Psyllid ID: psy2472

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-

MVTEGNIAENEDNAVKVQPKETPAAKPKVVYTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQGDKRHFKKREVTEQHLKDEKFIYIPLMLAERAWGYAMQLRQEANTEPRKKFHLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQTHGDLLHSLDSLMIQSKEHSAEVLSEVSWRGRSVAVRSERVRVFLLAERSLDASLGQAGADKIELLESHLMDCKDAIQVIKEEVKQDPNSKNRTQGSGLSSLQYLHSYLMYIRLERTIQRNLLLAQQAKDNLKTAGNGQQPSEGKKTRPQDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGELATLKPELATLEAAIDSNKYSALAYSVLGTEGTPDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLASKSPNVIKLPPDMQPIPAKPLFFDLAQNQLEF

cccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHccccccc

cccccccccccccccccccccccccccccEEcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHEHEHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccEEEEcccEEEcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccccccccccccccEEHHHHHHHccc

mvtegniaenednavkvqpketpaakpkvVYTIEILKIIKDAQqqhglrhgdyqryrGYCTRRIRRLRktlhlpqgdkrhfkkrEVTEQHLKDEKFIYIPLMLAERAWGYAMQLRQeanteprkkfHLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQTHGDLLHSLDSLMIQSKEHSAEVLSEVSWRGRSVAVRSERVRVFLLAERSLDASLGQAGADKIELLESHLMDCKDAIQVIKEEvkqdpnsknrtqgsglssLQYLHSYLMYIRLERTIQRNLLLAQQAKDNlktagngqqpsegkktrpqdLVRLYEIILQNLGElqqlsgmeddaqyQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYAsdaasslpssgelatlkpELATLEAAIDSNKYSALAYSVlgtegtpdtepgtvakpgaklkkvplaerlgeyyedpslaskspnviklppdmqpipakplfFDLAQNQLEF

mvtegniaenednavkvqpketpaakpKVVYTIEILKIIKdaqqqhglrhgdyqryrgYCTRRIRRlrktlhlpqgdkrhfkkrevteqhlkdekfiyIPLMLAERAWGYAMQLRQEANTEPRKKFHLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQTHGDLLHSLDSLMIQSKEHSAEVlsevswrgrsvavrsERVRVFLLAersldaslgqAGADKIELLESHLMDCKDAIQVIKeevkqdpnsknrtqgsglssLQYLHSYLMYIRLERTIQRNLLLAQQAKDNLktagngqqpsegkktrpqdLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYAsdaasslpssgELATLKPELATLEAAIDSNKYSALAYSVLGTegtpdtepgtvakpgaklkKVPLAERLGEYYEDPSLASKSPNVIKLPPDMQPIPAKPLFFDLAQNQLEF

MVTEGNIAENEDNAVKVQPKETPAAKPKVVYTIEILKIIKDAQQQHGLRHGDYQryrgyctrrirrlrKTLHLPQGDKRHFKKREVTEQHLKDEKFIYIPLMLAERAWGYAMQLRQEANTEPRKKFHLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQTHGDLLHSLDSLMIQSKEHSAEVLSEVSWrgrsvavrservrvFLLAERSLDASLGQAGADKIELLESHLMDCKDAIQVIKEEVKQDPNSKNRTQGSGLSSLQYLHSYLMYIRLERTIQRNLLLAQQAKDNLKTAGNGQQPSEGKKTRPQDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGELATLKPELATLEAAIDSNKYSALAYSVLgtegtpdtepgtVAKPGAKLKKVPLAERLGEYYEDPSLASKSPNVIKLPPDMQPIPAKPLFFDLAQNQLEF

***************************KVVYTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQ**********VTEQHLKDEKFIYIPLMLAERAWGYAMQLRQEA****RKKFHLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQTHGDLLHSLDSLMI********VLSEVSWRGRSVAVRSERVRVFLL***********************LMDCKDAIQVI********************SLQYLHSYLMYIRLERTIQRNLLLA**************************LVRLYEIILQNLGELQQLS******QYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYA********************ATLEAAIDSNKYSALAYSVL***********************************************************************

********************************IEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLR***************REVTEQHLKDEKFIYIPLMLAERAWGYA******************SRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNI******************************************SWRGRSVAVRSERVRVFLLAERSLD**********IELLESHLMDCKDAIQVI*********************LQYLHSYLMYIRLERTIQRNLLLAQQA***********************LVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAY********************LATLEAAIDSNKYSALAYSVL*************************AERLGEYYEDPSLASKSPNVIKLPPDMQPIPAKPLFFDLAQNQLEF

********ENEDNAVKVQPKETPAAKPKVVYTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQGDKRHFKKREVTEQHLKDEKFIYIPLMLAERAWGYAMQLRQEANTEPRKKFHLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQTHGDLLHSLDSLMIQSK**********SWRGRSVAVRSERVRVFLLAERSLDASLGQAGADKIELLESHLMDCKDAIQVIKEEVK************GLSSLQYLHSYLMYIRLERTIQRNLLLAQQAKDN*****************PQDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAY************ELATLKPELATLEAAIDSNKYSALAYSVLGTEGTPDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLASKSPNVIKLPPDMQPIPAKPLFFDLAQNQLEF

***************************KVVYTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQGDKRHFKKREVTEQHLKDEKFIYIPLMLAERAWGYAMQLRQEANTEPRKKFHLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQTHGDLLHSLDSLMIQSKEHSAEVLSEVSWRGRSVAVRSERVRVFLLAERSLDASLGQAGADKIELLESHLMDCKDAIQVIKEEVKQDPNSKNRTQGSGLSSLQYLHSYLMYIRLERTIQRNLLLAQQAKDNLKTAGNG******KKTRPQDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGELATLKPELATLEAAIDSNKYSALAYSVLGTEGTPDT*************KVPLAERLGEYYEDPSLASKSPNVIKLPPDMQPIPAKPLFFDLAQNQLEF

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MVTEGNIAENEDNAVKVQPKETPAAKPKVVYTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQGDKRHFKKREVTEQHLKDEKFIYIPLMLAERAWGYAMQLRQEANTEPRKKFHLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAxxxxxxxxxxxxxxxxxxxxxDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQTHGDLLHSLDSLMIQSKEHSAEVLSEVSWRGRSVAVRSERVRVFLLAERSLDASLGQAGADKIELLESHLMDCKDAIQVIKEEVKQDPNSKNRTQGSGLSSLQYLHSYLMYIRLERTIQRNLLLAQQAKDNLKTAGNGQQPSEGKKTRPQDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGELATLKPELATLEAAIDSNKYSALAYSVLGTEGTPDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLASKSPNVIKLPPDMQPIPAKPLFFDLAQNQLEF

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		571	2.2.26 [Sep-21-2011]
Q9VSS2		604	Signal recognition partic	yes	N/A	0.973	0.920	0.551	1e-171
Q8BMA6		625	Signal recognition partic	yes	N/A	0.926	0.846	0.467	1e-142
Q9UHB9		627	Signal recognition partic	yes	N/A	0.931	0.848	0.467	1e-142
Q00004		622	Signal recognition partic	yes	N/A	0.922	0.847	0.468	1e-141
Q20822		622	Probable signal recogniti	yes	N/A	0.901	0.827	0.320	2e-69
Q1ZXE8		614	Signal recognition partic	yes	N/A	0.936	0.871	0.249	1e-40
O74436		597	Signal recognition partic	yes	N/A	0.831	0.795	0.243	2e-16
Q6BMV4		587	Signal recognition partic	yes	N/A	0.665	0.647	0.218	0.0007

>sp\|Q9VSS2\|SRP68_DROME Signal recognition particle 68 kDa protein OS=Drosophila melanogaster GN=Srp68 PE=2 SV=1	Back alignment and function desciption

 Score =  602 bits (1553), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 319/578 (55%), Positives = 411/578 (71%), Gaps = 22/578 (3%)

Query: 7   IAENEDNAVKVQPK-ET-PAAKPKVVYTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRI 64
           + E+  N   VQ K ET P A+P  ++T+EIL +IKDAQQQHGLRHGD+QRYRGYC+RRI
Sbjct: 3   VQEDNPNTGDVQEKTETAPVAEPSKIFTVEILHMIKDAQQQHGLRHGDFQRYRGYCSRRI 62

Query: 65  RRLRKTLHLPQGDKRHFKKREVTEQHLK----DEKFIYIPLMLAERAWGYAMQLRQEANT 120
           RRLRK L  PQGDKRHFK+R+VT   L     DE+FI+IPL+ AERAW YAMQL+QE+NT
Sbjct: 63  RRLRKALKYPQGDKRHFKRRDVTIGQLTGKKADERFIHIPLICAERAWAYAMQLKQESNT 122

Query: 121 EPRKKFHLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSA 180
           EPRK+FHLV++LR+A  YA+QLQ LC  E  DARTKLE +AYV+W+ G LHFEL+LWK+A
Sbjct: 123 EPRKRFHLVNKLRRACFYALQLQELCNTEAFDARTKLECEAYVAWMHGTLHFELQLWKTA 182

Query: 181 MKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNI-GDQAG--IEDLMQLR 237
            ++LK AQVVYE L  AL E++  LY+ KV E TP+LRYCAYNI G  +G  I+++++LR
Sbjct: 183 GEHLKRAQVVYENLGKALPEDEQELYRAKVNEFTPNLRYCAYNISGGASGGKIDEILELR 242

Query: 238 SQTHGDLLHSLDSLMIQSKEHSAEVLSEVSWRGRSVAVRSERVRVFLLAERSLDASLGQA 297
           +Q    +L +LD L+ Q+K  S+E L  + WRGR V VR E+VR+FLL+ + LD SL + 
Sbjct: 243 AQ---GVLENLDVLVSQTKTESSEGLQTIDWRGRKVTVRPEKVRLFLLSAQELDKSLAKT 299

Query: 298 GAD--KIELLESHLMDCKDAIQVIKEEVKQDPNSKNRTQGSGLSSLQYLHSYLMYIRLER 355
                KIEL+E  LMDCKDAIQ +++E+KQDP  ++ T G  +S +QYL +YL YIR  R
Sbjct: 300 TKQDAKIELIERILMDCKDAIQAVRDEIKQDPKLRSLTTGQTVSGVQYLLAYLSYIRHSR 359

Query: 356 TIQRNLLLAQQAKDNLKTAG--NGQQPSEGKKTRPQDLVRLYEIILQNLGELQQLSGMED 413
           T+QRNL L +QAK N       + Q   +GK+ RPQDL RLYEIILQN+ E+QQ++G+ED
Sbjct: 360 TLQRNLCLVEQAKLNFYDPNLQSQQNVGDGKRVRPQDLARLYEIILQNVTEMQQINGLED 419

Query: 414 DAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGEL 473
           DA YQ  VE    T+KAFRC+YIA +L  +++W++ VALY RA+ YA++A     SS E 
Sbjct: 420 DATYQSEVENLAITFKAFRCYYIALTLIDIKKWKEAVALYERASNYATEALKG-KSSPEF 478

Query: 474 ATLKPELATLEAAIDSNKYSALAYSVLGTEGTPDTEPGTVAKPGAKLKKVPLAERLGEYY 533
             L+ EL  + +AID  K+SA AYSVL  E     E GT  K  ++    PL ERL  Y 
Sbjct: 479 -QLQEELKKVVSAIDGCKFSAHAYSVL--EDDNSEESGTTTK--SQKTTKPLYERLSLYK 533

Query: 534 EDPSLASKSPNVIKLPPDMQPIPAKPLFFDLAQNQLEF 571
           ED SL +K+PNV KL PDM+PIP KP+FFDLA   +E 
Sbjct: 534 EDQSLHTKAPNVFKLTPDMEPIPCKPIFFDLAMTYVEL 571

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Srp68 binds the 7S RNA, Srp72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.
Drosophila melanogaster (taxid: 7227)

>sp\|Q8BMA6\|SRP68_MOUSE Signal recognition particle 68 kDa protein OS=Mus musculus GN=Srp68 PE=2 SV=2	Back alignment and function description

>sp\|Q9UHB9\|SRP68_HUMAN Signal recognition particle 68 kDa protein OS=Homo sapiens GN=SRP68 PE=1 SV=2	Back alignment and function description

>sp\|Q00004\|SRP68_CANFA Signal recognition particle 68 kDa protein OS=Canis familiaris GN=SRP68 PE=1 SV=1	Back alignment and function description

>sp\|Q20822\|SRP68_CAEEL Probable signal recognition particle 68 kDa protein OS=Caenorhabditis elegans GN=F55C5.8 PE=3 SV=2	Back alignment and function description

>sp\|Q1ZXE8\|SRP68_DICDI Signal recognition particle subunit SRP68 OS=Dictyostelium discoideum GN=srp68 PE=3 SV=1	Back alignment and function description

>sp\|O74436\|SRP68_SCHPO Signal recognition particle subunit srp68 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp68 PE=3 SV=1	Back alignment and function description

>sp\|Q6BMV4\|SRP68_DEBHA Signal recognition particle subunit SRP68 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SRP68 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		571
242017789		596	conserved hypothetical protein [Pediculu	0.964	0.924	0.576	0.0
157125066		609	signal recognition particle 68 kda prote	0.940	0.881	0.565	1e-175
195129173		606	GI13825 [Drosophila mojavensis] gi\|19392	0.970	0.914	0.560	1e-175
328722672		580	PREDICTED: signal recognition particle 6	0.931	0.917	0.562	1e-174
195378198		606	GJ11691 [Drosophila virilis] gi\|19415502	0.970	0.914	0.558	1e-174
195017218		607	GH16536 [Drosophila grimshawi] gi\|193898	0.985	0.927	0.546	1e-173
312379330		625	hypothetical protein AND_08864 [Anophele	0.938	0.857	0.556	1e-172
170044520		613	signal recognition particle 68 kDa prote	0.940	0.876	0.565	1e-172
195326181		604	GM25108 [Drosophila sechellia] gi\|194118	0.973	0.920	0.550	1e-170
195442591		603	GK12346 [Drosophila willistoni] gi\|19416	0.975	0.923	0.542	1e-169

>gi\|242017789\|ref\|XP_002429369.1\| conserved hypothetical protein [Pediculus humanus corporis] gi\|212514278\|gb\|EEB16631.1\| conserved hypothetical protein [Pediculus humanus corporis]	Back alignment and taxonomy information

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/571 (57%), Positives = 427/571 (74%), Gaps = 20/571 (3%)

Query: 10  NEDNAVKVQPKETPAAKPK----VVYTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIR 65
           NE+NA +V+ K+   +  K    +V ++EILK+IK+AQQQHGLRHGDYQRYR YC+RRIR
Sbjct: 4   NEENANEVKEKKVEVSNVKKSKNIVLSVEILKVIKEAQQQHGLRHGDYQRYRCYCSRRIR 63

Query: 66  RLRKTLHLPQGDKRHFKKREVTEQHLKDEKFIYIPLMLAERAWGYAMQLRQEANTEPRKK 125
           RLRK L + QGD++H+KKR VTE  LKDE+++YIPLM+AERAW YAMQLRQEANTEPRKK
Sbjct: 64  RLRKVLKVTQGDRKHYKKRPVTESMLKDERYLYIPLMMAERAWSYAMQLRQEANTEPRKK 123

Query: 126 FHLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLK 185
           FHL+ RLRKAA+YA+QLQ LCE+ VCDA TKLEAQAYV+WI G L FEL+LWK AM+NLK
Sbjct: 124 FHLIQRLRKAATYALQLQALCESSVCDAVTKLEAQAYVAWIHGSLQFELQLWKPAMENLK 183

Query: 186 EAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQTHGDLL 245
           +AQVVY+KL+  +NE+D  +YK +++ELTPSLRYC+YNIG+++ +EDL+ +R Q H DLL
Sbjct: 184 KAQVVYQKLVEVVNEDDQPIYKSRIDELTPSLRYCSYNIGEESDVEDLLAMRMQGH-DLL 242

Query: 246 HSLDSLMIQSKEHSAEVLSEVSWRGRSVAVRSERVRVFLLAERSLDASLGQA--GADKIE 303
            + DSLM +SK+  A VL EV WRGR V VR ERVR+FLLA++ LD ++ +A     KIE
Sbjct: 243 ANFDSLMEKSKQKRAGVLEEVEWRGRKVQVRPERVRLFLLADKQLDGAVSKALNITSKIE 302

Query: 304 LLESHLMDCKDAIQVIKEEVKQDPNSK-NRTQGSGLSSLQYLHSYLMYIRLERTIQRNLL 362
           LLE++LMDCKDAI  +++E+K D +SK  R +   +SSLQYL SYL +IRL RTI RNLL
Sbjct: 303 LLENNLMDCKDAIASLRDEMKGDASSKVVREKNQPVSSLQYLLSYLTFIRLSRTIDRNLL 362

Query: 363 LAQQ--AKDNLKTAGNGQQPSEGKKTRPQDLVRLYEIILQNLGELQQLSGMEDDAQYQES 420
           + +Q  AK+    A    +    KK RP+D +RLYE+ILQN+ E+QQL G+EDDA+YQ+ 
Sbjct: 363 MIEQMKAKETEPKAKETNENIREKKIRPEDFIRLYEMILQNVTEMQQLPGLEDDAKYQKE 422

Query: 421 VEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGELATLKPEL 480
           ++V+ K YKA+RC++IAE L  L+RW + +ALY R+  Y S+  S   +  +      E 
Sbjct: 423 LDVKVKIYKAYRCYHIAEYLVTLKRWSEAIALYQRSQQYISEVKSMGSAYNK------EA 476

Query: 481 ATLEAAIDSNKYSALAYSVLGTEGTPDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLAS 540
             LEAA++ +K+SALA+ VL  E   + EP  V +   K +K PL ERL EY EDP+L S
Sbjct: 477 KELEAAVEGSKFSALAHHVLEGE-VQEEEPSGVKQ--YKTRK-PLVERLDEYKEDPALLS 532

Query: 541 KSPNVIKLPPDMQPIPAKPLFFDLAQNQLEF 571
           K PNV K+PPDM+P+P KPLFFDLA N  EF
Sbjct: 533 KYPNVFKIPPDMRPVPCKPLFFDLAFNFAEF 563

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|157125066\|ref\|XP_001660604.1\| signal recognition particle 68 kda protein [Aedes aegypti] gi\|108873787\|gb\|EAT38012.1\| AAEL010060-PA [Aedes aegypti]	Back alignment and taxonomy information

>gi\|195129173\|ref\|XP_002009033.1\| GI13825 [Drosophila mojavensis] gi\|193920642\|gb\|EDW19509.1\| GI13825 [Drosophila mojavensis]	Back alignment and taxonomy information

>gi\|328722672\|ref\|XP_001943603.2\| PREDICTED: signal recognition particle 68 kDa protein-like isoform 1 [Acyrthosiphon pisum] gi\|328722674\|ref\|XP_003247634.1\| PREDICTED: signal recognition particle 68 kDa protein-like isoform 2 [Acyrthosiphon pisum] gi\|328722676\|ref\|XP_003247635.1\| PREDICTED: signal recognition particle 68 kDa protein-like isoform 3 [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|195378198\|ref\|XP_002047871.1\| GJ11691 [Drosophila virilis] gi\|194155029\|gb\|EDW70213.1\| GJ11691 [Drosophila virilis]	Back alignment and taxonomy information

>gi\|195017218\|ref\|XP_001984559.1\| GH16536 [Drosophila grimshawi] gi\|193898041\|gb\|EDV96907.1\| GH16536 [Drosophila grimshawi]	Back alignment and taxonomy information

>gi\|312379330\|gb\|EFR25641.1\| hypothetical protein AND_08864 [Anopheles darlingi]	Back alignment and taxonomy information

>gi\|170044520\|ref\|XP_001849893.1\| signal recognition particle 68 kDa protein [Culex quinquefasciatus] gi\|167867633\|gb\|EDS31016.1\| signal recognition particle 68 kDa protein [Culex quinquefasciatus]	Back alignment and taxonomy information

>gi\|195326181\|ref\|XP_002029808.1\| GM25108 [Drosophila sechellia] gi\|194118751\|gb\|EDW40794.1\| GM25108 [Drosophila sechellia]	Back alignment and taxonomy information

>gi\|195442591\|ref\|XP_002069036.1\| GK12346 [Drosophila willistoni] gi\|194165121\|gb\|EDW80022.1\| GK12346 [Drosophila willistoni]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		571
FB\|FBgn0035947		604	Srp68 "Signal recognition part	0.971	0.918	0.507	1.9e-140
ZFIN\|ZDB-GENE-040831-3		617	srp68 "signal recognition part	0.959	0.888	0.430	2.1e-116
UNIPROTKB\|F1P0P4		602	SRP68 "Uncharacterized protein	0.970	0.920	0.426	2.7e-116
MGI\|MGI:1917447		625	Srp68 "signal recognition part	0.975	0.891	0.424	5e-115
UNIPROTKB\|A6QQW3		623	SRP68 "Uncharacterized protein	0.975	0.894	0.424	6.4e-115
UNIPROTKB\|F1PI42		618	SRP68 "Signal recognition part	0.973	0.899	0.425	1e-114
UNIPROTKB\|Q00004		622	SRP68 "Signal recognition part	0.973	0.893	0.425	1e-114
UNIPROTKB\|Q9UHB9		627	SRP68 "Signal recognition part	0.977	0.889	0.425	2.8e-114
UNIPROTKB\|F1RW08		624	SRP68 "Uncharacterized protein	0.975	0.892	0.422	3.2e-113
UNIPROTKB\|G3V1U4		589	SRP68 "Signal recognition part	0.819	0.794	0.438	2.4e-108

FB\|FBgn0035947 Srp68 "Signal recognition particle protein 68" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1374 (488.7 bits), Expect = 1.9e-140, P = 1.9e-140
 Identities = 293/577 (50%), Positives = 382/577 (66%)

Query:     7 IAENEDNAVKVQPK-ET-PAAKPKVVYTIEILKIIKDAQQQHGLRHGDYQXXXXXXXXXX 64
             + E+  N   VQ K ET P A+P  ++T+EIL +IKDAQQQHGLRHGD+Q          
Sbjct:     3 VQEDNPNTGDVQEKTETAPVAEPSKIFTVEILHMIKDAQQQHGLRHGDFQRYRGYCSRRI 62

Query:    65 XXXXKTLHLPQGDKRHFKKREVTEQHLK----DEKFIYIPLMLAERAWGYAMQLRQEANT 120
                 K L  PQGDKRHFK+R+VT   L     DE+FI+IPL+ AERAW YAMQL+QE+NT
Sbjct:    63 RRLRKALKYPQGDKRHFKRRDVTIGQLTGKKADERFIHIPLICAERAWAYAMQLKQESNT 122

Query:   121 EPRKKFHLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSA 180
             EPRK+FHLV++LR+A  YA+QLQ LC  E  DARTKLE +AYV+W+ G LHFEL+LWK+A
Sbjct:   123 EPRKRFHLVNKLRRACFYALQLQELCNTEAFDARTKLECEAYVAWMHGTLHFELQLWKTA 182

Query:   181 MKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNI-GDQAG--IEDLMQLR 237
              ++LK AQVVYE L  AL E++  LY+ KV E TP+LRYCAYNI G  +G  I+++++LR
Sbjct:   183 GEHLKRAQVVYENLGKALPEDEQELYRAKVNEFTPNLRYCAYNISGGASGGKIDEILELR 242

Query:   238 SQTHGDLLHSLDSLMIQSKEHSAEVLSEVSWXXXXXXXXXXXXXXFLLAERSLDASLGQA 297
             +Q    +L +LD L+ Q+K  S+E L  + W              FLL+ + LD SL + 
Sbjct:   243 AQ---GVLENLDVLVSQTKTESSEGLQTIDWRGRKVTVRPEKVRLFLLSAQELDKSLAKT 299

Query:   298 GAD--KIELLESHLMDCKDAIQVIKEEVKQDPNSKNRTQGSGLSSLQYLHSYLMYIRLER 355
                  KIEL+E  LMDCKDAIQ +++E+KQDP  ++ T G  +S +QYL +YL YIR  R
Sbjct:   300 TKQDAKIELIERILMDCKDAIQAVRDEIKQDPKLRSLTTGQTVSGVQYLLAYLSYIRHSR 359

Query:   356 TIQRNLLLAQQAKDNLKTAG--NGQQPSEGKKTRPQDLVRLYEIILQNLGELQQLSGMED 413
             T+QRNL L +QAK N       + Q   +GK+ RPQDL RLYEIILQN+ E+QQ++G+ED
Sbjct:   360 TLQRNLCLVEQAKLNFYDPNLQSQQNVGDGKRVRPQDLARLYEIILQNVTEMQQINGLED 419

Query:   414 DAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGEL 473
             DA YQ  VE    T+KAFRC+YIA +L  +++W++ VALY RA+ YA++A     SS E 
Sbjct:   420 DATYQSEVENLAITFKAFRCYYIALTLIDIKKWKEAVALYERASNYATEALKG-KSSPEF 478

Query:   474 ATLKPELATLEAAIDSNKYSALAYSVLXXXXXXXXXXXXVAKPGAKLKKVPLAERLGEYY 533
               L+ EL  + +AID  K+SA AYSVL             ++   K    PL ERL  Y 
Sbjct:   479 Q-LQEELKKVVSAIDGCKFSAHAYSVLEDDNSEESGTTTKSQKTTK----PLYERLSLYK 533

Query:   534 EDPSLASKSPNVIKLPPDMQPIPAKPLFFDLAQNQLE 570
             ED SL +K+PNV KL PDM+PIP KP+FFDLA   +E
Sbjct:   534 EDQSLHTKAPNVFKLTPDMEPIPCKPIFFDLAMTYVE 570

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISS

GO:0008312 "7S RNA binding" evidence=ISS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

ZFIN\|ZDB-GENE-040831-3 srp68 "signal recognition particle 68" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P0P4 SRP68 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1917447 Srp68 "signal recognition particle 68" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QQW3 SRP68 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PI42 SRP68 "Signal recognition particle 68 kDa protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q00004 SRP68 "Signal recognition particle 68 kDa protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UHB9 SRP68 "Signal recognition particle 68 kDa protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RW08 SRP68 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V1U4 SRP68 "Signal recognition particle 68 kDa protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VSS2	SRP68_DROME	No assigned EC number	0.5519	0.9737	0.9205	yes	N/A
Q20822	SRP68_CAEEL	No assigned EC number	0.3203	0.9019	0.8279	yes	N/A
Q00004	SRP68_CANFA	No assigned EC number	0.4683	0.9229	0.8472	yes	N/A
Q9UHB9	SRP68_HUMAN	No assigned EC number	0.4672	0.9316	0.8484	yes	N/A
Q8BMA6	SRP68_MOUSE	No assigned EC number	0.4673	0.9264	0.8464	yes	N/A
Q1ZXE8	SRP68_DICDI	No assigned EC number	0.2491	0.9369	0.8713	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		571
KOG2460\|consensus		593		100.0
cd09034		345	BRO1_Alix_like Protein-interacting Bro1-like domai	91.85
cd09242		348	BRO1_ScBro1_like Protein-interacting, N-terminal,	91.81
PF03097		377	BRO1: BRO1-like domain; InterPro: IPR004328 The BR	91.19
cd09247		346	BRO1_Alix_like_2 Protein-interacting Bro1-like dom	90.87
cd09241		355	BRO1_ScRim20-like Protein-interacting, N-terminal,	90.78
cd09246		353	BRO1_Alix_like_1 Protein-interacting, N-terminal,	90.52
cd09239		361	BRO1_HD-PTP_like Protein-interacting, N-terminal,	88.5
PF13176		36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	86.53
cd09240		346	BRO1_Alix Protein-interacting, N-terminal, Bro1-li	84.68
PF07719		34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	84.17
PF13374		42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	80.07

>KOG2460\|consensus	Back alignment and domain information

Probab=100.00  E-value=1.1e-118  Score=934.58  Aligned_cols=526  Identities=45%  Similarity=0.690  Sum_probs=475.2

Q ss_pred             cchhHHHHHHHHHHhcCcCchhhHHHHhHHHHHHHHHhhhcCCCCCCCCCcccccCCccccC--CccchHHHHHHHHHHH
Q psy2472          31 YTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQGDKRHFKKREVTEQHLK--DEKFIYIPLMLAERAW  108 (571)
Q Consensus        31 ~~l~vl~~i~~~q~qhGLrh~DY~RYr~ycsrRL~rLRk~L~~~~g~~kky~~k~it~e~~~--d~r~l~llLl~AERaW  108 (571)
                      -++.+|++++++|+|||||||||+|||+||++|++|+||+++|++|+.+||..+.||-...+  |.+||.+|++++||+|
T Consensus        18 ~t~~iL~~~kd~qqqHgLrhGd~qryR~yC~~~l~r~rKal~f~~gn~~k~~s~~v~~~~~~~~~~q~l~~~~~e~era~   97 (593)
T KOG2460|consen   18 RTLEILQTIKDAQQQHGLRHGDFQRYRGYCSRRLRRLRKALKFKNGNYGKFKSKDVTNKLKTLHDIQFLILPLAEAERAY   97 (593)
T ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhHhhhhhhhhhhhhhhhHHHHH
Confidence            38999999999999999999999999999999999999999999999999999988876555  9999999999999999


Q ss_pred             HHHHH-HHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhh-hcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2472         109 GYAMQ-LRQEANTEPRKKFHLVSRLRKAASYAVQLQTLCEA-EVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKE  186 (571)
Q Consensus       109 AyAme-LK~~~~~~~r~R~h~~~RLkKA~~~A~~L~~l~~~-~~~d~~t~lEa~AY~~~i~G~l~~E~~~W~~Al~~~~~  186 (571)
                      ||||+ +|++.|++||+|+|+++||||||+||++|+++|++ ++.|++|+|||+||++||.|.+.||+++|+.|.+.|+.
T Consensus        98 Aeam~~~~Qe~n~e~rkrfhll~rLrkA~~~A~eL~~~~q~~e~~Da~tkLEA~Ayaa~m~G~lnfE~r~Wk~a~ea~~~  177 (593)
T KOG2460|consen   98 AEAMQLAKQEGNTESRKRFHLLNRLRKAVKHADELVNLTQNEERFDARTKLEAQAYAAYMEGMLNFERRKWKDAAEAFNN  177 (593)
T ss_pred             HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHhhhhhhHHhHHhHHHHHHH
Confidence            99999 99999999999999999999999999999999997 68999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc-HHHHHHHHHHHHhhchhhhHhhhhcCCcc---chhHHHHHhhhhhhh---hHhhhhHhhh-hhhhh
Q psy2472         187 AQVVYEKLMSALN-EEDALLYKQKVEELTPSLRYCAYNIGDQA---GIEDLMQLRSQTHGD---LLHSLDSLMI-QSKEH  258 (571)
Q Consensus       187 ar~iy~~L~~~~~-~~~~~l~~~~~~eidp~lRycay~l~~~~---~~~~l~~~r~~~~~~---l~~~~d~~~~-~~~~~  258 (571)
                      |+.+|+.|+.+.+ +.++.+|+.++++|+|+|||||||++.+.   .+++||++|.+.|++   +.+++|.++. +++++
T Consensus       178 ~klvye~L~~a~~~e~~~~v~~~~vneiqpnLRycA~Ni~~~~~~~~i~Elmq~r~~~dee~~~~~~svd~lis~~t~te  257 (593)
T KOG2460|consen  178 AKLVYEKLAHAKNLELEESVYDNRVNEIQPNLRYCAYNIIGPESNGFIDELMQSREQKDEELVKLLESVDFLISIQTSTE  257 (593)
T ss_pred             HHHHHHHHHhhcCchhHHHHHHHHHHhcChhHHHHhhhccCccccchHHHHHHhhccCCchhhhhhhccchhhhcchhhh
Confidence            9999999999988 67899999999999999999999996443   689999999887665   6678888777 55556


Q ss_pred             hhccceeEEEccccccccCHHHHHHHHHHHHHHHHhhhhc--hhhHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy2472         259 SAEVLSEVSWRGRSVAVRSERVRVFLLAERSLDASLGQAG--ADKIELLESHLMDCKDAIQVIKEEVKQDPNSKNRTQGS  336 (571)
Q Consensus       259 ~~~~~~~I~Wr~~~~~i~~~~v~~~l~~~~~~~~~l~~~~--~~~~~~yd~~l~~~~dA~~~~k~~l~~~~~~~~~~~d~  336 (571)
                      +.+.+++|+|||++|+|.+++|+++|..+++.+.+|.+++  +.+++.|+++++.|.||++.++|++.-+++.++     
T Consensus       258 s~~~~t~IeWRg~kvkV~~~kV~~fL~~~~d~~~~l~q~~t~~~K~~llEkala~~edaI~~v~D~~~~d~~~~~-----  332 (593)
T KOG2460|consen  258 SSATTTTIEWRGRKVKVIDEKVRQFLLQGLDIEPALAQITTYDQKLSLLEKALARCEDAIQNVRDEIKIDEKQRN-----  332 (593)
T ss_pred             hhcceeEEEecCcccccccHHHHHHHHHHHhhcHHhccCCCHhHHHHHHHHHHHHHHHHHHHHhhhcccchHhhh-----
Confidence            6678999999999999999999999999999999998875  889999999999999999999999887654332     


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchH
Q psy2472         337 GLSSLQYLHSYLMYIRLERTIQRNLLLAQQAKDNLKTAGNGQQPSEGKKTRPQDLVRLYEIILQNLGELQQLSGMEDDAQ  416 (571)
Q Consensus       337 ~~~~lq~l~~yi~y~~l~~~ieRn~~Li~~~~~~~~~~~~~~~~~~~k~~k~~eivrLyd~ilq~l~ei~eLpgv~~D~~  416 (571)
                      ...+.|++++|+.|+++.+||.||..++..++..|...   +++..+|+ +|+|+.||||+|+||+.+|+||||+++|+.
T Consensus       333 ~t~~~q~i~aYL~Y~~l~~tisR~~~~~~n~~~~~ls~---~~~~~~k~-rpqdl~RLYd~iiknl~e~~elPG~~~D~~  408 (593)
T KOG2460|consen  333 STLNGQIILAYLKYNKLLTTISRNEDAFTNLWNQWLSQ---QTSDPKKL-RPQDLERLYDSIIKNLSEIMELPGLESDKE  408 (593)
T ss_pred             hhhcchHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHh---Cccccccc-CHHHHHHHHHHHHHHHHHHHhCCCcccchH
Confidence            34568889999999999999999999999999999875   33333344 999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccCCCCCCccchH-HHHHHHHHHHhhhHHHHH
Q psy2472         417 YQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGELATLK-PELATLEAAIDSNKYSAL  495 (571)
Q Consensus       417 l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~~~~~~~~~l~-~~l~~L~~~i~~~~~~~~  495 (571)
                      +.++++++..||+|+||||||.+|+..+||+||+|||+||..+++++.+.+ .++ .+.+. ..+.++..++++.+++++
T Consensus       409 l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l-~s~-~e~l~~~~~~eli~el~k~k~s~~  486 (593)
T KOG2460|consen  409 LQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSEL-ESF-KESLLPLLLLELISELQKRKESLG  486 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hch-hhcccchHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999877 655 33333 778889999999999999


Q ss_pred             HHHhhcccCCCCCCCCCcCCCCCcccCCcccccccccCCCCCCCCCCCcceeCCCCCcccCCCcchhhcccccccC
Q psy2472         496 AYSVLGTEGTPDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLASKSPNVIKLPPDMQPIPAKPLFFDLAQNQLEF  571 (571)
Q Consensus       496 A~~~le~~~~~~~~~~~~~~~~~~~~~~~LiE~Ld~~~~~~~~~~~~~nlv~~PP~~~pVp~KPlfFDlA~NyI~y  571 (571)
                      |.+++.+.....+..+.+.    ..+++||+|+||.|..++++.++.||++++||.|+||||||+|||||+|||+|
T Consensus       487 a~~il~a~~a~~tnt~~sq----~k~~~pLvE~lds~k~~~~l~~k~~n~~~l~P~~~PIP~KPlFFDLA~~yl~~  558 (593)
T KOG2460|consen  487 AAVILLAEYAKRTNTGGSQ----GKDNLPLVETLDSYKLDLSLDTKLPNLFPLPPDFLPIPCKPLFFDLAFNYLTY  558 (593)
T ss_pred             hhhhhhhccchhcCCcccc----CCCcccHHHHHHHhcccchhhhccCccccCCcccccCCCcchHHHHHHHhhcC
Confidence            9998887654443322222    23789999999999977777778899999999999999999999999999986

>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains	Back alignment and domain information

>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins	Back alignment and domain information

>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome	Back alignment and domain information

>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily	Back alignment and domain information

>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins	Back alignment and domain information

>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily	Back alignment and domain information

>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains	Back alignment and domain information

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A	Back alignment and domain information

>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains	Back alignment and domain information

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]	Back alignment and domain information

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		571
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 55.2 bits (132), Expect = 4e-08
 Identities = 83/619 (13%), Positives = 181/619 (29%), Gaps = 228/619 (36%)

Query: 13  NAVKVQPKETPAAKPKVVYTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIR---RLRK 69
           + +K + ++   +    +Y            +Q    + D Q +  Y   R++   +LR+
Sbjct: 96  SPIKTEQRQP--SMMTRMYI-----------EQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 70  TLHLPQGDKRHFKKREVTEQHLKDEKFIYIPLMLAERAWGYAMQLRQEANTEPRKKFHLV 129
            L                   L+  K + I  +L     G               K  + 
Sbjct: 143 AL-----------------LELRPAKNVLIDGVL-----GSG-------------KTWVA 167

Query: 130 SRLRKAASYAVQLQTLCEAEVC-DARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQ 188
                              +VC   + + +    + W+       LK   S    L+  Q
Sbjct: 168 ------------------LDVCLSYKVQCKMDFKIFWL------NLKNCNSPETVLEMLQ 203

Query: 189 VVYEKLMSALNE--EDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQTHGDLLH 246
            +  ++        + +   K ++  +   LR              L++ +   +  LL 
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-------------RLLKSKPYENC-LL- 248

Query: 247 SLDSLMIQSKEH------SAEVLSEVSWRGRSVA--VRSERVRVFLLAERSLDASLGQAG 298
            L +  +Q+ +       S ++L  ++ R + V   + +       L   S+  +  +  
Sbjct: 249 VLLN--VQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV- 303

Query: 299 ADKIELLESHL-MDCKD-----------AIQVIKEEVKQDPNSKNRTQGSGLSSLQYLHS 346
                LL  +L    +D            + +I E ++                  + H 
Sbjct: 304 ---KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL---ATWD-------NWKH- 349

Query: 347 YLMYIRLERTIQRNLLLAQQAKDNLKTAGNGQQPSEGKKTR------PQD-------LVR 393
            +   +L   I+ +L       + L+       P+E +K        P         L  
Sbjct: 350 -VNCDKLTTIIESSL-------NVLE-------PAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 394 L-----YEIILQNLGELQQLSGMEDDAQ------YQESVEVRTKT-------------YK 429
           +        ++  + +L + S +E   +          +E++ K              Y 
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 430 AFRCF------------YI-------------AESLAALR------RWRDCVALYSRATA 458
             + F            Y               E +   R      R+ +   +  R  +
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKI--RHDS 511

Query: 459 YASDAASSLPSSGELATLKPELATLEAAI--DSNKYSALAYSVLGTEGTPDTEPGTVAKP 516
            A +A+ S+     L TL+ +L   +  I  +  KY  L  ++L  +  P  E   +   
Sbjct: 512 TAWNASGSI-----LNTLQ-QLKFYKPYICDNDPKYERLVNAIL--DFLPKIEENLICSK 563

Query: 517 GAKLKKVPLAERLGEYYED 535
              L ++ L       +E+
Sbjct: 564 YTDLLRIALMAEDEAIFEE 582

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		571
3rau_A		363	Tyrosine-protein phosphatase non-receptor type 23;	87.37
3c3r_A		380	Programmed cell death 6-interacting protein; ALIX	84.84
1zb1_A		392	BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking	84.63

>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}	Back alignment and structure

Probab=87.37  E-value=2.5  Score=43.78  Aligned_cols=97  Identities=14%  Similarity=0.202  Sum_probs=68.7

Q ss_pred             hHHHHHHHHHHHHHHHhh--ccCCCCchHHHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccC
Q psy2472         390 DLVRLYEIILQNLGELQQ--LSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSL  467 (571)
Q Consensus       390 eivrLyd~ilq~l~ei~e--Lpgv~~D~~l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~  467 (571)
                      +...+|+.....+.....  +.| .-+.++..-+..+..+|+|.=+|+.|......+|+-||++-++.|...+.++.+..
T Consensus       211 q~~~~Y~~a~~~l~~~~~~~~~~-~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~  289 (363)
T 3rau_A          211 QVVDYYKEACRALENPDTASLLG-RIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEAIKLA  289 (363)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            355566666555543210  111 12578899999999999999999999999999999999999999999999998754


Q ss_pred             CCCCCccchHHHHHHHHHHHhh
Q psy2472         468 PSSGELATLKPELATLEAAIDS  489 (571)
Q Consensus       468 ~~~~~~~~l~~~l~~L~~~i~~  489 (571)
                       ... +..+...+..+.+.|+.
T Consensus       290 -k~~-~~~~~~~~~~~~~~i~~  309 (363)
T 3rau_A          290 -KGQ-PDTVQDALRFTMDVIGG  309 (363)
T ss_dssp             -TTC-CHHHHHHHHHHHHHHHH
T ss_pred             -cCC-chhHHHHHHHHHHHHHH
Confidence             322 33444445555444444

PyMOL of 3rau

>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A	Back alignment and structure

>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00