863

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.16  E-value=2.2e-06  Score=74.92  Aligned_cols=33  Identities=30%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +||+||||||+||..+|.+|++.| +|+|+|++.
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~   36 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK   36 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence            599999999999999999999999 999999875

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.15  E-value=2.5e-06  Score=77.41  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=35.6

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      |....++|+||||+|.+|+.+|.++++.| +|+|||+...
T Consensus         4 ~~~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~   43 (574)
T PRK12842          4 MTNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV   43 (574)
T ss_pred             cCcCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            55667899999999999999999999999 9999999864

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.15  E-value=2.4e-06  Score=75.22  Aligned_cols=34  Identities=26%  Similarity=0.323  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            4699999999999999999999999 999999864

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.15  E-value=2.5e-06  Score=77.88  Aligned_cols=34  Identities=26%  Similarity=0.212  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..|||||||||+||+.+|..+|+.| +|+|||...
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~   37 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL   37 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence            4599999999999999999999999 999999875

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.14  E-value=2.4e-06  Score=72.58  Aligned_cols=32  Identities=38%  Similarity=0.344  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      |+||||+|+||+++|..|++.| +|+|+|+.+.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence            8999999999999999999999 9999999975

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07045 putative monooxygenase; Reviewed

Probab=98.14  E-value=2.9e-06  Score=72.79  Aligned_cols=37  Identities=27%  Similarity=0.248  Sum_probs=33.8

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ...+|++|||+|++|+++|.-|++.| +|+|+|+.+..
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            35689999999999999999999999 99999998754

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.14  E-value=2.8e-06  Score=75.23  Aligned_cols=35  Identities=26%  Similarity=0.220  Sum_probs=32.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ++.||+||||+|+||..+|.+|++.| +|+|+|+.+
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~   37 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS   37 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            45699999999999999999999999 999999853

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.14  E-value=2.3e-06  Score=73.76  Aligned_cols=33  Identities=39%  Similarity=0.431  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ++|++|||+|++|+++|..|++.| +|+|||+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            489999999999999999999999 999999876

>PRK08013 oxidoreductase; Provisional

Probab=98.13  E-value=2.7e-06  Score=73.51  Aligned_cols=34  Identities=24%  Similarity=0.132  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+|+||||+|++|+++|..|++.| +|+|||+.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            489999999999999999999999 9999999865

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.12  E-value=3.1e-06  Score=74.39  Aligned_cols=34  Identities=26%  Similarity=0.175  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~   38 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR   38 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence            4599999999999999999999999 999999864

>PLN02985 squalene monooxygenase

Probab=98.12  E-value=2.9e-06  Score=76.21  Aligned_cols=36  Identities=33%  Similarity=0.279  Sum_probs=32.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +..+|+||||+|++|+++|..|++.| +|+|||+...
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            45699999999999999999999999 9999999753

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.12  E-value=3.3e-06  Score=69.07  Aligned_cols=32  Identities=31%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ||+||||+|+||+.+|..|++.+ +|+|+|++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            79999999999999999999999 999999875

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>KOG1298|consensus

Probab=98.11  E-value=2.9e-06  Score=73.24  Aligned_cols=37  Identities=35%  Similarity=0.264  Sum_probs=33.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      ..+|+||||+|.+|+.+|..|+++| +|+|||+--..+
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EP   81 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEP   81 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccc
Confidence            4689999999999999999999999 999999975443

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.11  E-value=3.2e-06  Score=75.63  Aligned_cols=36  Identities=19%  Similarity=0.174  Sum_probs=33.9

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhC--C-cEEEEec
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEA   36 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEa   36 (177)
                      |+++..+|+||||||.+|+++|..|++.  + +|+|||+
T Consensus         1 ~~~~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr   39 (497)
T PRK13339          1 MAKSESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER   39 (497)
T ss_pred             CCCCccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence            6778889999999999999999999997  5 9999999

>PLN02697 lycopene epsilon cyclase

Probab=98.11  E-value=2.9e-06  Score=76.43  Aligned_cols=34  Identities=26%  Similarity=0.143  Sum_probs=31.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..||+||||+|+||+.+|.+|++.| +|+|||.+.
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~  141 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL  141 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence            4699999999999999999999999 999999864

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.11  E-value=3e-06  Score=72.99  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      .+|+||||||.+|+.+|.+|++.  + +|+|||++..
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~   38 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG   38 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            38999999999999999999998  8 9999999864

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.10  E-value=3.2e-06  Score=74.23  Aligned_cols=31  Identities=29%  Similarity=0.319  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      +||+||||+|+||..+|.+|++.| +|+|||+
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~   32 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK   32 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            489999999999999999999999 9999998

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PLN02507 glutathione reductase

Probab=98.10  E-value=3.5e-06  Score=75.34  Aligned_cols=33  Identities=24%  Similarity=0.163  Sum_probs=31.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      .++||+||||+|+||..+|.++++.| +|+|+|.
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            55799999999999999999999999 9999995

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.09  E-value=3.6e-06  Score=75.42  Aligned_cols=35  Identities=26%  Similarity=0.213  Sum_probs=32.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +.++|+||||+| +|+.+|.++++.| +|+|||+...
T Consensus         5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~   40 (513)
T PRK12837          5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK   40 (513)
T ss_pred             CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence            357999999999 9999999999999 9999998764

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.09  E-value=3.6e-06  Score=72.54  Aligned_cols=31  Identities=42%  Similarity=0.497  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHhC--C-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH--H-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~   38 (177)
                      |+||||+|+||+.+|.+|++.  + +|+|||+++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~   34 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR   34 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            899999999999999999997  7 999999987

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR02053 MerA mercuric reductase

Probab=98.09  E-value=3.8e-06  Score=74.02  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            79999999999999999999999 999999853

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.08  E-value=3.9e-06  Score=74.22  Aligned_cols=31  Identities=26%  Similarity=0.202  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      .||+||||+|+||..+|.++++.| +|+|+|+
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~   34 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEG   34 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            399999999999999999999999 9999996

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.08  E-value=4.4e-06  Score=71.22  Aligned_cols=38  Identities=29%  Similarity=0.296  Sum_probs=34.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      ..++|+||||+|.||+|+|++||+.| +||+||.-+..+
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqn   41 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQN   41 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccc
Confidence            56899999999999999999999999 999999876543

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.08  E-value=4e-06  Score=72.03  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+|++|||+|++|+++|..|++.| +|+|+|+-+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            389999999999999999999999 999999764

>KOG0029|consensus

Probab=98.07  E-value=4.2e-06  Score=74.96  Aligned_cols=36  Identities=33%  Similarity=0.330  Sum_probs=32.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ....+|||||||.||+.+|..|.+.| +|+||||-.+
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR   49 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR   49 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCC
Confidence            34679999999999999999999999 9999999544

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.07  E-value=4.5e-06  Score=75.12  Aligned_cols=38  Identities=29%  Similarity=0.343  Sum_probs=34.6

Q ss_pred             CCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           2 PTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         2 ~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+..++||+|||+|++|+++|..|++.| +|+|||+-+.
T Consensus        19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~   57 (547)
T PRK08132         19 DDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT   57 (547)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            4457899999999999999999999999 9999998864

>PTZ00367 squalene epoxidase; Provisional

Probab=98.07  E-value=4.1e-06  Score=76.07  Aligned_cols=35  Identities=40%  Similarity=0.386  Sum_probs=32.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +.++|+||||+|++|+++|..|++.| +|+|||+..
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            46799999999999999999999999 999999975

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.07  E-value=4.4e-06  Score=76.69  Aligned_cols=35  Identities=26%  Similarity=0.199  Sum_probs=32.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ...||+||||||..|+.+|..||..| +|+|||++.
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d  104 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVERED  104 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence            34599999999999999999999999 999999984

>PRK13748 putative mercuric reductase; Provisional

Probab=98.07  E-value=4.4e-06  Score=75.20  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=31.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ..||+||||+|+||..+|.+|++.| +|+|+|++
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~  130 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            3699999999999999999999999 99999986

>PRK08244 hypothetical protein; Provisional

Probab=98.06  E-value=4.9e-06  Score=73.83  Aligned_cols=35  Identities=29%  Similarity=0.292  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ++||+|||+|++|+++|..|++.| +|+|||+.+..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            489999999999999999999999 99999997653

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.05  E-value=5e-06  Score=75.04  Aligned_cols=34  Identities=35%  Similarity=0.374  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .++|+||||+|.||+.+|.++++.| +|+|||+++
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4699999999999999999999999 999999988

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.05  E-value=4.5e-06  Score=71.36  Aligned_cols=33  Identities=45%  Similarity=0.309  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC---C-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH---H-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~---g-~VLvLEaG   37 (177)
                      ..+|+||||+|++|+++|..|++.   | +|+|||+-
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            358999999999999999999998   9 99999994

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.04  E-value=5.2e-06  Score=73.28  Aligned_cols=32  Identities=25%  Similarity=0.238  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .||+||||+|+||..+|.+|++.| +|+|+|++
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            599999999999999999999999 99999986

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.04  E-value=5.5e-06  Score=73.43  Aligned_cols=34  Identities=32%  Similarity=0.396  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -|+||||||.+|+++|.+|+++| +|+|||+....
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~   36 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP   36 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            48999999999999999999999 99999987543

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.03  E-value=6.1e-06  Score=75.21  Aligned_cols=35  Identities=23%  Similarity=0.097  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++||||||+|.||+.+|.++++.| +|+|||.+..
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~   41 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP   41 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            4689999999999999999999999 9999999854

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.03  E-value=5.8e-06  Score=72.67  Aligned_cols=32  Identities=41%  Similarity=0.438  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .||+||||+|+||..+|.+|++.+ +|+|||++
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            499999999999999999999999 99999983

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.03  E-value=5.2e-06  Score=71.23  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      ||+||||+|++|+++|..|++.  + +|+|||+.+.
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            8999999999999999999997  5 9999999864

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.03  E-value=5.8e-06  Score=75.31  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=33.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..++|+||||+|.||+.+|.++++.| +|+|||++..
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~   45 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH   45 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence            45799999999999999999999999 9999998864

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.03  E-value=6.3e-06  Score=74.56  Aligned_cols=34  Identities=26%  Similarity=0.260  Sum_probs=31.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..||+||||||+||+.+|.+|++.+ +|+|||++.
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~   37 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD   37 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            4599999999999999999999999 999999864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK07190 hypothetical protein; Provisional

Probab=98.02  E-value=6.6e-06  Score=73.35  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=32.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+|+||||+|++|+++|..|++.| +|+|||+-+..
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            4589999999999999999999999 99999998643

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.02  E-value=5.9e-06  Score=73.84  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=30.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      ++.||+||||+|+||..+|.+|++.| +|+|||+
T Consensus         3 ~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~   36 (499)
T PTZ00052          3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDY   36 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            34699999999999999999999999 9999996

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.01  E-value=8.2e-06  Score=73.33  Aligned_cols=37  Identities=35%  Similarity=0.257  Sum_probs=33.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ...+||||||+|++|+++|..|++.| +|+|||+....
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~   45 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL   45 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            34799999999999999999999999 99999998643

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.01  E-value=5.1e-06  Score=72.77  Aligned_cols=32  Identities=41%  Similarity=0.462  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHh----CC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSL----HH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~----~g-~VLvLEaG~   38 (177)
                      ||+||||+|++|+++|..|++    .| +|+|||+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            799999999999999999999    78 999999943

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.01  E-value=6.5e-06  Score=70.91  Aligned_cols=34  Identities=29%  Similarity=0.402  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ++|++|||+|++|+++|..|++.| +|+|||+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            589999999999999999999999 9999999874

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.01  E-value=7.2e-06  Score=70.75  Aligned_cols=35  Identities=29%  Similarity=0.215  Sum_probs=31.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhC-C--cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLH-H--TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG~   38 (177)
                      ...+|+||||+|..|+.+|..|++. |  +|+|||++.
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            4569999999999999999999984 7  799999975

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.01  E-value=7e-06  Score=74.48  Aligned_cols=35  Identities=20%  Similarity=0.134  Sum_probs=32.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++||||||+|.||+.+|.++++.| +|+|||++..
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~   39 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP   39 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence            5699999999999999999999999 9999999854

>PRK06847 hypothetical protein; Provisional

Probab=98.00  E-value=7.4e-06  Score=69.65  Aligned_cols=37  Identities=30%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      |+.  ..|+||||+|++|+++|..|++.| +|+|+|+-..
T Consensus         1 m~~--~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          1 MAA--VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             CCC--cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            454  579999999999999999999999 9999998754

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.00  E-value=6.9e-06  Score=74.10  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=33.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..++|+||||+|.||+.+|.++++.| +|+|||++..
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~   50 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL   50 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence            34699999999999999999999999 9999999864

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.00  E-value=7.2e-06  Score=74.87  Aligned_cols=36  Identities=19%  Similarity=-0.011  Sum_probs=32.8

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..++||||||+|.||+.+|.++++.| +|+|||++..
T Consensus        10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~   46 (598)
T PRK09078         10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP   46 (598)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            34699999999999999999999999 9999999753

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.00  E-value=7e-06  Score=72.75  Aligned_cols=32  Identities=34%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      ..||+||||+|+||+.+|.+|++.+ +|+|||+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            4699999999999999999999999 9999998

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.99  E-value=6.8e-06  Score=70.42  Aligned_cols=32  Identities=22%  Similarity=0.304  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +|+||||+|++|+++|..|++.| +|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            79999999999999999999999 999999874

>PRK08275 putative oxidoreductase; Provisional

Probab=97.98  E-value=7.5e-06  Score=74.02  Aligned_cols=35  Identities=29%  Similarity=0.333  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      .++||||||+|.||+.+|.++++.  + +|+|||++..
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            469999999999999999999986  6 9999999864

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.98  E-value=7.4e-06  Score=70.63  Aligned_cols=32  Identities=41%  Similarity=0.429  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+|++|||+|++|+++|..|++.| +|+|||+-
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            579999999999999999999999 99999997

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.98  E-value=6.8e-06  Score=71.00  Aligned_cols=32  Identities=28%  Similarity=0.353  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+|++|||+|++|+++|..|++.| +|+|||+-
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            489999999999999999999999 99999985

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.97  E-value=9.1e-06  Score=69.12  Aligned_cols=36  Identities=28%  Similarity=0.281  Sum_probs=33.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+|+||||+|..|+.+|..|++.| +|+|||++...
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~   39 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG   39 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence            4589999999999999999999999 99999998753

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.97  E-value=8e-06  Score=74.88  Aligned_cols=35  Identities=26%  Similarity=-0.021  Sum_probs=32.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++||||||+|.||+.+|.++++.| +|+|||++..
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~   63 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP   63 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence            4689999999999999999999999 9999999864

>PRK06184 hypothetical protein; Provisional

Probab=97.97  E-value=8e-06  Score=72.70  Aligned_cols=35  Identities=37%  Similarity=0.385  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .+||+|||+|++|+++|..|++.| +|+|||+-+..
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            489999999999999999999999 99999997543

>PRK07588 hypothetical protein; Provisional

Probab=97.97  E-value=9e-06  Score=69.79  Aligned_cols=33  Identities=36%  Similarity=0.228  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      |+||||+|++|+++|..|++.| +|+|+|+.+..
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL   35 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence            7999999999999999999999 99999998653

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.97  E-value=7.7e-06  Score=72.97  Aligned_cols=33  Identities=18%  Similarity=0.152  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-C-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH-H-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG   37 (177)
                      ..||+||||+|+||..+|.++|+. | +|+|+|++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            469999999999999999999996 8 99999973

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06834 hypothetical protein; Provisional

Probab=97.97  E-value=7.9e-06  Score=72.86  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+|+||||+|++|+++|..|++.| +|+|||+-+.
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            489999999999999999999999 9999998754

>PLN02661 Putative thiazole synthesis

Probab=97.96  E-value=8.3e-06  Score=69.99  Aligned_cols=37  Identities=38%  Similarity=0.286  Sum_probs=32.7

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhC-C-cEEEEecCCC
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLH-H-TVLLIEAGDF   39 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG~~   39 (177)
                      ...++|+||||+|++|+.+|..|++. + +|+|||++..
T Consensus        89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~  127 (357)
T PLN02661         89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS  127 (357)
T ss_pred             hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence            34578999999999999999999986 6 9999999754

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.96  E-value=8.5e-06  Score=74.81  Aligned_cols=35  Identities=23%  Similarity=0.122  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++||||||+|.||+.+|.++++.| +|+|||++..
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~   42 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF   42 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence            4689999999999999999999999 9999999753

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.96  E-value=8.4e-06  Score=70.41  Aligned_cols=34  Identities=24%  Similarity=0.329  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+|++|||+|++|+++|..|++.| +|+|||+-+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            479999999999999999999999 9999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.96  E-value=6.7e-06  Score=73.03  Aligned_cols=32  Identities=38%  Similarity=0.538  Sum_probs=29.6

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +||||||.+|+++|.+|+++| +|+|||+-...
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~   33 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP   33 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            699999999999999999999 99999997653

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02576 protoporphyrinogen oxidase

Probab=97.96  E-value=1e-05  Score=71.63  Aligned_cols=37  Identities=32%  Similarity=0.303  Sum_probs=33.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhC-C-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLH-H-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG~~~   40 (177)
                      ...+|+||||||.+|+++|.+|++. | +|+|||+....
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rv   48 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRV   48 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence            3467999999999999999999999 9 99999997654

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.95  E-value=1.1e-05  Score=72.97  Aligned_cols=36  Identities=22%  Similarity=0.213  Sum_probs=33.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..++|+||||+|.+|+++|.++++.| +|+|||+...
T Consensus         5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~   41 (557)
T PRK07843          5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH   41 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            45799999999999999999999999 9999999754

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.95  E-value=9.8e-06  Score=71.77  Aligned_cols=35  Identities=34%  Similarity=0.353  Sum_probs=32.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ...||+||||+|+||-++|.|+|+.| +|+|+|+++
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~   37 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE   37 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            35799999999999999999999999 999999995

>PRK06126 hypothetical protein; Provisional

Probab=97.95  E-value=1.1e-05  Score=72.56  Aligned_cols=36  Identities=31%  Similarity=0.287  Sum_probs=33.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...+||+|||+|++|+++|..|++.| +|+|||+-+.
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            45699999999999999999999999 9999998754

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.95  E-value=9.7e-06  Score=73.93  Aligned_cols=35  Identities=23%  Similarity=0.074  Sum_probs=32.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++||||||+|.||+.+|.++++.| +|+|||++..
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~   46 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP   46 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            3589999999999999999999999 9999999743

>PLN02546 glutathione reductase

Probab=97.95  E-value=9.3e-06  Score=73.64  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=30.8

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      .++||+||||+|+||..+|.++++.| +|+|+|.
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            34699999999999999999999999 9999995

>PLN02268 probable polyamine oxidase

Probab=97.94  E-value=1e-05  Score=70.43  Aligned_cols=33  Identities=30%  Similarity=0.323  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ++||||+|.+|+.+|.+|.+.| +|+||||..+.
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~   35 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRI   35 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            7999999999999999999999 99999997654

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.94  E-value=9.3e-06  Score=71.34  Aligned_cols=35  Identities=29%  Similarity=0.418  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++||||||+|.||+.+|.+++ .+ +|+|||++...
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~   38 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN   38 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence            5799999999999999999974 68 99999998653

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.94  E-value=9.1e-06  Score=74.36  Aligned_cols=35  Identities=29%  Similarity=0.369  Sum_probs=32.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      .++||||||+|.||+.+|.++++.  | +|+|||++..
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~   47 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI   47 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence            368999999999999999999998  8 9999999753

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.94  E-value=1e-05  Score=69.86  Aligned_cols=32  Identities=22%  Similarity=0.188  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      |+||||+|.+|+.+|.+|++.+ +|+|||++..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            7999999999999999999999 9999999853

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.93  E-value=9.4e-06  Score=74.78  Aligned_cols=33  Identities=36%  Similarity=0.437  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+|+||||||.+|+.+|..|++.| +|+|||++.
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            479999999999999999999999 999999985

>PRK10262 thioredoxin reductase; Provisional

Probab=97.93  E-value=1.3e-05  Score=67.13  Aligned_cols=37  Identities=30%  Similarity=0.221  Sum_probs=33.5

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      |-+-..+|++|||+|+||+.+|..|++.+ +|+++|..
T Consensus         1 ~~~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~   38 (321)
T PRK10262          1 MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   38 (321)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence            55667899999999999999999999999 99999864

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.93  E-value=1.2e-05  Score=72.93  Aligned_cols=36  Identities=22%  Similarity=0.170  Sum_probs=32.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +.++|+||||+|.+|+.+|.+|++.| +|+|||+...
T Consensus         4 d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~   40 (557)
T PRK12844          4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDK   40 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            35799999999999999999999999 9999998754

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.92  E-value=1.1e-05  Score=71.47  Aligned_cols=32  Identities=34%  Similarity=0.355  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +|+||||+|.||+.+|.++++.| +|+|||++.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            79999999999999999999999 999999975

>PRK07236 hypothetical protein; Provisional

Probab=97.92  E-value=1.5e-05  Score=68.46  Aligned_cols=37  Identities=16%  Similarity=0.035  Sum_probs=33.1

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .-...|+||||||++|+++|.-|++.| +|+|+|+.+.
T Consensus         3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          3 HMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            334589999999999999999999999 9999999763

>PRK06753 hypothetical protein; Provisional

Probab=97.92  E-value=1.2e-05  Score=68.34  Aligned_cols=33  Identities=27%  Similarity=0.286  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      |+||||||++|+++|..|++.| +|+|+|+.+..
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~   35 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV   35 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            7999999999999999999999 99999998753

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.92  E-value=1.1e-05  Score=72.01  Aligned_cols=33  Identities=27%  Similarity=0.276  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      +|+||||||.+|+++|.+|++.  + +|+|||++..
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~   36 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA   36 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            6999999999999999999996  6 9999999763

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.92  E-value=1.1e-05  Score=74.11  Aligned_cols=35  Identities=31%  Similarity=0.087  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++||||||+|.||+.+|.++++.| +|+|||.+..
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~   84 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP   84 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence            4689999999999999999999999 9999999864

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.91  E-value=1.3e-05  Score=68.38  Aligned_cols=33  Identities=39%  Similarity=0.328  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      |+||||+|++|+++|..|++.|  +|+|+|+....
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            8999999999999999999998  99999998654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.90  E-value=1.4e-05  Score=73.62  Aligned_cols=34  Identities=26%  Similarity=0.141  Sum_probs=31.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .++||||||+|.||+.+|.++++.| +|+|||...
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~   68 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD   68 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence            4689999999999999999999999 999999743

>PRK07208 hypothetical protein; Provisional

Probab=97.90  E-value=1.4e-05  Score=70.39  Aligned_cols=34  Identities=32%  Similarity=0.331  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..|+||||||.+|+++|.+|++.| +|+|||+...
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~   38 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPV   38 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            468999999999999999999999 9999999654

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.90  E-value=1.3e-05  Score=69.99  Aligned_cols=33  Identities=27%  Similarity=0.190  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      |+||||+|.||+.+|.++++.|  +|+|||+.+..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~   35 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI   35 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence            8999999999999999999998  99999998653

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.90  E-value=1.6e-05  Score=68.20  Aligned_cols=34  Identities=29%  Similarity=0.301  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..|+||||+|++|+++|..|++.| +|+|+|+.+.
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            479999999999999999999999 9999999764

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.90  E-value=1.2e-05  Score=72.63  Aligned_cols=32  Identities=28%  Similarity=0.097  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ||||||+|.||+.+|.++++.| +|+|||++..
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~   33 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP   33 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            8999999999999999999999 9999999763

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.90  E-value=1.4e-05  Score=69.93  Aligned_cols=34  Identities=29%  Similarity=0.330  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhC----C-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLH----H-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~----g-~VLvLEaG~~~   40 (177)
                      .|+||||||.+|+++|.+|++.    | +|+|||+....
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~   41 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV   41 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence            6899999999999999999998    9 99999997653

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK14727 putative mercuric reductase; Provisional

Probab=97.88  E-value=1.6e-05  Score=70.55  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=32.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ...||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~   49 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD   49 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            34699999999999999999999999 999999873

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.87  E-value=1.5e-05  Score=73.61  Aligned_cols=36  Identities=17%  Similarity=0.165  Sum_probs=33.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+||||||+|.||+.+|.++++.| +|+|||.....
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~   40 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK   40 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            4689999999999999999999999 99999987653

>PRK07233 hypothetical protein; Provisional

Probab=97.87  E-value=1.8e-05  Score=68.23  Aligned_cols=33  Identities=39%  Similarity=0.409  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ++||||+|.+|+++|..|++.| +|+|||+....
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~   34 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQL   34 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence            5899999999999999999999 99999998754

>PLN02676 polyamine oxidase

Probab=97.87  E-value=1.7e-05  Score=70.74  Aligned_cols=40  Identities=35%  Similarity=0.346  Sum_probs=34.8

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      |.....+|+||||+|.+|+.+|.+|++.|  +|+|||+..+.
T Consensus        21 ~~~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~   62 (487)
T PLN02676         21 MDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI   62 (487)
T ss_pred             hcccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence            44456789999999999999999999999  49999997654

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.87  E-value=1.7e-05  Score=61.56  Aligned_cols=31  Identities=39%  Similarity=0.542  Sum_probs=26.0

Q ss_pred             EEECCChHHHHHHHHHHhCC-c-EEEEecCCCC
Q psy2463          10 NIVGAGTAGCVLANRLSLHH-T-VLLIEAGDFP   40 (177)
Q Consensus        10 IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~~~   40 (177)
                      ||||+|++|+.+|.+|.+.| + |+|||++...
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~   33 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRP   33 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSS
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC
Confidence            79999999999999999999 6 9999998654

...

>PLN02815 L-aspartate oxidase

Probab=97.87  E-value=1.7e-05  Score=72.52  Aligned_cols=36  Identities=22%  Similarity=0.148  Sum_probs=32.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCcEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~   39 (177)
                      ..++||||||+|.||+.+|.++++.++|+|||.+..
T Consensus        27 ~~~~DVlVVG~G~AGl~AAl~Aae~G~VvlleK~~~   62 (594)
T PLN02815         27 TKYFDFLVIGSGIAGLRYALEVAEYGTVAIITKDEP   62 (594)
T ss_pred             ccccCEEEECccHHHHHHHHHHhhCCCEEEEECCCC
Confidence            346899999999999999999999889999999764

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.87  E-value=1.6e-05  Score=73.43  Aligned_cols=32  Identities=19%  Similarity=0.206  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +||+||||+|+||..+|.++++.| +|+|+|.+
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            799999999999999999999999 99999964

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.86  E-value=1.6e-05  Score=72.55  Aligned_cols=34  Identities=21%  Similarity=0.129  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..||||||+|.||+.+|.++++.| +|+|||++..
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~   37 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPV   37 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            359999999999999999999999 9999997653

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.86  E-value=1.5e-05  Score=72.36  Aligned_cols=35  Identities=26%  Similarity=0.255  Sum_probs=31.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      .++||||||+|.||+.+|.++++.  + +|+|||++..
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~   39 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP   39 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence            458999999999999999999986  5 9999999854

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.86  E-value=1.5e-05  Score=71.81  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=31.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..++|+||||+|.||+.+|.++ +.| +|+|||++..
T Consensus         5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~   40 (543)
T PRK06263          5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF   40 (543)
T ss_pred             eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence            3568999999999999999999 889 9999999753

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.86  E-value=1.7e-05  Score=70.89  Aligned_cols=36  Identities=19%  Similarity=0.187  Sum_probs=31.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      +..+|+||||||..|+++|..|++.  + +|+|||+...
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~   41 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG   41 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            4569999999999999999999985  5 9999998754

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.85  E-value=1.9e-05  Score=70.69  Aligned_cols=36  Identities=31%  Similarity=0.283  Sum_probs=32.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhC-C--cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLH-H--TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG~~   39 (177)
                      +..+|+||||||..|+.+|..|++. +  +|+|||+...
T Consensus        43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~   81 (497)
T PTZ00383         43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD   81 (497)
T ss_pred             CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence            4579999999999999999999995 4  8999999853

>PRK12839 hypothetical protein; Provisional

Probab=97.85  E-value=2.1e-05  Score=71.49  Aligned_cols=36  Identities=22%  Similarity=0.208  Sum_probs=33.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..++|+||||+|.+|+++|..|++.+ +|+|||++..
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~   42 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAST   42 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            55799999999999999999999999 9999998754

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.85  E-value=1.8e-05  Score=72.73  Aligned_cols=36  Identities=33%  Similarity=0.250  Sum_probs=32.4

Q ss_pred             CccccEEEECCChHHHHHHHHHHh-CC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSL-HH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~-~g-~VLvLEaG~~   39 (177)
                      ..++||+|||+|++|+++|..|++ .| +|+|||+-+.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            347999999999999999999999 59 9999998754

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.84  E-value=2e-05  Score=68.41  Aligned_cols=33  Identities=33%  Similarity=0.407  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      ++||||||.||+++|.+|++.|   +|+|||+....
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~   37 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRL   37 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence            5899999999999999999965   89999996543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.83  E-value=1.9e-05  Score=70.34  Aligned_cols=33  Identities=21%  Similarity=0.247  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +.||+||||+|+||..+|.++++.| +|+|||++
T Consensus         1 ~~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         1 YDYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4699999999999999999999999 99999963

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.83  E-value=2.1e-05  Score=69.17  Aligned_cols=33  Identities=24%  Similarity=0.214  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +||+||||+|.+|+.+|.+|++.+ +|+|||+|.
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            489999999999999999999999 999999985

>PRK11445 putative oxidoreductase; Provisional

Probab=97.82  E-value=2e-05  Score=67.05  Aligned_cols=32  Identities=31%  Similarity=0.371  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCcEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHHTVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~   38 (177)
                      ||++|||+|+||+++|..|++.-+|+|||+-+
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~   33 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKH   33 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhccCCEEEEECCC
Confidence            89999999999999999998755999999875

>PRK06996 hypothetical protein; Provisional

Probab=97.81  E-value=2.2e-05  Score=67.79  Aligned_cols=35  Identities=34%  Similarity=0.365  Sum_probs=31.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-----cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-----TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-----~VLvLEaG~   38 (177)
                      ...+|++|||+|++|+++|..|++.|     +|+|||+..
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            34589999999999999999999874     699999975

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.81  E-value=2.1e-05  Score=71.27  Aligned_cols=35  Identities=31%  Similarity=0.238  Sum_probs=31.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..++||||||+|.||+.+|.++++ | +|+|||++..
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~   42 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTL   42 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCC
Confidence            456999999999999999999864 8 9999999764

>PRK07538 hypothetical protein; Provisional

Probab=97.80  E-value=2.4e-05  Score=67.85  Aligned_cols=32  Identities=31%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      |+||||+|++|+++|..|++.| +|+|+|+.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            8999999999999999999999 9999999764

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.80  E-value=2.6e-05  Score=70.80  Aligned_cols=35  Identities=23%  Similarity=0.287  Sum_probs=31.8

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..++|+||||+| +|.++|.+.++.| +|+|||+...
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~   49 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSY   49 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCC
Confidence            458999999999 8999999999999 9999998754

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.80  E-value=2.7e-05  Score=60.16  Aligned_cols=31  Identities=35%  Similarity=0.383  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      |+||||+|+||..+|.+|++.+ +|+|+|..+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            7999999999999999999989 999997765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.78  E-value=2.9e-05  Score=75.87  Aligned_cols=36  Identities=28%  Similarity=0.337  Sum_probs=33.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...+||||||+|.||+.+|.+.++.| +|+|||+++.
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~  443 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK  443 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence            45699999999999999999999999 9999999864

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=2.9e-05  Score=65.44  Aligned_cols=34  Identities=29%  Similarity=0.365  Sum_probs=30.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-c-EEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-T-VLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~   38 (177)
                      ..||+||||||+||+.+|-.+++.+ + +||+|.+.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~   37 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE   37 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            3699999999999999999999999 7 78888763

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.77  E-value=3.2e-05  Score=67.87  Aligned_cols=36  Identities=36%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+..|+||||+|.+|+++|.+|.+.| +|+|||+-.+
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r   41 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDR   41 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCC
Confidence            56799999999999999999999999 9999999654

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.77  E-value=2.5e-05  Score=70.01  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++||||||+|.||+.+|.++++ + +|+|||++..
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~   36 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK   36 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence            36899999999999999999987 8 9999999864

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.75  E-value=3.5e-05  Score=69.44  Aligned_cols=36  Identities=36%  Similarity=0.471  Sum_probs=31.6

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCcEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~   39 (177)
                      ..++||||||+|.||+.+|.++++..+|+|||++..
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~   41 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPL   41 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCC
Confidence            456899999999999999999987449999999864

>TIGR00551 nadB L-aspartate oxidase

Probab=97.74  E-value=3.4e-05  Score=68.68  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCcEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~   39 (177)
                      ++|+||||+|.||+.+|.++++.+.|+|||++..
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~V~lleK~~~   35 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGRVIVLSKAPV   35 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCCEEEEEccCC
Confidence            5899999999999999999999878999999854

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.74  E-value=3.3e-05  Score=70.35  Aligned_cols=35  Identities=26%  Similarity=0.190  Sum_probs=31.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      .++||||||+|.||+.+|.++++.  + +|+|||++..
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~   40 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYP   40 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence            468999999999999999999986  4 9999999753

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.72  E-value=3.6e-05  Score=69.91  Aligned_cols=36  Identities=22%  Similarity=0.115  Sum_probs=32.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC----cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH----TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g----~VLvLEaG~~   39 (177)
                      ..++||||||+|.||+.+|.++++.|    +|+|||++..
T Consensus         3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~   42 (577)
T PRK06069          3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP   42 (577)
T ss_pred             ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence            34689999999999999999999974    8999998764

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.72  E-value=3.3e-05  Score=70.34  Aligned_cols=35  Identities=29%  Similarity=0.149  Sum_probs=31.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      .++|+||||+|.||+.+|.++++.  + +|+|||++..
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~   39 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP   39 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence            468999999999999999999986  5 9999999754

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.72  E-value=4.3e-05  Score=68.50  Aligned_cols=33  Identities=18%  Similarity=0.103  Sum_probs=30.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      ...||++|||||+||+.+|.+|++.| +|+|+|.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~  242 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE  242 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            44699999999999999999999999 9999986

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.71  E-value=3.8e-05  Score=70.42  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHH----hCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLS----LHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa----~~g-~VLvLEaG~~   39 (177)
                      ||||||||.||+.+|.+++    +.| +|+|||++..
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence            8999999999999999998    678 9999999763

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.70  E-value=4e-05  Score=73.10  Aligned_cols=35  Identities=31%  Similarity=0.366  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|+||||+|.||+.+|.++++.| +|+|||++..
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            4689999999999999999999999 9999999764

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.69  E-value=4.6e-05  Score=69.40  Aligned_cols=35  Identities=23%  Similarity=0.010  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCcEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~   39 (177)
                      .++|+||||+|.||+.+|.++++..+|+|||++..
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~~~VilleK~~~   38 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYP   38 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhCCCEEEEeCCCC
Confidence            56999999999999999999986449999999753

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.68  E-value=5.8e-05  Score=66.97  Aligned_cols=34  Identities=32%  Similarity=0.397  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+++|||+|++|+++|.+|.+.| +|+|+|++..
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~   44 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ   44 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            479999999999999999999999 9999999764

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.67  E-value=5.9e-05  Score=68.67  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=32.8

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..++|+||||+|.+|+.+|.++++.| +|+|||+...
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~   46 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPV   46 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            45799999999999999999999999 9999998653

>PRK05868 hypothetical protein; Validated

Probab=97.67  E-value=5.5e-05  Score=64.98  Aligned_cols=33  Identities=27%  Similarity=0.230  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      |++|||+|++|+++|..|++.| +|+|+|+-+..
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            8999999999999999999999 99999987653

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.66  E-value=5.9e-05  Score=66.37  Aligned_cols=34  Identities=32%  Similarity=0.329  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -|++|||||.+|+.+|..||+.| +|.|+|..+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            48999999999999999999999 99999987654

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.65  E-value=5.3e-05  Score=68.81  Aligned_cols=37  Identities=19%  Similarity=0.036  Sum_probs=34.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..++|+||||+|.||+.+|.++++.| +|+|||.....
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~   41 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK   41 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence            45799999999999999999999999 99999998754

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.65  E-value=5.2e-05  Score=65.93  Aligned_cols=27  Identities=41%  Similarity=0.469  Sum_probs=25.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEE
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLI   34 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvL   34 (177)
                      ||||||+|.|||.+|..+|+.| +|+||
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Li   28 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLI   28 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            8999999999999999999999 99999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.64  E-value=6.2e-05  Score=67.71  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=33.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+|+||||||..|+=+|..+|-.| +|+|+|++.--
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~A   47 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLA   47 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCccc
Confidence            6799999999999999999999999 99999999743

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.63  E-value=6.4e-05  Score=67.38  Aligned_cols=33  Identities=18%  Similarity=0.095  Sum_probs=30.3

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      ...||++|||||+||..+|.+|++.| +|+|+|.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~  243 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE  243 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            44699999999999999999999999 9999975

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.61  E-value=7.5e-05  Score=65.45  Aligned_cols=32  Identities=38%  Similarity=0.389  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +++|||+|.+|+++|.+|+++| +|+|||+.+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~   33 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDV   33 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4899999999999999999999 9999999764

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.61  E-value=7e-05  Score=65.80  Aligned_cols=33  Identities=18%  Similarity=0.329  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHhC------C-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH------H-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~------g-~VLvLEaG~~~   40 (177)
                      ++||||||.+|+++|.+|++.      + +|+|||+-.+.
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~   42 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYL   42 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCc
Confidence            589999999999999999984      5 89999997653

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.57  E-value=9e-05  Score=61.52  Aligned_cols=32  Identities=38%  Similarity=0.335  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +++|||+|.+|+++|..|++.| +|+|+|+|.-
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G   35 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG   35 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence            6899999999999999999999 9999999864

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.56  E-value=0.00011  Score=66.96  Aligned_cols=35  Identities=29%  Similarity=0.314  Sum_probs=32.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|+||||+|.+|+.+|.++++.| +|+|||+...
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~   50 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEY   50 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4689999999999999999999999 9999998653

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.55  E-value=9.5e-05  Score=64.89  Aligned_cols=33  Identities=33%  Similarity=0.305  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ||++|||+|.+|+.+|.+|++.+ +|+|||.|..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~   34 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS   34 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence            69999999999999999999999 9999999963

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.55  E-value=9.5e-05  Score=65.21  Aligned_cols=31  Identities=32%  Similarity=0.427  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ++||||+|+||..+|.+|++.| +|+|||++.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence            6899999999999999999999 999999864

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.55  E-value=0.0001  Score=65.11  Aligned_cols=35  Identities=26%  Similarity=0.270  Sum_probs=32.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-c-EEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-T-VLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~~   39 (177)
                      ..+|++|||+|++|+.+|.+|.+.+ . +++||+...
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~   43 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD   43 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC
Confidence            4589999999999999999999999 6 999999863

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.54  E-value=9.3e-05  Score=63.90  Aligned_cols=33  Identities=33%  Similarity=0.334  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      -+++|||||++|+++|.-|++.| +|.|+|+-+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            46999999999999999999999 9999998754

>PRK07846 mycothione reductase; Reviewed

Probab=97.52  E-value=9.4e-05  Score=65.29  Aligned_cols=31  Identities=23%  Similarity=0.446  Sum_probs=26.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +||+||||+|+||..+|.++  .| +|+|+|++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC
Confidence            48999999999999988774  58 999999853

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.52  E-value=8.7e-05  Score=66.62  Aligned_cols=34  Identities=26%  Similarity=0.389  Sum_probs=30.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCcEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~   39 (177)
                      .++|+||||+|.||+.+|.++++. +|+|||++..
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa~~-~V~lleK~~~   41 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLAPR-PVVVLSPAPL   41 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhCcC-CEEEEECCCC
Confidence            468999999999999999998733 9999999875

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.49  E-value=0.00013  Score=66.81  Aligned_cols=33  Identities=24%  Similarity=0.212  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ||+||||+|.||+.+|..|++.| +|+|||....
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~   34 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLD   34 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccc
Confidence            79999999999999999999999 9999998743

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.48  E-value=0.00014  Score=70.15  Aligned_cols=36  Identities=25%  Similarity=0.192  Sum_probs=32.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+|++|||+|+||+.+|..|++.+ +|+|+|++...
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~  198 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA  198 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            3589999999999999999999999 99999997653

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.47  E-value=0.00015  Score=69.72  Aligned_cols=35  Identities=23%  Similarity=0.218  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...+++|||||+||..+|..|++.| +|+|+|+...
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~  571 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK  571 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            3479999999999999999999999 9999998653

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG2415|consensus

Probab=97.47  E-value=0.0001  Score=64.46  Aligned_cols=37  Identities=32%  Similarity=0.231  Sum_probs=30.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHh----CC---cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSL----HH---TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~----~g---~VLvLEaG~~~   40 (177)
                      ...+|+||||+|+||+.+|.||-+    +.   +|+|||.+...
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~  117 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEV  117 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeecccc
Confidence            346999999999999999999854    23   99999997643

>PLN02568 polyamine oxidase

Probab=97.47  E-value=0.00016  Score=65.36  Aligned_cols=35  Identities=34%  Similarity=0.408  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhC-----C-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLH-----H-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~-----g-~VLvLEaG~~~   40 (177)
                      ..||||||+|.+|+++|.+|++.     + +|+|||+....
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~   45 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI   45 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence            37999999999999999999964     4 79999997653

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.46  E-value=0.00014  Score=67.22  Aligned_cols=34  Identities=26%  Similarity=0.222  Sum_probs=31.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ...+++|||||++|+++|..|++.| +|.|+|+.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            4589999999999999999999999 999999865

>TIGR00275 flavoprotein, HI0933 family

Probab=97.46  E-value=8.4e-05  Score=64.60  Aligned_cols=31  Identities=32%  Similarity=0.394  Sum_probs=28.7

Q ss_pred             EEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463          10 NIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus        10 IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ||||+|+||+.+|.+|++.| +|+|||+.+..
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~   32 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI   32 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence            69999999999999999999 99999997653

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.45  E-value=0.00013  Score=64.28  Aligned_cols=30  Identities=20%  Similarity=0.371  Sum_probs=26.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .||+||||+|+||..+|.++  .| +|+|+|++
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~   32 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKG   32 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCC
Confidence            59999999999999887654  58 99999985

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG0685|consensus

Probab=97.45  E-value=0.00016  Score=63.84  Aligned_cols=37  Identities=38%  Similarity=0.369  Sum_probs=32.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      +...-+||||+|.||+.+|.||-+.+  .|+|+|+..+.
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI   57 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI   57 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence            34467999999999999999999887  99999998764

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.44  E-value=0.00017  Score=63.63  Aligned_cols=33  Identities=27%  Similarity=0.321  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .|++|||+|.+||.+|..||+.| +|+|+|.-+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            37999999999999999999999 9999997544

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.44  E-value=0.00014  Score=63.97  Aligned_cols=36  Identities=31%  Similarity=0.231  Sum_probs=32.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      .+|||+|||||..|+++|.+|++-.   +|+|||+=...
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~   40 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV   40 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence            3699999999999999999999964   99999997654

>KOG2820|consensus

Probab=97.43  E-value=0.00013  Score=62.09  Aligned_cols=36  Identities=31%  Similarity=0.239  Sum_probs=33.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ....|+||||+|.-|+.+|.+||+.+ ++|+||+=+.
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~   41 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPL   41 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCC
Confidence            45689999999999999999999999 9999999764

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.42  E-value=0.00014  Score=66.64  Aligned_cols=30  Identities=33%  Similarity=0.345  Sum_probs=28.6

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      |||||+|.||+.+|.++++.| +|+|||++.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            689999999999999999999 999999986

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.40  E-value=0.00024  Score=63.03  Aligned_cols=35  Identities=29%  Similarity=0.321  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...+++|||+|+||+.+|..|++.| +|+|+|+.+.
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~  177 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR  177 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            3479999999999999999999999 9999998754

>PLN02529 lysine-specific histone demethylase 1

Probab=97.38  E-value=0.00021  Score=66.83  Aligned_cols=36  Identities=31%  Similarity=0.286  Sum_probs=32.6

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ....|+||||+|++|+.+|..|++.| +|+|||+-..
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~  194 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR  194 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence            34689999999999999999999999 9999999654

>PRK12831 putative oxidoreductase; Provisional

Probab=97.36  E-value=0.00027  Score=62.74  Aligned_cols=34  Identities=26%  Similarity=0.262  Sum_probs=31.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ...|++|||+|+||+.+|.+|++.| +|+|+|+..
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~  173 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH  173 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            4579999999999999999999999 999999854

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.35  E-value=0.00025  Score=61.46  Aligned_cols=33  Identities=39%  Similarity=0.439  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      .++|||+|+||+++|..|++.|  +|.|+|+-+..
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~   36 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF   36 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence            5899999999999999999986  99999997653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.34  E-value=0.00023  Score=63.27  Aligned_cols=33  Identities=39%  Similarity=0.308  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .|+|+|+|.||+.+|.+||+.| .|.|+|++...
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~   35 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRL   35 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCcc
Confidence            4899999999999999999999 99999999764

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.32  E-value=0.00027  Score=66.62  Aligned_cols=36  Identities=33%  Similarity=0.352  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ...++||||+|.+|+.+|.+|++.| +|+|||+-...
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~  273 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP  273 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence            4589999999999999999999999 99999996543

>KOG3855|consensus

Probab=97.32  E-value=0.00022  Score=62.13  Aligned_cols=35  Identities=40%  Similarity=0.458  Sum_probs=31.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-----cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-----TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-----~VLvLEaG~~   39 (177)
                      ..||+||||||+.|..+|+.|..++     ||+|||+|..
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            3699999999999999999999765     8999999943

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.28  E-value=0.00034  Score=62.21  Aligned_cols=33  Identities=36%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +++|||+|.+|+++|.+|++.| +|+|+|+....
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~   34 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFI   34 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            4799999999999999999999 99999996543

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.28  E-value=0.00033  Score=62.03  Aligned_cols=31  Identities=26%  Similarity=0.225  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      |+||||+|++|..+|.+|++.+ +|+|+|++.
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            7999999999999999999999 999999864

>PLN02612 phytoene desaturase

Probab=97.27  E-value=0.00041  Score=63.10  Aligned_cols=34  Identities=35%  Similarity=0.305  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+++|||+|.+|+++|.+|++.| +|+|+|+...
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~  127 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDV  127 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            478999999999999999999999 9999999654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.26  E-value=0.00064  Score=45.60  Aligned_cols=33  Identities=33%  Similarity=0.331  Sum_probs=30.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      ++|||+|..|+-+|..|++.+ +|.|||+.+...
T Consensus         2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            689999999999999999999 999999998754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.26  E-value=0.00025  Score=62.86  Aligned_cols=33  Identities=45%  Similarity=0.547  Sum_probs=26.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC----cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH----TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g----~VLvLEaG~~~   40 (177)
                      ||||||+|+||..+|..|++.+    +|+|||.....
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~   37 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP   37 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence            7999999999999999999965    79999998644

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.24  E-value=0.0004  Score=61.31  Aligned_cols=37  Identities=30%  Similarity=0.292  Sum_probs=30.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      .+||+||+|+|..-|++|.-||..| +||.|++...+.
T Consensus         3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG   40 (438)
T PF00996_consen    3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG   40 (438)
T ss_dssp             SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred             ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence            4599999999999999999999999 999999988654

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG0405|consensus

Probab=97.24  E-value=0.00034  Score=60.05  Aligned_cols=36  Identities=25%  Similarity=0.207  Sum_probs=33.0

Q ss_pred             CCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           2 PTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         2 ~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +....|||.|||+|.+|...|.|-|+.| +|.|+|+.
T Consensus        16 ~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~   52 (478)
T KOG0405|consen   16 ADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELP   52 (478)
T ss_pred             ccccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence            3456799999999999999999999999 99999998

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.23  E-value=0.00045  Score=60.92  Aligned_cols=36  Identities=33%  Similarity=0.378  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ...+++|||+|+||+.+|..|++.+ +|+|+|+....
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            3479999999999999999999999 99999987643

>KOG4716|consensus

Probab=97.22  E-value=0.00035  Score=59.86  Aligned_cols=37  Identities=16%  Similarity=0.121  Sum_probs=33.5

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+++||.||||+|.+|+.+|.+-|..| +|++|+.=..
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~P   53 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKP   53 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeeccc
Confidence            467899999999999999999999999 9999998643

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.22  E-value=0.00048  Score=60.80  Aligned_cols=35  Identities=29%  Similarity=0.283  Sum_probs=31.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...+++|||+|+||+.+|..|++.| +|+|+|+...
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~  167 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK  167 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            3479999999999999999999999 9999998653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG2614|consensus

Probab=97.17  E-value=0.00049  Score=59.90  Aligned_cols=34  Identities=26%  Similarity=0.268  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +-+|||||||.+|++.|.-|++.| +|+|+|+-.+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            358999999999999999999999 9999999433

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.16  E-value=0.0005  Score=58.60  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +||++|||+|.||.+.|.+|.+.| ++.+|-.|..
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs   36 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS   36 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence            589999999999999999999999 9999999974

>KOG1399|consensus

Probab=97.16  E-value=0.00047  Score=61.07  Aligned_cols=35  Identities=29%  Similarity=0.281  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .-+++|||+|+||+++|..|.+.| .|.++|+....
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i   41 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI   41 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc
Confidence            358999999999999999999999 99999998764

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.12  E-value=0.00064  Score=65.72  Aligned_cols=34  Identities=32%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+++|||||+||+.+|..|++.| +|+|+|++..
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~  464 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHV  464 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            479999999999999999999999 9999999754

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.10  E-value=0.00037  Score=60.94  Aligned_cols=29  Identities=34%  Similarity=0.431  Sum_probs=27.4

Q ss_pred             EECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463          11 IVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus        11 VVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      |||+|.+|+.+|.++++.| +|+|||+.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            7999999999999999999 9999999764

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.10  E-value=0.0007  Score=63.44  Aligned_cols=34  Identities=26%  Similarity=0.303  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ...+++|||||+||+.+|..|++.| +|+|+|+..
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~  464 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH  464 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3579999999999999999999999 999999853

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.08  E-value=0.00064  Score=62.72  Aligned_cols=34  Identities=26%  Similarity=0.255  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+++|||+|+||+.+|..|++.| +|+|+|+...
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~  361 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE  361 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            469999999999999999999999 9999998754

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.04  E-value=0.00061  Score=64.02  Aligned_cols=32  Identities=25%  Similarity=0.259  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      +++|||+|+||+++|..|++.  | +|+|||+-..
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            589999999999999999997  7 9999998764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.02  E-value=0.00099  Score=61.56  Aligned_cols=34  Identities=29%  Similarity=0.297  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+++|||+|+||+.+|..|++.| +|+|+|+...
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~  227 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ  227 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            479999999999999999999999 9999998754

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.02  E-value=0.00092  Score=64.26  Aligned_cols=34  Identities=26%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+|+|||||+||+.+|..|++.| +|+|+|+...
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~  340 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD  340 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence            478999999999999999999999 9999998653

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.00  E-value=0.00099  Score=64.21  Aligned_cols=34  Identities=26%  Similarity=0.268  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .-+++|||||+||+.+|..|++.| +|+|+|+...
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~  573 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN  573 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence            468999999999999999999999 9999998653

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.98  E-value=0.0013  Score=55.93  Aligned_cols=35  Identities=29%  Similarity=0.243  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+++|||+|++|+.+|.+|++.+ +|.|+|+.+..
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   53 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP   53 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            468999999999999999999999 99999998654

>PLN03000 amine oxidase

Probab=96.96  E-value=0.0012  Score=62.75  Aligned_cols=36  Identities=33%  Similarity=0.341  Sum_probs=32.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ...++||||+|.+|+.+|.+|++.+ +|+|||+..+.
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri  219 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP  219 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence            4589999999999999999999999 99999997654

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=96.95  E-value=0.00098  Score=59.00  Aligned_cols=33  Identities=39%  Similarity=0.393  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      -++|||||.+|+.+|.+|.+.+   .|.|+|++.+.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~   37 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence            3799999999999999999986   89999998654

>PLN02487 zeta-carotene desaturase

Probab=96.93  E-value=0.0013  Score=60.05  Aligned_cols=34  Identities=32%  Similarity=0.275  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .+++|||+|.+|+.+|.+|++.| +|+|+|+.+..
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~  110 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFI  110 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCC
Confidence            58999999999999999999999 99999997654

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.89  E-value=0.0013  Score=58.63  Aligned_cols=34  Identities=26%  Similarity=0.245  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -+++|||||.||+.+|..||+.| +|.|+|.-+..
T Consensus       125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsi  159 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSI  159 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            46899999999999999999999 99999996643

>PLN02976 amine oxidase

Probab=96.87  E-value=0.0014  Score=65.09  Aligned_cols=36  Identities=31%  Similarity=0.277  Sum_probs=32.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ....|++|||+|++|+.+|.+|++.| +|+|||+...
T Consensus       691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~  727 (1713)
T PLN02976        691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSR  727 (1713)
T ss_pred             CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccC
Confidence            34589999999999999999999999 9999998543

>KOG2665|consensus

Probab=96.82  E-value=0.00093  Score=56.83  Aligned_cols=37  Identities=27%  Similarity=0.233  Sum_probs=32.3

Q ss_pred             CccccEEEECCChHHHHHHHHHHhC-C--cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLH-H--TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG~~~   40 (177)
                      ..+||.||||+|.-|++.|.+|+-. +  +|+|||+-...
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l   85 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL   85 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence            4579999999999999999999975 3  99999997653

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=96.81  E-value=0.0016  Score=59.33  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhC----C-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLH----H-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~----g-~VLvLEaG~~   39 (177)
                      .-+++|||||.||+++|.+|+++    | +|.|||+-..
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~   60 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDV   60 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCC
Confidence            36899999999999999999995    5 9999999654

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.80  E-value=0.0021  Score=57.63  Aligned_cols=35  Identities=31%  Similarity=0.307  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHh--CC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSL--HH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~--~g-~VLvLEaG~~~   40 (177)
                      ...++|||||+||+.+|..|++  .+ +|.|+|+-+..
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p   63 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP   63 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            4679999999999999999997  57 99999998754

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=96.77  E-value=0.0018  Score=58.65  Aligned_cols=33  Identities=27%  Similarity=0.273  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .|+|||||++|+++|+.|.+.| .|+++|+-.+.
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i   36 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI   36 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC
Confidence            4899999999999999999999 99999997654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.75  E-value=0.0022  Score=57.28  Aligned_cols=34  Identities=32%  Similarity=0.358  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+++|||+|++|+.+|..|++.+ +|+|+|+.+.
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~  177 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR  177 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            369999999999999999999999 9999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.70  E-value=0.0023  Score=56.80  Aligned_cols=35  Identities=23%  Similarity=0.234  Sum_probs=31.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...+++|||+|++|+.+|..|++.| +|+|+|+.+.
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~  175 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE  175 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            3478999999999999999999999 9999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG4254|consensus

Probab=96.69  E-value=0.0017  Score=57.39  Aligned_cols=37  Identities=19%  Similarity=0.166  Sum_probs=33.4

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +..||+||||+|-.|+++|+.|++-+ +|+|||+-...
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~   49 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVI   49 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeec
Confidence            45799999999999999999999999 99999997443

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.69  E-value=0.0023  Score=55.34  Aligned_cols=34  Identities=24%  Similarity=0.230  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      .++||||+|+||..+|.+|.+.+   +|+|+++....
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            47999999999999999999976   89999987643

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.64  E-value=0.0023  Score=58.96  Aligned_cols=34  Identities=24%  Similarity=0.194  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+++|||+|++|+.+|..|++.| +|+|+|+.+.
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~  344 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE  344 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence            478999999999999999999999 9999999874

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.55  E-value=0.0029  Score=60.78  Aligned_cols=32  Identities=25%  Similarity=0.137  Sum_probs=29.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ...|+|||+|+||..+|..|++.| +|.|+|+.
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            468999999999999999999999 99999974

>KOG1335|consensus

Probab=96.55  E-value=0.0025  Score=55.38  Aligned_cols=32  Identities=19%  Similarity=0.152  Sum_probs=30.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      ..||+||||+|++|-++|.+-|+.| +...+|.
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEk   70 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEK   70 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEec
Confidence            4699999999999999999999999 9889998

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.54  E-value=0.0031  Score=55.10  Aligned_cols=32  Identities=22%  Similarity=0.245  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~   39 (177)
                      .+||||+|+||+.+|.+|++.+   +|+|+|+.+.
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~   36 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI   36 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence            5899999999999999999864   8999999875

>PRK13984 putative oxidoreductase; Provisional

Probab=96.43  E-value=0.0045  Score=56.55  Aligned_cols=35  Identities=29%  Similarity=0.167  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...+++|||+|+||..+|..|++.| +|.|+|+...
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~  317 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK  317 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            3568999999999999999999999 9999998764

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.38  E-value=0.0045  Score=54.37  Aligned_cols=33  Identities=18%  Similarity=0.212  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      .+||||+|+||..+|.+|.+.+   +|+|+|+....
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~   38 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   38 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            5999999999999999998853   89999999753

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.38  E-value=0.0045  Score=56.15  Aligned_cols=33  Identities=30%  Similarity=0.360  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .-+++|||+|++|+.+|..|++.| +|+|+|+..
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~  170 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP  170 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            368999999999999999999999 999999754

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.34  E-value=0.0035  Score=55.89  Aligned_cols=33  Identities=27%  Similarity=0.320  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCcEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHHTVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~~   40 (177)
                      ||+|||+|.||+.+|..|+++-+|+||-+++..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            999999999999999999987799999988643

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.33  E-value=0.003  Score=56.99  Aligned_cols=35  Identities=20%  Similarity=0.074  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .|||||||+|-||+-+|...|+-| ++|||--..+.
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dt   39 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDT   39 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCc
Confidence            399999999999999999999999 99998776553

>KOG2960|consensus

Probab=96.24  E-value=0.0012  Score=53.48  Aligned_cols=32  Identities=38%  Similarity=0.378  Sum_probs=28.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhC-C--cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLH-H--TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG   37 (177)
                      +.|+||||+|.+|+.+|...+.+ +  +|.+||+-
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S  110 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS  110 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence            57999999999999999999964 4  99999984

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.24  E-value=0.0059  Score=54.20  Aligned_cols=36  Identities=17%  Similarity=0.089  Sum_probs=32.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-C--cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH-H--TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG~~~   40 (177)
                      ..+|||+||||..|++++.-|++- +  +|.|+|+-...
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~   40 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSV   40 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcc
Confidence            469999999999999999999994 4  99999997654

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG2311|consensus

Probab=96.23  E-value=0.004  Score=55.57  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=28.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ..|||||||+|-|||-+|+.-|+-| +.|||-.-
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            3689999999999999999999989 77777654

>PRK09897 hypothetical protein; Provisional

Probab=96.21  E-value=0.0064  Score=55.11  Aligned_cols=32  Identities=28%  Similarity=0.353  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~   38 (177)
                      .+++|||+|++|..+|.+|++..   +|.|+|...
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~   36 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD   36 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence            37999999999999999999854   899999854

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.20  E-value=0.0065  Score=53.12  Aligned_cols=37  Identities=16%  Similarity=0.212  Sum_probs=31.4

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ....++||||+|.||+.+|.+|.... +|+|||.-...
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~   45 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM   45 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence            34579999999999999999998666 99999877653

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.09  E-value=0.011  Score=50.74  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC---cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~   39 (177)
                      .++||||+|+||..+|.+|.+.+   +|.||++...
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            38999999999999999998854   8889987653

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.03  E-value=0.012  Score=52.92  Aligned_cols=34  Identities=24%  Similarity=0.224  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHH-hCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLS-LHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa-~~g-~VLvLEaG~~~   40 (177)
                      .-+.|||||+||+.+|.+|+ +.+ +|.|+|+-+..
T Consensus        40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p   75 (506)
T PTZ00188         40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP   75 (506)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            46999999999999999876 467 99999998765

>KOG0042|consensus

Probab=96.01  E-value=0.0028  Score=57.19  Aligned_cols=37  Identities=30%  Similarity=0.317  Sum_probs=32.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..++|++|||||+.|+=+|.--+-.| +|.|+|+|..-
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~  102 (680)
T KOG0042|consen   65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFA  102 (680)
T ss_pred             CCcccEEEECCCccCcceeehhhcccceeEEEeccccc
Confidence            45699999999999999999888889 99999999753

>KOG3851|consensus

Probab=95.88  E-value=0.0078  Score=51.39  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=31.3

Q ss_pred             CccccEEEECCChHHHHHHHHHHhC-C--cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLH-H--TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG~~   39 (177)
                      +..+.++|||||++|+.+|++++.+ +  +|.+||--.+
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            4568999999999999999999986 4  9999997654

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.85  E-value=0.014  Score=43.41  Aligned_cols=30  Identities=33%  Similarity=0.467  Sum_probs=27.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +.|+|+|.-|+.+|++|++.+ +|.++-+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            579999999999999999998 999998887

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=95.71  E-value=0.013  Score=49.86  Aligned_cols=33  Identities=18%  Similarity=0.323  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhC---C-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH---H-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~---g-~VLvLEaG~~~   40 (177)
                      .+||||+|.||..+|.+|.+.   . +|+|+|+....
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            389999999999999999753   3 99999987653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.61  E-value=0.011  Score=50.50  Aligned_cols=35  Identities=23%  Similarity=0.098  Sum_probs=27.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      .||+|+||.|++++.+|..|.+.+  ++++||+-+..
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            589999999999999999999976  99999987654

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.54  E-value=0.019  Score=46.33  Aligned_cols=32  Identities=34%  Similarity=0.422  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+||||+|.-|..+|..|++.| .|+++|.-+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            4899999999999999999999 9999998764

>KOG2404|consensus

Probab=95.41  E-value=0.016  Score=49.57  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+||||+|.||+.++++|...+ .|+|||.-..
T Consensus        10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s   43 (477)
T KOG2404|consen   10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGS   43 (477)
T ss_pred             CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCC
Confidence            36999999999999999999999 9999998554

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.41  E-value=0.014  Score=50.00  Aligned_cols=34  Identities=29%  Similarity=0.365  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .-+.|||+|.||+-+|.++|+.| .|.|-|--+..
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            35889999999999999999999 99999987643

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=95.40  E-value=0.023  Score=48.21  Aligned_cols=35  Identities=34%  Similarity=0.301  Sum_probs=32.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      -+++|||+|..|+.+|..|++.| +|.|+|+.....
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~  172 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG  172 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc
Confidence            58999999999999999999999 999999998653

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.027  Score=48.84  Aligned_cols=40  Identities=33%  Similarity=0.391  Sum_probs=35.4

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      |-....||+||+|.|.-=|+++++||-++ +||.|++-...
T Consensus         1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~Y   41 (434)
T COG5044           1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYY   41 (434)
T ss_pred             CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCcc
Confidence            44456799999999999999999999999 99999997654

>KOG2844|consensus

Probab=95.28  E-value=0.022  Score=52.67  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=28.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-c-EEEEecC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-T-VLLIEAG   37 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG   37 (177)
                      ....|++|||+|.+||-+|..||+.| + ++++|.-
T Consensus        37 ~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~   72 (856)
T KOG2844|consen   37 PSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERS   72 (856)
T ss_pred             CCcccEEEEcCCchhHHHHHHHHHccccceEEEeee
Confidence            45689999999999999999999999 6 5566653

>KOG1276|consensus

Probab=95.26  E-value=0.026  Score=49.73  Aligned_cols=35  Identities=29%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      .-+++|||+|.+|+.+|..|+..+   .|.|.|++++.
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv   48 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV   48 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence            468999999999999999999987   57789998764

>KOG4405|consensus

Probab=95.24  E-value=0.022  Score=50.03  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=33.6

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +..||+||||.|..=+++|+..++.| +||=|+.-+.+
T Consensus         6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yY   43 (547)
T KOG4405|consen    6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYY   43 (547)
T ss_pred             chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCcccc
Confidence            44699999999999999999999999 99999997654

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=94.87  E-value=0.027  Score=50.12  Aligned_cols=33  Identities=30%  Similarity=0.370  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      -.|-|||||+||+.+|..|+..| .|++.|+=+.
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~  157 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL  157 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence            57899999999999999999999 9999888543

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=94.73  E-value=0.036  Score=41.82  Aligned_cols=29  Identities=21%  Similarity=0.462  Sum_probs=25.3

Q ss_pred             EEECCChHHHHHHHHHHhC-----C-cEEEEecCC
Q psy2463          10 NIVGAGTAGCVLANRLSLH-----H-TVLLIEAGD   38 (177)
Q Consensus        10 IVVG~G~aG~v~A~rLa~~-----g-~VLvLEaG~   38 (177)
                      .|||+|++|..++.+|.+.     . +|.|+|..+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~   35 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP   35 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            4899999999999999986     3 899999843

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.72  E-value=0.06  Score=45.20  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=31.2

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      |++.. -.+.|||+|.-|+.+|.+|+++| .|.++-++.
T Consensus         1 ~~~~~-m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          1 MDSET-PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CCCcC-cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            44433 35999999999999999999999 999998875

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=94.68  E-value=0.049  Score=47.04  Aligned_cols=33  Identities=36%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|||++...
T Consensus       146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  179 (396)
T PRK09754        146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATV  179 (396)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            5899999999999999999999 99999998754

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=94.66  E-value=0.04  Score=48.85  Aligned_cols=37  Identities=30%  Similarity=0.227  Sum_probs=32.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC----C--cEEEEecCCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH----H--TVLLIEAGDFPS   41 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~----g--~VLvLEaG~~~~   41 (177)
                      ..+|+|+||+|++|.-.|.+||.+    .  +|++||.|.+..
T Consensus        17 ~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~   59 (486)
T COG2509          17 AALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIE   59 (486)
T ss_pred             hccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchh
Confidence            469999999999999999999974    3  899999998764

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.59  E-value=0.052  Score=41.06  Aligned_cols=29  Identities=31%  Similarity=0.342  Sum_probs=26.4

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +.|+|+|..|..+|.-|++++ +|.|..+-
T Consensus         2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~   31 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADNGHEVTLWGRD   31 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred             EEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence            679999999999999999999 99997664

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.54  E-value=0.054  Score=45.43  Aligned_cols=31  Identities=35%  Similarity=0.397  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||+|+-|+.+|.+|++.| .|.++.++.
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            5899999999999999999999 999999974

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=94.50  E-value=0.058  Score=46.19  Aligned_cols=34  Identities=26%  Similarity=0.260  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|.++..
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~  176 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL  176 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence            36899999999999999999999 99999998753

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=94.41  E-value=0.06  Score=47.64  Aligned_cols=34  Identities=32%  Similarity=0.289  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|.+|+-+|..|++.+ +|.|||+++..
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i  215 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI  215 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence            36899999999999999999999 99999998753

>KOG2853|consensus

Probab=94.32  E-value=0.04  Score=47.58  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC----C-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH----H-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~----g-~VLvLEaG~~~   40 (177)
                      ...|++|||+|-.|+.+|.-|-+.    + +|+|+|+-..+
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            368999999999999999877652    4 99999997644

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.27  E-value=0.027  Score=48.77  Aligned_cols=33  Identities=27%  Similarity=0.174  Sum_probs=28.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC--cEEEEec
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEA   36 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEa   36 (177)
                      +--||++|||+|+||..+|-.-|++|  .=|+-|+
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer  243 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER  243 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh
Confidence            34599999999999999999999999  4466666

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.21  E-value=0.072  Score=46.59  Aligned_cols=33  Identities=21%  Similarity=0.257  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|++...
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  192 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI  192 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            5999999999999999999999 99999998754

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=94.16  E-value=0.06  Score=46.53  Aligned_cols=38  Identities=29%  Similarity=0.253  Sum_probs=33.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCcEEEEecCCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFPS   41 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~~~   41 (177)
                      ..+-++-|||+|.+|+.+|.-|+...+|.|.||+....
T Consensus         6 ~~r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlG   43 (447)
T COG2907           6 HPRRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLG   43 (447)
T ss_pred             CCCcceEEEcccchhhhhHHhhhcccceEEEecccccc
Confidence            34578999999999999999999877999999987643

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=94.09  E-value=0.078  Score=46.55  Aligned_cols=34  Identities=26%  Similarity=0.224  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -+++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  205 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI  205 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence            47999999999999999999999 99999998753

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.99  E-value=0.084  Score=41.01  Aligned_cols=31  Identities=26%  Similarity=0.293  Sum_probs=26.2

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +.|||+|..|.-+|..++..| +|.|++.-+.
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            679999999999999999999 9999988543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=93.99  E-value=0.086  Score=46.51  Aligned_cols=33  Identities=30%  Similarity=0.346  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l  205 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL  205 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            6999999999999999999999 99999998754

>KOG2755|consensus

Probab=93.94  E-value=0.047  Score=45.50  Aligned_cols=31  Identities=39%  Similarity=0.537  Sum_probs=27.6

Q ss_pred             EEEECCChHHHHHHHHHHhC-C--cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLH-H--TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG~~   39 (177)
                      +||||||.||...|..||.. +  .||||-+-+-
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~   35 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF   35 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence            79999999999999999985 3  8999988763

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.80  E-value=0.096  Score=46.50  Aligned_cols=33  Identities=18%  Similarity=0.108  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.| +|.|||+++..
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i  209 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV  209 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence            6899999999999999999999 99999998754

>TIGR02053 MerA mercuric reductase

Probab=93.73  E-value=0.1  Score=46.03  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  201 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL  201 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence            46899999999999999999999 99999998653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07846 mycothione reductase; Reviewed

Probab=93.71  E-value=0.1  Score=46.11  Aligned_cols=34  Identities=21%  Similarity=0.156  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.| +|.|||++...
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l  201 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL  201 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            36899999999999999999999 99999998754

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.66  E-value=0.13  Score=36.29  Aligned_cols=31  Identities=26%  Similarity=0.326  Sum_probs=27.6

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +||||.|..|..+|..|.+.+ +|+++|.-+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            699999999999999999987 9999998764

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=93.65  E-value=0.11  Score=45.94  Aligned_cols=33  Identities=27%  Similarity=0.119  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|||+++..
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i  201 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV  201 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            6899999999999999999999 99999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.61  E-value=0.1  Score=43.14  Aligned_cols=28  Identities=29%  Similarity=0.398  Sum_probs=26.6

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      +.|||+|.-|+.+|..|+++| +|.++.+
T Consensus         3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            789999999999999999999 9999887

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.58  E-value=0.11  Score=42.91  Aligned_cols=28  Identities=29%  Similarity=0.431  Sum_probs=26.6

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      +.|||+|.-|+.+|.+|++.| +|.++.+
T Consensus         3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r   31 (304)
T PRK06522          3 IAILGAGAIGGLFGAALAQAGHDVTLVAR   31 (304)
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence            789999999999999999999 9999887

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=93.42  E-value=0.12  Score=44.93  Aligned_cols=34  Identities=26%  Similarity=0.278  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.+++.+...
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  172 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI  172 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence            36899999999999999999999 99999998754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.36  E-value=0.1  Score=46.52  Aligned_cols=33  Identities=21%  Similarity=0.240  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC----cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH----TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g----~VLvLEaG~~   39 (177)
                      ++++|||+|++|..+|..|.+..    +|-|+|.-++
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~   38 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN   38 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence            68999999999999999999865    5999997544

>KOG1439|consensus

Probab=93.29  E-value=0.045  Score=47.82  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .||+||+|.|.-=|+++.+||-+| +||.+++-...
T Consensus         4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yY   39 (440)
T KOG1439|consen    4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYY   39 (440)
T ss_pred             ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCC
Confidence            499999999999999999999999 99999997654

>PRK06370 mercuric reductase; Validated

Probab=93.28  E-value=0.13  Score=45.34  Aligned_cols=34  Identities=26%  Similarity=0.269  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~  206 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL  206 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence            36899999999999999999999 99999998754

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=93.27  E-value=0.13  Score=45.13  Aligned_cols=33  Identities=33%  Similarity=0.361  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|||+++..
T Consensus       177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  210 (461)
T PRK05249        177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL  210 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            5899999999999999999999 99999998754

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.27  E-value=0.13  Score=45.18  Aligned_cols=33  Identities=21%  Similarity=0.186  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  207 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI  207 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence            6899999999999999999999 99999998764

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=93.22  E-value=0.081  Score=46.45  Aligned_cols=36  Identities=39%  Similarity=0.457  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhC------------C--cEEEEecCCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLH------------H--TVLLIEAGDFPS   41 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~------------g--~VLvLEaG~~~~   41 (177)
                      .-+++|||||+.|.-+|.+|++.            .  +|.|+|+|+..-
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL  204 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL  204 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc
Confidence            35799999999999999999862            1  699999999753

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=93.18  E-value=0.13  Score=45.14  Aligned_cols=33  Identities=24%  Similarity=0.156  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l  183 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKI  183 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            6899999999999999999999 99999998753

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.17  E-value=0.14  Score=45.28  Aligned_cols=33  Identities=30%  Similarity=0.219  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~  207 (466)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA  207 (466)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            6899999999999999999999 99999988753

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.08  E-value=0.15  Score=45.17  Aligned_cols=34  Identities=24%  Similarity=0.172  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i  209 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI  209 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            35899999999999999999999 99999998754

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=92.92  E-value=0.16  Score=44.57  Aligned_cols=33  Identities=30%  Similarity=0.364  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  204 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI  204 (460)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            6899999999999999999999 99999998754

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=92.90  E-value=0.18  Score=48.26  Aligned_cols=33  Identities=15%  Similarity=0.136  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhC----C-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH----H-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~----g-~VLvLEaG~~~   40 (177)
                      .+||||+|+||..+|.+|.+.    + +|.|+++.+..
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            799999999999999999753    3 89999998764

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=92.77  E-value=0.13  Score=48.62  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=27.7

Q ss_pred             EEEECCChHHHHHHHHHHhC---C-cEEEEecCCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLH---H-TVLLIEAGDFP   40 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~---g-~VLvLEaG~~~   40 (177)
                      +||||+|+||..+|.+|.+.   + +|.|+|+.+..
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence            58999999999999998763   3 89999998764

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=92.77  E-value=0.16  Score=37.16  Aligned_cols=34  Identities=24%  Similarity=0.329  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      .-++|||+|.-|+.+|..|+..|  ++.|++-..-.
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~   38 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE   38 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence            45899999999999999999999  89999877643

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=92.69  E-value=0.15  Score=44.75  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      --+||||||.||.-+|.+|+..  + +|.||++-...
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h   40 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH   40 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence            3589999999999999999996  3 89999988754

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=92.57  E-value=0.17  Score=42.42  Aligned_cols=31  Identities=29%  Similarity=0.262  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||+|.-|+.+|..|+++| +|.+.+.-+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            4889999999999999999999 999998764

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=92.54  E-value=0.19  Score=43.79  Aligned_cols=33  Identities=24%  Similarity=0.181  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++|++..
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~  183 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR  183 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence            36899999999999999999999 9999998875

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=92.51  E-value=0.2  Score=44.09  Aligned_cols=33  Identities=24%  Similarity=0.173  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|.++..
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~  201 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI  201 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence            5899999999999999999999 99999998754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.49  E-value=0.19  Score=41.61  Aligned_cols=31  Identities=26%  Similarity=0.427  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -+.|||+|.-|..+|..|+++| +|.+++.-.
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            4889999999999999999999 999998653

>TIGR03452 mycothione_red mycothione reductase

Probab=92.40  E-value=0.21  Score=44.11  Aligned_cols=34  Identities=21%  Similarity=0.167  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|||.++..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l  204 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL  204 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            36899999999999999999999 99999998753

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=92.34  E-value=0.19  Score=45.12  Aligned_cols=33  Identities=24%  Similarity=0.206  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|.++..
T Consensus       354 ~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l  387 (515)
T TIGR03140       354 DVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL  387 (515)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence            7999999999999999999988 99999987654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=92.28  E-value=0.21  Score=40.56  Aligned_cols=33  Identities=24%  Similarity=0.150  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++++++..
T Consensus       143 ~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~  176 (300)
T TIGR01292       143 EVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF  176 (300)
T ss_pred             EEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence            6899999999999999999988 99999998753

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=92.28  E-value=0.22  Score=44.22  Aligned_cols=33  Identities=24%  Similarity=0.188  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  218 (475)
T PRK06327        185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF  218 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence            6899999999999999999999 99999998754

>PRK06116 glutathione reductase; Validated

Probab=92.23  E-value=0.22  Score=43.68  Aligned_cols=34  Identities=29%  Similarity=0.303  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++++++..
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP  202 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            36899999999999999999999 99999998753

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=92.15  E-value=0.19  Score=39.22  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=24.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +.|||.|.-|+++|..||+.| +|+.++..+.
T Consensus         3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            689999999999999999999 9999988764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=92.15  E-value=0.22  Score=43.54  Aligned_cols=33  Identities=30%  Similarity=0.387  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHh--------------CC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSL--------------HH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~--------------~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++              .+ +|.|+|+++..
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l  222 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV  222 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence            68999999999999999986              35 89999998754

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.09  E-value=0.23  Score=41.14  Aligned_cols=30  Identities=23%  Similarity=0.336  Sum_probs=27.4

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +.|||+|.-|..+|..|+++| +|.+.+.-+
T Consensus         4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            789999999999999999999 999987653

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.07  E-value=0.22  Score=41.84  Aligned_cols=29  Identities=34%  Similarity=0.406  Sum_probs=27.0

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +.|||+|.-|+.+|..|++++ .|.++.+-
T Consensus         3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~   32 (326)
T PRK14620          3 ISILGAGSFGTAIAIALSSKKISVNLWGRN   32 (326)
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            789999999999999999999 99998874

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=92.05  E-value=0.31  Score=43.46  Aligned_cols=34  Identities=29%  Similarity=0.295  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      -.+|||+|.-|+-.|.-++.-| +|.|||+++..-
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL  209 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL  209 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            3899999999999999999999 999999998754

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=91.98  E-value=0.26  Score=36.32  Aligned_cols=32  Identities=25%  Similarity=0.310  Sum_probs=28.5

Q ss_pred             EEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      ++|||.|.-|+.+|..|+..|  ++.+++...-.
T Consensus         2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~   35 (143)
T cd01483           2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE   35 (143)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence            789999999999999999999  89998877543

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=91.96  E-value=0.25  Score=43.73  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~  212 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRV  212 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcC
Confidence            6899999999999999999999 99999998754

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=91.89  E-value=0.22  Score=41.99  Aligned_cols=31  Identities=32%  Similarity=0.399  Sum_probs=28.4

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +.|+|+|+-|+..|.+|++.| .|+++=+...
T Consensus         3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           3 ILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             EEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            689999999999999999999 8988888774

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=91.87  E-value=0.22  Score=45.20  Aligned_cols=32  Identities=22%  Similarity=0.046  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|||+|..|+-+|..|++.+ +|.++++++.
T Consensus       145 ~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             EEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            6899999999999999999988 9999999875

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=91.87  E-value=0.18  Score=42.24  Aligned_cols=25  Identities=32%  Similarity=0.250  Sum_probs=22.8

Q ss_pred             hHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463          16 TAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus        16 ~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .||+++|.+|++.| +|+|||+..+.
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~   26 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRV   26 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSS
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCC
Confidence            48999999999999 99999998764

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=91.73  E-value=0.24  Score=42.35  Aligned_cols=33  Identities=24%  Similarity=0.208  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ..-++|||.|.-|+.+|..|+..|  ++.|++...
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            356999999999999999999999  899898875

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=91.70  E-value=0.29  Score=37.25  Aligned_cols=28  Identities=21%  Similarity=0.231  Sum_probs=25.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEE
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLI   34 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvL   34 (177)
                      -.++|||+|..|.-.|..|.+.+ +|.|+
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VI   42 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVV   42 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            35899999999999999999999 99888

>PRK10262 thioredoxin reductase; Provisional

Probab=91.70  E-value=0.27  Score=41.05  Aligned_cols=33  Identities=27%  Similarity=0.145  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++++....
T Consensus       148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            6899999999999999999998 99999998643

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=91.69  E-value=0.25  Score=44.33  Aligned_cols=33  Identities=21%  Similarity=0.181  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +++|||+|..|+-+|..|+..+ +|.|++.++..
T Consensus       353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            7999999999999999999988 99999998754

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=91.68  E-value=0.26  Score=45.89  Aligned_cols=33  Identities=21%  Similarity=0.188  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|||+++..
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l  347 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL  347 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence            6899999999999999999999 99999998754

>PLN02507 glutathione reductase

Probab=91.61  E-value=0.28  Score=43.97  Aligned_cols=33  Identities=21%  Similarity=0.190  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~  238 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP  238 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence            6899999999999999999999 99999998753

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=91.59  E-value=0.27  Score=41.41  Aligned_cols=31  Identities=35%  Similarity=0.557  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||+|.-|+.+|.+|+++| +|.++.+..
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            3899999999999999999999 999998854

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=91.57  E-value=0.3  Score=42.74  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  193 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLF  193 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            6899999999999999999999 99999998754

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=91.49  E-value=0.35  Score=40.10  Aligned_cols=30  Identities=27%  Similarity=0.403  Sum_probs=27.3

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +.|||+|.-|+.+|..|+..| +|.+.+.-.
T Consensus         7 V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          7 VGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             EEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            889999999999999999999 999987643

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=91.44  E-value=0.26  Score=46.70  Aligned_cols=33  Identities=21%  Similarity=0.134  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.| +|.|+|.++..
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l  175 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL  175 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence            5899999999999999999999 99999988753

>PRK13748 putative mercuric reductase; Provisional

Probab=91.40  E-value=0.29  Score=44.19  Aligned_cols=31  Identities=13%  Similarity=0.194  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .++|||+|..|+-+|..|++.+ +|.|||+..
T Consensus       272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  303 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFARLGSKVTILARST  303 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence            6899999999999999999999 999999853

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.17  E-value=0.32  Score=40.52  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      -+-|||+|.-|+-+|..|+.+| .|.+++.-+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            4789999999999999999999 9999987654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.17  E-value=0.33  Score=40.23  Aligned_cols=30  Identities=30%  Similarity=0.408  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||+|.-|..+|..|+.+| .|.+.+.-
T Consensus         6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~   36 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVS   36 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3789999999999999999999 99998864

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=91.17  E-value=0.34  Score=38.40  Aligned_cols=30  Identities=23%  Similarity=0.179  Sum_probs=27.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      --++|||+|..|...|..|.+.| +|.|++.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            36899999999999999999999 9999964

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.14  E-value=0.33  Score=43.00  Aligned_cols=31  Identities=26%  Similarity=0.378  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .++|||+|.+|..+|.-|++.| +|.++|...
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5899999999999999999999 999999654

>PRK14694 putative mercuric reductase; Provisional

Probab=91.09  E-value=0.34  Score=42.87  Aligned_cols=31  Identities=16%  Similarity=0.162  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .++|||+|..|+-+|..|++.+ +|.|++.+.
T Consensus       180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~  211 (468)
T PRK14694        180 RLLVIGASVVALELAQAFARLGSRVTVLARSR  211 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            6899999999999999999999 999999753

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=91.08  E-value=0.37  Score=37.19  Aligned_cols=31  Identities=26%  Similarity=0.297  Sum_probs=28.4

Q ss_pred             EEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ++|||.|.-|+.+|..|+..|  ++.|++...-
T Consensus         2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v   34 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV   34 (174)
T ss_pred             EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence            789999999999999999999  7999998753

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>KOG1800|consensus

Probab=91.06  E-value=0.36  Score=42.25  Aligned_cols=36  Identities=31%  Similarity=0.285  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-C--cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH-H--TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEaG~~~   40 (177)
                      .+.-++|||||+||.-+|.+|-++ .  +|-+.|.-+.+
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            346899999999999999999884 3  99999998754

>PLN02546 glutathione reductase

Probab=91.04  E-value=0.33  Score=44.28  Aligned_cols=33  Identities=18%  Similarity=0.057  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|++...
T Consensus       254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i  287 (558)
T PLN02546        254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV  287 (558)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence            6899999999999999999999 99999998753

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.97  E-value=0.33  Score=41.54  Aligned_cols=33  Identities=24%  Similarity=0.239  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ..-++|||+|.-|+.+|..|+..|  ++.|++...
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            467999999999999999999999  999999864

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.97  E-value=0.34  Score=40.83  Aligned_cols=31  Identities=26%  Similarity=0.212  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||+|.-|..+|.+|+++| .|.+..+-.
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4889999999999999999999 999998853

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.95  E-value=0.35  Score=40.09  Aligned_cols=31  Identities=19%  Similarity=0.404  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -+.|||+|.-|+.+|..|+.+| +|.+.+.-+
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            3789999999999999999999 999988643

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.94  E-value=0.32  Score=42.56  Aligned_cols=32  Identities=31%  Similarity=0.399  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -.++|||+|..|..+|.+|++.| +|.+.+...
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            45899999999999999999999 999999864

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.94  E-value=0.35  Score=41.20  Aligned_cols=30  Identities=20%  Similarity=0.267  Sum_probs=27.5

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +-|||+|+-|+-+|..++..| +|.+.+.-+
T Consensus        10 VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066         10 FAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            789999999999999999999 999998653

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=90.93  E-value=0.35  Score=38.28  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ...+.|||+|.-|+.+|..|+..|  ++.|++...
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            457999999999999999999999  788888763

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.80  E-value=0.26  Score=40.96  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ..-++|||.|.-|+.+|.-|+..|  ++.|+|.-..
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            467999999999999999999999  9999997654

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=90.78  E-value=0.33  Score=42.98  Aligned_cols=33  Identities=21%  Similarity=0.197  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +|+|||+|.+|.-+|..|++.+ +|-++=+.+..
T Consensus       177 rV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         177 RVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             eEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence            6899999999999999999999 99999888754

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=90.67  E-value=0.25  Score=34.69  Aligned_cols=31  Identities=23%  Similarity=0.168  Sum_probs=26.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -.++|||+|..|..-+..|.+.| +|.|+-.-
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            46899999999999999999999 88887554

>PRK14727 putative mercuric reductase; Provisional

Probab=90.62  E-value=0.38  Score=42.75  Aligned_cols=30  Identities=10%  Similarity=0.194  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+++.
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            6899999999999999999999 99999975

>PTZ00058 glutathione reductase; Provisional

Probab=90.61  E-value=0.38  Score=43.99  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.| +|.|+|++...
T Consensus       239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i  272 (561)
T PTZ00058        239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNRL  272 (561)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence            5899999999999999999999 99999998753

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=90.51  E-value=0.53  Score=34.65  Aligned_cols=32  Identities=19%  Similarity=0.218  Sum_probs=27.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      .--++|||+|-+|..++..|++.|  +|.|+-+-
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            357899999999999999999999  58887653

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=90.41  E-value=0.38  Score=46.06  Aligned_cols=32  Identities=25%  Similarity=0.240  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|||+|..|+-+|..|++.| +|.|+|.++.
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~  179 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM  179 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence            4799999999999999999999 9999999875

>PRK04148 hypothetical protein; Provisional

Probab=90.34  E-value=0.3  Score=36.48  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=27.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      -.+++||.| .|..+|..|++.| .|+.++.-+.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            348999999 8888899999999 9999997664

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.32  E-value=0.42  Score=39.35  Aligned_cols=29  Identities=24%  Similarity=0.424  Sum_probs=26.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      .+.|||+|.-|+.+|..|+..| .|++++.
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~   34 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDI   34 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeC
Confidence            4889999999999999999999 9999873

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=90.22  E-value=0.44  Score=37.61  Aligned_cols=35  Identities=26%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ...-++|||.|.-|+.+|..|+..|  ++.+++...-
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v   56 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV   56 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence            3467999999999999999999999  8999887653

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>KOG0404|consensus

Probab=90.21  E-value=0.34  Score=39.73  Aligned_cols=32  Identities=25%  Similarity=0.158  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -.++|||+|+|+-++|..++++- +-||.|-+-
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~   41 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM   41 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeee
Confidence            46899999999999999999998 999999753

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=90.15  E-value=0.47  Score=40.31  Aligned_cols=32  Identities=25%  Similarity=0.139  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-c-EEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-T-VLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~~   39 (177)
                      .++|||+|..|+-+|..|++.+ + |.|+++...
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            5899999999999999999888 5 999998653

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.14  E-value=0.46  Score=39.63  Aligned_cols=29  Identities=34%  Similarity=0.468  Sum_probs=26.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      .+.|||+|.-|+.+|..|++.| +|.+++.
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~   35 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARKGLQVVLIDV   35 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence            4889999999999999999999 9999985

>PRK08328 hypothetical protein; Provisional

Probab=90.08  E-value=0.46  Score=38.35  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=28.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ..-++|||.|..|+.+|..|+..|  ++.+++...
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            457999999999999999999999  888886554

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=89.99  E-value=0.47  Score=38.08  Aligned_cols=33  Identities=24%  Similarity=0.223  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ..-++|||.|.-|+.+|..|+..|  ++.|++...
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            467999999999999999999999  888887765

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>KOG0399|consensus

Probab=89.81  E-value=0.4  Score=47.35  Aligned_cols=34  Identities=32%  Similarity=0.385  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+-|||+|+||+.+|..|-+.| .|.|-|+-.+.
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred             cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence            56889999999999999999999 99999997654

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=89.79  E-value=0.51  Score=39.26  Aligned_cols=31  Identities=29%  Similarity=0.291  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||+|.-|+.+|.+|++++ .|.++.+.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3899999999999999999999 998888753

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=89.76  E-value=0.53  Score=38.28  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      ...++|||.|.-|+.+|..|+..|  ++.+++...-.
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve   60 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS   60 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence            467999999999999999999999  88888877543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=89.72  E-value=0.45  Score=42.62  Aligned_cols=33  Identities=18%  Similarity=0.108  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHH---hCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLS---LHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa---~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|+   +.+ +|.|||+++..
T Consensus       189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i  225 (486)
T TIGR01423       189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI  225 (486)
T ss_pred             eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence            5899999999999997554   347 99999998764

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=89.63  E-value=0.49  Score=41.36  Aligned_cols=31  Identities=26%  Similarity=0.447  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      +++|||+|.-|.++|..||+++  +|++..+-.
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            6899999999999999999998  899987763

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=89.52  E-value=0.57  Score=37.36  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=29.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ..-++|||+|.-|+.+|..|+..|  ++.|++...
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            467999999999999999999999  799998874

>PTZ00052 thioredoxin reductase; Provisional

Probab=89.47  E-value=0.51  Score=42.30  Aligned_cols=30  Identities=27%  Similarity=0.115  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .++|||+|..|+-+|..|++.+ +|.|++..
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            6899999999999999999999 99999874

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=89.27  E-value=0.59  Score=38.10  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ...++|||.|.-|+.+|..|+..|  ++.|++...-
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v   67 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV   67 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            468999999999999999999999  8888887753

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=89.25  E-value=0.61  Score=36.81  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -++|+|.|.-|..+|.+|.+.| +|++.+.-
T Consensus        30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            5899999999999999999999 99988754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=89.18  E-value=0.57  Score=39.68  Aligned_cols=31  Identities=29%  Similarity=0.529  Sum_probs=28.8

Q ss_pred             EEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ++|||+|.-|+.+|..|+..|  ++.+++.+..
T Consensus         2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~V   34 (307)
T cd01486           2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKV   34 (307)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence            789999999999999999999  9999998864

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=89.18  E-value=0.54  Score=42.00  Aligned_cols=30  Identities=20%  Similarity=0.063  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+++.
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            5899999999999999999999 99999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=88.99  E-value=0.68  Score=36.48  Aligned_cols=34  Identities=15%  Similarity=0.247  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ..-++|||.|.-|+.+|..|+..|  ++.+++...-
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v   56 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV   56 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence            456899999999999999999999  8999987754

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=88.88  E-value=0.65  Score=41.01  Aligned_cols=32  Identities=13%  Similarity=-0.006  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|||+|..|+-+|..|++.| +|.|+++...
T Consensus       274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            6999999999999999999999 9999998864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=88.87  E-value=0.7  Score=36.40  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ..-++|||.|.-|+.+|..|+..|  ++.+++-..-
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v   54 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV   54 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence            467999999999999999999999  8999987653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=88.85  E-value=0.68  Score=42.04  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +-.+||+|.|.-|..+|.+|.+.+ +|+++|.-++
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            356899999999999999999999 9999997654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=88.77  E-value=0.68  Score=36.77  Aligned_cols=29  Identities=21%  Similarity=0.147  Sum_probs=26.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      -++|||+|..|.--|..|.+.| +|.|+.-
T Consensus        11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp   40 (205)
T TIGR01470        11 AVLVVGGGDVALRKARLLLKAGAQLRVIAE   40 (205)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence            5899999999999999999999 9988854

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.75  E-value=0.55  Score=41.28  Aligned_cols=31  Identities=23%  Similarity=0.403  Sum_probs=28.0

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +.|||.|.+|..+|.-|.+.| +|.+.|....
T Consensus         3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            789999999999999999999 9999997653

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=88.66  E-value=0.51  Score=42.03  Aligned_cols=32  Identities=9%  Similarity=0.147  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|||+|..|+-+|..|++.. +|.++.++..
T Consensus       206 ~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~  238 (461)
T PLN02172        206 VVVVIGNFASGADISRDIAKVAKEVHIASRASE  238 (461)
T ss_pred             EEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc
Confidence            6999999999999999999988 9999998764

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=88.60  E-value=0.71  Score=37.53  Aligned_cols=31  Identities=32%  Similarity=0.555  Sum_probs=28.1

Q ss_pred             EEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ++|||+|.-|+.++..|+..|  ++.|++...-
T Consensus         2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V   34 (234)
T cd01484           2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI   34 (234)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence            789999999999999999999  8999887653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=88.60  E-value=0.51  Score=42.44  Aligned_cols=32  Identities=28%  Similarity=0.269  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-----cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-----TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-----~VLvLEaG~   38 (177)
                      -++-|||||.|++++|.-|.+++     +|-+||.-.
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~   39 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELD   39 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCC
Confidence            46889999999999999999865     899999754

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=88.54  E-value=0.61  Score=43.33  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ..-++|||+|.-||.+|..|+..|  ++.+++.+.-
T Consensus       338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~V  373 (664)
T TIGR01381       338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKV  373 (664)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEE
Confidence            467899999999999999999999  8999999864

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=88.41  E-value=0.72  Score=40.60  Aligned_cols=38  Identities=24%  Similarity=0.074  Sum_probs=33.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFPS   41 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~~   41 (177)
                      ...+|+|.||-|++-+.+|+-|.+.+  ++|+||+-+...
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~   42 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS   42 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC
Confidence            44699999999999999999999976  899999988654

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=88.14  E-value=0.76  Score=40.34  Aligned_cols=31  Identities=16%  Similarity=0.290  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -+.|||.|..|+.+|..|++.| +|.+++.-+
T Consensus         5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~   36 (415)
T PRK11064          5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ   36 (415)
T ss_pred             EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence            3889999999999999999999 999988654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=88.00  E-value=0.79  Score=36.91  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=28.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-c---EEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-T---VLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~---VLvLEaG~   38 (177)
                      -.++|+|+|.+|..+|..|.+.| +   |.|+++-+
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            46899999999999999999988 6   88888763

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.76  E-value=0.95  Score=38.58  Aligned_cols=30  Identities=17%  Similarity=0.165  Sum_probs=24.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEE
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLL   33 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLv   33 (177)
                      ++.-.+.|||+|.-|+++|..|++++ .+++
T Consensus         5 ~~~mkI~IiGaGa~G~alA~~La~~g~v~l~   35 (341)
T PRK12439          5 KREPKVVVLGGGSWGTTVASICARRGPTLQW   35 (341)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            44567999999999999999999998 4433

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.64  E-value=0.82  Score=38.26  Aligned_cols=31  Identities=29%  Similarity=0.272  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||+|.-|..+|.+|+++| .|.+..+-.
T Consensus         6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4789999999999999999999 998887654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.56  E-value=0.84  Score=39.86  Aligned_cols=31  Identities=39%  Similarity=0.502  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .++|||+|.-|..+|.+|.+.+ .|.++|+-+
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            4899999999999999999999 999998743

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=87.45  E-value=0.87  Score=39.38  Aligned_cols=33  Identities=21%  Similarity=0.187  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ..-++|||.|..|+.+|..|+..|  ++.|++...
T Consensus       135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~  169 (376)
T PRK08762        135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV  169 (376)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            457999999999999999999999  899998774

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=87.42  E-value=1  Score=34.78  Aligned_cols=32  Identities=25%  Similarity=0.161  Sum_probs=27.9

Q ss_pred             cccEEEECCCh-HHHHHHHHHHhCC-cEEEEecC
Q psy2463           6 LSLENIVGAGT-AGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~-aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ...++|||+|- .|..+|..|.+.+ +|.++.+-
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            46899999996 6999999999999 99888864

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=87.35  E-value=0.8  Score=39.95  Aligned_cols=30  Identities=23%  Similarity=0.246  Sum_probs=27.6

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +.|||.|..|+.+|..|++.| +|.+.+.-.
T Consensus         3 I~vIGlG~~G~~lA~~La~~G~~V~~~d~~~   33 (411)
T TIGR03026         3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQ   33 (411)
T ss_pred             EEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence            789999999999999999999 999998754

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=87.27  E-value=0.85  Score=41.16  Aligned_cols=30  Identities=27%  Similarity=0.369  Sum_probs=27.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -+-|||+|+-|.-+|..|+.+| .|.|.|.-
T Consensus         7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~   37 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIR   37 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            3789999999999999999999 99988754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.09  E-value=0.93  Score=39.56  Aligned_cols=33  Identities=36%  Similarity=0.355  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      -.+||||.|.-|..+|..|.+.+ .|+++|.-+.
T Consensus       232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~  265 (453)
T PRK09496        232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE  265 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            35899999999999999999999 9999987653

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=86.94  E-value=1.1  Score=35.68  Aligned_cols=30  Identities=23%  Similarity=0.278  Sum_probs=26.5

Q ss_pred             EEEEC-CChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVG-AGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG-~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +.||| +|.-|..+|.+|++++ +|.+..+..
T Consensus         3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            78997 7999999999999999 998887654

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK08223 hypothetical protein; Validated

Probab=86.93  E-value=0.95  Score=38.01  Aligned_cols=34  Identities=21%  Similarity=0.163  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ..-++|||.|--|+.+|..||..|  ++.|++...-
T Consensus        27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V   62 (287)
T PRK08223         27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF   62 (287)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            467999999999999999999999  8999887754

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=86.80  E-value=0.96  Score=38.05  Aligned_cols=31  Identities=29%  Similarity=0.560  Sum_probs=28.1

Q ss_pred             EEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ++|||+|.-|+-++..|+..|  ++.|++-..-
T Consensus         2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~V   34 (291)
T cd01488           2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDTI   34 (291)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence            789999999999999999999  8999887753

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=86.74  E-value=0.98  Score=37.63  Aligned_cols=31  Identities=23%  Similarity=0.292  Sum_probs=27.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      -.++|||+|-+|..+|..|++.|  +|.|+.+-
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~  160 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD  160 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35899999999999999999988  78888764

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=86.66  E-value=1.3  Score=37.59  Aligned_cols=38  Identities=21%  Similarity=0.280  Sum_probs=30.8

Q ss_pred             CCCccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           2 PTEYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         2 ~~~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      .+-+..-+.|||+|..|..+|..|+..+  .|.|++.-+.
T Consensus         2 ~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          2 TMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            3334456899999999999999999888  8999987544

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=86.50  E-value=0.92  Score=38.51  Aligned_cols=31  Identities=32%  Similarity=0.551  Sum_probs=28.4

Q ss_pred             EEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ++|||+|.-|+-+|..|+..|  ++.|++...-
T Consensus         2 VlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~V   34 (312)
T cd01489           2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTI   34 (312)
T ss_pred             EEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCc
Confidence            789999999999999999999  8999988753

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=86.43  E-value=1.4  Score=37.36  Aligned_cols=32  Identities=22%  Similarity=0.325  Sum_probs=28.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC---cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH---TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG   37 (177)
                      ..-+.|||+|..|+.+|..|+..+   .++|++.-
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~   40 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN   40 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            357999999999999999999988   69999873

>TIGR00518 alaDH alanine dehydrogenase

Probab=86.42  E-value=1.1  Score=38.84  Aligned_cols=31  Identities=23%  Similarity=0.266  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -+++|||+|..|..+|..|...| +|.+++.-
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~  199 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGATVTILDIN  199 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            56999999999999999999999 99999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>KOG2495|consensus

Probab=86.39  E-value=0.38  Score=42.60  Aligned_cols=34  Identities=35%  Similarity=0.401  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHh--------------CC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSL--------------HH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~--------------~g-~VLvLEaG~~~   40 (177)
                      --+||||||+.|.-.|++|+.              .- +|.||||.+..
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i  267 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI  267 (491)
T ss_pred             EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
Confidence            457999999999999999984              11 89999999853

>KOG2018|consensus

Probab=86.34  E-value=0.85  Score=39.01  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=28.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      .=+||||+|--|+-+++-|.++|  ++.+++--.
T Consensus        75 syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdq  108 (430)
T KOG2018|consen   75 SYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQ  108 (430)
T ss_pred             cEEEEEecCchhHHHHHHHHHhcCceEEEechhh
Confidence            34789999999999999999999  898887654

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=86.32  E-value=1.1  Score=37.50  Aligned_cols=30  Identities=30%  Similarity=0.481  Sum_probs=26.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH---TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~   38 (177)
                      +.|||+|..|.++|..|++.+   .|.|++.-.
T Consensus         3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~   35 (306)
T cd05291           3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINE   35 (306)
T ss_pred             EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            789999999999999999988   689998744

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=86.30  E-value=1.1  Score=37.66  Aligned_cols=29  Identities=28%  Similarity=0.485  Sum_probs=26.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEec
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEA   36 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEa   36 (177)
                      -+.|||+|.-|+.+|.-|+..+  .|++++.
T Consensus         3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi   33 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEKELADLVLLDV   33 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            3789999999999999999987  7999998

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=86.30  E-value=1.1  Score=36.38  Aligned_cols=34  Identities=24%  Similarity=0.244  Sum_probs=29.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ..-++|||.|.-|+.+|..|+..|  ++.|++.-.-
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V   46 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV   46 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence            467999999999999999999999  8888887653

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=86.17  E-value=0.97  Score=42.52  Aligned_cols=30  Identities=17%  Similarity=0.313  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -+.|||+|+.|+-+|..+|.+| .|.|+|.-
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~  345 (714)
T TIGR02437       315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDIN  345 (714)
T ss_pred             eEEEECCchHHHHHHHHHHhCCCeEEEEeCC
Confidence            3789999999999999999999 99999854

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=86.13  E-value=1.2  Score=37.50  Aligned_cols=31  Identities=32%  Similarity=0.455  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~   38 (177)
                      .+.|||+|..|+.+|..|+..+   .|+|++.-.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            3789999999999999999988   699999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12831 putative oxidoreductase; Provisional

Probab=86.10  E-value=1.1  Score=39.73  Aligned_cols=32  Identities=16%  Similarity=0.058  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|||+|..|.-+|..|++.| +|.|+++...
T Consensus       283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~  315 (464)
T PRK12831        283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE  315 (464)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            7999999999999999999999 9999987654

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=86.04  E-value=0.99  Score=42.46  Aligned_cols=31  Identities=19%  Similarity=0.326  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -+.|||+|+.|.-+|..+|.+| .|.|+|.-.
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (715)
T PRK11730        315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ  346 (715)
T ss_pred             eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence            3789999999999999999999 999988654

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=85.94  E-value=1.6  Score=29.40  Aligned_cols=30  Identities=27%  Similarity=0.334  Sum_probs=26.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhC-C-cEEEEec
Q psy2463           7 SLENIVGAGTAGCVLANRLSLH-H-TVLLIEA   36 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEa   36 (177)
                      -.++|+|+|..|..+|..|.+. + +|.+.++
T Consensus        24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3689999999999999999998 4 8888877

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=85.88  E-value=1.3  Score=39.91  Aligned_cols=30  Identities=33%  Similarity=0.438  Sum_probs=26.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -+-|||+|.-|.-+|..|+.+| .|.|.+.-
T Consensus         9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~   39 (507)
T PRK08268          9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDAR   39 (507)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            4789999999999999999999 99887743

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=85.72  E-value=1.6  Score=32.42  Aligned_cols=32  Identities=31%  Similarity=0.454  Sum_probs=27.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCC---cEEEEecCCC
Q psy2463           8 LENIVGA-GTAGCVLANRLSLHH---TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~-G~aG~v~A~rLa~~g---~VLvLEaG~~   39 (177)
                      .+.|||+ |.-|..+|..|...+   .+.|++.-..
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~   37 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED   37 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence            3789999 999999999999988   6888887643

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=85.67  E-value=1.2  Score=38.28  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ..-++|||.|..|+.+|..|+..|  ++.|++...
T Consensus        28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            467999999999999999999999  899998875

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=85.67  E-value=1.2  Score=38.66  Aligned_cols=33  Identities=27%  Similarity=0.415  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ..-++|||.|..|+.+|..|+..|  ++.+++...
T Consensus        41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            467999999999999999999999  899998874

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=85.59  E-value=1.4  Score=36.83  Aligned_cols=37  Identities=16%  Similarity=0.273  Sum_probs=29.8

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC---cEEEEecC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH---TVLLIEAG   37 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG   37 (177)
                      |+....-.+.|||.|..|..+|..|.+.+   +|.+.+.-
T Consensus         1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~   40 (307)
T PRK07502          1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS   40 (307)
T ss_pred             CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            55544456999999999999999999887   67777764

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=85.24  E-value=1.3  Score=38.95  Aligned_cols=33  Identities=12%  Similarity=0.086  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      -.++|||+|..|.-+|..|++.+  +|.|+++...
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~  308 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR  308 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            36999999999999999999887  7999998643

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=85.23  E-value=1.2  Score=39.90  Aligned_cols=30  Identities=23%  Similarity=0.330  Sum_probs=27.3

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +-|||+|.-|..+|.+|+.+| +|.|.+.-+
T Consensus         7 IavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          7 AACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            789999999999999999999 999988643

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=84.90  E-value=1.3  Score=38.68  Aligned_cols=33  Identities=21%  Similarity=0.144  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ..-++|||.|--|+.+|..|+..|  ++.|++-..
T Consensus        42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            467999999999999999999999  899988775

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=84.89  E-value=1.4  Score=36.82  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .-++|||.|..|..+|.+|...| +|.+.++-.
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999999999999999999 999988754

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.84  E-value=1.3  Score=38.73  Aligned_cols=31  Identities=16%  Similarity=0.135  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -++|+|+|..|..+|..|++.| +|++.+...
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3799999999999999999999 999988654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=84.75  E-value=1.2  Score=40.52  Aligned_cols=31  Identities=29%  Similarity=0.298  Sum_probs=26.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .|+|||+|.+|+=+|.+|++.. +|.+.=+.+
T Consensus       185 rVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~  216 (531)
T PF00743_consen  185 RVLVVGGGNSGADIAVELSRVAKKVYLSTRRG  216 (531)
T ss_dssp             EEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred             EEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence            6999999999999999999988 887766554

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=84.55  E-value=1.6  Score=36.43  Aligned_cols=30  Identities=17%  Similarity=0.313  Sum_probs=26.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-c-EEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-T-VLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG   37 (177)
                      -++|+|+|-+|..+|..|++.| + |.|+.+-
T Consensus       128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~  159 (289)
T PRK12548        128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIK  159 (289)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            5799999999999999999999 4 9888764

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=84.36  E-value=1.4  Score=39.44  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=27.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~   38 (177)
                      .+.|||.|..|+++|..||+.|   +|+.+|.-.
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            3889999999999999999984   798888654

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=84.23  E-value=1.4  Score=36.28  Aligned_cols=29  Identities=31%  Similarity=0.248  Sum_probs=26.7

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +.|||.|.-|..+|..|++.| +|++.+.-
T Consensus         3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~   32 (279)
T PRK07417          3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRR   32 (279)
T ss_pred             EEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            789999999999999999999 99998864

>PRK07411 hypothetical protein; Validated

Probab=84.14  E-value=1.4  Score=38.37  Aligned_cols=33  Identities=15%  Similarity=0.133  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ..-++|||.|.-|+.+|..|+..|  ++.|++...
T Consensus        38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~   72 (390)
T PRK07411         38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV   72 (390)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            467999999999999999999999  899988875

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=83.79  E-value=1.7  Score=38.37  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      -.++|+|.|+-|..+|.+|...| +|+++|.-+.
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            36899999999999999999999 9999987543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=83.60  E-value=1.4  Score=41.62  Aligned_cols=31  Identities=23%  Similarity=0.228  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -+-|||+|+-|+-+|..++.+| .|.|+|.-.
T Consensus       337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~  368 (737)
T TIGR02441       337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP  368 (737)
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence            3789999999999999999999 999998643

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK08017 oxidoreductase; Provisional

Probab=83.55  E-value=1.9  Score=34.13  Aligned_cols=29  Identities=24%  Similarity=0.095  Sum_probs=26.1

Q ss_pred             EEEECC-ChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVGA-GTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ++|+|+ |.-|..+|.+|++.| +|+++.+-
T Consensus         5 vlVtGasg~IG~~la~~l~~~g~~v~~~~r~   35 (256)
T PRK08017          5 VLITGCSSGIGLEAALELKRRGYRVLAACRK   35 (256)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            899998 999999999999999 99888654

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=83.53  E-value=1  Score=37.82  Aligned_cols=35  Identities=29%  Similarity=0.233  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ....++|||.|--|+-+|..|+..|  ++.|++-..-
T Consensus        18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~v   54 (286)
T cd01491          18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPC   54 (286)
T ss_pred             hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Confidence            3578999999999999999999999  8999887753

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK06223 malate dehydrogenase; Reviewed

Probab=83.45  E-value=1.9  Score=35.97  Aligned_cols=29  Identities=38%  Similarity=0.622  Sum_probs=26.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEec
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEA   36 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEa   36 (177)
                      -+.|||+|.-|..+|..|+..+  .|.|++.
T Consensus         4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~   34 (307)
T PRK06223          4 KISIIGAGNVGATLAHLLALKELGDVVLFDI   34 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence            4789999999999999999977  7999987

>KOG2403|consensus

Probab=83.37  E-value=1.1  Score=40.96  Aligned_cols=32  Identities=28%  Similarity=0.196  Sum_probs=27.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      ..||.+|||+|-||+-.|..|+|.+ +|.++-.
T Consensus        54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itk   86 (642)
T KOG2403|consen   54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITK   86 (642)
T ss_pred             eeceeEEEeccchhhhhhhhhhhcCceEEEEec
Confidence            3599999999999999999999999 7766543

>PRK07454 short chain dehydrogenase; Provisional

Probab=83.33  E-value=2.4  Score=33.32  Aligned_cols=37  Identities=19%  Similarity=0.179  Sum_probs=29.0

Q ss_pred             CCCCccccEEEECC-ChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           1 MPTEYLSLENIVGA-GTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         1 ~~~~~~~D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      |..+..--++|.|+ |.-|..+|.+|++.| +|.++.+-
T Consensus         1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~   39 (241)
T PRK07454          1 MSLNSMPRALITGASSGIGKATALAFAKAGWDLALVARS   39 (241)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            44444445788885 888999999999999 99998764

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=83.25  E-value=1.6  Score=40.36  Aligned_cols=34  Identities=15%  Similarity=0.121  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +-.+||+|.|.-|..+|..|.+.+ +|++||.-++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~  434 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD  434 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHH
Confidence            357999999999999999999999 9999998764

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=83.15  E-value=2.2  Score=32.13  Aligned_cols=31  Identities=26%  Similarity=0.229  Sum_probs=27.1

Q ss_pred             EEEECC-ChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           9 ENIVGA-GTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ++|+|+ |..|..++.+|.+.+ +|.++=+.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~   33 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS   33 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence            689996 999999999999999 8888777654

...

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=83.13  E-value=1.9  Score=35.84  Aligned_cols=31  Identities=16%  Similarity=0.171  Sum_probs=27.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      -.++|||+|-++..+|..|++.|  +|.|+-+-
T Consensus       126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt  158 (282)
T TIGR01809       126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRN  158 (282)
T ss_pred             ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999998  78887653

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK07326 short chain dehydrogenase; Provisional

Probab=82.77  E-value=2  Score=33.55  Aligned_cols=30  Identities=20%  Similarity=0.246  Sum_probs=25.4

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGA-GTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -++|+|+ |.-|..+|.+|++.| +|+++-+-
T Consensus         8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r~   39 (237)
T PRK07326          8 VALITGGSKGIGFAIAEALLAEGYKVAITARD   39 (237)
T ss_pred             EEEEECCCCcHHHHHHHHHHHCCCEEEEeeCC
Confidence            4778875 999999999999999 99888654

>PRK07060 short chain dehydrogenase; Provisional

Probab=82.74  E-value=2.7  Score=32.97  Aligned_cols=31  Identities=19%  Similarity=0.125  Sum_probs=26.6

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGA-GTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -++|.|+ |..|..+|.+|++.| +|+++.+..
T Consensus        11 ~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~   43 (245)
T PRK07060         11 SVLVTGASSGIGRACAVALAQRGARVVAAARNA   43 (245)
T ss_pred             EEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4788887 799999999999999 999887643

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=82.65  E-value=1.8  Score=39.38  Aligned_cols=29  Identities=31%  Similarity=0.363  Sum_probs=26.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      -++|+|+|-+|..+|..|++.| +|.++.+
T Consensus       381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR  410 (529)
T PLN02520        381 LFVVIGAGGAGKALAYGAKEKGARVVIANR  410 (529)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEcC
Confidence            4799999999999999999999 9988865

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=82.32  E-value=2.4  Score=31.98  Aligned_cols=30  Identities=20%  Similarity=0.340  Sum_probs=24.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+-+||-|..|..+|.+|.++| +|.+-++-
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~   33 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRS   33 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred             EEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence            3678999999999999999999 99988755

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=82.28  E-value=1.8  Score=36.73  Aligned_cols=30  Identities=27%  Similarity=0.437  Sum_probs=27.1

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +-|||+|.-|.-+|..+|..| .|.+.+.-.
T Consensus         6 v~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~   36 (307)
T COG1250           6 VAVIGAGVMGAGIAAVFALAGYDVVLKDISP   36 (307)
T ss_pred             EEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence            679999999999999999987 999988763

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=82.27  E-value=2.1  Score=35.07  Aligned_cols=30  Identities=27%  Similarity=0.256  Sum_probs=27.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .++|+|+|-+|..+|..|++.+ +|.++.+-
T Consensus       119 ~vliiGaGg~g~aia~~L~~~g~~v~v~~R~  149 (270)
T TIGR00507       119 RVLIIGAGGAARAVALPLLKADCNVIIANRT  149 (270)
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5899999999999999999999 89888654

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=82.20  E-value=2.2  Score=36.08  Aligned_cols=29  Identities=24%  Similarity=0.394  Sum_probs=25.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC---cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH---TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG   37 (177)
                      +.|||+|.-|..+|..|+..+   .++|++.=
T Consensus         2 i~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   33 (307)
T cd05290           2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVN   33 (307)
T ss_pred             EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            689999999999999999887   68999863

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=82.18  E-value=2.2  Score=37.64  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC----cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH----TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g----~VLvLEaG~~   39 (177)
                      .+.-++|.|+|+||+.+|..|...+    +|.++++-+-
T Consensus       198 ~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~  236 (432)
T COG0281         198 KDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL  236 (432)
T ss_pred             cceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence            3567899999999999999999987    6999988653

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=81.65  E-value=2.8  Score=31.84  Aligned_cols=32  Identities=19%  Similarity=0.113  Sum_probs=27.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .-++|+|+|..|.-+|.-|..-| +|.++|.-.
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            46899999999999999999999 999988754

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=81.64  E-value=2.3  Score=35.82  Aligned_cols=32  Identities=31%  Similarity=0.241  Sum_probs=25.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      ++|||+|.+|..+|.+|.+..   .|.++......
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~   35 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKY   35 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCC
Confidence            589999999999999988843   77777776543

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=81.52  E-value=2.2  Score=40.19  Aligned_cols=32  Identities=16%  Similarity=0.082  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-c-EEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-T-VLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~~   39 (177)
                      .++|||+|..|.-+|..|.+.| + |.|+++...
T Consensus       572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            6899999999999999999988 5 999998754

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=81.49  E-value=1.9  Score=35.59  Aligned_cols=30  Identities=17%  Similarity=0.296  Sum_probs=26.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +-|||.|.-|..+|.+|++.| +|.+.++-+
T Consensus         2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            679999999999999999999 999887654

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=81.45  E-value=2.5  Score=32.66  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=26.6

Q ss_pred             ccEEEECC-ChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           7 SLENIVGA-GTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -.++|+|+ |..|..+|..|++.+ +|.++-+.
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            46899996 999999999999999 88888543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=81.43  E-value=2  Score=40.44  Aligned_cols=31  Identities=16%  Similarity=0.166  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHH-hCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLS-LHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa-~~g-~VLvLEaG~   38 (177)
                      -+.|||+|+.|+-+|..++ ..| .|.|.|.-.
T Consensus       311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            4789999999999999999 778 999988743

>PRK06153 hypothetical protein; Provisional

Probab=81.41  E-value=1.9  Score=37.81  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      ..-+.|||.|-.|+.+|..||+.|  ++.|++...-.
T Consensus       176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve  212 (393)
T PRK06153        176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFL  212 (393)
T ss_pred             hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEec
Confidence            357899999999999999999999  89998877543

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=81.27  E-value=2.1  Score=34.33  Aligned_cols=26  Identities=35%  Similarity=0.484  Sum_probs=24.2

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEE
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLI   34 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvL   34 (177)
                      +.|+|.|--|..+|.||+..+ .|.+-
T Consensus         4 ~~i~GtGniG~alA~~~a~ag~eV~ig   30 (211)
T COG2085           4 IAIIGTGNIGSALALRLAKAGHEVIIG   30 (211)
T ss_pred             EEEeccChHHHHHHHHHHhCCCeEEEe
Confidence            689999999999999999999 88886

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=81.27  E-value=2.1  Score=35.71  Aligned_cols=31  Identities=35%  Similarity=0.557  Sum_probs=27.0

Q ss_pred             EEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      +.|||+|..|..+|..|+..+  .|.|++.-..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence            469999999999999999877  8999988653

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=81.15  E-value=2.4  Score=35.36  Aligned_cols=30  Identities=27%  Similarity=0.293  Sum_probs=26.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      -++|+|+|-++..+|..|++.|  +|.|+.+-
T Consensus       129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~  160 (283)
T PRK14027        129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            5899999999999999999988  78888653

>KOG2852|consensus

Probab=81.07  E-value=0.84  Score=38.76  Aligned_cols=34  Identities=26%  Similarity=0.294  Sum_probs=29.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-------cEEEEecC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-------TVLLIEAG   37 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-------~VLvLEaG   37 (177)
                      .+.-.++|||+|..|+-.|.-|++.+       .|.++|.-
T Consensus         8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~   48 (380)
T KOG2852|consen    8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK   48 (380)
T ss_pred             CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence            44567999999999999999999975       68999974

>PLN02602 lactate dehydrogenase

Probab=80.81  E-value=3  Score=35.97  Aligned_cols=32  Identities=19%  Similarity=0.432  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~   38 (177)
                      .-+.|||+|.-|..+|..|+..+   .++|++.-.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~   72 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP   72 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            57899999999999999999887   689998743

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=80.77  E-value=3.2  Score=29.72  Aligned_cols=28  Identities=29%  Similarity=0.383  Sum_probs=22.6

Q ss_pred             EEEEC-CChHHHHHHHHHHhCC--cEEEEec
Q psy2463           9 ENIVG-AGTAGCVLANRLSLHH--TVLLIEA   36 (177)
Q Consensus         9 ~IVVG-~G~aG~v~A~rLa~~g--~VLvLEa   36 (177)
                      +.||| +|..|..+...|++.+  .++.|-.
T Consensus         2 V~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~   32 (121)
T PF01118_consen    2 VAIVGATGYVGRELLRLLAEHPDFELVALVS   32 (121)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTSTEEEEEEEE
T ss_pred             EEEECCCCHHHHHHHHHHhcCCCccEEEeee
Confidence            67999 9999999999999987  5444433

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=80.71  E-value=2.4  Score=34.25  Aligned_cols=27  Identities=19%  Similarity=0.276  Sum_probs=24.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEE
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLI   34 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvL   34 (177)
                      .++|||||..+.-=+..|.+.+ +|.|+
T Consensus        27 ~VLVVGGG~VA~RK~~~Ll~~gA~VtVV   54 (223)
T PRK05562         27 KVLIIGGGKAAFIKGKTFLKKGCYVYIL   54 (223)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            4999999999999889999988 88776

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=80.71  E-value=2.6  Score=35.66  Aligned_cols=32  Identities=19%  Similarity=0.340  Sum_probs=27.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~   38 (177)
                      .-+.|||+|.-|..+|..|+..+   .++|++.=.
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            45899999999999999999887   689998643

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=80.56  E-value=1.6  Score=38.14  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -|+-|||+|.+|.-+|.-||--- .|.|||-.+..
T Consensus       355 K~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL  389 (520)
T COG3634         355 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL  389 (520)
T ss_pred             ceEEEECCCcchHHHHHhHHhhhheeeeeecchhh
Confidence            58999999999999999999766 99999988764

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=80.47  E-value=3  Score=33.88  Aligned_cols=32  Identities=25%  Similarity=0.146  Sum_probs=28.5

Q ss_pred             EEEEC-CChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           9 ENIVG-AGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         9 ~IVVG-~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ++|.| +|.-|..++.+|.+.| .|..+.+....
T Consensus         3 ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~   36 (314)
T COG0451           3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDG   36 (314)
T ss_pred             EEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence            78999 5999999999999999 99999987653

>PRK08177 short chain dehydrogenase; Provisional

Probab=80.30  E-value=3.3  Score=32.36  Aligned_cols=31  Identities=26%  Similarity=0.224  Sum_probs=26.3

Q ss_pred             EEEEC-CChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           9 ENIVG-AGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG-~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ++|+| +|.-|..+|.+|++.| +|+++.+.+.
T Consensus         4 vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~   36 (225)
T PRK08177          4 ALIIGASRGLGLGLVDRLLERGWQVTATVRGPQ   36 (225)
T ss_pred             EEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            67777 6778899999999999 9999987654

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=80.15  E-value=2.5  Score=37.15  Aligned_cols=31  Identities=19%  Similarity=0.311  Sum_probs=27.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +.|||+|.-|++.|.-||+.| .|+.++--+.
T Consensus         3 I~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           3 ITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             eEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            679999999999999999999 9999887653

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=80.06  E-value=2.5  Score=39.74  Aligned_cols=31  Identities=19%  Similarity=0.200  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHH-hCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLS-LHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa-~~g-~VLvLEaG~   38 (177)
                      -+.|||+|+-|+-+|..+| ..| .|.|+|.-+
T Consensus       306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~  338 (699)
T TIGR02440       306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINP  338 (699)
T ss_pred             EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            3789999999999999998 478 999988754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		9e-14
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		2e-08
3red_A	521	3.0 A Structure Of The Prunus Mume Hydroxynitrile L		2e-06
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		6e-06
3gdn_A	521	Almond Hydroxynitrile Lyase In Complex With Benzald		2e-05
1ju2_A	536	Crystal Structure Of The Hydroxynitrile Lyase From		2e-05

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 11  IVGAGTAGCVLANRLSLH--HTVLLIEAGDFPS---FWSNIPLTSPILQRSEHDWQYETA 65
           IVG G+AG +LA RLS      VLLIEAG+ P+    W+  P   P LQ   +DW Y T 
Sbjct: 22  IVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWN--PAAWPALQGRSYDWDYRTE 79
Query: 66  PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
            QA ++G        W RG+++GGS  ++ + +  G P DF+AW
Sbjct: 80  AQAGTAG----RAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAW 119

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 11  IVGAGTAGCVLANRLSLHH--TVLLIEAG--DFPSFWSNIPLTSP-ILQRSEHDWQYETA 65
           +VGAG AG V+A RL+     +VL++EAG  D     +  PL +P ++  S  DW Y T 
Sbjct: 7   VVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTT 66
Query: 66  PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
            QA    G       +PRG++LGGS  ++ +    G  EDF+ + 
Sbjct: 67  AQA----GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYA 107

>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 11  IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANS 70
           IVG GT+GC LA  LS  + VL++E G  P+ + N+  +   +   + +   +T  +   
Sbjct: 31  IVGGGTSGCPLAATLSEKYKVLVLERGTLPTAYPNLLTSDGFIYNLQQEDDGQTPVERFV 90
Query: 71  SGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSK 120
           SG   ++V    RG+VLGG+  IN   +     + F A G  +D   V++
Sbjct: 91  SGDGIDDV----RGRVLGGTSMINAGVYARANTKIFSASGIEWDMDLVNQ 136

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 11  IVGAGTAGCVLANRLSLHH--TVLLIEAG-----DFPSFWSNIPLTSPILQRSEHDWQYE 63
           IVG GTAG  +A RL+ +   TVL++EAG     D P   +  P ++  L+ S++DW Y+
Sbjct: 11  IVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITT--PSSAMDLRNSKYDWAYK 68
Query: 64  T--APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
           T    + +     K N     RGK LGGS  +N      G    F+ W
Sbjct: 69  TTMVRRDDYERIEKPNT----RGKTLGGSSSLNYFTWVPGHKATFDQW 112

>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 11  IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANS 70
           IVG GT+GC LA  LS  + VL++E G  P+ + N+      +   + +   +T  +   
Sbjct: 31  IVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFV 90
Query: 71  SGGLKNNVSFWPRGKVLGGSGQIN 94
           S    +NV    RG+VLGG+  IN
Sbjct: 91  SEDGIDNV----RGRVLGGTSIIN 110

>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 11  IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANS 70
           IVG GT+GC LA  LS  + VL++E G  P+ + N+      +   + +   +T  +   
Sbjct: 31  IVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFV 90
Query: 71  SGGLKNNVSFWPRGKVLGGSGQIN 94
           S    +NV    RG+VLGG+  IN
Sbjct: 91  SEDGIDNV----RGRVLGGTSIIN 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	4e-34
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	2e-33
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	9e-33
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	2e-31
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	3e-31
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	3e-30
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	2e-29
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	7e-26
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	2e-11
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	4e-09
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	1e-05
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	1e-05
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	9e-05
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	1e-04
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-04
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	9e-04

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  124 bits (315), Expect = 4e-34
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 11  IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANS 70
           IVG GT+GC LA  LS  + VL++E G  P+ + N+      +   + +   +T  +   
Sbjct: 31  IVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVER-- 88

Query: 71  SGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGP-WFDYGNV 118
              +  +     RG+VLGG+  IN   +       + A G  W D   V
Sbjct: 89  --FVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDW-DMDLV 134

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  123 bits (310), Expect = 2e-33
 Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 9/104 (8%)

Query: 11  IVGAGTAGCVLANRLSL--HHTVLLIEAG--DFPSFWSNIPLTSPILQR-SEHDWQYETA 65
           +VGAG AG V+A RL+     +VL++EAG  D     +  PL +P L   S  DW Y T 
Sbjct: 7   VVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTT 66

Query: 66  PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
            QA    G       +PRG++LGGS  ++ +    G  EDF+ +
Sbjct: 67  AQA----GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRY 106

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  121 bits (306), Expect = 9e-33
 Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 13/105 (12%)

Query: 11  IVGAGTAGCVLANRLS--LHHTVLLIEAGDF---PSFWSNIPLTSPILQRSEHDWQYETA 65
           I G G  G  +A +L+      VL+IE G +          P     +  +  D  Y T 
Sbjct: 29  IAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTV 88

Query: 66  PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYD-GRPEDFEAW 109
           P  N      N  +    GK LGGS  IN    +        ++W
Sbjct: 89  PLIN------NRTNNIKAGKGLGGSTLINGD-SWTRPDKVQIDSW 126

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  117 bits (296), Expect = 2e-31
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 12/105 (11%)

Query: 11  IVGAGTAGCVLANRLS--LHHTVLLIEAGDFP---SFWSNIPLTSPILQRSEHDWQYETA 65
           I G G  G   A RL+   + +VL+IE+G +                +  S  D  YET 
Sbjct: 24  IAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETV 83

Query: 66  PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYD-GRPEDFEAW 109
                     N  +    G  LGGS  +N    +        ++W
Sbjct: 84  EL-----ATNNQTALIRSGNGLGGSTLVNGG-TWTRPHKAQVDSW 122

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  116 bits (294), Expect = 3e-31
 Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 9/103 (8%)

Query: 11  IVGAGTAGCVLANRLS--LHHTVLLIEAG--DFPSFWSNIPLTSPILQRSEHDWQYETAP 66
           IVG G+AG +LA RLS      VLLIEAG           P   P LQ   +DW Y T  
Sbjct: 22  IVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPT-DPDIWNPAAWPALQGRSYDWDYRTEA 80

Query: 67  QANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
           QA    G       W RG+++GGS  ++ + +  G P DF+AW
Sbjct: 81  QA----GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAW 119

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  114 bits (288), Expect = 3e-30
 Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 11  IVGAGTAGCVLANRLSL--HHTVLLIEAGDF---PSFWSNIPLTSPILQRSEHDWQYETA 65
           IVG GTAG  +A RL+   + TVL++EAG            P ++  L+ S++DW Y+T 
Sbjct: 11  IVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTT 70

Query: 66  PQANSSGGLKNNVSFWP--RGKVLGGSGQINLLNHYDGRPEDFEAW 109
                           P  RGK LGGS  +N      G    F+ W
Sbjct: 71  MVR----RDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQW 112

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  111 bits (280), Expect = 2e-29
 Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 11  IVGAGTAGCVLANRLS--LHHTVLLIEAG--DFPSFWSNIPL-TSPILQRSEHDWQYETA 65
           +VG G+AG  +A RLS     +V L+EAG  D       + L     L  S +DW Y   
Sbjct: 18  VVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR-GVPEVLQLDRWMELLESGYDWDYPIE 76

Query: 66  PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
           PQ N      N+     R KV+GG    N    +    ED + W
Sbjct: 77  PQENG-----NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEW 115

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  101 bits (255), Expect = 7e-26
 Identities = 27/119 (22%), Positives = 39/119 (32%), Gaps = 16/119 (13%)

Query: 11  IVGAGTAGCVLANRLSLH-HTVLLIEAG--DFPSFWSNIP----LTSPILQRSEH---DW 60
           IVGAG  G + A+RLS     VLL+E G                 TS  L + +      
Sbjct: 12  IVGAGPGGIIAADRLSEAGKKVLLLERGGPST-KQTGGTYVAPWATSSGLTKFDIPGLFE 70

Query: 61  QYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPW-FDYGNV 118
              T                   G ++GG   +N   ++     DF +   W   + N 
Sbjct: 71  SLFTDSNP----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNH 125

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 60.8 bits (147), Expect = 2e-11
 Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 21/126 (16%)

Query: 11  IVGAGTAGCVLANRLSLH-HTVLLIEAG-----------DFPSFWSNIPLTSPILQRSEH 58
           ++G G    V A RL       L++E G            F    +    +S    R+E 
Sbjct: 10  VIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEA 69

Query: 59  D-----WQYETAPQANSSGGLKNNVSF----WPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
                 W        +   G+ + V++       G+ +GG   +N     + +   FE  
Sbjct: 70  PLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEI 129

Query: 110 GPWFDY 115
            P  D 
Sbjct: 130 LPRVDS 135

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 53.6 bits (128), Expect = 4e-09
 Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 20/125 (16%)

Query: 11  IVGAGTAGCVLANRLSLH-HTVLLIEAG-----------DFP--------SFWSNIPLTS 50
           ++G+G  G V A RL+       ++E G            F         S W       
Sbjct: 16  VIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQ 75

Query: 51  PILQRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
           P+                      + +     +G+ +GG   +N       +   FE   
Sbjct: 76  PVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL 135

Query: 111 PWFDY 115
           P  D 
Sbjct: 136 PSVDS 140

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSF 42
          ++GAG AG V A+ ++     V ++E   FP F
Sbjct: 10 VIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRF 42

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSF 42
          ++G G  G  LA+ +++  H VLL+E   FP  
Sbjct: 12 VIGGGPGGSTLASFVAMRGHRVLLLEREAFPRH 44

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 41.1 bits (96), Expect = 9e-05
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSF 42
          I+G G AG V    L    H V + E   FP +
Sbjct: 28 IIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY 60

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 20/156 (12%), Positives = 36/156 (23%), Gaps = 56/156 (35%)

Query: 11  IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQA- 68
           IVG+G  GC  A  L    + V + + G+  S           ++  ++  ++    Q  
Sbjct: 51  IVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQ 110

Query: 69  --------------------------------NSSGGLKNNVSFWPRGKVLGGSGQINLL 96
                                           N       N+S     +V+GG       
Sbjct: 111 LMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMS----- 165

Query: 97  NHYDG-----RPEDFEA------------WGPWFDY 115
             +         E                W   +  
Sbjct: 166 TAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTK 201

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWS 44
          I+G G AG   A +LS     +LL+++  +     
Sbjct: 11 IIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGD 45

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 37.8 bits (87), Expect = 9e-04
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGD 38
          IVGAG AG VLA RL+     VL+++   
Sbjct: 34 IVGAGFAGSVLAERLASSGQRVLIVDRRP 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	100.0
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	100.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	100.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	100.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	100.0
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	99.98
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	99.95
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	99.95
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	99.93
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	99.89
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.84
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.75
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.52
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.5
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.5
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.46
3dme_A	369	Conserved exported protein; structural genomics, P	98.46
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.46
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.46
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.45
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.44
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.44
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.42
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.4
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.39
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.39
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.37
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.37
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.36
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.34
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.33
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.33
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.33
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.32
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.31
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.31
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.3
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.29
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.28
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.27
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.27
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.27
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.26
3atr_A	453	Conserved archaeal protein; saturating double bond	98.25
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.25
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.24
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.24
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.23
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.22
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.22
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.22
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.22
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.22
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.22
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.22
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.21
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.21
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.21
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.21
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.2
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.2
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.2
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.2
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.2
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.19
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.19
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.18
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.18
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.18
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.18
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.17
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.17
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.17
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.17
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.16
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.16
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.16
4dna_A	463	Probable glutathione reductase; structural genomic	98.16
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.16
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.15
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.15
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.15
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.14
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.14
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.14
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.14
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.13
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.13
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.13
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.12
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.11
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.11
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.1
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.1
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.1
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.1
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.09
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.09
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.09
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.09
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.08
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.08
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.08
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.08
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.07
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.06
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.05
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.05
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.05
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.04
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.04
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.04
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.03
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.02
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.02
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.01
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.01
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.01
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.0
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.0
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.0
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.0
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.99
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.99
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.99
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.98
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.98
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.98
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.98
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.97
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.97
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.97
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.96
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.96
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.96
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.96
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.95
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.95
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.95
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.95
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.94
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.94
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.94
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.93
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.93
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.93
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.92
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.92
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.92
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.92
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.92
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.9
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.9
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.9
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.9
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.89
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.88
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.88
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.86
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.83
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.82
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.81
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.81
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.81
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.8
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.8
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.79
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.79
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.78
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.78
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.77
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.76
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.75
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.73
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.71
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.71
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.69
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.67
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.65
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.64
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.63
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.61
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.59
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.59
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.58
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.57
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.57
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.53
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.52
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.51
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.48
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.48
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.48
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.46
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.45
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.44
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.44
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.36
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.32
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.32
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.31
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.29
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.24
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.22
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.16
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.15
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.14
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.11
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.02
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.92
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.84
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.67
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.36
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.22
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	95.7
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.69
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.63
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.38
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.29
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.16
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.1
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	94.96
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	94.95
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	94.87
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.85
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	94.79
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.75
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	94.74
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.69
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	94.44
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	94.44
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	94.36
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.22
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	94.21
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	94.19
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.05
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.03
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	93.92
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	93.88
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	93.84
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	93.62
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	93.6
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	93.58
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	93.56
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.55
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	93.52
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	93.49
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	93.44
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.44
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	93.38
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	93.3
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	93.23
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	93.17
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	93.16
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	93.1
1ojt_A	482	Surface protein; redox-active center, glycolysis,	93.08
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	93.06
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	93.06
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	93.04
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	93.04
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	92.9
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.83
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	92.82
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	92.79
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	92.75
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	92.74
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.7
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	92.69
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	92.63
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	92.62
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	92.57
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	92.54
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	92.54
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	92.42
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	92.38
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.31
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.31
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	92.24
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	92.23
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	92.19
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	92.15
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	92.11
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.1
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	92.09
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	92.08
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	92.08
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	92.07
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	92.05
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	91.92
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	91.92
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.79
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	91.77
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	91.57
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	91.4
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	91.34
1fec_A	490	Trypanothione reductase; redox-active center, oxid	91.19
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	91.16
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	91.12
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	91.11
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	90.96
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	90.86
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	90.85
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	90.84
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	90.83
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	90.81
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	90.79
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	90.74
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	90.62
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	90.61
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	90.6
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	90.44
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	90.36
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	90.26
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	90.26
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	90.23
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	90.16
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	90.1
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	90.07
3r9u_A	315	Thioredoxin reductase; structural genomics, center	90.01
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	89.94
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	89.63
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	89.61
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	89.56
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	89.45
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	89.38
4dna_A	463	Probable glutathione reductase; structural genomic	89.37
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	89.34
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	89.22
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	89.22
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	89.2
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	89.14
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	89.12
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	89.05
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	88.99
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	88.87
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	88.73
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	88.72
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	88.44
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	88.21
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	88.08
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	87.91
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	87.8
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	87.74
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	87.68
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	87.66
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	87.57
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	87.54
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	87.53
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	87.47
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	87.39
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	87.22
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	87.19
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	87.15
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	87.1
3qha_A	296	Putative oxidoreductase; seattle structural genomi	87.04
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	86.99
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	86.82
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	86.77
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	86.51
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	86.5
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	86.38
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	86.29
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	86.18
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	86.18
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	86.14
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	86.13
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	86.1
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	86.1
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	86.07
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	86.05
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	85.97
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	85.97
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	85.89
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	85.62
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	85.54
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	85.42
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	85.41
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	85.39
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	85.36
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	85.27
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	85.24
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	85.09
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	85.08
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	85.04
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	84.94
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	84.93
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	84.9
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	84.9
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	84.73
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	84.73
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	84.69
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	84.44
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	84.25
3s2u_A	365	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape	84.18
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	84.06
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	84.03
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	84.03
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	83.83
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	83.76
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	83.75
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	83.67
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	83.65
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	83.6
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	83.55
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	83.52
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	83.46
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	83.45
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	83.4
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	83.35
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	83.27
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	83.19
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	83.15
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	83.0
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	82.95
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	82.94
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	82.91
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	82.89
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	82.88
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	82.84
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	82.75
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	82.66
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	82.63
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	82.6
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	82.58
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	82.55
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	82.49
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	82.42
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	82.41
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	82.37
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	82.31
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	82.13
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	82.11
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	82.07
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	81.99
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	81.8
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	81.76
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	81.6
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	81.57
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	81.55
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	81.54
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	81.29
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	81.26
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	81.25
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	81.1
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	81.05
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	81.0
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	81.0
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	80.8
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	80.73
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	80.52
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	80.48
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	80.34
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	80.25
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	80.24
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	80.2
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	80.08

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=100.00  E-value=2.8e-39  Score=289.96  Aligned_cols=165  Identities=21%  Similarity=0.183  Sum_probs=141.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCCC---CCCCCCCCcccccCCCCCCccccCCCCCcCCCCCCCee
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFPS---FWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVS   79 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~~---~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~   79 (177)
                      .+|||||||+|+|||++|+||+|++  +|||||+|++..   +...+|..+...+.+.++|+|.++||.     .+++.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~-----~~~r~~   92 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-----TNNQTA   92 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-----TTSCCC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccC-----CCCCee
Confidence            4799999999999999999999975  999999999422   223444444444567899999999986     477889


Q ss_pred             ecccceeecCCcccccccccCCChhHHhhhC----C-CCCCchHHHHHHHHhcCCCCC----------CCCCCcccccee
Q psy2463          80 FWPRGKVLGGSGQINLLNHYDGRPEDFEAWG----P-WFDYGNVSKVLGHIIGYDRKT----------NVGNNVEDFPVR  144 (177)
Q Consensus        80 ~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~----~-~W~~~~l~pyf~~~E~~~~~~----------~~~~~g~~Gpv~  144 (177)
                      .++|||+|||||+||+|+|.|+++.|||.|+    + +|+|++|+|||+|+|++..+.          +...||.+||++
T Consensus        93 ~~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~hG~~Gpl~  172 (583)
T 3qvp_A           93 LIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVH  172 (583)
T ss_dssp             EECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSEE
T ss_pred             eccCceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCccccCCCCCEE
Confidence            9999999999999999999999999999997    5 999999999999999997652          235799999999


Q ss_pred             ecCC---CCCCchhHHHHHHHHHcCCcCCCccC
Q psy2463         145 VSLS---DTATPGLTSTIPAIVKSKHYLPKLYH  174 (177)
Q Consensus       145 v~~~---~~~~p~~~~~~~a~~~~G~~~~~~~~  174 (177)
                      ++++   ....|+.+.|++|++++|++...++.
T Consensus       173 v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~D~n  205 (583)
T 3qvp_A          173 AGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFG  205 (583)
T ss_dssp             EBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTT
T ss_pred             ecCCCCcccCCHHHHHHHHHHHHcCCCcCCCCC
Confidence            9998   45579999999999999999887754

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=100.00  E-value=2.3e-39  Score=289.73  Aligned_cols=165  Identities=26%  Similarity=0.371  Sum_probs=145.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhC-C-cEEEEecCCCC--CCCCCCCCCccccc-CCCCCCccccCCCCCcCCCCCCCeee
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLH-H-TVLLIEAGDFP--SFWSNIPLTSPILQ-RSEHDWQYETAPQANSSGGLKNNVSF   80 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG~~~--~~~~~~p~~~~~~~-~~~~~w~~~~~p~~~~~~~~~~~~~~   80 (177)
                      +|||||||+|+|||++|+||||+ + +|||||+|+..  .+...+|..+..+. ++.++|+|.++||+.    ++++.+.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~~----~~~r~~~   77 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAG----YNGRSIA   77 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCGG----GTTCCCB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCCC----CCCceEe
Confidence            59999999999999999999995 5 99999999875  24456776554444 478999999999986    7899999


Q ss_pred             cccceeecCCcccccccccCCChhHHhhhC-----CCCCCchHHHHHHHHhcCCCCC---------CCCCCccccceeec
Q psy2463          81 WPRGKVLGGSGQINLLNHYDGRPEDFEAWG-----PWFDYGNVSKVLGHIIGYDRKT---------NVGNNVEDFPVRVS  146 (177)
Q Consensus        81 ~~~g~~lGGsS~in~~~~~R~~~~dfd~w~-----~~W~~~~l~pyf~~~E~~~~~~---------~~~~~g~~Gpv~v~  146 (177)
                      ++|||+|||||+||+|+|+|+.+.|||.|+     ++|+|++|+|||+|+|++..+.         +...||.+||++|+
T Consensus        78 ~~rGk~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~hG~~Gp~~v~  157 (566)
T 3fim_B           78 YPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSIS  157 (566)
T ss_dssp             CCCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGSCBSSSEEEB
T ss_pred             ccCCcEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCccccCCCCCeeee
Confidence            999999999999999999999999999995     7899999999999999987652         12579999999999


Q ss_pred             CCCCCCchhHHHHHHHHHc--CCcCCCccC
Q psy2463         147 LSDTATPGLTSTIPAIVKS--KHYLPKLYH  174 (177)
Q Consensus       147 ~~~~~~p~~~~~~~a~~~~--G~~~~~~~~  174 (177)
                      ++++..|+...|++|++++  |+++..++.
T Consensus       158 ~~~~~~~~~~~~~~a~~~~~~G~~~~~d~n  187 (566)
T 3fim_B          158 LPGFPTPLDDRVLATTQEQSEEFFFNPDMG  187 (566)
T ss_dssp             SCSSCCTHHHHHHHHHHHTHHHHCBCSCGG
T ss_pred             cCCCCCHHHHHHHHHHHHHhcCCCccCCCC
Confidence            9999999999999999999  999887754

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=100.00  E-value=1.7e-37  Score=272.50  Aligned_cols=163  Identities=30%  Similarity=0.403  Sum_probs=141.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhC-C-cEEEEecCCCCC-CCCCCCCCcccccCCCCCCccccCCCCCcCCCCCCCeeecc
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLH-H-TVLLIEAGDFPS-FWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFWP   82 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG~~~~-~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~~   82 (177)
                      +|||||||||+|||++|+||||+ + +|||||+|+... +....|..+..+.+++++|+|.++||..    ++++.+.++
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~~----~~~~~~~~~   92 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRTEAQAG----TAGRAHHWA   92 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCCGGGGSGGGGGGTTTSTTBCCEECCCBGG----GTTBCCEEC
T ss_pred             CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcchhChhhHhhccCCccccCccccccCC----CCCCeEecc
Confidence            69999999999999999999995 4 999999998654 3445666655566788999999999987    688999999


Q ss_pred             cceeecCCcccccccccCCChhHHhhhC-----CCCCCchHHHHHHHHhcCCCCCCCCCCccccceeecCCC-CCCchhH
Q psy2463          83 RGKVLGGSGQINLLNHYDGRPEDFEAWG-----PWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSD-TATPGLT  156 (177)
Q Consensus        83 ~g~~lGGsS~in~~~~~R~~~~dfd~w~-----~~W~~~~l~pyf~~~E~~~~~~~~~~~g~~Gpv~v~~~~-~~~p~~~  156 (177)
                      |||+|||||+||+|+|+|+.+.|||.|+     .+|+|++++|||+++|+.... ....++..||+.+..+. ...|+.+
T Consensus        93 rG~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~-~~~~~~~~g~~~~~~~~~~~~p~~~  171 (526)
T 3t37_A           93 RGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLG-GDGIHGKGGPLPIHLPADEVSPLAR  171 (526)
T ss_dssp             CBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTT-TSSSSCSSCSEECBCCSTTSCHHHH
T ss_pred             CccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCC-CccccCcCCCcCcccccccCCHHHH
Confidence            9999999999999999999999999996     579999999999999998765 33567889999988764 5679999


Q ss_pred             HHHHHHHHcCCcCCCcc
Q psy2463         157 STIPAIVKSKHYLPKLY  173 (177)
Q Consensus       157 ~~~~a~~~~G~~~~~~~  173 (177)
                      .|.++++++|+....+.
T Consensus       172 ~~~~~~~~~G~~~~~~~  188 (526)
T 3t37_A          172 AFIEAGASLGLPRLEGH  188 (526)
T ss_dssp             HHHHHHHHTTCCBCSSS
T ss_pred             HHHHHHHHcCCCcccCC
Confidence            99999999999887654

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=100.00  E-value=8.3e-37  Score=273.70  Aligned_cols=163  Identities=25%  Similarity=0.297  Sum_probs=137.8

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCCC---CCCCCCCCcccccCCCCCCccccCCCCCcCCCCCCCe
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFPS---FWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNV   78 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~~---~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~   78 (177)
                      ..+|||||||+|+|||++|.||||++  +|||||+|+...   +.+.+|..+..+.+++++|+|.++.        +++.
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~~--------~~r~   75 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTM--------VRRD   75 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEEE--------EEET
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEEE--------CCcc
Confidence            45799999999999999999999998  999999998732   3456676665566778999999872        3344


Q ss_pred             ee------cccceeecCCcccccccccCCChhHHhhhC----CCCCCchHHHHHHHHhcCCCCC-----CCCCCccccce
Q psy2463          79 SF------WPRGKVLGGSGQINLLNHYDGRPEDFEAWG----PWFDYGNVSKVLGHIIGYDRKT-----NVGNNVEDFPV  143 (177)
Q Consensus        79 ~~------~~~g~~lGGsS~in~~~~~R~~~~dfd~w~----~~W~~~~l~pyf~~~E~~~~~~-----~~~~~g~~Gpv  143 (177)
                      +.      ++|||+|||||+||+|+|.|+.+.|||.|+    ++|+|++++|||+|.|++..+.     +...||..||+
T Consensus        76 ~~~~~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG~~Gpl  155 (577)
T 3q9t_A           76 DYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPI  155 (577)
T ss_dssp             TEEEEEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGCCSCSE
T ss_pred             ccccccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccCCCCCCE
Confidence            44      999999999999999999999999999997    8999999999999999987653     12368999999


Q ss_pred             eecCCCCCC---chhHHHHHHHHHcCCcCCCccC
Q psy2463         144 RVSLSDTAT---PGLTSTIPAIVKSKHYLPKLYH  174 (177)
Q Consensus       144 ~v~~~~~~~---p~~~~~~~a~~~~G~~~~~~~~  174 (177)
                      ++++++...   |+...|+++++++|+++..++.
T Consensus       156 ~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n  189 (577)
T 3q9t_A          156 PISHAELIDEMAPFRENLTKAWKSMGQPLIENIY  189 (577)
T ss_dssp             EEEECCCCGGGHHHHHHHHHHHHHTTCCBCSCCS
T ss_pred             EeeCCCCCcccchHHHHHHHHHHHcCCCcCCCCC
Confidence            999987643   4888999999999999887753

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=100.00  E-value=1.9e-34  Score=258.57  Aligned_cols=163  Identities=20%  Similarity=0.177  Sum_probs=138.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHh-CC-cEEEEecCCCCC--CCCC-CCCCcccccCCCCCCccccCCCCCcCCCCCCCee
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSL-HH-TVLLIEAGDFPS--FWSN-IPLTSPILQRSEHDWQYETAPQANSSGGLKNNVS   79 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~-~g-~VLvLEaG~~~~--~~~~-~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~   79 (177)
                      .+||+||||+|++|+++|.||++ .+ +|||||+|....  +... +|..+..++.+.++|.|.++|  .    ++++.+
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p--~----~~~~~~   96 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP--L----INNRTN   96 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC--C----TTSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc--C----CCCcee
Confidence            56999999999999999999999 57 999999998653  2223 555443444567899999988  2    577889


Q ss_pred             ecccceeecCCcccccccccCCChhHHhhhC-----CCCCCchHHHHHHHHhcCCCCC----------CCCCCcccccee
Q psy2463          80 FWPRGKVLGGSGQINLLNHYDGRPEDFEAWG-----PWFDYGNVSKVLGHIIGYDRKT----------NVGNNVEDFPVR  144 (177)
Q Consensus        80 ~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~-----~~W~~~~l~pyf~~~E~~~~~~----------~~~~~g~~Gpv~  144 (177)
                      .++|||+|||||+||+|+|+|+++.|||.|+     ++|+|++|+|||+|+|++..+.          +...||.+||++
T Consensus        97 ~~~rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~~~g~~Gpl~  176 (587)
T 1gpe_A           97 NIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQ  176 (587)
T ss_dssp             EECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEE
T ss_pred             eeeccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccccCccccCCCCCEE
Confidence            9999999999999999999999999999996     6899999999999999987651          334688999999


Q ss_pred             ecCC---CCCCchhHHHHHHHHHcCCcCCCcc
Q psy2463         145 VSLS---DTATPGLTSTIPAIVKSKHYLPKLY  173 (177)
Q Consensus       145 v~~~---~~~~p~~~~~~~a~~~~G~~~~~~~  173 (177)
                      ++++   ....|..+.|++|++++|++...++
T Consensus       177 v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~d~  208 (587)
T 1gpe_A          177 SGARDNGQPWSPIMKALMNTVSALGVPVQQDF  208 (587)
T ss_dssp             EBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCT
T ss_pred             EccCCCcCCCCHHHHHHHHHHHHcCCCcCCCC
Confidence            9987   3778999999999999999887654

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=99.98  E-value=1.6e-32  Score=244.20  Aligned_cols=161  Identities=22%  Similarity=0.201  Sum_probs=137.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-C-cEEEEecCCCCCC--CCCCCCCcccccCCCCCCccccCCCCCcCCCCCCCeee
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH-H-TVLLIEAGDFPSF--WSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSF   80 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG~~~~~--~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~   80 (177)
                      ..||+||||+|++|+++|.||+++ + +|||||+|.....  ...+|..+...+++.++|.|.+.||+.     +++.+.
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~-----~~~~~~   86 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQEN-----GNSFMR   86 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCSS-----SCTTCE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccCC-----CCceEE
Confidence            469999999999999999999998 6 9999999986532  233444333333557899999999873     567889


Q ss_pred             cccceeecCCcccccccccCCChhHHhhhC-----CCCCCchHHHHHHHHhcCCCCCC-CCCCccccceeecCCCCCCch
Q psy2463          81 WPRGKVLGGSGQINLLNHYDGRPEDFEAWG-----PWFDYGNVSKVLGHIIGYDRKTN-VGNNVEDFPVRVSLSDTATPG  154 (177)
Q Consensus        81 ~~~g~~lGGsS~in~~~~~R~~~~dfd~w~-----~~W~~~~l~pyf~~~E~~~~~~~-~~~~g~~Gpv~v~~~~~~~p~  154 (177)
                      +++||+|||||+||+|+|.|+.+.|||.|+     ++|+|++|+|||+|+|++..+.+ ...||..||++++.+....+.
T Consensus        87 ~~rGk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~~~~~~~g~~Gpl~v~~~~~~~~~  166 (546)
T 2jbv_A           87 HARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPT  166 (546)
T ss_dssp             ECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCBTTBTTSCBSCSEEEEECCSCCHH
T ss_pred             eecccccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCCCccccCCCCCCEEEecCCCCCHH
Confidence            999999999999999999999999999995     58999999999999999877322 357889999999998888999


Q ss_pred             hHHHHHHHHHcCCcCC
Q psy2463         155 LTSTIPAIVKSKHYLP  170 (177)
Q Consensus       155 ~~~~~~a~~~~G~~~~  170 (177)
                      .+.|.++++++|++..
T Consensus       167 ~~~~~~a~~~~G~~~~  182 (546)
T 2jbv_A          167 GVALLDACEQAGIPRA  182 (546)
T ss_dssp             HHHHHHHHHHTTCCBC
T ss_pred             HHHHHHHHHHCCCCcc
Confidence            9999999999999876

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=99.95  E-value=6.8e-29  Score=218.86  Aligned_cols=161  Identities=16%  Similarity=0.007  Sum_probs=122.1

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCCCCCCCCC---Ccccc-cCCCCCCccccCCCCCc-------
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPSFWSNIPL---TSPIL-QRSEHDWQYETAPQANS-------   70 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~~~~~~p~---~~~~~-~~~~~~w~~~~~p~~~~-------   70 (177)
                      ...+||+||||+|++|+++|.||++.+ +|+|||+|.....  ..|.   +.... ....++|.|.++||...       
T Consensus         8 ~~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~~--~~p~~~~~~~~~~~~~~~~w~~~~~pq~~~~~~~~~~   85 (507)
T 1coy_A            8 DGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDT--PGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGI   85 (507)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCS--CCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSC
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCC--CCCcccccccccccccccccccccccccccccccccc
Confidence            355799999999999999999999988 9999999986432  1222   11111 13468899999887210       


Q ss_pred             ----CCCC------CCCeeecccceeecCCcccccccccCCChhHHhhhCCCCCCchHH-HHHHHHhcCCCCCCCCCCcc
Q psy2463          71 ----SGGL------KNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVS-KVLGHIIGYDRKTNVGNNVE  139 (177)
Q Consensus        71 ----~~~~------~~~~~~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~~~W~~~~l~-pyf~~~E~~~~~~~~~~~g~  139 (177)
                          ....      +++.+.+++||+|||||+||+|+|+|+++.|||.|.++|.|++|+ |||+|+|++.......    
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~~~w~~~~l~~pyy~~~E~~~~~~~~~----  161 (507)
T 1coy_A           86 NKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNID----  161 (507)
T ss_dssp             CCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCC----
T ss_pred             ccccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhCCccchhcchhHHHHHHHHHhCCCCCC----
Confidence                0113      567889999999999999999999999999999998889999999 9999999987653111    


Q ss_pred             ccceeecCCCCCCchhHHHHHHHHHcCC-----cCCCc
Q psy2463         140 DFPVRVSLSDTATPGLTSTIPAIVKSKH-----YLPKL  172 (177)
Q Consensus       140 ~Gpv~v~~~~~~~p~~~~~~~a~~~~G~-----~~~~~  172 (177)
                       ....  .+....|+.+.|.++++++|+     +.+.+
T Consensus       162 -~~~~--~~~~~~~~~~~~~~a~~~~G~~~~~~p~~~d  196 (507)
T 1coy_A          162 -QAWF--ESTEWYKFARTGRKTAQRSGFTTAFVPNVYD  196 (507)
T ss_dssp             -HHHH--HHCGGGHHHHHHHHHHHHTTCCEEECCBSBC
T ss_pred             -Cccc--cccccchHHHHHHHHHHHcCCCCccCCcccc
Confidence             1100  011135789999999999999     76654

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=99.95  E-value=6.6e-28  Score=212.29  Aligned_cols=158  Identities=15%  Similarity=0.025  Sum_probs=119.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC---CCCCCCCCcccccCCCCCCccccCCCCC-----------
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS---FWSNIPLTSPILQRSEHDWQYETAPQAN-----------   69 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~---~~~~~p~~~~~~~~~~~~w~~~~~p~~~-----------   69 (177)
                      ..||+||||+|++|+++|.+|++.+ +|+|||+|....   +...++... ......++|.+.+.||..           
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~t~p~~~~~~l~~~~~~~   82 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGM-LNPDKRSSWFKNRTEAPLGSFLWLDVVNR   82 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCT-TSCCGGGSBSCSBCCCCTTCHHHHGGGCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCCcccccccc-cccCccccccccccccccccccccccccc
Confidence            4699999999999999999999999 999999998543   122232211 112335789999888720           


Q ss_pred             -cCCCC------CCCeeecccceeecCCcccccccccCCChhHHhhhCCCCCCchHH-HHHHHHhcCCCCCCCC--CCcc
Q psy2463          70 -SSGGL------KNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVS-KVLGHIIGYDRKTNVG--NNVE  139 (177)
Q Consensus        70 -~~~~~------~~~~~~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~~~W~~~~l~-pyf~~~E~~~~~~~~~--~~g~  139 (177)
                       .....      +++.+.+++||+|||||+||+|+|+|+++.|||.|.++|.|++|+ |||+|+|++.......  .| .
T Consensus        83 ~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~w~~~~l~~pyy~~~E~~~~~~~~~~~~~-~  161 (504)
T 1n4w_A           83 NIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWF-E  161 (504)
T ss_dssp             BCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHH-H
T ss_pred             cccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhccccchhhhhhHHHHHHHHHhCCCCCCcccc-c
Confidence             00112      567889999999999999999999999999999998889999999 9999999976642211  11 1


Q ss_pred             ccceeecCCCCCCchhHHHHHHHHHcCC-----cCCCc
Q psy2463         140 DFPVRVSLSDTATPGLTSTIPAIVKSKH-----YLPKL  172 (177)
Q Consensus       140 ~Gpv~v~~~~~~~p~~~~~~~a~~~~G~-----~~~~~  172 (177)
                      .+|        ..|..+.|.++++++|+     +.+.+
T Consensus       162 ~~~--------~~p~~~~~~~a~~~~G~~~~~~p~~~d  191 (504)
T 1n4w_A          162 DTE--------WYKFARVSREQAGKAGLGTVFVPNVYD  191 (504)
T ss_dssp             HCG--------GGHHHHHHHHHHHHTTCCEEECCBSBC
T ss_pred             CCC--------cchHHHHHHHHHHHcCCCCccCCcccc
Confidence            222        24789999999999999     66544

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=99.93  E-value=3.4e-27  Score=209.40  Aligned_cols=142  Identities=23%  Similarity=0.152  Sum_probs=108.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC--CCCCCCCCcccccCCCCCCccccCCCCCcCCCCCCCeee
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS--FWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSF   80 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~--~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~   80 (177)
                      ..+|||||||||+|||++|.||+| + +|||||+|+...  +....|..+..... ..+| |.+.||..    ..++.+.
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~-~~~~-~~t~~q~~----~~~~~~~   96 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPTAYPNVLTADGFVYNLQ-QEDD-GKTPVERF----VSEDGID   96 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGGGSGGGGBGGGHHHHHH-SCCC-SSSSEEEE----ECTTSCE
T ss_pred             cCcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcCCCcceecchhHhhhcc-CCCc-CcCCCccc----cCCCcce
Confidence            356999999999999999999999 9 999999998642  22222322111111 1234 56777765    4567788


Q ss_pred             cccceeecCCcccccccccCCChhHHhhhCCCCCCchHHHHHHHHhcCCCCCCCCCCccccceeecCCCCCCchhHHHHH
Q psy2463          81 WPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATPGLTSTIP  160 (177)
Q Consensus        81 ~~~g~~lGGsS~in~~~~~R~~~~dfd~w~~~W~~~~l~pyf~~~E~~~~~~~~~~~g~~Gpv~v~~~~~~~p~~~~~~~  160 (177)
                      +++|++|||||+||+|+|.|+++.||+.+..+|+|++++|||+++|+.....                ....|....|.+
T Consensus        97 ~~rg~~lGGsS~in~~~~~R~~~~d~~~~G~~W~~~~~~p~~~~~e~~~~~~----------------~~~~~~~~~~~~  160 (536)
T 1ju2_A           97 NVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYK----------------PNSQSWQSVTKT  160 (536)
T ss_dssp             EEEECBTTGGGGTSCCEECBCCTTSSTTSSSCCCHHHHHHHHHHHHHHHCBC----------------CCCCHHHHHHHH
T ss_pred             eecceeccccccccCeEEEeCCHHHHhhccCCCChHHHHHHHHhhhcccCCC----------------CCCCcHHHHHHH
Confidence            9999999999999999999999999987322399999999999999864321                123577899999


Q ss_pred             HHHHcCCc
Q psy2463         161 AIVKSKHY  168 (177)
Q Consensus       161 a~~~~G~~  168 (177)
                      +++++|+.
T Consensus       161 a~~~~G~~  168 (536)
T 1ju2_A          161 AFLEAGVH  168 (536)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHcCCC
Confidence            99999984

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=99.89  E-value=3.5e-23  Score=183.33  Aligned_cols=155  Identities=17%  Similarity=0.071  Sum_probs=103.6

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCCCC--CCC-CCCcccccCCCCCCc-----cccCCCCCcC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPSFW--SNI-PLTSPILQRSEHDWQ-----YETAPQANSS   71 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~~~--~~~-p~~~~~~~~~~~~w~-----~~~~p~~~~~   71 (177)
                      +|.+..||+||||+|++|+++|.||++++ +|||||+|......  ... +.+........+++.     ....+...  
T Consensus         2 ~~~~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--   79 (546)
T 1kdg_A            2 TVSATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPF--   79 (546)
T ss_dssp             ----CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCT--
T ss_pred             CCCCCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccccccccccccceeeccchhHHHhhcCCCcc--
Confidence            45667899999999999999999999999 99999999854310  000 000000000000000     00011100  


Q ss_pred             CCCCCCeeecccceeecCCcccccccccCCChhHHhh---hCCCCCCchHHHHHHHHhcCCCCCCCCCCccccceeecCC
Q psy2463          72 GGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEA---WGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLS  148 (177)
Q Consensus        72 ~~~~~~~~~~~~g~~lGGsS~in~~~~~R~~~~dfd~---w~~~W~~~~l~pyf~~~E~~~~~~~~~~~g~~Gpv~v~~~  148 (177)
                        .....+.+.+|++|||||+||+|+++|+.+.|||.   |..+|+|++  |||+|+|+..+..  ..+..+|+.     
T Consensus        80 --~~~~~~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W~~~w~~~~--p~~~k~e~~~~~~--~~~~~~g~~-----  148 (546)
T 1kdg_A           80 --WWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHA--PYTSKLSSRLPST--DHPSTDGQR-----  148 (546)
T ss_dssp             --TBCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCH--HHHHHHHHHSCCB--SCCSTTSCC-----
T ss_pred             --ccccccccccceeecccccccceEEecCChHHhcCcccCccccCccc--HHHHHHHhcCCCC--ccCCCCCCc-----
Confidence              11123567899999999999999999999999997   977899999  9999999865432  123345542     


Q ss_pred             CCCCchhHHHHHHHHHcCCcC
Q psy2463         149 DTATPGLTSTIPAIVKSKHYL  169 (177)
Q Consensus       149 ~~~~p~~~~~~~a~~~~G~~~  169 (177)
                       +..+....|.++++++|+..
T Consensus       149 -~~~~~~~~~~~a~~~~G~~~  168 (546)
T 1kdg_A          149 -YLEQSFNVVSQLLKGQGYNQ  168 (546)
T ss_dssp             -CSCHHHHHHHHHHHTTTCEE
T ss_pred             -cCCHHHHHHHHHHHHCCCCc
Confidence             34578899999999999854

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.84  E-value=2.4e-09  Score=81.56  Aligned_cols=34  Identities=26%  Similarity=0.260  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ++||+|||||+||+++|..|++.| +|+|||+...
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~   36 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG   36 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            489999999999999999999999 9999999754

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.75  E-value=5.8e-09  Score=86.29  Aligned_cols=34  Identities=24%  Similarity=0.176  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +|||||||||+||+++|..|++.| +|+|||+.+.
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~   38 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE   38 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            599999999999999999999999 9999999764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.52  E-value=7.8e-08  Score=78.12  Aligned_cols=34  Identities=32%  Similarity=0.269  Sum_probs=32.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~   39 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI   39 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            4699999999999999999999999 999999864

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.50  E-value=1e-07  Score=81.09  Aligned_cols=40  Identities=33%  Similarity=0.298  Sum_probs=35.3

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      |.+...+|+||||+|.+|+.+|.+|++.|  +|+|||++...
T Consensus         1 M~~~~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            1 MAVTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP   42 (438)
T ss_dssp             -CCCTTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            56667799999999999999999999998  79999998753

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.50  E-value=4.8e-07  Score=81.47  Aligned_cols=36  Identities=28%  Similarity=0.403  Sum_probs=32.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..||+||||+|++|+.+|..|++.| +|+|||++...
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~   81 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   81 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCC
Confidence            4699999999999999999999999 99999998754

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.46  E-value=5.9e-08  Score=79.91  Aligned_cols=37  Identities=32%  Similarity=0.309  Sum_probs=32.4

Q ss_pred             CccccEEEECCChHHHHHHHHHHh--CC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSL--HH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~--~g-~VLvLEaG~~~   40 (177)
                      ...+|+||||+|+||+++|.+|++  .| +|+|+|++...
T Consensus        63 ~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           63 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            457899999999999999999986  37 99999998643

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.46  E-value=1.2e-07  Score=77.89  Aligned_cols=34  Identities=29%  Similarity=0.294  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+|+||||+|.+|+.+|.+|++.| +|+|||++..
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~   38 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEG   38 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            599999999999999999999999 9999999853

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.46  E-value=1.2e-07  Score=76.73  Aligned_cols=34  Identities=21%  Similarity=0.127  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~   37 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM   37 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            4599999999999999999999999 999999864

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.46  E-value=1e-07  Score=82.17  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=33.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-C-cEEEEecCCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH-H-TVLLIEAGDFPS   41 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG~~~~   41 (177)
                      ..+||||||||.+|+++|.+|++. | +|+|||+....-
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~G   47 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPG   47 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCc
Confidence            469999999999999999999984 8 999999976643

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.45  E-value=1.4e-07  Score=76.73  Aligned_cols=34  Identities=21%  Similarity=0.223  Sum_probs=31.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +.||+||||+|+||..+|.+|++.+ +|+|+|++.
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~   39 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT   39 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3599999999999999999999999 999999874

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.44  E-value=1.5e-07  Score=78.21  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=33.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...+|+||||+|.+|+.+|.+|++.| +|+|||++..
T Consensus        15 ~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~   51 (382)
T 1ryi_A           15 KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTM   51 (382)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            45699999999999999999999999 9999999753

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.44  E-value=1.6e-07  Score=78.83  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+|+||||+|.+|+.+|..|++.| +|+|||++..
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~   38 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTF   38 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            589999999999999999999999 9999999864

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.42  E-value=1.7e-07  Score=82.00  Aligned_cols=37  Identities=22%  Similarity=0.187  Sum_probs=33.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..++|+||||+|.+|+.+|.+|++.| +|+|||++...
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~   76 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGW   76 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            35699999999999999999999999 99999998754

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.40  E-value=2.4e-07  Score=78.17  Aligned_cols=37  Identities=22%  Similarity=0.078  Sum_probs=32.8

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ...+|+||||+|++|+++|..|++.| +|+|||+....
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~   58 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI   58 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            44699999999999999999999999 99999998653

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.39  E-value=1.9e-07  Score=80.14  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=32.1

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ||....+|+||||+|.+|+++|.+|++.| +|+|||+....
T Consensus        11 ~~~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~   51 (478)
T 2ivd_A           11 MPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   51 (478)
T ss_dssp             ------CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence            78888999999999999999999999999 99999997653

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.39  E-value=2.9e-07  Score=79.41  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=33.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      ..+|+||||+|.+|+++|.+|++.| +|+|||+....-
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~G   47 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   47 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            4699999999999999999999999 999999987643

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.37  E-value=2.2e-07  Score=78.58  Aligned_cols=33  Identities=33%  Similarity=0.403  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +|+||||+|.+|+++|.+|++.| +|+|||+...
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~   35 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGER   35 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            79999999999999999999999 9999999654

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.36  E-value=2.8e-07  Score=78.32  Aligned_cols=39  Identities=26%  Similarity=0.306  Sum_probs=34.3

Q ss_pred             CCCccccEEEECCChHHHHHHHHHHhC-C-cEEEEecCCCC
Q psy2463           2 PTEYLSLENIVGAGTAGCVLANRLSLH-H-TVLLIEAGDFP   40 (177)
Q Consensus         2 ~~~~~~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG~~~   40 (177)
                      ++...+|+||||+|.+|+++|.+|++. | +|+|||+....
T Consensus         3 ~m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            3 PMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             -CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             cccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            345579999999999999999999998 8 99999998754

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.34  E-value=3.8e-07  Score=76.87  Aligned_cols=39  Identities=23%  Similarity=0.205  Sum_probs=33.8

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      |.+...+|+||||+|++|+++|..|++.| +|+|||+.+.
T Consensus        21 M~~~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   60 (398)
T 2xdo_A           21 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND   60 (398)
T ss_dssp             --CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred             ccccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            45555689999999999999999999999 9999999764

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.33  E-value=3.5e-07  Score=77.05  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=32.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .++|+||||+|++|+.+|..|++.| +|+|||+..
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3599999999999999999999999 999999985

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.33  E-value=4.3e-07  Score=75.53  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=32.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..+|+||||+|.+|+.+|.+|++.| +|+|||++.
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4699999999999999999999999 999999984

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.33  E-value=5.1e-07  Score=74.89  Aligned_cols=35  Identities=17%  Similarity=0.138  Sum_probs=32.4

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..++|+||||+|.+|+.+|.+|++.| +|+|||+..
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            44699999999999999999999999 999999975

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.31  E-value=4.3e-07  Score=75.50  Aligned_cols=34  Identities=29%  Similarity=0.291  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ++|+||||+|.+|+.+|.+|++.| +|+|||++..
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~   37 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            589999999999999999999999 9999999864

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.31  E-value=3.5e-07  Score=75.67  Aligned_cols=34  Identities=21%  Similarity=0.155  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ++|+||||+|.+|+.+|.+|++.| +|+|||++..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            489999999999999999999999 9999999864

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.30  E-value=4.3e-07  Score=76.57  Aligned_cols=34  Identities=29%  Similarity=0.305  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +|+||||||.+|+++|.+|++.| +|+|||+....
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT   35 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence            48999999999999999999999 99999998653

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.29  E-value=5.1e-07  Score=80.18  Aligned_cols=34  Identities=21%  Similarity=0.205  Sum_probs=32.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..||+||||||.+|+.+|..|++.| +|+|||++.
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d   51 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMND   51 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            4699999999999999999999999 999999984

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.28  E-value=6.5e-07  Score=75.14  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=33.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ...+|+||||+|++|+.+|..|++.| +|+|||+.+..
T Consensus         4 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            4 DNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            34699999999999999999999999 99999998643

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.27  E-value=4.1e-07  Score=75.14  Aligned_cols=36  Identities=31%  Similarity=0.383  Sum_probs=32.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ...+|+||||+|.+|+.+|.+|+ .| +|+|||++...
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~   43 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP   43 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred             CCcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence            34699999999999999999999 59 99999998643

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.27  E-value=3.4e-07  Score=74.21  Aligned_cols=36  Identities=33%  Similarity=0.360  Sum_probs=32.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-C-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH-H-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG~~~   40 (177)
                      ..+|+||||+|++|+.+|..|++. + +|+|||+....
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~   75 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   75 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence            468999999999999999999997 8 99999998654

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.27  E-value=6.3e-07  Score=77.06  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=32.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...+|+||||+|++|+.+|..|++.| +|+|||+.+.
T Consensus        24 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~   60 (447)
T 2i0z_A           24 AMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   60 (447)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            34589999999999999999999999 9999999764

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.26  E-value=6.3e-07  Score=76.95  Aligned_cols=35  Identities=29%  Similarity=0.267  Sum_probs=31.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+|+||||+|++|+.+|..|++.| +|+|||+...
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~   61 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA   61 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            4689999999999999999999999 9999999875

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.25  E-value=4.7e-07  Score=77.80  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+|+||||+|++|+++|..|++.| +|+|||+.+.
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~   40 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW   40 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            4699999999999999999999999 9999999764

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.25  E-value=7.3e-07  Score=78.28  Aligned_cols=38  Identities=21%  Similarity=0.318  Sum_probs=34.4

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      |++...||+||||+|+||..+|.+|++.| +|+|+|+.+
T Consensus        27 ~~~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           27 LPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             CCSSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             cCcCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            45566899999999999999999999999 999999854

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.24  E-value=8.1e-07  Score=78.48  Aligned_cols=40  Identities=28%  Similarity=0.284  Sum_probs=34.9

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      |....++||||||+|++|+++|..|++.| +|+|||+.+..
T Consensus        21 M~~~~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~   61 (549)
T 2r0c_A           21 MNAPIETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT   61 (549)
T ss_dssp             -CCCEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC
T ss_pred             cCCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            45556799999999999999999999999 99999998643

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.24  E-value=8.5e-07  Score=77.63  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=33.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..||+||||+|.+|+++|.+|++.| +|+|||++...
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~   55 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYY   55 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            4699999999999999999999999 99999998764

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.23  E-value=1e-06  Score=69.30  Aligned_cols=33  Identities=30%  Similarity=0.187  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .||+||||+|++|+.+|..|++.+ +|+|||++.
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            589999999999999999999999 999999973

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.22  E-value=7.7e-07  Score=78.74  Aligned_cols=35  Identities=34%  Similarity=0.439  Sum_probs=32.6

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..++|+||||+|.||+.+|.+|++ | +|+|||++..
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~   41 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV   41 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence            457999999999999999999999 9 9999999864

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.22  E-value=8.3e-07  Score=74.65  Aligned_cols=35  Identities=37%  Similarity=0.395  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .+|++|||+|.+|+++|.+|++.| +|+|||++...
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            379999999999999999999999 99999998653

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.22  E-value=1e-06  Score=79.86  Aligned_cols=35  Identities=23%  Similarity=0.134  Sum_probs=32.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+|+||||||.+|+.+|.+|++.| +|+|||++..
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~  298 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQ  298 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence            3589999999999999999999999 9999999753

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.22  E-value=1.2e-06  Score=70.43  Aligned_cols=33  Identities=24%  Similarity=0.002  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ..+|+||||+|+||+.+|.+|++.+ +|+|+|+.
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   47 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET   47 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            3589999999999999999999999 99999995

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.22  E-value=9e-07  Score=75.44  Aligned_cols=34  Identities=32%  Similarity=0.421  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+|+||||+|++|+.+|.+|++.| +|+|||++..
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~   38 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            599999999999999999999999 9999999874

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.22  E-value=8.6e-07  Score=75.01  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      |+||||||.+|+++|.+|++.| +|+|||+....
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI   35 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            8999999999999999999999 99999997653

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.22  E-value=6.7e-07  Score=77.16  Aligned_cols=32  Identities=41%  Similarity=0.528  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +|||||||.+|+++|.+|+++| +|+|||+...
T Consensus         3 ~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~   35 (501)
T 4dgk_A            3 PTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK   35 (501)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEECCC--
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC
Confidence            6999999999999999999999 9999999654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.21  E-value=1.2e-06  Score=73.92  Aligned_cols=40  Identities=28%  Similarity=0.245  Sum_probs=34.6

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      |.....+|+||||+|.+|+++|.+|++.|  +|+|||+....
T Consensus         1 M~~~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            1 MSISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             -CCCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            55556799999999999999999999987  89999997654

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.21  E-value=9.1e-07  Score=78.72  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=32.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...+|+||||+|++|+.+|.+|++.| +|+|||++..
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~  141 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE  141 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCc
Confidence            34589999999999999999999999 9999999964

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.21  E-value=1e-06  Score=78.74  Aligned_cols=35  Identities=26%  Similarity=0.107  Sum_probs=32.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|+||||+|.||+.+|.+|++.| +|+|||++..
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~   41 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFP   41 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4699999999999999999999999 9999999854

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.21  E-value=8.9e-07  Score=77.40  Aligned_cols=35  Identities=26%  Similarity=0.366  Sum_probs=32.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..++|+||||+|++|+.+|..|++.| +|+|||+..
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            34699999999999999999999999 999999986

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.20  E-value=1.2e-06  Score=76.08  Aligned_cols=33  Identities=18%  Similarity=0.134  Sum_probs=31.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ..||+||||+|+||+.+|.+|++.| +|+|||++
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~   58 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY   58 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            4699999999999999999999999 99999994

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.20  E-value=1.1e-06  Score=76.04  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=32.7

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ....||+||||+|+||+.+|.+|++.| +|+|+|+..
T Consensus        17 ~~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           17 AVASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            345799999999999999999999999 999999764

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.20  E-value=9.3e-07  Score=78.88  Aligned_cols=36  Identities=36%  Similarity=0.316  Sum_probs=32.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC------C-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH------H-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~------g-~VLvLEaG~~~   40 (177)
                      .++|+||||+|+||+++|.+|++.      | +|+|||++...
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~   76 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   76 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             cCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCC
Confidence            358999999999999999999998      9 99999998653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.20  E-value=9.2e-07  Score=76.33  Aligned_cols=34  Identities=26%  Similarity=0.182  Sum_probs=32.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+||+||||+|+||+.+|.+|++.| +|+|+|++.
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~   36 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            4699999999999999999999999 999999986

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.20  E-value=1.1e-06  Score=77.80  Aligned_cols=36  Identities=28%  Similarity=0.188  Sum_probs=33.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|+||||+|.+|+.+|..|++.| +|+|||+.+..
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~  161 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI  161 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            3689999999999999999999999 99999998753

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.19  E-value=1.4e-06  Score=76.19  Aligned_cols=38  Identities=32%  Similarity=0.306  Sum_probs=34.0

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +..++||||||+|++|+++|..|++.| +|+|||+.+..
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~   46 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVER   46 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            456799999999999999999999999 99999997643

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.19  E-value=9.8e-07  Score=74.73  Aligned_cols=35  Identities=29%  Similarity=0.326  Sum_probs=32.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      ..+|+||||+|.+|+.+|..|++.  | +|+|||++..
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~   72 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL   72 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            359999999999999999999999  9 9999999753

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.18  E-value=1.3e-06  Score=78.82  Aligned_cols=34  Identities=26%  Similarity=0.253  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+||||||||.+|+.+|.+|++.| +|+|||+...
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~  306 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCADEA  306 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            489999999999999999999999 9999999643

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.18  E-value=1.1e-06  Score=79.79  Aligned_cols=36  Identities=14%  Similarity=0.109  Sum_probs=33.3

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..++|+||||+|.||+.+|.+|++.| +|+|||+...
T Consensus         3 ~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~   39 (660)
T 2bs2_A            3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPV   39 (660)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCG
T ss_pred             cccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            45799999999999999999999999 9999999764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.18  E-value=1.5e-06  Score=70.78  Aligned_cols=34  Identities=26%  Similarity=0.266  Sum_probs=32.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ...+|+||||+|+||+.+|.+|++.+ +|+|||+.
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   40 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG   40 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC
Confidence            45699999999999999999999999 99999998

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.18  E-value=1.2e-06  Score=73.18  Aligned_cols=34  Identities=32%  Similarity=0.271  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHh-CC--cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSL-HH--TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~-~g--~VLvLEaG~   38 (177)
                      .++|+||||+|.+|+.+|.+|++ .|  +|+|||++.
T Consensus        20 ~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            46899999999999999999999 77  999999986

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.17  E-value=1.1e-06  Score=73.45  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ++|+||||+|++|+++|..|++.| +|+|||+...
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            489999999999999999999999 9999998763

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.17  E-value=1.4e-06  Score=77.64  Aligned_cols=36  Identities=28%  Similarity=0.311  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++||||||+|++|+++|..|++.| +|+|||+....
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~   84 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEP   84 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            4689999999999999999999999 99999997653

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.17  E-value=8.7e-07  Score=71.71  Aligned_cols=36  Identities=22%  Similarity=0.197  Sum_probs=33.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...+|+||||+|+||+.+|.+|++.+ +|+|||+.+.
T Consensus         5 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   41 (332)
T 3lzw_A            5 TKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQ   41 (332)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            34689999999999999999999999 9999999764

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.17  E-value=1.6e-06  Score=75.10  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=31.4

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ...||+||||+|+||+.+|.+|++.| +|+|||++
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            35799999999999999999999999 99999954

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.16  E-value=1.1e-06  Score=79.58  Aligned_cols=34  Identities=24%  Similarity=0.104  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..||+||||||.||+.+|..|++.| +|+|||.+.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            4699999999999999999999999 999999874

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.16  E-value=1.6e-06  Score=74.16  Aligned_cols=36  Identities=39%  Similarity=0.358  Sum_probs=33.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+|++|||+|.+|+++|.+|++.| +|+|||+....
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            4689999999999999999999999 99999997653

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.16  E-value=1.4e-06  Score=73.46  Aligned_cols=36  Identities=36%  Similarity=0.375  Sum_probs=32.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      .+||+||||+|++|+.+|.+|++.  | +|+|||++...
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~  116 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP  116 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Confidence            368999999999999999999997  7 99999998653

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.16  E-value=1.5e-06  Score=74.85  Aligned_cols=33  Identities=15%  Similarity=0.107  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ..||+||||+|++|+.+|.+|++.| +|+|||++
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~   37 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF   37 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            3599999999999999999999999 99999994

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.16  E-value=1.6e-06  Score=75.77  Aligned_cols=38  Identities=32%  Similarity=0.331  Sum_probs=33.3

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ++.++||||||+|++|+++|..|++.| +|+|||+.+..
T Consensus         9 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~   47 (499)
T 2qa2_A            9 HRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQR   47 (499)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            456799999999999999999999999 99999997643

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.15  E-value=1.6e-06  Score=75.92  Aligned_cols=36  Identities=28%  Similarity=0.139  Sum_probs=33.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|+||||+|++|+++|..|++.| +|+|||+....
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~   40 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGL   40 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            4699999999999999999999999 99999998653

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.15  E-value=1.1e-06  Score=77.77  Aligned_cols=37  Identities=24%  Similarity=0.317  Sum_probs=33.6

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..++|+||||+|.+|+.+|..|++.| +|+|||+....
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~  156 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS  156 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            35689999999999999999999999 99999998743

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.15  E-value=1.6e-06  Score=75.64  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+|+||||+|.+|+.+|..|++.| +|+|||++.
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~   36 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD   36 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            589999999999999999999999 999999975

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.14  E-value=1.8e-06  Score=72.58  Aligned_cols=35  Identities=20%  Similarity=0.063  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+|+||||+|++|+++|..|++.| +|+|||+.+.
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            3589999999999999999999999 9999999865

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.14  E-value=1.6e-06  Score=77.01  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=31.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ++||+||||+|+||.++|.|+|+.| +|+|||...
T Consensus        41 ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~   75 (542)
T 4b1b_A           41 YDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVK   75 (542)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            4699999999999999999999999 999999754

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.14  E-value=1.9e-06  Score=72.86  Aligned_cols=34  Identities=29%  Similarity=0.166  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-c-EEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-T-VLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~~   39 (177)
                      .+|+||||+|++|+++|..|++.| + |+|||+...
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   39 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   39 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence            489999999999999999999999 9 999999764

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.14  E-value=1.7e-06  Score=77.01  Aligned_cols=34  Identities=26%  Similarity=0.179  Sum_probs=32.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..+|+||||+|.+|+.+|..|++.| +|+|||++.
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3699999999999999999999999 999999985

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.13  E-value=1.8e-06  Score=72.07  Aligned_cols=35  Identities=26%  Similarity=0.196  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .+|+||||+|++|+.+|..|++.| +|+|||+....
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~   46 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL   46 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            489999999999999999999999 99999998654

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.13  E-value=1.7e-06  Score=75.34  Aligned_cols=36  Identities=28%  Similarity=0.261  Sum_probs=32.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+|+||||||.+|+++|.+|++.| +|+|||+....
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3589999999999999999999999 99999997653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.13  E-value=1.7e-06  Score=70.17  Aligned_cols=35  Identities=23%  Similarity=0.183  Sum_probs=31.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +..+|+||||+|++|+.+|.+|++.+ +|+|||+.+
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~   55 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMM   55 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            34699999999999999999999999 999999954

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.12  E-value=2.2e-06  Score=73.91  Aligned_cols=36  Identities=28%  Similarity=0.255  Sum_probs=33.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+|+||||+|.+|+++|.+|++.| +|+|||+....
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~   46 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP   46 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            4689999999999999999999999 99999998653

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.11  E-value=2e-06  Score=77.53  Aligned_cols=35  Identities=26%  Similarity=-0.012  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|+||||+|.||+.+|..|++.| +|+|||+...
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~   52 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFP   52 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCG
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            4689999999999999999999999 9999999753

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.11  E-value=1.9e-06  Score=74.76  Aligned_cols=35  Identities=14%  Similarity=0.087  Sum_probs=31.8

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.+||+||||+|+||..+|.+|++.| +|+|||+.
T Consensus         3 ~~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~   38 (488)
T 3dgz_A            3 GQQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYV   38 (488)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEec
Confidence            356799999999999999999999999 99999973

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.10  E-value=2.4e-06  Score=74.15  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .||+||||+|+||+.+|.+|++.| +|+|+|+...
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   59 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRST   59 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            589999999999999999999999 9999998643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.10  E-value=2.1e-06  Score=74.06  Aligned_cols=33  Identities=30%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .||+||||+|+||+.+|.+|++.| +|+|||+..
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~   37 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKG   37 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            599999999999999999999999 999999654

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.10  E-value=2.9e-06  Score=72.78  Aligned_cols=37  Identities=19%  Similarity=0.362  Sum_probs=33.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ...+|+||||+|.+|+++|.+|++.| +|+|||+....
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~   41 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYY   41 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCc
Confidence            34589999999999999999999999 99999998654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.10  E-value=2.2e-06  Score=72.91  Aligned_cols=36  Identities=36%  Similarity=0.337  Sum_probs=32.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+|+||||+|.+|+++|.+|++.| +|+|||+....
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   40 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV   40 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            3689999999999999999999999 99999997653

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.09  E-value=2.7e-06  Score=67.75  Aligned_cols=32  Identities=31%  Similarity=0.402  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +|++|||+|++|+.+|.+|++.+ +|+|+|++.
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   35 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGE   35 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            89999999999999999999999 999999865

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.09  E-value=1.9e-06  Score=78.20  Aligned_cols=35  Identities=20%  Similarity=0.252  Sum_probs=32.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC------C-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH------H-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~------g-~VLvLEaG~~   39 (177)
                      .++|+||||||.||+.+|.+|++.      | +|+|||++..
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~   62 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL   62 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence            469999999999999999999997      8 9999999753

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.09  E-value=2.4e-06  Score=74.47  Aligned_cols=34  Identities=35%  Similarity=0.391  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..||+||||+|+||..+|.+|++.| +|+|+|++.
T Consensus         7 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            7 INVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            3599999999999999999999999 999999875

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.09  E-value=2.7e-06  Score=69.07  Aligned_cols=33  Identities=27%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ..+|+||||+|++|+.+|.+|++.+ +|+|||+.
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   48 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA   48 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence            3589999999999999999999999 99999995

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.08  E-value=2e-06  Score=73.62  Aligned_cols=33  Identities=36%  Similarity=0.342  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+|+||||+|++|+++|..|++.| +|+|||+..
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            479999999999999999999999 999999876

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.08  E-value=2.5e-06  Score=76.34  Aligned_cols=34  Identities=32%  Similarity=0.373  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+|+||||||++|+.+|..|++.| +|+|||+...
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~   57 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAF   57 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCC
Confidence            589999999999999999999999 9999999853

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.08  E-value=3.3e-06  Score=63.23  Aligned_cols=33  Identities=27%  Similarity=0.284  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ||++|||+|++|+.+|..|++.+ +|+|||+++.
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~   35 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRS   35 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            79999999999999999999999 9999999873

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.08  E-value=2.3e-06  Score=70.39  Aligned_cols=33  Identities=27%  Similarity=0.257  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHh---CC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSL---HH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~---~g-~VLvLEaG~~   39 (177)
                      +|+||||+|.+|+++|..|++   .| +|+|||++..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~   38 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD   38 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence            599999999999999999999   88 9999999753

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.07  E-value=3e-06  Score=74.44  Aligned_cols=34  Identities=35%  Similarity=0.430  Sum_probs=31.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHh---CC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSL---HH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~---~g-~VLvLEaG~   38 (177)
                      ..+|+||||||++|+.+|..|++   .| +|+|||+..
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            35899999999999999999999   89 999999964

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.06  E-value=2.9e-06  Score=76.64  Aligned_cols=34  Identities=15%  Similarity=0.016  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..||+||||||.||+.+|..|++.| +|+|||.+.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence            3599999999999999999999999 999999874

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.05  E-value=2.7e-06  Score=74.13  Aligned_cols=36  Identities=33%  Similarity=0.317  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      ..+|+||||||.+|+++|.+|++.|  +|+|||+....
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            4689999999999999999999997  99999997653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.05  E-value=3.3e-06  Score=68.69  Aligned_cols=34  Identities=15%  Similarity=0.174  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+|+||||+|++|+.+|.+|++.+ +|+|||+...
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~   37 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEAS   37 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            489999999999999999999999 9999999864

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.05  E-value=1.6e-06  Score=72.55  Aligned_cols=36  Identities=33%  Similarity=0.374  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      ..+|++|||+|++|+.+|..|++.  + +|+|+|+....
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~  102 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccc
Confidence            457999999999999999999998  8 99999997643

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.04  E-value=2.9e-06  Score=73.22  Aligned_cols=34  Identities=26%  Similarity=0.307  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+|+||||+|.+|+++|.+|++.| +|+|||+...
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~   73 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDR   73 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSB
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            389999999999999999999999 9999999754

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.04  E-value=3.1e-06  Score=76.35  Aligned_cols=35  Identities=26%  Similarity=0.291  Sum_probs=32.0

Q ss_pred             ccccEEEECCChHHHHHHHHHH---h-CC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLS---L-HH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa---~-~g-~VLvLEaG~~   39 (177)
                      .++|+||||+|.||+.+|.+|+   + .| +|+|||++..
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            4589999999999999999999   6 79 9999999864

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.04  E-value=2.5e-06  Score=72.76  Aligned_cols=33  Identities=33%  Similarity=0.393  Sum_probs=30.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      ..+|+||||+|.+|+.+|.+|++.|  +|+|||+.
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~   56 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG   56 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccC
Confidence            3589999999999999999999987  99999993

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.03  E-value=4.6e-06  Score=67.90  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+|+||||+|++|+.+|.+|++.+ +|+|+|+...
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   39 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPE   39 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            4689999999999999999999999 9999999764

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.02  E-value=4.7e-06  Score=73.51  Aligned_cols=35  Identities=34%  Similarity=0.423  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHh---CC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSL---HH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~---~g-~VLvLEaG~~   39 (177)
                      ..+||||||+|++|+++|..|++   .| +|+|||+...
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            35899999999999999999999   88 9999999653

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.02  E-value=4.2e-06  Score=69.09  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+|+||||+|++|+.+|..|++.+ +|+|||+.+.
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   48 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQ   48 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            589999999999999999999999 9999999764

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.01  E-value=4.8e-06  Score=72.47  Aligned_cols=38  Identities=32%  Similarity=0.277  Sum_probs=33.5

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      ....+|++|||+|.+|+++|.+|++.|  +|+|||+....
T Consensus         6 ~~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            6 ELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             -CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             cccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            345799999999999999999999987  99999998654

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.01  E-value=4.9e-06  Score=72.69  Aligned_cols=35  Identities=31%  Similarity=0.256  Sum_probs=32.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+|+||||||++|+.+|..|++.| +|+|||+.+.
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~  126 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIK  126 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccc
Confidence            4689999999999999999999999 9999999864

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.01  E-value=4.5e-06  Score=72.29  Aligned_cols=36  Identities=17%  Similarity=0.094  Sum_probs=32.6

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...+|+||||+|+||..+|.+|++.| +|+|||+.+.
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~   40 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            44699999999999999999999999 9999999543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.00  E-value=4.7e-06  Score=71.95  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..+|+||||+|+||..+|.+|++.+ +|+|+|++.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            4699999999999999999999999 999999973

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.00  E-value=2.7e-06  Score=73.96  Aligned_cols=32  Identities=41%  Similarity=0.559  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHHh---CC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSL---HH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~---~g-~VLvLEaG~   38 (177)
                      +|+||||||++|+++|..|++   .| +|+|||+..
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            799999999999999999999   99 999999975

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.00  E-value=4.2e-06  Score=72.26  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .+|+||||+|.+|+++|.+|++.| +|+|||+....
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   48 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   48 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence            489999999999999999999999 99999998654

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.00  E-value=4.4e-06  Score=75.54  Aligned_cols=34  Identities=32%  Similarity=0.341  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..||+||||||.||+.+|..|++.| +|+|||+..
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   54 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDL   54 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            3599999999999999999999999 999999874

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.99  E-value=4.4e-06  Score=72.55  Aligned_cols=30  Identities=30%  Similarity=0.345  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      |+||||+|+||+.+|.+|++.| +|+|||++
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            8999999999999999999999 99999998

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.99  E-value=5.2e-06  Score=71.94  Aligned_cols=34  Identities=26%  Similarity=0.279  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..+|+||||+|+||..+|.+|++.+ +|+|+|++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4699999999999999999999999 999999974

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.99  E-value=5.4e-06  Score=70.48  Aligned_cols=33  Identities=36%  Similarity=0.351  Sum_probs=31.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ..+|++|||+|.+|+++|.+|++.| +|+|||+.
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            4589999999999999999999999 99999998

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.98  E-value=4.9e-06  Score=71.53  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=31.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..+|+||||+|+||..+|.+|++.+ +|+|+|++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC
Confidence            3599999999999999999999999 999999973

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.98  E-value=5.2e-06  Score=71.25  Aligned_cols=34  Identities=26%  Similarity=0.254  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .||+||||+|+||..+|.+|++.+ +|+|+|+.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~   35 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKA   35 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCC
Confidence            389999999999999999999999 9999999853

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.98  E-value=5.6e-06  Score=74.48  Aligned_cols=36  Identities=31%  Similarity=0.350  Sum_probs=32.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHh-CC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSL-HH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~-~g-~VLvLEaG~~~   40 (177)
                      ..+||||||+|++|+++|..|++ .| +|+|||+.+..
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~   68 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP   68 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            46999999999999999999999 99 99999997643

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.98  E-value=3.9e-06  Score=68.30  Aligned_cols=32  Identities=28%  Similarity=0.191  Sum_probs=30.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      ..+|+||||+|++|+.+|..|++.+ +|+|||+
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~   39 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEG   39 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence            3589999999999999999999999 9999998

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.97  E-value=3.9e-06  Score=73.58  Aligned_cols=34  Identities=38%  Similarity=0.475  Sum_probs=31.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHh------------CC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSL------------HH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~------------~g-~VLvLEaG~   38 (177)
                      ..+||||||||+||+++|..|++            .| +|+|||+..
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            46899999999999999999999            88 999999864

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.97  E-value=6.1e-06  Score=71.93  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .||+||||+|+||..+|.+|++.+ +|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            489999999999999999999999 999999984

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.97  E-value=4.2e-06  Score=67.11  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=30.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEE-EecC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLL-IEAG   37 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLv-LEaG   37 (177)
                      ...+|++|||+|+||+.+|.+|++.+ +|+| +|+.
T Consensus         2 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~   37 (315)
T 3r9u_A            2 NAMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG   37 (315)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            34689999999999999999999999 9998 9983

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.96  E-value=3.5e-06  Score=71.52  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-------cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-------TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-------~VLvLEaG~~~   40 (177)
                      .+|+||||||.+|+++|.+|++.|       +|+|||+....
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            589999999999999999999863       89999997543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.96  E-value=6.1e-06  Score=71.06  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .||+||||+|+||..+|.+|++.| +|+|+|+.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~   36 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGA   36 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            489999999999999999999999 9999999854

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.96  E-value=5.1e-06  Score=69.55  Aligned_cols=33  Identities=30%  Similarity=0.419  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      |+||||+|++|+.+|..|++.  | +|+|||+.+..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            899999999999999999998  8 99999998654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.96  E-value=6.4e-06  Score=71.07  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=33.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...+|+||||+|+||..+|.+|++.+ +|+|||+.+.
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~   40 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNET   40 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            34699999999999999999999999 9999999863

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.95  E-value=5.6e-06  Score=66.66  Aligned_cols=31  Identities=26%  Similarity=0.143  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      +||+||||+|++|+.+|.+|++.+ +|+|||.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~   32 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE   32 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC
Confidence            489999999999999999999999 9999986

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.95  E-value=8.1e-06  Score=71.59  Aligned_cols=34  Identities=18%  Similarity=0.121  Sum_probs=32.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..+|+||||+|++|+.+|.+|++.+ +|+|||++.
T Consensus        42 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~   76 (523)
T 1mo9_A           42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   76 (523)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4599999999999999999999999 999999987

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.95  E-value=6.8e-06  Score=70.90  Aligned_cols=34  Identities=24%  Similarity=0.194  Sum_probs=31.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..+|+||||+|+||+.+|.+|++.| +|+|+|+.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~   38 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            4699999999999999999999999 999999954

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.95  E-value=7.1e-06  Score=70.63  Aligned_cols=34  Identities=26%  Similarity=0.263  Sum_probs=31.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..+|+||||+|+||+.+|.+|++.+ +|+|||++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~   37 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT   37 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            3589999999999999999999999 999999983

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.94  E-value=6.8e-06  Score=70.91  Aligned_cols=33  Identities=30%  Similarity=0.352  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+|+||||+|+||..+|.+|++.+ +|+|+|+..
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            699999999999999999999999 999999975

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.94  E-value=6.3e-06  Score=70.87  Aligned_cols=36  Identities=22%  Similarity=0.147  Sum_probs=33.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ...+|+||||+|+||..+|.+|++.+ +|+|+|+.+.
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~   40 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA   40 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            45699999999999999999999999 9999999854

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.94  E-value=7.2e-06  Score=70.22  Aligned_cols=39  Identities=31%  Similarity=0.316  Sum_probs=33.2

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC---cEEEEecCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDF   39 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~   39 (177)
                      |.+...+|++|||+|++|+++|..|++.|   +|+|+|+...
T Consensus         1 M~~~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~   42 (447)
T 2gv8_A            1 MCLPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   42 (447)
T ss_dssp             --CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCCCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCC
Confidence            55556799999999999999999999987   8999998754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.93  E-value=6e-06  Score=66.67  Aligned_cols=32  Identities=28%  Similarity=0.224  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+|++|||+|++|+.+|.+|++.+ +|+|||+.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   37 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC
Confidence            589999999999999999999999 99999964

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.93  E-value=6.3e-06  Score=71.11  Aligned_cols=37  Identities=35%  Similarity=0.326  Sum_probs=33.3

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ...+|+||||+|.+|+.+|.+|++.| +|+|||+....
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~   68 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   68 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence            34689999999999999999999999 99999997643

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.93  E-value=6.8e-06  Score=71.50  Aligned_cols=31  Identities=23%  Similarity=0.260  Sum_probs=29.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHh-CC-cEEEEe
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSL-HH-TVLLIE   35 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~-~g-~VLvLE   35 (177)
                      ..||+||||+|+||..+|.+|++ .| +|+|+|
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            46999999999999999999999 99 999999

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.92  E-value=8.4e-06  Score=71.79  Aligned_cols=35  Identities=29%  Similarity=0.167  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+|+||||+|++|+.+|.+|++.| +|+|||++..
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~   50 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   50 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            3689999999999999999999999 9999999764

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.92  E-value=7.2e-06  Score=75.73  Aligned_cols=34  Identities=26%  Similarity=0.445  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      .+|+||||+|.+|+.+|.+|++.|  +|+|||++..
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~   39 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   39 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            589999999999999999999998  7999999874

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.92  E-value=8.6e-06  Score=67.62  Aligned_cols=32  Identities=34%  Similarity=0.460  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .|+|||+|++|+++|..|++.| +|+|+|+-+.
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5899999999999999999999 9999998654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.92  E-value=8.1e-06  Score=70.06  Aligned_cols=32  Identities=34%  Similarity=0.428  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .||+||||+|+||..+|.+|++.+ +|+|+|+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            589999999999999999999999 99999997

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.92  E-value=7.2e-06  Score=70.56  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+|+||||+|+||+.+|.+|++.| +|+|+|+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            589999999999999999999999 99999997

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.90  E-value=7e-06  Score=71.41  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhC---C-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLH---H-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~---g-~VLvLEaG~   38 (177)
                      .||+||||+|+||..+|.+|++.   | +|+|||++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            48999999999999999999998   9 999999985

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.90  E-value=7.3e-06  Score=70.06  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      .|+||||||.+|+++|.+|++.|   +|+|||+....
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            69999999999999999999987   79999997543

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.90  E-value=9.9e-06  Score=68.49  Aligned_cols=35  Identities=31%  Similarity=0.392  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ++|++|||+|.+|+++|.+|++.| +|+|+|+....
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   38 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   38 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            379999999999999999999999 99999997654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.90  E-value=7.2e-06  Score=67.14  Aligned_cols=33  Identities=21%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ..+|+||||+|++|+.+|.+|++.+ +|+|||+.
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   46 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT   46 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4589999999999999999999999 99999964

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.89  E-value=1.1e-05  Score=73.00  Aligned_cols=36  Identities=17%  Similarity=0.198  Sum_probs=33.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      .|||||||+|..|+++|..||+.| +||+||+.....
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~g   44 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYG   44 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCccc
Confidence            699999999999999999999999 999999988764

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.88  E-value=8.2e-06  Score=67.21  Aligned_cols=31  Identities=16%  Similarity=0.113  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhC------C-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH------H-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~------g-~VLvLEaG~   38 (177)
                      |+||||+|.+|+.+|.+|++.      + +|+|||++.
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            899999999999999999997      3 999999985

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.88  E-value=8.7e-06  Score=70.98  Aligned_cols=33  Identities=15%  Similarity=0.131  Sum_probs=30.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHh-CC-cEEEEec
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSL-HH-TVLLIEA   36 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~-~g-~VLvLEa   36 (177)
                      +..||+||||+|+||..+|.+|++ .| +|+|+|+
T Consensus         5 ~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            5 SKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            346999999999999999999999 99 9999993

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.86  E-value=9.8e-06  Score=69.79  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=31.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ...+|+||||+|+||..+|.+|++.+ +|+|+|++
T Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~   37 (458)
T 1lvl_A            3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (458)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC
Confidence            34699999999999999999999999 99999994

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.83  E-value=1.3e-05  Score=70.87  Aligned_cols=35  Identities=31%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+|+||||+|++|+.+|.+|++.+ +|+|||++..
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~   43 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGED   43 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            4689999999999999999999999 9999999864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.82  E-value=1.4e-05  Score=65.70  Aligned_cols=33  Identities=33%  Similarity=0.444  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      .+|+||||+|++|+.+|.+|++.+  +|+|||+..
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            589999999999999999999988  799999985

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.81  E-value=1.5e-05  Score=68.61  Aligned_cols=33  Identities=36%  Similarity=0.263  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +|+||||+|.||+.+|..|++.| +|+|+|..+.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            69999999999999999999999 9999998774

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.81  E-value=1.5e-05  Score=64.15  Aligned_cols=31  Identities=26%  Similarity=0.274  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      ||++|||+|++|+.+|..|++.+  +|+|||+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~   34 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG   34 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC
Confidence            79999999999999999999987  89999985

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.81  E-value=1.3e-05  Score=71.80  Aligned_cols=35  Identities=29%  Similarity=0.240  Sum_probs=31.6

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH---TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~   38 (177)
                      ..++|+||||+|.+|+.+|..|++.|   +|+|||+..
T Consensus         3 ~~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~   40 (602)
T 1kf6_A            3 TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (602)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            34689999999999999999999965   899999975

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.80  E-value=2.1e-05  Score=66.58  Aligned_cols=37  Identities=30%  Similarity=0.186  Sum_probs=33.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-c--EEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-T--VLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~--VLvLEaG~~~   40 (177)
                      ...+|+||||+|+||+.+|.+|++.+ +  |+|||+.+..
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   46 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEI   46 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSC
T ss_pred             CCCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCC
Confidence            45699999999999999999999998 5  9999998754

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.80  E-value=1.3e-05  Score=68.59  Aligned_cols=34  Identities=29%  Similarity=0.317  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC---cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~   39 (177)
                      .+|+||||+|.+|+.+|.+|++.|   +|+|||+...
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~   40 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER   40 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            479999999999999999999976   8999999654

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.79  E-value=1.6e-05  Score=70.23  Aligned_cols=35  Identities=20%  Similarity=0.169  Sum_probs=32.0

Q ss_pred             ccccEEEECCChHHHHHHHHHH-hCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLS-LHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa-~~g-~VLvLEaG~~   39 (177)
                      ..+|+||||+|++|+.+|.+|+ +.| +|+|||+.+.
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~   43 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG   43 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCC
Confidence            3689999999999999999999 888 9999999753

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.79  E-value=1.6e-05  Score=71.95  Aligned_cols=34  Identities=35%  Similarity=0.328  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHh-----CC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSL-----HH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~-----~g-~VLvLEaG~~   39 (177)
                      .+||||||+|++|+++|..|++     .| +|+|||+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            6899999999999999999999     99 9999998754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.78  E-value=1.7e-05  Score=70.22  Aligned_cols=35  Identities=31%  Similarity=0.217  Sum_probs=32.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+|+||||+|++|+.+|.+|++.| +|+|||+.+.
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~   55 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASG   55 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            3589999999999999999999999 9999999653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.78  E-value=1.6e-05  Score=70.55  Aligned_cols=34  Identities=12%  Similarity=0.159  Sum_probs=31.3

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ...||+||||+|+||..+|.+|++.| +|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            34699999999999999999999999 99999974

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.77  E-value=1.3e-05  Score=68.48  Aligned_cols=35  Identities=23%  Similarity=0.140  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC------cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH------TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g------~VLvLEaG~~   39 (177)
                      ..+|+||||+|++|+.+|.+|++.+      +|+|||+.+.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~   69 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGD   69 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCC
Confidence            4689999999999999999999876      7999999874

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.76  E-value=1.7e-05  Score=71.83  Aligned_cols=37  Identities=35%  Similarity=0.347  Sum_probs=33.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ...+|+||||+|+||+.+|.+|++.| +|+|+|++...
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~  426 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDL  426 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            45689999999999999999999999 99999997643

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.75  E-value=2.1e-05  Score=69.78  Aligned_cols=36  Identities=28%  Similarity=0.297  Sum_probs=33.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+|+||||+|++|+.+|..|++.| +|+|||+....
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~  161 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP  161 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            3689999999999999999999999 99999998754

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.73  E-value=2.3e-05  Score=67.38  Aligned_cols=36  Identities=36%  Similarity=0.384  Sum_probs=31.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      ..+|+||||+|.+|+.+|.+|++.+  +|+|||++...
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~   40 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI   40 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence            4589999999999999999999998  69999998653

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.71  E-value=1.7e-05  Score=69.59  Aligned_cols=33  Identities=24%  Similarity=0.116  Sum_probs=30.6

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      ...+|+||||+|+||+.+|.+|++.| +|+|+|.
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~  243 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE  243 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC
Confidence            34689999999999999999999999 9999986

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.71  E-value=2.2e-05  Score=67.30  Aligned_cols=33  Identities=21%  Similarity=0.158  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      +|+||||+|+||..+|.+|++.  + +|+|||+...
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN   36 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            5899999999999999999997  7 9999999875

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.69  E-value=2.1e-05  Score=72.58  Aligned_cols=35  Identities=34%  Similarity=0.321  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .+|+||||+|.+|+.+|.+|++.| +|+|||+....
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~  371 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRI  371 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccce
Confidence            589999999999999999999999 99999997643

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.67  E-value=3.5e-05  Score=66.74  Aligned_cols=37  Identities=27%  Similarity=0.245  Sum_probs=33.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ...+|++|||||+||+.+|.+|++.| +|+|+|+....
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~  157 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRM  157 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            34589999999999999999999999 99999998653

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.65  E-value=3.6e-05  Score=66.51  Aligned_cols=33  Identities=18%  Similarity=0.217  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHh---CC-c---EEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSL---HH-T---VLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~---~g-~---VLvLEaG~~   39 (177)
                      +|++|||+|+||+.+|.+|++   .| +   |+|+|+...
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~   42 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQAD   42 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCC
Confidence            699999999999999999999   88 8   999999764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.64  E-value=4e-05  Score=64.17  Aligned_cols=33  Identities=33%  Similarity=0.404  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH---TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~   38 (177)
                      .+|+||||+|+||..+|.+|++.+   +|+|+|+..
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            489999999999999999999987   589999864

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.63  E-value=4.6e-05  Score=68.81  Aligned_cols=37  Identities=30%  Similarity=0.328  Sum_probs=33.4

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ...+|++|||+|++|+.+|.+|++.| +|+|+|+....
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~  142 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  142 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            45689999999999999999999999 99999997653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.61  E-value=5.3e-05  Score=68.36  Aligned_cols=37  Identities=27%  Similarity=0.206  Sum_probs=33.3

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ...+|+||||+|+||..+|..|++.+ +|+|+|+....
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~  408 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI  408 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            44689999999999999999999999 99999997643

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.59  E-value=5.6e-05  Score=64.60  Aligned_cols=34  Identities=26%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC---cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~   39 (177)
                      .+|+||||+|+||+.+|.+|++.+   +|+|||+.+.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~   40 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   40 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCC
Confidence            489999999999999999999987   6999998764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.59  E-value=5.5e-05  Score=69.06  Aligned_cols=37  Identities=30%  Similarity=0.235  Sum_probs=33.3

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +..+|++|||+|+||+.+|..|++.| +|+|+|+....
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~  424 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI  424 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            34589999999999999999999999 99999997653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.58  E-value=6e-05  Score=63.88  Aligned_cols=36  Identities=14%  Similarity=0.134  Sum_probs=32.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      ..+|+||||+|+||..+|.+|++.+   +|+|+|+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCC
Confidence            4689999999999999999999987   59999998653

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.57  E-value=4.5e-05  Score=65.37  Aligned_cols=34  Identities=24%  Similarity=0.132  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      .|+||||+|+||+.+|.+|++.  + +|+|||+.+..
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   39 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATV   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            5899999999999999999997  6 99999999754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.57  E-value=4.9e-05  Score=64.97  Aligned_cols=33  Identities=21%  Similarity=0.287  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      .|+||||+|+||..+|.+|++.  + +|+|+|+...
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF   36 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCc
Confidence            3899999999999999999997  7 9999999875

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.53  E-value=4.8e-05  Score=65.51  Aligned_cols=34  Identities=21%  Similarity=0.159  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      .|+||||+|+||+.+|.+|++.  + +|+|+|+.+..
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            6899999999999999999997  6 99999998763

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.52  E-value=6.2e-05  Score=63.41  Aligned_cols=32  Identities=19%  Similarity=0.188  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHh---CC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSL---HH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~---~g-~VLvLEaG~~   39 (177)
                      |+||||+|++|+.+|.+|++   .+ +|+|||+...
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            79999999999999999999   77 9999999874

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.51  E-value=6e-05  Score=65.20  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      .|+||||+|+||+.+|.+|++.  + +|+|||+....
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            6999999999999999999996  6 99999998653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.48  E-value=8.9e-05  Score=64.52  Aligned_cols=36  Identities=19%  Similarity=0.175  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      ..+|+||||+|+||+.+|..|.+.  + +|+|||+.+..
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            468999999999999999999886  5 99999998653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.48  E-value=7.4e-05  Score=62.58  Aligned_cols=34  Identities=35%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCcEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~   39 (177)
                      -.|+||||+|+||..+|.+|++.++|+|+|+...
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g~V~lie~~~~   41 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTYEVTVIDKEPV   41 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTSEEEEECSSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcCCEEEEECCCC
Confidence            3799999999999999999988779999999875

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.48  E-value=7.1e-05  Score=64.00  Aligned_cols=35  Identities=31%  Similarity=0.429  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      .+|+||||+|+||+.+|.+|++.  + +|+|+|+.+..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            37999999999999999999997  5 99999998753

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.45  E-value=8.5e-05  Score=65.74  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      ..|+||||+|+||+.+|.+|++.  + +|+|+|+.+..
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            47999999999999999999997  6 99999999864

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.44  E-value=9.2e-05  Score=69.70  Aligned_cols=36  Identities=28%  Similarity=0.271  Sum_probs=32.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+|+||||+|+||..+|.+|++.+ +|+|||+.+..
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~  163 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEA  163 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            3589999999999999999999999 99999998654

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.44  E-value=0.00012  Score=68.19  Aligned_cols=37  Identities=30%  Similarity=0.328  Sum_probs=33.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ....|++|||+|++|+.+|.+|++.| +|+|||+....
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~  313 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  313 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcC
Confidence            34689999999999999999999999 99999997653

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.36  E-value=0.00016  Score=60.99  Aligned_cols=34  Identities=29%  Similarity=0.313  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      .|+||||+|+||+.+|.+|++.+   +|+|+|+.+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence            48999999999999999999987   79999998753

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.32  E-value=0.00019  Score=67.99  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=31.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-c-EEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-T-VLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~~   39 (177)
                      ..+|++|||||+||+.+|.+|++.| + |+|+|+...
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~  222 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY  222 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            4689999999999999999999999 4 999999754

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.32  E-value=0.00015  Score=61.86  Aligned_cols=34  Identities=35%  Similarity=0.404  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHh---CC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSL---HH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~---~g-~VLvLEaG~~~   40 (177)
                      .|+||||+|+||+.+|.+|++   .+ +|+|||+.+..
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            689999999999999999999   67 99999998753

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.31  E-value=0.00016  Score=62.45  Aligned_cols=34  Identities=24%  Similarity=0.167  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHh-C------C-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSL-H------H-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~-~------g-~VLvLEaG~~   39 (177)
                      .+|++|||+|+||+.+|.+|++ .      + +|+|+|+.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~   44 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   44 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCC
Confidence            4799999999999999999999 7      8 9999999864

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.29  E-value=0.00015  Score=62.91  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhC---C-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLH---H-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~---g-~VLvLEaG~~   39 (177)
                      .+|+||||+|+||..+|.+|++.   + +|+|||+...
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~   72 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSN   72 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            48999999999999999999985   3 9999999874

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.24  E-value=0.00019  Score=62.85  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      |++|||+|+||+.+|.+|++.  + +|+|+|+.+..
T Consensus         3 ~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~   38 (565)
T 3ntd_A            3 KILIIGGVAGGASAAARARRLSETAEIIMFERGEYV   38 (565)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             cEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            799999999999999999997  5 99999999764

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.22  E-value=0.00031  Score=59.39  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-c--EEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-T--VLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~--VLvLEaG~~~   40 (177)
                      .|+||||+|+||+.+|.+|++.+ +  |+|+|+.+..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~   39 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHL   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCC
Confidence            38999999999999999999998 5  9999998754

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.16  E-value=0.00021  Score=62.14  Aligned_cols=36  Identities=33%  Similarity=0.305  Sum_probs=31.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCcEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~~   40 (177)
                      ..+|+||||+|++|+.+|.+|++.-+|+|||+++..
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~~~V~vie~~~~~  142 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQYLTVALIEERGWL  142 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTTCCEEEECTTSSS
T ss_pred             ccCCEEEECccHHHHHHHHHHHhcCCEEEEeCCCCC
Confidence            357999999999999999999875589999998754

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.15  E-value=0.00028  Score=60.41  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      .+||||+|+||..+|.+|++.+   +|+|+|+++..
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            4899999999999999999876   79999998653

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.14  E-value=0.00029  Score=58.91  Aligned_cols=32  Identities=34%  Similarity=0.476  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~   39 (177)
                      .+||||+|+||..+|.+|.+.+   +|+|||....
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            3899999999999999998864   8999998764

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.11  E-value=9.7e-05  Score=64.50  Aligned_cols=37  Identities=22%  Similarity=0.128  Sum_probs=29.3

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC---------------cEEEEecCCC
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH---------------TVLLIEAGDF   39 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g---------------~VLvLEaG~~   39 (177)
                      .+..||+||||+|++|+.+|..|.+.+               .++.+|+-+.
T Consensus        36 ~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~   87 (501)
T 4b63_A           36 QDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQ   87 (501)
T ss_dssp             TTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSS
T ss_pred             CCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCC
Confidence            344599999999999999999998642               5677777653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.02  E-value=0.00046  Score=59.66  Aligned_cols=36  Identities=33%  Similarity=0.377  Sum_probs=31.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      ..+|+||||+|+||..+|.+|++.+   +|+|+|+.+..
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            3579999999999999999999864   89999998653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.92  E-value=0.00088  Score=56.47  Aligned_cols=36  Identities=22%  Similarity=0.227  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ++..++|||+|+||..+|.+|...+ +|+|+|+.+..
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~   44 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYL   44 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            4678999999999999999996666 99999998764

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=96.84  E-value=0.00072  Score=57.58  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~   39 (177)
                      .+||||+|+||..+|.+|++.+   +|+|||.-+.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            3899999999999999999854   8999998764

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.67  E-value=0.001  Score=58.07  Aligned_cols=34  Identities=15%  Similarity=0.247  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +..+||||+|.||..+|.+|++.+ +|+|||.-..
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            456999999999999999999888 9999998653

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.36  E-value=0.0022  Score=58.78  Aligned_cols=35  Identities=26%  Similarity=0.159  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC---------cEEEEecCC-CC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH---------TVLLIEAGD-FP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g---------~VLvLEaG~-~~   40 (177)
                      ..+++|||+|.+|+.+|.+|++.+         +|.|+|+.. ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            478999999999999999998742         799999987 54

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.22  E-value=0.0073  Score=43.34  Aligned_cols=38  Identities=21%  Similarity=0.378  Sum_probs=33.0

Q ss_pred             CCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           2 PTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         2 ~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      |.+.+-.++|||.|.-|..+|.+|.+.| +|+++|.-+.
T Consensus         3 ~~~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            3 AVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CCCCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             cccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4555667999999999999999999999 9999998643

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=95.70  E-value=0.01  Score=50.39  Aligned_cols=35  Identities=23%  Similarity=0.305  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  184 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP  184 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc
Confidence            468999999999999999999999 99999998753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.69  E-value=0.013  Score=42.58  Aligned_cols=38  Identities=24%  Similarity=0.382  Sum_probs=29.5

Q ss_pred             CCCCc-cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           1 MPTEY-LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         1 ~~~~~-~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ||... .-.++|||+|.-|..+|..|.+.| +|.+++.-+
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            44433 346899999999999999999999 999998754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.63  E-value=0.015  Score=41.38  Aligned_cols=32  Identities=22%  Similarity=0.301  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -.++|+|+|.-|..+|.+|.+.| +|+++|.-+
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            35999999999999999999999 999999743

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.38  E-value=0.019  Score=40.15  Aligned_cols=31  Identities=32%  Similarity=0.432  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -.++|||+|.-|..+|.+|++.+ +|.+++.-
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            35899999999999999999999 99999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.29  E-value=0.021  Score=41.36  Aligned_cols=30  Identities=13%  Similarity=-0.010  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .++|+|+|.-|..+|.+|.+.+ +|.++|.-
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            5899999999999999999999 99999975

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.16  E-value=0.017  Score=48.46  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+.+..
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  181 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP  181 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            36999999999999999999999 99999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.10  E-value=0.02  Score=45.80  Aligned_cols=34  Identities=15%  Similarity=0.141  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|+++...
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~  181 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELR  181 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEecccccC
Confidence            5899999999999999999999 999999987643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=94.96  E-value=0.023  Score=48.33  Aligned_cols=34  Identities=24%  Similarity=0.162  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~  202 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI  202 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence            36899999999999999999999 99999998754

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.95  E-value=0.025  Score=48.08  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.| +|.|+|+++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  205 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI  205 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence            47999999999999999999999 99999998754

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=94.87  E-value=0.025  Score=48.39  Aligned_cols=34  Identities=24%  Similarity=0.140  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  204 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEI  204 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            36899999999999999999999 99999998754

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.85  E-value=0.021  Score=48.85  Aligned_cols=34  Identities=24%  Similarity=0.174  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI  206 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            36899999999999999999999 99999998764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=94.79  E-value=0.031  Score=46.44  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -+++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  180 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQV  180 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcch
Confidence            46899999999999999999999 99999998754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.75  E-value=0.034  Score=38.92  Aligned_cols=30  Identities=20%  Similarity=0.313  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .++|+|+|.-|..+|.+|.+.+ +|.+++.-
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4899999999999999999999 99999864

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.74  E-value=0.025  Score=47.01  Aligned_cols=34  Identities=32%  Similarity=0.353  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee
Confidence            36899999999999999999999 99999998764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.69  E-value=0.028  Score=46.51  Aligned_cols=37  Identities=24%  Similarity=0.170  Sum_probs=28.7

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      |++...--|.|||+|+-|+-+|..+|.+| +|.|+|.-
T Consensus         1 Ma~p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~   38 (319)
T 3ado_A            1 MASPAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIE   38 (319)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             CCCCCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECC
Confidence            55555567899999999999999999999 99999864

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=94.44  E-value=0.039  Score=43.81  Aligned_cols=34  Identities=24%  Similarity=0.232  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.| +|.|+|+....
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            36899999999999999999999 99999987654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=94.44  E-value=0.037  Score=47.30  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.| +|.|+|+++..
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  218 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI  218 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcc
Confidence            36899999999999999999999 99999998764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=94.36  E-value=0.039  Score=46.97  Aligned_cols=34  Identities=29%  Similarity=0.293  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP  202 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCch
Confidence            36899999999999999999999 99999998753

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.22  E-value=0.045  Score=46.41  Aligned_cols=32  Identities=16%  Similarity=0.084  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-c-EEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-T-VLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~~   39 (177)
                      .++|||+|..|+-+|..|++.+ + |.|+++++.
T Consensus       214 ~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          214 SVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG  247 (447)
T ss_dssp             CEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             EEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCC
Confidence            6999999999999999999999 7 999998864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=94.21  E-value=0.043  Score=44.62  Aligned_cols=33  Identities=15%  Similarity=0.131  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~  201 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGL  201 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECC----
T ss_pred             EEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCC
Confidence            6899999999999999999999 99999998754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=94.19  E-value=0.05  Score=45.73  Aligned_cols=34  Identities=32%  Similarity=0.235  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  180 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL  180 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            46899999999999999999999 99999998764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.05  E-value=0.048  Score=40.42  Aligned_cols=31  Identities=26%  Similarity=0.229  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhC-C-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH-H-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG~   38 (177)
                      .++|||.|.-|..+|.+|.+. | +|+++|.-+
T Consensus        41 ~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           41 QVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            689999999999999999998 9 999998754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.03  E-value=0.045  Score=41.91  Aligned_cols=30  Identities=23%  Similarity=0.315  Sum_probs=27.8

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ++|||+|.-|..+|.+|.+.+ .|+++|.-+
T Consensus         3 iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            3 VIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            899999999999999999999 999999644

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=93.92  E-value=0.059  Score=46.37  Aligned_cols=34  Identities=32%  Similarity=0.371  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  229 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTC  229 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccch
Confidence            35899999999999999999999 99999998754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=93.88  E-value=0.035  Score=47.68  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -+++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       187 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  221 (480)
T 3cgb_A          187 EDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHI  221 (480)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCch
Confidence            57999999999999999999999 99999998653

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=93.84  E-value=0.058  Score=46.25  Aligned_cols=32  Identities=9%  Similarity=-0.066  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+++.+.
T Consensus       199 ~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             EEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            5899999999999999999999 9999998764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=93.62  E-value=0.068  Score=45.71  Aligned_cols=33  Identities=30%  Similarity=0.285  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|+.+..
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~  201 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRL  201 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            6899999999999999999999 99999998653

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=93.60  E-value=0.077  Score=42.07  Aligned_cols=34  Identities=24%  Similarity=0.125  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++++++..
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF  178 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCcc
Confidence            36899999999999999999999 99999998754

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=93.58  E-value=0.093  Score=35.33  Aligned_cols=31  Identities=26%  Similarity=0.296  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      .++|+|+|..|..+|.+|.+.|  +|.++++-.
T Consensus         7 ~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            7 NICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            5899999999999999999988  888887743

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=93.56  E-value=0.069  Score=45.60  Aligned_cols=34  Identities=21%  Similarity=0.160  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  213 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHV  213 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCcc
Confidence            36899999999999999999999 99999998753

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.55  E-value=0.073  Score=43.34  Aligned_cols=31  Identities=19%  Similarity=0.298  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||+|.-|+.+|.+|+++| .|.++.+..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            4889999999999999999999 999998764

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=93.52  E-value=0.072  Score=42.19  Aligned_cols=33  Identities=24%  Similarity=0.202  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++|+.+..
T Consensus       146 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          146 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            6899999999999999999999 99999988754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=93.49  E-value=0.079  Score=44.91  Aligned_cols=33  Identities=24%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  183 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV  183 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            7999999999999999999999 99999998764

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=93.44  E-value=0.074  Score=45.26  Aligned_cols=34  Identities=24%  Similarity=0.136  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  206 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRA  206 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            36899999999999999999999 99999998754

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.44  E-value=0.071  Score=43.25  Aligned_cols=31  Identities=29%  Similarity=0.283  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||+|.-|+.+|.+|+++| +|.++.+..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            4899999999999999999999 999998764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=93.38  E-value=0.072  Score=46.86  Aligned_cols=34  Identities=9%  Similarity=0.131  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+++.+..
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            36999999999999999999998 99999999864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=93.30  E-value=0.079  Score=46.55  Aligned_cols=33  Identities=12%  Similarity=0.170  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+++.+..
T Consensus       180 rV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  213 (540)
T 3gwf_A          180 RVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQY  213 (540)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCC
T ss_pred             eEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            6999999999999999999999 99999999863

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=93.23  E-value=0.086  Score=45.47  Aligned_cols=34  Identities=21%  Similarity=0.180  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV  209 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence            36899999999999999999999 99999999864

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=93.17  E-value=0.09  Score=44.52  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+.+..
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~  184 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV  184 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            36899999999999999999999 99999998754

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=93.16  E-value=0.089  Score=45.11  Aligned_cols=33  Identities=27%  Similarity=0.232  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  220 (479)
T 2hqm_A          187 KVVVVGAGYIGIELAGVFHGLGSETHLVIRGETV  220 (479)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcc
Confidence            6899999999999999999999 99999998753

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.10  E-value=0.087  Score=45.48  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       178 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  211 (500)
T 1onf_A          178 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI  211 (500)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             eEEEECChHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            5899999999999999999999 99999998753

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=93.08  E-value=0.072  Score=45.70  Aligned_cols=34  Identities=21%  Similarity=0.135  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.| +|.|+|+.+..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~  220 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL  220 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence            36899999999999999999999 99999998764

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=93.06  E-value=0.098  Score=43.88  Aligned_cols=34  Identities=35%  Similarity=0.459  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++|+.+..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDEL  178 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence            36899999999999999999999 99999998764

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.06  E-value=0.061  Score=45.79  Aligned_cols=34  Identities=18%  Similarity=0.140  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  212 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI  212 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence            36899999999999999999999 99999998754

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=93.04  E-value=0.089  Score=42.12  Aligned_cols=34  Identities=24%  Similarity=0.209  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++++.+..
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            36899999999999999999999 99999998754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=93.04  E-value=0.098  Score=44.36  Aligned_cols=33  Identities=30%  Similarity=0.376  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  184 (452)
T 2cdu_A          151 TITIIGSGYIGAELAEAYSNQNYNVNLIDGHERV  184 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSST
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCch
Confidence            5899999999999999999999 99999998754

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=92.90  E-value=0.079  Score=42.47  Aligned_cols=33  Identities=24%  Similarity=0.101  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++++++..
T Consensus       154 ~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~  187 (335)
T 2zbw_A          154 RVLIVGGGDSAVDWALNLLDTARRITLIHRRPQF  187 (335)
T ss_dssp             EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCcc
Confidence            6899999999999999999999 99999998754

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.83  E-value=0.089  Score=42.31  Aligned_cols=31  Identities=26%  Similarity=0.336  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||+|.-|+.+|.+|+++| +|.++.+..
T Consensus         4 kI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            4899999999999999999999 999998874

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=92.82  E-value=0.11  Score=41.87  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++++.+..
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~  190 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEF  190 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcC
Confidence            36899999999999999999999 99999988654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=92.79  E-value=0.097  Score=44.48  Aligned_cols=33  Identities=24%  Similarity=0.145  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|++...
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI  182 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCC
T ss_pred             EEEEECCccchhhhHHHHHhcCCcceeeeeeccc
Confidence            6899999999999999999999 99999999764

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=92.75  E-value=0.11  Score=44.14  Aligned_cols=33  Identities=12%  Similarity=0.155  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       178 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          178 RLAVIGSSVVALELAQAFARLGSKVTVLARNTLF  211 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence            6899999999999999999999 99999998754

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=92.74  E-value=0.13  Score=40.52  Aligned_cols=31  Identities=16%  Similarity=0.079  Sum_probs=27.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +.|||+|.-|..+|.+|++.| +|.++.+...
T Consensus         3 i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            3 ITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            789999999999999999999 9998877653

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.70  E-value=0.11  Score=42.59  Aligned_cols=30  Identities=37%  Similarity=0.530  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||+|.-|+.+|.+|+++| .|.++.+.
T Consensus         5 kI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            4889999999999999999999 99999874

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=92.69  E-value=0.091  Score=46.23  Aligned_cols=33  Identities=9%  Similarity=0.202  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+++.+..
T Consensus       193 rV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          193 RVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             EEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            6899999999999999999998 99999999863

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=92.63  E-value=0.12  Score=41.01  Aligned_cols=33  Identities=27%  Similarity=0.145  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++++....
T Consensus       147 ~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  180 (320)
T 1trb_A          147 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  180 (320)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcc
Confidence            6899999999999999999999 99999988654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=92.62  E-value=0.12  Score=44.05  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  209 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRC  209 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcc
Confidence            36899999999999999999999 99999998754

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=92.57  E-value=0.093  Score=44.35  Aligned_cols=34  Identities=15%  Similarity=0.045  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.  + +|.++++.+..
T Consensus       228 ~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          228 MKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            4799999999999999999998  7 99999998764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=92.54  E-value=0.12  Score=41.65  Aligned_cols=30  Identities=23%  Similarity=0.396  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -+.|||+|.-|..+|..|++.| +|.+++.-
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~   47 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQT   47 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            3889999999999999999999 99998764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=92.54  E-value=0.13  Score=41.19  Aligned_cols=33  Identities=21%  Similarity=0.167  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++++++..
T Consensus       154 ~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  187 (325)
T 2q7v_A          154 KVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTL  187 (325)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcC
Confidence            5899999999999999999999 99999988653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=92.42  E-value=0.13  Score=44.65  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQV  186 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc
Confidence            6999999999999999999999 99999998754

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=92.38  E-value=0.13  Score=40.83  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.+++++...
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~  208 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHL  208 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            35899999999999999999999 99999998764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.31  E-value=0.085  Score=45.58  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      -+||+|+|--|..+|.+|++.+ .|+|||.-+.
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4899999999999999999999 9999998653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.31  E-value=0.13  Score=43.73  Aligned_cols=32  Identities=16%  Similarity=0.173  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -.+||||.|.-|..+|..|.+.+ .|++||.-+
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            35999999999999999999999 999999754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=92.24  E-value=0.16  Score=42.41  Aligned_cols=34  Identities=26%  Similarity=0.212  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++|+.+..
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRV  187 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCch
Confidence            35899999999999999999999 99999998764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=92.23  E-value=0.14  Score=41.01  Aligned_cols=31  Identities=19%  Similarity=0.339  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -+.|||+|.-|..+|..|++.| +|.+.+.-.
T Consensus         6 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4789999999999999999999 999987653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=92.19  E-value=0.11  Score=44.51  Aligned_cols=33  Identities=24%  Similarity=0.183  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       200 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  233 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTI  233 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeccccc
Confidence            5899999999999999999999 99999998764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=92.15  E-value=0.14  Score=41.78  Aligned_cols=27  Identities=37%  Similarity=0.600  Sum_probs=25.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEE
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLI   34 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvL   34 (177)
                      .+.|||+|.-|+.+|.+|+++| .|.++
T Consensus        21 kI~IiGaGa~G~~~a~~L~~~G~~V~l~   48 (318)
T 3hwr_A           21 KVAIMGAGAVGCYYGGMLARAGHEVILI   48 (318)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            4899999999999999999999 89888

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=92.11  E-value=0.12  Score=42.03  Aligned_cols=33  Identities=24%  Similarity=0.194  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++++++..
T Consensus       165 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  198 (360)
T 3ab1_A          165 RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEF  198 (360)
T ss_dssp             EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             cEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCC
Confidence            6899999999999999999999 99999998754

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.10  E-value=0.12  Score=40.89  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ..++|||+|..|+.+|..|+..|  ++.|++...
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            56999999999999999999998  888988765

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=92.09  E-value=0.14  Score=40.66  Aligned_cols=30  Identities=33%  Similarity=0.304  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||+|.-|..+|.+|++.| +|.++++-
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            4889999999999999999999 99988763

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=92.08  E-value=0.18  Score=38.48  Aligned_cols=32  Identities=19%  Similarity=0.275  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+.|||+|.-|..+|.+|++.+ +|.++++...
T Consensus        21 ~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           21 EITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            5889999999999999999999 9999876543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=92.08  E-value=0.16  Score=42.37  Aligned_cols=33  Identities=21%  Similarity=0.183  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++|+.+..
T Consensus       144 ~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  177 (404)
T 3fg2_P          144 HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRV  177 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence            5899999999999999999999 99999998754

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=92.07  E-value=0.15  Score=43.45  Aligned_cols=34  Identities=29%  Similarity=0.268  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  207 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRA  207 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcC
Confidence            35899999999999999999999 99999998754

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=92.05  E-value=0.15  Score=44.83  Aligned_cols=30  Identities=17%  Similarity=0.089  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|++
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            5899999999999999999999 99999987

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=91.92  E-value=0.14  Score=40.82  Aligned_cols=33  Identities=24%  Similarity=0.185  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++++.+..
T Consensus       157 ~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~  190 (319)
T 3cty_A          157 RVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKY  190 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCcc
Confidence            5899999999999999999999 99999987654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=91.92  E-value=0.16  Score=43.32  Aligned_cols=33  Identities=30%  Similarity=0.194  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  222 (478)
T 3dk9_A          189 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV  222 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcc
Confidence            5899999999999999999999 99999998753

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.79  E-value=0.16  Score=41.13  Aligned_cols=30  Identities=27%  Similarity=0.345  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||+|.-|+.+|.+|+ ++ +|.++.+..
T Consensus         4 kI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            4 KIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             EEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            4899999999999999999 88 999998775

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=91.77  E-value=0.17  Score=42.26  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ..-++|||+|..|+.+|..|+..|  ++.|++....
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~V   69 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV   69 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEe
Confidence            356999999999999999999999  8999988764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=91.57  E-value=0.2  Score=42.64  Aligned_cols=34  Identities=26%  Similarity=0.248  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  215 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF  215 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            36899999999999999999999 99999998754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=91.40  E-value=0.17  Score=43.64  Aligned_cols=33  Identities=18%  Similarity=0.095  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhC---C-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH---H-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~---g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.   + +|.|+|+++..
T Consensus       193 ~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  229 (495)
T 2wpf_A          193 RVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLI  229 (495)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcc
Confidence            689999999999999999998   9 99999998754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=91.34  E-value=0.22  Score=42.25  Aligned_cols=33  Identities=24%  Similarity=0.234  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       149 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  182 (452)
T 3oc4_A          149 TVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENL  182 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence            5899999999999999999999 99999998754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=91.19  E-value=0.18  Score=43.37  Aligned_cols=34  Identities=24%  Similarity=0.156  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhC---C-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLH---H-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~---g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.   + +|.|+|+++..
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  225 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI  225 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCc
Confidence            3689999999999999999998   9 99999998753

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=91.16  E-value=0.2  Score=39.50  Aligned_cols=35  Identities=26%  Similarity=0.238  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      -.++|||+|..|+-+|..|++.+ +|.+++++....
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~  190 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK  190 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCC
Confidence            36899999999999999999999 999999987643

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=91.12  E-value=0.21  Score=43.85  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  222 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQV  222 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence            36899999999999999999999 99999998754

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=90.96  E-value=0.22  Score=40.65  Aligned_cols=31  Identities=29%  Similarity=0.305  Sum_probs=27.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ..+.|||+|.-|+.+|.+|+++| +|.+..+-
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            35889999999999999999999 99988764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=90.86  E-value=0.22  Score=40.47  Aligned_cols=30  Identities=27%  Similarity=0.418  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||+|.-|..+|..|++.| +|.++++-
T Consensus         6 ki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            6 TYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            5899999999999999999999 99888764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=90.85  E-value=0.17  Score=43.97  Aligned_cols=33  Identities=24%  Similarity=0.202  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       357 ~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l  390 (521)
T 1hyu_A          357 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  390 (521)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCEEEEEEeCccc
Confidence            6899999999999999999988 99999988754

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=90.84  E-value=0.25  Score=39.41  Aligned_cols=32  Identities=19%  Similarity=0.280  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCcEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHHTVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~   38 (177)
                      -.++|||+|..|+-+|..|++.++|.++++..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVAETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSEEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhhCCEEEEECCC
Confidence            36899999999999999999988888888874

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=90.83  E-value=0.24  Score=42.93  Aligned_cols=34  Identities=9%  Similarity=0.059  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~  249 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL  249 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence            46899999999999999999999 99999998754

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=90.81  E-value=0.15  Score=44.29  Aligned_cols=34  Identities=26%  Similarity=0.250  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhC--------------C-cEEEEecCCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH--------------H-TVLLIEAGDFPS   41 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~--------------g-~VLvLEaG~~~~   41 (177)
                      .++|||+|+.|+-+|..|++-              . +|.|+|+++...
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il  267 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL  267 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc
Confidence            489999999999999999852              2 799999998753

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=90.79  E-value=0.27  Score=42.10  Aligned_cols=31  Identities=16%  Similarity=-0.012  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .++|||+|..|+-+|..|++.+ +|.++|+..
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          187 KTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            5899999999999999999999 999999864

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=90.74  E-value=0.22  Score=39.41  Aligned_cols=32  Identities=31%  Similarity=0.295  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ..++|||+|..|+.+|..|+..|  ++.|++...
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            57999999999999999999999  888888765

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=90.62  E-value=0.2  Score=40.43  Aligned_cols=28  Identities=29%  Similarity=0.356  Sum_probs=26.5

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      +.|||+|.-|..+|..|++.| +|.++++
T Consensus         3 I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            3 VSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            789999999999999999999 9999987

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=90.61  E-value=0.27  Score=42.29  Aligned_cols=34  Identities=18%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  217 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV  217 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            36899999999999999999999 99999998754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=90.60  E-value=0.23  Score=43.07  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=28.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      --+.|||.|.-|+.+|..|++.| +|.+++.-
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~   40 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVD   40 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence            35789999999999999999999 99999764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=90.44  E-value=0.24  Score=39.20  Aligned_cols=34  Identities=24%  Similarity=0.138  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++++++..
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~  189 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKF  189 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSC
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcC
Confidence            36899999999999999999999 99999998764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=90.36  E-value=0.27  Score=38.55  Aligned_cols=30  Identities=13%  Similarity=0.162  Sum_probs=27.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      --++|||+|..|...|..|.+.| +|.|+..
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap   62 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAP   62 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence            36899999999999999999999 9999864

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=90.26  E-value=0.29  Score=42.43  Aligned_cols=30  Identities=20%  Similarity=0.063  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .++|||+|..|+-+|..|++.+ +|.|+|+.
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            4899999999999999999999 99999985

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=90.26  E-value=0.28  Score=41.93  Aligned_cols=34  Identities=29%  Similarity=0.317  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI  226 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            36899999999999999999999 99999998753

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=90.23  E-value=0.32  Score=36.62  Aligned_cols=29  Identities=24%  Similarity=0.292  Sum_probs=26.5

Q ss_pred             EEEEC-CChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVG-AGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG-~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +.||| +|..|..+|.+|++.+ +|.++++-
T Consensus         3 i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~   33 (212)
T 1jay_A            3 VALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             EEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            78999 9999999999999999 99988764

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=90.16  E-value=0.23  Score=40.53  Aligned_cols=35  Identities=29%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ...-++|||+|..|+.+|..|+..|  ++.|++...-
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~V   71 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKV   71 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            3468999999999999999999999  8999987653

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=90.10  E-value=0.25  Score=42.10  Aligned_cols=34  Identities=29%  Similarity=0.260  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhC-C-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLH-H-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++. + +|.++|+++..
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~  195 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQI  195 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcc
Confidence            4689999999999999999999 9 99999998754

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=90.07  E-value=0.21  Score=40.40  Aligned_cols=30  Identities=17%  Similarity=0.242  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -++|||+|..|...|..|.+.| +|.|++.-
T Consensus        15 ~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           15 RILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             EEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5899999999999999999999 99999854

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=90.01  E-value=0.33  Score=38.12  Aligned_cols=33  Identities=21%  Similarity=0.120  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++++++..
T Consensus       149 ~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          149 EVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             EEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            5899999999999999999999 99999988764

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=89.94  E-value=0.27  Score=42.34  Aligned_cols=30  Identities=23%  Similarity=0.327  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||+|.-|+.+|..|+++| .|++++.-
T Consensus        39 kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~   69 (463)
T 1zcj_A           39 SVGVLGLGTMGRGIAISFARVGISVVAVESD   69 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECC
Confidence            4889999999999999999999 99998754

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=89.63  E-value=0.28  Score=40.88  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ..-++|||+|..|+.+|..|+..|  ++.|++....
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~V  153 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI  153 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcC
Confidence            356999999999999999999999  8999987653

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=89.61  E-value=0.32  Score=43.70  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ..-++|||+|..|+.+|..|+..|  ++.|++....
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~V  361 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV  361 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            357999999999999999999999  8999998864

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=89.56  E-value=0.31  Score=43.62  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ..-++|||+|..|+.+|..|+..|  ++.|++...-
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~V  362 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV  362 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            356999999999999999999999  8999987753

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=89.45  E-value=0.3  Score=41.60  Aligned_cols=29  Identities=31%  Similarity=0.395  Sum_probs=26.8

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +.|||.|.-|+.+|..|++.| +|.+++.-
T Consensus         3 I~VIG~G~vG~~~A~~la~~G~~V~~~d~~   32 (436)
T 1mv8_A            3 ISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (436)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            789999999999999999999 99998764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=89.38  E-value=0.34  Score=40.33  Aligned_cols=31  Identities=32%  Similarity=0.269  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||+|.-|..+|..|+++| +|.+..+.+
T Consensus        31 kI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           31 PIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             eEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            5899999999999999999999 999987753

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=89.37  E-value=0.37  Score=40.90  Aligned_cols=34  Identities=24%  Similarity=0.101  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.++|+++..
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~  205 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEI  205 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            46899999999999999999999 99999998753

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=89.34  E-value=0.43  Score=36.45  Aligned_cols=31  Identities=26%  Similarity=0.238  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||+|..|..+|.+|++.+ +|.++++-.
T Consensus        30 ~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           30 KVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5899999999999999999999 999887653

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=89.22  E-value=0.32  Score=40.69  Aligned_cols=28  Identities=14%  Similarity=0.203  Sum_probs=25.4

Q ss_pred             cEEEECCChHHHHHHHHHHh-CC-cEEEEe
Q psy2463           8 LENIVGAGTAGCVLANRLSL-HH-TVLLIE   35 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~-~g-~VLvLE   35 (177)
                      .+.|||+|.-|+.+|..|++ +| +|.++.
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            47899999999999999998 48 999887

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=89.22  E-value=0.37  Score=38.78  Aligned_cols=31  Identities=23%  Similarity=0.358  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~   38 (177)
                      -+.|||+|.-|..+|..|++.+   .|.+++...
T Consensus         9 kI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            9 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            5899999999999999999987   688887754

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=89.20  E-value=0.35  Score=41.92  Aligned_cols=31  Identities=26%  Similarity=0.390  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -+.|||+|.-|..+|..|+++| .|++.+.-.
T Consensus        56 kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~   87 (460)
T 3k6j_A           56 SVAIIGGGTMGKAMAICFGLAGIETFLVVRNE   87 (460)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence            4889999999999999999999 999987643

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=89.14  E-value=0.42  Score=40.77  Aligned_cols=31  Identities=23%  Similarity=0.079  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .++|||+|..|+-+|..|++.+ +|.++|+..
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (483)
T 3dgh_A          189 KTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI  220 (483)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            5899999999999999999999 999999853

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=89.12  E-value=0.38  Score=41.24  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHH--------------------hCC--cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLS--------------------LHH--TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa--------------------~~g--~VLvLEaG~~   39 (177)
                      -.++|||+|..|+-+|..|+                    +.+  +|.|+++.+.
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            36899999999999999999                    456  6999998874

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=89.05  E-value=0.28  Score=40.40  Aligned_cols=30  Identities=27%  Similarity=0.282  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||+|.-|..+|.+|+++| +|.++.+.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            4889999999999999999999 99988764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=88.99  E-value=0.4  Score=38.93  Aligned_cols=32  Identities=19%  Similarity=0.368  Sum_probs=28.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      --+.|||+|.-|..+|..|++.+  +|.|++.-.
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            35899999999999999999987  899988754

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=88.87  E-value=0.38  Score=41.35  Aligned_cols=31  Identities=26%  Similarity=0.233  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||.|.-|+.+|..|++.| +|.+++.-.
T Consensus         4 kI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            4889999999999999999999 999988653

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=88.73  E-value=0.37  Score=37.44  Aligned_cols=33  Identities=12%  Similarity=0.007  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCcEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHHTVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~   39 (177)
                      -.++|||+|..|+-+|..|++.++|.+++.+..
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWGETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTSEEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhcCcEEEEECCCC
Confidence            368999999999999999998778999988765

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=88.72  E-value=0.48  Score=36.89  Aligned_cols=33  Identities=21%  Similarity=0.181  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      -.+-|||.|.-|..+|.+|++.| +|.+.++-+.
T Consensus        20 ~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           20 MKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            45789999999999999999999 9999877543

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=88.44  E-value=0.46  Score=40.83  Aligned_cols=33  Identities=27%  Similarity=0.486  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ...++|||+|..|+.+|..|+..|  ++.|++...
T Consensus        40 ~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~   74 (434)
T 1tt5_B           40 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   74 (434)
T ss_dssp             TCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            467999999999999999999999  899998764

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=88.21  E-value=0.37  Score=40.00  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ...++|||.|..|+.+|..|+..|  ++.|++-..
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~   70 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ   70 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            357999999999999999999999  899998764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=88.08  E-value=0.51  Score=37.48  Aligned_cols=30  Identities=20%  Similarity=0.101  Sum_probs=26.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -++|+|+|-.|..+|..|++.| +|.+..+-
T Consensus       121 ~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          121 RILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            5899999999999999999999 99887554

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=87.91  E-value=0.54  Score=40.24  Aligned_cols=34  Identities=12%  Similarity=0.042  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      -.++|||+|..|.-+|..|.+.|  +|.++++....
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            36999999999999999999988  59999988754

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=87.80  E-value=0.24  Score=35.23  Aligned_cols=31  Identities=19%  Similarity=0.146  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -+.|||+|..|..+|..|.+.+ +|.+.++-.
T Consensus        23 ~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           23 KILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             EEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            5889999999999999999988 988887643

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=87.74  E-value=0.48  Score=41.71  Aligned_cols=31  Identities=16%  Similarity=-0.003  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .++|||+|..|+-.|.-|+.-| +|.|+++..
T Consensus       225 ~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~  256 (542)
T 4b1b_A          225 KTLVVGASYVALECSGFLNSLGYDVTVAVRSI  256 (542)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEESSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEecccc
Confidence            5899999999999999999999 999998754

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=87.68  E-value=0.51  Score=41.01  Aligned_cols=30  Identities=30%  Similarity=0.469  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -+.|||+|.-|..+|..|+++| +|.+.+.-
T Consensus         7 kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~   37 (483)
T 3mog_A            7 TVAVIGSGTMGAGIAEVAASHGHQVLLYDIS   37 (483)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEECC
Confidence            4789999999999999999999 99998754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=87.66  E-value=0.46  Score=40.35  Aligned_cols=32  Identities=19%  Similarity=0.147  Sum_probs=29.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      ..-++|+|+|.+|..+|.-|...|  +|.++++-
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            467999999999999999999988  79999986

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=87.57  E-value=0.64  Score=40.60  Aligned_cols=34  Identities=32%  Similarity=0.532  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.+||||.|.-|..+|.+|.+.+ .|++||.-+..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            36899999999999999999999 99999987654

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=87.54  E-value=0.73  Score=36.02  Aligned_cols=32  Identities=28%  Similarity=0.264  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      -++|.|+|.-|..++.+|.+.| +|.++.+...
T Consensus         5 ~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            5 KILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            3899999999999999999999 9999987643

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=87.53  E-value=0.54  Score=38.19  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=26.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -+-|||+|.-|.-+|..|+ +| .|.+.++-+
T Consensus        14 ~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           14 KVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             EEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             eEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            4679999999999999999 99 999988643

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=87.47  E-value=0.57  Score=37.59  Aligned_cols=31  Identities=19%  Similarity=0.080  Sum_probs=27.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -.+.|||.|.-|..+|.+|++.| +|.+.++-
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~   39 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLN   39 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            35889999999999999999999 99998764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=87.39  E-value=0.59  Score=37.54  Aligned_cols=31  Identities=19%  Similarity=0.179  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||+|.-|..+|..|++.| +|.+.++-.
T Consensus        32 ~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            5899999999999999999999 999987653

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=87.22  E-value=0.6  Score=37.69  Aligned_cols=32  Identities=16%  Similarity=0.114  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -.+.|||.|.-|..+|.+|++.| +|.+.++-+
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            35899999999999999999999 999987654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=87.19  E-value=0.61  Score=36.99  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||.|.-|..+|.+|++.| +|.+.++-+
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP   34 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            3789999999999999999999 999987754

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=87.15  E-value=0.63  Score=36.57  Aligned_cols=29  Identities=24%  Similarity=0.318  Sum_probs=26.4

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +.|||+|.-|..+|..|++.+ +|.+.++-
T Consensus         3 i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   32 (279)
T 2f1k_A            3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (279)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            789999999999999999999 99888754

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=87.10  E-value=0.62  Score=37.81  Aligned_cols=30  Identities=27%  Similarity=0.496  Sum_probs=26.9

Q ss_pred             EEEECCChHHHHHHHHHHhC--C-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLH--H-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~   38 (177)
                      +.|||+|..|..+|..|++.  + .|.+++.-.
T Consensus         3 I~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            3 ITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            78999999999999999996  5 899998864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=87.04  E-value=0.61  Score=37.37  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+.|||.|.-|..+|.+|++.| +|.+.++-+.
T Consensus        17 ~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5899999999999999999999 9999887654

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=86.99  E-value=0.68  Score=37.17  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=27.9

Q ss_pred             cEEEEC-CChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVG-AGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG-~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -+.||| .|.-|..+|..|++.| +|.++++..
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            488999 9999999999999999 999987654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=86.82  E-value=0.58  Score=40.70  Aligned_cols=33  Identities=9%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.+ +|.++++.+..
T Consensus       188 ~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF  221 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             EEEEECCCccHHHHHHHHhhcCceEEEEEcCCcc
Confidence            5899999999999999999988 99999988754

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=86.77  E-value=0.53  Score=42.71  Aligned_cols=31  Identities=16%  Similarity=0.081  Sum_probs=29.3

Q ss_pred             cEEEEC--CChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVG--AGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG--~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .++|||  +|..|+-+|..|++.+ +|.|+|+++
T Consensus       530 ~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          530 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             eEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            689998  9999999999999999 999999987

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=86.50  E-value=0.56  Score=40.35  Aligned_cols=31  Identities=26%  Similarity=0.262  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHh----CC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSL----HH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~----~g-~VLvLEaG~   38 (177)
                      .++|||+|..|+-+|..|++    .+ +|.++|...
T Consensus       182 ~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~  217 (493)
T 1m6i_A          182 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEK  217 (493)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCc
Confidence            58999999999999999987    36 899999875

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=86.38  E-value=0.71  Score=37.38  Aligned_cols=29  Identities=28%  Similarity=0.460  Sum_probs=26.0

Q ss_pred             EEEECCChHHHHHHHHHHhCC---cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH---TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG   37 (177)
                      +.|||+|..|..+|..|+..+   .|.|++.-
T Consensus         3 I~VIGaG~vG~~la~~la~~g~~~eV~L~D~~   34 (304)
T 2v6b_A            3 VGVVGTGFVGSTAAFALVLRGSCSELVLVDRD   34 (304)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            789999999999999999987   68888764

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=86.29  E-value=0.85  Score=34.06  Aligned_cols=30  Identities=23%  Similarity=0.348  Sum_probs=26.9

Q ss_pred             EEEECC-ChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGA-GTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ++|.|+ |.-|..++.+|.+.| +|.++-+..
T Consensus         3 ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            789997 999999999999999 999887753

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=86.18  E-value=0.68  Score=40.44  Aligned_cols=30  Identities=23%  Similarity=0.277  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -++|+|+|..|..+|.+|+..| +|++.+.-
T Consensus       267 tVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~  297 (488)
T 3ond_A          267 VAVVAGYGDVGKGCAAALKQAGARVIVTEID  297 (488)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4789999999999999999999 99998764

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=86.18  E-value=0.72  Score=37.43  Aligned_cols=31  Identities=19%  Similarity=0.270  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||.|.-|..+|.+|++.| +|.+.++-+
T Consensus        33 ~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           33 KITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             EEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            5899999999999999999999 999987653

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=86.14  E-value=0.62  Score=39.65  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=29.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ..-++|+|+|.||.-+|.-|...|  +|.+++.-+
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            467899999999999999999888  899999864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=86.13  E-value=0.77  Score=35.77  Aligned_cols=31  Identities=16%  Similarity=0.125  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -++|.|+|.-|..++.+|.+.| +|.++-+..
T Consensus         7 ~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            7 TLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             EEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             cEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            3899999999999999999999 998887754

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=86.10  E-value=0.59  Score=38.44  Aligned_cols=32  Identities=19%  Similarity=0.332  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      --+.|||+|.-|..+|..|++.+  +|.|++.-.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            35999999999999999999987  888888754

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=86.10  E-value=0.75  Score=36.44  Aligned_cols=30  Identities=23%  Similarity=0.366  Sum_probs=27.2

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGA-GTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||+ |.-|..+|..|++.| +|.+.++-
T Consensus        13 ~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~   44 (286)
T 3c24_A           13 TVAILGAGGKMGARITRKIHDSAHHLAAIEIA   44 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSSSEEEEECCS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            4889999 999999999999999 99988764

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=86.07  E-value=0.74  Score=37.79  Aligned_cols=31  Identities=26%  Similarity=0.386  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      -+.|||+|.-|..+|..|++.+  +|.|++.-.
T Consensus        16 kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           16 KISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            5899999999999999999988  898888754

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=86.05  E-value=0.76  Score=36.43  Aligned_cols=30  Identities=23%  Similarity=0.211  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||.|.-|..+|..|++.+ +|.+.++-
T Consensus         6 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   36 (301)
T 3cky_A            6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLM   36 (301)
T ss_dssp             EEEEECCCTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5899999999999999999999 99888764

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=85.97  E-value=0.61  Score=39.28  Aligned_cols=28  Identities=29%  Similarity=0.402  Sum_probs=25.8

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +.|||.|.-|+.+|..|++ | +|.+++.-
T Consensus         3 I~VIG~G~vG~~~A~~La~-G~~V~~~d~~   31 (402)
T 1dlj_A            3 IAVAGSGYVGLSLGVLLSL-QNEVTIVDIL   31 (402)
T ss_dssp             EEEECCSHHHHHHHHHHTT-TSEEEEECSC
T ss_pred             EEEECCCHHHHHHHHHHhC-CCEEEEEECC
Confidence            7899999999999999999 9 99998764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=85.97  E-value=0.7  Score=36.63  Aligned_cols=30  Identities=13%  Similarity=0.262  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||.|.-|..+|..|++.+ +|.+.++-
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   37 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   37 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             eEEEECchHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4889999999999999999999 99888764

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=85.89  E-value=1  Score=33.43  Aligned_cols=30  Identities=27%  Similarity=0.309  Sum_probs=26.9

Q ss_pred             EEEECC-ChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGA-GTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ++|.|+ |.-|..++.+|++.| +|.++-+..
T Consensus         3 vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            3 IGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             EEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            789995 999999999999999 999988764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=85.62  E-value=0.76  Score=36.35  Aligned_cols=30  Identities=20%  Similarity=0.362  Sum_probs=27.1

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +.|||.|.-|..+|.+|++.| +|.+.++-+
T Consensus         3 i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             EEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            789999999999999999999 999987643

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=85.54  E-value=0.79  Score=39.15  Aligned_cols=32  Identities=16%  Similarity=0.189  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhC--------------------C--cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH--------------------H--TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~--------------------g--~VLvLEaG~~   39 (177)
                      .++|||+|..|+-+|..|++.                    +  +|.|+++.+.
T Consensus       149 ~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          149 RAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             EEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            589999999999999999973                    4  8999998764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=85.42  E-value=0.81  Score=35.69  Aligned_cols=31  Identities=23%  Similarity=0.215  Sum_probs=27.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-c-EEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-T-VLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG   37 (177)
                      -.+.|||+|.-|..+|..|++.+ + |.+.++-
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~   43 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRT   43 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            46899999999999999999998 7 8888754

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=85.41  E-value=1  Score=32.95  Aligned_cols=31  Identities=19%  Similarity=0.192  Sum_probs=27.5

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGA-GTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -++|+|+ |.-|..++.+|.+.| +|.++.+..
T Consensus         5 ~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             EEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            3889997 999999999999999 999988754

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=85.39  E-value=0.63  Score=36.93  Aligned_cols=31  Identities=19%  Similarity=0.202  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||.|.-|..+|.+|++.| +|.+.++-+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            3789999999999999999999 999987654

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=85.36  E-value=0.83  Score=37.41  Aligned_cols=31  Identities=26%  Similarity=0.377  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      -+.|||+|..|..+|..|+..+  +|.|++.-.
T Consensus         6 kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            6 KIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            5899999999999999999988  888888643

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=85.27  E-value=0.67  Score=41.83  Aligned_cols=33  Identities=33%  Similarity=0.434  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ..-++|||+|.-|+.+|..|+..|  ++.|++...
T Consensus        17 ~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~   51 (640)
T 1y8q_B           17 GGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDT   51 (640)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCB
T ss_pred             cCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            357899999999999999999999  899999775

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=85.24  E-value=0.72  Score=35.84  Aligned_cols=30  Identities=27%  Similarity=0.324  Sum_probs=25.8

Q ss_pred             cEEEECC-Ch-HHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGA-GT-AGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~-G~-aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      =++|.|+ |. -|..+|.+|++.| +|+++.+-
T Consensus        24 ~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~   56 (266)
T 3o38_A           24 VVLVTAAAGTGIGSTTARRALLEGADVVISDYH   56 (266)
T ss_dssp             EEEESSCSSSSHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEECCCCCchHHHHHHHHHHCCCEEEEecCC
Confidence            3788998 74 9999999999999 99998654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=85.09  E-value=0.93  Score=37.62  Aligned_cols=32  Identities=22%  Similarity=0.225  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      --++|+|+|..|..+|..|...| +|++++.-.
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            35899999999999999999999 999988653

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=85.08  E-value=0.84  Score=39.27  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+-|||.|.-|+.+|..|+++| +|++.+.-+.
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            56789999999999999999999 9999987654

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=85.04  E-value=0.67  Score=36.83  Aligned_cols=30  Identities=23%  Similarity=0.156  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -++|+|+|-+|..+|..|++.| +|.|..+-
T Consensus       121 ~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~  151 (272)
T 1p77_A          121 HVLILGAGGATKGVLLPLLQAQQNIVLANRT  151 (272)
T ss_dssp             EEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999999999999999 99998664

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=84.94  E-value=0.79  Score=35.66  Aligned_cols=28  Identities=25%  Similarity=0.284  Sum_probs=25.3

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      +.|||.|.-|..+|.+|++.| +|.+.++
T Consensus         3 I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            3 VGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             EEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            679999999999999999999 8888655

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=84.93  E-value=0.56  Score=44.02  Aligned_cols=33  Identities=15%  Similarity=0.116  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++.| +|.|||+.+..
T Consensus       286 ~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~  319 (965)
T 2gag_A          286 RIAVATTNDSAYELVRELAATGGVVAVIDARSSI  319 (965)
T ss_dssp             SEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSC
T ss_pred             eEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCcc
Confidence            5899999999999999999999 99999998753

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=84.90  E-value=0.78  Score=41.82  Aligned_cols=30  Identities=33%  Similarity=0.473  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -+-|||+|.-|..+|..|+++| .|++.+.-
T Consensus       314 kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~  344 (725)
T 2wtb_A          314 KVAIIGGGLMGSGIATALILSNYPVILKEVN  344 (725)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEEEcCCHhhHHHHHHHHhCCCEEEEEECC
Confidence            3889999999999999999999 99998754

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=84.90  E-value=0.49  Score=36.24  Aligned_cols=31  Identities=29%  Similarity=0.519  Sum_probs=26.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEE-EecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLL-IEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLv-LEaG~   38 (177)
                      .+.|||+|.-|..+|..|++.+ +|.+ .++..
T Consensus        25 kI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           25 TYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             CEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            5889999999999999999999 8877 65543

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=84.73  E-value=0.81  Score=35.92  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=26.2

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +.|||.|.-|..+|.+|++ | +|.+.++-.
T Consensus         4 i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            4 VAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             EEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             EEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            7899999999999999999 9 999987653

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=84.73  E-value=1  Score=35.76  Aligned_cols=30  Identities=20%  Similarity=0.171  Sum_probs=26.5

Q ss_pred             cEEEEC-CChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVG-AGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG-~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -++|+| +|-.|..+|.+|++.| +|.++.+-
T Consensus       121 ~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          121 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            489999 9999999999999999 98887653

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=84.69  E-value=1.1  Score=33.95  Aligned_cols=31  Identities=19%  Similarity=0.202  Sum_probs=27.4

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGA-GTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -++|.|+ |.-|..+|.+|++.| +|.++-+-.
T Consensus        23 ~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           23 RVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             eEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            4789997 999999999999999 999987754

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=84.44  E-value=0.96  Score=39.06  Aligned_cols=30  Identities=23%  Similarity=0.285  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||.|.-|..+|.+|++.| +|.+..+-
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999 99998763

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=84.25  E-value=1  Score=39.02  Aligned_cols=31  Identities=23%  Similarity=0.247  Sum_probs=28.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -++.|||.|.-|..+|.+|+++| +|.+..+-
T Consensus        16 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~   47 (480)
T 2zyd_A           16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRS   47 (480)
T ss_dssp             BSEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CeEEEEccHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            46899999999999999999999 99988664

>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}

Probab=84.18  E-value=0.94  Score=37.25  Aligned_cols=27  Identities=22%  Similarity=0.242  Sum_probs=23.3

Q ss_pred             cEEEECCChHH-----HHHHHHHHhCC-cEEEE
Q psy2463           8 LENIVGAGTAG-----CVLANRLSLHH-TVLLI   34 (177)
Q Consensus         8 D~IVVG~G~aG-----~v~A~rLa~~g-~VLvL   34 (177)
                      -+||.|||++|     ..+|.+|.+.| +|+++
T Consensus         4 ~i~i~~GGTgGHi~palala~~L~~~g~~V~~v   36 (365)
T 3s2u_A            4 NVLIMAGGTGGHVFPALACAREFQARGYAVHWL   36 (365)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            37999999997     56899999999 88876

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=84.06  E-value=0.91  Score=39.95  Aligned_cols=33  Identities=15%  Similarity=0.256  Sum_probs=29.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      ...++|||+|.-|+.+|..|+..|  ++.|++...
T Consensus        32 ~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~   66 (531)
T 1tt5_A           32 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   66 (531)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCB
T ss_pred             cCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            367999999999999999999999  899998764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=84.03  E-value=0.79  Score=39.51  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=28.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ...+.|||.|.-|+++|..||+.| +|+.++--
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did   53 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVN   53 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECC
Confidence            357899999999999999999999 99988754

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=84.03  E-value=1.1  Score=36.09  Aligned_cols=32  Identities=19%  Similarity=0.272  Sum_probs=28.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -.+.|||.|.-|..+|.+|++.| +|.+.++-+
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999999999999999999 999887643

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=83.83  E-value=1.1  Score=36.50  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=29.5

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC---cEEEEecC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH---TVLLIEAG   37 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG   37 (177)
                      |.....--+.|||+|..|..+|..|+..+   .|.+++.-
T Consensus         1 m~~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            44434456899999999999999999876   68888764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=83.76  E-value=1.2  Score=35.62  Aligned_cols=32  Identities=16%  Similarity=0.221  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      --+.|||.|..|..+|.+|...| +|++.++-.
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            35899999999999999999999 999987643

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=83.75  E-value=1.1  Score=35.88  Aligned_cols=32  Identities=25%  Similarity=0.251  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|+|+|-+|..+|..|++.| +|.|.-+-..
T Consensus       120 ~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          120 NALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999999999999999999 9988866543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=83.67  E-value=1.1  Score=36.22  Aligned_cols=30  Identities=13%  Similarity=0.051  Sum_probs=26.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      .++|||+|.+|..+|..|++.|  +|.|..+-
T Consensus       143 ~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          143 RILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             EEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            5899999999999999999988  78887654

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=83.65  E-value=1.1  Score=39.16  Aligned_cols=34  Identities=12%  Similarity=0.076  Sum_probs=30.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+--+||||.|.-|..+|.+|.+.+ .|+++|.-+
T Consensus       126 ~~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~  160 (565)
T 4gx0_A          126 TRGHILIFGIDPITRTLIRKLESRNHLFVVVTDNY  160 (565)
T ss_dssp             CCSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCH
T ss_pred             cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence            3457999999999999999999999 999998754

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=83.60  E-value=0.92  Score=36.02  Aligned_cols=30  Identities=23%  Similarity=0.203  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||+|..|..+|..|.+.+ +|.+..+-
T Consensus       131 ~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~  161 (275)
T 2hk9_A          131 SILVLGAGGASRAVIYALVKEGAKVFLWNRT  161 (275)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHcCCEEEEEECC
Confidence            5899999999999999999999 99888764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=83.55  E-value=0.91  Score=36.60  Aligned_cols=31  Identities=26%  Similarity=0.459  Sum_probs=26.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~   38 (177)
                      -+.|||+|.-|..+|..|++.+   .|.+++.-.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            3789999999999999999977   688888753

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=83.52  E-value=1.1  Score=36.28  Aligned_cols=30  Identities=27%  Similarity=0.438  Sum_probs=26.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      -+.|||+|.-|..+|..|+..+  +|.|++.-
T Consensus         4 kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~   35 (309)
T 1ur5_A            4 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIV   35 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            3889999999999999999988  88888864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=83.46  E-value=1  Score=42.44  Aligned_cols=31  Identities=19%  Similarity=0.129  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      .++|||+|..|+-+|..|++.|  +|.|+++..
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            7999999999999999999988  799999986

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=83.45  E-value=1.2  Score=36.35  Aligned_cols=33  Identities=30%  Similarity=0.401  Sum_probs=28.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH---TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~   38 (177)
                      ..-+.|||+|..|..+|..|+..+   .|.|++.-.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            357999999999999999999987   689988743

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=83.40  E-value=0.76  Score=36.29  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=25.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEe
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIE   35 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLE   35 (177)
                      .+.|||.|.-|..+|.+|++.| +|.+.+
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~   33 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLARAGHQLHVTT   33 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHHTTCEEEECC
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCEEEEEc
Confidence            3789999999999999999999 998887

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=83.35  E-value=1.1  Score=38.58  Aligned_cols=31  Identities=16%  Similarity=0.098  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||.|.-|..+|..|++.| +|.+.++-.
T Consensus         4 ~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            5889999999999999999999 999987643

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=83.27  E-value=1.3  Score=35.52  Aligned_cols=30  Identities=17%  Similarity=0.246  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -+.|||.|..|..+|.+|...| +|++.++-
T Consensus       159 ~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~  189 (300)
T 2rir_A          159 QVAVLGLGRTGMTIARTFAALGANVKVGARS  189 (300)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCEEEEEECC
Confidence            5889999999999999999999 99998764

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=83.19  E-value=0.86  Score=39.08  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=28.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ...-|||.|.-|.++|..|+++| +|++.+.-+
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34679999999999999999999 999987654

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=83.15  E-value=1.2  Score=38.22  Aligned_cols=30  Identities=20%  Similarity=-0.009  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -++|||+|..|...|..|.+.| +|.|++.-
T Consensus        14 ~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           14 DCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            4899999999999999999999 99999853

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=83.00  E-value=1.2  Score=37.99  Aligned_cols=33  Identities=18%  Similarity=0.087  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .-++|||+|..|..+|..|...| +|.+.+.-+.
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999889 9999876553

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=82.95  E-value=1.3  Score=36.64  Aligned_cols=32  Identities=19%  Similarity=0.142  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      --++|+|+|.+|..+|..|...| +|.++++-.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            35899999999999999999999 999987643

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=82.94  E-value=1.1  Score=38.50  Aligned_cols=30  Identities=17%  Similarity=0.197  Sum_probs=26.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .+.|||.|.-|+.+|..|++ | +|.+++.-+
T Consensus        38 kIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           38 KITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            58899999999999999998 9 999988654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=82.91  E-value=0.99  Score=36.70  Aligned_cols=29  Identities=31%  Similarity=0.440  Sum_probs=25.8

Q ss_pred             EEEECCChHHHHHHHHHHhCC---cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH---TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG   37 (177)
                      +.|||+|.-|..+|..|++.+   .|.+++.-
T Consensus         3 I~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            3 IGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            789999999999999999976   68888764

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=82.89  E-value=1.3  Score=35.68  Aligned_cols=31  Identities=26%  Similarity=0.289  Sum_probs=26.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      --++|+|+|-+|..+|..|++.|  +|.|+.+-
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~  160 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence            35899999999999999999998  58887543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=82.88  E-value=1.3  Score=33.16  Aligned_cols=31  Identities=26%  Similarity=0.168  Sum_probs=27.5

Q ss_pred             EEEEC-CChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           9 ENIVG-AGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG-~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ++|.| +|.-|..++.+|++.| +|.++-+-..
T Consensus         3 ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (219)
T 3dqp_A            3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVE   35 (219)
T ss_dssp             EEEESTTSHHHHHHHHHHTTSSCEEEEEESSGG
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            78898 7999999999999999 9999887653

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=82.84  E-value=1  Score=41.21  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -+-|||+|+-|.-+|..+|..| .|+|+|.-+
T Consensus       318 ~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          318 SVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            5789999999999999999999 999998653

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=82.75  E-value=1.5  Score=34.42  Aligned_cols=32  Identities=25%  Similarity=0.211  Sum_probs=28.5

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGA-GTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      -++|.|+ |.-|..++.+|.+.| +|.++.+...
T Consensus         9 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            9 RILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            4889998 999999999999999 9999987654

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=82.66  E-value=1  Score=35.74  Aligned_cols=29  Identities=24%  Similarity=0.270  Sum_probs=25.8

Q ss_pred             cEEEECCChHHHHHHHHHHhC-----C--cEEEEec
Q psy2463           8 LENIVGAGTAGCVLANRLSLH-----H--TVLLIEA   36 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~-----g--~VLvLEa   36 (177)
                      .+.|||+|.-|..+|.+|+++     |  +|.++.+
T Consensus        10 ~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A           10 KIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            589999999999999999988     6  7888765

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=82.63  E-value=1.7  Score=32.89  Aligned_cols=30  Identities=30%  Similarity=0.393  Sum_probs=26.3

Q ss_pred             EEEECC-ChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGA-GTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ++|.|+ |.-|..+|.+|++.| +|.++.+..
T Consensus         4 vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~   35 (255)
T 2dkn_A            4 IAITGSASGIGAALKELLARAGHTVIGIDRGQ   35 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            688886 899999999999999 999987754

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=82.60  E-value=1.4  Score=34.55  Aligned_cols=30  Identities=27%  Similarity=0.247  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||+|..|..+|..|.+.+ +|.+..+-
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~  148 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRT  148 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            6899999999999999999999 99888754

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=82.58  E-value=0.92  Score=41.28  Aligned_cols=30  Identities=20%  Similarity=0.337  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -+-|||+|.-|..+|..|+++| .|++.+.-
T Consensus       316 kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~  346 (715)
T 1wdk_A          316 QAAVLGAGIMGGGIAYQSASKGTPILMKDIN  346 (715)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEECCChhhHHHHHHHHhCCCEEEEEECC
Confidence            4889999999999999999999 99998754

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=82.55  E-value=0.89  Score=39.29  Aligned_cols=30  Identities=27%  Similarity=0.339  Sum_probs=26.9

Q ss_pred             cEEEECCChHHHHHHHHHHhC--C-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH--H-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG   37 (177)
                      .+.|||.|.-|+.+|..|++.  + +|.+++.-
T Consensus        11 kI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A           11 KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            589999999999999999998  6 89998753

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=82.49  E-value=1.3  Score=37.15  Aligned_cols=30  Identities=13%  Similarity=0.290  Sum_probs=26.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      --++|+|.|.-|..+|.+|.+.| +|++.+.
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~  204 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDV  204 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcC
Confidence            34899999999999999999999 9998764

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=82.42  E-value=0.91  Score=38.97  Aligned_cols=30  Identities=17%  Similarity=0.237  Sum_probs=27.0

Q ss_pred             cEEEECCChHHHHHHHHHHhC--C-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH--H-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG   37 (177)
                      .+.|||.|.-|+.+|..|++.  | +|.+++.-
T Consensus         7 kI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~   39 (467)
T 2q3e_A            7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVN   39 (467)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            489999999999999999998  7 89998764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=82.41  E-value=1.4  Score=36.76  Aligned_cols=31  Identities=29%  Similarity=0.290  Sum_probs=27.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      --++|||+|..|..+|..|...| +|++.+.-
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~  200 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDIN  200 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            35899999999999999999999 99998864

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=82.37  E-value=1.1  Score=40.23  Aligned_cols=33  Identities=18%  Similarity=0.111  Sum_probs=30.2

Q ss_pred             cEEEEC--CChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVG--AGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG--~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||  +|..|+-+|..|++.+ +|.++|.....
T Consensus       525 ~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l  560 (690)
T 3k30_A          525 KVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQV  560 (690)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             EEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccc
Confidence            489999  9999999999999999 99999988764

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=82.31  E-value=1.6  Score=34.55  Aligned_cols=30  Identities=20%  Similarity=0.207  Sum_probs=26.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      -++|||+|-+|..++..|.+.|  +|.|..+-
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            6899999999999999999988  78888764

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=82.13  E-value=1.5  Score=35.93  Aligned_cols=30  Identities=20%  Similarity=0.293  Sum_probs=26.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      .++|+|+|-+|..+|..|++.|  +|.|+-+-
T Consensus       156 ~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          156 KMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             EEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            5899999999999999999998  68887654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=82.11  E-value=1.6  Score=32.59  Aligned_cols=31  Identities=23%  Similarity=0.195  Sum_probs=26.7

Q ss_pred             EEEEC-CChHHHHHHHHHH-hCC-cEEEEecCCC
Q psy2463           9 ENIVG-AGTAGCVLANRLS-LHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG-~G~aG~v~A~rLa-~~g-~VLvLEaG~~   39 (177)
                      ++|.| +|.-|..+|.+|+ +.| +|.++.+-..
T Consensus         8 vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~   41 (221)
T 3r6d_A            8 ITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK   41 (221)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             EEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc
Confidence            89999 5999999999999 789 9999877543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=82.07  E-value=1.3  Score=37.31  Aligned_cols=32  Identities=19%  Similarity=0.194  Sum_probs=28.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      --++|||+|..|..+|..|...| +|++.+.-+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            35899999999999999998889 999988654

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=81.99  E-value=1.6  Score=37.57  Aligned_cols=33  Identities=15%  Similarity=0.189  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      .|+|||+|.+|+-+|..|++.  + +|.++=+.+..
T Consensus       248 rV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~  283 (501)
T 4b63_A          248 NIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAM  283 (501)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSC
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            599999999999999999975  4 89888887654

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=81.80  E-value=1.6  Score=33.71  Aligned_cols=29  Identities=28%  Similarity=0.442  Sum_probs=24.2

Q ss_pred             EEEECCCh-HHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVGAGT-AGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~-aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ++|.|++. -|..+|.+|++.| +|+++.+-
T Consensus        12 vlITGas~gIG~~~a~~l~~~G~~V~~~~r~   42 (261)
T 3n74_A           12 ALITGAGSGFGEGMAKRFAKGGAKVVIVDRD   42 (261)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            77888654 4999999999999 99998654

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=81.76  E-value=1.3  Score=36.15  Aligned_cols=31  Identities=19%  Similarity=0.296  Sum_probs=26.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC---cEEEEec
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH---TVLLIEA   36 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEa   36 (177)
                      ..-+.|||+|..|..+|..|+..+   .|.|++.
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di   39 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDL   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            356999999999999999999877   6888875

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=81.60  E-value=1.8  Score=34.37  Aligned_cols=31  Identities=23%  Similarity=0.280  Sum_probs=27.3

Q ss_pred             EEEECC-ChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           9 ENIVGA-GTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ++|.|+ |.-|..++.+|.+.| +|.++.+...
T Consensus        16 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   48 (342)
T 2x4g_A           16 YAVLGATGLLGHHAARAIRAAGHDLVLIHRPSS   48 (342)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCEEEEEecChH
Confidence            889995 999999999999999 9999887543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=81.57  E-value=1.5  Score=36.53  Aligned_cols=30  Identities=17%  Similarity=0.318  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||.|.-|..+|.+|++.| +|.+.++-
T Consensus        24 kIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~   54 (358)
T 4e21_A           24 QIGMIGLGRMGADMVRRLRKGGHECVVYDLN   54 (358)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECchHHHHHHHHHHHhCCCEEEEEeCC
Confidence            5889999999999999999999 99998764

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=81.55  E-value=1.7  Score=37.38  Aligned_cols=31  Identities=23%  Similarity=0.187  Sum_probs=28.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ..+.|||.|.-|..+|..|++.| +|.+..+-
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~   37 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRT   37 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            46899999999999999999999 99988764

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=81.54  E-value=1.2  Score=40.67  Aligned_cols=34  Identities=26%  Similarity=0.481  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ...|+|||+|.-|+.+|..|+..|  ++.|++...-
T Consensus       411 ~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v  446 (805)
T 2nvu_B          411 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI  446 (805)
T ss_dssp             TCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCee
Confidence            568999999999999999999999  8999997753

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=81.29  E-value=1.6  Score=34.89  Aligned_cols=30  Identities=13%  Similarity=0.014  Sum_probs=26.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEec
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEA   36 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEa   36 (177)
                      -.++|+|+|-+|..+|..|++.|  +|.|.-+
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R  152 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANR  152 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEEEEEeC
Confidence            35899999999999999999998  7877654

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=81.26  E-value=1.4  Score=36.27  Aligned_cols=30  Identities=23%  Similarity=0.351  Sum_probs=26.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC---cEEEEec
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEA   36 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEa   36 (177)
                      --+.|||+|..|..+|..|++.+   .|.|++.
T Consensus         6 ~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~   38 (326)
T 3pqe_A            6 NKVALIGAGFVGSSYAFALINQGITDELVVIDV   38 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEec
Confidence            35899999999999999999977   6888875

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=81.25  E-value=0.9  Score=34.75  Aligned_cols=33  Identities=15%  Similarity=0.033  Sum_probs=26.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCcEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHHTVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~   38 (177)
                      .-.+||+|+|.-|..+|..|.+.+.|+++|.-+
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~v~vid~~~   41 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEVFVLAEDEN   41 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEEEEEESCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCeEEEEECCH
Confidence            346899999999999999998764477777643

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=81.10  E-value=1.5  Score=38.14  Aligned_cols=32  Identities=19%  Similarity=0.109  Sum_probs=28.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..+.|||.|.-|..+|..|+++| +|.+.++-+
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46889999999999999999999 999887643

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=81.05  E-value=2.1  Score=34.22  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=28.4

Q ss_pred             ccEEEECC-ChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGA-GTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      --++|.|+ |.-|..++.+|.+.| +|.++.+...
T Consensus        20 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           20 HMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            35899998 999999999999999 9999877653

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=81.00  E-value=1.8  Score=33.88  Aligned_cols=30  Identities=20%  Similarity=0.163  Sum_probs=26.9

Q ss_pred             EEEECC-ChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGA-GTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ++|+|+ |.-|..++.+|.+.| +|.++-+..
T Consensus         7 ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            7 ILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             EEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             EEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            899996 999999999999999 998887754

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=81.00  E-value=1.6  Score=35.71  Aligned_cols=31  Identities=23%  Similarity=0.158  Sum_probs=27.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -+.|||.|.-|..+|..|++.| +|.+..+-.
T Consensus        18 ~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           18 KVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             EEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            3889999999999999999999 888876543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=80.80  E-value=1.6  Score=36.43  Aligned_cols=32  Identities=16%  Similarity=0.141  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -.++|+|+|..|..+|..|...| +|.+.+.-+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999999999999998889 999988754

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=80.73  E-value=1.8  Score=34.79  Aligned_cols=31  Identities=16%  Similarity=0.178  Sum_probs=26.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      -.++|+|+|-+|..+|..|++.|  +|.|.-+-
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~  159 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRT  159 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             CEEEEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence            35899999999999999999988  78887654

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=80.52  E-value=1.7  Score=35.92  Aligned_cols=31  Identities=23%  Similarity=0.231  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -+.|||.|.-|..+|..|.+.| +|.+.++-+
T Consensus        10 kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A           10 PVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5789999999999999999999 999887543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=80.48  E-value=1.3  Score=37.39  Aligned_cols=32  Identities=13%  Similarity=0.060  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      --++|||+|..|..+|..|...| +|.+++.-+
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999999999999998889 999987654

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=80.34  E-value=1.9  Score=35.27  Aligned_cols=31  Identities=16%  Similarity=0.297  Sum_probs=26.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      -.++|+|+|-+|..+|..|++.|  +|.|.-+-
T Consensus       149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            35899999999999999999998  68887665

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=80.25  E-value=1.7  Score=35.82  Aligned_cols=30  Identities=20%  Similarity=0.398  Sum_probs=26.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC---cEEEEec
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEA   36 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEa   36 (177)
                      --+.|||+|..|..+|..|+..+   .|.|++.
T Consensus        20 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di   52 (331)
T 4aj2_A           20 NKITVVGVGAVGMACAISILMKDLADELALVDV   52 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEeC
Confidence            45899999999999999999987   6888875

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=80.24  E-value=1.6  Score=33.75  Aligned_cols=30  Identities=13%  Similarity=0.282  Sum_probs=26.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||.|.-|..+|..|++.+ .|.+.++-
T Consensus         5 ~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~   35 (259)
T 2ahr_A            5 KIGIIGVGKMASAIIKGLKQTPHELIISGSS   35 (259)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEECCC
Confidence            4889999999999999999998 88888764

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=80.20  E-value=1.6  Score=35.10  Aligned_cols=32  Identities=28%  Similarity=0.187  Sum_probs=27.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      -.++|+|+|-+|..+|..|++.|  +|.|.-+-.
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            35899999999999999999988  788875543

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=80.08  E-value=2  Score=32.50  Aligned_cols=29  Identities=24%  Similarity=0.205  Sum_probs=24.3

Q ss_pred             EEEECCC-hHHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVGAG-TAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G-~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ++|.|++ --|..+|.+|++.| +|+++.+-
T Consensus         4 vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~   34 (230)
T 3guy_A            4 IVITGASSGLGAELAKLYDAEGKATYLTGRS   34 (230)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEecCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            6788864 56999999999999 99998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	8e-24
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	5e-21
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	4e-19
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	5e-17
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	7e-17
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	6e-14
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	5e-12
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	7e-05
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	9e-05
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-04
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	3e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	3e-04
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	6e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	0.003
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	0.004

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 93.8 bits (232), Expect = 8e-24
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 11  IVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANS 70
           IVG GT+GC LA  LS  + VL++E G  P+ + N+      +   + +   +T  +   
Sbjct: 31  IVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVER-- 88

Query: 71  SGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSK 120
              +  +     RG+VLGG+  IN   +       + A G  +D   V++
Sbjct: 89  --FVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQ 136

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 86.1 bits (212), Expect = 5e-21
 Identities = 31/126 (24%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 11  IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPS---FWSNIPLTSPILQRSEHDWQYETA 65
           I G G  G  +A +L+      VL+IE G + S        P     +  +  D  Y T 
Sbjct: 29  IAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTV 88

Query: 66  PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHI 125
           P  N      N  +    GK LGGS  IN  +         ++W     +G       ++
Sbjct: 89  PLIN------NRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSW--EKVFGMEGWNWDNM 140

Query: 126 IGYDRK 131
             Y +K
Sbjct: 141 FEYMKK 146

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 81.1 bits (199), Expect = 4e-19
 Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 11  IVGAGTAGCVLANRLSL--HHTVLLIEAGDFPS---FWSNIPLTSPILQRSEHDWQYETA 65
           I G G  G   A RL+   + +VL+IE+G + S              +  S  D  YET 
Sbjct: 22  IAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETV 81

Query: 66  PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVS 119
                     N  +    G  LGGS  +N            ++W   F     +
Sbjct: 82  EL-----ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 130

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 75.0 bits (183), Expect = 5e-17
 Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 20/125 (16%)

Query: 11  IVGAGTAGCVLANRLSLH-HTVLLIEAG-------------------DFPSFWSNIPLTS 50
           ++G+G  G V A RL+       ++E G                   D  S W       
Sbjct: 12  VIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQ 71

Query: 51  PILQRSEHDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG 110
           P+                      + +     +G+ +GG   +N       +   FE   
Sbjct: 72  PVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL 131

Query: 111 PWFDY 115
           P  D 
Sbjct: 132 PSVDS 136

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 74.6 bits (182), Expect = 7e-17
 Identities = 15/127 (11%), Positives = 30/127 (23%), Gaps = 6/127 (4%)

Query: 11  IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQAN 69
           IVG+G  GC  A  L    + V + + G+  S           ++  ++  ++    Q  
Sbjct: 9   IVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQ 68

Query: 70  SSGGLKNNVSFWPRGKVLGGSGQINLL-----NHYDGRPEDFEAWGPWFDYGNVSKVLGH 124
                    +                      N       +          G +S     
Sbjct: 69  LMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTC 128

Query: 125 IIGYDRK 131
                 +
Sbjct: 129 ATPRFDR 135

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 66.2 bits (160), Expect = 6e-14
 Identities = 20/129 (15%), Positives = 37/129 (28%), Gaps = 21/129 (16%)

Query: 11  IVGAGTAGCVLANRLSLH-HTVLLIEAG-DFPSFWSNIPLTSPILQRSE----------- 57
           ++G G    V A RL       L++E G  +     +  +   +L   +           
Sbjct: 7   VIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEA 66

Query: 58  --------HDWQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAW 109
                           P A     +  +      G+ +GG   +N     + +   FE  
Sbjct: 67  PLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEI 126

Query: 110 GPWFDYGNV 118
            P  D   +
Sbjct: 127 LPRVDSSEM 135

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 60.8 bits (146), Expect = 5e-12
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 11  IVGAGTAGCVLANRLSLH-HTVLLIEAGDFPSFWSNIPLTSPI-----LQRSEHDWQYET 64
           IVGAG  G + A+RLS     VLL+E G   +  +     +P      L + +    +E+
Sbjct: 7   IVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFES 66

Query: 65  APQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWF 113
               +S+            G ++GG   +N   ++     DF +   W 
Sbjct: 67  -LFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWP 114

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.7 bits (91), Expect = 7e-05
 Identities = 18/142 (12%), Positives = 30/142 (21%), Gaps = 5/142 (3%)

Query: 11  IVGAGTAGCVLANRLSLH--HTVLLIEAGDFPS-FWSNIPLTSPILQRSEHDWQYETAPQ 67
           I GAG  G   A  L       V L+E+          I +    ++             
Sbjct: 6   IAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAA 65

Query: 68  ANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIG 127
              +            G  +    +     +   +               V + LG    
Sbjct: 66  T--AIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAV 123

Query: 128 YDRKTNVGNNVEDFPVRVSLSD 149
                       D  V +   D
Sbjct: 124 RTGLGVERIEERDGRVLIGARD 145

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 9e-05
 Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 3/116 (2%)

Query: 1   MPTEYLSLENIVGAGTAGCVLANRLS-LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHD 59
           + T+Y  +  ++G G   C+L+  LS     VL I+  D     +     S + ++ + +
Sbjct: 2   IDTDYDVI--VLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQN 59

Query: 60  WQYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWFDY 115
              +   ++        NV   P+  +  G     L++    R  DF+     + +
Sbjct: 60  PISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVF 115

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 11 IVGAGTAGCVLANRLS--LHHTVLLIEAGDFPS--FWSNIPLTSPILQRSEHDW 60
          +VGAG+AG   A  +S   +  V +IE    P    W    L S ++ R     
Sbjct: 38 VVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHL 91

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFP 40
          ++G G   C+L+  +S     VL ++   + 
Sbjct: 11 VLGTGLTECILSGIMSVNGKKVLHMDRNPYY 41

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
          IVG+G  G V AN L      VL+IE  +  
Sbjct: 6  IVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 37.1 bits (85), Expect = 6e-04
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
          IVGAG +G V+  +L+   H V +I+  D  
Sbjct: 7  IVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 37

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 1/71 (1%)

Query: 11 IVGAGTAGCVLANRLS-LHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQAN 69
           +G G+ G    NR +       LIEA +      N+      +       +        
Sbjct: 7  AIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGP 66

Query: 70 SSGGLKNNVSF 80
            G       F
Sbjct: 67 DYGFDTTINKF 77

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)

Query: 11 IVGAGTAGCVLANRLSLH-HTVLLIEAGDFP 40
          +VG   +G   A  L      V + E    P
Sbjct: 9  VVGGSISGLTAALMLRDAGVDVDVYERSPQP 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.96
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.96
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.93
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.91
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.71
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.2
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.18
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.81
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.81
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.78
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.78
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.78
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.77
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.75
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.74
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.71
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.7
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.7
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.68
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.67
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.66
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.66
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.65
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.62
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.61
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.61
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.6
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.59
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.56
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.55
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.53
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.53
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.53
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.52
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.51
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.5
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.48
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.47
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.43
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.43
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.42
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.36
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.34
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.32
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.32
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.3
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.29
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.27
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.26
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.23
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.18
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.16
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.15
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.12
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.96
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.96
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.92
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.76
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.73
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.6
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.59
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.53
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.39
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.32
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.31
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.3
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.24
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.19
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.17
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.14
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.14
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.13
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.09
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.99
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.93
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.79
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.77
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.77
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.63
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.63
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.61
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.46
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.42
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.4
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.4
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.39
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.35
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.32
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.31
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.22
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.04
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.7
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	94.91
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.84
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.76
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	94.58
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.56
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.25
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.07
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.05
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	93.91
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	93.84
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.49
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.48
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.4
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	92.84
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.26
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	91.62
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	91.53
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	91.45
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.89
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.71
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.21
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	89.64
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.93
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	88.91
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	88.73
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	88.71
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	88.7
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	88.55
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.34
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	88.31
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	87.88
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	87.75
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	87.68
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	87.29
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	87.28
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	86.95
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	86.5
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	86.45
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.35
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	86.27
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	86.25
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	85.97
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	85.97
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	85.89
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	85.87
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	85.84
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	85.74
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	85.71
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	85.65
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	85.44
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	84.99
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	84.73
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	84.67
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	84.4
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	84.36
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	83.37
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	83.0
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	82.71
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	82.33
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	82.1
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	81.76
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	81.57
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	81.5
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	81.31
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	80.99

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=9.3e-38  Score=264.22  Aligned_cols=165  Identities=21%  Similarity=0.182  Sum_probs=139.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCCCC---CCCCCCCcccccCCCCCCccccCCCCCcCCCCCCCee
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFPSF---WSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVS   79 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~~~---~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~   79 (177)
                      .+|||||||||+|||++|+||||++  +|||||+|+....   ..+.|..+..++.++++|.|.+.++.     .+++.+
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~~~~-----~~~r~~   90 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-----TNNQTA   90 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-----TTSCCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCccccCcC-----CCCcee
Confidence            4699999999999999999999987  9999999986432   22344444445567899999988764     578899


Q ss_pred             ecccceeecCCcccccccccCCChhHHhhhC-----CCCCCchHHHHHHHHhcCCCCC----------CCCCCcccccee
Q psy2463          80 FWPRGKVLGGSGQINLLNHYDGRPEDFEAWG-----PWFDYGNVSKVLGHIIGYDRKT----------NVGNNVEDFPVR  144 (177)
Q Consensus        80 ~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~-----~~W~~~~l~pyf~~~E~~~~~~----------~~~~~g~~Gpv~  144 (177)
                      .+++|++|||||+||+|+|+|+.+.|||.|+     ++|+|++|+|||+|+|++..+.          +...|+..+|++
T Consensus        91 ~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~~~  170 (385)
T d1cf3a1          91 LIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVH  170 (385)
T ss_dssp             EECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSEE
T ss_pred             eecccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCCcccccccccccccccCCccccc
Confidence            9999999999999999999999999999997     6899999999999999987652          234688999999


Q ss_pred             ecCCC---CCCchhHHHHHHHHHcCCcCCCccC
Q psy2463         145 VSLSD---TATPGLTSTIPAIVKSKHYLPKLYH  174 (177)
Q Consensus       145 v~~~~---~~~p~~~~~~~a~~~~G~~~~~~~~  174 (177)
                      ++...   ...|+.+.|.++++++|++...++.
T Consensus       171 ~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n  203 (385)
T d1cf3a1         171 AGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFG  203 (385)
T ss_dssp             EBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTT
T ss_pred             ccccccccccCHHHHHHHHHHHHcCCCCcCCcc
Confidence            98653   5578999999999999999877654

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=1.3e-37  Score=264.22  Aligned_cols=163  Identities=20%  Similarity=0.204  Sum_probs=139.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCCCC---CCCCCCCcccccCCCCCCccccCCCCCcCCCCCCCee
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFPSF---WSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVS   79 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~~~---~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~   79 (177)
                      .+|||||||||+|||++|+||||++  +|||||||+....   ..++|..+...+.+.++|+|.++|+      ++++.+
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~------~~~r~~   96 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPL------INNRTN   96 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCCC------TTSCCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeeec------CCCcEe
Confidence            4799999999999999999999998  9999999986432   2345655555667789999999987      367889


Q ss_pred             ecccceeecCCcccccccccCCChhHHhhhC-----CCCCCchHHHHHHHHhcCCCCC----------CCCCCcccccee
Q psy2463          80 FWPRGKVLGGSGQINLLNHYDGRPEDFEAWG-----PWFDYGNVSKVLGHIIGYDRKT----------NVGNNVEDFPVR  144 (177)
Q Consensus        80 ~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~-----~~W~~~~l~pyf~~~E~~~~~~----------~~~~~g~~Gpv~  144 (177)
                      .+++|++|||||+||+|+|+|+++.||+.|.     ++|+|++++|||+|+|++..+.          +...|+..||++
T Consensus        97 ~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~~~  176 (391)
T d1gpea1          97 NIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQ  176 (391)
T ss_dssp             EECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEE
T ss_pred             eeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCccccccCCCCccc
Confidence            9999999999999999999999999999996     6899999999999999987642          234689999999


Q ss_pred             ecCCC---CCCchhHHHHHHHHHcCCcCCCcc
Q psy2463         145 VSLSD---TATPGLTSTIPAIVKSKHYLPKLY  173 (177)
Q Consensus       145 v~~~~---~~~p~~~~~~~a~~~~G~~~~~~~  173 (177)
                      +..++   ...|+.+.|.++++++|+....+.
T Consensus       177 ~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~~~  208 (391)
T d1gpea1         177 SGARDNGQPWSPIMKALMNTVSALGVPVQQDF  208 (391)
T ss_dssp             EBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCT
T ss_pred             ccccccccccCHHHHHHHHHHHhcCCceeecc
Confidence            98754   557899999999999999887654

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.96  E-value=1.3e-30  Score=218.46  Aligned_cols=150  Identities=18%  Similarity=0.074  Sum_probs=113.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCCCC--C--CCCCCcc-cccC---CCCCCccccCCCCCcCCCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPSFW--S--NIPLTSP-ILQR---SEHDWQYETAPQANSSGGLKN   76 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~~~--~--~~p~~~~-~~~~---~~~~w~~~~~p~~~~~~~~~~   76 (177)
                      .|||||||||+|||++|+||||++ +|||||+|+.....  .  ..|.... ....   ....|.+.+.++..    ..+
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   77 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPF----WWC   77 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCT----TBC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCcc----cCC
Confidence            499999999999999999999999 99999999754321  1  1111100 0011   12345666777765    577


Q ss_pred             CeeecccceeecCCcccccccccCCChhHHhhhCCCC--CCchHHHHHHHHhcCCCCCCCCCCccccceeecCCCCCCch
Q psy2463          77 NVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWGPWF--DYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATPG  154 (177)
Q Consensus        77 ~~~~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~~~W--~~~~l~pyf~~~E~~~~~~~~~~~g~~Gpv~v~~~~~~~p~  154 (177)
                      +.+.+++|++|||||+||+|+|+|+.+.||+.|. +|  +|++++|||+|+|+..+..  ..++.+||..+      .+.
T Consensus        78 ~~~~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~-gwp~~~~~l~py~~~~e~~~~~~--~~~~~~g~~~~------~~~  148 (360)
T d1kdga1          78 KDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV-GWPSSWTNHAPYTSKLSSRLPST--DHPSTDGQRYL------EQS  148 (360)
T ss_dssp             TTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGG-TCCGGGSCCHHHHHHHHHHSCCB--SCCSTTSCCCS------CHH
T ss_pred             ccccccceeeecchhccccccccccchhhheecc-cccccccchhhhhhhhhcccccc--ceecCCCcccc------cch
Confidence            8899999999999999999999999999999985 56  8999999999999987653  24566777654      345


Q ss_pred             hHHHHHHHHHcCCc
Q psy2463         155 LTSTIPAIVKSKHY  168 (177)
Q Consensus       155 ~~~~~~a~~~~G~~  168 (177)
                      ...+.++++++|+.
T Consensus       149 ~~~~~~~~~~~g~~  162 (360)
T d1kdga1         149 FNVVSQLLKGQGYN  162 (360)
T ss_dssp             HHHHHHHHHTTTCE
T ss_pred             hHHHHHHHHHhhcc
Confidence            66777888888764

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.96  E-value=5.4e-31  Score=220.37  Aligned_cols=150  Identities=22%  Similarity=0.199  Sum_probs=109.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCcccccCCCCCCccccCCCCCcCCCCCCCeeeccc
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFPSFWSNIPLTSPILQRSEHDWQYETAPQANSSGGLKNNVSFWPR   83 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~~~   83 (177)
                      +.+|||||||||+|||++|+||||+-+|||||+|+.......++............|.+.+.++..    ..++.+.+++
T Consensus        24 ~~~YD~IIVGsG~aG~vlA~rLae~~kVLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r   99 (351)
T d1ju2a1          24 EGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERF----VSEDGIDNVR   99 (351)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEEE----ECTTSCEEEE
T ss_pred             cCCccEEEECccHHHHHHHHHhcCCCCEEEEecCCCCcCccccccchhhhccCcCCCCCCCccccc----cCCCceeeee
Confidence            446999999999999999999998559999999985431111110000011123445556666654    4677899999


Q ss_pred             ceeecCCcccccccccCCChhHHhhhCCCCCCchHHHHHHHHhcCCCCCCCCCCccccceeecCCCCCCchhHHHHHHHH
Q psy2463          84 GKVLGGSGQINLLNHYDGRPEDFEAWGPWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVRVSLSDTATPGLTSTIPAIV  163 (177)
Q Consensus        84 g~~lGGsS~in~~~~~R~~~~dfd~w~~~W~~~~l~pyf~~~E~~~~~~~~~~~g~~Gpv~v~~~~~~~p~~~~~~~a~~  163 (177)
                      ||+|||||+||+|+|+|+.+.||+.|..+|+|+++.|||+++|.......                ........+.+++.
T Consensus       100 G~~lGGsS~in~~~~~R~~~~dfd~~~~~W~~~~~~p~~~~~e~~~~~~~----------------~~~~~~~~~~~a~~  163 (351)
T d1ju2a1         100 GRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKP----------------NSQSWQSVTKTAFL  163 (351)
T ss_dssp             ECBTTGGGGTSCCEECBCCTTSSTTSSSCCCHHHHHHHHHHHHHHHCBCC----------------CCCHHHHHHHHHHH
T ss_pred             eeecccccccceeeeccCCHHHHhhcccccChhHhCcceeeccccccccc----------------ccccccccccchhh
Confidence            99999999999999999999999999889999999999999997544311                11234455667778


Q ss_pred             HcCCcCCCcc
Q psy2463         164 KSKHYLPKLY  173 (177)
Q Consensus       164 ~~G~~~~~~~  173 (177)
                      ++|+....++
T Consensus       164 ~~g~~~~~~~  173 (351)
T d1ju2a1         164 EAGVHPNHGF  173 (351)
T ss_dssp             HTTCCCEEEE
T ss_pred             hhcccccccc
Confidence            8887665443

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.93  E-value=1.9e-26  Score=191.74  Aligned_cols=161  Identities=12%  Similarity=-0.090  Sum_probs=110.3

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCCCCCCCCCCccc---------c----------cCCCCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPSFWSNIPLTSPI---------L----------QRSEHDW   60 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~~~~~~p~~~~~---------~----------~~~~~~w   60 (177)
                      |.+...+|+||||||++|+++|.|||++| +|||||+|.+.......+..+..         .          ....+.|
T Consensus         2 ~~~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (370)
T d3coxa1           2 LADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGI   81 (370)
T ss_dssp             CCTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSC
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccccccccccccccccccccccccccccccccccccc
Confidence            66778899999999999999999999999 99999999754310000000000         0          0011233


Q ss_pred             ccccCCCCCcCCCCCCCeeecccceeecCCcccccccccCCChhHHhhhC-CCCCCchHHHHHHHHhcCCCCCCCCCCcc
Q psy2463          61 QYETAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG-PWFDYGNVSKVLGHIIGYDRKTNVGNNVE  139 (177)
Q Consensus        61 ~~~~~p~~~~~~~~~~~~~~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~-~~W~~~~l~pyf~~~E~~~~~~~~~~~g~  139 (177)
                      ++...+..........+.+.+.++++|||+|.+|++++.|+.+.||+.|. ..+.+++++|||+++|+.......     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~~~~~~~~~~~y~~~e~~lgv~~~-----  156 (370)
T d3coxa1          82 NKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNI-----  156 (370)
T ss_dssp             CCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCC-----
T ss_pred             CcccccccccccccCCCcceeeeeccccccccccCceeccCCHHHhhcccccCCcHHHHHHHHHHHHHhcCCccc-----
Confidence            33333333221223456678899999999999999999999999999998 334578899999999987664221     


Q ss_pred             ccceeecCCCCCCchhHHHHHHHHHcCCc
Q psy2463         140 DFPVRVSLSDTATPGLTSTIPAIVKSKHY  168 (177)
Q Consensus       140 ~Gpv~v~~~~~~~p~~~~~~~a~~~~G~~  168 (177)
                        |-....+....++.+.|.++++++|+.
T Consensus       157 --~~~~~~~~~~~~~~~~~~~~a~~~g~~  183 (370)
T d3coxa1         157 --DQAWFESTEWYKFARTGRKTAQRSGFT  183 (370)
T ss_dssp             --CHHHHHHCGGGHHHHHHHHHHHHTTCC
T ss_pred             --cCCcccCCCCccHHHHHHHHHHHcCCc
Confidence              111111223357788899999998875

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.91  E-value=1.7e-25  Score=185.48  Aligned_cols=155  Identities=14%  Similarity=0.047  Sum_probs=100.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCCCCC-CCCCCccccc-CCCCCCc--cccC----------------
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPSFWS-NIPLTSPILQ-RSEHDWQ--YETA----------------   65 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~~~~-~~p~~~~~~~-~~~~~w~--~~~~----------------   65 (177)
                      +||||||||+||+++|.||||+| +|||||+|....... ..+.+..... .....|.  ....                
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNID   82 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCBCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCcccc
Confidence            79999999999999999999999 999999997643211 1111100000 0111111  0000                


Q ss_pred             CCCCcCCCCCCCeeecccceeecCCcccccccccCCChhHHhhhC-CCCCCchHHHHHHHHhcCCCCCCCCCCcccccee
Q psy2463          66 PQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG-PWFDYGNVSKVLGHIIGYDRKTNVGNNVEDFPVR  144 (177)
Q Consensus        66 p~~~~~~~~~~~~~~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~-~~W~~~~l~pyf~~~E~~~~~~~~~~~g~~Gpv~  144 (177)
                      +..........+.+.++++++|||+|.+|+++++|+.+.||+.|. ..|.+++|+|||+++|+.......       |-.
T Consensus        83 ~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~~~~~~~~l~pyy~~ae~~l~~~~~-------~~~  155 (367)
T d1n4wa1          83 PYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHI-------DTK  155 (367)
T ss_dssp             CCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCC-------CHH
T ss_pred             cccCccccccCCccceeeEEecCCCCceecceeeccChhHhhccccccCcHHHHHHHHHHHHHHhCCCCC-------CCC
Confidence            000000012345677899999999999999999999999999987 334578999999999998765321       111


Q ss_pred             ecCCCCCCchhHHHHHHHHHcCCc
Q psy2463         145 VSLSDTATPGLTSTIPAIVKSKHY  168 (177)
Q Consensus       145 v~~~~~~~p~~~~~~~a~~~~G~~  168 (177)
                      ........+..+.+.++++++|+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~g~~  179 (367)
T d1n4wa1         156 WFEDTEWYKFARVSREQAGKAGLG  179 (367)
T ss_dssp             HHHHCGGGHHHHHHHHHHHHTTCC
T ss_pred             ccccCCCChHHHHHHHHHHHcCcc
Confidence            111122235667777788877764

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.71  E-value=2.9e-18  Score=140.26  Aligned_cols=125  Identities=17%  Similarity=0.119  Sum_probs=78.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCCCC--CCCCCCcccccCC------------------------
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPSFW--SNIPLTSPILQRS------------------------   56 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~~~--~~~p~~~~~~~~~------------------------   56 (177)
                      +.+|||||||||+||+++|+|||++| +|||||+|+.....  ...+.........                        
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVV   81 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCCCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccchhhccccccccccccccccccccccccccccccc
Confidence            56799999999999999999999999 99999999865321  1111100000000                        


Q ss_pred             ----CCCCccc-----cCCCCCcCCCCCCCeeecccceeecCCcccccccccCCChhHHhhhC--------CCC--CCch
Q psy2463          57 ----EHDWQYE-----TAPQANSSGGLKNNVSFWPRGKVLGGSGQINLLNHYDGRPEDFEAWG--------PWF--DYGN  117 (177)
Q Consensus        57 ----~~~w~~~-----~~p~~~~~~~~~~~~~~~~~g~~lGGsS~in~~~~~R~~~~dfd~w~--------~~W--~~~~  117 (177)
                          ...|...     .......  ........+.+++.+||+|.+|.+++.|+.+.||+.+.        ..|  .|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~  159 (379)
T d2f5va1          82 DTLSPTSWQASTFFVRNGSNPEQ--DPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTK  159 (379)
T ss_dssp             CCSCTTSCCCSSCCCCTTCCTTC--CTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCccCCCeEeccCCCchh--hhhhccccchhhhcCCCCccccccEeccCCHHHhhhccccCCCccCCcCccchhh
Confidence                0000000     0000000  00111123456789999999999999999999998765        124  6778


Q ss_pred             HHHHHHHHhcCCC
Q psy2463         118 VSKVLGHIIGYDR  130 (177)
Q Consensus       118 l~pyf~~~E~~~~  130 (177)
                      +++||.+.+....
T Consensus       160 ~~~~~~~~~~~~~  172 (379)
T d2f5va1         160 AESYFQTGTDQFK  172 (379)
T ss_dssp             HHHHHTEESCTTT
T ss_pred             hhhhhhHHHHHHH
Confidence            8888877665433

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=8.7e-12  Score=93.35  Aligned_cols=38  Identities=26%  Similarity=0.359  Sum_probs=34.3

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +..+||+||||||.+|+++|.+||++| +|||||+....
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   40 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            356799999999999999999999999 99999997643

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.81  E-value=1.4e-09  Score=90.46  Aligned_cols=35  Identities=37%  Similarity=0.375  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHh------CC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSL------HH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~------~g-~VLvLEaG~~~   40 (177)
                      +|||||||||+||+++|.+||+      .| +|||||++...
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            6999999999999999999997      78 99999999754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.7e-09  Score=83.42  Aligned_cols=39  Identities=33%  Similarity=0.398  Sum_probs=35.9

Q ss_pred             CCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           2 PTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         2 ~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      |++.+.+|||||||.||+++|.+|+++| +|+|||+....
T Consensus         1 p~~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~   40 (449)
T d2dw4a2           1 PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV   40 (449)
T ss_dssp             CSSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            6788899999999999999999999999 99999997653

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.78  E-value=2.1e-09  Score=83.78  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=32.4

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +..||+||||||.+|+.+|.+|++.| +|+|||++.
T Consensus         2 ~~~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           2 KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            34599999999999999999999999 999999975

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.78  E-value=2.1e-09  Score=82.70  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +||+||||+|++|+.+|.+|++.| +|+|||++...
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~   37 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL   37 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            599999999999999999999999 99999998754

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.78  E-value=2.1e-09  Score=83.73  Aligned_cols=37  Identities=30%  Similarity=0.350  Sum_probs=34.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +..+|+||||+|+||+.+|.+|++.| +|+|||+++..
T Consensus         2 ~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            45699999999999999999999999 99999998754

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.77  E-value=2.1e-09  Score=81.13  Aligned_cols=36  Identities=25%  Similarity=0.126  Sum_probs=33.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +.+||+||||+|+||+++|.+|++.| +|+|||....
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~   37 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG   37 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccC
Confidence            35799999999999999999999999 9999998754

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=3e-09  Score=81.40  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=34.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +++||+||||||+||..+|.++|+.| +|+|||.+...
T Consensus         1 ~~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           1 SYDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            46899999999999999999999999 99999987654

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.74  E-value=3.4e-09  Score=84.24  Aligned_cols=37  Identities=27%  Similarity=0.187  Sum_probs=33.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..+||+||||+|.+|+.+|.+|++.| +|+|||+++..
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~   51 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI   51 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            35799999999999999999999999 99999998754

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.71  E-value=4.3e-09  Score=82.35  Aligned_cols=34  Identities=29%  Similarity=0.291  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .|||||||+|.+|+.+|.+|++.| +|+|||+...
T Consensus         3 ~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~   37 (281)
T d2gf3a1           3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (281)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            599999999999999999999999 9999999754

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=4.3e-09  Score=79.94  Aligned_cols=36  Identities=22%  Similarity=0.161  Sum_probs=33.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +.+||+||||+|+||+.+|.+|++.| +|+|||+...
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            56799999999999999999999999 9999998654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=5.5e-09  Score=79.06  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +.||+||||+|+||..+|.+|++.| +|+|||++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            4699999999999999999999999 999999864

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.68  E-value=5.8e-09  Score=83.62  Aligned_cols=38  Identities=16%  Similarity=0.152  Sum_probs=33.8

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      |+. +.|||||||+|+||+.+|.+|++.| +|+|||++..
T Consensus         1 m~~-~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~   39 (336)
T d2bs2a2           1 MKV-QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPV   39 (336)
T ss_dssp             CCE-EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCG
T ss_pred             CCc-eecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            444 4589999999999999999999999 9999999754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=5.9e-09  Score=83.55  Aligned_cols=34  Identities=38%  Similarity=0.380  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +|+||||||.+|+++|.+|++.| +|+|||+-...
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~i   36 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCc
Confidence            79999999999999999999999 99999995543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.66  E-value=7e-09  Score=79.30  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ||+|||||++|+++|.+|++.| +|+|||+...
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            7999999999999999999999 9999999654

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.66  E-value=7.2e-09  Score=83.12  Aligned_cols=37  Identities=27%  Similarity=0.300  Sum_probs=33.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +.++||||||+|++|+.+|.+|++.| +|+|||+++..
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~   58 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP   58 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            44799999999999999999999999 99999998653

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.65  E-value=8.9e-09  Score=77.75  Aligned_cols=35  Identities=23%  Similarity=0.150  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+||+||||+|+||+.+|..+++.| +|+|||++..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~   37 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA   37 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            4699999999999999999999999 9999998654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.62  E-value=1.3e-08  Score=77.92  Aligned_cols=36  Identities=17%  Similarity=0.094  Sum_probs=33.3

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +..||+||||+|+||+.+|..|++.| +|+|||+.+.
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~   40 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            45799999999999999999999999 9999998764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.3e-08  Score=80.02  Aligned_cols=32  Identities=31%  Similarity=0.347  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ||||||||.+|+++|.+|++.| +|+|||+...
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~   33 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDR   33 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            8999999999999999999999 9999998654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.61  E-value=1.4e-08  Score=75.33  Aligned_cols=33  Identities=42%  Similarity=0.525  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-c-EEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-T-VLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~~   39 (177)
                      .||||||||+||+++|.+|++.| + |+|||+...
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            48999999999999999999999 5 999999754

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.7e-08  Score=76.31  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +||+||||+|+||+.+|.++++.| +|+|||.+.
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            699999999999999999999999 999999865

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.59  E-value=1.9e-08  Score=75.73  Aligned_cols=35  Identities=31%  Similarity=0.425  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+||+||||+|+||+.+|..+++.| +|+|||++..
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~   37 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL   37 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            4699999999999999999999999 9999999763

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.56  E-value=2.4e-08  Score=78.61  Aligned_cols=36  Identities=33%  Similarity=0.360  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-C-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH-H-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~-g-~VLvLEaG~~~   40 (177)
                      .++|+||||+|++|+.+|.+||+. | +|+|||+.+..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~   69 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   69 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCC
Confidence            369999999999999999999985 8 99999998643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.55  E-value=3.4e-08  Score=75.01  Aligned_cols=38  Identities=16%  Similarity=0.126  Sum_probs=33.3

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      |-++.+.+|||||+|.+|+.+|.+|++.| +|+|||++.
T Consensus         1 ~~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           1 LMMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            33455568999999999999999999999 999999965

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.53  E-value=2.3e-08  Score=80.18  Aligned_cols=37  Identities=24%  Similarity=0.317  Sum_probs=34.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      ..++||||||+|.+|+.+|.+|++.| +|+|||+++..
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~   54 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS   54 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            45799999999999999999999999 99999998754

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.53  E-value=3.2e-08  Score=77.19  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .||+||||+|+||..+|.++|+.| +|+|||++.
T Consensus         1 vyDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           1 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            399999999999999999999999 999999864

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.53  E-value=2.8e-08  Score=77.43  Aligned_cols=37  Identities=35%  Similarity=0.280  Sum_probs=32.9

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           3 TEYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         3 ~~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ....-+|||||||++|+++|.+|++.| +|+|||+...
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            344568999999999999999999999 9999999754

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=2.3e-08  Score=80.67  Aligned_cols=36  Identities=25%  Similarity=0.105  Sum_probs=33.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .+|||||||+|.||+.+|.++++.| +|+|||.++..
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~   42 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            3799999999999999999999999 99999997653

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=3.2e-08  Score=78.75  Aligned_cols=37  Identities=35%  Similarity=0.470  Sum_probs=32.6

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCcEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHHTVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~~   40 (177)
                      +.+||+||||+|+||+.+|.++++.++|+|||+++..
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g~V~llEK~~~~   41 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVT   41 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTSCEEEECSSCTT
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCCCEEEEECCCCC
Confidence            3579999999999999999998876699999998753

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.50  E-value=3.9e-08  Score=74.82  Aligned_cols=31  Identities=32%  Similarity=0.509  Sum_probs=29.4

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      |||||||+||+++|.+|++.| +|+|||+...
T Consensus         4 V~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~   35 (373)
T d1seza1           4 VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   35 (373)
T ss_dssp             EEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            899999999999999999999 9999999754

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.48  E-value=4.5e-08  Score=74.18  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=32.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..+||+||||+|+||+.+|.++++.| +|+|+|.+.
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            45799999999999999999999999 999999874

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=4.9e-08  Score=71.59  Aligned_cols=31  Identities=26%  Similarity=0.143  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      .||+||||||++|+.+|..+++.| +|+|||.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~   32 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE   32 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEE
Confidence            389999999999999999999999 9999996

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.43  E-value=9.1e-08  Score=72.45  Aligned_cols=34  Identities=21%  Similarity=0.148  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      +.||+||||+|+||..+|.++|+.+  +|+|+|...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            5699999999999999999999987  799999764

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.43  E-value=7.8e-08  Score=77.32  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHh----CC-cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSL----HH-TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~----~g-~VLvLEaG~~   39 (177)
                      ++|+||||+|+||+.+|.+||+    .| +|+|||++..
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~   59 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   59 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCC
Confidence            6899999999999999999986    57 9999999764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.42  E-value=8.5e-08  Score=75.59  Aligned_cols=33  Identities=27%  Similarity=0.438  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      +.||||||+|.+|+.+|.+|++.|  +|+|||++.
T Consensus         1 t~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           1 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            359999999999999999999998  599999985

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.36  E-value=1.5e-07  Score=73.31  Aligned_cols=31  Identities=32%  Similarity=0.237  Sum_probs=29.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      .||+||||+|+||+.+|...|+.+ +|||||.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~   33 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQ   33 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEe
Confidence            599999999999999999999999 9999986

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.34  E-value=1.2e-07  Score=72.65  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=31.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ++||+||||+|+||..+|.++|+.+  +|+|+|....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            5799999999999999999999977  6999998764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.32  E-value=1.6e-07  Score=73.33  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ++||+|||+|++|+++|..|++.| +|+|||+.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            368999999999999999999999 999999975

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.32  E-value=2.8e-07  Score=71.78  Aligned_cols=36  Identities=19%  Similarity=0.174  Sum_probs=33.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+||+||||+|++|+.+|..|++.| +|+|||..+.
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~   76 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF   76 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCc
Confidence            45799999999999999999999999 9999998765

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.30  E-value=1.9e-07  Score=74.09  Aligned_cols=37  Identities=35%  Similarity=0.311  Sum_probs=32.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHh-----CC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSL-----HH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~-----~g-~VLvLEaG~~~   40 (177)
                      +..|||||||||++|+++|.-||+     .| +|+|||+-+..
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            346999999999999999999984     68 99999997643

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.29  E-value=3.1e-07  Score=70.39  Aligned_cols=34  Identities=29%  Similarity=0.174  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~~   40 (177)
                      .||||||||+||+++|..|++.|  +|+|+|+.+..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            58999999999999999999999  79999997654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.27  E-value=3e-07  Score=74.01  Aligned_cols=33  Identities=33%  Similarity=0.435  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -+||||||.+|+++|.+|++.| +|+|||+....
T Consensus         4 KI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~i   37 (314)
T d2bi7a1           4 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   37 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            4899999999999999999999 99999997654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.26  E-value=3.4e-07  Score=73.35  Aligned_cols=35  Identities=29%  Similarity=0.167  Sum_probs=32.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+|+||||+|++|+++|.+|.+.| +|+|||+++.
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            4689999999999999999999999 9999999765

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=3.5e-07  Score=73.22  Aligned_cols=35  Identities=29%  Similarity=0.205  Sum_probs=31.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~   39 (177)
                      +++|+||||+|.||+.+|.++++.  + +|+|||.+..
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~   41 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP   41 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence            469999999999999999999986  4 8999998763

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=5.2e-07  Score=66.74  Aligned_cols=36  Identities=25%  Similarity=0.173  Sum_probs=32.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .+..|++|||+|++|+.+|..|++.+ +|+|||+...
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc
Confidence            45689999999999999999999999 9999998654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.16  E-value=7.4e-07  Score=68.08  Aligned_cols=33  Identities=21%  Similarity=0.099  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      -.|+|||+|++|+++|..|++.| +|+|||+.+.
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            45999999999999999999999 9999998654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=3.7e-07  Score=72.78  Aligned_cols=37  Identities=32%  Similarity=0.329  Sum_probs=32.8

Q ss_pred             CccccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      ...+|++|||+|++|+.+|..|++.  + +|+|+|+....
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            4568999999999999999999974  6 99999998654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.12  E-value=8.2e-07  Score=66.02  Aligned_cols=35  Identities=26%  Similarity=0.087  Sum_probs=32.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..+|+||||||++|+.+|..|++.+ +|+|||....
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecc
Confidence            4689999999999999999999999 9999997754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.96  E-value=3.8e-06  Score=64.10  Aligned_cols=37  Identities=30%  Similarity=0.235  Sum_probs=33.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +..-+++|||+|+||+.+|.+|++.| +|.|+|+....
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            45679999999999999999999999 99999998765

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=4.5e-06  Score=62.20  Aligned_cols=37  Identities=27%  Similarity=0.206  Sum_probs=33.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .....++|||||+||+.+|..|++.| +|.|+|+-+..
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            34568999999999999999999999 99999997654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.92  E-value=5e-06  Score=60.82  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-c-EEEEecCCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-T-VLLIEAGDFPS   41 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~-VLvLEaG~~~~   41 (177)
                      --++|||||++|+.+|..|++.| + |.|+|+.....
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g   41 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG   41 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence            35899999999999999999999 5 99999987653

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.76  E-value=1.3e-05  Score=64.02  Aligned_cols=38  Identities=37%  Similarity=0.463  Sum_probs=31.4

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      ||.-+  .|+|||||++|+++|..|++.+   +|.|+|+....
T Consensus         1 m~~~K--rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~i   41 (335)
T d2gv8a1           1 LPTIR--KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP   41 (335)
T ss_dssp             CCSCC--EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSS
T ss_pred             CCCCC--eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            55532  3999999999999999998765   89999998653

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.73  E-value=1.1e-05  Score=60.90  Aligned_cols=34  Identities=32%  Similarity=0.376  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--C-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLH--H-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~--g-~VLvLEaG~~~   40 (177)
                      .-++|||||+||+.+|..|+++  + +|.|+|+.+..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4689999999999999999875  4 89999999764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.60  E-value=5.2e-06  Score=62.25  Aligned_cols=29  Identities=24%  Similarity=0.156  Sum_probs=26.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      ++|||+|.+|+.+|.+|+++| +|+++|+.
T Consensus         3 V~VIGaGi~GlstA~~L~~~G~~v~v~e~~   32 (246)
T d1kifa1           3 VVVIGAGVIGLSTALCIHERYHSVLQPLDV   32 (246)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred             EEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence            899999999999999999999 88888874

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.59  E-value=2.3e-05  Score=59.61  Aligned_cols=32  Identities=28%  Similarity=0.340  Sum_probs=27.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC----cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH----TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g----~VLvLEaG~   38 (177)
                      .++||||+|+||..+|.++|+.+    +|+|+|++.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            47999999999999998877644    799999865

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.53  E-value=2.3e-05  Score=58.64  Aligned_cols=34  Identities=26%  Similarity=0.252  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--------cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--------TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--------~VLvLEaG~~~   40 (177)
                      +.+.|||||+||+.+|..|++.|        +|.|+|+.+..
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            57999999999999999998865        59999998754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.39  E-value=9.1e-05  Score=50.52  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      -.++|||+|..|+-+|..|++.| +|.|+|+++..-
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il   58 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL   58 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceec
Confidence            36999999999999999999999 999999998753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.32  E-value=9e-05  Score=51.06  Aligned_cols=33  Identities=33%  Similarity=0.360  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +++|||||..|+-+|..|++.| +|.|+|+++..
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            5899999999999999999999 99999998764

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.31  E-value=0.00014  Score=50.27  Aligned_cols=34  Identities=32%  Similarity=0.235  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.+ +|.|+|+++..
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            46899999999999999999999 99999999875

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.30  E-value=9.2e-05  Score=52.48  Aligned_cols=32  Identities=34%  Similarity=0.424  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~   39 (177)
                      .+||||+|.+|+.+|.+|.+.+   +|.|||+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            4899999999999999999965   7999998764

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00014  Score=54.54  Aligned_cols=36  Identities=19%  Similarity=0.192  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      ..+++||||+|.+|+.+|.+|.+.+   +|++|++-+..
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            4689999999999999999998865   79999876543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00019  Score=48.94  Aligned_cols=34  Identities=29%  Similarity=0.270  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      -++|||+|..|+-+|..|++.| +|.|+|+++...
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l   57 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL   57 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             EEEEECCChhhHHHHHHhhccccEEEEEeecchhh
Confidence            4899999999999999999999 999999998653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.17  E-value=0.0002  Score=50.06  Aligned_cols=35  Identities=17%  Similarity=0.174  Sum_probs=32.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      -.++|||+|..|+-+|..|++.| +|.|+|+++..-
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL   71 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence            46999999999999999999999 999999998753

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.14  E-value=0.0002  Score=51.34  Aligned_cols=34  Identities=29%  Similarity=0.217  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      =+++|||||++|+-+|..|++.+ +|.|+|.....
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            37999999999999999999998 88777777654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.14  E-value=0.00027  Score=48.74  Aligned_cols=34  Identities=24%  Similarity=0.297  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|++.| +|.|+|+.+..
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            36899999999999999999999 99999998764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.13  E-value=0.00019  Score=48.78  Aligned_cols=34  Identities=24%  Similarity=0.152  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      .++|||+|..|+-+|.-|++.| +|.|+|+++..-
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il   57 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL   57 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence            5999999999999999999999 999999998653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.09  E-value=0.00026  Score=48.45  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|.-|++.| +|.|+|++...
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             EEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            4899999999999999999999 99999999864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.99  E-value=0.00025  Score=51.26  Aligned_cols=33  Identities=24%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      .++|||+|.+|+-+|..|.+.+ +|.+++.+...
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~   38 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA   38 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSC
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEEEEeccc
Confidence            4999999999999999999988 77777766543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00047  Score=47.52  Aligned_cols=34  Identities=29%  Similarity=0.168  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      .++|||+|..|+-+|..|++.| +|.|+|++...-
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL   58 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             EEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc
Confidence            5899999999999999999999 999999998653

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.0007  Score=46.45  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      .++|||+|..|+-+|.-|++.| +|.|+|+.+..-
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l   59 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG   59 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             eEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence            5899999999999999999999 999999988753

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.77  E-value=0.00083  Score=45.51  Aligned_cols=34  Identities=9%  Similarity=0.059  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.++|||+|..|+-+|..|+..+ +|.++|+++..
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            36899999999999999999999 99999998764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.77  E-value=0.00083  Score=45.83  Aligned_cols=35  Identities=26%  Similarity=0.221  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      -.++|||+|..|+-+|.-|++.| +|.++|+....-
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll   58 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL   58 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC
Confidence            35899999999999999999999 999999998653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.63  E-value=0.00085  Score=49.00  Aligned_cols=32  Identities=25%  Similarity=0.364  Sum_probs=28.7

Q ss_pred             EEEECCChHHHHHHHHHHhCC---cEEEEecCCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH---TVLLIEAGDFP   40 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~~   40 (177)
                      ++|||+|.+|+-+|..|.+.+   +|.++|++...
T Consensus         3 VvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            899999999999999999864   79999998754

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.63  E-value=0.00098  Score=56.37  Aligned_cols=38  Identities=16%  Similarity=0.167  Sum_probs=34.4

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      ..+||+||+|.|..=|++|+.||..| +||-|++-..+.
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYG   42 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYG   42 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCC
Confidence            45699999999999999999999999 999999977653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.61  E-value=0.00097  Score=47.03  Aligned_cols=33  Identities=36%  Similarity=0.463  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCcEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHHTVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g~VLvLEaG~~~   40 (177)
                      -++|||+|.+|+-+|..|++..+|.|+|+.+..
T Consensus         2 rVvIIGgG~~G~e~A~~l~~~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHcCCCEEEEeccccc
Confidence            479999999999999999863399999987643

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.46  E-value=0.0012  Score=45.52  Aligned_cols=34  Identities=21%  Similarity=0.118  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      .++|||+|..|+-+|.-|++.| +|.++|+++..-
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il   62 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM   62 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             eEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc
Confidence            5899999999999999999999 999999998653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0017  Score=45.64  Aligned_cols=32  Identities=19%  Similarity=0.155  Sum_probs=29.4

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      +.|||+|.-|+.+|.+|++.| +|.++.+....
T Consensus         3 I~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           3 ITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            789999999999999999999 99999987753

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.40  E-value=0.0015  Score=44.18  Aligned_cols=33  Identities=21%  Similarity=0.204  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHh---CC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSL---HH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~---~g-~VLvLEaG~~~   40 (177)
                      .++|||||..|+-+|.-|++   .+ +|.|+|++...
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            68999999999999965554   45 79999998865

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.40  E-value=0.0015  Score=46.79  Aligned_cols=30  Identities=27%  Similarity=0.429  Sum_probs=28.1

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +.|||+|..|+.+|..|+++| +|.++++.+
T Consensus         4 iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999999999999999999 999999864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.39  E-value=0.0014  Score=46.33  Aligned_cols=32  Identities=13%  Similarity=-0.074  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      -++|||+|-.|..+|.+|++.| +|.|+++-..
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            3789999999999999999999 9999998653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.35  E-value=0.0017  Score=44.54  Aligned_cols=32  Identities=19%  Similarity=0.281  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .|||||.|.-|..+|.+|.+.| .|+++|.-+.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            4899999999999999999999 9999998653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.32  E-value=0.0021  Score=43.94  Aligned_cols=30  Identities=20%  Similarity=0.063  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .++|||+|..|+-+|.-|++-| +|.|||+.
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            5899999999999999999999 99999864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.31  E-value=0.0014  Score=44.89  Aligned_cols=34  Identities=18%  Similarity=0.130  Sum_probs=31.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      .++|||+|.-|+-+|.-|++.| +|.|||+++..-
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            5889999999999999999999 999999998764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.22  E-value=0.0025  Score=43.81  Aligned_cols=31  Identities=32%  Similarity=0.404  Sum_probs=28.5

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      +||+|.|.-|..+|.+|.+.| .|++||.-++
T Consensus         3 IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           3 IIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            789999999999999999999 9999998653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.04  E-value=0.0032  Score=42.39  Aligned_cols=35  Identities=23%  Similarity=0.158  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHh---CC-cEEEEecCCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSL---HH-TVLLIEAGDFPS   41 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~---~g-~VLvLEaG~~~~   41 (177)
                      -.++|||+|..|+-+|.-|++   .+ +|-++|+++..-
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il   57 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL   57 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccccc
Confidence            358999999999999976554   47 999999987653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.005  Score=42.67  Aligned_cols=33  Identities=24%  Similarity=0.185  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHh----CC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSL----HH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~----~g-~VLvLEaG~~~   40 (177)
                      .++|||+|..|+-+|..|++    .+ +|.+||+....
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            58999999999999999975    36 99999998764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.019  Score=36.89  Aligned_cols=33  Identities=18%  Similarity=0.188  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -+.|+|.|-+|..+|..|++.| +|.+.|.....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            4899999999999999999999 99999876543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.84  E-value=0.011  Score=39.04  Aligned_cols=30  Identities=13%  Similarity=0.101  Sum_probs=25.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      -+++|||+|.+|.-+|..|++.. +|.++-+
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~   63 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSL   63 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEEC
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEe
Confidence            37999999999999999999987 7665543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.014  Score=42.76  Aligned_cols=30  Identities=23%  Similarity=0.447  Sum_probs=27.6

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +.|||+|.-|.-+|..++.+| .|.++|.-+
T Consensus         7 vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           7 VTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            789999999999999999999 999998654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.58  E-value=0.027  Score=39.14  Aligned_cols=34  Identities=15%  Similarity=0.094  Sum_probs=29.3

Q ss_pred             ccEEEE--CCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIV--GAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVV--G~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      -.+|||  |+|.-|+-+|..|++.| +|.|+|..+..
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            345555  99999999999999999 99999998754

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.56  E-value=0.013  Score=42.84  Aligned_cols=30  Identities=27%  Similarity=0.282  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      .+.|||+|.-|.++|..|++++ +|.|..+-
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            5899999999999999999999 99997653

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.25  E-value=0.017  Score=42.03  Aligned_cols=30  Identities=20%  Similarity=0.337  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -+.|||+|.-|.-+|..++.+| +|.+++.-
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~   36 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDIN   36 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECC
Confidence            3789999999999999999999 99998864

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.07  E-value=0.027  Score=39.26  Aligned_cols=30  Identities=23%  Similarity=0.313  Sum_probs=26.3

Q ss_pred             EEEE-CCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIV-GAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVV-G~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +.|| |+|.-|..+|.+|++.| +|+|.-+-+
T Consensus         3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5678 77999999999999999 999987653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.05  E-value=0.02  Score=41.22  Aligned_cols=28  Identities=29%  Similarity=0.356  Sum_probs=25.6

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      +.|||+|.-|.++|..|++++ +|.|.-+
T Consensus         3 I~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           3 VSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            679999999999999999999 9998744

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.91  E-value=0.024  Score=41.49  Aligned_cols=29  Identities=31%  Similarity=0.395  Sum_probs=27.0

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +.|||.|.-|+++|..||+.| +|..+|.-
T Consensus         3 I~ViGlG~vGl~~a~~la~~g~~V~g~D~n   32 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence            689999999999999999999 99999864

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.84  E-value=0.031  Score=39.41  Aligned_cols=31  Identities=19%  Similarity=0.129  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      .+||||||-.|+-+|..|.+.|  +|.++++-.
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            6999999999999999999987  788887754

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.49  E-value=0.042  Score=36.37  Aligned_cols=30  Identities=20%  Similarity=0.001  Sum_probs=26.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      --++|||+|..|...|.+|.+.| +|.|+..
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~   43 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            36899999999999999999999 8888753

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.043  Score=38.05  Aligned_cols=30  Identities=13%  Similarity=0.004  Sum_probs=27.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +||+|.|.-|..+|.+|.+.+ +|++||.-+
T Consensus         6 iII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           6 FIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            899999999999999999999 999998754

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.40  E-value=0.04  Score=38.57  Aligned_cols=36  Identities=25%  Similarity=0.289  Sum_probs=31.3

Q ss_pred             CCCCccccEEEECCChHHHHHHHHHHhCC---cEEEEec
Q psy2463           1 MPTEYLSLENIVGAGTAGCVLANRLSLHH---TVLLIEA   36 (177)
Q Consensus         1 ~~~~~~~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEa   36 (177)
                      |+.+...-+.|||+|.-|..+|..|+..+   .++|++.
T Consensus         1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di   39 (148)
T d1ldna1           1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDA   39 (148)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEee
Confidence            66777778999999999999999999987   6888875

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.84  E-value=0.035  Score=38.57  Aligned_cols=28  Identities=18%  Similarity=0.254  Sum_probs=26.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEe
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIE   35 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLE   35 (177)
                      -++|||||..|.--|..|.+.| +|.|+-
T Consensus        15 rvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          15 RILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             EEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            5899999999999999999999 998883

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.26  E-value=0.072  Score=37.19  Aligned_cols=29  Identities=24%  Similarity=0.318  Sum_probs=26.3

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +-|||.|.-|..+|.+|.++| +|.+.++-
T Consensus         3 I~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            678999999999999999999 99988764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=91.62  E-value=0.067  Score=40.01  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      ..-|+|||.|.-|+.+|..|+..|  ++.|++...-
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            357999999999999999999999  8888886653

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=91.53  E-value=0.096  Score=36.03  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=27.4

Q ss_pred             cEEEEC-CChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVG-AGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG-~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -+.||| .|.-|..+|.+|.++| .|.+.++-.
T Consensus        11 kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          11 KIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             eEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            588999 7999999999999999 999987643

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=91.45  E-value=0.085  Score=36.80  Aligned_cols=31  Identities=16%  Similarity=0.297  Sum_probs=27.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC---cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG   37 (177)
                      --+.|||+|.-|..+|..|+..+   .|.|++.-
T Consensus         6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            46899999999999999999987   68888753

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.89  E-value=0.14  Score=34.64  Aligned_cols=35  Identities=23%  Similarity=0.192  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      -+++|||+|-+.+-.|..|++-. +|.||-+++...
T Consensus        31 k~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~   66 (126)
T d1fl2a2          31 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK   66 (126)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC
T ss_pred             ceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc
Confidence            37999999999999999999987 999999987643

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.71  E-value=0.086  Score=38.02  Aligned_cols=30  Identities=10%  Similarity=0.406  Sum_probs=24.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      -+|+|||+|..|.=+|..|++.+ ++.++=+
T Consensus        33 K~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~   63 (235)
T d1w4xa2          33 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQR   63 (235)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEES
T ss_pred             CEEEEECCCccHHHHHHHHHhhhcccccccc
Confidence            46999999999999999999988 5444433

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.21  E-value=0.18  Score=34.35  Aligned_cols=35  Identities=23%  Similarity=0.201  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFPS   41 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~~   41 (177)
                      =+++|||+|-+.+--|..|++-. +|.||-++....
T Consensus        35 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r   70 (130)
T d1vdca2          35 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR   70 (130)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc
Confidence            48999999999999999999987 999999887653

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.64  E-value=0.034  Score=38.67  Aligned_cols=28  Identities=32%  Similarity=0.211  Sum_probs=23.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEe
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIE   35 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLE   35 (177)
                      .+||||+|..|+-+|..|++.|  .+.+++
T Consensus        31 rVvVIGgG~~g~d~a~~~~r~G~~~~~~~~   60 (162)
T d1ps9a2          31 KVAIIGCGGIGFDTAMYLSQPGESTSQNIA   60 (162)
T ss_dssp             EEEEECCHHHHHHHHHHHTCCSSCGGGCHH
T ss_pred             ceEEEcCchhHHHHHHHHHHcCCccceeHh
Confidence            6899999999999999999988  445444

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.93  E-value=0.24  Score=33.24  Aligned_cols=34  Identities=26%  Similarity=0.143  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      =+++|||+|-+.+-.|.-|++-. +|.||-++...
T Consensus        28 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   62 (126)
T d1trba2          28 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF   62 (126)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc
Confidence            37999999999999999999988 99999988764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=88.91  E-value=0.22  Score=34.43  Aligned_cols=28  Identities=25%  Similarity=0.410  Sum_probs=24.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC---cEEEEec
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH---TVLLIEA   36 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEa   36 (177)
                      +.|||+|.-|..+|..|+..+   .++|++.
T Consensus         4 i~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~   34 (143)
T d1llda1           4 LAVIGAGAVGSTLAFAAAQRGIAREIVLEDI   34 (143)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             EEEECCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            789999999999999999988   6777774

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=88.73  E-value=0.21  Score=34.92  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=29.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           4 EYLSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         4 ~~~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      +.+.-+.|||+|.-|..+|..|+..+  .++|++.-.
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            34577899999999999999999988  788887543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=88.71  E-value=0.22  Score=34.97  Aligned_cols=31  Identities=19%  Similarity=0.075  Sum_probs=27.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -.++|+|+|-++-.++..|++.+ +|.|+-+=
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            46999999999999999999999 98887553

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=88.70  E-value=0.18  Score=35.00  Aligned_cols=29  Identities=28%  Similarity=0.484  Sum_probs=24.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC---cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH---TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG   37 (177)
                      +.|||+|.-|..+|..|+..+   .++|++.-
T Consensus         4 I~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           4 IGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            679999999999999999977   67777754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=88.55  E-value=0.25  Score=33.87  Aligned_cols=30  Identities=27%  Similarity=0.519  Sum_probs=25.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC---cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH---TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~   38 (177)
                      +.|||+|.-|..+|..|+..+   .+.|++.=.
T Consensus         3 I~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           3 ITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            679999999999999999987   788887544

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.34  E-value=0.24  Score=34.32  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=25.2

Q ss_pred             EEEECC-ChHHHHHHHHHHhCC---cEEEEecC
Q psy2463           9 ENIVGA-GTAGCVLANRLSLHH---TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~-G~aG~v~A~rLa~~g---~VLvLEaG   37 (177)
                      +.|||+ |.-|..+|..|+..+   .++|++.-
T Consensus         3 v~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           3 VAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             EEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            689995 999999999999988   67888753

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=88.31  E-value=0.2  Score=34.47  Aligned_cols=29  Identities=28%  Similarity=0.477  Sum_probs=25.5

Q ss_pred             EEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      +.|||+|.-|..+|..|+..+  .+++++.=
T Consensus         4 I~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~   34 (142)
T d1uxja1           4 ISIIGAGFVGSTTAHWLAAKELGDIVLLDIV   34 (142)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCSEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCcceEEEEeec
Confidence            679999999999999999988  88888753

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.88  E-value=0.25  Score=34.37  Aligned_cols=29  Identities=17%  Similarity=0.226  Sum_probs=26.3

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +-|||-|.-|..+|.+|+++| +|.+-++-
T Consensus         4 Ig~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           4 IAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            678999999999999999999 99987754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.75  E-value=0.23  Score=34.29  Aligned_cols=29  Identities=28%  Similarity=0.371  Sum_probs=25.2

Q ss_pred             EEEECCChHHHHHHHHHHhCC---cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH---TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG   37 (177)
                      +.|||+|.-|..+|..|+..+   .++|++.-
T Consensus         3 I~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           3 LGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             EEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            679999999999999999887   68888753

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=87.68  E-value=0.3  Score=33.76  Aligned_cols=28  Identities=29%  Similarity=0.597  Sum_probs=24.5

Q ss_pred             EEEEC-CChHHHHHHHHHHhCC---cEEEEec
Q psy2463           9 ENIVG-AGTAGCVLANRLSLHH---TVLLIEA   36 (177)
Q Consensus         9 ~IVVG-~G~aG~v~A~rLa~~g---~VLvLEa   36 (177)
                      +.||| +|.-|..+|..|...+   .++|++.
T Consensus         3 V~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           3 VSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             EEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            68999 6999999999999998   5777774

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=87.29  E-value=0.35  Score=34.58  Aligned_cols=32  Identities=19%  Similarity=0.142  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..++|||+|.+|.-++.-...-| .|.++|.-.
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            57999999999999999988889 999998753

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=87.28  E-value=0.33  Score=33.40  Aligned_cols=32  Identities=28%  Similarity=0.373  Sum_probs=26.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC---cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH---TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG~~   39 (177)
                      -+.|||+|.-|..+|..|...+   .+.|++.-..
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            3789999999999999999987   6899886554

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=86.95  E-value=0.34  Score=34.18  Aligned_cols=31  Identities=19%  Similarity=0.248  Sum_probs=27.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC---cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEaG   37 (177)
                      .-+.|||+|.-|..+|..|+..+   .++|++.-
T Consensus        21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          21 NKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            46899999999999999999998   68888764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=86.50  E-value=0.35  Score=33.89  Aligned_cols=31  Identities=6%  Similarity=0.029  Sum_probs=26.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEec
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEA   36 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEa   36 (177)
                      .-.++|+|+|-++-.++..|.+.+  +|.|+-+
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR   49 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR   49 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence            356999999999999999999998  7878754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.45  E-value=0.36  Score=33.99  Aligned_cols=30  Identities=27%  Similarity=0.401  Sum_probs=26.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC---cEEEEec
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH---TVLLIEA   36 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g---~VLvLEa   36 (177)
                      .-+.|||+|.-|..+|..|+..+   .++|++.
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~   52 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDA   52 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            45899999999999999999988   5888764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.35  E-value=0.4  Score=34.13  Aligned_cols=31  Identities=19%  Similarity=0.123  Sum_probs=26.3

Q ss_pred             cEEEEC-CChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVG-AGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG-~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -++|.| +|-.|..+|.+|++.| +|.++.+-.
T Consensus        25 ~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          25 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            467777 6999999999999999 999976653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.27  E-value=0.39  Score=32.84  Aligned_cols=30  Identities=27%  Similarity=0.335  Sum_probs=26.0

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +-|||.|..|..+|.+|.++| .|.+.....
T Consensus         3 IgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            578999999999999999999 888765544

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.25  E-value=0.18  Score=34.03  Aligned_cols=32  Identities=22%  Similarity=0.132  Sum_probs=23.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-C--cEEEEec
Q psy2463           5 YLSLENIVGAGTAGCVLANRLSLH-H--TVLLIEA   36 (177)
Q Consensus         5 ~~~D~IVVG~G~aG~v~A~rLa~~-g--~VLvLEa   36 (177)
                      .++-++|+|+|.+|..++..|..+ +  =|.+++-
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDd   36 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDV   36 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEES
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeC
Confidence            357899999999999999877644 3  3455553

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=85.97  E-value=0.4  Score=34.69  Aligned_cols=33  Identities=15%  Similarity=0.113  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ..++|||+|.+|.-+|.-...-| .|.++|.-..
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            47999999999999888877788 9999987654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.97  E-value=0.42  Score=33.22  Aligned_cols=30  Identities=27%  Similarity=0.383  Sum_probs=26.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAG   37 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG   37 (177)
                      -+.|||+|.-|..+|..|...+  .++|++.=
T Consensus         5 KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~   36 (150)
T d1t2da1           5 KIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   36 (150)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            4789999999999999999988  88888863

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.89  E-value=0.34  Score=33.19  Aligned_cols=28  Identities=32%  Similarity=0.455  Sum_probs=24.4

Q ss_pred             EEEECCChHHHHHHHHHHhCC---cEEEEec
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH---TVLLIEA   36 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEa   36 (177)
                      +.|||+|.-|..+|..|+..+   .++|++.
T Consensus         3 I~IIGaG~VG~~~a~~l~~~~l~~el~L~Di   33 (140)
T d1a5za1           3 IGIVGLGRVGSSTAFALLMKGFAREMVLIDV   33 (140)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             EEEECcCHHHHHHHHHHHhCCCCCEEEEEec
Confidence            679999999999999999987   6788764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.87  E-value=0.33  Score=34.55  Aligned_cols=29  Identities=24%  Similarity=0.313  Sum_probs=24.8

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +.|||.|.-|+++|.-|| .| +|+.+|--.
T Consensus         3 I~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           3 IAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            689999999999999887 48 999988553

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.84  E-value=0.31  Score=33.76  Aligned_cols=30  Identities=13%  Similarity=0.277  Sum_probs=26.4

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      +=|||-|.-|..+|.+|+++| +|.+-++-+
T Consensus         3 IgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            568999999999999999999 999876543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=85.74  E-value=0.48  Score=33.24  Aligned_cols=32  Identities=16%  Similarity=0.106  Sum_probs=27.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      ..+=|||-|.-|..+|.+|.++| +|.+-.+-+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            46789999999999999999999 999876543

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.71  E-value=0.45  Score=32.82  Aligned_cols=29  Identities=31%  Similarity=0.410  Sum_probs=24.9

Q ss_pred             EEEECC-ChHHHHHHHHHHhCC---cEEEEecC
Q psy2463           9 ENIVGA-GTAGCVLANRLSLHH---TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~-G~aG~v~A~rLa~~g---~VLvLEaG   37 (177)
                      +.|||+ |.-|..+|..|+..+   .++|++.-
T Consensus         3 V~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           3 VTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             EEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             EEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            789995 999999999999988   67777653

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=85.65  E-value=0.36  Score=33.78  Aligned_cols=28  Identities=25%  Similarity=0.366  Sum_probs=25.1

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      +=|||-|.-|..+|.+|.++| +|.+-++
T Consensus         4 IGvIGlG~MG~~ma~~L~~~G~~V~~~dr   32 (178)
T d1pgja2           4 VGVVGLGVMGANLALNIAEKGFKVAVFNR   32 (178)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             EEEEeehHHHHHHHHHHHHCCCeEEEEEC
Confidence            558999999999999999999 9988654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.44  E-value=0.33  Score=39.56  Aligned_cols=33  Identities=27%  Similarity=0.509  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecCCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGDF   39 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~~   39 (177)
                      .-++|||+|.-|+.+|..|+..|  ++.|++...-
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~V   72 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   72 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            46999999999999999999999  8999988753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=84.99  E-value=0.47  Score=34.63  Aligned_cols=34  Identities=21%  Similarity=0.126  Sum_probs=29.5

Q ss_pred             ccEEEECC-ChHHHHHHHHHHhCC-cEEEEecCCCC
Q psy2463           7 SLENIVGA-GTAGCVLANRLSLHH-TVLLIEAGDFP   40 (177)
Q Consensus         7 ~D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~~~   40 (177)
                      --++|+|| |.-|..++.+|.+.| +|.+|.+....
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            34899996 999999999999999 99999887643

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=84.73  E-value=0.41  Score=33.46  Aligned_cols=30  Identities=30%  Similarity=0.349  Sum_probs=25.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEec
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEA   36 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEa   36 (177)
                      --++|||+|..|..+|..|...+  +|.|.=+
T Consensus        25 ~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nR   56 (159)
T d1gpja2          25 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR   56 (159)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcEEEEEcC
Confidence            45899999999999999999988  5766543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=84.67  E-value=0.57  Score=32.29  Aligned_cols=32  Identities=19%  Similarity=0.093  Sum_probs=25.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      .++|+|+|+-|..++.-+...| +|+++|....
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            5788999999998876666678 9999987643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.40  E-value=0.59  Score=32.38  Aligned_cols=31  Identities=19%  Similarity=0.170  Sum_probs=25.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      .++|+|+|+-|..++.-+...|  +|.++|.-+
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            5899999999998887766667  799988654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.36  E-value=0.53  Score=32.41  Aligned_cols=28  Identities=25%  Similarity=0.258  Sum_probs=24.0

Q ss_pred             EEEECCChHHHHHHHHHHhCC---cEEEEec
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH---TVLLIEA   36 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g---~VLvLEa   36 (177)
                      +.|||.|.-|..+|.+|.+.+   +|...+.
T Consensus         4 I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~   34 (171)
T d2g5ca2           4 VLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI   34 (171)
T ss_dssp             EEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             EEEEccCHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            789999999999999999987   5666554

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.37  E-value=0.76  Score=32.55  Aligned_cols=31  Identities=16%  Similarity=0.165  Sum_probs=27.2

Q ss_pred             EEEEC-CChHHHHHHHHHHhCC-cEEEEecCCC
Q psy2463           9 ENIVG-AGTAGCVLANRLSLHH-TVLLIEAGDF   39 (177)
Q Consensus         9 ~IVVG-~G~aG~v~A~rLa~~g-~VLvLEaG~~   39 (177)
                      ++|+| +|.-|..++.+|.++| +|.++-+-+.
T Consensus         6 IlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             EEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            88999 5999999999999999 9998876543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=83.00  E-value=0.71  Score=32.53  Aligned_cols=32  Identities=19%  Similarity=0.304  Sum_probs=27.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      -.++|+|+|-++..++..|.+.+  ++.|.-+-.
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            47999999999999999999988  677776543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=82.71  E-value=0.49  Score=33.29  Aligned_cols=31  Identities=23%  Similarity=0.154  Sum_probs=27.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      -.++|+|+|-++-.++..|.+.+ +|.|+-+=
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            46899999999999999999877 88888664

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=82.33  E-value=0.6  Score=34.42  Aligned_cols=28  Identities=11%  Similarity=0.019  Sum_probs=23.0

Q ss_pred             EEEECC-Ch--HHHHHHHHHHhCC-cEEEEec
Q psy2463           9 ENIVGA-GT--AGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         9 ~IVVG~-G~--aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      +||.|+ |.  -|..+|.+|++.| +|++..+
T Consensus         9 ~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~   40 (268)
T d2h7ma1           9 ILVSGIITDSSIAFHIARVAQEQGAQLVLTGF   40 (268)
T ss_dssp             EEECCCSSTTCHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            778884 54  6899999999999 9988754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=82.10  E-value=0.84  Score=33.55  Aligned_cols=32  Identities=22%  Similarity=0.142  Sum_probs=27.5

Q ss_pred             ccEEEECC-ChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           7 SLENIVGA-GTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         7 ~D~IVVG~-G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      .-++|+|| |.-|..++.+|.+.| +|.++-+..
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            34899996 999999999999999 998886654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=81.76  E-value=0.75  Score=33.48  Aligned_cols=30  Identities=20%  Similarity=0.221  Sum_probs=27.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-cEEEEec
Q psy2463           7 SLENIVGAGTAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         7 ~D~IVVG~G~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      --++|.|.|.-|.-+|..|++.| +|++.+.
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~   58 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADT   58 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecc
Confidence            34899999999999999999999 9988765

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.57  E-value=0.81  Score=32.34  Aligned_cols=31  Identities=23%  Similarity=0.257  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-cEEEEecCC
Q psy2463           8 LENIVGAGTAGCVLANRLSLHH-TVLLIEAGD   38 (177)
Q Consensus         8 D~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG~   38 (177)
                      -++|||-|--|-.+|.+|..-| +|++.|.-+
T Consensus        26 ~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          26 VAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            4899999999999999999999 999999855

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=81.50  E-value=0.93  Score=33.82  Aligned_cols=36  Identities=19%  Similarity=0.233  Sum_probs=27.2

Q ss_pred             CCCCcc-ccEEEECCC---hHHHHHHHHHHhCC-cEEEEec
Q psy2463           1 MPTEYL-SLENIVGAG---TAGCVLANRLSLHH-TVLLIEA   36 (177)
Q Consensus         1 ~~~~~~-~D~IVVG~G---~aG~v~A~rLa~~g-~VLvLEa   36 (177)
                      ||.+++ -=+||.|++   --|..+|.+|++.| +|++..+
T Consensus         2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~   42 (297)
T d1d7oa_           2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            555443 237788865   37999999999999 9988754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=81.31  E-value=0.81  Score=33.96  Aligned_cols=33  Identities=18%  Similarity=0.143  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--cEEEEecCC
Q psy2463           6 LSLENIVGAGTAGCVLANRLSLHH--TVLLIEAGD   38 (177)
Q Consensus         6 ~~D~IVVG~G~aG~v~A~rLa~~g--~VLvLEaG~   38 (177)
                      +.-+|+.|+|.||+-+|..|.+.+  ++.++++-+
T Consensus        26 d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          26 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            467999999999999999998877  888888864

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.99  E-value=0.78  Score=31.40  Aligned_cols=29  Identities=14%  Similarity=0.315  Sum_probs=25.8

Q ss_pred             EEEECCChHHHHHHHHHHhCC-cEEEEecC
Q psy2463           9 ENIVGAGTAGCVLANRLSLHH-TVLLIEAG   37 (177)
Q Consensus         9 ~IVVG~G~aG~v~A~rLa~~g-~VLvLEaG   37 (177)
                      +-+||+|.-|..+|.+|.+++ +|.+-++-
T Consensus         3 Ig~IG~G~mG~al~~~l~~~~~~i~v~~r~   32 (152)
T d2ahra2           3 IGIIGVGKMASAIIKGLKQTPHELIISGSS   32 (152)
T ss_dssp             EEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             EEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence            578999999999999999999 89887654