Psyllid ID: psy2484

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MEIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVPPSGYLAQPALPPNCYPLHQY
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHccEEEEccccHHHHHccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHccEEEEEccHHHHHHHHccccccHHHcccccccccccccccccccccEEEEccccHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
meigsslnghvdNVSLLQEICAKYNLWLhlrghnlsslalnshspsplqpghsvslplgtwlnlplslpspartqrvppsgylaqpalppncyplhqy
Flexible Loop (DISEMBL)
meigsslnghvDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVPPSgylaqpalppncyplhqy
Low Complexity Region (SEG)
MEIGSSLNGHVDNVSLLQEICAKYNLWLHLRGhnlsslalnshspsplQPGHSVSLPLGTWLNLPLSLPSPARTQRVPPSGYLAQPALPPNCYPLHQY
Disordered region (IsUnstruct)
*********HVDNVSLLQEICAKYNLWLHLRGHNLSSL*****************LPLGTWLNLP*********************************
Disordered Region (DISOPRED)
**IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVPPSGYLAQPALPPNCYPL***
Disordered Region (DISEMBL)
********GHVDNVSLLQEICAKYNLWLHLRGHNLSSLALN***********SVSLPLGTWLNLPLSLPSPARTQRVPPSGYLAQPALPPNCYPLHQY
Disordered Region (DISPRO)
*****SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVPPSGYLAQPALPPNCYPL*Q*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVPPSGYLAQPALPPNCYPLHQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q6DF78	782	Pyridoxal-dependent decar	N/A	N/A	0.581	0.072	0.474	4e-08
A7MBC2	787	Pyridoxal-dependent decar	yes	N/A	0.632	0.078	0.421	1e-07
Q99K01	787	Pyridoxal-dependent decar	no	N/A	0.632	0.078	0.421	1e-07
Q6P474	469	Putative pyridoxal-depend	yes	N/A	0.632	0.132	0.406	2e-07
Q6P996	788	Pyridoxal-dependent decar	yes	N/A	0.632	0.078	0.406	2e-07
Q66HY8	751	Pyridoxal-dependent decar	yes	N/A	0.581	0.075	0.423	7e-07

>sp|Q6DF78|PDXD1_XENLA Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Xenopus laevis GN=pdxdc1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 9   GHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGH--SVSLPLGTWLNLP 65
           GH D +  L+E+C +YN+WLH+ G NL++LAL   S S L      S++L LG WL LP
Sbjct: 250 GHTDKLGRLKELCDQYNIWLHVEGVNLATLALGYVSSSVLAATKCDSMTLTLGPWLGLP 308

Xenopus laevis (taxid: 8355)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|A7MBC2|PDXD1_BOVIN Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Bos taurus GN=PDXDC1 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 4   GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPL--GTW 61
           G++  GH D +  L+E+C +Y +WLH+ G NL++LAL   S S L      S+ L  G W
Sbjct: 244 GTAAVGHTDKIGRLKEVCEQYGIWLHVEGVNLATLALGYVSSSVLAATKCDSMTLTPGPW 303

Query: 62  LNLP 65
           L LP
Sbjct: 304 LGLP 307

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q99K01|PDXD1_MOUSE Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Mus musculus GN=Pdxdc1 PE=1 SV=2

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 4   GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPL--GTW 61
           G++  GH D +  L+E+C +Y +WLH+ G NL++LAL   S S L      S+ L  G W
Sbjct: 243 GTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAATKCDSMTLTPGLW 302

Query: 62  LNLP 65
           L LP
Sbjct: 303 LGLP 306

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6P474|PDXD2_HUMAN Putative pyridoxal-dependent decarboxylase domain-containing protein 2 OS=Homo sapiens GN=PDXDC2P PE=5 SV=3

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 4   GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPL--GTW 61
           G++  GH D +  L+E+C +Y +WLH+ G NL++LAL   S S L      S+ +  G W
Sbjct: 243 GTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAAAKCDSMTMTPGPW 302

Query: 62  LNLP 65
           L LP
Sbjct: 303 LGLP 306

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6P996|PDXD1_HUMAN Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Homo sapiens GN=PDXDC1 PE=1 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 4   GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPL--GTW 61
           G++  GH D +  L+E+C +Y +WLH+ G NL++LAL   S S L      S+ +  G W
Sbjct: 243 GTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAAAKCDSMTMTPGPW 302

Query: 62  LNLP 65
           L LP
Sbjct: 303 LGLP 306

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q66HY8|PDXD1_DANRE Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Danio rerio GN=pdxdc1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 9   GHVDNVSLLQEICAKYNLWLHLRGHNLSSLALN--SHSPSPLQPGHSVSLPLGTWLNLP 65
           GH D +S L+E+C +YN+WLH+ G NL++L L   S + +      S++L  G WL LP
Sbjct: 232 GHTDKLSRLKELCVQYNMWLHVEGVNLATLVLGQVSSTVTAATKCDSMTLTPGPWLGLP 290

Danio rerio (taxid: 7955)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
332022029	808	Pyridoxal-dependent decarboxylase domain	0.683	0.082	0.550	2e-13
340728508	800	PREDICTED: pyridoxal-dependent decarboxy	0.683	0.083	0.565	3e-13
350424592	798	PREDICTED: pyridoxal-dependent decarboxy	0.683	0.083	0.565	3e-13
383855170	798	PREDICTED: pyridoxal-dependent decarboxy	0.683	0.083	0.550	3e-13
328788766	797	PREDICTED: pyridoxal-dependent decarboxy	0.683	0.084	0.565	6e-13
380027761	798	PREDICTED: pyridoxal-dependent decarboxy	0.683	0.083	0.565	6e-13
307201067	810	Pyridoxal-dependent decarboxylase domain	0.683	0.082	0.536	1e-12
307168915	823	Pyridoxal-dependent decarboxylase domain	0.683	0.081	0.443	1e-11
345487627	817	PREDICTED: pyridoxal-dependent decarboxy	0.683	0.082	0.521	5e-11
345487629	802	PREDICTED: pyridoxal-dependent decarboxy	0.683	0.083	0.521	5e-11

>gi|332022029|gb|EGI62355.1| Pyridoxal-dependent decarboxylase domain-containing protein 1 [Acromyrmex echinatior]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 2/69 (2%)

Query: 2   EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPS-PLQPGHSVSLPLGT 60
           E GS L GH DN++ L+ IC KYN+WLHLRGH+L++LALN+ +   P +   S++LPLGT
Sbjct: 281 EAGSVLTGHCDNITRLRAICDKYNVWLHLRGHSLAALALNNSAKDLPSKIADSITLPLGT 340

Query: 61  WLNLPLSLP 69
           W  +P SLP
Sbjct: 341 WFGIP-SLP 348

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728508|ref|XP_003402564.1| PREDICTED: pyridoxal-dependent decarboxylase domain-containing protein 1-like [Bombus terrestris]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 2/69 (2%)

Query: 2   EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPS-PLQPGHSVSLPLGT 60
           E GS L GH DN++ L+ IC KYN+WLHLRGH+L++LALN+ +   P +   SV+LPLG 
Sbjct: 273 EAGSVLTGHCDNIARLRAICDKYNVWLHLRGHSLAALALNNSAKDLPSKVADSVTLPLGI 332

Query: 61  WLNLPLSLP 69
           WL +P SLP
Sbjct: 333 WLGIP-SLP 340

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424592|ref|XP_003493847.1| PREDICTED: pyridoxal-dependent decarboxylase domain-containing protein 1-like [Bombus impatiens]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 2/69 (2%)

Query: 2   EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPS-PLQPGHSVSLPLGT 60
           E GS L GH DN++ L+ IC KYN+WLHLRGH+L++LALN+ +   P +   SV+LPLG 
Sbjct: 271 EAGSVLTGHCDNIARLRAICDKYNVWLHLRGHSLAALALNNSAKDLPSKIADSVTLPLGI 330

Query: 61  WLNLPLSLP 69
           WL +P SLP
Sbjct: 331 WLGIP-SLP 338

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855170|ref|XP_003703090.1| PREDICTED: pyridoxal-dependent decarboxylase domain-containing protein 1-like [Megachile rotundata]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 2/69 (2%)

Query: 2   EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPS-PLQPGHSVSLPLGT 60
           E GS L GH DN++ L+ IC KYN+WLHLRGH+L++LALN+ +   P +   S++LPLG 
Sbjct: 271 EAGSVLTGHCDNIARLRAICDKYNVWLHLRGHSLAALALNNSAKDLPSKIADSITLPLGV 330

Query: 61  WLNLPLSLP 69
           WL +P SLP
Sbjct: 331 WLGIP-SLP 338

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788766|ref|XP_393418.3| PREDICTED: pyridoxal-dependent decarboxylase domain-containing protein 1-like [Apis mellifera]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 2/69 (2%)

Query: 2   EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPS-PLQPGHSVSLPLGT 60
           E GS L GH DN++ L+ IC KYN+WLHLRGH+L++LALN+ +   P +   SV+LPLG 
Sbjct: 270 EGGSVLTGHCDNIARLRAICDKYNVWLHLRGHSLAALALNNSAKDLPSKIADSVTLPLGI 329

Query: 61  WLNLPLSLP 69
           WL +P SLP
Sbjct: 330 WLGIP-SLP 337

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027761|ref|XP_003697587.1| PREDICTED: pyridoxal-dependent decarboxylase domain-containing protein 1-like [Apis florea]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 2/69 (2%)

Query: 2   EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPS-PLQPGHSVSLPLGT 60
           E GS L GH DN++ L+ IC KYN+WLHLRGH+L++LALN+ +   P +   SV+LPLG 
Sbjct: 271 EGGSVLTGHCDNIARLRAICDKYNVWLHLRGHSLAALALNNSAKDLPSKIADSVTLPLGI 330

Query: 61  WLNLPLSLP 69
           WL +P SLP
Sbjct: 331 WLGIP-SLP 338

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201067|gb|EFN80999.1| Pyridoxal-dependent decarboxylase domain-containing protein 1 [Harpegnathos saltator]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 50/69 (72%), Gaps = 2/69 (2%)

Query: 2   EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPS-PLQPGHSVSLPLGT 60
           E GS L GH DN++ L+ IC KYN+WLHLRGH+L++L LN+ +   P +   S++LPLG 
Sbjct: 281 EAGSVLTGHCDNITRLRAICDKYNVWLHLRGHSLAALVLNNSAKDLPSKIADSITLPLGV 340

Query: 61  WLNLPLSLP 69
           WL +P SLP
Sbjct: 341 WLGIP-SLP 348

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168915|gb|EFN61815.1| Pyridoxal-dependent decarboxylase domain-containing protein 1 [Camponotus floridanus]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 21/88 (23%)

Query: 2   EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPS--------------- 46
           E GS L GH DN++ L+ IC KYN+WLHLRGH+L++LALN+ +                 
Sbjct: 275 EAGSVLTGHCDNITRLRAICDKYNVWLHLRGHSLAALALNNSTKDLVNGRMVLFTKFCNN 334

Query: 47  -----PLQPGHSVSLPLGTWLNLPLSLP 69
                P +   S++LPLGTWL +P SLP
Sbjct: 335 STKDLPSKIADSITLPLGTWLGIP-SLP 361

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487627|ref|XP_003425730.1| PREDICTED: pyridoxal-dependent decarboxylase domain-containing protein 1-like isoform 2 [Nasonia vitripennis]

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 2/69 (2%)

Query: 2   EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPS-PLQPGHSVSLPLGT 60
           E GS L GH DN+S L+EIC K+N+WLHLRG +L++L LN+ +     +   S++LPLG 
Sbjct: 280 EAGSVLTGHCDNLSRLREICDKHNVWLHLRGDSLAALTLNNSAKDLSSKIADSITLPLGV 339

Query: 61  WLNLPLSLP 69
           WL +P SLP
Sbjct: 340 WLGIP-SLP 347

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487629|ref|XP_001604406.2| PREDICTED: pyridoxal-dependent decarboxylase domain-containing protein 1-like isoform 1 [Nasonia vitripennis]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 2/69 (2%)

Query: 2   EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPS-PLQPGHSVSLPLGT 60
           E GS L GH DN+S L+EIC K+N+WLHLRG +L++L LN+ +     +   S++LPLG 
Sbjct: 265 EAGSVLTGHCDNLSRLREICDKHNVWLHLRGDSLAALTLNNSAKDLSSKIADSITLPLGV 324

Query: 61  WLNLPLSLP 69
           WL +P SLP
Sbjct: 325 WLGIP-SLP 332

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
FB|FBgn0031174	852	CG1486 [Drosophila melanogaste	0.683	0.078	0.382	4.5e-08
UNIPROTKB|E1C4Q3	794	PDXDC1 "Uncharacterized protei	0.724	0.089	0.310	3.1e-05
ZFIN|ZDB-GENE-040912-16	766	pdxdc1 "pyridoxal-dependent de	0.765	0.097	0.307	0.0001
UNIPROTKB|H3BNL6	271	PDXDC1 "Pyridoxal-dependent de	0.632	0.228	0.281	0.00021
UNIPROTKB|F1LTX6	383	Pdxdc1 "Protein Pdxdc1" [Rattu	0.673	0.172	0.289	0.00023
UNIPROTKB|Q6P474	469	PDXDC2P "Putative pyridoxal-de	0.673	0.140	0.275	0.00039
UNIPROTKB|Q86XE2	498	PDXDC1 "Pyridoxal-dependent de	0.673	0.132	0.275	0.00043
UNIPROTKB|A7MBC2	787	PDXDC1 "Pyridoxal-dependent de	0.673	0.083	0.289	0.00047
UNIPROTKB|F1M5Z2	709	Pdxdc1 "Protein Pdxdc1" [Rattu	0.673	0.093	0.289	0.00053
UNIPROTKB|F1M024	784	Pdxdc1 "Protein Pdxdc1" [Rattu	0.673	0.084	0.289	0.00059

FB|FBgn0031174 CG1486 [Drosophila melanogaster (taxid:7227)]

 Score = 131 (51.2 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
 Identities = 26/68 (38%), Positives = 40/68 (58%)

Query:     2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGXXXXXXXXXXXXXXXXQPGHSVSLPLGTW 61
             +IG+SL G+VDN+  L+++C  +N+WLH  G                +  HS++L LG+W
Sbjct:   272 DIGASLCGYVDNLLRLRDVCKAHNMWLHASGHGLAALVCAQNQGHVEEVLHSMALNLGSW 331

Query:    62 LNLPLSLP 69
             L +P SLP
Sbjct:   332 LGVP-SLP 338

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

UNIPROTKB|E1C4Q3 PDXDC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 110 (43.8 bits), Expect = 3.1e-05, P = 3.1e-05
 Identities = 23/74 (31%), Positives = 36/74 (48%)

Query:     9 GHVDNVSLLQEICAKYNLWLHLRGXXXXXXXXXXXXXX--XXQPGHSVSLPLGTWLNLPL 66
             GH D +  L+E+C +YN+WLH+ G                      S++L LG+WL LP 
Sbjct:   252 GHTDKLGRLKELCEQYNMWLHVEGVNLATLALGYVSSSVLAATKCDSMTLTLGSWLGLP- 310

Query:    67 SLPSPARTQRVPPS 80
             ++P+    +   PS
Sbjct:   311 AVPAVTLYKHEDPS 324

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

ZFIN|ZDB-GENE-040912-16 pdxdc1 "pyridoxal-dependent decarboxylase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 105 (42.0 bits), Expect = 0.00010, P = 0.00010
 Identities = 24/78 (30%), Positives = 37/78 (47%)

Query:     9 GHVDNVSLLQEICAKYNLWLHLRGXXXXXXXXX--XXXXXXXQPGHSVSLPLGTWLNLPL 66
             GH D +S L+E+C +YN+WLH+ G                      S++L  G WL LP 
Sbjct:   247 GHTDKLSRLKELCVQYNMWLHVEGVNLATLVLGQVSSTVTAATKCDSMTLTPGPWLGLP- 305

Query:    67 SLPSPARTQRVPPSGYLA 84
             ++P+    +   P+  LA
Sbjct:   306 AVPAVTLYRHEDPALSLA 323

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|H3BNL6 PDXDC1 "Pyridoxal-dependent decarboxylase domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 96 (38.9 bits), Expect = 0.00021, P = 0.00021
 Identities = 18/64 (28%), Positives = 29/64 (45%)

Query:     4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGXXXXXXXXXXXXXXXXQPGH--SVSLPLGTW 61
             G++  GH D +  L+E+C +Y +WLH+ G                      S+++  G W
Sbjct:   205 GTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAAAKCDSMTMTPGPW 264

Query:    62 LNLP 65
             L LP
Sbjct:   265 LGLP 268

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F1LTX6 Pdxdc1 "Protein Pdxdc1" [Rattus norvegicus (taxid:10116)]

 Score = 98 (39.6 bits), Expect = 0.00023, P = 0.00023
 Identities = 20/69 (28%), Positives = 33/69 (47%)

Query:     4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGXXXXXXXXXXXXXX--XXQPGHSVSLPLGTW 61
             G++  GH D +  L+E+C +Y +WLH+ G                      S++L  G W
Sbjct:   242 GTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAATKCDSMTLTPGLW 301

Query:    62 LNLPLSLPS 70
             L LP ++P+
Sbjct:   302 LGLP-AVPA 309

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q6P474 PDXDC2P "Putative pyridoxal-dependent decarboxylase domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 97 (39.2 bits), Expect = 0.00039, P = 0.00039
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query:     4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGXXXXXXXXXXXXXXXXQPGH--SVSLPLGTW 61
             G++  GH D +  L+E+C +Y +WLH+ G                      S+++  G W
Sbjct:   243 GTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAAAKCDSMTMTPGPW 302

Query:    62 LNLPLSLPS 70
             L LP ++P+
Sbjct:   303 LGLP-AVPA 310

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

UNIPROTKB|Q86XE2 PDXDC1 "Pyridoxal-dependent decarboxylase domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 97 (39.2 bits), Expect = 0.00043, P = 0.00043
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query:     4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGXXXXXXXXXXXXXXXXQPGH--SVSLPLGTW 61
             G++  GH D +  L+E+C +Y +WLH+ G                      S+++  G W
Sbjct:   243 GTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAAAKCDSMTMTPGPW 302

Query:    62 LNLPLSLPS 70
             L LP ++P+
Sbjct:   303 LGLP-AVPA 310

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|A7MBC2 PDXDC1 "Pyridoxal-dependent decarboxylase domain-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 99 (39.9 bits), Expect = 0.00047, P = 0.00047
 Identities = 20/69 (28%), Positives = 33/69 (47%)

Query:     4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGXXXXXXXXXXXXXX--XXQPGHSVSLPLGTW 61
             G++  GH D +  L+E+C +Y +WLH+ G                      S++L  G W
Sbjct:   244 GTAAVGHTDKIGRLKEVCEQYGIWLHVEGVNLATLALGYVSSSVLAATKCDSMTLTPGPW 303

Query:    62 LNLPLSLPS 70
             L LP ++P+
Sbjct:   304 LGLP-AVPA 311

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

UNIPROTKB|F1M5Z2 Pdxdc1 "Protein Pdxdc1" [Rattus norvegicus (taxid:10116)]

 Score = 98 (39.6 bits), Expect = 0.00053, P = 0.00053
 Identities = 20/69 (28%), Positives = 33/69 (47%)

Query:     4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGXXXXXXXXXXXXXX--XXQPGHSVSLPLGTW 61
             G++  GH D +  L+E+C +Y +WLH+ G                      S++L  G W
Sbjct:   242 GTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAATKCDSMTLTPGLW 301

Query:    62 LNLPLSLPS 70
             L LP ++P+
Sbjct:   302 LGLP-AVPA 309

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F1M024 Pdxdc1 "Protein Pdxdc1" [Rattus norvegicus (taxid:10116)]

 Score = 98 (39.6 bits), Expect = 0.00059, P = 0.00059
 Identities = 20/69 (28%), Positives = 33/69 (47%)

Query:     4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGXXXXXXXXXXXXXX--XXQPGHSVSLPLGTW 61
             G++  GH D +  L+E+C +Y +WLH+ G                      S++L  G W
Sbjct:   242 GTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAATKCDSMTLTPGLW 301

Query:    62 LNLPLSLPS 70
             L LP ++P+
Sbjct:   302 LGLP-AVPA 309

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	98
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	5e-04

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 4   GSSLNGHVDNVSLLQEICAKYNLWLH 29
           G++ +G  D +  L +IC KY+LWLH
Sbjct: 203 GTTGSGAFDPLQELGDICNKYDLWLH 228

Length = 373

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PLN02590	539	probable tyrosine decarboxylase	99.95
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.93
PLN02880	490	tyrosine decarboxylase	99.93
KOG0629|consensus	510		99.93
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.89
PLN02263	470	serine decarboxylase	99.88
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.88
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.87
PLN03032	374	serine decarboxylase; Provisional	99.78
KOG0628|consensus	511		99.78
PRK02769	380	histidine decarboxylase; Provisional	99.76
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.75
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.4
KOG0630|consensus	838		99.39
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.34
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.06
PRK05367	954	glycine dehydrogenase; Provisional	99.05
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.03
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	98.91
PLN02651	364	cysteine desulfurase	98.83
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	98.8
PRK04366	481	glycine dehydrogenase subunit 2; Validated	98.79
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.78
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	98.76
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	98.71
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	98.7
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	98.61
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	98.49
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	98.48
PTZ00094	452	serine hydroxymethyltransferase; Provisional	98.43
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	98.39
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	98.38
PRK14012	404	cysteine desulfurase; Provisional	98.36
PRK02948	381	cysteine desulfurase; Provisional	98.35
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	98.3
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	98.25
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	98.24
TIGR01814	406	kynureninase kynureninase. This model describes ky	98.19
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	98.17
PLN02414	993	glycine dehydrogenase (decarboxylating)	98.16
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	98.16
PLN03226	475	serine hydroxymethyltransferase; Provisional	98.16
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	98.14
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	98.08
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	98.07
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	98.04
PRK10874	401	cysteine sulfinate desulfinase; Provisional	98.02
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	98.01
PLN02409	401	serine--glyoxylate aminotransaminase	97.98
PLN02721	353	threonine aldolase	97.98
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	97.98
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	97.97
KOG1549|consensus	428		97.93
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	97.89
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	97.87
PRK13034	416	serine hydroxymethyltransferase; Reviewed	97.86
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	97.86
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	97.83
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	97.82
cd00609	350	AAT_like Aspartate aminotransferase family. This f	97.81
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	97.74
KOG1383|consensus	491		97.72
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	97.71
PRK00451	447	glycine dehydrogenase subunit 1; Validated	97.67
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	97.66
PRK13237	460	tyrosine phenol-lyase; Provisional	97.64
PRK03080	378	phosphoserine aminotransferase; Provisional	97.61
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	97.59
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	97.55
PLN02271	586	serine hydroxymethyltransferase	97.52
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	97.51
PRK13580	493	serine hydroxymethyltransferase; Provisional	97.51
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	97.48
KOG1368|consensus	384		97.48
PRK12566	954	glycine dehydrogenase; Provisional	97.46
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	97.43
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	97.41
PLN02724	805	Molybdenum cofactor sulfurase	97.36
PRK07179	407	hypothetical protein; Provisional	97.3
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	97.2
PRK06767	386	methionine gamma-lyase; Provisional	97.18
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	97.13
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	97.09
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	97.05
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	97.03
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	97.0
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	97.0
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	96.93
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	96.89
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	96.88
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	96.86
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	96.85
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	96.81
PLN02509	464	cystathionine beta-lyase	96.74
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	96.74
PRK05939	397	hypothetical protein; Provisional	96.72
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	96.7
PRK07811	388	cystathionine gamma-synthase; Provisional	96.67
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	96.65
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	96.64
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	96.63
PRK04311	464	selenocysteine synthase; Provisional	96.6
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	96.58
PRK07671	377	cystathionine beta-lyase; Provisional	96.56
PRK08574	385	cystathionine gamma-synthase; Provisional	96.53
PRK05968	389	hypothetical protein; Provisional	96.52
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	96.46
PRK07050	394	cystathionine beta-lyase; Provisional	96.38
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	96.36
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	96.35
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	96.31
PLN02242	418	methionine gamma-lyase	96.31
PRK08776	405	cystathionine gamma-synthase; Provisional	96.25
PRK09064	407	5-aminolevulinate synthase; Validated	96.23
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	96.1
PRK08861	388	cystathionine gamma-synthase; Provisional	96.1
PRK13392	410	5-aminolevulinate synthase; Provisional	96.05
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	95.93
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	95.9
PRK07503	403	methionine gamma-lyase; Provisional	95.9
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	95.86
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	95.86
PRK09028	394	cystathionine beta-lyase; Provisional	95.83
PRK08249	398	cystathionine gamma-synthase; Provisional	95.81
PRK07582	366	cystathionine gamma-lyase; Validated	95.81
PRK08064	390	cystathionine beta-lyase; Provisional	95.78
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	95.71
PRK10534	333	L-threonine aldolase; Provisional	95.64
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	95.44
PRK15029	755	arginine decarboxylase; Provisional	95.44
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	95.43
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	95.37
PRK07269	364	cystathionine gamma-synthase; Reviewed	95.23
PRK05367	954	glycine dehydrogenase; Provisional	95.15
PRK06460	376	hypothetical protein; Provisional	95.07
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	94.77
PLN02822	481	serine palmitoyltransferase	94.7
PRK06434	384	cystathionine gamma-lyase; Validated	94.63
PRK03244	398	argD acetylornithine aminotransferase; Provisional	94.6
PRK06234	400	methionine gamma-lyase; Provisional	94.57
PRK08114	395	cystathionine beta-lyase; Provisional	94.52
PRK13393	406	5-aminolevulinate synthase; Provisional	94.27
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	94.21
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	93.96
PRK06225	380	aspartate aminotransferase; Provisional	93.82
PLN02483	489	serine palmitoyltransferase	93.82
PRK08247	366	cystathionine gamma-synthase; Reviewed	93.75
PRK00950	361	histidinol-phosphate aminotransferase; Validated	93.73
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	93.7
PRK06108	382	aspartate aminotransferase; Provisional	93.63
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	93.6
PRK09082	386	methionine aminotransferase; Validated	93.5
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	93.46
PRK05764	393	aspartate aminotransferase; Provisional	93.41
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	93.29
PTZ00125	400	ornithine aminotransferase-like protein; Provision	93.16
PRK07777	387	aminotransferase; Validated	93.1
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	93.07
PLN02414	993	glycine dehydrogenase (decarboxylating)	92.94
PRK08045	386	cystathionine gamma-synthase; Provisional	92.92
PRK08361	391	aspartate aminotransferase; Provisional	92.53
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	92.36
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	92.22
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	92.03
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	91.99
PF05670	90	DUF814: Domain of unknown function (DUF814); Inter	91.45
PRK05967	395	cystathionine beta-lyase; Provisional	91.07
PLN02656	409	tyrosine transaminase	90.72
KOG2467|consensus	477		90.63
PRK07550	386	hypothetical protein; Provisional	90.47
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	90.37
PRK07505	402	hypothetical protein; Provisional	90.33
PRK07568	397	aspartate aminotransferase; Provisional	89.87
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	89.54
PRK08363	398	alanine aminotransferase; Validated	89.52
PRK07682	378	hypothetical protein; Validated	89.4
PRK08912	387	hypothetical protein; Provisional	89.21
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	89.11
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	89.01
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	88.93
PRK07908	349	hypothetical protein; Provisional	88.78
PRK07309	391	aromatic amino acid aminotransferase; Validated	88.77
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	88.7
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	88.37
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	88.23
PRK07324	373	transaminase; Validated	87.96
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	87.62
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	87.24
PRK01278	389	argD acetylornithine transaminase protein; Provisi	86.92
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	86.78
PRK02936	377	argD acetylornithine aminotransferase; Provisional	86.64
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	85.96
PLN00175	413	aminotransferase family protein; Provisional	85.37
PLN02624	474	ornithine-delta-aminotransferase	84.88
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	84.35
PRK12414	384	putative aminotransferase; Provisional	84.32
PRK08056	356	threonine-phosphate decarboxylase; Provisional	84.2
PRK07337	388	aminotransferase; Validated	84.18
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	83.92
PRK05957	389	aspartate aminotransferase; Provisional	83.6
PLN02760	504	4-aminobutyrate:pyruvate transaminase	83.57
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	83.53
PRK15399	713	lysine decarboxylase LdcC; Provisional	83.44
PRK09148	405	aminotransferase; Validated	83.08
PRK02627	396	acetylornithine aminotransferase; Provisional	82.9
PTZ00433	412	tyrosine aminotransferase; Provisional	82.15
PRK07683	387	aminotransferase A; Validated	81.55
PRK13578	720	ornithine decarboxylase; Provisional	81.21
PRK15400	714	lysine decarboxylase CadA; Provisional	80.47
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	80.31

>PLN02590 probable tyrosine decarboxylase

Probab=99.95  E-value=6.4e-29  Score=207.72  Aligned_cols=76  Identities=18%  Similarity=0.307  Sum_probs=66.3

Q ss_pred             CCCcccccccCCChHHHHHHHHHcCceEEeeccc-chhhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           1 MEIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHN-LSSLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         1 ~taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~-~~al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      .|+|||++|+||||.+|++||++||+||||||++ |+++++++.  ++.|+|+||||++|+||||++||.|+ ++++|++
T Consensus       293 aTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg-~llvr~~  371 (539)
T PLN02590        293 ATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCS-PLWVKDR  371 (539)
T ss_pred             EEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEE-EEEecCH
Confidence            3899999999999999999999999999999984 556667766  48999999999999999999998775 5566654

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.93  E-value=5.3e-27  Score=187.14  Aligned_cols=77  Identities=21%  Similarity=0.424  Sum_probs=62.6

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccch-hhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLS-SLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP   78 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~-al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~   78 (98)
                      |+|||.+|++||+++|++||++||+||||||++|+ ++++++.  +..|+++||||++|+||||++|+.| +++++|++.
T Consensus       201 t~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~-~~~l~r~~~  279 (373)
T PF00282_consen  201 TAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGC-GVLLVRDKS  279 (373)
T ss_dssp             EBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS--EEEEESSGG
T ss_pred             cCCCcccccccCHHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccc-eeEEeeccc
Confidence            79999999999999999999999999999998555 5666666  4899999999999999999999766 466777754


Q ss_pred             C
Q psy2484          79 P   79 (98)
Q Consensus        79 ~   79 (98)
                      .
T Consensus       280 ~  280 (373)
T PF00282_consen  280 D  280 (373)
T ss_dssp             G
T ss_pred             c
Confidence            3

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PLN02880 tyrosine decarboxylase

Probab=99.93  E-value=1.3e-27  Score=196.61  Aligned_cols=75  Identities=12%  Similarity=0.216  Sum_probs=65.1

Q ss_pred             CCCcccccccCCChHHHHHHHHHcCceEEeecccch-hhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           1 MEIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLS-SLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         1 ~taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~-al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .|+|||++|++|||++|+++|++||+||||||+.|+ ++.+++.  +++|+++||||++|+||||++|++|+ ++++|+
T Consensus       245 ataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g-~llvr~  322 (490)
T PLN02880        245 ATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCS-LLWVKD  322 (490)
T ss_pred             EecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEE-EEEEeC
Confidence            389999999999999999999999999999998555 4666665  58999999999999999999998776 455554

>KOG0629|consensus

Probab=99.93  E-value=3e-27  Score=195.45  Aligned_cols=86  Identities=22%  Similarity=0.368  Sum_probs=73.8

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhcC-CC--CCCCCccCccccccCccccCCCCCCCeeEEecC--
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALN-SH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR--   76 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~-~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~--   76 (98)
                      |||||+.||+|||..|++||++|++|+||||++|+++.++ ++  ++.|+|+|||++||||||++.|+.|+ +++.|.  
T Consensus       260 TaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCs-a~l~r~~g  338 (510)
T KOG0629|consen  260 TAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCS-AFLTREEG  338 (510)
T ss_pred             cCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCcchhh-HHHHHHHH
Confidence            8999999999999999999999999999999977655555 44  58999999999999999999998775 556664  


Q ss_pred             ------CCCcccccCCCC
Q psy2484          77 ------VPPSGYLAQPAL   88 (98)
Q Consensus        77 ------~~~~~~l~~~~~   88 (98)
                            +..+.||||+.-
T Consensus       339 ll~~Cn~~~A~YLFq~dK  356 (510)
T KOG0629|consen  339 LLQRCNQMSAIYLFQQDK  356 (510)
T ss_pred             HHHhhcccchhhhhccCc
Confidence                  356788888764

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.89  E-value=8.9e-24  Score=173.92  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=73.2

Q ss_pred             CCCcccccccCCChHHHHHHHHHcCceEEeecccchhhh-cCCC--C-CCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           1 MEIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLA-LNSH--S-PSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         1 ~taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~-~~~~--~-~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +|+|||.+|++|||++|++||++|++|||||||.|+.++ +.+.  + .-+++++|||++|+|||+++|++|+.+++++.
T Consensus       213 ~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~  292 (460)
T COG0076         213 GTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDE  292 (460)
T ss_pred             EEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECH
Confidence            379999999999999999999999999999998555544 7766  4 57999999999999999999998875555444


Q ss_pred             CCC--cccccCCCCCC
Q psy2484          77 VPP--SGYLAQPALPP   90 (98)
Q Consensus        77 ~~~--~~~l~~~~~~~   90 (98)
                      +..  ...+..+++|.
T Consensus       293 e~l~~~~~~~~~yl~~  308 (460)
T COG0076         293 EALRRILIFADYYLPG  308 (460)
T ss_pred             HHhhhhhhcccccCCC
Confidence            233  34445788874

>PLN02263 serine decarboxylase

Probab=99.88  E-value=1.2e-23  Score=174.23  Aligned_cols=75  Identities=19%  Similarity=0.322  Sum_probs=62.2

Q ss_pred             CCCcccccccCCChHHHHHHHHHcCc-----eEEeecccchhhh-cCCC--CCCCCccCccccccCccccCCCCCCCeeE
Q psy2484           1 MEIGSSLNGHVDNVSLLQEICAKYNL-----WLHLRGHNLSSLA-LNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPA   72 (98)
Q Consensus         1 ~taGtt~~Ga~D~l~~i~~ic~~~~l-----WlHVDga~~~al~-~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~l   72 (98)
                      .|+|||.+|++|||++|++||++||+     ||||||++|+..+ +.+.  ++++.+.+|||++|+|||+++|+.|++ +
T Consensus       234 ataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgv-l  312 (470)
T PLN02263        234 VNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGV-Q  312 (470)
T ss_pred             EEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCCCcCEEE-E
Confidence            37999999999999999999999997     9999999655543 2222  477888899999999999999987764 4


Q ss_pred             EecC
Q psy2484          73 RTQR   76 (98)
Q Consensus        73 l~r~   76 (98)
                      ++|+
T Consensus       313 l~R~  316 (470)
T PLN02263        313 ITRM  316 (470)
T ss_pred             EEeh
Confidence            5554

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.88  E-value=5.6e-24  Score=180.40  Aligned_cols=77  Identities=18%  Similarity=0.217  Sum_probs=63.3

Q ss_pred             CCCcccccccCCChHHHHHHH---HHcCc--eEEeecccchh---hhcC------------------------------C
Q psy2484           1 MEIGSSLNGHVDNVSLLQEIC---AKYNL--WLHLRGHNLSS---LALN------------------------------S   42 (98)
Q Consensus         1 ~taGtt~~Ga~D~l~~i~~ic---~~~~l--WlHVDga~~~a---l~~~------------------------------~   42 (98)
                      .|+|||.+|+||||.+|++||   +++|+  |||||||+|+.   ++++                              +
T Consensus       284 ataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~  363 (608)
T TIGR03811       284 GVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISRE  363 (608)
T ss_pred             EEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHh
Confidence            389999999999999999999   67998  69999996653   4443                              1


Q ss_pred             C--CCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484          43 H--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP   78 (98)
Q Consensus        43 ~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~   78 (98)
                      .  +++|+++|||||+|||||+++||.|+ ++++|+..
T Consensus       364 ~~~~l~gle~ADSItvDpHK~g~~Py~~G-~ll~Rd~~  400 (608)
T TIGR03811       364 VYNAYKAISEAESVTIDPHKMGYIPYSAG-GIVIQDIR  400 (608)
T ss_pred             HHHHHhcCcCceEEEeCcccccccCCCeE-EEEEeCHH
Confidence            1  37899999999999999999998776 55666543

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.87  E-value=5.1e-23  Score=171.30  Aligned_cols=75  Identities=15%  Similarity=0.193  Sum_probs=64.1

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchh-hhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSS-LALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~a-l~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      |+|||.+|++|||++|+++|++||+||||||+.|++ +.+++.  +++|+++|||+++|+||||++|++|++ +++|++
T Consensus       272 taGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~-llvr~~  349 (522)
T TIGR03799       272 VAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGM-VLFKDP  349 (522)
T ss_pred             EecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEE-EEEeCH
Confidence            689999999999999999999999999999986554 444444  489999999999999999999988764 555553

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PLN03032 serine decarboxylase; Provisional

Probab=99.78  E-value=2.1e-19  Score=144.52  Aligned_cols=74  Identities=23%  Similarity=0.371  Sum_probs=59.1

Q ss_pred             CCcccccccCCChHHHHHHHHHcC-----ceEEeecccchh-hhcCCC--CCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYN-----LWLHLRGHNLSS-LALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~-----lWlHVDga~~~a-l~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      |+|||.+|++||+++|++||++||     +||||||+.|++ +.+.+.  .++..+.+|||++|+|||+++|++++. ++
T Consensus       168 tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~-ll  246 (374)
T PLN03032        168 NIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGV-AL  246 (374)
T ss_pred             EecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEE-EE
Confidence            689999999999999999999996     699999985444 323222  345567899999999999999988764 45


Q ss_pred             ecC
Q psy2484          74 TQR   76 (98)
Q Consensus        74 ~r~   76 (98)
                      +|+
T Consensus       247 ~r~  249 (374)
T PLN03032        247 TRK  249 (374)
T ss_pred             EEc
Confidence            554

>KOG0628|consensus

Probab=99.78  E-value=4e-20  Score=153.93  Aligned_cols=82  Identities=16%  Similarity=0.254  Sum_probs=70.2

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCC--CCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHS--PSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP   78 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~--~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~   78 (98)
                      |.|||++.++|+|.+|..||+++|+|||||++ .|++.+|||.|  ..|||.|||+..|||||+.+-+.|++..++....
T Consensus       242 t~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~  321 (511)
T KOG0628|consen  242 TLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTK  321 (511)
T ss_pred             eecCccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCce
Confidence            78999999999999999999999999999998 57888899884  8999999999999999999998776555544434


Q ss_pred             Ccccc
Q psy2484          79 PSGYL   83 (98)
Q Consensus        79 ~~~~l   83 (98)
                      ...++
T Consensus       322 ~~~~~  326 (511)
T KOG0628|consen  322 LSRAF  326 (511)
T ss_pred             eeeee
Confidence            44433

>PRK02769 histidine decarboxylase; Provisional

Probab=99.76  E-value=6.9e-19  Score=141.03  Aligned_cols=75  Identities=17%  Similarity=0.264  Sum_probs=60.3

Q ss_pred             CCCcccccccCCChHHHHHHHHHcC---ceEEeecccchhhh-cCCC--CCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484           1 MEIGSSLNGHVDNVSLLQEICAKYN---LWLHLRGHNLSSLA-LNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         1 ~taGtt~~Ga~D~l~~i~~ic~~~~---lWlHVDga~~~al~-~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      .|+|||.+|++||+++|+++|++||   +|+||||+.++..+ +.+.  .++..+.+||+++|+|||+++|++++.++++
T Consensus       166 ~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r  245 (380)
T PRK02769        166 ANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAK  245 (380)
T ss_pred             EEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEe
Confidence            3789999999999999999999998   79999998554332 2222  3566668999999999999999888755444


Q ss_pred             c
Q psy2484          75 Q   75 (98)
Q Consensus        75 r   75 (98)
                      +
T Consensus       246 ~  246 (380)
T PRK02769        246 K  246 (380)
T ss_pred             h
Confidence            3

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.75  E-value=8.2e-19  Score=142.98  Aligned_cols=75  Identities=11%  Similarity=0.123  Sum_probs=61.5

Q ss_pred             CCCcccccccCCChHHHHHHHHHc------CceEEeecccchhh---hcCCCC--CCCCccCccccccCccccCCCCCCC
Q psy2484           1 MEIGSSLNGHVDNVSLLQEICAKY------NLWLHLRGHNLSSL---ALNSHS--PSPLQPGHSVSLPLGTWLNLPLSLP   69 (98)
Q Consensus         1 ~taGtt~~Ga~D~l~~i~~ic~~~------~lWlHVDga~~~al---~~~~~~--~~gi~~ADS~t~d~HKwL~vP~~~~   69 (98)
                      .|+|||.+|++||+++|+++|+++      |+|+||||+.++..   .+++.+  +. ++.+||+++|+|||++.|++++
T Consensus       192 ~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~-~~~~DSis~s~HK~~~~P~g~G  270 (431)
T TIGR01788       192 CILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR-LPRVKSINVSGHKYGLVYPGVG  270 (431)
T ss_pred             EEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC-CCCceEEEECchhccCCCCCcE
Confidence            378999999999999999999999      99999999855433   245553  34 8999999999999999998887


Q ss_pred             eeEEecC
Q psy2484          70 SPARTQR   76 (98)
Q Consensus        70 ~~ll~r~   76 (98)
                      +++++++
T Consensus       271 ~l~~r~~  277 (431)
T TIGR01788       271 WVIWRDE  277 (431)
T ss_pred             EEEEeCh
Confidence            5555443

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.40  E-value=1.3e-13  Score=104.50  Aligned_cols=69  Identities=20%  Similarity=0.350  Sum_probs=56.2

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchhhh-cCCC--CCCCCccCccccccCccccCCCCCCCe
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLA-LNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPS   70 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~-~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~   70 (98)
                      +.+++.+|.+||+++|+++|++||+|+|||++.+.... ....  +..+++.+||+++++||||+.|++++.
T Consensus       155 ~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~  226 (345)
T cd06450         155 TAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSA  226 (345)
T ss_pred             ecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHH
Confidence            56788999999999999999999999999998654443 2222  235667899999999999999977654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>KOG0630|consensus

Probab=99.39  E-value=1.1e-13  Score=117.87  Aligned_cols=79  Identities=27%  Similarity=0.496  Sum_probs=72.6

Q ss_pred             CCcccccccCCChHHHHHHHHHcC-ceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYN-LWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~-lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      ..|++.+|.+|.|.+|.|||++++ +|||+.|++.+++.+.+.   ..+-.|+-|||++|..-|||+| +.+.|++.|+.
T Consensus       299 ~iGasi~GqnDmi~kildi~eahakfWLHasGhaiAALt~aepnnil~HV~eqldSMal~ialWLGiP-SaPiV~LHRPl  377 (838)
T KOG0630|consen  299 DIGASICGQNDMILKILDICEAHAKFWLHASGHAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIP-SAPIVLLHRPL  377 (838)
T ss_pred             eccchhhcchHHHHHHHHHHHHhhheeEeeccchhhheeecCcccchhHHHHHHhhccchhHHHhCCC-CCceEEeeccc
Confidence            479999999999999999999998 999999999999999986   4677899999999999999999 99999999987


Q ss_pred             CCcc
Q psy2484          78 PPSG   81 (98)
Q Consensus        78 ~~~~   81 (98)
                      +.+.
T Consensus       378 eg~a  381 (838)
T KOG0630|consen  378 EGSA  381 (838)
T ss_pred             cccc
Confidence            6543

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.34  E-value=8.7e-13  Score=108.78  Aligned_cols=80  Identities=9%  Similarity=-0.005  Sum_probs=58.2

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCC-CCCc--cCccccccCccccCCCCCCCeeEEecCCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSP-SPLQ--PGHSVSLPLGTWLNLPLSLPSPARTQRVP   78 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~-~gi~--~ADS~t~d~HKwL~vP~~~~~~ll~r~~~   78 (98)
                      |.+|...|..||+++|+++|++||+|+|||++++.......... +|++  ++|++++++|||+.+|.. +++++.|+++
T Consensus       212 Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~e  290 (444)
T TIGR03531       212 TTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDEN  290 (444)
T ss_pred             cCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccccCCCeEEEeCccCCCCCCC-EEEEEECCHH
Confidence            34455566899999999999999999999998774221111112 4543  689999999999999954 6677777655


Q ss_pred             Cccc
Q psy2484          79 PSGY   82 (98)
Q Consensus        79 ~~~~   82 (98)
                      ....
T Consensus       291 l~~~  294 (444)
T TIGR03531       291 FIQE  294 (444)
T ss_pred             HHHH
Confidence            4433

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.06  E-value=2.6e-10  Score=87.30  Aligned_cols=74  Identities=15%  Similarity=0.145  Sum_probs=53.8

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhh-cCCC--CCC-CCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLA-LNSH--SPS-PLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~-~~~~--~~~-gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      .+++.+|.++|+++|+++|+++|+|+|||++.++... ..+.  .++ ....+||+++++|||+..|+.++. ++.+++
T Consensus       159 ~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~-~~~~~~  236 (371)
T PRK13520        159 AGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGG-ILFRDE  236 (371)
T ss_pred             cCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceE-EEEcCH
Confidence            4678899999999999999999999999997543321 1111  111 245689999999999988855654 454443

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.05  E-value=2.6e-10  Score=101.35  Aligned_cols=66  Identities=14%  Similarity=0.011  Sum_probs=51.4

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLP   69 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~   69 (98)
                      |.++|..+..||+++|+++|+++|+|+||||+...+++.-.  ..|...||++++|+||||++|++.+
T Consensus       647 t~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~--~pg~~GADi~~~s~HK~f~~P~G~G  712 (954)
T PRK05367        647 TYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLA--RPGDIGADVSHLNLHKTFCIPHGGG  712 (954)
T ss_pred             EcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCC--ChhhcCCCEEEecCcccCCCCcCCC
Confidence            56777734459999999999999999999998654433221  1244569999999999999998755

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.03  E-value=3.1e-10  Score=87.10  Aligned_cols=71  Identities=14%  Similarity=0.152  Sum_probs=52.1

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhh-cC----CC-CCC-CCccCccccccCccccCCCCCCCeeEE
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLA-LN----SH-SPS-PLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~-~~----~~-~~~-gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      .+++.+|.++|+++|.++|+++|+|+|||++.+...+ +.    .. .+. ....+||+++++|||+..|..++.+++
T Consensus       161 ~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~  238 (373)
T TIGR03812       161 AGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILF  238 (373)
T ss_pred             CCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEE
Confidence            4678899999999999999999999999998653321 11    00 111 123679999999999888866664443

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=98.91  E-value=2.4e-09  Score=71.87  Aligned_cols=69  Identities=12%  Similarity=0.078  Sum_probs=51.9

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeE
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPA   72 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~l   72 (98)
                      ..++.+|..+|+++|+++|+++|+|+++|++.++...-..........+|.++..+||||+.| +++.++
T Consensus       100 ~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~~~~~-~~G~l~  168 (170)
T cd01494         100 PNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGE-GGGVVI  168 (170)
T ss_pred             cCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccccCCC-ceEEEE
Confidence            446678999999999999999999999999754333322111122356999999999999997 776543

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PLN02651 cysteine desulfurase

Probab=98.83  E-value=3.6e-09  Score=82.21  Aligned_cols=69  Identities=12%  Similarity=0.065  Sum_probs=50.1

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ..+..+|.+.|+++|.++|+++|+|+|||++-++... + ..++.+ .+|.+++++|||+ -|.+++.+++.+
T Consensus       146 ~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~-~-~~~~~~-~~D~~~~s~hK~~-gp~G~g~l~v~~  214 (364)
T PLN02651        146 AVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKI-P-VDVDDL-GVDLMSISGHKIY-GPKGVGALYVRR  214 (364)
T ss_pred             CCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCc-c-cCcccC-CCCEEEechhhhC-CCCceEEEEEcC
Confidence            3456799999999999999999999999997443321 1 112222 2799999999994 575776544443

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=98.80  E-value=8.4e-09  Score=79.29  Aligned_cols=70  Identities=9%  Similarity=0.057  Sum_probs=52.5

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccc-hhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNL-SSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~-~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      ...+.+|.+.|+++|.++|+++|+|++||++-+ +..-+.   + ....+|.++++.||||+.|.+++.+++.++
T Consensus       145 ~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~---~-~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~  215 (376)
T TIGR01977       145 HASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPID---M-TELAIDMLAFTGHKGLLGPQGTGGLYIREG  215 (376)
T ss_pred             CCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCC---c-hhcCCCEEEecccccccCCCCceEEEEcCC
Confidence            456679999999999999999999999999643 332221   1 124689999999999999966654444443

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=98.79  E-value=7.4e-09  Score=84.97  Aligned_cols=61  Identities=20%  Similarity=0.069  Sum_probs=47.5

Q ss_pred             ccccC-CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCC
Q psy2484           7 LNGHV-DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLP   69 (98)
Q Consensus         7 ~~Ga~-D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~   69 (98)
                      .+|.+ +|+++|+++|+++|.|++||++...++.- .. -.|-..||+++.++||||++|++++
T Consensus       219 ~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g-~~-~~~~~GaD~~~~~~hK~l~~P~g~G  280 (481)
T PRK04366        219 TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILG-KA-RPGDMGFDVVHLNLHKTFSTPHGGG  280 (481)
T ss_pred             CccccchHHHHHHHHHHHcCCEEEEEecChhhhcc-cC-CccccCCCEEEEechhhcCCCCCCC
Confidence            57887 69999999999999999999986444221 11 1234458999999999999998764

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.78  E-value=8.8e-09  Score=91.90  Aligned_cols=64  Identities=14%  Similarity=0.104  Sum_probs=52.9

Q ss_pred             CCcccccccCCC-hHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC
Q psy2484           2 EIGSSLNGHVDN-VSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         2 taGtt~~Ga~D~-l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      |.+++ +|.++| +++|+++|+++|.|++|||+...++.....  .|-..||.+++|+||||+.|.+.
T Consensus       635 T~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~--Pg~~GaDi~~~s~HKtf~~P~G~  699 (939)
T TIGR00461       635 TYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTS--PGDLGADVCHLNLHKTFCIPHGG  699 (939)
T ss_pred             EeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCC--ccccCCCEEEecCCccCCCCCCC
Confidence            45676 799988 999999999999999999987555443332  36677999999999999999876

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=98.76  E-value=9.1e-09  Score=81.25  Aligned_cols=70  Identities=10%  Similarity=0.143  Sum_probs=51.6

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      ..++.+|.+.|+++|.++|+++|+|+|||++-+.... + ..++. ..+|.+++++||+++ |.+++.+++.++
T Consensus       150 ~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~-~-~~~~~-~~~D~~~~s~~K~~g-p~G~G~l~~~~~  219 (402)
T TIGR02006       150 HVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKI-P-INVNE-LKVDLMSISGHKIYG-PKGIGALYVRRK  219 (402)
T ss_pred             CCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCc-c-cCccc-cCCCEEEEehhhhcC-CCceEEEEEccC
Confidence            3456789999999999999999999999997433221 2 11222 358999999999887 658775555543

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=98.71  E-value=1.6e-08  Score=77.87  Aligned_cols=70  Identities=9%  Similarity=0.076  Sum_probs=50.6

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      ..++.+|.+.|+++|.++|+++|+|++||++.+.+.. + ..++ ...+|.++.+.|||++ |.+++. ++.+++
T Consensus       146 ~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~-~-~~~~-~~~~D~~~~s~~K~~g-p~g~g~-l~~~~~  215 (353)
T TIGR03235       146 HVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKI-T-VDLS-ADRIDLISCSGHKIYG-PKGIGA-LVIRKR  215 (353)
T ss_pred             cccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCc-c-cccc-ccCCCEEEeehhhcCC-CCceEE-EEEccC
Confidence            4567899999999999999999999999997333222 1 1111 1359999999999976 537654 444443

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=98.70  E-value=2e-08  Score=77.28  Aligned_cols=67  Identities=10%  Similarity=0.035  Sum_probs=49.6

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      .++.+|.++|+++|.++|++||+|||||++...... +.. ... ..+|+++++.|||++.+ +++ +++.+
T Consensus       148 ~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~-~~~-~~~-~~~d~~~~s~~K~~~~~-g~g-~~~~~  214 (373)
T cd06453         148 VSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHM-PVD-VQD-LGCDFLAFSGHKMLGPT-GIG-VLYGK  214 (373)
T ss_pred             cccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCce-eee-ccc-cCCCEEEeccccccCCC-CcE-EEEEc
Confidence            456799999999999999999999999996433222 211 111 24799999999999986 765 44444

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=98.61  E-value=5.1e-08  Score=75.95  Aligned_cols=67  Identities=9%  Similarity=0.044  Sum_probs=49.5

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      -+..+|.+.|+++|.++|+++|+|+|||++...... + .... -..+|.+++++|||++.| +++.++++
T Consensus       149 ~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~-~-~~~~-~~~~D~~~~s~~K~~gp~-G~g~l~vr  215 (382)
T TIGR03403       149 ANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKI-P-VDVQ-KAGVDFLSFSAHKFHGPK-GVGGLYIR  215 (382)
T ss_pred             ccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCC-c-cCcc-ccCCCEEEEcchhhCCCC-ceEEEEEC
Confidence            456799999999999999999999999997432211 1 1111 135899999999998866 87654443

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=98.49  E-value=1.3e-07  Score=73.38  Aligned_cols=57  Identities=16%  Similarity=0.124  Sum_probs=42.1

Q ss_pred             ccccCCCh-HHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC
Q psy2484           7 LNGHVDNV-SLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus         7 ~~Ga~D~l-~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~   67 (98)
                      .+|.++|+ ++|+++|++||+|++||++.++......   .+...+|.++.+.|||+ .|++
T Consensus       170 ~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~---~~~~~~d~~~~s~~K~~-~p~g  227 (398)
T cd00613         170 TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKP---PGEYGADIVVGNLQKTG-VPHG  227 (398)
T ss_pred             CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCC---hHHcCCCEEEeeccccC-CCCC
Confidence            46888885 9999999999999999995322111111   12335899999999999 8754

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=98.48  E-value=2.1e-07  Score=72.68  Aligned_cols=67  Identities=9%  Similarity=0.001  Sum_probs=49.2

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      ..++.+|...|+++|.++|++||+|++||++.+... .+ ..+... .+|.++.++|||++.+ +++.+++
T Consensus       167 ~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~-~~-~~~~~~-~~d~~~~s~~K~~gp~-G~g~l~~  233 (403)
T TIGR01979       167 HVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPH-MP-VDVQAL-DCDFYVFSGHKMYGPT-GIGVLYG  233 (403)
T ss_pred             cccccccccCCHHHHHHHHHHcCCEEEEEchhhcCc-cc-cCcccc-CCCEEEEecccccCCC-CceEEEE
Confidence            346778999999999999999999999999754332 11 112222 4899999999999844 7654433

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=98.43  E-value=6.2e-07  Score=72.74  Aligned_cols=70  Identities=20%  Similarity=0.152  Sum_probs=51.8

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      ..++|..-|+++|+++|+++|.+||||++-+++++-....-..+..+|-++...||||+=|.+  .++++++
T Consensus       190 ~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G--g~l~~~~  259 (452)
T PTZ00094        190 ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS--GLIFYRK  259 (452)
T ss_pred             CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc--eEEEEec
Confidence            457899999999999999999999999974444432221112344799999999999988943  4555554

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=98.39  E-value=4.6e-07  Score=69.35  Aligned_cols=67  Identities=10%  Similarity=-0.065  Sum_probs=48.8

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      ..+.+|.+.|+++|+++|+++|+|+++|++..... .+ .... -..+|-++.++||||+.|.+++.+++
T Consensus       133 ~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~-~~-~~~~-~~~~d~~~~s~~K~l~~p~g~G~l~~  199 (356)
T cd06451         133 NETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGG-EP-FRMD-EWGVDVAYTGSQKALGAPPGLGPIAF  199 (356)
T ss_pred             cCCCcccccCHHHHHHHHHhcCCEEEEeeehhccC-cc-cccc-ccCccEEEecCchhccCCCCcceeEE
Confidence            45669999999999999999999999999632211 11 1111 12468889999999999977665444

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=98.38  E-value=3.9e-07  Score=70.76  Aligned_cols=67  Identities=10%  Similarity=0.006  Sum_probs=48.7

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      -+..+|.+.|+++|+++|+++|+|+|||++...... + ..+.. ..+|.+++++||+++ |.+++.+.+.
T Consensus       145 ~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~-~-~~~~~-~~~D~~~~s~~K~~g-p~G~g~l~v~  211 (379)
T TIGR03402       145 ANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKI-P-IDLKE-MNIDMLSLSGHKLHG-PKGVGALYIR  211 (379)
T ss_pred             ccCCeeecccHHHHHHHHHHcCCEEEEECccccccc-c-cCccc-CCCCEEEEcHHHcCC-CCceEEEEEC
Confidence            356799999999999999999999999996443211 1 11221 358999999999555 6587654443

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK14012 cysteine desulfurase; Provisional

Probab=98.36  E-value=5.1e-07  Score=71.27  Aligned_cols=69  Identities=12%  Similarity=0.149  Sum_probs=50.0

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      -+..+|.+.|+++|.++|+++|+|++||++-+.... + ..+.. ..+|.+++++||+++ |.+++.+++.++
T Consensus       153 ~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~-~-~~~~~-~~~D~~~~s~~K~~g-p~g~G~l~~~~~  221 (404)
T PRK14012        153 VNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKV-P-IDLSK-LKVDLMSFSAHKIYG-PKGIGALYVRRK  221 (404)
T ss_pred             cCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCc-c-cCccc-CCCCEEEEehhhccC-CCceEEEEEecC
Confidence            345689999999999999999999999997433221 1 11111 248999999999776 547776656554

>PRK02948 cysteine desulfurase; Provisional

Probab=98.35  E-value=4.9e-07  Score=70.28  Aligned_cols=67  Identities=13%  Similarity=0.043  Sum_probs=49.0

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      ...+.+|.+.|+++|.++|+++|+|+|||++...+. .+ ..+.. ..+|.++.++||+++.+ +++.+++
T Consensus       146 ~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~-~~-~~~~~-~~~d~~~~s~~K~~gp~-G~G~l~~  212 (381)
T PRK02948        146 HANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGK-LP-IDVFE-MGIDSLSVSAHKIYGPK-GVGAVYI  212 (381)
T ss_pred             CCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccc-cc-cCccc-CCCCEEEecHHhcCCCC-cEEEEEE
Confidence            356789999999999999999999999998532221 11 11111 24899999999999865 8764443

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=98.30  E-value=8.4e-07  Score=70.06  Aligned_cols=66  Identities=8%  Similarity=0.021  Sum_probs=49.2

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc-cCccccccCccccCCCCCCCeeEEec
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ-PGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~-~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ++.+|.+.|+++|+++|++||+++|||++.+... ++   ..+.+ .+|-++...||||+.|...+ +++.+
T Consensus       168 ~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~-~~---~~~~~~g~D~~~~s~~K~l~~~~~~G-~l~~~  234 (387)
T PRK09331        168 DGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGR-MP---VDGKKLGADFIVGSGHKSMAASAPSG-VLATT  234 (387)
T ss_pred             CCCCcccccHHHHHHHHHHcCCEEEEECCcccCC-cC---CCHHHcCCCEEEeeCcccccCCCCEE-EEEEC
Confidence            4569999999999999999999999999755332 12   11222 37999999999999884554 44444

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=98.25  E-value=3.2e-07  Score=69.98  Aligned_cols=70  Identities=11%  Similarity=0.012  Sum_probs=51.1

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-CCCC-CccCccccccCccccCCCCCCCeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-SPSP-LQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~~g-i~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +.+|.+.|+++|+++|+++|++++||.+.++.+.+.+. .... ...+|-++.+.||+|+-| ..++++..+.
T Consensus       164 ~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g~-~~~~~l~~~~  235 (294)
T cd00615         164 TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPAL-TQGSMIHVKG  235 (294)
T ss_pred             CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEchhcccchH-hHHHHHHhCC
Confidence            45899999999999999999999999987654433322 2221 236899999999999766 3344544444

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=98.24  E-value=1.7e-06  Score=67.21  Aligned_cols=70  Identities=10%  Similarity=0.041  Sum_probs=49.5

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      |.-++.+|...|+++|+++|+++|.|++||++-..+.+ + ..++-+ .+|=++.+.|| |+-|.+++.+.+.+
T Consensus       146 ~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~-~-id~~~~-~~D~~~~s~~K-l~gp~G~g~l~v~~  215 (371)
T PF00266_consen  146 SHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCV-P-IDLDEL-GADFLVFSSHK-LGGPPGLGFLYVRP  215 (371)
T ss_dssp             ESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTS-S---TTTT-TESEEEEESTS-TTSSSTEEEEEEEH
T ss_pred             ecccccccEEeeeceehhhhhccCCceeEechhccccc-c-cccccc-ccceeeecccc-cCCCCchhhheehh
Confidence            34567899999999999999999999999997443332 1 212222 47999999999 66675775444443

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR01814 kynureninase kynureninase

Probab=98.19  E-value=3.2e-06  Score=66.95  Aligned_cols=68  Identities=6%  Similarity=-0.015  Sum_probs=49.4

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      -+..+|.+-|+++|+++|+++|++++||++ +.+.+-+.   ++. ..+|-++...||||+-|.+ +.+++.++
T Consensus       180 v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id---~~~-~gvD~~~~s~hK~l~g~pG-~~l~v~~~  248 (406)
T TIGR01814       180 VQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLD---LHD-WGVDFACWCTYKYLNAGPG-AGAFVHEK  248 (406)
T ss_pred             cccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccc---ccc-CCCCEEEEcCccccCCCCC-eEEEEehh
Confidence            356789999999999999999999999996 43333221   221 2479999999999976646 44444443

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=98.17  E-value=2.5e-06  Score=70.27  Aligned_cols=62  Identities=10%  Similarity=0.176  Sum_probs=47.7

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchh-hhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSS-LALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~a-l~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      -+|.+-|+++|++||+++|++||||+.=..+ +-+.-..+    .+|.+++..||.-|.- +++++++
T Consensus       153 E~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~----~vD~ls~SaHK~~Gpk-GiGaLyv  215 (386)
T COG1104         153 ETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEEL----GVDLLSFSAHKFGGPK-GIGALYV  215 (386)
T ss_pred             CeeecccHHHHHHHHHHcCCeEEEehhhhcCceecccccc----CcceEEeehhhccCCC-ceEEEEE
Confidence            4799999999999999999999999953222 22221111    2999999999999988 9986655

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=98.16  E-value=3.4e-06  Score=75.99  Aligned_cols=72  Identities=10%  Similarity=0.050  Sum_probs=56.9

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC-----CCeeEEec
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS-----LPSPARTQ   75 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-----~~~~ll~r   75 (98)
                      |.+++..|.++|+++|.++|+++|..++|||+...++.....  .+--.+|-++++.||||+.|.+     ++.+.+.+
T Consensus       673 t~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~--p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~  749 (993)
T PLN02414        673 TYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTS--PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK  749 (993)
T ss_pred             ECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCC--ccccCCCEEEecCCccCCcCcccCCCCeeeEEEch
Confidence            567899999999999999999999999999987665533322  2344599999999999999975     66554444

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=98.16  E-value=7.4e-07  Score=67.30  Aligned_cols=56  Identities=23%  Similarity=0.202  Sum_probs=40.6

Q ss_pred             cCCChHHHHHHHHHcCceEEeecccchhh-hcCCCCC-CCCccCccccccCccccCCC
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHNLSSL-ALNSHSP-SPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~~~al-~~~~~~~-~gi~~ADS~t~d~HKwL~vP   65 (98)
                      ..+++++|+++|++||+|++||++..... ....... .....+|.++.++|||++.|
T Consensus       144 ~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~  201 (338)
T cd06502         144 PLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAP  201 (338)
T ss_pred             CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCc
Confidence            46889999999999999999999643221 1111111 11246899999999999999

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=98.16  E-value=4.3e-06  Score=69.31  Aligned_cols=72  Identities=17%  Similarity=0.108  Sum_probs=52.5

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +|.+++|-.-|+++|+++|+++|.||+||++=+++++-......-++.+|-++...||||+-|.+  ++++.++
T Consensus       189 ~~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G--g~I~~~~  260 (475)
T PLN03226        189 AGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG--GMIFFRK  260 (475)
T ss_pred             EecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc--eEEEEch
Confidence            35667888889999999999999999999964343332222112245799999999999977854  4555554

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=3.2e-06  Score=69.02  Aligned_cols=70  Identities=13%  Similarity=0.160  Sum_probs=53.3

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      |.-+.++|.+-|+++|+++|+++|+|+=|||+ +...+-+.   + .--.+|=+++++||||+=|.+++. |..|+
T Consensus       169 s~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~id---v-~~l~~Df~afsgHKwl~gP~GiGv-Ly~r~  239 (405)
T COG0520         169 SHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPID---V-QELGCDFLAFSGHKWLLGPTGIGV-LYVRK  239 (405)
T ss_pred             ECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCC---c-hhcCCCEEEEcccccccCCCceEE-EEEch
Confidence            34577899999999999999999999999997 43333221   1 123489999999999999977764 44443

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=98.08  E-value=3.9e-06  Score=65.07  Aligned_cols=66  Identities=12%  Similarity=0.123  Sum_probs=48.6

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc-cCccccccCccccCCCCCCCeeEEec
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ-PGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~-~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ++.+|..+|+++|.++|+++|+|++||++..... .+ .  .+.+ .+|-++...||||+.|...+ +++.+
T Consensus       149 ~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~-~~-~--~~~~~~~d~~~~s~~K~l~~~~~~G-~l~~~  215 (361)
T cd06452         149 DGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGR-MP-V--SGKELGADFIVGSGHKSMAASAPIG-VLATT  215 (361)
T ss_pred             CCCCeeeccHHHHHHHHHHcCCeEEEECCcccCC-cC-C--CHHHcCCCEEEecCCccccCCCCeE-EEEEC
Confidence            4568999999999999999999999999865322 11 1  1111 36899999999999885454 44443

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=98.07  E-value=5.6e-06  Score=65.28  Aligned_cols=65  Identities=5%  Similarity=-0.087  Sum_probs=47.4

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      +..+|.+-|+++|.++|+++|+|++||++......  +..++ -..+|-++.+.||+++.+ +++.+++
T Consensus       174 ~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~--~~~~~-~~~~D~~~~s~~K~~gp~-G~G~l~~  238 (406)
T PRK09295        174 SNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHH--PVDVQ-ALDCDFYVFSGHKLYGPT-GIGILYV  238 (406)
T ss_pred             hhcccccCCHHHHHHHHHHcCCEEEEEcccccCcc--ccCch-hcCCCEEEeehhhccCCC-CcEEEEE
Confidence            46789999999999999999999999997432211  11122 124799999999988744 7764433

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=98.04  E-value=7e-06  Score=63.44  Aligned_cols=67  Identities=3%  Similarity=-0.093  Sum_probs=48.9

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      ..+.+|..-|+++|.++|++||+++.||+.....- .+ ..++.+ .+|-++...||||+-|.+.+.+++
T Consensus       138 ~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~-~~-~~~~~~-~~D~~~~s~~K~l~~p~G~G~l~~  204 (363)
T TIGR02326       138 CETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGG-IP-IDIAEL-HIDYLISSANKCIQGVPGFGFVIA  204 (363)
T ss_pred             ecCCccccCcHHHHHHHHHHcCCEEEEEccccccC-cc-cchhhc-CccEEEecCccccccCCcceEEEE
Confidence            46779999999999999999999999999532111 11 112222 379999999999987757754433

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=98.02  E-value=9e-06  Score=63.76  Aligned_cols=63  Identities=6%  Similarity=-0.006  Sum_probs=46.9

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCee
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSP   71 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~   71 (98)
                      ...+|.+-|+++|.++|+++|++++||++.+.... + ..+..+ .+|-++.++||+++.+ +++.+
T Consensus       170 ~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~-~-~~~~~~-~~d~~~~s~~K~~gp~-G~G~l  232 (401)
T PRK10874        170 SNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHF-P-ADVQAL-DIDFYAFSGHKLYGPT-GIGVL  232 (401)
T ss_pred             cccccCcCCHHHHHHHHHHcCCEEEEECCcccccc-c-CCchhc-CCCEEEEecccccCCC-ccEEE
Confidence            45789999999999999999999999997543221 2 112222 3899999999988855 77543

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=98.01  E-value=7.1e-06  Score=64.28  Aligned_cols=62  Identities=8%  Similarity=0.037  Sum_probs=45.9

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCe
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPS   70 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~   70 (98)
                      +..+|.+-|+++|.++|+++|+|++||++.+.... + ..+..+ .+|-+++.+||+++.+ +++.
T Consensus       167 ~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~-~-~~~~~~-~~d~~~~s~~K~~gp~-G~G~  228 (398)
T TIGR03392       167 SNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHG-P-PDVQAL-DIDFYAFSGHKLYGPT-GIGV  228 (398)
T ss_pred             cccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCC-C-CChhhc-CCCEEEEecccccCCC-ceEE
Confidence            45689999999999999999999999997543221 1 112222 3788999999988755 7653

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=97.98  E-value=8.8e-06  Score=64.81  Aligned_cols=66  Identities=15%  Similarity=0.142  Sum_probs=49.3

Q ss_pred             ccccccCCChHHHHHH--HHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           5 SSLNGHVDNVSLLQEI--CAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~i--c~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      ++.+|.+-|+++|.++  |+++|+|+.||+....+. .+ ..++. -.+|-++...||||+.|.+++.+.+
T Consensus       147 ~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~-~~-id~~~-~~~D~~~~s~~K~l~~P~G~G~l~~  214 (401)
T PLN02409        147 ETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGA-LD-FRMDE-WGVDVALTGSQKALSLPTGLGIVCA  214 (401)
T ss_pred             cccccccCCHHHHHHHHhhhccCcEEEEEcccccCC-cc-ccccc-cCccEEEEcCccccCcCCCcceeEE
Confidence            5679999999999999  999999999999643211 11 11111 1478999999999999867765443

>PLN02721 threonine aldolase

Probab=97.98  E-value=4.2e-06  Score=63.54  Aligned_cols=55  Identities=20%  Similarity=0.251  Sum_probs=39.2

Q ss_pred             CChHHHHHHHHHcCceEEeecccch-hhhcCCCC-CCCCccCccccccCccccCCCC
Q psy2484          12 DNVSLLQEICAKYNLWLHLRGHNLS-SLALNSHS-PSPLQPGHSVSLPLGTWLNLPL   66 (98)
Q Consensus        12 D~l~~i~~ic~~~~lWlHVDga~~~-al~~~~~~-~~gi~~ADS~t~d~HKwL~vP~   66 (98)
                      +++++|+++|++||+|++||++... +....... ..-.+.+|++++..||||+.|.
T Consensus       158 ~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~  214 (353)
T PLN02721        158 EYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPV  214 (353)
T ss_pred             HHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCce
Confidence            3489999999999999999996321 11111121 1224578999999999999883

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=97.98  E-value=1.2e-05  Score=63.86  Aligned_cols=65  Identities=6%  Similarity=-0.099  Sum_probs=46.7

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      +..+|.+-|+++|.++|+++|+|++||++..... .+ ..++.. .+|-++.+.||+++.+ +++.+++
T Consensus       183 ~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~-~~-~~~~~~-~~d~~~~s~~K~~gp~-G~G~l~~  247 (424)
T PLN02855        183 SNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPH-MP-VDVQTL-GADFLVASSHKMCGPT-GIGFLWG  247 (424)
T ss_pred             cccccccCCHHHHHHHHHHcCCEEEEEhhhhcCC-cC-CCchhc-CCCEEEeecccccCCC-ccEEEEE
Confidence            4568999999999999999999999999753221 11 112211 3699999999987744 7654333

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=97.97  E-value=7.1e-06  Score=63.84  Aligned_cols=65  Identities=5%  Similarity=-0.041  Sum_probs=46.1

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      -+..+|.+.|+++|.++|++||+|++||++-.... .+ ..+. -..+|-++...|||++.+  .+.+++
T Consensus       165 ~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~-~~-~~~~-~~~~d~~~~s~~K~~g~~--~G~l~~  229 (397)
T TIGR01976       165 ASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPH-GL-IDVQ-ATGADFLTCSAYKFFGPH--MGILWG  229 (397)
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccc-cC-CCHH-HcCCCEEEEechhhcCCc--eEEEEE
Confidence            45679999999999999999999999999632111 11 1111 124789999999999855  444333

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>KOG1549|consensus

Probab=97.93  E-value=1.3e-05  Score=66.83  Aligned_cols=66  Identities=12%  Similarity=0.124  Sum_probs=47.6

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ...|..-|++||..+|+++|+-+|+|++=+-..+-  ..++-+ .+|=++++.|||+|-| ++++..++|
T Consensus       192 n~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~--vDV~el-n~D~~s~s~HK~ygp~-~iGaLYvr~  257 (428)
T KOG1549|consen  192 NEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIP--VDVQEL-NADFLSISAHKIYGPP-GIGALYVRR  257 (428)
T ss_pred             cCccccccHHHHHHHhCcCCcEEEeehhhhcCCcc--ccHHHc-CchheeeecccccCCC-cceEEEEcc
Confidence            34788999999999999999999999963222211  111111 3799999999999999 765444443

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=97.89  E-value=1.4e-05  Score=60.37  Aligned_cols=67  Identities=7%  Similarity=0.009  Sum_probs=46.5

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      .+.+|...|+++|.++|++||+|++||+..... ..+ ..+... ..|.+...+||||+-|.+++ +++.+
T Consensus       135 ~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g-~~~-~~~~~~-~~d~~~~s~~K~l~~~~G~g-~~~~~  201 (355)
T TIGR03301       135 ETTTGILNPLEAIAKVARSHGAVLIVDAMSSFG-AIP-IDIEEL-DVDALIASANKCLEGVPGFG-FVIAR  201 (355)
T ss_pred             CCcccchhHHHHHHHHHHHcCCEEEEEeccccC-Ccc-cchhhc-CccEEEecCCcccccCCcee-EEEEC
Confidence            356799999999999999999999999842211 111 112211 47899999999986553775 44433

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=97.87  E-value=2.1e-06  Score=67.21  Aligned_cols=65  Identities=18%  Similarity=0.154  Sum_probs=44.5

Q ss_pred             CCChHHHHHHHHHcCceEEeecccchhhh--cCCCCCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGHNLSSLA--LNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga~~~al~--~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      .+.|++|+++|++||+.+|+||+=++-.+  +....-+-.+.+|++++.+.|-++.|  .+++++.+++
T Consensus       144 ~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~--~Gavl~~~~~  210 (290)
T PF01212_consen  144 LEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAP--GGAVLAGNKE  210 (290)
T ss_dssp             HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SS--SEEEEEESHH
T ss_pred             HHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccc--cceEEEechH
Confidence            47889999999999999999997322111  11111123377999999999999999  3566666543

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=97.86  E-value=4.1e-05  Score=61.80  Aligned_cols=70  Identities=19%  Similarity=0.130  Sum_probs=50.1

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +++++|..=|+++|.++|++||++|+||++ +.+..... .....+..+|-++...||||+-|.  +.+++.++
T Consensus       175 ~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g-~~~~~~~~~Di~~~s~~K~l~g~~--GG~v~~~~  245 (416)
T PRK13034        175 GFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAG-EHPNPFPHAHVVTTTTHKTLRGPR--GGMILTND  245 (416)
T ss_pred             CCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccC-CCCCCCCCceEEEEeCcccCCCCC--CeEEEECc
Confidence            345677777999999999999999999996 33332222 222234569999999999998783  44555544

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=97.86  E-value=2.2e-05  Score=59.42  Aligned_cols=60  Identities=13%  Similarity=0.109  Sum_probs=44.8

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CC-CCccCccccccCccccCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PS-PLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~-gi~~ADS~t~d~HKwL~vP   65 (98)
                      ..+|...|+++|+++|+++|+++++|++.+....-+...    .. ....+|.++...||+++.+
T Consensus       143 ~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  207 (349)
T cd06454         143 SMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAV  207 (349)
T ss_pred             cCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhccc
Confidence            468999999999999999999999999754322211111    11 2346788889999999987

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=97.83  E-value=4.4e-05  Score=59.65  Aligned_cols=70  Identities=17%  Similarity=0.155  Sum_probs=46.8

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .+++|...|+++|+++|++||+|+++|++....+........-++.+|.++..+||||.-| .. +.++.++
T Consensus       169 ~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~-~g-g~i~~~~  238 (402)
T cd00378         169 ASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGP-RG-GLILTRK  238 (402)
T ss_pred             CcccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCC-Cc-eEEEecc
Confidence            3456777899999999999999999999743333322211111225688899999999445 33 3445544

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=97.82  E-value=4.2e-05  Score=58.10  Aligned_cols=68  Identities=10%  Similarity=0.036  Sum_probs=44.2

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .+|...|+++|.++|+++|+++.+|++-.................+.+.+..+||++.+  .+.+++.++
T Consensus       115 ~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~~~~~--~gg~~~~~~  182 (352)
T cd00616         115 LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKNLTTG--EGGAVVTND  182 (352)
T ss_pred             CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCCCCCccc--CceEEEECC
Confidence            57889999999999999999999999643222221111211223445555677999666  345566654

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>cd00609 AAT_like Aspartate aminotransferase family

Probab=97.81  E-value=5.3e-05  Score=56.33  Aligned_cols=62  Identities=13%  Similarity=0.016  Sum_probs=42.4

Q ss_pred             cccccccCCChHHHH---HHHHHcCceEEeecccchhhhcCCCC----CCCCccCccccccCccccCCC
Q psy2484           4 GSSLNGHVDNVSLLQ---EICAKYNLWLHLRGHNLSSLALNSHS----PSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~---~ic~~~~lWlHVDga~~~al~~~~~~----~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      .+..+|.+.|++++.   ++|+++|+|++||++.++........    ..+....|-+....||+++.+
T Consensus       141 ~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~  209 (350)
T cd00609         141 PNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLP  209 (350)
T ss_pred             CCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCc
Confidence            566789998866665   89999999999999754333222221    122333566677899999976

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=97.74  E-value=3e-05  Score=64.97  Aligned_cols=65  Identities=5%  Similarity=0.005  Sum_probs=51.3

Q ss_pred             CChHHHHHHHHHcCceEEeecc--cchhhhcCCC--CCCC----------CccCccccccCccccCCCCCCCeeEEecCC
Q psy2484          12 DNVSLLQEICAKYNLWLHLRGH--NLSSLALNSH--SPSP----------LQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus        12 D~l~~i~~ic~~~~lWlHVDga--~~~al~~~~~--~~~g----------i~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      +++++|+++|++||+.+|.||+  .+.+.++.++  ...+          .+.||+++...||-.++|  .++++..+++
T Consensus       191 ~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~--~GG~l~~~d~  268 (450)
T TIGR02618       191 ANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVN--IGGFLCMNDD  268 (450)
T ss_pred             HHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCC--CceEEEeCCH
Confidence            7899999999999999999996  4456665433  1222          456999999999999999  4778887775


Q ss_pred             C
Q psy2484          78 P   78 (98)
Q Consensus        78 ~   78 (98)
                      +
T Consensus       269 ~  269 (450)
T TIGR02618       269 E  269 (450)
T ss_pred             H
Confidence            3

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>KOG1383|consensus

Probab=97.72  E-value=5.3e-05  Score=64.07  Aligned_cols=77  Identities=13%  Similarity=0.082  Sum_probs=60.1

Q ss_pred             CCCcccccccCCChHHHHHHHHH-cCceEEeecccchhhh----cCCCCCC-CCccCccccccCccccCCCCCCCeeEEe
Q psy2484           1 MEIGSSLNGHVDNVSLLQEICAK-YNLWLHLRGHNLSSLA----LNSHSPS-PLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         1 ~taGtt~~Ga~D~l~~i~~ic~~-~~lWlHVDga~~~al~----~~~~~~~-gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      |.+|++-+|.+||+++|.++..+ |++=+|||++-|+..+    ..+.+++ +.-..-|++.|.||.=.+|-+. ++.++
T Consensus       224 ~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~-~~vl~  302 (491)
T KOG1383|consen  224 GSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGS-SWVLY  302 (491)
T ss_pred             EEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeeccceeeeeecCc-EEEEE
Confidence            57899999999999999999998 9999999998554443    1222322 5666789999999999999454 56777


Q ss_pred             cCCC
Q psy2484          75 QRVP   78 (98)
Q Consensus        75 r~~~   78 (98)
                      |.++
T Consensus       303 r~k~  306 (491)
T KOG1383|consen  303 RNKE  306 (491)
T ss_pred             cccc
Confidence            7653

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=97.71  E-value=6e-05  Score=58.23  Aligned_cols=66  Identities=5%  Similarity=-0.034  Sum_probs=47.4

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      .+.+|...|+++|.++|+++|+++.||++..... .+ ..+... ..|-++...||||+-|.+++.+++
T Consensus       141 ~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~-~~-~~~~~~-~~d~~v~s~~K~l~g~~G~G~l~~  206 (368)
T PRK13479        141 ETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGA-IP-IDIAEL-GIDALISSANKCIEGVPGFGFVIA  206 (368)
T ss_pred             cCccccccCHHHHHHHHHHcCCEEEEEcccccCC-cc-cccccc-CceEEEecCccccccCCCceEEEE
Confidence            4578999999999999999999999998532211 11 122211 378999999999976658754444

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=97.67  E-value=3.4e-05  Score=61.67  Aligned_cols=60  Identities=13%  Similarity=0.006  Sum_probs=43.6

Q ss_pred             cccccCCChHHHHHHHHHcCceEEe--ecccchhhhcCCCCCCCCccCccccccCccc-----cCCCCCCCee
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHL--RGHNLSSLALNSHSPSPLQPGHSVSLPLGTW-----LNLPLSLPSP   71 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHV--Dga~~~al~~~~~~~~gi~~ADS~t~d~HKw-----L~vP~~~~~~   71 (98)
                      +.+|.+||+++|+++|+++|+|++|  |+...+.+..     .+--.+|-++.+.|||     ++-| +++.+
T Consensus       214 n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~~~g~~~~-----~~~~~~D~~~~s~~k~~~~~~~~Gp-g~G~l  280 (447)
T PRK00451        214 NFFGVIEDLEEIAEIAHAGGALFIVGVDPVSLGLLKP-----PGEYGADIVVGEGQPLGIPLSFGGP-YLGFF  280 (447)
T ss_pred             CCCCeeCCHHHHHHHHHHCCCEEEEEcChHHhccCCC-----cccCCCCEEEECCCcCCCCCCCCCC-CchHH
Confidence            5689999999999999999999999  5443222211     2445789999999997     4445 55443

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=97.66  E-value=0.00013  Score=57.61  Aligned_cols=69  Identities=17%  Similarity=0.172  Sum_probs=47.5

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +++|..-|+++|+++|++||++++||++.............-++.+|-++..+||||.-| . +..++.++
T Consensus       174 ~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~-~-gg~i~~~~  242 (416)
T PRK00011        174 SAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGP-R-GGLILTND  242 (416)
T ss_pred             CcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCC-C-ceEEEeCC
Confidence            567777799999999999999999999744333322111111226799999999999656 3 34556544

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=97.64  E-value=6.8e-05  Score=62.98  Aligned_cols=68  Identities=6%  Similarity=0.030  Sum_probs=51.8

Q ss_pred             CCChHHHHHHHHHcCceEEeecc--cchhhhcCCC--CCCC----------CccCccccccCccccCCCCCCCeeEEecC
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGH--NLSSLALNSH--SPSP----------LQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga--~~~al~~~~~--~~~g----------i~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .+++++|.++|++||+.+|.||+  .+.+.++.++  ...|          .+.+|.+++.+||-+.+|  .+.+++.++
T Consensus       197 ~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~--~GG~i~t~D  274 (460)
T PRK13237        197 MANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVN--IGGFLAMND  274 (460)
T ss_pred             HHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCC--CceEEEECC
Confidence            46899999999999999999995  5555455332  1222          357999999999999999  367778887


Q ss_pred             CCCc
Q psy2484          77 VPPS   80 (98)
Q Consensus        77 ~~~~   80 (98)
                      ++..
T Consensus       275 ~eL~  278 (460)
T PRK13237        275 EELF  278 (460)
T ss_pred             HHHH
Confidence            6443

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=97.61  E-value=1.9e-05  Score=62.52  Aligned_cols=66  Identities=9%  Similarity=-0.108  Sum_probs=50.1

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      |--+|.+|..-|+++|++  +++|+++-||+. ..+..-+.      ++..|=+....||||+-|.+++.+.+.+
T Consensus       143 ~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pid------v~~iD~~~~s~~K~l~~P~G~g~l~v~~  209 (378)
T PRK03080        143 TWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLD------WSKLDVYTFSWQKVLGGEGGHGMAILSP  209 (378)
T ss_pred             EecCCccceeccchhhcc--ccCCCeEEEecccccccCCCC------HHHCcEEEEehhhhCCCCCceEEEEECH
Confidence            345789999999999999  889999999996 33332221      2236999999999999986876554443

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=97.59  E-value=7.9e-05  Score=57.93  Aligned_cols=60  Identities=12%  Similarity=0.151  Sum_probs=43.3

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC-ccCccccccCccccCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL-QPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi-~~ADS~t~d~HKwL~vP   65 (98)
                      ..+|.+.|+++|+++|++||+||++|.+......-...+    ..++ +..|-++..+||||+-+
T Consensus       181 ~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~  245 (393)
T TIGR01822       181 SMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGA  245 (393)
T ss_pred             cCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCC
Confidence            457999999999999999999999999853322211111    1233 25788888999998754

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=97.55  E-value=0.0001  Score=58.37  Aligned_cols=62  Identities=11%  Similarity=-0.014  Sum_probs=45.9

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      .+|.+=|+++|+++|++||+++++|++.+.-+  ... . . ..+|.++...||||+-| .. .+++.+
T Consensus       161 ~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~--~~~-~-~-~g~D~~~~S~~K~l~gp-~~-G~l~~~  222 (363)
T TIGR01437       161 VQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL--QKY-Y-R-LGADLVIYSGAKAIEGP-TS-GLVLGK  222 (363)
T ss_pred             CcCCcCCHHHHHHHHHHcCCeEEEECCCCCch--HHH-H-H-cCCCEEEEeCCcccCCC-ce-EEEEEc
Confidence            46778889999999999999999999865211  100 0 1 13799999999999999 44 455544

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PLN02271 serine hydroxymethyltransferase

Probab=97.52  E-value=0.00023  Score=61.47  Aligned_cols=65  Identities=14%  Similarity=0.046  Sum_probs=47.8

Q ss_pred             cCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      -.-|+++|++||+++|+.|.||++=.++++.....-.-+..||-++...||||.=|-+ + ++++|+
T Consensus       311 r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G-~I~~r~  375 (586)
T PLN02271        311 REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-G-IIFYRK  375 (586)
T ss_pred             CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-e-EEEecc
Confidence            4557999999999999999999974444443322112355699999999999999954 4 555554

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=97.51  E-value=0.00016  Score=56.66  Aligned_cols=58  Identities=7%  Similarity=0.031  Sum_probs=44.0

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      +..+|.+.|+++|.++|++||.|+.||.+.+.. .++.. ... ...|-++..+|||++.+
T Consensus       156 ~~~~G~~~~l~~i~~la~~~~~~livDea~~~g-~~~~~-~~~-~~~di~v~s~sK~~~~~  213 (370)
T TIGR02539       156 DGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVG-RMPVS-AKE-IGADFIVGSGHKSMAAS  213 (370)
T ss_pred             CCCCccccCHHHHHHHHHHcCCeEEEECccccC-CcCCC-HHH-cCCCEEEeeCcccccCC
Confidence            346799999999999999999999999976543 12211 111 13788899999999965

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=97.51  E-value=0.00012  Score=61.97  Aligned_cols=71  Identities=17%  Similarity=0.134  Sum_probs=50.5

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-C--CCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S--PSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~--~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      |.++.|..-|+++|++||++||.+|.||.+=+++++--.. .  ......+|-++...||||+=|.  +.+++.++
T Consensus       227 g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~--GG~I~~~~  300 (493)
T PRK13580        227 GYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPR--GGLVLAKK  300 (493)
T ss_pred             CccccCCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCCC--eEEEEecH
Confidence            5556677889999999999999999999963333322111 1  2345689999999999996683  34555443

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=97.48  E-value=0.00012  Score=61.81  Aligned_cols=65  Identities=11%  Similarity=0.145  Sum_probs=49.7

Q ss_pred             CCChHHHHHHHHHcCceEEeecccch--hhhcCCC-------CCC-----CCccCccccccCccccCCCCCCCeeEEecC
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGHNLS--SLALNSH-------SPS-----PLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga~~~--al~~~~~-------~~~-----gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .+++++++++|++||+=+|+||+=.+  |.++.++       ..+     -.+.+||+++.+-|-|++|  .++++.-++
T Consensus       203 lenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgAp--vGg~Lag~d  280 (467)
T TIGR02617       203 LANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVP--MGGLLCFKD  280 (467)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCc--ccceEEecc
Confidence            68899999999999999999997333  3333222       111     1378999999999999999  567888777


Q ss_pred             C
Q psy2484          77 V   77 (98)
Q Consensus        77 ~   77 (98)
                      +
T Consensus       281 ~  281 (467)
T TIGR02617       281 D  281 (467)
T ss_pred             h
Confidence            6

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>KOG1368|consensus

Probab=97.48  E-value=3e-05  Score=63.42  Aligned_cols=61  Identities=20%  Similarity=0.191  Sum_probs=46.3

Q ss_pred             CCChHHHHHHHHHcCceEEeecc--cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGH--NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga--~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      ++-+++|.++|+++|+-||.||+  +-++.++-=.--+-.+.+||+.+=+.|-|+.|  ++++++
T Consensus       174 le~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAP--VGSViV  236 (384)
T KOG1368|consen  174 LEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAP--VGSVIV  236 (384)
T ss_pred             HHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCC--cccEEE
Confidence            45566788899999999999997  44444443222234578999999999999999  577776

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.46  E-value=0.00015  Score=65.50  Aligned_cols=65  Identities=12%  Similarity=0.054  Sum_probs=48.4

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCee
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSP   71 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~   71 (98)
                      ++..+-.+|+++|+++|+++|..++|||+...++..-+  ..|--.||-++.++||||+.|.+.+..
T Consensus       651 nt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~--~Pg~~GADi~~~s~HKtf~~P~G~GGP  715 (954)
T PRK12566        651 STHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLA--RPADIGADVSHMNLHKTFCIPHGGGGP  715 (954)
T ss_pred             CcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCC--ChhhcCCCEEEecCCcccCcCccCCCC
Confidence            34444568899999999999999999998643333211  124566999999999999988766543

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=97.43  E-value=0.00028  Score=54.05  Aligned_cols=60  Identities=15%  Similarity=0.199  Sum_probs=40.9

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCCc-cCc-cccccCccccCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPLQ-PGH-SVSLPLGTWLNLP   65 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi~-~AD-S~t~d~HKwL~vP   65 (98)
                      +.+|..+|+++|+++|++||+|+++|.+.+....-...    ...+++ ..| -+....+||++.+
T Consensus       179 ~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~  244 (385)
T PRK05958        179 SMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSS  244 (385)
T ss_pred             cCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccC
Confidence            35788999999999999999999999976433221111    011232 234 2357789999987

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=97.41  E-value=0.00027  Score=55.42  Aligned_cols=68  Identities=6%  Similarity=0.067  Sum_probs=48.1

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCc--cccCCCCCCCeeEEecC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLG--TWLNLPLSLPSPARTQR   76 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~H--KwL~vP~~~~~~ll~r~   76 (98)
                      .+|..-|+++|+++|++||+|+-+|++-..........+...+.+|-.++..|  ||++.+ . +.+++.++
T Consensus       130 ~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~-~-GG~v~~~~  199 (380)
T TIGR03588       130 FAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTA-E-GGAVTTND  199 (380)
T ss_pred             CCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEEecCCCCccccc-C-ceEEEECC
Confidence            36888899999999999999999999633222233222322246799999988  999987 3 45556554

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PLN02724 Molybdenum cofactor sulfurase

Probab=97.36  E-value=0.00024  Score=62.13  Aligned_cols=69  Identities=13%  Similarity=0.095  Sum_probs=47.9

Q ss_pred             CcccccccCCChHHHHHHHHHc-------C-ceEEeecccc-hhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKY-------N-LWLHLRGHNL-SSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~-------~-lWlHVDga~~-~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      +-+..+|.+-|+++|.++++..       | ++++|||+-. +..-+.   ++.+ .+|-+++++|||++-|.+++++++
T Consensus       200 ~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piD---v~~~-~~Dfl~~S~HK~~GgP~G~G~L~v  275 (805)
T PLN02724        200 SECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPD---LSRY-PADFVVVSFYKIFGYPTGLGALLV  275 (805)
T ss_pred             ccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCC---hhhc-CCCEEEEecceeccCCCCceEEEE
Confidence            4456899999999887766643       3 5699999633 222221   2211 489999999999999978875555


Q ss_pred             ec
Q psy2484          74 TQ   75 (98)
Q Consensus        74 ~r   75 (98)
                      .+
T Consensus       276 r~  277 (805)
T PLN02724        276 RR  277 (805)
T ss_pred             eh
Confidence            44

>PRK07179 hypothetical protein; Provisional

Probab=97.30  E-value=0.00046  Score=54.61  Aligned_cols=64  Identities=9%  Similarity=0.020  Sum_probs=45.1

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC-ccCccccccCccccCCCCCCCeeE
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL-QPGHSVSLPLGTWLNLPLSLPSPA   72 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi-~~ADS~t~d~HKwL~vP~~~~~~l   72 (98)
                      .+|.+-|+++|+++|++||+||+||.+......-+..+    .-++ +..|-++...||+++.+  .+.++
T Consensus       193 ~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~~--~G~l~  261 (407)
T PRK07179        193 TTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAGR--AGIIT  261 (407)
T ss_pred             CCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhcc--CeEEE
Confidence            47899999999999999999999999643222111111    1133 35789999999999965  44433

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=97.20  E-value=0.00053  Score=54.73  Aligned_cols=68  Identities=10%  Similarity=0.032  Sum_probs=49.4

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC-CeeEEecCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL-PSPARTQRV   77 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~-~~~ll~r~~   77 (98)
                      ..+|.+-|+++|+++|+++|+++-||++.++.....+...    .+|-+...+||||+-|-+. +.+++.+++
T Consensus       142 nptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l~~----g~Di~v~S~tK~l~G~~~~~~G~v~~~~~  210 (378)
T TIGR01329       142 NPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPLEL----GADIVYHSATKFLAGHSDVMAGVLAVKGE  210 (378)
T ss_pred             CCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhhc----CCcEEEEecceeccCCccceeEEEEeCcH
Confidence            4578888999999999999999999997644432221111    5799999999999987331 455555554

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK06767 methionine gamma-lyase; Provisional

Probab=97.18  E-value=0.00078  Score=53.75  Aligned_cols=65  Identities=5%  Similarity=-0.072  Sum_probs=47.9

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR   76 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~   76 (98)
                      .+|.+-|+++|.++|+++|+|++||.+....... .. +  ...+|.++...+|+++.+ +.  +.+++.++
T Consensus       158 ptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~-~p-l--~~g~Div~~S~sK~l~g~-g~~~gG~v~~~~  224 (386)
T PRK06767        158 PTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQ-RP-L--ELGCDAVVHSATKYIGGH-GDVVAGVTICKT  224 (386)
T ss_pred             CCceecCHHHHHHHHHHcCCEEEEECCCcccccC-Cc-h--hcCCcEEEecCcceecCC-CCceeEEEEeCh
Confidence            4788889999999999999999999986432211 11 1  135799999999999998 64  34555444

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=97.13  E-value=0.0002  Score=58.38  Aligned_cols=62  Identities=19%  Similarity=0.158  Sum_probs=44.0

Q ss_pred             CCChHHHHHHHHHcCceEEeecc-cchhhhcCCC-CCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH-SPSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~-~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      .|.|++|+++|++||+=||+||+ ...+++.... ...-..-.||+.+=+-|-++.|  ..++++.
T Consensus       149 l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~--~gAiv~g  212 (342)
T COG2008         149 LDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAP--VGAIVFG  212 (342)
T ss_pred             HHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcce--eeeEEEc
Confidence            46777888899999999999997 2222222222 2233456899999999999999  3456554

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=97.09  E-value=0.00096  Score=52.94  Aligned_cols=67  Identities=7%  Similarity=-0.012  Sum_probs=46.0

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .+|..-|+++|+++|++||+++.+|++...........+... ..+.+.+..+|+|..+  -+.+++.++
T Consensus       130 ~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~-g~~~~Sf~~~K~l~~g--~GG~v~~~~  196 (379)
T PRK11658        130 YAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGAR-GTAIFSFHAIKNITCA--EGGLVVTDD  196 (379)
T ss_pred             CCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCC-CCEEEeCCCCCcCccc--CceEEEECC
Confidence            468888999999999999999999997543322222122212 2367888899998765  355556554

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=97.05  E-value=0.0009  Score=53.86  Aligned_cols=65  Identities=9%  Similarity=-0.010  Sum_probs=47.0

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR   76 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~   76 (98)
                      .+|.+=|+++|.++|+++|+++.||.+........ ..-   ..+|-++..++||++.+ +.  +.+++.++
T Consensus       162 ptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~-~~~---~gaDivv~S~sK~l~g~-g~~~GG~vv~~~  228 (398)
T PRK07504        162 PTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQK-PLE---LGAHIVVYSATKHIDGQ-GRCLGGVVLSDK  228 (398)
T ss_pred             CCcEecCHHHHHHHHHHcCCEEEEECCccccccCC-chh---hCCCEEEeeccccccCC-ccceEEEEEeCc
Confidence            46777789999999999999999999754332211 111   13799999999999987 63  44555444

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=97.03  E-value=0.0012  Score=52.00  Aligned_cols=66  Identities=8%  Similarity=-0.033  Sum_probs=48.3

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~   76 (98)
                      ..+|.+-|+++|+++|++||++++||.+.+.......  +.  ..+|-+....+|+++-+ +.  +.+++.++
T Consensus       136 np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~~--~~--~g~Divv~S~tK~l~g~-~~~~gG~v~~~~  203 (369)
T cd00614         136 NPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRP--LE--LGADIVVHSATKYIGGH-SDVIAGVVVGSG  203 (369)
T ss_pred             CCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCCh--hh--hCCcEEEeccceeccCC-CCceEEEEEeCc
Confidence            4578899999999999999999999998654433111  11  14788999999999976 42  34455544

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=97.00  E-value=0.0011  Score=53.26  Aligned_cols=65  Identities=9%  Similarity=-0.008  Sum_probs=46.7

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEec
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQ   75 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r   75 (98)
                      ..+|.+-|+++|+++|+++|+|+.||..........+. .   ..+|-++..++||++.+ +.  +.+++.+
T Consensus       157 NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl-~---~g~Divv~S~sK~~~g~-g~~~GG~vv~~  223 (390)
T PRK08133        157 NPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPL-K---LGADVVIHSATKYLDGQ-GRVLGGAVVGS  223 (390)
T ss_pred             CCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCch-h---hCCcEEEeecceeecCC-cceEeEEEEcC
Confidence            35788899999999999999999999975433221111 1   13688899999999988 53  3444443

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=97.00  E-value=0.00079  Score=55.62  Aligned_cols=65  Identities=9%  Similarity=0.063  Sum_probs=46.4

Q ss_pred             CCChHHHHHHHHHcCceEEeecc--cchhhhcCC----C---CCCC-----CccCccccccCccccCCCCCCCeeEEecC
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGH--NLSSLALNS----H---SPSP-----LQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga--~~~al~~~~----~---~~~g-----i~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .+++++|+++|++||+|++.|++  +..+....+    .   .+..     .+.+|++++..+|++..|.  +.+++.++
T Consensus       197 ~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~--GG~i~~~d  274 (460)
T PRK13238        197 MANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNI--GGLLCFRD  274 (460)
T ss_pred             HHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcc--eeEEEcCh
Confidence            56789999999999999999994  333332221    1   1111     2569999999999999994  56777665


Q ss_pred             C
Q psy2484          77 V   77 (98)
Q Consensus        77 ~   77 (98)
                      +
T Consensus       275 ~  275 (460)
T PRK13238        275 E  275 (460)
T ss_pred             H
Confidence            4

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=96.93  E-value=0.0014  Score=51.53  Aligned_cols=62  Identities=11%  Similarity=0.080  Sum_probs=40.9

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCCccCccccccCccccCCCCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      ..+|.+-|+++|+++|+++|++||||++.+.+..-...+    ..|.+..+-+...++|.++.+ +.
T Consensus       154 s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~-G~  219 (370)
T PRK05937        154 SFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSM-GA  219 (370)
T ss_pred             CCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcC-ce
Confidence            357899999999999999999999999754332222111    112222223345677999876 54

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=96.89  E-value=0.0013  Score=54.36  Aligned_cols=65  Identities=8%  Similarity=0.029  Sum_probs=46.8

Q ss_pred             CCChHHHHHHHHHcCceEEeecc--cchhhhcC----CCCCC--------CCccCccccccCccccCCCCCCCeeEEecC
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGH--NLSSLALN----SHSPS--------PLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga--~~~al~~~----~~~~~--------gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .++|++|+++|++||+|++.|++  ...+....    .....        -.+.+|++++..+|-+.+|.  +.+++.++
T Consensus       172 ~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~--GG~i~~~d  249 (431)
T cd00617         172 MANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNI--GGFLALRD  249 (431)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCcc--ceEEEeCc
Confidence            45788999999999999999997  33333321    11111        12469999999999999993  66667776


Q ss_pred             C
Q psy2484          77 V   77 (98)
Q Consensus        77 ~   77 (98)
                      +
T Consensus       250 ~  250 (431)
T cd00617         250 D  250 (431)
T ss_pred             H
Confidence            4

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=96.88  E-value=0.002  Score=51.77  Aligned_cols=63  Identities=2%  Similarity=-0.157  Sum_probs=47.0

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEe
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPART   74 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~   74 (98)
                      .+|.+=|+++|.++|+++|+|+.||.+.+.... ... .  -..+|-++..++|+++.+ +.  +.+++.
T Consensus       156 p~G~v~dl~~I~~la~~~gi~livD~a~a~~~~-~~~-~--~~g~Divv~S~sK~lgg~-g~~~gG~v~~  220 (391)
T TIGR01328       156 PTMKLIDMERVCRDAHSQGVKVIVDNTFATPML-TNP-V--ALGVDVVVHSATKYIGGH-GDVVAGLICG  220 (391)
T ss_pred             CCCcccCHHHHHHHHHHcCCEEEEECCCchhcc-CCc-h--hcCCCEEEccccccccCC-CCceEEEEEc
Confidence            468888899999999999999999998654332 111 1  135888999999999998 64  344443

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=96.86  E-value=0.0016  Score=50.27  Aligned_cols=57  Identities=11%  Similarity=0.199  Sum_probs=40.6

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCC-ccCccccccCccccC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPL-QPGHSVSLPLGTWLN   63 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi-~~ADS~t~d~HKwL~   63 (98)
                      .+|..+++++|+++|++||+|+.+|..+.....-...    ...++ +..|-++..++|+++
T Consensus       186 ~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~  247 (397)
T PRK06939        186 MDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALG  247 (397)
T ss_pred             CCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhC
Confidence            4688899999999999999999999986422211111    11233 346777789999994

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.85  E-value=0.0015  Score=53.59  Aligned_cols=57  Identities=11%  Similarity=-0.012  Sum_probs=44.8

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~   67 (98)
                      ..+|.+=|+++|+++|+++|+++.||++........+  +  --.||-++...|||++=+ +
T Consensus       160 np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~p--l--~~GaD~vv~S~tK~l~g~-g  216 (433)
T PRK08134        160 NPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRP--F--EHGADLVYHSATKFLGGH-G  216 (433)
T ss_pred             cccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCc--h--hcCCCEEEeccccccCCC-C
Confidence            3577788999999999999999999997544433211  1  135899999999999987 5

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=96.81  E-value=0.0021  Score=51.20  Aligned_cols=64  Identities=8%  Similarity=0.004  Sum_probs=46.6

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEec
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQ   75 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r   75 (98)
                      .+|.+-|+++|+++|+++|+++.||.+........+  ++  ..+|-++..++||++-+ +.  +.+++.+
T Consensus       151 p~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~p--l~--~g~Divv~S~sK~l~g~-g~~~gG~vv~~  216 (380)
T TIGR01325       151 PLGELVDIAALAELAHAIGALLVVDNVFATPVLQQP--LK--LGADVVVYSATKHIDGQ-GRVMGGVIAGS  216 (380)
T ss_pred             CCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc--hh--hCCCEEEeeccceecCC-CCeEEEEEEeC
Confidence            478888999999999999999999998653322211  11  13799999999999987 43  3444433

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PLN02509 cystathionine beta-lyase

Probab=96.74  E-value=0.0025  Score=53.16  Aligned_cols=68  Identities=4%  Similarity=-0.007  Sum_probs=49.9

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC-CeeEEecCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL-PSPARTQRV   77 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~-~~~ll~r~~   77 (98)
                      ..+|.+.|+++|+++|++||+++-||.+.+...... . .  -..+|-+...++|||+-+-++ +.++..+++
T Consensus       228 NPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~-p-l--~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~  296 (464)
T PLN02509        228 NPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSR-P-L--ELGADIVMHSATKFIAGHSDVMAGVLAVKGE  296 (464)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCC-h-h--hcCCcEEEecCcccccCCCccceeEEEeccH
Confidence            457889999999999999999999999865443321 1 1  135899999999999987332 455554443

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.74  E-value=0.0027  Score=52.35  Aligned_cols=62  Identities=8%  Similarity=0.024  Sum_probs=46.0

Q ss_pred             cccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEe
Q psy2484           8 NGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPART   74 (98)
Q Consensus         8 ~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~   74 (98)
                      +|.+=|+++|+++|+++|+-++||++.+......... .   .||-++...|||++-+ +.  +.+++.
T Consensus       168 ~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p~~-~---GaDivv~S~~K~l~G~-gd~~gG~vv~  231 (437)
T PRK05613        168 QADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLE-L---GADVVVASLTKFYTGN-GSGLGGVLID  231 (437)
T ss_pred             CCcccCHHHHHHHHHHcCCeEEEECCCccccccChHH-h---CCCEEEeeccceecCC-CcceeEEEEe
Confidence            4677899999999999999999999754333222111 1   3799999999999987 54  555553

>PRK05939 hypothetical protein; Provisional

Probab=96.72  E-value=0.0018  Score=52.41  Aligned_cols=58  Identities=10%  Similarity=0.111  Sum_probs=44.5

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      ..+|.+-|+++|+++|+++|+|+.||...+....+.....    .+|-+.-..+||++-+ +.
T Consensus       142 NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~~~~----gaDivv~S~sK~~~g~-g~  199 (397)
T PRK05939        142 NPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRPKDV----GASLVINSLSKYIAGH-GN  199 (397)
T ss_pred             CCCCCHHhHHHHHHHHHHcCCEEEEECCcccccccCcccc----CCEEEEecCeecccCC-CC
Confidence            3578889999999999999999999997544332211111    4888999999999987 54

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=96.70  E-value=0.0031  Score=47.65  Aligned_cols=60  Identities=17%  Similarity=0.232  Sum_probs=42.5

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCC--ccCccccccCccccCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPL--QPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi--~~ADS~t~d~HKwL~vP   65 (98)
                      +.+|...|+++|.++|+++|+|+.+|.+......-...    ...++  +..|-+...++|+|+.+
T Consensus       157 ~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~  222 (360)
T TIGR00858       157 SMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSY  222 (360)
T ss_pred             cCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhcc
Confidence            35788899999999999999999999976432211111    12233  23466677899999987

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=96.67  E-value=0.0033  Score=50.36  Aligned_cols=66  Identities=9%  Similarity=-0.053  Sum_probs=48.3

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQRV   77 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~~   77 (98)
                      .+|...++++|+++|+++|+|+-||.+.+......+  +  -..+|-++...+||++-| +.  +.+++.+++
T Consensus       158 Ptg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p--~--~~gaDivv~S~sK~l~g~-~~~~gG~vv~~~~  225 (388)
T PRK07811        158 PLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQP--L--ALGADVVVHSTTKYIGGH-SDVVGGALVTNDE  225 (388)
T ss_pred             CcceecCHHHHHHHHHHcCCEEEEECCCCccccCCc--h--hhCCcEEEecCceeecCC-CCcEEEEEEECCH
Confidence            468889999999999999999999997654322111  1  125798999999999988 42  345555543

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=96.65  E-value=0.0034  Score=48.58  Aligned_cols=60  Identities=13%  Similarity=0.097  Sum_probs=40.7

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCCc-cCccccccCccccCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPLQ-PGHSVSLPLGTWLNLP   65 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi~-~ADS~t~d~HKwL~vP   65 (98)
                      +.+|.+.|+++|+++|++||+|+.+|.+.+....-...    ..-+++ ..|=+....+|+++.+
T Consensus       174 ~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  238 (385)
T TIGR01825       174 SMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVV  238 (385)
T ss_pred             cCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcC
Confidence            45788999999999999999999999986432211100    011222 2333456889999987

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=96.64  E-value=0.00071  Score=53.61  Aligned_cols=56  Identities=5%  Similarity=-0.029  Sum_probs=44.5

Q ss_pred             CCCcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484           1 MEIGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         1 ~taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      +|..+|++|...|+++|   ++++|+.+=||+. ..+..-+.      ++.+|=++...||||+-|
T Consensus       134 ~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~id------v~~~D~~~~s~~K~lg~~  190 (361)
T TIGR01366       134 WAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVD------IAETDVYYFAPQKNFASD  190 (361)
T ss_pred             EcccCCccceecccccc---cccCCCeEEEEcCccccCCCCC------HHHCCEEEEEchhhcCCC
Confidence            36688999999999888   5899999999995 33333222      234899999999999988

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=96.63  E-value=0.0046  Score=50.04  Aligned_cols=57  Identities=7%  Similarity=-0.033  Sum_probs=43.7

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+-|+++|+++|+++|+++.||.+.+...... . +  -..+|-++...+||++.+ +.
T Consensus       154 Ptg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~-~-l--~~g~Divv~S~sK~l~g~-G~  210 (418)
T TIGR01326       154 PAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCR-P-I--DHGADIVVHSATKYIGGH-GT  210 (418)
T ss_pred             CCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCC-c-h--hcCCeEEEECccccccCC-cc
Confidence            46777899999999999999999999765432211 1 1  124899999999999987 53

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK04311 selenocysteine synthase; Provisional

Probab=96.60  E-value=0.003  Score=52.68  Aligned_cols=64  Identities=11%  Similarity=-0.069  Sum_probs=43.6

Q ss_pred             cCCChHHHHHHHHHcCceEEeecccchh-----hhcCCC-CC-C-CCccCccccccCccccCCCCCCCeeEEec
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHNLSS-----LALNSH-SP-S-PLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~~~a-----l~~~~~-~~-~-gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ..=|+++|+++|++||+.+-||+..|..     ..++.. .+ + --..+|-++..+||||+=| ..+ +++.|
T Consensus       235 ~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~~G-~i~g~  306 (464)
T PRK04311        235 KEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-QAG-IIVGK  306 (464)
T ss_pred             CcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-ceE-EEEEc
Confidence            4458999999999999999999843221     111111 11 1 1135899999999999999 554 44444

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=96.58  E-value=0.0043  Score=48.93  Aligned_cols=60  Identities=13%  Similarity=0.130  Sum_probs=42.7

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC-ccCccccccCccccCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL-QPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi-~~ADS~t~d~HKwL~vP   65 (98)
                      ..+|.+-|+++|.++|++||+||.||.+......-+..+    ..++ +..|-++-.+.|.++.+
T Consensus       188 ~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~  252 (402)
T TIGR01821       188 SMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVV  252 (402)
T ss_pred             CCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccC
Confidence            357889999999999999999999999744332222211    1232 34576666889999987

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK07671 cystathionine beta-lyase; Provisional

Probab=96.56  E-value=0.0044  Score=49.58  Aligned_cols=67  Identities=6%  Similarity=-0.054  Sum_probs=47.9

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC-CCeeEEecCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS-LPSPARTQRV   77 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-~~~~ll~r~~   77 (98)
                      .+|.+.++++|+++|+++|+++.||.+........ . .  -..+|-++..+.||++-|-+ .+.+++.+++
T Consensus       146 Ptg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~-p-~--~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~  213 (377)
T PRK07671        146 PLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQS-P-I--SLGADIVLHSATKYLGGHSDVVAGLVVVNSP  213 (377)
T ss_pred             CCCcccCHHHHHHHHHHcCCEEEEECCCCccccCC-h-h--hhCCeEEEecCcccccCCccceeEEEEeCcH
Confidence            46888999999999999999999999865322221 1 1  12568999999999997722 2444555543

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=96.53  E-value=0.004  Score=49.99  Aligned_cols=66  Identities=11%  Similarity=-0.042  Sum_probs=47.3

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQRV   77 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~~   77 (98)
                      .+|.+=|+++|+++|+++|+|+-||.+.+........ .   ..+|-++...+|||+-| +.  +.+++..++
T Consensus       149 PtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~---~GaDivv~S~sK~l~g~-~d~~gG~vi~~~~  216 (385)
T PRK08574        149 PTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL-R---HGADFVVHSLTKYIAGH-NDVVGGVAVAWSG  216 (385)
T ss_pred             CCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh-h---hCCcEEEeeCceeecCC-CCceeEEEEECcH
Confidence            4677778999999999999999999975433322211 1   23799999999999988 43  444555443

>PRK05968 hypothetical protein; Provisional

Probab=96.52  E-value=0.0032  Score=50.44  Aligned_cols=56  Identities=11%  Similarity=-0.018  Sum_probs=42.5

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      ..++...|+++|+++|++||+.++||++.+...... ....   .+|-++..++|+++.|
T Consensus       158 ~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~-p~~~---g~Divv~S~tK~l~g~  213 (389)
T PRK05968        158 SWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQR-PITL---GVDLVIHSASKYLGGH  213 (389)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccC-chhc---CCcEEEeeccccccCC
Confidence            346677999999999999999999999764332211 1112   3688999999999997

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=96.46  E-value=0.0067  Score=50.15  Aligned_cols=70  Identities=17%  Similarity=0.122  Sum_probs=46.3

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      |.++.--.-|++++++||++.|..|++|.+=-++|+....--.-++.||-+|..-||.|.=| .. .+++++
T Consensus       176 G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GP-rg-giI~~~  245 (399)
T PF00464_consen  176 GASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGP-RG-GIILTN  245 (399)
T ss_dssp             E-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SS-S--EEEEES
T ss_pred             CchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeecccccccc-Cc-eEEEEc
Confidence            45555556689999999999999999999744555544432234567999999999999999 55 455665

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK07050 cystathionine beta-lyase; Provisional

Probab=96.38  E-value=0.0042  Score=50.06  Aligned_cols=67  Identities=9%  Similarity=0.016  Sum_probs=47.4

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC-CeeEEecCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL-PSPARTQRV   77 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~-~~~ll~r~~   77 (98)
                      .+|...++++|+++|+++|+|+++|+++.......+... |   +|-++....|+++-.-++ +.+++.+++
T Consensus       162 p~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~-G---aDi~v~S~tK~~~g~~~~~gG~v~~~~~  229 (394)
T PRK07050        162 VTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEH-G---VDISVQALTKYQSGGSDVLMGATITADA  229 (394)
T ss_pred             CCccHhhHHHHHHHHHHcCCEEEEECCcccccccCHHHc-C---CeEEEEECCceecCCCCeeEEEEEECCH
Confidence            468899999999999999999999998655443322211 2   688888899999755232 344555543

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=96.36  E-value=0.0081  Score=48.19  Aligned_cols=68  Identities=9%  Similarity=-0.025  Sum_probs=48.7

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC-CCeeEEecCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS-LPSPARTQRV   77 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-~~~~ll~r~~   77 (98)
                      ..+|.+-|+++|+++|+++|+++-||.+........  ..  -..+|-++..++||++-|-+ .+.+++.+++
T Consensus       145 Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~--p~--~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~  213 (380)
T PRK06176        145 NPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQN--PL--LLGADIVVHSGTKYLGGHSDVVAGLVTTNNE  213 (380)
T ss_pred             CCCceecCHHHHHHHHHHcCCEEEEECCccccccCC--cc--ccCCCEEEecCceeccCCccceeeEEEecHH
Confidence            357788899999999999999999999765332211  11  13589999999999998722 2455555543

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.35  E-value=0.0069  Score=49.35  Aligned_cols=55  Identities=16%  Similarity=0.158  Sum_probs=43.4

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      .+|.+=|+++|+++|+++|+|+.||.+.........  +  -..+|-++...|||++-+
T Consensus       160 ptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~p--l--~~gaDivv~S~tK~lgg~  214 (427)
T PRK05994        160 PGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRP--I--EHGADIVVHSLTKFLGGH  214 (427)
T ss_pred             CCCeecCHHHHHHHHHHcCCEEEEECCccccccCCc--c--ccCCcEEEEcCccccCCC
Confidence            467788999999999999999999997654332211  1  135999999999999987

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=96.31  E-value=0.0052  Score=51.13  Aligned_cols=65  Identities=11%  Similarity=-0.059  Sum_probs=43.9

Q ss_pred             cCCChHHHHHHHHHcCceEEeecccchh-----hhcCCC--CCCC-CccCccccccCccccCCCCCCCeeEEecC
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHNLSS-----LALNSH--SPSP-LQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~~~a-----l~~~~~--~~~g-i~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .+=|+++|+++|++||+.+-||+..|..     .-++..  ..+. -..||=++...||||+=| .. .+++.|+
T Consensus       230 ~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~~-G~i~g~~  302 (454)
T TIGR00474       230 EEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-QA-GIIVGKK  302 (454)
T ss_pred             CCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC-eE-EEEEECH
Confidence            3568999999999999999999743221     011111  1111 235899999999999999 44 4555443

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PLN02242 methionine gamma-lyase

Probab=96.31  E-value=0.0061  Score=49.69  Aligned_cols=56  Identities=9%  Similarity=0.053  Sum_probs=43.7

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+-++++|+++|++||+|+.||.++. .+.......    .+|-+...++|+++.+ +.
T Consensus       175 PtG~v~dl~~I~~la~~~gi~livDea~~-~~~~~~~~~----g~divv~S~SK~l~g~-g~  230 (418)
T PLN02242        175 PTLTVADIPELARIAHEKGVTVVVDNTFA-PMVLSPARL----GADVVVHSISKFISGG-AD  230 (418)
T ss_pred             CCCcccCHHHHHHHHHHhCCEEEEECCCC-ccCCCHHHc----CCcEEEEeCccccCCC-CC
Confidence            47888899999999999999999999874 332221112    2799999999999988 53

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=96.25  E-value=0.01  Score=48.16  Aligned_cols=68  Identities=10%  Similarity=-0.023  Sum_probs=49.9

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQRVP   78 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~~~   78 (98)
                      ..+|.+.++++|+++|+++|+++=||.++.......  .+.  ..||=+...++|+++-| +.  +.+++.++++
T Consensus       156 NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~--pl~--~gaDivv~S~tK~l~g~-~~~~~G~vv~~~~~  225 (405)
T PRK08776        156 NPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQK--PLE--FGADLVLHSTTKYINGH-SDVVGGAVVARDAE  225 (405)
T ss_pred             CCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCC--ccc--ccCCEEEecCceeecCC-CCceEEEEEeCCHH
Confidence            357889999999999999999999999865432211  111  24787889999999988 42  5566666543

>PRK09064 5-aminolevulinate synthase; Validated

Probab=96.23  E-value=0.0072  Score=47.62  Aligned_cols=60  Identities=13%  Similarity=0.143  Sum_probs=41.9

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC-ccCccccccCccccCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL-QPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi-~~ADS~t~d~HKwL~vP   65 (98)
                      ..+|.+-|+++|.++|++||+||.||.+.+....-+..+    ..++ +..|=++-..+|.++.+
T Consensus       189 s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~  253 (407)
T PRK09064        189 SMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVM  253 (407)
T ss_pred             CCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhcc
Confidence            346888899999999999999999999754322222211    1222 34565655889999987

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.10  E-value=0.012  Score=48.29  Aligned_cols=57  Identities=12%  Similarity=0.070  Sum_probs=43.8

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~   67 (98)
                      ..+|.+=|+++|+++|+++|+++-||...+......+  +  --.+|=++...|||++-| +
T Consensus       160 NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~p--l--~~gaDivv~S~tK~lgg~-g  216 (431)
T PRK08248        160 NPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRP--I--EHGADIVVHSATKFIGGH-G  216 (431)
T ss_pred             CCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCCh--h--HcCCCEEEEcCccccCCC-C
Confidence            3468888999999999999999999997543221111  1  135888899999999999 6

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=96.10  E-value=0.015  Score=47.14  Aligned_cols=68  Identities=9%  Similarity=-0.028  Sum_probs=49.4

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC-CCeeEEecCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS-LPSPARTQRV   77 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-~~~~ll~r~~   77 (98)
                      -.+|.+=|+++|.++|+++|+|+-||.++.......+..    -.||=++...|||++-|-+ .+.+++.+++
T Consensus       149 NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~----~GaDivv~S~tK~l~G~~d~~gG~i~~~~~  217 (388)
T PRK08861        149 NPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLE----LGADFVIHSTTKYINGHSDVIGGVLITKTK  217 (388)
T ss_pred             CCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCcc----cCCCEEEeecceeccCCCcceeEEEEecHH
Confidence            347888899999999999999999999875543322111    1388899999999998722 2455555543

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=96.05  E-value=0.011  Score=46.81  Aligned_cols=59  Identities=8%  Similarity=0.109  Sum_probs=42.1

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCC-CccCccccccCccccCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSP-LQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~g-i~~ADS~t~d~HKwL~vP   65 (98)
                      .+|.+=|+++|.++|++||+|+.||.+......-++.+    ..+ .++.|=++-.++|.++.+
T Consensus       190 ~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~  253 (410)
T PRK13392        190 MDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL  253 (410)
T ss_pred             CCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc
Confidence            46888889999999999999999999755332222211    112 345675556899999998

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=95.93  E-value=0.018  Score=46.19  Aligned_cols=59  Identities=15%  Similarity=0.126  Sum_probs=43.0

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCC------C-CCCCCccCccccccCccccCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNS------H-SPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~------~-~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      ..|.+-|+++|.++|++||++|+||.+.+....-..      + -+.....+|-++...+|.++..
T Consensus       150 ~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~  215 (392)
T PLN03227        150 NTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSV  215 (392)
T ss_pred             CCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhcc
Confidence            468889999999999999999999996442222111      1 1222456799999999998844

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=95.90  E-value=0.0094  Score=47.92  Aligned_cols=56  Identities=5%  Similarity=-0.008  Sum_probs=43.6

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      ..+|...||++|+++|+++|+|+=||.+.+........    -..+|=+.-..+|||+-+
T Consensus       146 Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~pl----~~gaDivv~S~tK~l~G~  201 (377)
T TIGR01324       146 SITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPL----EHGVDISIQAGTKYLVGH  201 (377)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCcc----ccCceEEEecCceeccCC
Confidence            35788999999999999999999999976544433221    124677888899999876

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK07503 methionine gamma-lyase; Provisional

Probab=95.90  E-value=0.015  Score=46.88  Aligned_cols=56  Identities=9%  Similarity=-0.014  Sum_probs=42.9

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~   67 (98)
                      .+|.+-|+++|.++|+++|+++-||.+........  .+ + ..+|-+...++||++.+ +
T Consensus       162 PtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~--~l-~-~g~Di~v~S~tK~l~g~-g  217 (403)
T PRK07503        162 PNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQR--PL-E-LGADLVVHSATKYLGGH-G  217 (403)
T ss_pred             CCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCC--ch-h-hCCCEEEccccccccCC-C
Confidence            46888899999999999999999999865332211  11 1 25687888899999988 5

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=95.86  E-value=0.019  Score=47.31  Aligned_cols=56  Identities=9%  Similarity=-0.015  Sum_probs=43.6

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~   67 (98)
                      .+|.+=|+++|+++|+++|+.+.||++.+...... . +  -..+|=++...|||++-+ +
T Consensus       167 p~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~-p-l--~~GaDivv~S~tK~lgg~-G  222 (436)
T PRK07812        167 PQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIR-P-L--EHGADIVVHSATKYLGGH-G  222 (436)
T ss_pred             CCCeecCHHHHHHHHHHcCCEEEEECCCcccccCC-c-h--hcCCCEEEEecccccCCC-C
Confidence            46889999999999999999999999644332221 1 1  124899999999999977 5

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=95.86  E-value=0.0098  Score=49.49  Aligned_cols=73  Identities=12%  Similarity=0.059  Sum_probs=51.3

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCC-CCCccCc-------cccccCccccCCCCCCCeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSP-SPLQPGH-------SVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~-~gi~~AD-------S~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .|..|.+=++++|+++|+++|+=|+||-|.|+-+.+.+... .---.||       =++-..||.|.-- ..++++..|.
T Consensus       177 PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~al-tQts~lh~~~  255 (417)
T PF01276_consen  177 PTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLPAL-TQTSMLHVKG  255 (417)
T ss_dssp             S-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEET
T ss_pred             CCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhhccCccccccceeeeechhhccccc-ccceEEEecC
Confidence            35678888999999999999999999998777766664321 1223366       8888999999988 5667777776


Q ss_pred             CC
Q psy2484          77 VP   78 (98)
Q Consensus        77 ~~   78 (98)
                      ..
T Consensus       256 ~~  257 (417)
T PF01276_consen  256 DR  257 (417)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK09028 cystathionine beta-lyase; Provisional

Probab=95.83  E-value=0.0094  Score=48.59  Aligned_cols=56  Identities=13%  Similarity=0.062  Sum_probs=44.7

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      ..+|.+.|+++|+++|+++|+|+=||...+....+.+..    -.||=+.-..+|||+=+
T Consensus       157 NPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~----~GaDivv~S~tK~l~Gh  212 (394)
T PRK09028        157 SITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFE----MGVDISIQAATKYIVGH  212 (394)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCCccc----cCceEEEEeCCeEecCC
Confidence            347889999999999999999999999876544332221    24899999999999877

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=95.81  E-value=0.012  Score=47.47  Aligned_cols=55  Identities=9%  Similarity=-0.005  Sum_probs=42.7

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      .+|.+=|+++|.++|+++|+++.||.+.+......  ..  ...+|-++..++|+++-+
T Consensus       161 Ptg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~--~l--~~~~Divv~S~sK~l~g~  215 (398)
T PRK08249        161 PTLKIVDIERLAAAAKKVGALVVVDNTFATPINQN--PL--ALGADLVIHSATKFLSGH  215 (398)
T ss_pred             CCCccCCHHHHHHHHHHcCCEEEEECCcCccccCC--ch--hhCCCEEeccCceecCCC
Confidence            47888899999999999999999999865332211  11  135788889999999976

>PRK07582 cystathionine gamma-lyase; Validated

Probab=95.81  E-value=0.014  Score=46.35  Aligned_cols=55  Identities=11%  Similarity=-0.054  Sum_probs=40.9

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      .+|.+-|+++|+++|+++|+++-||.+........  .++  ..+|=++...+|||+-|
T Consensus       144 Ptg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~--p~~--~g~Divv~S~sK~l~G~  198 (366)
T PRK07582        144 PGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQR--PLE--LGADLVVASDTKALTGH  198 (366)
T ss_pred             CCCCccCHHHHHHHHHHcCCEEEEECCCCCccccC--chh--cCCcEEEecccccccCC
Confidence            35778899999999999999999999764322111  111  24688999999999765

>PRK08064 cystathionine beta-lyase; Provisional

Probab=95.78  E-value=0.021  Score=45.86  Aligned_cols=68  Identities=10%  Similarity=-0.007  Sum_probs=48.5

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC-CCeeEEecCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS-LPSPARTQRV   77 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-~~~~ll~r~~   77 (98)
                      ..+|.+-|+++|.++|+++|+++-||.+.+......+..    -.+|=+...+|||++-|-+ .+.+++.+++
T Consensus       149 NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~~----~g~Divv~S~tK~~~G~~~~laG~~v~~~~  217 (390)
T PRK08064        149 NPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLD----LGADVVLHSATKFLAGHSDVLAGLAVVKDE  217 (390)
T ss_pred             CCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCchh----hCCcEEEeecceeccCCccceeEEEEeCCH
Confidence            347889999999999999999999999865433221111    1368888999999987633 2455555543

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=95.71  E-value=0.019  Score=45.38  Aligned_cols=69  Identities=7%  Similarity=-0.049  Sum_probs=45.5

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      .+|..-++++|.++|++||+++-+|++.+.................++++.+.|.+...  .+.+++..++
T Consensus       128 ~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l~~g--~gG~~~~~~~  196 (375)
T PRK11706        128 YAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAG--EGGALLINDP  196 (375)
T ss_pred             CCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCcccccc--CCeEEEECCH
Confidence            46777899999999999999999999743332222222222334456666666999665  4556666543

>PRK10534 L-threonine aldolase; Provisional

Probab=95.64  E-value=0.0065  Score=46.31  Aligned_cols=61  Identities=25%  Similarity=0.262  Sum_probs=39.1

Q ss_pred             ccccccCCChHHH---HHHHHHcCceEEeecccchhhhcC-CCCCCCC-ccCccccccCccccCCC
Q psy2484           5 SSLNGHVDNVSLL---QEICAKYNLWLHLRGHNLSSLALN-SHSPSPL-QPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         5 tt~~Ga~D~l~~i---~~ic~~~~lWlHVDga~~~al~~~-~~~~~gi-~~ADS~t~d~HKwL~vP   65 (98)
                      ++++|.+-|.++|   .++|++|++|++||.++....... ......+ +..|.+++.++|.++++
T Consensus       137 np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~  202 (333)
T PRK10534        137 NTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP  202 (333)
T ss_pred             cCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc
Confidence            4567888776655   568899999999999744221100 1111111 23476777899999988

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=95.44  E-value=0.034  Score=45.00  Aligned_cols=65  Identities=8%  Similarity=-0.041  Sum_probs=47.0

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR   76 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~   76 (98)
                      .+|.+=|+++|+++|+++|+++=||.+........... .   .+|=++..++||++.. +.  +.+++.++
T Consensus       167 ptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~-~---gaDivv~S~tK~l~g~-g~~~gG~v~~~~  233 (403)
T PRK07810        167 PMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLP-L---GADVVVYSGTKHIDGQ-GRVLGGAILGDR  233 (403)
T ss_pred             CCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChhh-c---CCcEEEccCCceecCC-cCceeEEEEeCh
Confidence            47888899999999999999999999864332211111 1   3788899999999886 53  34555444

>PRK15029 arginine decarboxylase; Provisional

Probab=95.44  E-value=0.02  Score=50.77  Aligned_cols=71  Identities=15%  Similarity=0.055  Sum_probs=53.9

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-C-CCCC-------ccCc-cccccCccccCCCCCCCeeEEec
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S-PSPL-------QPGH-SVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~-~~gi-------~~AD-S~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      |..|.+=++++|+++|+++++-|+||-|.|+-+.+.+. + ...+       ..|| =++=..||.|..- .-++++-.|
T Consensus       322 TY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~al-TQaS~LHv~  400 (755)
T PRK15029        322 TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-SQASYIHVR  400 (755)
T ss_pred             CCcceeeCHHHHHHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhcccch-hhhhhheeC
Confidence            66788999999999999999999999987776555443 2 2334       3588 7777999999987 555666665


Q ss_pred             CC
Q psy2484          76 RV   77 (98)
Q Consensus        76 ~~   77 (98)
                      ..
T Consensus       401 ~~  402 (755)
T PRK15029        401 EG  402 (755)
T ss_pred             CC
Confidence            43

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=95.43  E-value=0.018  Score=45.63  Aligned_cols=59  Identities=10%  Similarity=0.093  Sum_probs=39.5

Q ss_pred             cccccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCC-ccCccccccCcccc
Q psy2484           4 GSSLNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPL-QPGHSVSLPLGTWL   62 (98)
Q Consensus         4 Gtt~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi-~~ADS~t~d~HKwL   62 (98)
                      |+...|.+   .||.+|.++|++||.|+-||-+++............. ..+|=++..++|+|
T Consensus       144 g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKal  206 (346)
T TIGR03576       144 GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLM  206 (346)
T ss_pred             CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhc
Confidence            45566777   8999999999999999999998654332110110000 12566777899976

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=95.37  E-value=0.025  Score=45.26  Aligned_cols=69  Identities=6%  Similarity=-0.044  Sum_probs=43.8

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .+|..=++++|.++|++||+++-+|++.+...........-+....++.+.+-|-+..- .-+.+++.++
T Consensus       128 ~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K~l~~g-~~gG~v~~~~  196 (376)
T TIGR02379       128 YAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETKNYTSG-GEGGALLIND  196 (376)
T ss_pred             CCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCCcCccc-CCceEEEECC
Confidence            45777799999999999999999999743322122222332334556777776766442 1345555554

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=95.23  E-value=0.039  Score=44.12  Aligned_cols=67  Identities=6%  Similarity=-0.122  Sum_probs=49.1

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQRVP   78 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~~~   78 (98)
                      .+|.+-++++|+++|+++|+|+=||.+.+..+...  .+  -..||=++...+||++-+ +.  +.+++.++++
T Consensus       148 Ptg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~--pl--~~gaDivv~S~tK~l~g~-~d~~gG~v~~~~~~  216 (364)
T PRK07269        148 PLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQR--PI--ELGADIVLHSATKYLSGH-NDVLAGVVVTNDLE  216 (364)
T ss_pred             CCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCC--ch--hhCCcEEEecCceeccCC-CcccceEEEeCcHH
Confidence            35777799999999999999999999854433221  11  135889999999999987 43  5566665543

>PRK05367 glycine dehydrogenase; Provisional

Probab=95.15  E-value=0.028  Score=50.88  Aligned_cols=58  Identities=10%  Similarity=0.067  Sum_probs=43.7

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~   67 (98)
                      ..+|.+.|+++|+++|+++|.++=||+.-.+..++..   .|--.||=++.+.|||+ +|++
T Consensus       216 ~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~---pge~GaDi~vgs~qkfg-~P~g  273 (954)
T PRK05367        216 GTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTP---PGEMGADIAVGSAQRFG-VPMG  273 (954)
T ss_pred             CCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCC---hhhcCCCEEEeeCcccC-CCCC
Confidence            4689999999999999999999999984222222221   25556899999999995 5544

>PRK06460 hypothetical protein; Provisional

Probab=95.07  E-value=0.032  Score=44.55  Aligned_cols=53  Identities=11%  Similarity=0.076  Sum_probs=39.9

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLN   63 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~   63 (98)
                      .+|.+=|+++|+++|+++|+++.||.+.......  ..+  ...+|=+...++||++
T Consensus       142 PtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~--~~l--~~~~divv~S~sK~l~  194 (376)
T PRK06460        142 PLLRVVDITELSKVCKENGSILIVDATFSTPINQ--KPL--ELGADIVVHSASKFLA  194 (376)
T ss_pred             CCCcccCHHHHHHHHHHcCCEEEEECCcCccccC--Chh--hcCCCEEEeecceecc
Confidence            4788889999999999999999999976432111  111  1237888899999997

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=94.77  E-value=0.055  Score=44.26  Aligned_cols=63  Identities=8%  Similarity=0.033  Sum_probs=46.0

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEE
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPAR   73 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll   73 (98)
                      ..+|.+=|+++|.++|++||+++=||.+.+.......  +  -..+|=+....+||++-+ +.  +.+++
T Consensus       154 NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p--~--~~gaDivv~S~tK~l~G~-g~~~gG~v~  218 (425)
T PRK06084        154 NPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRP--F--EHGADIVVHSLTKYIGGH-GTSIGGIVV  218 (425)
T ss_pred             CCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCh--h--hcCCCEEEECchhccccc-ccceeEEEE
Confidence            4577877899999999999999999997654332211  1  124898889999999887 43  44444

>PLN02822 serine palmitoyltransferase

Probab=94.70  E-value=0.049  Score=45.14  Aligned_cols=58  Identities=14%  Similarity=0.180  Sum_probs=43.8

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-C----CCCC--ccCccccccCccccCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S----PSPL--QPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~----~~gi--~~ADS~t~d~HKwL~vP   65 (98)
                      ++|.+=|+++|+++|++||+||-+|-+.+... +.+. +    .-|+  +..|=++...+|.++.+
T Consensus       257 ~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gv-lG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~  321 (481)
T PLN02822        257 NSGQIAPLDEIVRLKEKYRFRVLLDESNSFGV-LGKSGRGLSEHFGVPIEKIDIITAAMGHALATE  321 (481)
T ss_pred             CCCCccCHHHHHHHHHHcCCEEEEECCccccc-cCCCCCChHHHcCCCCCCCeEEEecchhhhhhC
Confidence            47999999999999999999999999754222 2211 1    2244  46787888899999977

>PRK06434 cystathionine gamma-lyase; Validated

Probab=94.63  E-value=0.048  Score=44.28  Aligned_cols=64  Identities=13%  Similarity=0.057  Sum_probs=46.2

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQRV   77 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~~   77 (98)
                      .++.+-|+++|+++|++++++  ||+..++.....  .+.  ..||=++..+||+++-+ +.  +.+++.+++
T Consensus       160 pt~~v~Di~~I~~la~~~~lv--VD~t~~s~~~~~--pl~--~gaDivv~S~tK~i~G~-~d~~gG~vv~~~~  225 (384)
T PRK06434        160 PTLKVPDIKNVSSFCHENDVI--VDATFASPYNQN--PLD--LGADVVIHSATKYISGH-SDVVMGVAGTNNK  225 (384)
T ss_pred             CCceeecHHHHHHHHHHcCeE--EECCCCCcccCC--chh--cCCCEEEeecccccCCC-CCceEEEEecCcH
Confidence            467788999999999999965  699854332211  121  35999999999999988 53  556666554

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=94.60  E-value=0.047  Score=42.90  Aligned_cols=63  Identities=16%  Similarity=0.053  Sum_probs=38.7

Q ss_pred             ccccCCC----hHHHHHHHHHcCceEEeeccc-chhhhcCCC---CCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           7 LNGHVDN----VSLLQEICAKYNLWLHLRGHN-LSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         7 ~~Ga~D~----l~~i~~ic~~~~lWlHVDga~-~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      .+|.+-|    +++|+++|++||++|.+|-+. |... ..+.   ...|+ ..|-+++  .|+|+-.+-++.++.
T Consensus       195 ~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr-~g~~~~~~~~~~-~pDi~t~--sK~l~~G~~ig~~~~  265 (398)
T PRK03244        195 EAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGR-TGAWFAHQHDGV-TPDVVTL--AKGLGGGLPIGACLA  265 (398)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcc-cchHHhhhhhCC-CCCEEEE--chhhhCCcccEEEEE
Confidence            3566655    999999999999999999963 2211 1100   12344 3665544  799984322444444

>PRK06234 methionine gamma-lyase; Provisional

Probab=94.57  E-value=0.076  Score=42.75  Aligned_cols=64  Identities=8%  Similarity=-0.015  Sum_probs=46.5

Q ss_pred             ccccCCChHHHHHHHHHc--CceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEec
Q psy2484           7 LNGHVDNVSLLQEICAKY--NLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQ   75 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~--~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r   75 (98)
                      .+|.+-|+++|.++|+++  |+|+-||.+++...... . + + ..+|=+...++|+++.+ +.  +.+++.+
T Consensus       161 PtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~-~-l-~-~g~Divv~S~sK~l~g~-g~~~gG~v~~~  228 (400)
T PRK06234        161 PTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQR-P-L-Q-LGADVVVHSATKYLNGH-GDVIAGFVVGK  228 (400)
T ss_pred             CCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCC-c-h-h-hCCcEEEeeccccccCC-CCceeEEEEec
Confidence            478888999999999997  99999999865433211 1 1 1 14788888899999988 53  3444444

>PRK08114 cystathionine beta-lyase; Provisional

Probab=94.52  E-value=0.051  Score=44.52  Aligned_cols=57  Identities=9%  Similarity=-0.034  Sum_probs=45.8

Q ss_pred             ccccccCCChHHHHHHHHHcC--ceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYN--LWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~--lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      +..+|.+=||++|+++|+++|  +.+-||+..+....+....+    .||=+....||||+-+
T Consensus       157 sNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~----GaDivv~S~tKyl~Gh  215 (395)
T PRK08114        157 GSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDF----GIDISIQAGTKYLVGH  215 (395)
T ss_pred             CCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHc----CCcEEEEcCcccccCC
Confidence            455788889999999999985  99999997655544332222    3999999999999999

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=94.27  E-value=0.085  Score=41.85  Aligned_cols=59  Identities=10%  Similarity=0.061  Sum_probs=39.8

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC-ccCccccccCccccCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL-QPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi-~~ADS~t~d~HKwL~vP   65 (98)
                      .+|.+-|+++|.++|++||+++.||.+.+.++.-+..+    ..++ ++.|=+.-.+.|.++.+
T Consensus       189 ~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~  252 (406)
T PRK13393        189 MDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVM  252 (406)
T ss_pred             CCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhccc
Confidence            46888899999999999999999999744333222211    1122 22343334788999987

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=94.21  E-value=0.011  Score=45.29  Aligned_cols=60  Identities=8%  Similarity=0.049  Sum_probs=40.1

Q ss_pred             ccccccCCChHHHHHHHHHc--CceEEeecccchhhhcCCC---CCCCCccCccc-cccCccccCCCCCC
Q psy2484           5 SSLNGHVDNVSLLQEICAKY--NLWLHLRGHNLSSLALNSH---SPSPLQPGHSV-SLPLGTWLNLPLSL   68 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~--~lWlHVDga~~~al~~~~~---~~~gi~~ADS~-t~d~HKwL~vP~~~   68 (98)
                      ...+|.+=|++++.++|+.+  |+++.+|.++.. +...+.   .....  .+.+ ...++||++.| +.
T Consensus       152 ~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~--~~~i~~~S~sK~~g~~-G~  217 (346)
T TIGR01141       152 NNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGE-FSGEPSTLPLLAEY--PNLIVLRTLSKAFGLA-GL  217 (346)
T ss_pred             CCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhh-hcCCccHHHHHhhC--CCEEEEehhhHhhhch-hh
Confidence            34688999999999999987  999999997542 111111   11111  1223 45889999988 64

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=93.96  E-value=0.1  Score=40.61  Aligned_cols=62  Identities=19%  Similarity=0.138  Sum_probs=38.0

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCCCCCCeeE
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSPA   72 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~l   72 (98)
                      +|.+-|    +++|+++|++||+++.+|.+..+.....+.   ...++ ..|=+  ...|+|+..+-++.++
T Consensus       204 ~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~-~~d~~--t~sK~l~~g~~~g~~~  272 (413)
T cd00610         204 GGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGV-EPDIV--TLGKGLGGGLPLGAVL  272 (413)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCC-CCCeE--EEcccccCccccEEEE
Confidence            466666    999999999999999999963321011111   11232 34533  4469999764455443

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK06225 aspartate aminotransferase; Provisional

Probab=93.82  E-value=0.082  Score=41.30  Aligned_cols=60  Identities=12%  Similarity=0.097  Sum_probs=37.0

Q ss_pred             cccc---CCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc-cCccccccCccccCCCCCC
Q psy2484           7 LNGH---VDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ-PGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga---~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~-~ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.   .+++++|.++|+++|+++.+|.++.-. .........+. ...-....+.|+|+.| +.
T Consensus       169 ptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~i~~~s~SK~~g~~-G~  232 (380)
T PRK06225        169 PLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDF-AREHTLAAEYAPEHTVTSYSFSKIFGMA-GL  232 (380)
T ss_pred             CCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHH-hccCCchhhcCCCCEEEEeechhhcCCc-cc
Confidence            3565   357999999999999999999975321 11111111111 1122344678999998 75

>PLN02483 serine palmitoyltransferase

Probab=93.82  E-value=0.11  Score=43.19  Aligned_cols=60  Identities=10%  Similarity=0.099  Sum_probs=41.8

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC--ccCccccccCccccCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL--QPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi--~~ADS~t~d~HKwL~vP   65 (98)
                      ...|.+-++++|.++|++||+||-+|.+......-+..+    ..++  ...|=+.-.++|.++.+
T Consensus       251 s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~  316 (489)
T PLN02483        251 SMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSC  316 (489)
T ss_pred             CCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccC
Confidence            346788899999999999999999999753221111111    1233  34566667999999987

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=93.75  E-value=0.069  Score=42.28  Aligned_cols=54  Identities=11%  Similarity=0.049  Sum_probs=41.6

Q ss_pred             cccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484           8 NGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         8 ~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      +|...++++|.++|+++|+|+-||.+++......+  .  -..+|=++-.+.|+++-+
T Consensus       149 ~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p--~--~~g~di~i~S~sK~~~g~  202 (366)
T PRK08247        149 LMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRP--L--EEGADIVIHSATKYLGGH  202 (366)
T ss_pred             CCcHHHHHHHHHHHHHcCCEEEEECCCccccccCc--h--hcCCcEEEeecceeccCC
Confidence            67888999999999999999999998754332211  1  134788888899999865

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=93.73  E-value=0.048  Score=41.91  Aligned_cols=60  Identities=8%  Similarity=0.070  Sum_probs=40.8

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCC-CccCcccc--ccCccccCCCCCC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSP-LQPGHSVS--LPLGTWLNLPLSL   68 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~g-i~~ADS~t--~d~HKwL~vP~~~   68 (98)
                      ...+|.+-|.++|.++|+++|+|+.+|.++....  ... ... ....|.+.  -.+.|-+++| +.
T Consensus       168 ~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~--~~~-~~~~~~~~~~vi~~~S~SK~~g~~-Gl  230 (361)
T PRK00950        168 NNPTGNLIPEEDIRKILESTDALVFVDEAYVEFA--EYD-YTPLALEYDNLIIGRTFSKVFGLA-GL  230 (361)
T ss_pred             CCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhC--ccc-hHHHHHhcCCEEEEEeehHhhcCc-hh
Confidence            3468999999999999999999999999864321  111 111 11223332  2678999998 64

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=93.70  E-value=0.11  Score=42.60  Aligned_cols=69  Identities=13%  Similarity=0.171  Sum_probs=43.6

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      ..|..-++++|.++|++||+++-+|++-.........+...+-.+=.+.+.+.|-+..  +-+.+++.+++
T Consensus       168 ~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~gd~~~fSf~~~k~~~~--geGG~l~t~d~  236 (438)
T PRK15407        168 TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFGDIATLSFYPAHHITM--GEGGAVFTNDP  236 (438)
T ss_pred             CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccCceEEEeCCCCCCccc--cCceEEEECCH
Confidence            3567779999999999999999999964333222222222222233455666676543  44667777654

>PRK06108 aspartate aminotransferase; Provisional

Probab=93.63  E-value=0.098  Score=40.41  Aligned_cols=57  Identities=7%  Similarity=0.039  Sum_probs=36.0

Q ss_pred             CCChHHHHHHHHHcCceEEeecccchhhhcCCCC---CCCCcc---CccccccCccccCCCCCC
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS---PSPLQP---GHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~---~~gi~~---ADS~t~d~HKwL~vP~~~   68 (98)
                      .+++++|.++|+++|+|+.+|.++.....-++..   ...+..   -.=+...++|.+++| +.
T Consensus       177 ~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-G~  239 (382)
T PRK06108        177 RDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMT-GW  239 (382)
T ss_pred             HHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCc-cc
Confidence            4568999999999999999999754332211111   111111   112345899999988 74

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=93.60  E-value=0.1  Score=43.19  Aligned_cols=69  Identities=12%  Similarity=0.014  Sum_probs=49.2

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      =..|.||...|+.+|+++|++||.-+=||+. ..++-=+   +.+ -=..|=+..-.+|.|+.|=+.+.+.+.+
T Consensus       139 H~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~---~vd-~wgiDv~itgSQK~l~~PPGla~v~~S~  208 (383)
T COG0075         139 HNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPL---KVD-EWGIDVAITGSQKALGAPPGLAFVAVSE  208 (383)
T ss_pred             eccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCccc---chh-hcCccEEEecCchhccCCCccceeEECH
Confidence            3579999999999999999999999999994 2222111   111 0024666777899999986776655543

>PRK09082 methionine aminotransferase; Validated

Probab=93.50  E-value=0.087  Score=41.41  Aligned_cols=61  Identities=13%  Similarity=0.100  Sum_probs=38.8

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--C---CCCCccCccccccCccccCCCCCC
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--S---PSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~---~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+   +++++|.++|++||+|+.+|-+++-...-.+.  .   ..+...-.=+...+.|.+++| +.
T Consensus       175 PtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~-G~  243 (386)
T PRK09082        175 PSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVT-GW  243 (386)
T ss_pred             CCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccch-hh
Confidence            46654   78999999999999999999986433221111  1   122211112233678999998 74

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=93.46  E-value=0.1  Score=43.75  Aligned_cols=74  Identities=18%  Similarity=0.175  Sum_probs=56.6

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP   78 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~   78 (98)
                      +|.+..--.=|++++++||++-|.+|=+|.+=-+.|+....--+-+..||=+|-.-||.|.=| . +.+++.++++
T Consensus       172 ~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGP-r-GG~Il~~~ee  245 (413)
T COG0112         172 AGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGP-R-GGIILTNDEE  245 (413)
T ss_pred             ECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCC-C-ceEEEeccHH
Confidence            455555566789999999999999999999755555544333356778999999999999999 3 5566777643

>PRK05764 aspartate aminotransferase; Provisional

Probab=93.41  E-value=0.12  Score=40.21  Aligned_cols=67  Identities=6%  Similarity=0.099  Sum_probs=40.5

Q ss_pred             cccC---CChHHHHHHHHHcCceEEeecccchhhhcCCCC---CCCC--cc--CccccccCccccCCCCCCCeeEEecC
Q psy2484           8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS---PSPL--QP--GHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~---~~gi--~~--ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +|.+   +++++|.++|++||+|+.+|-+++... .....   ...+  +.  -+=....+.|.+++| +.-.-.+..+
T Consensus       177 tG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~-G~RiG~i~~~  253 (393)
T PRK05764        177 TGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLV-YDGAEFTSIASLSPELRDRTITVNGFSKAYAMT-GWRLGYAAGP  253 (393)
T ss_pred             CCcccCHHHHHHHHHHHHHCCcEEEEecccccee-eCCCCcccHHHcCCCCcCCEEEEecCcccccCc-cceeEEEecC
Confidence            5665   678999999999999999999764322 21111   1111  11  112233578999999 7533344333

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=93.29  E-value=0.041  Score=42.44  Aligned_cols=59  Identities=20%  Similarity=0.216  Sum_probs=38.4

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCCCCCCC---ccCccccccCccccCCCCCC
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPL---QPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi---~~ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+=+   +.+|+++|+++|+|+.+|.++....  +.......   ...+=+...++|+++.| +.
T Consensus       137 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~-G~  201 (330)
T TIGR01140       137 PTGRLIPPETLLALAARLRARGGWLVVDEAFIDFT--PDASLAPQAARFPGLVVLRSLTKFFGLA-GL  201 (330)
T ss_pred             CCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccC--CccchhhHhccCCCEEEEEecchhhcCc-hh
Confidence            4566556   7778888999999999999865332  11111111   12234455899999999 75

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=93.16  E-value=0.16  Score=39.71  Aligned_cols=55  Identities=25%  Similarity=0.281  Sum_probs=35.6

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeeccc-chhh---hcCCCCCCCCccCccccccCccccCCCC
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHN-LSSL---ALNSHSPSPLQPGHSVSLPLGTWLNLPL   66 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~-~~al---~~~~~~~~gi~~ADS~t~d~HKwL~vP~   66 (98)
                      +|.+=|    +++|+++|++||++|.+|... +...   .+. ....++ ..|-+++  .|+|+-++
T Consensus       191 ~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~-~~~~~~-~pd~~~~--sK~l~~g~  253 (400)
T PTZ00125        191 AGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLA-HDHEGV-KPDIVLL--GKALSGGL  253 (400)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhH-HHhcCC-CCCEEEE--cccccCCC
Confidence            455555    999999999999999999963 2111   001 012344 3566654  59998653

>PRK07777 aminotransferase; Validated

Probab=93.10  E-value=0.19  Score=39.29  Aligned_cols=62  Identities=5%  Similarity=-0.033  Sum_probs=40.0

Q ss_pred             CChHHHHHHHHHcCceEEeecccchhhhcCCC-----CCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484          12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-----SPSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus        12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-----~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      +++++|.++|++|++|+-+|.++.....-...     ...+...-+=+...+.|.+++| +.-.-.+.
T Consensus       179 ~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-GlRiG~~~  245 (387)
T PRK07777        179 AELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVT-GWKIGWAC  245 (387)
T ss_pred             HHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCc-CceeEEEe
Confidence            67999999999999999999976432211111     1222222334467799999999 75333333

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=93.07  E-value=0.079  Score=40.89  Aligned_cols=53  Identities=13%  Similarity=0.190  Sum_probs=33.7

Q ss_pred             cCCChHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCCccCccccccCccccCCCCCC
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      ..+++++|.++|++||+|+.+|.+... +.....    ...++ ..|-+  ...|.++ | +.
T Consensus       189 ~~~~l~~i~~l~~~~~~~~i~De~~~~-~~~~g~~~~~~~~~~-~~d~~--t~sK~~~-~-G~  245 (379)
T TIGR00707       189 SAEFLKALREICKDKDALLIFDEVQTG-IGRTGKFFAYEHYGI-EPDII--TLAKGLG-G-GV  245 (379)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccC-CCccchhhhHHhcCC-CCCEE--EEccccc-C-Cc
Confidence            345689999999999999999997532 111111    01122 23544  4699999 6 54

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=92.94  E-value=0.14  Score=46.95  Aligned_cols=57  Identities=11%  Similarity=0.074  Sum_probs=42.5

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~   67 (98)
                      .+|.+.|+++|+++|+++|+.+=| |+-..++..-+.  .|--.||=++-+.|||+ +|++
T Consensus       245 ~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~--pge~GADi~vgsgqKwg-~P~G  301 (993)
T PLN02414        245 TDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKP--PGEWGADIVVGSAQRFG-VPMG  301 (993)
T ss_pred             CCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCC--HhhccCcEEEECCCccc-cCCC
Confidence            589999999999999999999999 653333322211  23335888999999997 7765

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=92.92  E-value=0.23  Score=40.03  Aligned_cols=67  Identities=9%  Similarity=-0.053  Sum_probs=46.9

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC-CeeEEecCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL-PSPARTQRV   77 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~-~~~ll~r~~   77 (98)
                      .+|.+=|+++|.++|+++|+++=||.++..... ... +.  ..||=++...+||++=+-++ +.+++.+++
T Consensus       149 PtG~v~di~~I~~ia~~~g~~vivDeay~~~~~-~~p-l~--~gaDivv~S~tK~l~G~~d~~~G~vi~~~~  216 (386)
T PRK08045        149 PLLRVVDIAKICHLAREAGAVSVVDNTFLSPAL-QNP-LA--LGADLVLHSCTKYLNGHSDVVAGVVIAKDP  216 (386)
T ss_pred             CCCEecCHHHHHHHHHHcCCEEEEECCCCcccc-CCc-hh--hCCCEEEeecceeccCCCCceeEEEEeCcH
Confidence            478888899999999999999999998654432 111 11  24687888999999865232 344555443

>PRK08361 aspartate aminotransferase; Provisional

Probab=92.53  E-value=0.18  Score=39.60  Aligned_cols=65  Identities=9%  Similarity=0.089  Sum_probs=41.9

Q ss_pred             cccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCC-ccCccccccCccccCCCCC--CCeeE
Q psy2484           6 SLNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPL-QPGHSVSLPLGTWLNLPLS--LPSPA   72 (98)
Q Consensus         6 t~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi-~~ADS~t~d~HKwL~vP~~--~~~~l   72 (98)
                      .-+|.+=|   +.+|.++|+++++|+++|.++..... .+.   ..... ..-+=++..++|.+++| +  ++.++
T Consensus       177 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~i~~~s~SK~~~~~-GlRiG~~~  250 (391)
T PRK08361        177 NPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLY-EGAKHYPMIKYAPDNTILANSFSKTFAMT-GWRLGFVI  250 (391)
T ss_pred             CCCCcCcCHHHHHHHHHHHHHcCeEEEEEccccccee-CCCCCCCHhhcCCCCEEEEecCchhcCCc-Hhhhhhhc
Confidence            34677767   88899999999999999997643221 111   11111 11233557889999999 7  45433

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=92.36  E-value=0.042  Score=43.18  Aligned_cols=62  Identities=11%  Similarity=0.031  Sum_probs=37.9

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      |-.+|.+|..     +.+++++||+.+=||+. ..+..-+.      ++..|-...-.||||| |.+.+.+++.+
T Consensus       145 ~h~~t~tG~~-----~~~i~~~~g~~~~VDa~qs~g~~~id------v~~~~~~~ss~~K~lG-P~G~g~l~~~~  207 (355)
T cd00611         145 CSNETIHGVE-----FDEVPDTGGVPLVADMSSNILSRPID------VSKFGVIYAGAQKNLG-PAGVTVVIVRK  207 (355)
T ss_pred             eCCcccccEE-----cceecccCCCeEEEEccccccCCCCC------HHHhCEEEeecccccC-CCceEEEEECH
Confidence            4567888886     23566679999999995 33333221      2222323333899999 54887555544

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=92.22  E-value=0.11  Score=41.07  Aligned_cols=60  Identities=12%  Similarity=0.054  Sum_probs=37.8

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccc--cccCccccCCCCCC
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSV--SLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~--t~d~HKwL~vP~~~   68 (98)
                      .+|.+   +++++|.++|+++|+|+++|.++.-... .+.   .+..+..-+.+  .-.+-|-++.| +.
T Consensus       181 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~vi~~~S~SK~~~~p-Gl  248 (403)
T TIGR01265       181 PCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVF-GDAPFIPMASFASIVPVLSLGGISKRWVVP-GW  248 (403)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccc-CCCCccchhhhccCCcEEEEeecccccCCC-cc
Confidence            46666   5699999999999999999998653321 211   11122111112  23678999999 75

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=92.03  E-value=0.064  Score=42.57  Aligned_cols=62  Identities=13%  Similarity=-0.001  Sum_probs=43.1

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      |-..|.+|..-|     ++++++++.+=||+. ..++.-+.      ++..|=++...||+|+ |-+.+.+.+.+
T Consensus       137 th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id------~~~~d~~~~ssqK~lg-P~Glg~l~~s~  199 (349)
T TIGR01364       137 CANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPID------VSKFGLIYAGAQKNIG-PAGLTVVIVRK  199 (349)
T ss_pred             cCCCCcccEecc-----eecccCCCeEEEEccccccCccCC------HHHccEEEEecccccC-CCceEEEEECH
Confidence            556788998765     677788999999995 33332221      2335688999999999 54776554443

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=91.99  E-value=0.071  Score=42.42  Aligned_cols=61  Identities=8%  Similarity=-0.011  Sum_probs=42.4

Q ss_pred             CCcccccccCC-ChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           2 EIGSSLNGHVD-NVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         2 taGtt~~Ga~D-~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      |--.|.+|... |+.+|      ||..+=||+. ..++.-+.      ++..|=++...||||+ |-+.+.+.+.+
T Consensus       148 th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~id------v~~~d~~~~ssqK~lg-P~Glg~l~~s~  210 (360)
T PRK05355        148 TSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPID------VSKFGLIYAGAQKNIG-PAGLTIVIVRE  210 (360)
T ss_pred             ccCCCcceEecCccccc------CCCcEEEEcCccccCccCC------HHHccEEEEecccccc-CCceEEEEECH
Confidence            44678999996 77766      8999999995 33333222      2234689999999999 64776554443

>PF05670 DUF814: Domain of unknown function (DUF814); InterPro: IPR008532 This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity

Probab=91.45  E-value=0.12  Score=33.93  Aligned_cols=48  Identities=15%  Similarity=0.315  Sum_probs=34.7

Q ss_pred             HHHHHHcCceEEeecccchhhhcCCCCCC----CCccCccccccCcc-ccCCC
Q psy2484          18 QEICAKYNLWLHLRGHNLSSLALNSHSPS----PLQPGHSVSLPLGT-WLNLP   65 (98)
Q Consensus        18 ~~ic~~~~lWlHVDga~~~al~~~~~~~~----gi~~ADS~t~d~HK-wL~vP   65 (98)
                      ..+++..++|||++...|+..++......    -++.|=.++.---| |=.-.
T Consensus        24 ~k~~~~~D~wfH~~~~pg~hvil~~~~~~~~~~~l~~AA~laa~~Ska~~~~~   76 (90)
T PF05670_consen   24 KKYARPNDLWFHADDFPGPHVILRNNPGDEPPPTLQEAAQLAASYSKAWKKGE   76 (90)
T ss_pred             HHhhhhcceeEeccCCCCCEEEEECCCCccchHHHHHHHHHHHHhCHhhccCC
Confidence            68899999999999999999888866321    35666666665555 44333

This annotation comes from O34693 from SWISSPROT where the N-terminal region is involved in this activity []. Hence the activity of this C-terminal domain is unknown. This domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.

>PRK05967 cystathionine beta-lyase; Provisional

Probab=91.07  E-value=0.2  Score=41.01  Aligned_cols=54  Identities=6%  Similarity=-0.026  Sum_probs=38.8

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLN   63 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~   63 (98)
                      ..++.+.||++|+++|+++|+|+-||..+.......+..    -.||=+.-..-|+++
T Consensus       160 NP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~----~GaDivv~S~tKy~~  213 (395)
T PRK05967        160 SNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLD----FGVDISIHAATKYPS  213 (395)
T ss_pred             CCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecChhH----cCCCEEEEecccccC
Confidence            347889999999999999999999999865443332211    126666667777744

>PLN02656 tyrosine transaminase

Probab=90.72  E-value=0.19  Score=40.08  Aligned_cols=61  Identities=11%  Similarity=0.074  Sum_probs=39.1

Q ss_pred             cccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCCC---CCCCccC-cccc-ccCccccCCCCCC
Q psy2484           6 SLNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS---PSPLQPG-HSVS-LPLGTWLNLPLSL   68 (98)
Q Consensus         6 t~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~---~~gi~~A-DS~t-~d~HKwL~vP~~~   68 (98)
                      ..+|.+   +++++|.++|++||+|+.+|.++.-.. ..+..   ...++.. ..|. -.+.|-+++| +.
T Consensus       180 NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~p-Gl  248 (409)
T PLN02656        180 NPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLA-FGSNPFVPMGVFGSIVPVLTLGSLSKRWIVP-GW  248 (409)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcc-cCCCCcccHHHhcccCcEEEEcccchhccCc-ce
Confidence            356766   789999999999999999999865322 22211   1111111 1233 3578998999 75

>KOG2467|consensus

Probab=90.63  E-value=0.46  Score=40.28  Aligned_cols=72  Identities=18%  Similarity=0.149  Sum_probs=55.5

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ||++..---=+..++++||++-|..|=+|=+-.+.|+....--.-.|-||=+|..-||.|.=| --+.+|.+|
T Consensus       195 aG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsLRGP-Rg~mIFyRk  266 (477)
T KOG2467|consen  195 AGTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSLRGP-RGAMIFYRK  266 (477)
T ss_pred             eccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccccCC-cceeEEEec
Confidence            455555555578899999999999999999766666655554567999999999999999999 444444444

>PRK07550 hypothetical protein; Provisional

Probab=90.47  E-value=0.76  Score=35.95  Aligned_cols=56  Identities=9%  Similarity=-0.056  Sum_probs=35.3

Q ss_pred             ChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCCccCc-cc-cccCccccCCCCCCCe
Q psy2484          13 NVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPLQPGH-SV-SLPLGTWLNLPLSLPS   70 (98)
Q Consensus        13 ~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi~~AD-S~-t~d~HKwL~vP~~~~~   70 (98)
                      .+++|.++|++||+|+.+|.+++.. ......    ....+.-+ .+ .....|.+++| +.-.
T Consensus       184 ~~~~i~~~~~~~~~~iI~Dd~y~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-G~Ri  245 (386)
T PRK07550        184 LLHELYDLARRHGIALILDETYRDF-DSGGGAPHDLFADPDWDDTLVHLYSFSKSYALT-GHRV  245 (386)
T ss_pred             HHHHHHHHHHHcCeEEEEeccchhh-ccCCCCCcchhhCCCccccEEEEecchhhccCc-ccce
Confidence            4889999999999999999986532 111111    11111111 22 46888999999 7533

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=90.37  E-value=0.54  Score=37.75  Aligned_cols=68  Identities=10%  Similarity=-0.005  Sum_probs=47.4

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC-CCeeEEecCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS-LPSPARTQRV   77 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-~~~~ll~r~~   77 (98)
                      ..+|.+=|+++|.++|+++|+++=||.++.......+.. .   .+|=+...++||++-+-+ ...+++.+++
T Consensus       147 NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~-~---gaDivv~S~sK~l~G~~~~~~G~i~~~~~  215 (382)
T TIGR02080       147 NPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLA-L---GADLVLHSCTKYLNGHSDVIAGAVIAKDP  215 (382)
T ss_pred             CCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCchh-h---CCCEEEeecceeccCCCCceeEEEEeCCH
Confidence            456888899999999999999999999875433221111 1   367888899999986524 2344455554

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK07505 hypothetical protein; Provisional

Probab=90.33  E-value=0.34  Score=38.41  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=26.6

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeeccc
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHN   34 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~   34 (98)
                      ...+|.+-|+++|.++|++||++|.+|-+.
T Consensus       189 ~~~~G~~~~~~~i~~l~~~~~~~li~DEa~  218 (402)
T PRK07505        189 VYSMGGIAPVKELLRLQEKYGLFLYIDDAH  218 (402)
T ss_pred             ccccCCcCCHHHHHHHHHHcCCEEEEECcc
Confidence            345688889999999999999999999974

>PRK07568 aspartate aminotransferase; Provisional

Probab=89.87  E-value=0.58  Score=36.50  Aligned_cols=62  Identities=16%  Similarity=0.055  Sum_probs=37.5

Q ss_pred             ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCC-ccCc-cc-cccCccccCCCCCCC
Q psy2484           7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPL-QPGH-SV-SLPLGTWLNLPLSLP   69 (98)
Q Consensus         7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi-~~AD-S~-t~d~HKwL~vP~~~~   69 (98)
                      .+|.+=   ++++|.++|+++|+|+.+|.++.....-.+.  ....+ +..| .+ .-.+.|.+++| +.-
T Consensus       174 PtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~-G~R  243 (397)
T PRK07568        174 PTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSAC-GAR  243 (397)
T ss_pred             CCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCC-Ccc
Confidence            356543   5889999999999999999986543211111  11111 1122 22 23678999988 753

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=89.54  E-value=0.4  Score=39.68  Aligned_cols=61  Identities=13%  Similarity=0.023  Sum_probs=35.2

Q ss_pred             ChHHHHHHHHHcCceEEeecccchhhh-----cCCC-C-CCCC-ccCccccccCccccCCCCCCCeeEEec
Q psy2484          13 NVSLLQEICAKYNLWLHLRGHNLSSLA-----LNSH-S-PSPL-QPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus        13 ~l~~i~~ic~~~~lWlHVDga~~~al~-----~~~~-~-~~gi-~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      +++++++++++||+.+-+|...|.-.=     ++.+ . .+-+ .-||=+++...|.||=| +.+ +++=|
T Consensus       158 ~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGP-QaG-iI~Gk  226 (367)
T PF03841_consen  158 SLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGP-QAG-IIVGK  226 (367)
T ss_dssp             ---HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS--S-E-EEEEE
T ss_pred             cHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCC-CeE-EEEeC
Confidence            789999999999999999997655432     2222 2 2233 44999999999999999 654 44533

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK08363 alanine aminotransferase; Validated

Probab=89.52  E-value=0.63  Score=36.64  Aligned_cols=65  Identities=11%  Similarity=-0.018  Sum_probs=40.5

Q ss_pred             ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccCc-cc-cccCccccCCCCCCCeeEE
Q psy2484           7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPGH-SV-SLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~AD-S~-t~d~HKwL~vP~~~~~~ll   73 (98)
                      .+|.+=   .+++|.++|+++|+|+-+|.++... ...+.  ....+...+ -+ .-.+.|++++| +.-.-++
T Consensus       178 PtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~-~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~-GlRiG~~  249 (398)
T PRK08363        178 PTGALYEKKTLKEILDIAGEHDLPVISDEIYDLM-TYEGKHVSPGSLTKDVPVIVMNGLSKVYFAT-GWRLGYI  249 (398)
T ss_pred             CCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhh-ccCCcccCHHHcCcCCcEEEEecchhccCCc-cceEEEE
Confidence            356553   4899999999999999999986532 22221  111122222 23 24789999999 8644333

>PRK07682 hypothetical protein; Validated

Probab=89.40  E-value=0.43  Score=37.16  Aligned_cols=55  Identities=7%  Similarity=-0.048  Sum_probs=34.6

Q ss_pred             CChHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCCccCccccccCccccCCCCC
Q psy2484          12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPLQPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus        12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi~~ADS~t~d~HKwL~vP~~   67 (98)
                      +.+++|.++|++|++|+.+|-++.....-++.    .+.+...-.=+.-...|.+++| +
T Consensus       174 ~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G  232 (378)
T PRK07682        174 SELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMT-G  232 (378)
T ss_pred             HHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccCh-h
Confidence            46999999999999999999975532211111    1112111112344567999998 7

>PRK08912 hypothetical protein; Provisional

Probab=89.21  E-value=0.96  Score=35.42  Aligned_cols=60  Identities=13%  Similarity=0.104  Sum_probs=39.0

Q ss_pred             ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCC---C---CCCCccCccccccCccccCCCCCC
Q psy2484           7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSH---S---PSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~---~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      .||.+=   .+++|.++|++||+|+.+|.++..... .+.   .   ..+...-+=+...+.|.+++| +.
T Consensus       171 PtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-Gl  239 (387)
T PRK08912        171 PAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVF-DGRRHIPLMTLPGMRERTVKIGSAGKIFSLT-GW  239 (387)
T ss_pred             CcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhccc-CCCCCcChhhCCCccCceEEEeechhhccCc-Cc
Confidence            355543   478899999999999999998653221 211   1   222222234567789999999 74

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=89.11  E-value=0.62  Score=38.51  Aligned_cols=59  Identities=17%  Similarity=0.174  Sum_probs=43.9

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCCc--cCccccccCccccCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPLQ--PGHSVSLPLGTWLNLP   65 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi~--~ADS~t~d~HKwL~vP   65 (98)
                      +-|.+=||.+|.++++|||.||=||=+-+....=+.-+    ..|++  .-|-++-.+.|-||.-
T Consensus       183 MdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~  247 (388)
T COG0156         183 MDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSS  247 (388)
T ss_pred             CCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhccc
Confidence            45778899999999999999999998644333333322    23665  3389999999999954

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=89.01  E-value=0.79  Score=35.48  Aligned_cols=61  Identities=8%  Similarity=0.067  Sum_probs=39.4

Q ss_pred             cccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccCccccc-cCccccCCCCCC
Q psy2484           6 SLNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPGHSVSL-PLGTWLNLPLSL   68 (98)
Q Consensus         6 t~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~ADS~t~-d~HKwL~vP~~~   68 (98)
                      -.+|.+=+   +++|.++|++||+++=+|-+++.... .+.  .....+...-+.+ .+.|.++.| +.
T Consensus       147 NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~i~~~s~SK~~g~~-Gl  213 (350)
T TIGR03537       147 NPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYF-GEPPHSALEVGIENVLAFHSLSKRSGMT-GY  213 (350)
T ss_pred             CCcCcccCHHHHHHHHHHHHHcCcEEEEecccccccc-CCCCCchhhcCcCCEEEEeecccccCCc-cc
Confidence            34666556   89999999999999999998653321 211  1111111123554 789999999 74

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=88.93  E-value=0.58  Score=40.12  Aligned_cols=52  Identities=17%  Similarity=0.125  Sum_probs=42.6

Q ss_pred             CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484          12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus        12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      .+|.+|++|-.++|--+=.||++..|++--.+  .|-=-+|=+-+|+||.|-+|
T Consensus       221 ~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~r--PGd~G~DV~HlNLHKTF~iP  272 (496)
T COG1003         221 EDIREICEIVHEAGGQVYYDGANLNAIVGLAR--PGDMGFDVVHLNLHKTFCIP  272 (496)
T ss_pred             hhHHHHHHHHHHcCCEEEecCcchhhhhcccc--ccccccceEEeecccccccC
Confidence            46889999999999999999998877764333  35555899999999999985

>PRK07908 hypothetical protein; Provisional

Probab=88.78  E-value=1.2  Score=34.46  Aligned_cols=61  Identities=11%  Similarity=-0.003  Sum_probs=41.9

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-CCCCCccCccccc-cCccccCCCCCC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-SPSPLQPGHSVSL-PLGTWLNLPLSL   68 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~~gi~~ADS~t~-d~HKwL~vP~~~   68 (98)
                      ...||.+=+.++|.++|++ +.|+-+|.++.-.. ..+. .+...+.-+.+.+ .++|.+++| +.
T Consensus       149 ~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~-~~~~~~l~~~~~~~~i~i~S~SK~~~l~-Gl  211 (349)
T PRK07908        149 TNPTSVLHPAEQLLALRRP-GRILVVDEAFADAV-PGEPESLAGDDLPGVLVLRSLTKTWSLA-GL  211 (349)
T ss_pred             CCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhc-cCCccccccccCCCEEEEeecccccCCc-cc
Confidence            3457888889999999975 88999999764321 1111 2222334467777 899999988 76

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=88.77  E-value=0.59  Score=36.89  Aligned_cols=67  Identities=9%  Similarity=-0.007  Sum_probs=40.3

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCcc-Cc--cccccCccccCCCCCCCeeEEe
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQP-GH--SVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~-AD--S~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      .+|..   +++++|.++|++||+|+.+|.++.-...-.+....-.+. .|  -+.-...|-+++| +.-.-.++
T Consensus       178 PtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-GlRvG~~v  250 (391)
T PRK07309        178 PTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMT-GWRIGLIF  250 (391)
T ss_pred             CCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCc-cceeEEEE
Confidence            45553   569999999999999999999865322111111111111 12  2344788999999 86444444

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=88.70  E-value=1  Score=35.34  Aligned_cols=71  Identities=10%  Similarity=0.027  Sum_probs=40.5

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP   78 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~   78 (98)
                      +...|..-++.+|.++|+++|+++=-|++ ..++. ...........+=.+.+.+.|.+..  +-+.+++.++++
T Consensus       120 ~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~-~~g~~~G~~gd~~~fSf~~~K~i~~--geGG~v~~~~~~  191 (363)
T PF01041_consen  120 VHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGAR-YKGRPVGSFGDIAIFSFHPTKIITT--GEGGAVVTNDPE  191 (363)
T ss_dssp             E-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-E-ETTEETTSSSSEEEEESSTTSSS-S--SS-EEEEESTHH
T ss_pred             ecCCCCcccHHHHHHHHHHcCCcEEEccccccCce-eCCEeccCCCCceEecCCCCCCCcC--CCCeeEEecHHH
Confidence            34578888999999999999999999996 33322 2222233333344455555688844  467788887743

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=88.37  E-value=0.42  Score=37.97  Aligned_cols=26  Identities=19%  Similarity=0.252  Sum_probs=22.2

Q ss_pred             cCCChHHHHHHHHHcCceEEeecccc
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHNL   35 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~~   35 (98)
                      ..+.+++|+++|++||+|+-+|-...
T Consensus       203 ~~~~l~~l~~l~~~~g~~lI~DEv~~  228 (403)
T PRK05093        203 TPEFLQGLRELCDQHNALLIFDEVQT  228 (403)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEechhh
Confidence            34569999999999999999999643

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=88.23  E-value=0.7  Score=38.09  Aligned_cols=70  Identities=9%  Similarity=0.002  Sum_probs=52.8

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP   78 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~   78 (98)
                      ..|..=++++|.+||++||+|+=-|++=+.+......+.-.+..+=++.+.+.|-+..-  -+.+++.++.+
T Consensus       131 l~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittg--EGGav~tnd~e  200 (374)
T COG0399         131 LAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTG--EGGAVVTNDEE  200 (374)
T ss_pred             hccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCCcccc--CceEEEeCCHH
Confidence            35677799999999999999999999633332334445666777888999999988776  56777777643

>PRK07324 transaminase; Validated

Probab=87.96  E-value=0.61  Score=36.71  Aligned_cols=60  Identities=15%  Similarity=0.185  Sum_probs=36.5

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCc-ccc-ccCccccCCCCCC
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGH-SVS-LPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~AD-S~t-~d~HKwL~vP~~~   68 (98)
                      .||.+=+   +++|.++|++||+|+.+|.++.. +..........+..+ .|. -.+.|.+++| +.
T Consensus       165 PtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~-l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~-G~  229 (373)
T PRK07324        165 PTGALMDRAYLEEIVEIARSVDAYVLSDEVYRP-LDEDGSTPSIADLYEKGISTNSMSKTYSLP-GI  229 (373)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEEEEccccc-cccCCCCCChhhccCCEEEEecchhhcCCc-cc
Confidence            4565555   89999999999999999997532 111111001111111 122 3677999998 75

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=87.62  E-value=0.61  Score=36.91  Aligned_cols=53  Identities=21%  Similarity=0.146  Sum_probs=34.2

Q ss_pred             ccCCC----hHHHHHHHHHcCceEEeeccc-chhhhcCCC---CCCCCccCccccccCccccCCC
Q psy2484           9 GHVDN----VSLLQEICAKYNLWLHLRGHN-LSSLALNSH---SPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         9 Ga~D~----l~~i~~ic~~~~lWlHVDga~-~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      |.+=|    |++|+++|++||+|+-+|-.. |... .-+.   ...++ ..|-+++  .|-|+..
T Consensus       200 G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~-~G~~~~~~~~~~-~~di~~~--gK~l~~g  260 (401)
T TIGR01885       200 GVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGR-TGKLLCVDHENV-KPDIVLL--GKALSGG  260 (401)
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc-cchhhHHhhcCC-CCCEEEe--eccccCC
Confidence            55555    999999999999999999962 2111 0000   12233 4677765  5988754

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=87.24  E-value=0.54  Score=37.47  Aligned_cols=50  Identities=12%  Similarity=0.038  Sum_probs=33.5

Q ss_pred             cCCChHHHHHHHHHcCceEEeeccc-chhhhcCCC---CCCCCccCccccccCccccC
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHN-LSSLALNSH---SPSPLQPGHSVSLPLGTWLN   63 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~-~~al~~~~~---~~~gi~~ADS~t~d~HKwL~   63 (98)
                      ..+.|++|+++|++||+||-+|-.. |... ..+.   ...|+ ..|.+++  .|-|+
T Consensus       198 ~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr-~G~~~a~~~~gv-~pDi~t~--~K~lg  251 (397)
T TIGR03246       198 DPAFLKGLRELCDRHNALLIFDEVQTGVGR-TGELYAYMHYGV-TPDILTS--AKALG  251 (397)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEechhhcCCc-cccchhhhhcCC-CCCEEEe--ehhhh
Confidence            3467999999999999999999952 2221 1111   12255 4787764  78886

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=86.92  E-value=0.46  Score=37.31  Aligned_cols=24  Identities=17%  Similarity=0.284  Sum_probs=21.8

Q ss_pred             CCChHHHHHHHHHcCceEEeeccc
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGHN   34 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga~   34 (98)
                      -+.+++|+++|++||+||-+|-..
T Consensus       195 ~~~l~~l~~l~~~~g~~lI~DEv~  218 (389)
T PRK01278        195 DEFLKGLRQLCDENGLLLIFDEVQ  218 (389)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccc
Confidence            468999999999999999999963

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=86.78  E-value=0.76  Score=37.23  Aligned_cols=30  Identities=13%  Similarity=0.063  Sum_probs=24.7

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccch
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLS   36 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~   36 (98)
                      -||.+=+   +++|.++|+++|+|+.+|.++..
T Consensus       202 PtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~  234 (430)
T PLN00145        202 PCGSVYSYEHLAKIAETARKLGILVIADEVYDH  234 (430)
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCEEEEeccchh
Confidence            4666666   88889999999999999998643

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=86.64  E-value=0.62  Score=36.25  Aligned_cols=52  Identities=13%  Similarity=0.101  Sum_probs=32.6

Q ss_pred             cCCChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCC
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      ..+.+++|+++|++||+++-+|-...+.-...+.   ...++ ..|-++  ..|.|+ +
T Consensus       186 ~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~-~~di~t--~sK~l~-~  240 (377)
T PRK02936        186 DPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGL-DPDIVT--VAKGLG-N  240 (377)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCC-CCcEEE--Eccccc-C
Confidence            3455999999999999999999963211010000   01233 246444  699998 5

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=85.96  E-value=0.88  Score=35.78  Aligned_cols=55  Identities=15%  Similarity=0.119  Sum_probs=34.6

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCC
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      +|.+-|    |++|+++|++||+||=+|....+.......   ...|+ .+|=+++  .|||+--
T Consensus       200 ~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~-~~D~~~~--~K~l~gg  261 (401)
T PRK00854        200 AGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGI-EADVTLI--GKALSGG  261 (401)
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCC-CCCEEEe--cccccCC
Confidence            455554    999999999999999999964321111110   11233 3565555  5999854

>PLN00175 aminotransferase family protein; Provisional

Probab=85.37  E-value=0.72  Score=37.03  Aligned_cols=60  Identities=15%  Similarity=0.224  Sum_probs=37.3

Q ss_pred             cccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC-C---CCCCccCccc-cccCccccCCCCCCC
Q psy2484           8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S---PSPLQPGHSV-SLPLGTWLNLPLSLP   69 (98)
Q Consensus         8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~---~~gi~~ADS~-t~d~HKwL~vP~~~~   69 (98)
                      +|.+   +.+++|.++|++|++|+.+|.++.....-.+. .   +.+.. -..| ...+.|.+++| +.-
T Consensus       200 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~-~~vi~i~SfSK~~~~~-G~R  267 (413)
T PLN00175        200 TGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMY-ERTVTMNSLGKTFSLT-GWK  267 (413)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCc-CcEEEEecchhhccCc-chh
Confidence            4554   56888999999999999999986433221111 1   22211 1122 24678999998 753

>PLN02624 ornithine-delta-aminotransferase

Probab=84.88  E-value=0.97  Score=37.40  Aligned_cols=48  Identities=19%  Similarity=0.165  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHcCceEEeeccc-chhhh---cCCCCCCCCccCccccccCccccCCC
Q psy2484          14 VSLLQEICAKYNLWLHLRGHN-LSSLA---LNSHSPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus        14 l~~i~~ic~~~~lWlHVDga~-~~al~---~~~~~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      |++|+++|++||++|.+|-.. |....   +.. ...++ ..|-+++  .|-|+..
T Consensus       247 L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~-~~~~i-~pDiv~l--sK~lggG  298 (474)
T PLN02624        247 LKAVRELCSKHNVLMIADEIQTGLARTGKMLAC-DWEEV-RPDVVIL--GKALGGG  298 (474)
T ss_pred             HHHHHHHHHHcCCEEEEeccccCcCcCcchhhH-HhcCC-CCCEEEe--cccccCC
Confidence            999999999999999999953 22110   100 12344 4676665  7998876

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=84.35  E-value=0.81  Score=36.07  Aligned_cols=60  Identities=10%  Similarity=0.009  Sum_probs=37.6

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccC-cc-ccccCccccCCCCCC
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPG-HS-VSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~A-DS-~t~d~HKwL~vP~~~   68 (98)
                      -||.+   +.+++|.++|+++|+|+.+|.++.-... .+.   .+..+..- .- +.-.+.|-+++| +.
T Consensus       180 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~-Gl  247 (401)
T TIGR01264       180 PCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVF-SGATFEPLASLSSTVPILSCGGLAKRWLVP-GW  247 (401)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhcc-CCcccccHHHcCCCCcEEEEccCcccCCCc-cc
Confidence            35555   5689999999999999999998653321 211   11112111 12 245678988999 75

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK12414 putative aminotransferase; Provisional

Probab=84.32  E-value=0.74  Score=36.25  Aligned_cols=62  Identities=8%  Similarity=0.052  Sum_probs=38.0

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCc-cCc-c-ccccCccccCCCCCCC
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQ-PGH-S-VSLPLGTWLNLPLSLP   69 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~-~AD-S-~t~d~HKwL~vP~~~~   69 (98)
                      .||.+   +++++|.++|++||+|+=+|.++.-...-.+.  .+.... ..| . +.-.+.|-+++| +.=
T Consensus       174 PTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p-GlR  243 (384)
T PRK12414        174 PSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVT-GWR  243 (384)
T ss_pred             CCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCc-cce
Confidence            45664   78999999999999999999986532211111  111111 011 1 233478999999 753

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=84.20  E-value=0.96  Score=35.17  Aligned_cols=59  Identities=17%  Similarity=0.209  Sum_probs=38.4

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCCccCccccccCccccCCCCCC
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      .||.+=+   +++|+++|+++++|+=+|.++.... ....    .+...+ -.=+.-.++|++++| +.
T Consensus       154 PTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~-G~  219 (356)
T PRK08056        154 PTGLLPERQLLQAIAERCKSLNIALILDEAFIDFI-PDETGFIPQLADNP-HLWVLRSLTKFYAIP-GL  219 (356)
T ss_pred             CCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccC-CcchHHHHHhccCC-CEEEEEechhhccCc-ch
Confidence            3566656   8889999999999999999753221 1110    111111 223457899999998 75

>PRK07337 aminotransferase; Validated

Probab=84.18  E-value=1.6  Score=34.11  Aligned_cols=60  Identities=10%  Similarity=0.100  Sum_probs=37.5

Q ss_pred             ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccC-cccc-ccCccccCCCCCC
Q psy2484           7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPG-HSVS-LPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~A-DS~t-~d~HKwL~vP~~~   68 (98)
                      .+|.+=   .+++|.++|+++++|+-+|-++.... ..+....-.+.. +-++ -.+.|.+++| +.
T Consensus       175 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~vi~~~S~SK~~~~~-G~  239 (388)
T PRK07337        175 PTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLS-YDAAPVSALSLGDDVITINSFSKYFNMT-GW  239 (388)
T ss_pred             CCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccc-cCCCCcChhhccCCEEEEEechhhcCCc-hh
Confidence            466644   47888899999999999998764322 121111111122 3343 3889999999 74

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=83.92  E-value=1.2  Score=35.31  Aligned_cols=48  Identities=13%  Similarity=0.064  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHcCceEEeecccc-hhh---hcCCCCCCCCccCccccccCccccCCC
Q psy2484          14 VSLLQEICAKYNLWLHLRGHNL-SSL---ALNSHSPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus        14 l~~i~~ic~~~~lWlHVDga~~-~al---~~~~~~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      +++|+++|++||+||-+|-+.. ...   ... ....++ ..|-++  ..|.++.+
T Consensus       209 l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~-~~~~~~-~pdi~~--~sK~lg~g  260 (396)
T PRK04073        209 LKAARELCKEENVLFIADEIQTGLGRTGKLFA-CDWDNV-TPDMYI--LGKALGGG  260 (396)
T ss_pred             HHHHHHHHHHcCCEEEEecchhCCCcCcHHHH-hhhcCC-CCCEEE--ecccccCC
Confidence            8999999999999999999632 211   000 011233 356555  47999887

>PRK05957 aspartate aminotransferase; Provisional

Probab=83.60  E-value=2.3  Score=33.52  Aligned_cols=30  Identities=17%  Similarity=0.223  Sum_probs=25.3

Q ss_pred             cccccCCC---hHHHHHHHHHcCceEEeecccc
Q psy2484           6 SLNGHVDN---VSLLQEICAKYNLWLHLRGHNL   35 (98)
Q Consensus         6 t~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~   35 (98)
                      ..||.+=|   +++|.++|++||+++=+|.++.
T Consensus       171 NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~  203 (389)
T PRK05957        171 NPTGVVYPEALLRAVNQICAEHGIYHISDEAYE  203 (389)
T ss_pred             CCCCcCcCHHHHHHHHHHHHHcCcEEEEeccch
Confidence            35777665   8899999999999999999865

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=83.57  E-value=1.6  Score=36.72  Aligned_cols=61  Identities=11%  Similarity=0.128  Sum_probs=40.4

Q ss_pred             ccCCC----hHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccC---CCCCCCeeEEe
Q psy2484           9 GHVDN----VSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLN---LPLSLPSPART   74 (98)
Q Consensus         9 Ga~D~----l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll~   74 (98)
                      |.+-|    +++|+++|++||+.|-+|=. .|..+.-.-.  ...|++ +|=  +-..|-|+   +|  .++++..
T Consensus       274 G~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~-PDi--vtlgK~lggG~~P--igAv~~~  344 (504)
T PLN02760        274 GVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIK-PDL--VSLAKALSSAYMP--IGAVLVS  344 (504)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCC-CcE--EEecccccCCccc--cceEeec
Confidence            55667    99999999999999999984 3443322211  234664 884  44589996   47  3444444

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=83.53  E-value=2.6  Score=32.82  Aligned_cols=60  Identities=15%  Similarity=0.066  Sum_probs=36.5

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccC-c--cccccCccccCCCCCC
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPG-H--SVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~A-D--S~t~d~HKwL~vP~~~   68 (98)
                      -+|..=+   +.+|.++|++||+|+-+|-++.-... .+.   .+..+... +  =..-.+.|.+++| +.
T Consensus       176 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~-~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~-Gl  244 (383)
T TIGR03540       176 PTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITF-DGYKAPSFLEVDGAKDVGIEFHSLSKTYNMT-GW  244 (383)
T ss_pred             CcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhcc-CCCCCcCcccCCCcccCEEEEEecccccCCc-cc
Confidence            3555545   78999999999999999998653221 211   11111111 1  1234566999999 74

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=83.44  E-value=1.9  Score=38.39  Aligned_cols=67  Identities=12%  Similarity=0.036  Sum_probs=48.9

Q ss_pred             cccccCCChHHHHHHHHHcCceE-EeecccchhhhcCC-CC----CCCCccCccc---cccCccccCCCCCCCeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWL-HLRGHNLSSLALNS-HS----PSPLQPGHSV---SLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWl-HVDga~~~al~~~~-~~----~~gi~~ADS~---t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      |.-|.+=++++|+++|   |+-+ |||-|.|+-..+.+ .+    +.+...||-.   |-..||.|..- .-++.+-.|.
T Consensus       307 TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~al-TQaS~iHvk~  382 (713)
T PRK15399        307 TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAF-SQASLIHIKG  382 (713)
T ss_pred             CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhcccccc-chheeeeecC
Confidence            6678889999999999   5666 99998776654444 32    2333468988   99999999987 5566665554

>PRK09148 aminotransferase; Validated

Probab=83.08  E-value=1.6  Score=34.76  Aligned_cols=66  Identities=5%  Similarity=-0.075  Sum_probs=38.9

Q ss_pred             cccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccC-cc--ccccCccccCCCCCCCeeEEec
Q psy2484           8 NGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPG-HS--VSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         8 ~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~A-DS--~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ||.+=+   +++|.++|++||+|+-+|.+++-... .+.   .+..+... |-  +.-.+.|.+++| +.=.-++.-
T Consensus       178 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~-~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~p-GlR~G~~v~  252 (405)
T PRK09148        178 TAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYF-DGNPPPSVLQVPGAKDVTVEFTSMSKTFSMA-GWRMGFAVG  252 (405)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhc-CCCCCCChhhCCCccCcEEEEeccccccCCc-chheeeeeC
Confidence            444444   57888999999999999998654321 111   11112111 21  245678999999 753333333

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=82.90  E-value=0.91  Score=35.32  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=21.6

Q ss_pred             CCChHHHHHHHHHcCceEEeecccc
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGHNL   35 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga~~   35 (98)
                      .+.+++|+++|++||+||.+|-...
T Consensus       202 ~~~l~~l~~l~~~~~~~lI~DE~~~  226 (396)
T PRK02627        202 KEYLQALRELCDENGILLILDEVQT  226 (396)
T ss_pred             HHHHHHHHHHHHHcCCEEEEechhc
Confidence            3459999999999999999999643

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=82.15  E-value=1  Score=35.89  Aligned_cols=56  Identities=16%  Similarity=0.100  Sum_probs=35.7

Q ss_pred             CCChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCc-cCccc-cccCccccCCCCCC
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQ-PGHSV-SLPLGTWLNLPLSL   68 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~-~ADS~-t~d~HKwL~vP~~~   68 (98)
                      .+.+++|.++|++||+|+.+|.++.... ....   .+..+. ..+.+ .-.+-|.+++| +.
T Consensus       196 ~~~~~~l~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p-Gl  256 (412)
T PTZ00433        196 RKHVEDIIRLCEELRLPLISDEIYAGMV-FNGATFTSVADFDTTVPRVILGGTAKNLVVP-GW  256 (412)
T ss_pred             HHHHHHHHHHHHHcCCeEEEeccccccc-cCCCCccchhhccCCCceEEEccchhhcCCC-Ce
Confidence            4568899999999999999999865322 1211   111111 11233 34678999999 76

>PRK07683 aminotransferase A; Validated

Probab=81.55  E-value=1.3  Score=34.88  Aligned_cols=66  Identities=8%  Similarity=0.029  Sum_probs=39.2

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC-CCCCC-ccC-ccc-cccCccccCCCCCCCeeEE
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-SPSPL-QPG-HSV-SLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~~gi-~~A-DS~-t~d~HKwL~vP~~~~~~ll   73 (98)
                      -||.+   +.+++|.++|+++|+|+.+|.++.-...-++. .+... +.. ..+ .-.+-|.+++| +.=.-.+
T Consensus       173 PtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~p-GlRiG~i  245 (387)
T PRK07683        173 PTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMT-GWRIGFL  245 (387)
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCc-cceeEEE
Confidence            35554   56899999999999999999976532211111 11111 001 112 34577999999 7533333

>PRK13578 ornithine decarboxylase; Provisional

Probab=81.21  E-value=0.97  Score=40.28  Aligned_cols=69  Identities=7%  Similarity=-0.044  Sum_probs=50.3

Q ss_pred             cccccCCChHHHHHH-HHHcCceEEeecccchhhhcCCC-C----CCCCccCc----cccccCccccCCCCCCCeeEEec
Q psy2484           6 SLNGHVDNVSLLQEI-CAKYNLWLHLRGHNLSSLALNSH-S----PSPLQPGH----SVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         6 t~~Ga~D~l~~i~~i-c~~~~lWlHVDga~~~al~~~~~-~----~~gi~~AD----S~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      |.-|.+=++++|+++ |++++ -||||-|.|+-+.+.+. +    ...-..||    =+|=..||.|..= ..++.+-.|
T Consensus       292 TYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~al-TQaS~LHvk  369 (720)
T PRK13578        292 TYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGF-SQTSQIHKK  369 (720)
T ss_pred             CCcceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhh-hhHhhhhcC
Confidence            667888999999998 68888 99999887766655442 1    22234577    7788899999886 555666555


Q ss_pred             C
Q psy2484          76 R   76 (98)
Q Consensus        76 ~   76 (98)
                      +
T Consensus       370 ~  370 (720)
T PRK13578        370 D  370 (720)
T ss_pred             C
Confidence            4

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=80.47  E-value=1.7  Score=38.71  Aligned_cols=68  Identities=9%  Similarity=0.056  Sum_probs=47.4

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-C-CCCC-ccC---c--cccccCccccCCCCCCCeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S-PSPL-QPG---H--SVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~-~~gi-~~A---D--S~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      |.-|.+=++++|.++|++++  +|||-|.|+-+.+.+. + ..++ ..|   |  =+|=..||.|..- ..++.+-.|.
T Consensus       307 TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~al-TQaS~LHvkg  382 (714)
T PRK15400        307 TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAF-SQASMIHVKG  382 (714)
T ss_pred             CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhcccch-hHHhHHHHcC
Confidence            66788999999999999998  7999887666544443 2 2333 224   3  5677899999886 4555554443

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=80.31  E-value=1.3  Score=34.45  Aligned_cols=55  Identities=13%  Similarity=0.008  Sum_probs=34.3

Q ss_pred             CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc------cCc--cccccCccccCCCCCC
Q psy2484          12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ------PGH--SVSLPLGTWLNLPLSL   68 (98)
Q Consensus        12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~------~AD--S~t~d~HKwL~vP~~~   68 (98)
                      +.+++|.++|+++|+|+-+|.++.... ..+.....+.      ..+  -+...+.|-+++| +.
T Consensus       162 ~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~-G~  224 (357)
T TIGR03539       162 DELRAIVAWARERGAVVASDECYLELG-WEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLA-GY  224 (357)
T ss_pred             HHHHHHHHHHHHcCeEEEEecchhhhc-cCCCCccceecccCCCccccEEEEeccccccCCC-ce
Confidence            457889999999999999999864321 1111111010      112  2334788999988 75

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.81
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.79
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.79
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.75
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.74
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.73
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.73
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.55
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.49
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.4
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.25
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.06
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.04
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	98.79
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.78
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	98.7
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	98.56
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	98.54
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	98.52
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	98.5
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	98.48
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	98.43
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	98.43
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	98.43
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	98.42
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	98.41
1iug_A	352	Putative aspartate aminotransferase; wild type, py	98.4
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	98.39
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	98.39
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	98.38
2fnu_A	375	Aminotransferase; protein-product complex, structu	98.38
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	98.37
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	98.37
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	98.36
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	98.35
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	98.34
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	98.34
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	98.31
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	98.3
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	98.3
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	98.3
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	98.29
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	98.29
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	98.26
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	98.25
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	98.23
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	98.23
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	98.22
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	98.21
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	98.21
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	98.2
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	98.19
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	98.19
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	98.17
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	98.15
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	98.15
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	98.15
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	98.14
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	98.14
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	98.14
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	98.13
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	98.12
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	98.12
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	98.12
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	98.12
1svv_A	359	Threonine aldolase; structural genomics, structura	98.11
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	98.08
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	98.07
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	98.07
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	98.07
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	98.06
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	98.05
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	98.03
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	98.02
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	98.01
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	98.01
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	98.0
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	97.99
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	97.9
1o69_A	394	Aminotransferase; structural genomics, unknown fun	97.89
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	97.85
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	97.82
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	97.79
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	97.78
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	97.77
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	97.76
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	97.74
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	97.74
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	97.73
3pj0_A	359	LMO0305 protein; structural genomics, joint center	97.71
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	97.71
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	97.7
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	97.69
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	97.66
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	97.65
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	97.62
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	97.62
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	97.61
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	97.59
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	97.59
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	97.57
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	97.55
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	97.46
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	97.45
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	97.44
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	97.44
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	97.44
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	97.43
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	97.38
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	97.34
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	97.34
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	97.32
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	97.31
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	97.27
3nra_A	407	Aspartate aminotransferase; structural genomics, j	97.25
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	97.24
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	97.23
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	97.23
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	97.22
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	97.2
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	97.16
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	97.12
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	97.11
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	97.1
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	97.09
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	97.07
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	97.06
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	97.05
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	97.04
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	97.04
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	97.04
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	97.0
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	97.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	96.99
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	96.98
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	96.96
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	96.9
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	96.86
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	96.83
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	96.83
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	96.82
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	96.8
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	96.78
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	96.75
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	96.71
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	96.65
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	96.53
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	96.51
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	96.5
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	96.5
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	96.5
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	96.44
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	96.41
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	96.35
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	96.35
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	96.33
3ele_A	398	Amino transferase; RER070207001803, structural gen	96.33
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	96.28
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	96.26
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	96.2
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	96.19
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	96.17
1vp4_A	425	Aminotransferase, putative; structural genomics, j	96.17
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	96.16
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	96.14
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	96.12
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	96.12
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	95.96
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	95.92
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	95.91
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	95.9
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	95.8
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	95.66
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	95.65
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	95.5
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	95.47
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	95.46
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	95.45
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	95.23
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	95.2
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	95.16
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	95.08
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	94.84
1z7d_A	433	Ornithine aminotransferase; structural genomics co	94.84
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	94.77
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	94.65
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	94.6
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	94.58
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	94.5
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	93.49
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	94.39
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	94.27
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	93.97
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	93.85
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	93.63
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	93.59
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	93.58
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	93.4
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	93.24
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	93.1
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	93.07
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	92.91
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	92.87
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	92.55
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	92.47
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	92.38
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	92.38
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	92.23
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	91.89
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	91.6
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	91.35
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	91.25
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	91.22
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	91.18
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	91.1
3rq1_A	418	Aminotransferase class I and II; structural genomi	91.01
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	90.54
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	90.3
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	89.45
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	88.77
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	88.72
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	88.56
3hmu_A	472	Aminotransferase, class III; structural genomics,	88.39
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	86.21
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	84.21
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	82.05

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.81  E-value=1.1e-20  Score=149.69  Aligned_cols=74  Identities=18%  Similarity=0.311  Sum_probs=63.1

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccch-hhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLS-SLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~-al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      |+|+|.+|++|||++|+++|++||+|+|||++.++ ++..++.  ...|++++||+++|+||||++|++++. +++|+
T Consensus       248 ~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~-l~~~~  324 (481)
T 4e1o_A          248 TLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTG-FWVKD  324 (481)
T ss_dssp             EBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEE-EEESB
T ss_pred             ecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEE-EEEeC
Confidence            68999999999999999999999999999998554 4555555  467999999999999999999987764 45554

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.79  E-value=4.4e-20  Score=146.62  Aligned_cols=75  Identities=13%  Similarity=0.228  Sum_probs=63.5

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchh-hhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSS-LALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~a-l~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      |+|+|.+|.+||+++|+++|++||+|+|||++.++. +..++.  .+.|++++||+++|+||||+.|++++ +++.|+.
T Consensus       241 ~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g-~l~~~~~  318 (475)
T 3k40_A          241 TLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCS-AMWLKDP  318 (475)
T ss_dssp             EBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCE-EEEESSG
T ss_pred             EecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceE-EEEEeCH
Confidence            679999999999999999999999999999986554 444544  47899999999999999999998776 5555554

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.79  E-value=1e-19  Score=145.99  Aligned_cols=76  Identities=22%  Similarity=0.384  Sum_probs=64.6

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeeccc-chhhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHN-LSSLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP   78 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~-~~al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~   78 (98)
                      |+|++.+|.+|||++|++||++||+|+|||++. ++++.+++.  ++.|++.|||+++|+||||++|++++ +++.|++.
T Consensus       255 ~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g-~l~~~~~~  333 (511)
T 3vp6_A          255 TAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCS-AILVKEKG  333 (511)
T ss_dssp             EBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCE-EEEESSTT
T ss_pred             ecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeE-EEEEeCHH
Confidence            679999999999999999999999999999974 455556655  47899999999999999999997765 55666654

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.75  E-value=9.7e-19  Score=138.21  Aligned_cols=76  Identities=22%  Similarity=0.384  Sum_probs=63.7

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeeccc-chhhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHN-LSSLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP   78 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~-~~al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~   78 (98)
                      |+|++.+|.+||+++|+++|++||+|+|||++. ++++..++.  .+.|++.+||+++|+|||+++|++++ +++.|+++
T Consensus       252 ~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g-~l~~~~~~  330 (504)
T 2okj_A          252 TAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCS-AILVKEKG  330 (504)
T ss_dssp             CBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCE-EEEESSTT
T ss_pred             eCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceE-EEEEECHH
Confidence            689999999999999999999999999999984 455545554  46889999999999999999997665 55666543

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.74  E-value=1.2e-18  Score=136.55  Aligned_cols=75  Identities=16%  Similarity=0.309  Sum_probs=63.1

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccch-hhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLS-SLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~-al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      |+|++.+|++||+++|+++|++||+|+|||++.++ ++.+++.  .+.|++.+||+++|+|||+++|++++ +++.|++
T Consensus       242 ~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G-~l~~~~~  319 (486)
T 1js3_A          242 TLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCS-AMWVKRR  319 (486)
T ss_dssp             EBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCE-EEEESCH
T ss_pred             eCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceE-EEEEeCH
Confidence            57999999999999999999999999999998655 4455555  35789999999999999999997765 5555554

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.73  E-value=2.9e-18  Score=136.36  Aligned_cols=75  Identities=23%  Similarity=0.321  Sum_probs=63.3

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeeccc-chhhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHN-LSSLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~-~~al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      ++|++.+|.+||+++|+++|++||+|||||++. ++++.+++.  .+.|++.+||+++|+||||+.|++++ +++.|++
T Consensus       266 ~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G-~l~~~~~  343 (515)
T 2jis_A          266 TSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCS-ALLLQDT  343 (515)
T ss_dssp             EBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCE-EEEESCC
T ss_pred             eCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCee-EEEEeCh
Confidence            679999999999999999999999999999974 445545544  37899999999999999999997765 5566655

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.73  E-value=2.9e-18  Score=135.29  Aligned_cols=76  Identities=20%  Similarity=0.411  Sum_probs=63.1

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP   78 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~   78 (98)
                      |+|++.+|.+||+++|+++|++||+|||||++.++.....+.  ++.|++.+||+++|+||||++|++++ +++.|++.
T Consensus       265 ~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G-~l~~~~~~  342 (497)
T 2qma_A          265 TAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCG-ALLVNDKS  342 (497)
T ss_dssp             EBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSCE-EEEESCGG
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcceE-EEEEeCHH
Confidence            579999999999999999999999999999986555443334  36799999999999999999997665 55556544

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.55  E-value=4.9e-16  Score=126.66  Aligned_cols=76  Identities=13%  Similarity=0.038  Sum_probs=59.2

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-CCCCC--ccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-SPSPL--QPGHSVSLPLGTWLNLPLSLPSPARTQRVP   78 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~~gi--~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~   78 (98)
                      |+|++..|++|||++|++||++||+|+|||+|+|+-...... ..+++  +.|||++.|+||||++|+++ +++++|+.+
T Consensus       205 t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~-~~l~~rd~~  283 (450)
T 3bc8_A          205 TTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGG-AIIAGFNEP  283 (450)
T ss_dssp             ESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSC-EEEEESCHH
T ss_pred             ECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhcc-EEEEecCHH
Confidence            566677779999999999999999999999987764432222 22455  78999999999999999766 455666543

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.49  E-value=2.9e-14  Score=110.73  Aligned_cols=75  Identities=16%  Similarity=0.088  Sum_probs=59.5

Q ss_pred             CCcccccccCCChHHHHHHHHHc------CceEEeecccchhhh---cCCCCCC-CCccCccccccCccccCCCCCCCee
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKY------NLWLHLRGHNLSSLA---LNSHSPS-PLQPGHSVSLPLGTWLNLPLSLPSP   71 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~------~lWlHVDga~~~al~---~~~~~~~-gi~~ADS~t~d~HKwL~vP~~~~~~   71 (98)
                      +.|++.+|.+||+++|+++|++|      |+|+|||+++++...   .++.+.. .++.+||+++++|||++.|..++ +
T Consensus       194 ~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G-~  272 (452)
T 2dgk_A          194 TFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCG-W  272 (452)
T ss_dssp             BBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCE-E
T ss_pred             EcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeE-E
Confidence            67999999999999999999996      999999998665432   3332222 37789999999999999997765 5


Q ss_pred             EEecCC
Q psy2484          72 ARTQRV   77 (98)
Q Consensus        72 ll~r~~   77 (98)
                      ++.|++
T Consensus       273 ~~~~~~  278 (452)
T 2dgk_A          273 VIWRDE  278 (452)
T ss_dssp             EEESSG
T ss_pred             EEEcCH
Confidence            555554

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.40  E-value=2.4e-13  Score=108.55  Aligned_cols=75  Identities=15%  Similarity=0.103  Sum_probs=60.1

Q ss_pred             CCcccccccCCChHHHHHHHHHc------CceEEeecccchhh---hcCCCCC-CCCccCccccccCccccCCCCCCCee
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKY------NLWLHLRGHNLSSL---ALNSHSP-SPLQPGHSVSLPLGTWLNLPLSLPSP   71 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~------~lWlHVDga~~~al---~~~~~~~-~gi~~ADS~t~d~HKwL~vP~~~~~~   71 (98)
                      +.|++.+|.+||+++|+++|+++      |+|+|||++.++..   ..++.+. -.++.+||+++++|||++.|.+++ +
T Consensus       209 ~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G-~  287 (502)
T 3hbx_A          209 ILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIG-W  287 (502)
T ss_dssp             EBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCE-E
T ss_pred             ecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeE-E
Confidence            56899999999999999999999      99999999865432   3555432 247899999999999999997775 4


Q ss_pred             EEecCC
Q psy2484          72 ARTQRV   77 (98)
Q Consensus        72 ll~r~~   77 (98)
                      ++.|+.
T Consensus       288 ~~~~~~  293 (502)
T 3hbx_A          288 VIWRNK  293 (502)
T ss_dssp             EEESSG
T ss_pred             EEEeCH
Confidence            555543

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.25  E-value=1.2e-12  Score=102.69  Aligned_cols=73  Identities=12%  Similarity=0.075  Sum_probs=55.4

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccc-hhh-hcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNL-SSL-ALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~-~al-~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      +++++.+|.+||+++|+++|++||+|+|||++++ .+. ..+..  .+.+  .+|++++++|||++.|.+++ +++.|++
T Consensus       238 ~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~--~~D~~~~s~hK~~~~p~g~G-~l~~~~~  314 (456)
T 2z67_A          238 TLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY--RVDAVVSSSDKNLLTPIGGG-LVYSTDA  314 (456)
T ss_dssp             ESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS--CCSEEEEEHHHHHCCCSSCE-EEEESCH
T ss_pred             eCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCC--CCCEEEEcCCCCcCCCCCeE-EEEEcCH
Confidence            4567889999999999999999999999998744 222 22221  1333  79999999999999997765 5555543

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.06  E-value=1.8e-10  Score=90.83  Aligned_cols=73  Identities=14%  Similarity=0.021  Sum_probs=54.1

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchhhh---------cCCCCCCCCccCccccccCccccCCCCCCCeeE
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLA---------LNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPA   72 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~---------~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~l   72 (98)
                      +.+++.+|.++|+++|+++|++||+|||||+++++...         .++.. .....+|+++.++|||++.|+.++ ++
T Consensus       246 ~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~-~~~~g~d~~~~s~~K~l~~~~~~g-~~  323 (514)
T 3mad_A          246 SAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFD-FRLEGVTSVSADTHKYGYGAKGTS-VI  323 (514)
T ss_dssp             ETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCS-TTSTTCCEEEECTTTTTCCCSSCE-EE
T ss_pred             eCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccc-ccCCCCcEEEECchhccCCCCCeE-EE
Confidence            35667799999999999999999999999997543322         11121 123446999999999999997765 44


Q ss_pred             EecC
Q psy2484          73 RTQR   76 (98)
Q Consensus        73 l~r~   76 (98)
                      +.++
T Consensus       324 ~~~~  327 (514)
T 3mad_A          324 LYRR  327 (514)
T ss_dssp             EESS
T ss_pred             EEeC
Confidence            5554

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.04  E-value=6.8e-11  Score=92.35  Aligned_cols=73  Identities=19%  Similarity=0.094  Sum_probs=54.8

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchhhh----------cCCCCCCCCccCccccccCccccCCCCCCCee
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLA----------LNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSP   71 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~----------~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~   71 (98)
                      +.+++.+|.++|+++|+++|++||+|+|||++.++...          +++.. .....+|+++.+.|||++.|++++ +
T Consensus       213 ~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~-~~~~g~d~~~~s~~K~l~~~~~~g-~  290 (497)
T 3mc6_A          213 SAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLD-FRVPGVTSISCDTHKYGFAPKGSS-V  290 (497)
T ss_dssp             ETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCS-TTSTTCCEEEEETTTTTCCCSSCE-E
T ss_pred             ECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcccc-ccCCCCcEEEECchhhcCCCCCce-e
Confidence            45677899999999999999999999999998654332          11121 123347999999999999997765 5


Q ss_pred             EEecC
Q psy2484          72 ARTQR   76 (98)
Q Consensus        72 ll~r~   76 (98)
                      ++.++
T Consensus       291 ~~~~~  295 (497)
T 3mc6_A          291 IMYRN  295 (497)
T ss_dssp             EECSS
T ss_pred             EEecC
Confidence            55554

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=98.79  E-value=7.5e-09  Score=76.03  Aligned_cols=73  Identities=15%  Similarity=0.203  Sum_probs=53.3

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhh-cCCC---------CCC-CCccCccccccCccccCCCCCCCee
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLA-LNSH---------SPS-PLQPGHSVSLPLGTWLNLPLSLPSP   71 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~-~~~~---------~~~-gi~~ADS~t~d~HKwL~vP~~~~~~   71 (98)
                      .+++.+|.++|+++|+++|++||+|+++|.+.++... ....         ... .. .+|+++.++|||++.|..++ +
T Consensus       179 ~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g-~  256 (397)
T 3f9t_A          179 AGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSG-G  256 (397)
T ss_dssp             BSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCE-E
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCce-E
Confidence            3567899999999999999999999999997543322 1110         111 12 68999999999999886665 4


Q ss_pred             EEecCC
Q psy2484          72 ARTQRV   77 (98)
Q Consensus        72 ll~r~~   77 (98)
                      ++.+++
T Consensus       257 ~~~~~~  262 (397)
T 3f9t_A          257 ILFKDI  262 (397)
T ss_dssp             EEESSG
T ss_pred             EEEeCH
Confidence            555554

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=98.78  E-value=4.5e-10  Score=93.38  Aligned_cols=69  Identities=13%  Similarity=0.044  Sum_probs=51.8

Q ss_pred             ccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-CCCC--CccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484           9 GHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-SPSP--LQPGHSVSLPLGTWLNLPLSLPSPARTQRVP   78 (98)
Q Consensus         9 Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~~g--i~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~   78 (98)
                      +.+|||++|++||++||+|+|||.|+|+-+..... ..+.  ..+||.++.++|||+.+|++. .+++.|+++
T Consensus       230 ~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG-~ii~~~d~e  301 (501)
T 3hl2_A          230 RVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGG-AIIAGFNDS  301 (501)
T ss_dssp             BCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCSSC-EEEEESCHH
T ss_pred             cccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceeecCc-eEEEeCCHH
Confidence            47799999999999999999999987776533222 1111  236999999999999999663 344566543

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=98.70  E-value=1.3e-08  Score=79.93  Aligned_cols=58  Identities=19%  Similarity=0.225  Sum_probs=45.4

Q ss_pred             ccccC-CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCC
Q psy2484           7 LNGHV-DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPL   66 (98)
Q Consensus         7 ~~Ga~-D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~   66 (98)
                      .+|.+ +|+++|+++|++||+|+|+|++.+.... ...+. +-..+|.++.++||||+.|+
T Consensus       214 ~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~-g~~~~-~~~g~di~~~s~~K~~~~p~  272 (474)
T 1wyu_B          214 TLGLFERRILEISRLCKEAGVQLYYDGANLNAIM-GWARP-GDMGFDVVHLNLHKTFTVPH  272 (474)
T ss_dssp             TTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT-TTCCH-HHHTCSEEECCTTTTTCCCC
T ss_pred             CCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhc-cCCCc-ccCCCcEEEEeCccccccCC
Confidence            48988 8999999999999999999998654332 11111 22248999999999999996

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=98.56  E-value=7.2e-08  Score=75.68  Aligned_cols=72  Identities=14%  Similarity=0.039  Sum_probs=51.8

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc-cCccccccCccccCCCCCCCeeEEecCC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ-PGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~-~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      .+.+|.+.|+++|+++|++||+|++||.+.+..+.+.+......+ .+|.++.++|||++-+.++ ++++.+++
T Consensus       155 ~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~~S~~K~l~~~~g~-g~l~~~~~  227 (446)
T 2x3l_A          155 PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTMG-SVLYIHKN  227 (446)
T ss_dssp             SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEEECHHHHSSSCTTC-EEEEEETT
T ss_pred             CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEEEECCcccccccccc-EEEEEcCC
Confidence            455999999999999999999999999986653322221111111 3799999999999887565 45555544

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=98.54  E-value=4.4e-08  Score=73.04  Aligned_cols=66  Identities=15%  Similarity=0.144  Sum_probs=48.3

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeE
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPA   72 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~l   72 (98)
                      ..+.+|.+.|+++|+++|++||+|+++|.+.+.... + .... -..+|.++.++||||+-|.+++.++
T Consensus       147 ~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-~-~~~~-~~~~d~~~~s~~K~l~~~~g~g~~~  212 (411)
T 3nnk_A          147 GDTSTTMLQPLAELGEICRRYDALFYTDATASLGGN-P-LETD-VWGLDAVSAGMQKCLGGPSGTSPIT  212 (411)
T ss_dssp             EETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTB-C-CCTT-TTTCSEEECCSTTTTCCCSSEEEEE
T ss_pred             CCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCc-c-cchh-ccCCcEEEecCccccCCCCceEEEE
Confidence            456789999999999999999999999997433211 1 1111 1147999999999988886654333

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=98.52  E-value=1.2e-07  Score=69.97  Aligned_cols=67  Identities=9%  Similarity=0.017  Sum_probs=49.7

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      .+.+|.+.|+++|.++|++||+|+++|.+.+.... + ..+... .+|.++..+||||+.|.+++ +++.+
T Consensus       156 ~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-~-~~~~~~-~~di~~~s~sK~~~~~~g~G-~~~~~  222 (386)
T 2dr1_A          156 ETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGA-D-IKFDKW-GLDVVFSSSQKAFGVPPGLA-IGAFS  222 (386)
T ss_dssp             ETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTB-C-CCTTTT-TCSEEEEETTSTTCCCSSCE-EEEEC
T ss_pred             cCCcchhCCHHHHHHHHHHcCCeEEEEccccccCc-c-cccccc-CCcEEEEeccccccCCCceE-EEEEC
Confidence            45689999999999999999999999997543321 1 112222 47999999999999996654 44444

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=98.50  E-value=1e-07  Score=71.19  Aligned_cols=66  Identities=9%  Similarity=0.090  Sum_probs=48.2

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeE
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPA   72 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~l   72 (98)
                      ....+|.+.|+++|+++|++||+|+++|++...... + ..... ..+|.++.++||||+.|.+++.++
T Consensus       145 ~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-~-~~~~~-~~~d~~~~s~~K~l~g~~g~g~~~  210 (416)
T 3isl_A          145 GETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGC-E-VKVDE-WKIDAAIGGTQKCLSVPSGMAPIT  210 (416)
T ss_dssp             EETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTS-C-CCTTT-TTCSEEECCSSSTTCCCSSEEEEE
T ss_pred             cCCCCceecCHHHHHHHHHHcCCEEEEECCccccCC-C-cchhh-cCCCEEEecCccccCCCCCeEEEE
Confidence            345689999999999999999999999997432221 1 11111 238999999999988886655433

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=98.48  E-value=6e-08  Score=70.32  Aligned_cols=68  Identities=13%  Similarity=0.151  Sum_probs=49.3

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ....+|.+.|+++|.++|++||+|+++|.+.+... .+ ..+... .+|.++.+.|||++.|.+++ +++.+
T Consensus       133 ~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~-~~-~~~~~~-~~d~~~~s~~K~~~~~~g~G-~~~~~  200 (353)
T 2yrr_A          133 GETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGM-LP-FSMRAM-GVDYAFTGSQKCLSAPPGLA-PIAAS  200 (353)
T ss_dssp             EETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT-SC-CCHHHH-TCSEEECCTTSTTCCCSSCE-EEEEC
T ss_pred             cCCCcceecCHHHHHHHHHHcCCeEEEEcCccccc-cc-cccccc-CceEEEecCcccccCCCceE-EEEEC
Confidence            45568999999999999999999999999864322 11 111111 36999999999998775765 44444

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=98.43  E-value=9.9e-08  Score=69.63  Aligned_cols=60  Identities=15%  Similarity=0.243  Sum_probs=44.3

Q ss_pred             cccc---CCChHHHHHHHHHcCceEEeecccchh-hhcCCC--CCCCC-ccCccccccCccccCCCCC
Q psy2484           7 LNGH---VDNVSLLQEICAKYNLWLHLRGHNLSS-LALNSH--SPSPL-QPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus         7 ~~Ga---~D~l~~i~~ic~~~~lWlHVDga~~~a-l~~~~~--~~~gi-~~ADS~t~d~HKwL~vP~~   67 (98)
                      ++|.   .+++++|+++|++||+|+|+|++.+.. ......  ...++ ..+|.+++.+||| +.|.+
T Consensus       152 ~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G  218 (356)
T 1v72_A          152 EVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAA  218 (356)
T ss_dssp             TTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSC
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCc
Confidence            5888   889999999999999999999975432 211111  22233 3789999999999 77843

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=98.43  E-value=4.2e-07  Score=73.83  Aligned_cols=72  Identities=17%  Similarity=0.197  Sum_probs=52.2

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +|.++.|...|+++|++||++||+|||||++-.+.++.......-++.+|.++..+||+|+-| . +++++.++
T Consensus       209 ~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp-~-GG~i~~~~  280 (490)
T 2a7v_A          209 AGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA-R-SGLIFYRK  280 (490)
T ss_dssp             ECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSC-S-CEEEEEEC
T ss_pred             EcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccc-c-chheeecc
Confidence            356677878899999999999999999999743344333221122356999999999999888 3 35555554

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=98.43  E-value=1.6e-07  Score=68.93  Aligned_cols=67  Identities=10%  Similarity=-0.077  Sum_probs=48.2

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      ..+.+|.+.|+++|.++|++||+|+++|++...... + ..... ..+|.++.++||||+-|.+++.++.
T Consensus       136 ~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-~-~~~~~-~~~d~~~~s~~K~~~~~~g~g~~~~  202 (384)
T 3zrp_A          136 VETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAE-E-VKAEE-WNVDVYLTASQKALGSAAGLGLLLL  202 (384)
T ss_dssp             EETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTS-C-CCTTT-TTCSEEEEETTSTTCCCSSEEEEEE
T ss_pred             CCCCCceECcHHHHHHHHHhcCCEEEEECcccccCc-c-ccccc-cCCCEEEecCcccccCCCceEEEEE
Confidence            345689999999999999999999999997443221 1 11111 1479999999999986656554333

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=98.42  E-value=2.3e-07  Score=68.40  Aligned_cols=69  Identities=3%  Similarity=-0.056  Sum_probs=49.6

Q ss_pred             cccccccCCChHHHHHHHHHc--CceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           4 GSSLNGHVDNVSLLQEICAKY--NLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~--~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      ..+.+|.+.|+++|+++|++|  |+|+++|++...... + ..+... .+|.++.++|||++-|.+++ +++.++
T Consensus       146 ~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~-~-~~~~~~-~~d~~~~s~~K~~~~~~G~G-~~~~~~  216 (385)
T 2bkw_A          146 VDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE-E-FEFDEW-GVDFALTASQKAIGAPAGLS-ISLCSS  216 (385)
T ss_dssp             EETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTS-C-CCTTTT-TCSEEEEESSSTTCCCSCEE-EEEECH
T ss_pred             cCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCc-c-cccccc-CceEEEecCccccccCCcce-EEEEcH
Confidence            356689999999999999999  999999997543221 1 112222 37999999999998664764 444443

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=98.41  E-value=2.8e-07  Score=67.07  Aligned_cols=67  Identities=3%  Similarity=-0.069  Sum_probs=48.2

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      ..+.+|.+.|+++|+++|++||+|+++|.+.+.... + ..+.. ..+|.++..+|||++-|.+++.++.
T Consensus       140 ~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-~-~~~~~-~~~di~~~s~~K~~~~~~g~G~~~~  206 (366)
T 1m32_A          140 SETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI-P-MDIAA-LHIDYLISSANKCIQGVPGFAFVIA  206 (366)
T ss_dssp             EETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS-C-CCTTT-TTCSEEEEESSSTTCCCSSEEEEEE
T ss_pred             ccCCcceecCHHHHHHHHHHcCCEEEEECCccccCc-C-ccccc-cCccEEEecCcccccCCCceEEEEE
Confidence            345679999999999999999999999997543221 1 11111 1379999999999977756654433

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=98.40  E-value=2.1e-07  Score=67.81  Aligned_cols=67  Identities=9%  Similarity=-0.047  Sum_probs=49.0

Q ss_pred             cccccccCCChHHHHHHHHHc--CceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           4 GSSLNGHVDNVSLLQEICAKY--NLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~--~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      ..+.+|.+.|+++|.++|++|  |+|+++|.+.+.... + ...... .+|.++.++|||++.|.+++.+++
T Consensus       130 ~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-~-~~~~~~-~~d~~~~s~~K~~~~~~g~G~~~~  198 (352)
T 1iug_A          130 SETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVG-E-VALEAM-GVDAAASGSQKGLMCPPGLGFVAL  198 (352)
T ss_dssp             EETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTB-C-CCSGGG-TCSEEEEESSSTTCCCSCEEEEEE
T ss_pred             ecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCc-c-eecccc-CeeEEEecCcccccCCCceeEEEE
Confidence            356689999999999999999  999999997543211 1 111111 479999999999998866654443

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=98.39  E-value=1.4e-07  Score=68.79  Aligned_cols=63  Identities=13%  Similarity=0.060  Sum_probs=47.3

Q ss_pred             cccccccCCChHHHHHHHHHc-CceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCee
Q psy2484           4 GSSLNGHVDNVSLLQEICAKY-NLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSP   71 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~-~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~   71 (98)
                      .++.+|.+.|+++|+++|++| |+|+++|++..... .+ .   .++.+|.++.++|||++.|.+++.+
T Consensus       139 ~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~-~~-~---~~~~~d~~~~s~~K~~~~~~G~g~~  202 (362)
T 3ffr_A          139 NETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPY-PK-F---DWTKIDSVFFSVQKCFGLPAGLGVW  202 (362)
T ss_dssp             EETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTS-SC-C---CTTSCSEEEEETTSTTCCCSCCEEE
T ss_pred             CCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCC-cc-c---ChhHCcEEEEecccccCCCCceEEE
Confidence            356789999999999999999 99999999743221 11 1   1223899999999999955376543

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=98.39  E-value=2.8e-07  Score=68.44  Aligned_cols=68  Identities=9%  Similarity=0.088  Sum_probs=49.2

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ....+|.+.|+++|.++|++||+|+++|.+.+.... + ..+... .+|.++.++|||++-|.+++ +++.+
T Consensus       143 ~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~-~~~~~~-~~d~~~~s~sK~~~~~~g~G-~l~~~  210 (392)
T 2z9v_A          143 HDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGM-K-THPEDC-KADIYVTGPNKCLGAPPGLT-MMGVS  210 (392)
T ss_dssp             EEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTB-S-CCGGGG-TCSEEEECSSSTTCCCSCCE-EEEEC
T ss_pred             cCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCc-c-cccccc-cceEEEecCcccccCCCcee-EEEEC
Confidence            455689999999999999999999999997543211 1 111111 37999999999998765774 44443

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=98.38  E-value=7.6e-07  Score=66.88  Aligned_cols=67  Identities=12%  Similarity=0.077  Sum_probs=48.8

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      ....+|.+.|+++|+++|++||+|+++|.+.+.... + ...... .+|.++..+||+++.+ +++.+++.
T Consensus       172 ~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-~-~~~~~~-~~di~~~s~sK~~g~~-g~G~~~~~  238 (423)
T 3lvm_A          172 VNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL-P-IDLSQL-KVDLMSFSGHKIYGPK-GIGALYVR  238 (423)
T ss_dssp             BCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS-C-CCTTTS-CCSEEEEESTTTTSCS-SCEEEEEC
T ss_pred             CCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCC-C-cChhhc-CCCEEEechHHhcCCC-CeEEEEEe
Confidence            445789999999999999999999999997544322 1 111222 3799999999988765 76544443

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=98.38  E-value=4.6e-07  Score=66.72  Aligned_cols=67  Identities=12%  Similarity=0.066  Sum_probs=47.4

Q ss_pred             cccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           8 NGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         8 ~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +|.+.|+++|.++|++||+|+++|.+.+.........+......+..++.+|||++.  +++.+++.++
T Consensus       131 tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~~~--g~g~~~~~~~  197 (375)
T 2fnu_A          131 AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITT--AEGGAVVTND  197 (375)
T ss_dssp             GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC--SSCEEEEESC
T ss_pred             cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCccc--cCceEEEeCC
Confidence            799999999999999999999999975432211111122223477888999999965  5776655443

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=98.37  E-value=2.9e-07  Score=69.04  Aligned_cols=67  Identities=6%  Similarity=-0.160  Sum_probs=48.1

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC-CeeEE
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL-PSPAR   73 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~-~~~ll   73 (98)
                      ..+.+|.+.|+++|+++|++||+|+++|++.+.... + ..+... .+|.++..+||||+-+..+ +.++.
T Consensus       174 ~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~-~~~~~~-~~d~~~~s~~K~l~~g~~~~g~l~~  241 (416)
T 1qz9_A          174 VNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAV-P-VDLHQA-GADYAIGCTYKYLNGGPGSQAFVWV  241 (416)
T ss_dssp             BCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS-C-CCHHHH-TCSEEEECSSSTTCCCTTCCCEEEE
T ss_pred             cccCcccccCHHHHHHHHHHcCCEEEEEccccccCc-C-CChhhc-CCCEEEecCcccCCCCCCCeEEEEE
Confidence            345689999999999999999999999997653221 1 111111 3799999999998765466 54443

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=98.37  E-value=7.4e-07  Score=65.42  Aligned_cols=69  Identities=13%  Similarity=0.085  Sum_probs=50.3

Q ss_pred             cccccccCCChHHHHHHHHHcC--ceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYN--LWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~--lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      ....+|.+.|+++|.++|++||  +|+++|.+.+... .+ ..+... .+|.++..+||+++.| +++ +++.+++
T Consensus       148 ~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~-~~-~~~~~~-~~di~~~s~sK~~g~~-G~G-~~~~~~~  218 (384)
T 1eg5_A          148 ANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGK-IP-FSLEKL-EVDYASFSAHKFHGPK-GVG-ITYIRKG  218 (384)
T ss_dssp             BCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTT-SC-CCCTTT-CCSEEEEEGGGGTSCT-TCE-EEEECTT
T ss_pred             CCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCC-cc-cCchhc-CCCEEEecHHHhcCCC-ceE-EEEEcCC
Confidence            3456899999999999999999  9999999754221 11 122223 4899999999999877 754 4454443

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=98.36  E-value=7.6e-07  Score=68.32  Aligned_cols=69  Identities=13%  Similarity=0.050  Sum_probs=50.4

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchh-hhcCCCCCCCCccCccccccCccccCCCCC-CCeeEEecCC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSS-LALNSHSPSPLQPGHSVSLPLGTWLNLPLS-LPSPARTQRV   77 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~a-l~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-~~~~ll~r~~   77 (98)
                      +..+|.+.|+++|+++|++||+|+++|.+.+.. .....  .  -..+|.++..+|||++.|.. .+.+++.++.
T Consensus       150 ~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~--~--~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~  220 (412)
T 2cb1_A          150 ANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRP--L--AWGAHVVVESLTKWASGHGSVLGGAVLSRET  220 (412)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCG--G--GGTCSEEEEETTTTTTCSSCCCCEEEEECCC
T ss_pred             CCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCc--c--ccCCeEEEECCcccccCCCCcEEEEEEeccc
Confidence            455899999999999999999999999975433 21111  1  12489999999999999844 4555555533

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=98.35  E-value=4e-07  Score=67.03  Aligned_cols=66  Identities=17%  Similarity=0.079  Sum_probs=47.5

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      .+.+|.+.|+++|+++|++||+|+++|.+.+.... + .... -...|.++..+||||+-|.+++.++.
T Consensus       158 ~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~-~-~~~~-~~~~d~~~~s~sK~~~~~~g~g~~~~  223 (393)
T 3kgw_A          158 ESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGV-P-IYMD-QQGIDIMYSSSQKVLNAPPGISLISF  223 (393)
T ss_dssp             ETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTS-C-CCTT-TTTCCEEEEESSSTTCCCSSCEEEEE
T ss_pred             CCcchhhccHHHHHHHHHHcCCEEEEECCccccCc-c-cchh-hcCCCEEEecCcccccCCCceeEEEE
Confidence            45689999999999999999999999997442211 1 1111 12469999999999977757654443

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=98.34  E-value=4e-07  Score=67.79  Aligned_cols=67  Identities=9%  Similarity=-0.030  Sum_probs=49.8

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ...+|.+.|+++|+++|++||+|+++|.+.+... .+ ..+.. ..+|.++..+||||+.|..++ +++.+
T Consensus       169 ~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~-~~-~~~~~-~~~di~~~s~sK~l~~~~~~G-~l~~~  235 (393)
T 1vjo_A          169 ETSTGARQPLEGVGELCREFGTLLLVDTVTSLGG-VP-IFLDA-WGVDLAYSCSQKGLGCSPGAS-PFTMS  235 (393)
T ss_dssp             ETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTT-SC-CCTTT-TTCSEEECCSSSTTCSCSSCE-EEEEC
T ss_pred             CCCcceeccHHHHHHHHHHcCCEEEEECCccccC-cC-Ccccc-cCccEEEEcCcccccCCCceE-EEEEC
Confidence            4568999999999999999999999999865332 12 12222 257999999999999995454 44443

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=98.34  E-value=1.1e-06  Score=65.39  Aligned_cols=68  Identities=16%  Similarity=0.188  Sum_probs=49.0

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ++.|...++++|+++|++||+|+++|.+.+....-......+++.+|.++..+||||+-|.+  ++++.+
T Consensus       172 ~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g--G~~~~~  239 (405)
T 2vi8_A          172 AAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG--GMILCQ  239 (405)
T ss_dssp             SSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC--EEEEEC
T ss_pred             CCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC--eEEEEc
Confidence            56677779999999999999999999986533221122122345789888899999986635  455554

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=98.31  E-value=8.8e-07  Score=66.00  Aligned_cols=68  Identities=16%  Similarity=0.135  Sum_probs=46.9

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCcccccc--CccccCCCCCCCeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLP--LGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d--~HKwL~vP~~~~~~ll~r~   76 (98)
                      ..+|...|+++|.++|++||+|+++|.+.+...........  ..+|-+++.  .||+|+.+ +.+.+++.++
T Consensus       132 n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~--~~~d~~~~S~~~~K~l~~~-g~gg~~~~~~  201 (373)
T 3frk_A          132 HLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVG--SLGDAAGFSFYPAKNLGSL-GDGGAVVTND  201 (373)
T ss_dssp             CCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETT--SSSSEEEEECCTTSSSCCS-SSCEEEEESC
T ss_pred             CCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEecc--ccccEEEEeCcCCCccCcc-ceeEEEEeCC
Confidence            35889999999999999999999999975432222222222  124655555  77999884 4466666654

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=98.30  E-value=8e-07  Score=75.32  Aligned_cols=71  Identities=18%  Similarity=0.156  Sum_probs=51.6

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-C-CCCC--ccCcc------ccccCccccCCCCCCCeeEEec
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S-PSPL--QPGHS------VSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~-~~gi--~~ADS------~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      +.+|.+.|+++|+++|++||+|+|||++.++.+.+.+. + ...+  +.+|.      ++..+||+|+-| ..+++++.+
T Consensus       322 n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~-~~g~~i~~~  400 (755)
T 2vyc_A          322 TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-SQASYIHVR  400 (755)
T ss_dssp             CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCC-TTCEEEEEE
T ss_pred             CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCc-CCeeeeeec
Confidence            46899999999999999999999999986544333221 1 1121  23787      999999999988 545666655


Q ss_pred             CC
Q psy2484          76 RV   77 (98)
Q Consensus        76 ~~   77 (98)
                      +.
T Consensus       401 ~~  402 (755)
T 2vyc_A          401 EG  402 (755)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=98.30  E-value=9.9e-07  Score=69.84  Aligned_cols=71  Identities=20%  Similarity=0.174  Sum_probs=49.5

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +.++.+.+.|+++|++||+++|+|+++|++..+.++........++.+|-++...||||.-|-+  .+++.++
T Consensus       200 ~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg--G~i~~~~  270 (483)
T 1rv3_A          200 GTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA--GMIFYRR  270 (483)
T ss_dssp             CCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC--EEEEEEC
T ss_pred             eCCcCCCcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc--eEEEEcc
Confidence            3444457889999999999999999999974433332222112234689999999999988833  4555554

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=98.30  E-value=5.2e-07  Score=66.59  Aligned_cols=62  Identities=10%  Similarity=0.093  Sum_probs=45.9

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc--cCccccccCccccCCCCCCCee
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ--PGHSVSLPLGTWLNLPLSLPSP   71 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~--~ADS~t~d~HKwL~vP~~~~~~   71 (98)
                      .+.+|.+.|+++|+++|++||+|+++|++...... + .   .++  .+|.++..+||||+.|.+++.+
T Consensus       154 ~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~-~-~---~~~~~~~d~~~~s~~K~l~~~~G~g~~  217 (376)
T 3f0h_A          154 ETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLAD-P-F---NMNECGADVMITGSQKVLACPPGISVI  217 (376)
T ss_dssp             ETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTS-C-C---CHHHHTCSEEEEETTTTTCCCSSCEEE
T ss_pred             cCCcceecCHHHHHHHHHHcCCEEEEEcCccccCc-c-c---cccccCccEEEecCcccccCCCceEEE
Confidence            45689999999999999999999999986332211 1 1   122  2689999999999955476543

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=98.29  E-value=5.7e-07  Score=66.79  Aligned_cols=67  Identities=13%  Similarity=0.053  Sum_probs=48.0

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      .+.+|.+.|+++|+++|++||+|+++|++...... + ..+.. ..+|.++.++||||+-|.+++ +++.+
T Consensus       154 ~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~-~-~~~~~-~~~d~~~~s~sK~l~g~~G~G-~~~~~  220 (393)
T 2huf_A          154 DSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGA-P-MFMDR-WEIDAMYTGSQKVLGAPPGIT-PVSFS  220 (393)
T ss_dssp             ETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTB-C-CCTTT-TTCSEEECCSSSTTCCCSSCE-EEEEC
T ss_pred             CCCccccCCHHHHHHHHHHcCCEEEEEcccccCCC-C-cchhh-cCccEEEECCCcccccCCCeE-EEEEC
Confidence            45689999999999999999999999997432211 1 11221 147999999999987654774 44443

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=98.29  E-value=1.1e-06  Score=65.83  Aligned_cols=69  Identities=12%  Similarity=0.099  Sum_probs=49.3

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      ..+|.+.|+++|+++|++||+|+++|.+..............+...+.++++.||||+.+ . +.+++.++
T Consensus       152 n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~g-~-gg~~~~~~  220 (391)
T 3dr4_A          152 HLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITTG-E-GGMITTND  220 (391)
T ss_dssp             CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCCB-S-CEEEEESC
T ss_pred             CCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCcC-C-eEEEEECC
Confidence            467999999999999999999999999754333222222222334778888899999875 3 45656554

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=98.26  E-value=3.2e-07  Score=67.46  Aligned_cols=69  Identities=10%  Similarity=0.092  Sum_probs=49.8

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      ..+.+|.+.|+++|.++|++||+|+++|.+.+... .+ ..... ..+|.++.++||||+.|..++ +++.++
T Consensus       156 ~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~-~~-~~~~~-~~~di~~~s~sK~~~~~~~~G-~~~~~~  224 (371)
T 2e7j_A          156 PDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR-MP-VSLKE-IGADFIVGSGHKSMAASGPIG-VMGMKE  224 (371)
T ss_dssp             SCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTT-BC-CCHHH-HTCSEEEEEHHHHSSCCSSCE-EEEECT
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCeEEEECccccCC-CC-CChhh-cCCCEEEecCCcCCCCCCCcE-EEEEec
Confidence            34568999999999999999999999999754432 11 11111 137899999999999996554 444444

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=98.25  E-value=4.7e-07  Score=67.68  Aligned_cols=68  Identities=9%  Similarity=0.109  Sum_probs=48.3

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      ....+|.+.|+++|.++|++||+|+++|++.+.... + ..+... .+|.++.++|||++ | .++++++.++
T Consensus       174 ~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~-~~~~~~-~~d~~~~s~~K~~g-~-~~G~~~~~~~  241 (406)
T 3cai_A          174 ASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYR-L-LDIRET-DADVVTVNAHAWGG-P-PIGAMVFRDP  241 (406)
T ss_dssp             BCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTC-C-CCHHHH-CCSEEEEEGGGGTS-C-SCEEEEESCH
T ss_pred             CcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCC-C-CCchhc-CCCEEEeehhhhcC-C-CcCeEEEEeh
Confidence            456689999999999999999999999997543211 1 111111 37999999999987 7 4442555543

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=98.23  E-value=1.4e-06  Score=65.08  Aligned_cols=71  Identities=14%  Similarity=0.056  Sum_probs=47.1

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      ..+|...|+++|+++|++||+|+++|.+..................-++++++||+|+.+ +.+.+++.+++
T Consensus       131 ~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~K~l~~~-g~gg~~~~~~~  201 (367)
T 3nyt_A          131 SLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSAPLGCY-GDGGAIFTNDD  201 (367)
T ss_dssp             CGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTTSSSCCS-SCCEEEEESCH
T ss_pred             CCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCCCcCCCc-CceeEEEeCCH
Confidence            467999999999999999999999999744322222221111222333444479999995 45667776543

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=98.23  E-value=1.7e-06  Score=65.64  Aligned_cols=67  Identities=7%  Similarity=0.001  Sum_probs=49.4

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~   76 (98)
                      ...+|.+.|+++|+++|++||+|+++|.+.+.... ... . . ..+|.+...+||+++.| +.  +.+++.++
T Consensus       159 ~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~-~~~-~-~-~~~di~~~s~sK~~~~~-g~~~~G~~~~~~  227 (398)
T 2rfv_A          159 ANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYC-QQP-L-Q-LGADIVVHSVTKYINGH-GDVIGGIIVGKQ  227 (398)
T ss_dssp             BTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTT-CCG-G-G-GTCSEEEEETTTTTTCS-SCCCCEEEEECH
T ss_pred             CCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc-CCc-h-h-hCCcEEEEeCcccccCC-CCceEEEEEECH
Confidence            34579999999999999999999999997553322 111 1 1 13799999999999998 55  45555543

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=98.22  E-value=2.4e-06  Score=63.19  Aligned_cols=68  Identities=19%  Similarity=0.129  Sum_probs=48.9

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCc--cccCCCCCCCeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLG--TWLNLPLSLPSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~H--KwL~vP~~~~~~ll~r~   76 (98)
                      ..+|.+.|+++|+++|++||+|+++|.+.+...........  ..+|-++...|  |||+.+ +.+.+++.++
T Consensus       133 n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~--~~~d~~~~s~~~~K~l~~~-g~~g~~~~~~  202 (374)
T 3uwc_A          133 HYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVG--SWGQFACFSLHPLKNLNVW-SDAGVIITHS  202 (374)
T ss_dssp             CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--SSSSEEEEECSSSSSSCCS-SCCEEEEESC
T ss_pred             CCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeecc--ccccEEEEeCCCCCcCCcc-ceeEEEEeCC
Confidence            35789999999999999999999999975433222222111  22599999977  999885 4466666554

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=98.21  E-value=8.9e-07  Score=67.03  Aligned_cols=68  Identities=7%  Similarity=0.047  Sum_probs=49.4

Q ss_pred             CcccccccCCChHHHHHHHHHcC----------ceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeE
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYN----------LWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPA   72 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~----------lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~l   72 (98)
                      .....+|.+.|+++|.++|+++|          +|++||++.+... .+ ..+.. ..+|.++.++|||++ | .++ ++
T Consensus       183 ~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~-~~-~~~~~-~~~d~~~~s~~K~~g-~-~~G-~~  256 (432)
T 3a9z_A          183 LANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK-RR-VDVED-LGVDFLTIVGHKFYG-P-RIG-AL  256 (432)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT-SC-CCHHH-HCCSEEEEEGGGTTC-C-SCE-EE
T ss_pred             CcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCC-cc-cChhh-cCCCEEEEehhHhcC-C-cce-EE
Confidence            34567899999999999999999          9999999865432 11 11111 247999999999998 6 454 55


Q ss_pred             EecC
Q psy2484          73 RTQR   76 (98)
Q Consensus        73 l~r~   76 (98)
                      +.++
T Consensus       257 ~~~~  260 (432)
T 3a9z_A          257 YVRG  260 (432)
T ss_dssp             EETT
T ss_pred             EEcc
Confidence            5554

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=98.21  E-value=2e-06  Score=66.53  Aligned_cols=66  Identities=6%  Similarity=-0.130  Sum_probs=47.7

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccC-CCCCCCeeEE
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLN-LPLSLPSPAR   73 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~-vP~~~~~~ll   73 (98)
                      ...+|.+.|+++|.++|++||+|+++|++.+.... + ..++ -..+|.+++..||||+ -|.+++.+++
T Consensus       224 ~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~-~-~~~~-~~~~D~~~~s~~K~l~~gp~~~g~l~~  290 (465)
T 3e9k_A          224 HFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNV-E-LYLH-DWGVDFACWCSYKYLNAGAGGIAGAFI  290 (465)
T ss_dssp             CTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTS-C-CCHH-HHTCCEEEECSSSTTCCCTTCCCEEEE
T ss_pred             ccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCc-C-Cchh-hcCCCEEEECcccccccCCCceEEEEE
Confidence            45689999999999999999999999997443221 1 1111 1247999999999995 7744555444

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=98.20  E-value=1e-06  Score=64.87  Aligned_cols=68  Identities=7%  Similarity=0.051  Sum_probs=48.5

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ...+.+|.+.|+++|.++|++||+| ++|.+.+... .+ ..+... .+|.++.++|||++.+ +++.+++.+
T Consensus       146 ~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~-~~-~~~~~~-~~di~~~s~sK~~g~~-g~G~~~~~~  213 (382)
T 4eb5_A          146 HANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQ-IE-VDVEKI-GADMLTISSNDIYGPK-GVGALWIRK  213 (382)
T ss_dssp             SBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTT-BC-CCHHHH-TCSEEEEETGGGTCCS-SCEEEEEET
T ss_pred             ccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCC-cc-cCcccc-CCCEEEeehHHhcCCC-ceEEEEEcc
Confidence            3456689999999999999999999 9999765321 11 111111 4799999999998865 776444433

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=98.19  E-value=1.9e-06  Score=65.61  Aligned_cols=67  Identities=9%  Similarity=-0.020  Sum_probs=49.7

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~   76 (98)
                      ...+|.+.|+++|+++|++||+|+++|.+........ . .  -..+|.++..+||+++.| +.  +.+++.++
T Consensus       160 ~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~-~-~--~~~~d~~~~S~sK~~~~~-~~~~~G~l~~~~  228 (398)
T 1gc0_A          160 ANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR-P-L--ELGADLVVHSATKYLSGH-GDITAGIVVGSQ  228 (398)
T ss_dssp             CTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCC-G-G--GGTCSEEEEETTTTTTCS-SSCCCEEEEECH
T ss_pred             CCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCC-c-h--hhCceEEEECCccccCCC-CCCeEEEEEECh
Confidence            3457999999999999999999999999754433211 1 1  124799999999999999 43  45555553

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=98.19  E-value=9.9e-07  Score=64.34  Aligned_cols=69  Identities=9%  Similarity=0.028  Sum_probs=48.7

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      ...+.+|.+.|+++|.++|++||+ +++|++.+.... + .... -..+|.++.++|||++.+ +++.+++.++
T Consensus       146 ~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~-~-~~~~-~~~~d~~~~s~~K~~g~~-g~g~~~~~~~  214 (382)
T 4hvk_A          146 HANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQI-E-VDVE-KIGADMLTISSNDIYGPK-GVGALWIRKE  214 (382)
T ss_dssp             SBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTB-C-CCHH-HHTCSEEEEESGGGTSCT-TCEEEEEETT
T ss_pred             CCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCC-C-CCch-hcCCCEEEEeHHHhcCCC-ceEEEEEcCc
Confidence            345668999999999999999999 999996432211 1 0011 014799999999998865 7765554443

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=98.17  E-value=1.5e-06  Score=64.63  Aligned_cols=67  Identities=13%  Similarity=0.098  Sum_probs=47.8

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      .+.+|.+.|+++|.++|++||+|+++|.+.+... .+ ..+... .+|.++.+.|||++-|.+++ +++.+
T Consensus       153 ~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~-~~-~~~~~~-~~d~~~~s~~K~~~~~~g~g-~~~~~  219 (396)
T 2ch1_A          153 DSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCG-VP-FYMDKW-EIDAVYTGAQKVLGAPPGIT-PISIS  219 (396)
T ss_dssp             ETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT-BC-CCTTTT-TCCEEECCCC-CCCCCSSCE-EEEEC
T ss_pred             CCCCceecCHHHHHHHHHHcCCEEEEEccccccC-Cc-cchhhc-CcCEEEEcCCccccCCCCeE-EEEEC
Confidence            4568999999999999999999999999865321 11 112211 36888999999999876775 44443

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=98.15  E-value=4.2e-06  Score=62.32  Aligned_cols=69  Identities=17%  Similarity=0.169  Sum_probs=49.7

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      +++.|...|+++|.++|++||+|+++|.+...++.........++.+|-++..+||||+-+ .. ++++.+
T Consensus       171 ~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~-~~-G~~~~~  239 (407)
T 2dkj_A          171 ASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGP-RG-GLILSN  239 (407)
T ss_dssp             CSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCC-SC-EEEEES
T ss_pred             ccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCC-Cc-eEEEEC
Confidence            4566788899999999999999999999865533322221122345899999999999766 33 455555

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=98.15  E-value=4.6e-06  Score=64.55  Aligned_cols=65  Identities=9%  Similarity=0.088  Sum_probs=48.7

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeeccc-chhhhcCCCCCCCCccCccccccCccccCCCCC-CCeeEEe
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHN-LSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS-LPSPART   74 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~-~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-~~~~ll~   74 (98)
                      ..+|.+.|+++|+++|++||+|++||++. +.....  ... + ..+|.++..+||||+.|.. .+.+++.
T Consensus       155 n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~--~~~-~-~~~Di~~~s~~K~l~~~g~~~G~~~~~  221 (421)
T 2ctz_A          155 NPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLL--RPL-A-WGAALVTHSLTKWVGGHGAVIAGAIVD  221 (421)
T ss_dssp             TTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSC--CGG-G-GTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred             CCCCcccCHHHHHHHHHHcCCEEEEECCcccccccC--Ccc-c-cCCeEEEECCcccccCCCCcEEEEEEe
Confidence            45799999999999999999999999987 544311  111 1 2489999999999999832 4555554

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=98.15  E-value=6.2e-06  Score=61.51  Aligned_cols=69  Identities=17%  Similarity=0.172  Sum_probs=48.3

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      ++.|...|+++|+++|++||+|+++|.+.+............++.+|-++..+||+|+-|.  +++++.++
T Consensus       178 ~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~--gg~~~~~~  246 (420)
T 3gbx_A          178 SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPR--GGLILAKG  246 (420)
T ss_dssp             TTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCS--CEEEEESS
T ss_pred             CccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCC--ceEEEEcC
Confidence            4557788999999999999999999997433332222211223458999999999997563  35555554

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=98.14  E-value=1.3e-06  Score=64.98  Aligned_cols=67  Identities=4%  Similarity=-0.118  Sum_probs=47.7

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ....+|.+.|+++|.++|++||+|+++|++.+.... + ...... .+|.++..+||.++.+ +++ +++.+
T Consensus       178 ~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-~-~~~~~~-~~di~~~s~sK~~~~~-g~G-~~~~~  244 (420)
T 1t3i_A          178 ISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHY-P-LDVQLI-DCDWLVASGHKMCAPT-GIG-FLYGK  244 (420)
T ss_dssp             BCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTS-C-CCHHHH-TCSEEEEEGGGTTSCT-TCE-EEEEC
T ss_pred             CcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCc-c-Cchhhc-CCCEEEEehhhhcCCC-ceE-EEEEc
Confidence            345589999999999999999999999997543321 1 111111 3799999999977765 754 44444

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=98.14  E-value=1.8e-06  Score=65.30  Aligned_cols=65  Identities=6%  Similarity=-0.168  Sum_probs=47.0

Q ss_pred             ccccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           5 SSLNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         5 tt~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      .+.+|.+-|   +++|+++|++||+|+++|+...+.  .+ .... -..+|.++...||||+.|.+.+.+++
T Consensus       145 ~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~g~--~~-~~~~-~~~~d~~~~s~~K~l~~~~g~g~~~~  212 (379)
T 3ke3_A          145 ETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASGC--VW-LDMK-ELGIDVLISAPQKGWSSTPCAGLVML  212 (379)
T ss_dssp             ETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTCTT--CC-CCHH-HHTCSEEEECTTTTTCSCCCEEEEEE
T ss_pred             cCCCceeCCHHHHHHHHHHHHHcCCEEEEEecccCC--cc-cccc-ccCCCEEEecchhhcCCCCceEEEEE
Confidence            456899999   999999999999999999963321  11 1111 01479999999999999855544333

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=98.14  E-value=1.7e-06  Score=73.55  Aligned_cols=71  Identities=11%  Similarity=0.024  Sum_probs=51.6

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCC-CC-CCCCc----cCc----cccccCccccCCCCCCCeeEEec
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNS-HS-PSPLQ----PGH----SVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~-~~-~~gi~----~AD----S~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      +.+|.+.|+++|+++|++||+|+|||++.++.+.+.+ .+ ...++    .+|    .++..+||+|+-| ..+++++.|
T Consensus       291 n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~-~~gg~I~v~  369 (730)
T 1c4k_A          291 TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF-SQTSQIHKK  369 (730)
T ss_dssp             CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC-TTCEEEEEE
T ss_pred             CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCC-CCEEEEEec
Confidence            3589999999999999999999999998654333322 11 11221    366    8999999999988 556676665


Q ss_pred             CC
Q psy2484          76 RV   77 (98)
Q Consensus        76 ~~   77 (98)
                      +.
T Consensus       370 ~~  371 (730)
T 1c4k_A          370 DS  371 (730)
T ss_dssp             CG
T ss_pred             ch
Confidence            54

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=98.13  E-value=1.7e-06  Score=66.30  Aligned_cols=65  Identities=8%  Similarity=0.129  Sum_probs=43.6

Q ss_pred             CCChHHHHHHHHHcCceEEeecccch--hh-------hcCCCCCC-----CCccCccccccCccccCCCCCCCeeEEecC
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGHNLS--SL-------ALNSHSPS-----PLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga~~~--al-------~~~~~~~~-----gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .+++++|+++|++||+|||+|++-..  +.       ........     ..+.+|.+++.+||++++|.  +++++.++
T Consensus       203 ~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~--Gg~~~~~~  280 (467)
T 2oqx_A          203 LANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM--GGLLCMKD  280 (467)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS--CEEEEECS
T ss_pred             HHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCC--ceEEEecC
Confidence            47899999999999999999975221  11       11111111     12568999999999999994  45555554


Q ss_pred             C
Q psy2484          77 V   77 (98)
Q Consensus        77 ~   77 (98)
                      +
T Consensus       281 ~  281 (467)
T 2oqx_A          281 D  281 (467)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=98.12  E-value=4e-06  Score=63.64  Aligned_cols=67  Identities=18%  Similarity=0.129  Sum_probs=47.5

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      .+|...++++|.++|++||+|+++|.+..............+...+.+++++||+++..  -+.+++.+
T Consensus       139 ~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~~g--~~g~~~~~  205 (418)
T 2c81_A          139 LFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTAG--EGGIIVTK  205 (418)
T ss_dssp             CTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSS--SCEEEEES
T ss_pred             CcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcccCCC--CeEEEEEC
Confidence            57889999999999999999999999744332122122222334778888889999884  44555654

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=98.12  E-value=1.6e-06  Score=66.93  Aligned_cols=62  Identities=10%  Similarity=-0.011  Sum_probs=44.9

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecc--cchhhhcCCCCCCCCccCccccccCcc-----ccCCCCCCCeeEE
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGH--NLSSLALNSHSPSPLQPGHSVSLPLGT-----WLNLPLSLPSPAR   73 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga--~~~al~~~~~~~~gi~~ADS~t~d~HK-----wL~vP~~~~~~ll   73 (98)
                      +.+|.++|+++|+++|+++|+|+|||..  ..+.+..     .+...+|.++++.||     |++-| .++.++.
T Consensus       206 n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~-----~~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~  274 (438)
T 1wyu_A          206 NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKP-----PGAYGADIAVGDGQSLGLPMGFGGP-HFGFLAT  274 (438)
T ss_dssp             CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCC-----HHHHTCSEEEEECTTTTCCCGGGCS-CCEEEEE
T ss_pred             CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCC-----CccCCCCEEEECCcccCCCccCCCC-CeeEEEE
Confidence            5789999999999999999999996643  2222211     133458999999777     77778 7764433

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=98.12  E-value=2.5e-06  Score=63.46  Aligned_cols=63  Identities=10%  Similarity=-0.015  Sum_probs=47.0

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeE
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPA   72 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~l   72 (98)
                      ...+|.+.|+++|.++|++||+|+++|.+.+.... + ......  +|.++..+||+++.+ +++.++
T Consensus       169 ~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~-~-~~~~~~--~d~~~~s~~K~~g~~-g~g~~~  231 (400)
T 3vax_A          169 NNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKV-P-GDLTTP--IDMISISGHKIGAPK-GVGALV  231 (400)
T ss_dssp             CTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTS-G-GGGGSC--CSEEEEETGGGTSCS-SCEEEE
T ss_pred             CCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCC-C-cChhhc--CcEEEEeHHHhCCCC-ceEEEE
Confidence            45589999999999999999999999997543221 1 112333  899999999977754 666444

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=98.12  E-value=1.6e-06  Score=64.10  Aligned_cols=66  Identities=6%  Similarity=-0.036  Sum_probs=47.9

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ...+|.+.|+++|+++|++||+|+++|.+.+.... + ...... .+|.++..+||+++.+ +++ +++.+
T Consensus       174 ~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~-~-~~~~~~-~~d~~~~s~~K~~g~~-G~G-~~~~~  239 (406)
T 1kmj_A          174 SNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHH-P-VDVQAL-DCDFYVFSGHKLYGPT-GIG-ILYVK  239 (406)
T ss_dssp             CTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTS-C-CCHHHH-TCSEEEEEGGGTTSCT-TCE-EEEEC
T ss_pred             CccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCC-C-Cccccc-CCCEEEEEchhccCCC-CcE-EEEEe
Confidence            45689999999999999999999999997543221 1 111111 4799999999999876 654 44444

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=98.11  E-value=2.1e-06  Score=62.41  Aligned_cols=67  Identities=12%  Similarity=0.089  Sum_probs=45.2

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccch-hhhcCCCCCC--CC-ccCccccccCccccCCCCCCCeeEEec
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLS-SLALNSHSPS--PL-QPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~-al~~~~~~~~--gi-~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      .+|.+-|   +++|+++|++||+|+++|.+.+. ++...+....  ++ ..+|++++.+|||.+ |++++ +++.+
T Consensus       156 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~-~~~~g-~l~~~  229 (359)
T 1svv_A          156 EVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG-MFGEA-LIILN  229 (359)
T ss_dssp             TTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC-SSCEE-EEECS
T ss_pred             CCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCC-CCceE-EEEEc
Confidence            4788877   99999999999999999997532 2111111111  11 468999999999855 64544 44433

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=98.08  E-value=2.5e-06  Score=63.65  Aligned_cols=70  Identities=11%  Similarity=0.080  Sum_probs=49.5

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      ..+|.+.|+++|+++|++||+|+++|.+.+............+...+.+++..||+|+-+ . +.+++.+++
T Consensus       134 n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~-~-~G~~~~~~~  203 (388)
T 1b9h_A          134 HMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAG-E-GGAVVFPDG  203 (388)
T ss_dssp             CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSS-S-CEEEEECTT
T ss_pred             CCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCC-C-eEEEEECCH
Confidence            357999999999999999999999999765332221111222235788899999999766 4 456665554

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=98.07  E-value=8.9e-06  Score=60.75  Aligned_cols=70  Identities=13%  Similarity=0.078  Sum_probs=49.5

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +++.|...++++|+++|++||+|+++|.+..............++.+|-++..+||+|+-| - +.+++.++
T Consensus       180 ~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~-~-~g~~~~~~  249 (425)
T 3ecd_A          180 FSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGP-R-GGFVLTND  249 (425)
T ss_dssp             CSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCC-S-CEEEEESC
T ss_pred             cccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCC-C-cEEEEeCC
Confidence            3566889999999999999999999999732222222222233445899999999999666 3 34555553

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=98.07  E-value=6.4e-06  Score=60.67  Aligned_cols=68  Identities=13%  Similarity=0.147  Sum_probs=49.4

Q ss_pred             ccccccCCChHHHHHHHH----HcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICA----KYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~----~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      ...+|.+-|+++|.++|+    +||+|+++|.+.+... .+ ..+.. ...|.++.++|||++-|.+++ +++.++
T Consensus       164 ~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~-~~-~~~~~-~~~d~~~~s~~K~~~~~~g~G-~~~~~~  235 (390)
T 1elu_A          164 LWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGS-LP-LDFSR-LEVDYYAFTGHKWFAGPAGVG-GLYIHG  235 (390)
T ss_dssp             CTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTT-BC-CCTTT-SCCSEEEEESSSTTCCCTTCE-EEEECT
T ss_pred             ccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCC-cC-CChhh-cCCCEEEccccccccCCCceE-EEEECH
Confidence            345899999999999999    9999999999765321 11 11211 247899999999998887765 444443

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=98.07  E-value=7.1e-06  Score=61.30  Aligned_cols=69  Identities=22%  Similarity=0.226  Sum_probs=48.8

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      ++.|.+.|+++|+++|++||+|+++|.+..............+..+|-++..+||+|.-|.  +.+++.++
T Consensus       173 ~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~--~G~~~~~~  241 (417)
T 3n0l_A          173 SAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPR--GGIIMTND  241 (417)
T ss_dssp             SSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCS--CEEEEESC
T ss_pred             cccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCC--eeEEEECC
Confidence            3458899999999999999999999997333333222212223357999999999996663  35555553

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=98.06  E-value=7.1e-06  Score=62.59  Aligned_cols=67  Identities=9%  Similarity=0.065  Sum_probs=50.1

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~   76 (98)
                      +..+|.+-|+++|+++|++||+|++||.+........+  +.  ..+|-++...|||++.| +.  +.+++.++
T Consensus       154 ~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~--~~--~~~di~~~S~sK~~~~~-~~~~~G~v~~~~  222 (389)
T 3acz_A          154 ANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKP--LE--LGADIALHSVSKYINGH-GDVIGGVSSAKT  222 (389)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCG--GG--TTCSEEEEETTTTTTCS-SCCCCEEEEESS
T ss_pred             CCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCc--cc--cCCeEEEECChhhccCC-CCceeEEEEECc
Confidence            44579999999999999999999999997543322111  11  24899999999999999 54  45666554

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=98.05  E-value=5.8e-06  Score=62.54  Aligned_cols=68  Identities=13%  Similarity=0.132  Sum_probs=48.2

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccC--ccccCCCCCCCeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPL--GTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~--HKwL~vP~~~~~~ll~r~   76 (98)
                      ..+|.+.|+++|+++|+++|+|+++|.+.+...........  ..+|-++...  +|+++.| +-+.+++.++
T Consensus       159 n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~di~~~S~~~sK~~~~~-G~~g~~~~~~  228 (399)
T 2oga_A          159 HLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIG--AGSSVAAFSFYPGKNLGCF-GDGGAVVTGD  228 (399)
T ss_dssp             CGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETT--CTTCEEEEECCTTSSSCCS-SCCEEEEESC
T ss_pred             CCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecc--cccCEEEEeCCCCccCCcC-CceEEEEeCC
Confidence            45899999999999999999999999976533222211221  2257777777  5999987 6555666653

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=98.03  E-value=5e-06  Score=61.60  Aligned_cols=68  Identities=12%  Similarity=0.141  Sum_probs=48.8

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCC-CccCccccccCccccC-CCCCCCeeEEec
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSP-LQPGHSVSLPLGTWLN-LPLSLPSPARTQ   75 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~g-i~~ADS~t~d~HKwL~-vP~~~~~~ll~r   75 (98)
                      ...+|.+.|+++|.++|++||+|+++|.+.+....-.+.+    ..+ ....|.++..+||+++ .| +  .+++.+
T Consensus       185 ~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~-g--G~~~~~  258 (399)
T 3tqx_A          185 FSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGAS-G--GYTSGH  258 (399)
T ss_dssp             ETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSC-C--EEEEEC
T ss_pred             CCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCc-e--EEEEcC
Confidence            3468999999999999999999999999875332222211    223 2567888889999999 76 4  444443

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=98.02  E-value=6.6e-06  Score=60.14  Aligned_cols=67  Identities=9%  Similarity=-0.050  Sum_probs=49.6

Q ss_pred             ccccccCCChHHHHHHHHH-cCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAK-YNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~-~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~   76 (98)
                      ...+|.+-|+++|.++|++ +|+|+++|.+.........  .  -..+|-++..+|||++.| +.  ..+++.++
T Consensus        93 ~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~--~--~~~~d~~~~s~~K~~~~~-~~r~~G~~~~~~  162 (331)
T 1pff_A           93 ANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNP--L--DLGVDIVVHSATKYINGH-TDVVAGLVCSRA  162 (331)
T ss_dssp             CTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCG--G--GGTCSEEEEETTTTTSSS-SSCCCEEEEECH
T ss_pred             CCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCCh--h--hcCCcEEEEECccccCCC-CCceEEEEEeCc
Confidence            3458999999999999999 9999999997543332111  1  124799999999999999 54  44555554

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=98.01  E-value=1.3e-05  Score=61.44  Aligned_cols=67  Identities=7%  Similarity=-0.028  Sum_probs=48.2

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC-ccCccccccCccccCCCCCCCeeEEec
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL-QPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi-~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ..+|.+.|+++|+++|++||+||++|.+.+....-++.+    .-++ ...|.+...+||+++.| +  .+++.+
T Consensus       205 n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~-g--G~v~~~  276 (427)
T 2w8t_A          205 SMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTV-G--GFVVSN  276 (427)
T ss_dssp             TTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSC-C--EEEEEC
T ss_pred             CCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccC-C--CEEEeC
Confidence            357889999999999999999999999754433222111    1233 35788899999999977 4  454544

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=98.01  E-value=9.7e-06  Score=62.14  Aligned_cols=67  Identities=7%  Similarity=-0.041  Sum_probs=49.1

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC--CCeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS--LPSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~--~~~~ll~r~   76 (98)
                      +..+|.+.|+++|+++|++||+|+++|...+........    -..+|-++...||+++-+ +  .+.+++.++
T Consensus       161 ~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~~----~~~~di~~~S~sK~lg~~-g~~~~G~v~~~~  229 (392)
T 3qhx_A          161 TNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPL----SLGADVVLHSTTKYIGGH-SDVVGGALVTND  229 (392)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGG----GGTCSEEEEETTTTTTCS-SCCCCEEEEESC
T ss_pred             CCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccCChH----HhCCcEEEEcCccccCCC-CCceEEEEEECc
Confidence            345799999999999999999999999976533221111    124789999999999988 4  245555553

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=98.00  E-value=2.9e-06  Score=65.03  Aligned_cols=65  Identities=6%  Similarity=0.058  Sum_probs=44.0

Q ss_pred             CCChHHHHHHHHHcCceEEeecccc---hhhhcCCC-CCCCC----------ccCccccccCccccCCCCCCCeeEEecC
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGHNL---SSLALNSH-SPSPL----------QPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga~~---~al~~~~~-~~~gi----------~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .+++++|+++|++||+|||+|++-.   +.+..... ...|+          +.+|+++..+||++++|.  +.+++.++
T Consensus       203 ~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~--Gg~~~~~d  280 (467)
T 1ax4_A          203 MSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI--GGLVAIRD  280 (467)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS--CEEEEESS
T ss_pred             hhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCc--ceEEEeCC
Confidence            4789999999999999999998522   21111000 01122          468999999999999983  45555553


Q ss_pred             C
Q psy2484          77 V   77 (98)
Q Consensus        77 ~   77 (98)
                      +
T Consensus       281 ~  281 (467)
T 1ax4_A          281 N  281 (467)
T ss_dssp             C
T ss_pred             H
Confidence            3

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=97.99  E-value=1.3e-05  Score=60.36  Aligned_cols=68  Identities=12%  Similarity=-0.031  Sum_probs=49.3

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC-CeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL-PSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~-~~~ll~r~   76 (98)
                      ...+|.+-|+++|+++|++||+|+++|.+........ . .  -..+|-+...+||+++.|... +.+++.++
T Consensus       147 ~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-~-~--~~~~di~~~s~sK~~~~~~~~~~G~~~~~~  215 (386)
T 1cs1_A          147 SNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN-P-L--ALGADLVLHSCTKYLNGHSDVVAGVVIAKD  215 (386)
T ss_dssp             CTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-G-G--GGTCSEEEEETTTTTTCSSCCCCEEEEESS
T ss_pred             CCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-c-c--ccCceEEEEcCcccccCCCCceeEEEEeCc
Confidence            3456888999999999999999999999754332211 1 1  124788899999999999432 35666654

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=97.90  E-value=2.6e-05  Score=60.47  Aligned_cols=68  Identities=15%  Similarity=0.096  Sum_probs=46.1

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +.+..-++++|+++|++||+||++|.+....+........-++.+|-++...||+|+-| -. .+++.++
T Consensus       195 ~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l~G~-~g-G~i~~~~  262 (447)
T 3h7f_A          195 AYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGG-RS-GLIVGKQ  262 (447)
T ss_dssp             SCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGGCCC-SC-EEEEECG
T ss_pred             CCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCCCCC-Ce-EEEEECH
Confidence            33444499999999999999999999743333222221222356799999999999866 23 4545443

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=97.89  E-value=1.4e-05  Score=60.50  Aligned_cols=68  Identities=10%  Similarity=0.022  Sum_probs=48.1

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .+|..+++++|.++|++||+|+++|.+..............+...|.+++..||.++ |...+ +++.++
T Consensus       131 ~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~-~~~~G-~~~~~~  198 (394)
T 1o69_A          131 LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIIT-TSGGG-MLIGKN  198 (394)
T ss_dssp             GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSC-CSSCE-EEEESC
T ss_pred             CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCC-CCCce-EEEECC
Confidence            578999999999999999999999998653222222212122358899999999887 43544 555543

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=97.85  E-value=1.5e-05  Score=60.33  Aligned_cols=60  Identities=18%  Similarity=0.077  Sum_probs=44.0

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC-C-CCCCccCccccccCccccCCCCC
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S-PSPLQPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~-~~gi~~ADS~t~d~HKwL~vP~~   67 (98)
                      .+|.+   +++++|+++|++||+|+++|.+.+....-.+. . +.++...|-++..+||+++.| +
T Consensus       186 ptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-G  250 (409)
T 2gb3_A          186 PTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSAC-G  250 (409)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCG-G
T ss_pred             CCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCc-c
Confidence            46765   67999999999999999999975442221111 1 334455688888999999988 6

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=97.82  E-value=1.7e-05  Score=58.54  Aligned_cols=65  Identities=15%  Similarity=0.179  Sum_probs=44.8

Q ss_pred             ccccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCC--ccCc--cccccCccccCCCCCCCe
Q psy2484           5 SSLNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPL--QPGH--SVSLPLGTWLNLPLSLPS   70 (98)
Q Consensus         5 tt~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi--~~AD--S~t~d~HKwL~vP~~~~~   70 (98)
                      ...+|.+   +++++|+++|++||+|+++|.+......-.+.  ....+  +..|  -+...+||+++.| +...
T Consensus       170 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~-G~r~  243 (391)
T 3dzz_A          170 HNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLA-ALHA  243 (391)
T ss_dssp             BTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCT-TTCC
T ss_pred             CCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhcccc-chhh
Confidence            3457888   89999999999999999999975432222111  11111  2256  6678899999988 6433

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=97.79  E-value=2.9e-05  Score=59.75  Aligned_cols=67  Identities=6%  Similarity=-0.091  Sum_probs=49.6

Q ss_pred             ccccccCCChHHHHHHHHH-cCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAK-YNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~-~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~   76 (98)
                      +..+|.+-|+++|+++|++ ||+|+++|.+.........  ..  ..+|-+...++||++.| +.  +.+++.++
T Consensus       157 ~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~--~~--~~~di~~~S~sK~~~~~-g~ri~G~~~~~~  226 (404)
T 1e5e_A          157 ANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNP--VD--FGVDVVVHSATKYINGH-TDVVAGLICGKA  226 (404)
T ss_dssp             CTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCG--GG--GTCSEEEEETTTTTTCS-SCCCCEEEEECH
T ss_pred             CCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCc--cc--cCCEEEEEcCccccCCC-CCCeEEEEEECH
Confidence            3467888999999999999 9999999997543321111  11  14789999999999999 65  45555554

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=97.78  E-value=2e-05  Score=58.94  Aligned_cols=66  Identities=11%  Similarity=0.053  Sum_probs=46.8

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCC-C---CCCCC-ccCccccccCccccCCCCCCCeeEEec
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNS-H---SPSPL-QPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~-~---~~~gi-~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      .+|.+.|+++|+++|++||+|+++|.+.+....-.. .   ...++ +++|-++..+||+++.+ +  .+++.+
T Consensus       185 ptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~-G--G~~~~~  255 (398)
T 3a2b_A          185 MEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASL-G--GFVAGD  255 (398)
T ss_dssp             TTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS-C--EEEEEC
T ss_pred             CCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCC-C--cEEEeC
Confidence            378999999999999999999999997643321111 1   11133 35788999999999966 5  444443

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=97.77  E-value=2.8e-05  Score=57.87  Aligned_cols=61  Identities=8%  Similarity=0.031  Sum_probs=44.4

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCC-C----CCCCCccCccccccCccccCCCCCC
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNS-H----SPSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~-~----~~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+   +++++|+++|++||+|+++|.+.+....-.+ .    .+.+....|-+...+||+++.| +.
T Consensus       172 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~  240 (389)
T 1gd9_A          172 PTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMT-GW  240 (389)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCG-GG
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCc-cc
Confidence            36665   4699999999999999999997544322111 1    1334456788899999999988 64

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=97.76  E-value=1.7e-05  Score=58.38  Aligned_cols=64  Identities=14%  Similarity=0.095  Sum_probs=42.1

Q ss_pred             ccCC---ChHHHHHHHHHcCceEEeecccch--hhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484           9 GHVD---NVSLLQEICAKYNLWLHLRGHNLS--SLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         9 Ga~D---~l~~i~~ic~~~~lWlHVDga~~~--al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      |.+-   ++++|+++|++||+|+|+|++...  ..........-.+.+|++...+||+|+.|.+  .+++.
T Consensus       150 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g--g~~~~  218 (357)
T 3lws_A          150 GVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAG--AILAG  218 (357)
T ss_dssp             SBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSC--EEEEE
T ss_pred             ceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCce--EEEEc
Confidence            5544   599999999999999999986431  1111111000014578899999999977844  44443

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=97.74  E-value=2.2e-05  Score=58.31  Aligned_cols=65  Identities=5%  Similarity=0.029  Sum_probs=47.4

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCc--cccCCCCCCCeeEEec
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLG--TWLNLPLSLPSPARTQ   75 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~H--KwL~vP~~~~~~ll~r   75 (98)
                      ..+|.+.|+++|.++|++||+|+++|.+.+.........+ +.  .|-++..+|  |||+-+  .+.+++.+
T Consensus       135 ~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~-~~--~d~~~~S~~k~K~l~~~--~~g~~~~~  201 (393)
T 1mdo_A          135 HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHI-GA--RGTAIFSFHAIKNITCA--EGGIVVTD  201 (393)
T ss_dssp             CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEET-TS--SSEEEEECCTTSSSCSS--SCEEEEES
T ss_pred             CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeec-CC--CCeEEEeCCCCCccccc--cceEEEeC
Confidence            4689999999999999999999999998653222221112 22  799999999  999755  34555654

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=97.74  E-value=3e-05  Score=57.67  Aligned_cols=62  Identities=15%  Similarity=0.152  Sum_probs=44.2

Q ss_pred             cccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCC----ccCccccccCccccCCCCCC
Q psy2484           6 SLNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPL----QPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         6 t~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi----~~ADS~t~d~HKwL~vP~~~   68 (98)
                      ..+|.+   +++++|+++|++||+|+++|.+++....-.+.  .+..+    ...|-+...+||+++.| +.
T Consensus       174 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~-G~  244 (388)
T 1j32_A          174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMT-GW  244 (388)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCT-TT
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCc-cc
Confidence            347777   67999999999999999999975442221111  11122    34688899999999988 73

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=97.73  E-value=2.5e-05  Score=58.33  Aligned_cols=65  Identities=12%  Similarity=-0.005  Sum_probs=43.0

Q ss_pred             ccccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC-C--CCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484           7 LNGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH-S--PSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         7 ~~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~--~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      .+|.+-|    +++|+++|++||+||++|.+.+......+. .  ..++ .+|.++  .+|+|+.++.++.++..
T Consensus       197 ~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s--~sK~~~~g~~~G~~~~~  268 (395)
T 1vef_A          197 EGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGI-VPDILT--LAKALGGGVPLGVAVMR  268 (395)
T ss_dssp             TTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEE--ECGGGGTTSSCEEEEEE
T ss_pred             CCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCC-CCCEEE--EcccccCCCceEEEEeh
Confidence            4787766    999999999999999999976531111111 1  1122 367664  49999987666655443

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=97.71  E-value=2.7e-05  Score=57.19  Aligned_cols=58  Identities=17%  Similarity=0.178  Sum_probs=38.4

Q ss_pred             ccCCC---hHHHHHHHHHcCceEEeecccchhh--hcCCCCCCCCccCccccccCccccCCCC
Q psy2484           9 GHVDN---VSLLQEICAKYNLWLHLRGHNLSSL--ALNSHSPSPLQPGHSVSLPLGTWLNLPL   66 (98)
Q Consensus         9 Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al--~~~~~~~~gi~~ADS~t~d~HKwL~vP~   66 (98)
                      |.+-|   +++|+++|++||+|+++|++.....  ........-...+|.++..+||+|+.|.
T Consensus       152 G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~  214 (359)
T 3pj0_A          152 GQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIA  214 (359)
T ss_dssp             SBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSS
T ss_pred             cccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcc
Confidence            66655   4555999999999999998643211  1111100001457899999999999994

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=97.71  E-value=4.5e-05  Score=56.64  Aligned_cols=65  Identities=9%  Similarity=0.158  Sum_probs=45.8

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcC--CC--CCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALN--SH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~--~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      .+|.+-|+++|+++|++||+|+++|.+.+....-+  ..  ...+ ...|-++..+||+++.| +  .+++.+
T Consensus       180 ptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~di~~~s~sK~~~~~-G--G~~~~~  248 (384)
T 1bs0_A          180 MDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK-VKPELLVVTFGKGFGVS-G--AAVLCS  248 (384)
T ss_dssp             TTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTT-CCCSEEEEESSSTTSSC-C--EEEEEC
T ss_pred             CCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcC-CCCcEEEeeccchhhcc-C--cEEEeC
Confidence            37999999999999999999999999754322110  00  1112 34788888999999965 4  455544

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=97.70  E-value=5.9e-05  Score=56.88  Aligned_cols=67  Identities=10%  Similarity=0.056  Sum_probs=46.7

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC-ccCccccccCccccCCCCCCCeeEEecC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL-QPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi-~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .+|.+.|+++|+++|++||+||++|.+......-++..    ..++ ...|-++..++|+++.+ +  .+++.++
T Consensus       198 ptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~-g--g~v~~~~  269 (409)
T 3kki_A          198 TLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR-A--GAIWCNN  269 (409)
T ss_dssp             TTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS-C--EEEEESS
T ss_pred             CCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC-c--eEEEECH
Confidence            47899999999999999999999999753322211111    1122 46788888999999988 2  4444443

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=97.69  E-value=8.6e-05  Score=55.40  Aligned_cols=68  Identities=12%  Similarity=0.144  Sum_probs=47.0

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-C---CCCCc-cCccccccCccccCCCCCCCeeEEec
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S---PSPLQ-PGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~---~~gi~-~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ..+|.+.|+++|+++|++||+|+++|.+.+..+..++. .   ..+++ ..|-++..+||+++-+.+  .+++.+
T Consensus       188 nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~g--G~~~~~  260 (401)
T 1fc4_A          188 SMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG--GYTAAR  260 (401)
T ss_dssp             TTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC--EEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCC--EEEEcC
Confidence            45899999999999999999999999986533322211 0   12332 468888899999944424  455544

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=97.66  E-value=5e-05  Score=56.05  Aligned_cols=66  Identities=17%  Similarity=0.126  Sum_probs=43.8

Q ss_pred             cccccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC-CC--CCCccCccccccCccccCCCCCCCeeEEe
Q psy2484           6 SLNGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH-SP--SPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         6 t~~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~--~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      ..+|.+.|    +++|+++|++||+|+++|.+.+.....++. ..  -|. .+|.+++.  |+++.++.++.++..
T Consensus       183 ~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~d~~s~S--K~~~~g~~~G~~~~~  255 (375)
T 2eh6_A          183 GEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNL-KPDVIALA--KGLGGGVPIGAILAR  255 (375)
T ss_dssp             TTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTSCCEEEEEE
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCC-CCCEEEEc--ccccCCCCeEEEEEc
Confidence            34688867    999999999999999999976532111211 11  121 37777666  999977656654443

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=97.65  E-value=8.6e-05  Score=57.71  Aligned_cols=69  Identities=12%  Similarity=0.019  Sum_probs=50.0

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC-CCe-eEEecCC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS-LPS-PARTQRV   77 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-~~~-~ll~r~~   77 (98)
                      +..+|.+-|+++|+++|++||+|++||.+.+.........    ..+|-++...+|+|+-|.. .+. +++.+++
T Consensus       162 ~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~----~g~div~~S~sK~l~g~g~~~gG~~vv~~~~  232 (400)
T 3nmy_A          162 TNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLS----LGADLVVHSATKYLNGHSDMVGGIAVVGDNA  232 (400)
T ss_dssp             CTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGG----GTCSEEEEETTTTTTCSSSCCCEEEEECSCH
T ss_pred             CCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhh----cCCcEEEecCccccCCCCCcceeEEEEeCCH
Confidence            3457888899999999999999999999865433322111    1489999999999998722 344 4555443

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=97.62  E-value=2.1e-05  Score=57.51  Aligned_cols=63  Identities=19%  Similarity=0.202  Sum_probs=41.5

Q ss_pred             ccC---CChHHHHHHHHHcCceEEeecccch-hhhcCCCCCCC-CccCccccccCccccCCCCCCCeeEE
Q psy2484           9 GHV---DNVSLLQEICAKYNLWLHLRGHNLS-SLALNSHSPSP-LQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         9 Ga~---D~l~~i~~ic~~~~lWlHVDga~~~-al~~~~~~~~g-i~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      |.+   +++++|.++|++||+|+++|++... +.......... ...+|++.+.+||+|+.|  .+.+++
T Consensus       147 G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~--~G~~~~  214 (347)
T 1jg8_A          147 GRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP--VGSVVV  214 (347)
T ss_dssp             SBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS--SCEEEE
T ss_pred             CccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC--ceEEEE
Confidence            666   4578999999999999999996321 11111111111 135788889999999988  344333

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=97.62  E-value=9.5e-05  Score=56.75  Aligned_cols=66  Identities=14%  Similarity=0.090  Sum_probs=48.5

Q ss_pred             cccccCCChHHHHHHHHHc----CceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC--CCeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAKY----NLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS--LPSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~----~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~--~~~~ll~r~   76 (98)
                      ..+|.+-|+++|+++|++|    |++++||.+....... +.  ... .+|-++..+||+++.+ +  .+.+++.++
T Consensus       149 nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~~--~~~-~~di~~~S~sK~~g~~-G~rigG~~~~~~  220 (393)
T 1n8p_A          149 NPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NP--LNF-GADIVVHSATKYINGH-SDVVLGVLATNN  220 (393)
T ss_dssp             TTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CG--GGG-TCSEEEEETTTTTTCS-SCCCCEEEEESC
T ss_pred             CCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-CH--HHc-CCeEEEEECcccccCC-CCceeEEEEeCC
Confidence            3578888999999999999    9999999975443322 11  111 3888899999999988 6  545555553

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=97.61  E-value=0.0001  Score=58.59  Aligned_cols=67  Identities=4%  Similarity=0.026  Sum_probs=48.5

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC-CeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL-PSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~-~~~ll~r~   76 (98)
                      ..+|.+-|+++|+++|++||+|+++|.+.........  .+  ..+|-+...+|||++.|.++ ..+++.++
T Consensus       228 NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~--~~--~~~div~~S~sK~~~g~~Gl~~G~l~~~~  295 (464)
T 1ibj_A          228 NPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRP--LE--LGADIVMHSATKFIAGHSDVMAGVLAVKG  295 (464)
T ss_dssp             TTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCG--GG--TTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred             CCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCCh--hh--cCCEEEEECCcccccCCCCCcEEEEEECh
Confidence            3478888999999999999999999997543222111  11  14799999999999987554 34555554

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=97.59  E-value=8.2e-05  Score=55.74  Aligned_cols=68  Identities=12%  Similarity=0.034  Sum_probs=44.9

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .+|..+|+++|+++|++||+|+|+|.+.+.................+++....|.++.+  .+.+++.++
T Consensus       137 ~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~~s~~~~k~~~~g--~gG~~~~~~  204 (390)
T 3b8x_A          137 LLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSNHIATM--EGGCIVTDD  204 (390)
T ss_dssp             GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSS--SCEEEEESC
T ss_pred             CccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEEEEccCCCCCccC--CceEEEeCC
Confidence            47888999999999999999999999754322221111222233456776777777665  345666554

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=97.59  E-value=7.5e-05  Score=59.00  Aligned_cols=67  Identities=9%  Similarity=-0.003  Sum_probs=49.4

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC--CCeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS--LPSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~--~~~~ll~r~   76 (98)
                      +..+|.+.|+++|+++|+++|+|++||.+.+....... .-   ..+|.++..++|+|+-| +  .+.+++.+.
T Consensus       177 ~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~-~~---~g~div~~S~sK~l~g~-g~~~gG~vv~~~  245 (430)
T 3ri6_A          177 SNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEA-KR---LGVDIEVLSSTKFISGG-GTSVGGVLIDHG  245 (430)
T ss_dssp             CTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCG-GG---GTCSEEEEECCCEEETT-EEECCEEEEECS
T ss_pred             CCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCh-HH---cCCEEEEECCcccccCC-CCceEEEEEECC
Confidence            34588999999999999999999999997653332211 11   12799999999999986 3  455666443

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=97.57  E-value=0.00014  Score=57.78  Aligned_cols=65  Identities=11%  Similarity=0.091  Sum_probs=47.2

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC--CCeeEEec
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS--LPSPARTQ   75 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~--~~~~ll~r   75 (98)
                      ..+|.+-|+++|+++|++||++++||.+.........  . . ..+|-++...||+++-+ +  ...+++.+
T Consensus       211 NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~--~-~-~g~Div~~S~sK~~gg~-gd~~~G~l~~~  277 (445)
T 1qgn_A          211 NPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKA--L-A-LGADLVLHSATKFLGGH-NDVLAGCISGP  277 (445)
T ss_dssp             TTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCT--T-T-TTCSEEEECTTTTTTCS-SSCCCEEEEEC
T ss_pred             CCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCc--c-c-cCCEEEEECCccccccc-ccceEEEEEEC
Confidence            4578999999999999999999999997653322211  1 1 24788999999999966 5  23444444

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=97.55  E-value=0.00015  Score=56.73  Aligned_cols=66  Identities=9%  Similarity=-0.040  Sum_probs=48.0

Q ss_pred             cccccCCChHHHHHHHHH--cCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAK--YNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~--~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~   76 (98)
                      ..+|.+-|+++|+++|++  ||++++||.+.+......+  +.  ..+|-++...||+++-+ +.  +.+++.++
T Consensus       178 NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p--~~--~g~Div~~S~sK~lg~~-g~~~~G~l~~~~  247 (415)
T 2fq6_A          178 SITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKA--LD--FGIDVSIQAATKYLVGH-SDAMIGTAVCNA  247 (415)
T ss_dssp             TTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCG--GG--GTCSEEEEETTTTTTCS-SSCCCEEEEECT
T ss_pred             CCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCc--cc--cCCeEEEEeCccccCCC-CCceEEEEEeCH
Confidence            346888899999999999  9999999997553321111  11  24799999999999998 52  44555544

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=97.46  E-value=0.00023  Score=54.83  Aligned_cols=68  Identities=9%  Similarity=-0.008  Sum_probs=49.5

Q ss_pred             ccccccCCChHHHHHHHHHcC-ceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC-CeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYN-LWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL-PSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~-lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~-~~~ll~r~   76 (98)
                      +..+|.+-|+++|+++|+++| +|++||.+........  .+.  ..+|-+...+|||++.|-+. ..+++.++
T Consensus       161 ~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~--~~~--~~~div~~S~sK~~~g~~~~~~G~v~~~~  230 (403)
T 3cog_A          161 TNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQR--PLA--LGADISMYSATKYMNGHSDVVMGLVSVNC  230 (403)
T ss_dssp             CTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCC--TTT--TTCSEEEEETTTTTTCSSCCCCEEEEECC
T ss_pred             CCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCC--ccc--cCCeEEEEcChhhccCCCCCeEEEEEECc
Confidence            345788889999999999999 9999999754433211  121  24898999999999998332 45556554

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=97.45  E-value=0.00013  Score=54.99  Aligned_cols=62  Identities=11%  Similarity=0.029  Sum_probs=43.9

Q ss_pred             cccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--C---CCCCccCccccccCccccCCCCCC
Q psy2484           6 SLNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--S---PSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         6 t~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~---~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      ..+|.+   +.+++|+++|++||+|+++|.+......-.+.  .   +.+....|-+...++|+++.| +.
T Consensus       171 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~  240 (411)
T 2o0r_A          171 NPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCT-GW  240 (411)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCT-TT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCc-cc
Confidence            356776   45799999999999999999975432221111  1   223345788899999999988 74

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=97.44  E-value=0.00016  Score=54.31  Aligned_cols=61  Identities=11%  Similarity=-0.036  Sum_probs=44.0

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCCccCccccccCccccCCCCCC
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+   +++++|+++|++||+|+++|.+.+....-.+.    .+.+....|-+...+||+++.| +.
T Consensus       186 ptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~  253 (389)
T 1o4s_A          186 PTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMT-GW  253 (389)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCG-GG
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCc-cc
Confidence            46776   45999999999999999999975533221111    1233345788899999999988 73

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=97.44  E-value=0.00023  Score=55.52  Aligned_cols=67  Identities=9%  Similarity=-0.044  Sum_probs=48.7

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~   76 (98)
                      +..+|.+.|+++|+++|++||+++++|.+.+........    -..+|-++..++|+|+.+ +.  +.+++.++
T Consensus       176 ~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~----~~g~div~~S~sK~l~~~-G~~~~G~vv~~~  244 (414)
T 3ndn_A          176 SNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGF----PLGVDVVVYSGTKHIDGQ-GRVLGGAILGDR  244 (414)
T ss_dssp             CTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCG----GGTCSEEEEETTTTTTCS-SCCCCEEEEECH
T ss_pred             CCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCch----hcCCCeEeccCCccccCC-CCceEEEEEECH
Confidence            345788999999999999999999999976543322211    112688899999999987 52  44555443

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=97.44  E-value=0.0001  Score=54.73  Aligned_cols=60  Identities=10%  Similarity=0.023  Sum_probs=42.8

Q ss_pred             cccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCC-CccCccccccCccccCCCCC
Q psy2484           6 SLNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSP-LQPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus         6 t~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~g-i~~ADS~t~d~HKwL~vP~~   67 (98)
                      ..+|.+   +++++|+++|++||+|+++|.+...... .+.  .+.. ....|-+...+||+++.| +
T Consensus       163 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~-G  228 (381)
T 1v2d_A          163 NPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEAT-G  228 (381)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCG-G
T ss_pred             CCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCc-c
Confidence            346666   4599999999999999999997543322 211  1111 235788899999999988 6

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=97.43  E-value=0.00015  Score=54.27  Aligned_cols=62  Identities=8%  Similarity=0.044  Sum_probs=44.5

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC-ccCccccccCccccCCCCC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL-QPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi-~~ADS~t~d~HKwL~vP~~   67 (98)
                      ...+|.+.|+++|+++|++||+|+++|.+......-++..    ..++ +..|-+...++|.++.| +
T Consensus       188 ~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~-G  254 (401)
T 2bwn_A          188 YSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF-G  254 (401)
T ss_dssp             CTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC-C
T ss_pred             cCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCC-C
Confidence            3457999999999999999999999999755332222211    1122 34566667999999998 5

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=97.38  E-value=0.00014  Score=53.59  Aligned_cols=64  Identities=17%  Similarity=0.216  Sum_probs=41.4

Q ss_pred             cccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCc----cCccccccCccccCCCCCCCe
Q psy2484           6 SLNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQ----PGHSVSLPLGTWLNLPLSLPS   70 (98)
Q Consensus         6 t~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~----~ADS~t~d~HKwL~vP~~~~~   70 (98)
                      ..+|.+   +++++|+++|++||+|+++|.+......-.+.  .+..+.    .-.-+...++|+++.| +...
T Consensus       175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-G~r~  247 (391)
T 4dq6_A          175 NPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIA-GLQS  247 (391)
T ss_dssp             TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCG-GGCC
T ss_pred             CCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCc-ccce
Confidence            447888   88999999999999999999975432211111  111111    1113355789999988 6433

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=97.34  E-value=0.00022  Score=54.56  Aligned_cols=68  Identities=7%  Similarity=-0.117  Sum_probs=46.7

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCC-CCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSP-SPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~-~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      ..+|..-|+++|.++|+ ||+++++|++............ ......+.+++.+||+++.+  .+.+++.++
T Consensus       137 ~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~g--~gG~~~~~~  205 (377)
T 3ju7_A          137 ATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFGIG--EGGLIYSKN  205 (377)
T ss_dssp             CGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSCCB--SCEEEEESC
T ss_pred             CCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCCCC--CcEEEEECC
Confidence            34788889999999999 9999999997432222221122 22234566777799999975  456666655

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=97.34  E-value=0.0002  Score=54.71  Aligned_cols=67  Identities=4%  Similarity=-0.032  Sum_probs=43.6

Q ss_pred             cccCC---ChHHHHHHHHHcCceEEeecccchh--hhcCC--CCCCCC----------ccCccccccCccccCCCCCCCe
Q psy2484           8 NGHVD---NVSLLQEICAKYNLWLHLRGHNLSS--LALNS--HSPSPL----------QPGHSVSLPLGTWLNLPLSLPS   70 (98)
Q Consensus         8 ~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~a--l~~~~--~~~~gi----------~~ADS~t~d~HKwL~vP~~~~~   70 (98)
                      +|.+=   ++++|+++|++||+|+++|.+....  .++++  ....|.          ..+|.+++..|||++.|  .+.
T Consensus       188 tG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~--~gG  265 (456)
T 2ez2_A          188 GGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVN--IGG  265 (456)
T ss_dssp             TSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS--SCE
T ss_pred             CCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCC--cee
Confidence            55543   5999999999999999999974432  11110  000111          34788888899998866  345


Q ss_pred             eEEecC
Q psy2484          71 PARTQR   76 (98)
Q Consensus        71 ~ll~r~   76 (98)
                      +++.++
T Consensus       266 ~~~~~~  271 (456)
T 2ez2_A          266 FLCMND  271 (456)
T ss_dssp             EEEESC
T ss_pred             EEEECC
Confidence            656544

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=97.32  E-value=0.00026  Score=53.85  Aligned_cols=65  Identities=14%  Similarity=0.122  Sum_probs=42.3

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccC--ccccCCCCCCCeeEEec
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPL--GTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~--HKwL~vP~~~~~~ll~r   75 (98)
                      .+|..+++++|+++|++||+|+++|.+...........+..  .+|=++..+  +|+|+-+ .. .+++.+
T Consensus       147 ~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~--~~di~~~S~sk~K~l~~~-~~-G~~v~~  213 (424)
T 2po3_A          147 LWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGS--LGDAEVFSFHATKAVNAF-EG-GAVVTD  213 (424)
T ss_dssp             GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECCTTSSSCCS-SC-EEEEES
T ss_pred             CCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeeccc--ccCEEEEeCCCCCCccCC-CC-eEEEeC
Confidence            57889999999999999999999999865322222221211  135444555  4888763 33 455555

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=97.31  E-value=0.00018  Score=54.21  Aligned_cols=59  Identities=14%  Similarity=0.079  Sum_probs=40.6

Q ss_pred             cccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccCcc---ccccCccccCCCCC
Q psy2484           6 SLNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPGHS---VSLPLGTWLNLPLS   67 (98)
Q Consensus         6 t~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~ADS---~t~d~HKwL~vP~~   67 (98)
                      ..+|.+   +++++|+++|++||+|+++|.+.+.... ...  .+..++ .|.   ++..+||+++.| +
T Consensus       185 nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~-~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~-G  251 (406)
T 1xi9_A          185 NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTY-EGEHISPGSLT-KDVPVIVMNGLSKVYFAT-G  251 (406)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBS-SSCCCCHHHHC-SSSCEEEEEESTTTTCCG-G
T ss_pred             CCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHcC-CCceEEEEeccccccCCC-c
Confidence            456765   4599999999999999999997544322 211  122222 343   566899999988 6

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=97.27  E-value=0.00049  Score=50.85  Aligned_cols=61  Identities=5%  Similarity=-0.117  Sum_probs=44.1

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCCccCccccccCccccCCCCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      ..+|.+-|++ |.++|++||+|+++|.+.+....-.+.    .+.+....|-+...+||+++.| +.
T Consensus       165 nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~  229 (370)
T 2z61_A          165 NPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMT-GW  229 (370)
T ss_dssp             TTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCG-GG
T ss_pred             CCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCc-cc
Confidence            3579999999 999999999999999975542221111    1223345677788999999988 73

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=97.25  E-value=0.00057  Score=50.75  Aligned_cols=62  Identities=8%  Similarity=-0.034  Sum_probs=40.3

Q ss_pred             cccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC--CCCC----CccCccccccCccccCCCCCC
Q psy2484           6 SLNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSP----LQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         6 t~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~g----i~~ADS~t~d~HKwL~vP~~~   68 (98)
                      ..+|.+=|   +++|+++|++||+|+++|.+.+....-.+.  .+..    ....+=+...++|++++| +.
T Consensus       190 nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-G~  260 (407)
T 3nra_A          190 NPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLS-GY  260 (407)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCG-GG
T ss_pred             CCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCC-ee
Confidence            34676666   999999999999999999975432221111  1111    122334556789999987 64

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=97.24  E-value=0.00073  Score=49.93  Aligned_cols=62  Identities=16%  Similarity=0.205  Sum_probs=41.0

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCCCCC--CCccCccccccCccccCCCCCCC
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSHSPS--PLQPGHSVSLPLGTWLNLPLSLP   69 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~--gi~~ADS~t~d~HKwL~vP~~~~   69 (98)
                      .+|.+=|   +++|+++|++||+|+++|.+......-.....+  +....|-+...++|+++.| +..
T Consensus       158 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~r  224 (364)
T 1lc5_A          158 PTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIP-GLR  224 (364)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCT-TTC
T ss_pred             CCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCC-ccc
Confidence            3676666   999999999999999999975432210111111  1122355567899999988 753

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=97.23  E-value=4.3e-05  Score=57.54  Aligned_cols=58  Identities=7%  Similarity=-0.097  Sum_probs=42.5

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCC
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLP   69 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~   69 (98)
                      ..+.+|.+.|+++|.++   +|+|++||++..... .+ .   .++.+|.++..+|||++.|-+++
T Consensus       174 ~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~-~~-~---~~~~~di~~~s~sK~~~~~gg~g  231 (398)
T 2fyf_A          174 NETSTGVAVAVRRPEGS---DDALVVIDATSGAGG-LP-V---DIAETDAYYFAPQKNFASDGGLW  231 (398)
T ss_dssp             EETTTTEECCCCCCTTC---C-CEEEEECTTTTTT-SC-C---CGGGCSEEEECTTSTTCSCSSEE
T ss_pred             cCCCcceecchHHhhhh---cCCeEEEEeccccCC-cc-c---CcccCcEEEEecCcccCCCCceE
Confidence            45678999999999887   999999999754321 11 1   23458999999999999993343

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=97.23  E-value=8.1e-05  Score=58.52  Aligned_cols=60  Identities=7%  Similarity=-0.080  Sum_probs=41.3

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeeccc-chhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHN-LSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~-~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      -+|++|.+-|+     ||+++|+++|||++- .+..-+.      ++.-|-++...||||| |.+++.+.+++
T Consensus       161 ~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id------~~~~~~~~~s~~K~~g-p~G~g~l~~~~  221 (377)
T 3e77_A          161 NETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVD------VSKFGVIFAGAQKNVG-SAGVTVVIVRD  221 (377)
T ss_dssp             EETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCC------GGGCSEEEEEGGGTTS-CTTCEEEEEET
T ss_pred             ccCchheEchh-----hhccCCCEEEEEcccccCCCCCc------hhhcCEEEEecccccC-CCccEEEEEcH
Confidence            46788999998     588999999999963 2222221      1222237899999998 65887544443

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=97.22  E-value=0.00074  Score=50.39  Aligned_cols=62  Identities=18%  Similarity=0.105  Sum_probs=39.7

Q ss_pred             ccccccCCChH---HHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccC-cc-ccccCccccCCCCCC
Q psy2484           5 SSLNGHVDNVS---LLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPG-HS-VSLPLGTWLNLPLSL   68 (98)
Q Consensus         5 tt~~Ga~D~l~---~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~A-DS-~t~d~HKwL~vP~~~   68 (98)
                      ...+|.+-|++   +|+++|++||+|+++|.+.+....-.+.  .+..++.. +. +...++|+++ | +.
T Consensus       185 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~-G~  253 (407)
T 2zc0_A          185 QNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-T-GF  253 (407)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-T-TS
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-C-Cc
Confidence            34578888876   9999999999999999975543221111  12222211 12 3446799999 8 64

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=97.20  E-value=5.9e-05  Score=59.23  Aligned_cols=62  Identities=11%  Similarity=0.041  Sum_probs=41.5

Q ss_pred             CcccccccC-CChHHHHHHHHHcCceEEeeccc-chhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           3 IGSSLNGHV-DNVSLLQEICAKYNLWLHLRGHN-LSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         3 aGtt~~Ga~-D~l~~i~~ic~~~~lWlHVDga~-~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      --+|++|.+ +|+++|+     +|+.+|||++- .+.+-+.   ++   .-|=+.+..||||| |.+++.+.+.++
T Consensus       174 h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pid---v~---~~~~~~~s~hK~lG-P~G~g~l~v~~~  237 (386)
T 3qm2_A          174 PNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLD---VS---RYGVIYAGAQKNIG-PAGLTLVIVRED  237 (386)
T ss_dssp             SEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCC---GG---GCSEEEEETTTTTC-CTTEEEEEEEGG
T ss_pred             CCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCC---cc---ccCEEEEecccccC-CCccEEEEECHH
Confidence            346788995 9999986     89999999963 2222221   11   12235688999998 768875555543

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=97.16  E-value=0.00046  Score=52.24  Aligned_cols=61  Identities=11%  Similarity=0.107  Sum_probs=43.0

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCC-cc-------Ccc--ccccCccccCCCCCC
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPL-QP-------GHS--VSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi-~~-------ADS--~t~d~HKwL~vP~~~   68 (98)
                      .+|.+-|   +++|+++|++||+|+++|.+++....-...  ....+ +.       +|.  +...+||++++| +.
T Consensus       200 ptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~-Gl  275 (428)
T 1iay_A          200 PLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLP-GF  275 (428)
T ss_dssp             TTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCG-GG
T ss_pred             CCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCC-Cc
Confidence            4788888   999999999999999999986543221111  11112 12       674  578999999998 75

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=97.12  E-value=0.00056  Score=50.91  Aligned_cols=67  Identities=7%  Similarity=-0.068  Sum_probs=41.3

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC-CCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH-SPSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      .+|.+=|   +++|+++|++||+|+++|.++.....-.+. ........+-+...++|+++.| +...-.+.
T Consensus       173 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-G~r~G~~~  243 (391)
T 3h14_A          173 PTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMT-GWRVGWMV  243 (391)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCT-TSCCEEEE
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCc-cceeEEEE
Confidence            4666655   999999999999999999975432211111 1111222223344789999988 76444443

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=97.11  E-value=0.00029  Score=55.42  Aligned_cols=67  Identities=3%  Similarity=-0.130  Sum_probs=47.6

Q ss_pred             cccccCCChHHHHHHHHH--cCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC-CeeEEec
Q psy2484           6 SLNGHVDNVSLLQEICAK--YNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL-PSPARTQ   75 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~--~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~-~~~ll~r   75 (98)
                      ..+|.+.|+++|+++|++  ||+|++||.+.+......+..   -..+|-++..+||+|+-+... +.+++-+
T Consensus       174 nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~---~~g~Div~~S~sK~lgg~~~~~GG~v~~~  243 (409)
T 3jzl_A          174 RPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPP---EVGADIIAGSLIKNPGGGLAKTGGYIAGK  243 (409)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSG---GGTCSEEEEETTSGGGTTTCSSCEEEEEC
T ss_pred             CCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCcc---ccCCeEEEECccccCCccCCceEEEEEeC
Confidence            457889999999999999  999999999865433111111   123799999999999976212 3444443

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=97.10  E-value=0.00049  Score=54.68  Aligned_cols=56  Identities=5%  Similarity=-0.040  Sum_probs=43.2

Q ss_pred             cccccCCChHHHHHHHHH--cCceEEeecccchhhhcCCCCCCCCc-cCccccccCccccCCC
Q psy2484           6 SLNGHVDNVSLLQEICAK--YNLWLHLRGHNLSSLALNSHSPSPLQ-PGHSVSLPLGTWLNLP   65 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~--~~lWlHVDga~~~al~~~~~~~~gi~-~ADS~t~d~HKwL~vP   65 (98)
                      ..+|.+.|+++|+++|++  +|+|++||.+.+......+    .++ .+|-++...||+|+-.
T Consensus       191 nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~----p~~~gaDiv~~S~sK~lgg~  249 (427)
T 3hvy_A          191 RKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKE----PTDVGADIIAGSLIKNIGGG  249 (427)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSC----GGGGTCSEEEEETTSGGGTT
T ss_pred             CccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCC----CcccCCeEEEECCccccccc
Confidence            456888999999999999  8999999998654331111    122 3799999999999984

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=97.09  E-value=0.00068  Score=51.06  Aligned_cols=60  Identities=8%  Similarity=-0.022  Sum_probs=39.6

Q ss_pred             cccC---CChHHHHHHHHHcCceEEeecccchhhhcCC-C-C---CCCCccCccccccCccccCCCCCC
Q psy2484           8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNS-H-S---PSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~-~-~---~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      +|.+   +.+++|+++|++||+|+++|.+......-.+ . .   +.+....|-+...++|+++.| +.
T Consensus       185 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~  252 (412)
T 2x5d_A          185 TAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMA-GW  252 (412)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCT-TS
T ss_pred             CCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCc-cc
Confidence            5555   4589999999999999999997543322111 1 1   222234556678899999988 74

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=97.07  E-value=0.0006  Score=53.79  Aligned_cols=57  Identities=2%  Similarity=-0.129  Sum_probs=42.6

Q ss_pred             ccccccCCChHHHHHHHHH--cCceEEeecccchhhhcCCCCCCCCccCccccccCccccCC
Q psy2484           5 SSLNGHVDNVSLLQEICAK--YNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNL   64 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~--~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~v   64 (98)
                      +..+|..+++++|+++|++  +|+|++||.+.+....-.+....   .+|-++..++|+|+-
T Consensus       179 ~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~~---g~Di~~~S~sK~lgg  237 (431)
T 3ht4_A          179 TRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHV---GADLMAGSLIKNPGG  237 (431)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGT---TCSEEEEETTSGGGT
T ss_pred             CCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcccc---CCeEEEcCccccCCC
Confidence            4558889999999999999  99999999975544321111111   278999999999775

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=97.06  E-value=0.00057  Score=54.33  Aligned_cols=57  Identities=2%  Similarity=-0.098  Sum_probs=43.4

Q ss_pred             cccccCCChHHHHHHHHH--cCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484           6 SLNGHVDNVSLLQEICAK--YNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~--~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      ..+|.+.|+++|+++|++  +|+|++||.+.+......+..   -..+|-++..+||+++-+
T Consensus       191 nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~---~~gaDiv~~S~sK~lgg~  249 (427)
T 3i16_A          191 RRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT---DVGADLIAGSLIKNIGGG  249 (427)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG---GGTCSEEEEETTSGGGTT
T ss_pred             CCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCcc---ccCCeEEEecCcccCCCC
Confidence            457888999999999999  999999999765433111111   124799999999999984

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=97.05  E-value=0.00069  Score=50.41  Aligned_cols=67  Identities=10%  Similarity=0.098  Sum_probs=42.2

Q ss_pred             ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCc-c-CccccccCccccCCCCCCC-eeEEec
Q psy2484           7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQ-P-GHSVSLPLGTWLNLPLSLP-SPARTQ   75 (98)
Q Consensus         7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~-~-ADS~t~d~HKwL~vP~~~~-~~ll~r   75 (98)
                      .+|.+=   .+++|+++|++||+|+++|.+......-.+.  .+.++. . .|- ...++|++++| +.. .+++.+
T Consensus       174 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~-G~r~G~~~~~  248 (390)
T 1d2f_A          174 PTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIP-ALTGAYGIIE  248 (390)
T ss_dssp             TTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCG-GGCCEEEEEC
T ss_pred             CCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhccc-ChhheEEEEC
Confidence            356553   4899999999999999999975432211111  122221 1 244 78889999988 753 334444

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=97.04  E-value=0.00025  Score=52.25  Aligned_cols=57  Identities=9%  Similarity=-0.201  Sum_probs=40.2

Q ss_pred             cccccc-CCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           5 SSLNGH-VDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         5 tt~~Ga-~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      .+.+|. ++|+++|      +|+|++||++..... .+   . .++..|-++...|||++.+ +++.++.
T Consensus       152 ~n~tG~~~~~l~~i------~~~~vivD~a~~~~~-~~---~-~~~~~d~~~~s~~K~~g~~-G~G~l~~  209 (362)
T 2c0r_A          152 ETIEGAQFKAFPDT------GSVPLIGDMSSDILS-RP---F-DLNQFGLVYAGAQKNLGPS-GVTVVIV  209 (362)
T ss_dssp             ETTTTEECSSCCCC------TTSCEEEECTTTTTS-SC---C-CGGGCSEEEEETTTTTCCS-SCEEEEE
T ss_pred             cCccceeccccccc------CCCEEEEEChhhccC-Cc---c-chhHCcEEEEeccccccCc-CcEEEEE
Confidence            456888 5888887      899999999754331 11   1 2444599999999999965 7554433

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=97.04  E-value=0.00047  Score=52.33  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=40.3

Q ss_pred             cccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCC----ccCccccccCccccCCCCCCC
Q psy2484           6 SLNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPL----QPGHSVSLPLGTWLNLPLSLP   69 (98)
Q Consensus         6 t~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi----~~ADS~t~d~HKwL~vP~~~~   69 (98)
                      ..+|.+   +++++|+++|++||+||++|.+......-...  .+..+    ..-+-+...++|++++| +..
T Consensus       205 nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-G~~  276 (421)
T 3l8a_A          205 NPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIA-GTK  276 (421)
T ss_dssp             TTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCG-GGC
T ss_pred             CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCc-hhh
Confidence            346777   88999999999999999999974322111111  11111    12223456789999987 653

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=97.04  E-value=0.00043  Score=51.50  Aligned_cols=53  Identities=11%  Similarity=0.028  Sum_probs=35.7

Q ss_pred             cCCChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCCCC
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~   67 (98)
                      ..+++++|+++|++||+||++|.+..+.....+.   ...++ ..|-+++  +|.++ | +
T Consensus       202 ~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~t~--sK~~~-~-G  257 (406)
T 4adb_A          202 SNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGV-TPDLLTT--AKALG-G-G  257 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGG-T-T
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCC-CCCEEEe--chhhc-C-C
Confidence            5578999999999999999999975421111111   01122 2566665  99999 6 5

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=97.00  E-value=0.00047  Score=51.25  Aligned_cols=60  Identities=12%  Similarity=0.015  Sum_probs=41.7

Q ss_pred             ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCC-C-CCCC---CccCccccccCccccCCCCC
Q psy2484           7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNS-H-SPSP---LQPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus         7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~-~-~~~g---i~~ADS~t~d~HKwL~vP~~   67 (98)
                      .+|.+=   ++++|+++|++||+|+++|.+......-.+ . .+..   ....|-+...++|+++.| +
T Consensus       175 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G  242 (386)
T 1u08_A          175 PSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMT-G  242 (386)
T ss_dssp             TTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCG-G
T ss_pred             CCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCc-c
Confidence            456654   579999999999999999997543221111 1 1222   234677888999999988 7

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=97.00  E-value=0.00047  Score=50.90  Aligned_cols=63  Identities=17%  Similarity=0.108  Sum_probs=40.3

Q ss_pred             cccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCC
Q psy2484           6 SLNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLP   69 (98)
Q Consensus         6 t~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~   69 (98)
                      ..+|.+-|   +++|+++|++||+|+.+|.+......-+..........+-+...++|.+++| +..
T Consensus       165 nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~r  230 (375)
T 3op7_A          165 NPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLP-GIR  230 (375)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCG-GGC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCc-ccc
Confidence            45788888   9999999999999999999743321111111101111223455788999988 653

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=96.99  E-value=0.00073  Score=51.04  Aligned_cols=60  Identities=13%  Similarity=0.094  Sum_probs=42.0

Q ss_pred             ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCC-C-C---CCCCccCccccccCccccCCCCC
Q psy2484           7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNS-H-S---PSPLQPGHSVSLPLGTWLNLPLS   67 (98)
Q Consensus         7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~-~-~---~~gi~~ADS~t~d~HKwL~vP~~   67 (98)
                      .+|.+=   ++++|+++|++||+|+++|.++.....-.+ . .   +.+....|-+...++|+++.| +
T Consensus       194 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~-G  261 (429)
T 1yiz_A          194 PLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLT-G  261 (429)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCG-G
T ss_pred             CCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCC-C
Confidence            356664   599999999999999999997543221111 1 1   222345677888999999988 7

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=96.98  E-value=0.0014  Score=49.11  Aligned_cols=70  Identities=11%  Similarity=-0.061  Sum_probs=44.7

Q ss_pred             cccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCC-----C-CCCCCccC-ccc-cccCccccCCCCCCC-eeEE
Q psy2484           6 SLNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNS-----H-SPSPLQPG-HSV-SLPLGTWLNLPLSLP-SPAR   73 (98)
Q Consensus         6 t~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~-----~-~~~gi~~A-DS~-t~d~HKwL~vP~~~~-~~ll   73 (98)
                      ..+|.+-|   +++|+++|++||+|+++|.++.....-.+     . .+..++.. +.+ ...++|+++.| +.. .+++
T Consensus       188 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-Glr~G~~~  266 (416)
T 1bw0_A          188 NPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVP-GWRLGWLL  266 (416)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCG-GGCCEEEE
T ss_pred             CCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCC-CceEEEEE
Confidence            35688877   99999999999999999997654221111     1 22333322 233 45789999988 642 2444


Q ss_pred             ecC
Q psy2484          74 TQR   76 (98)
Q Consensus        74 ~r~   76 (98)
                      .++
T Consensus       267 ~~~  269 (416)
T 1bw0_A          267 YVD  269 (416)
T ss_dssp             EEC
T ss_pred             eeC
Confidence            444

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=96.96  E-value=0.00076  Score=50.19  Aligned_cols=69  Identities=12%  Similarity=0.065  Sum_probs=43.4

Q ss_pred             cccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCc----cCccccccCccccCCCCCCC-eeEEec
Q psy2484           6 SLNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQ----PGHSVSLPLGTWLNLPLSLP-SPARTQ   75 (98)
Q Consensus         6 t~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~----~ADS~t~d~HKwL~vP~~~~-~~ll~r   75 (98)
                      ..+|.+-|   +++|+++|++||+|+++|.+......-.+.  .+..+.    ..+=+...++|++++| +.. .+++.+
T Consensus       175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~r~G~~~~~  253 (399)
T 1c7n_A          175 NPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIA-GMGMSNIIIK  253 (399)
T ss_dssp             TTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCG-GGCCEEEECC
T ss_pred             CCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhcccc-chheEEEEEC
Confidence            34677767   999999999999999999975432211111  122221    1122455789999988 743 344444

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=96.90  E-value=0.00078  Score=50.35  Aligned_cols=66  Identities=8%  Similarity=0.045  Sum_probs=41.0

Q ss_pred             cccc----CCChHHHHHHHHHcCceEEeecccchhhhcCCC-CC--CCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           7 LNGH----VDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-SP--SPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         7 ~~Ga----~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~--~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .+|.    .+++++|+++|++||+||++|.+........+. ..  -++ .+|-+++  +|+|+-++.++. ++.++
T Consensus       195 ptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~r~G~-~~~~~  267 (397)
T 2ord_A          195 ESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGV-VPDVLTT--AKGLGGGVPIGA-VIVNE  267 (397)
T ss_dssp             TTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEE-EEECS
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCC-CCCeeee--ccccCCCcCeEE-EEEch
Confidence            3566    489999999999999999999976421111111 01  122 2676654  899994433443 34444

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=96.86  E-value=0.0022  Score=48.27  Aligned_cols=61  Identities=7%  Similarity=-0.026  Sum_probs=39.0

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCCCC-------CCC---ccCccccccCccccCCCCCC
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSHSP-------SPL---QPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~-------~gi---~~ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+=|   +++|+++|++||+|+++|.+.+....-.....       ..+   ...+-+...++|++++| +.
T Consensus       194 ptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~  267 (437)
T 3g0t_A          194 PTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYA-GQ  267 (437)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCG-GG
T ss_pred             CCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCc-cc
Confidence            3565544   88899999999999999997542211111111       222   22334566889999988 64

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=96.83  E-value=0.00073  Score=51.37  Aligned_cols=60  Identities=15%  Similarity=0.106  Sum_probs=38.5

Q ss_pred             cccC---CChHHHHHHHHHcCceEEeecccchhhhcCCCC--CCCC-cc---------Cc--cccccCccccCCCCCC
Q psy2484           8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS--PSPL-QP---------GH--SVSLPLGTWLNLPLSL   68 (98)
Q Consensus         8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~--~~gi-~~---------AD--S~t~d~HKwL~vP~~~   68 (98)
                      +|.+   +++++|+++|++||+|+.+|.+......-.+..  ...+ ..         .|  -+...++|+|++| +.
T Consensus       204 tG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~-G~  280 (435)
T 3piu_A          204 LGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLP-GF  280 (435)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCG-GG
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCC-ce
Confidence            5665   667999999999999999999754332222111  0000 00         22  3466899999988 64

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=96.80  E-value=0.00052  Score=50.17  Aligned_cols=65  Identities=6%  Similarity=0.016  Sum_probs=38.4

Q ss_pred             cccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      +|.+   +.+++|+++|++||+|+++|.+......-...   ...+.....-+...++|.+++| +...-.+
T Consensus       157 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~r~g~~  227 (361)
T 3ftb_A          157 NGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMP-GIRFGYG  227 (361)
T ss_dssp             TTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCG-GGCCEEE
T ss_pred             CCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCC-CcceeEE
Confidence            5555   35788888899999999999975332221111   1111111222344789999988 6543333

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=96.78  E-value=0.00095  Score=49.71  Aligned_cols=67  Identities=7%  Similarity=-0.014  Sum_probs=41.2

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--C---CCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--S---PSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~---~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      .+|.+   +++++|+++|++||+|+++|.++.....-.+.  .   ..+...-+=+...++|.+++| +...-.+.
T Consensus       179 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~-G~r~G~~~  253 (410)
T 3e2y_A          179 PLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVT-GWKLGWSI  253 (410)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCG-GGCCEEEE
T ss_pred             CCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCC-CceEEEEE
Confidence            46777   78999999999999999999975432211111  1   111111112334678999988 64333333

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=96.75  E-value=0.0028  Score=48.21  Aligned_cols=62  Identities=5%  Similarity=-0.058  Sum_probs=39.9

Q ss_pred             CChHHHHHHHHHcCceEEeecccchhhhcCCC--C---CCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484          12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--S---PSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus        12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~---~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      +++++|+++|++||+|+.+|.++.....-.+.  .   +.+....+=+...++|++++| +...-.+.
T Consensus       229 ~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-G~r~G~~~  295 (449)
T 3qgu_A          229 AQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFT-GVRLGWTV  295 (449)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCT-TCCCEEEE
T ss_pred             HHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCc-cceeEEEe
Confidence            46999999999999999999975542211111  1   222223344567889999988 65444443

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.0012  Score=50.90  Aligned_cols=61  Identities=15%  Similarity=0.080  Sum_probs=42.6

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC-CCC----CCccCccccccCccccCCCCCC
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-SPS----PLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~~----gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+   +++++|+++|++||+|+.+|.++.....-.+. .+.    +....|-+...++|++++| +.
T Consensus       213 ptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~-G~  281 (447)
T 3b46_A          213 PIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAAT-GW  281 (447)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCT-TS
T ss_pred             CCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCc-ch
Confidence            46766   78999999999999999999975542211111 111    2234566777899999988 73

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=96.65  E-value=0.0022  Score=47.39  Aligned_cols=61  Identities=16%  Similarity=0.132  Sum_probs=38.7

Q ss_pred             ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCC-C-CC--CCccCccccccCccccCCCCCC
Q psy2484           7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S-PS--PLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~-~~--gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+=   .+++|+++|++||+|+++|.+......-.+. . .+  +....+=+...++|+++.| +.
T Consensus       170 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~  237 (376)
T 2dou_A          170 PTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLA-GF  237 (376)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCG-GG
T ss_pred             CcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCCh-hh
Confidence            456654   4789999999999999999975432211111 1 11  1112233456889999988 64

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=96.53  E-value=0.005  Score=46.62  Aligned_cols=66  Identities=15%  Similarity=0.158  Sum_probs=40.7

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      .+|.+=|   +++|+++|++||+|+++|.+++........  ........+-+...++|+ +.| +...-.+.
T Consensus       218 ptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~-G~r~G~~~  288 (444)
T 3if2_A          218 PTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLP-GMRTGIIV  288 (444)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCG-GGCCEEEE
T ss_pred             CCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cCC-CCceEEEE
Confidence            3666666   899999999999999999986532110000  111122334556788997 666 55443444

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=96.51  E-value=0.0028  Score=46.94  Aligned_cols=62  Identities=10%  Similarity=-0.022  Sum_probs=42.4

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-C-CCCCccCccccccCccccCCCCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S-PSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~-~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      ..+|.+-|+++|.++|+++++|+++|.+.+....-.+. . .+.....+-+...++|+++.| +.
T Consensus       175 nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~  238 (369)
T 3cq5_A          175 NPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFA-GG  238 (369)
T ss_dssp             TTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCG-GG
T ss_pred             CCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCc-cc
Confidence            45899999999999999999999999975432211111 1 111111235667889999988 64

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=96.50  E-value=0.0042  Score=46.52  Aligned_cols=55  Identities=7%  Similarity=0.054  Sum_probs=36.0

Q ss_pred             ccccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCC
Q psy2484           7 LNGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNL   64 (98)
Q Consensus         7 ~~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~v   64 (98)
                      ++|.+-+    +++|+++|++||+||++|.+........+.   ...++ ..|-+  .++|+++.
T Consensus       211 ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~di~--s~sK~~~~  272 (426)
T 1sff_A          211 EGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGV-APDLT--TFAKSIAG  272 (426)
T ss_dssp             TTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTS-CCSEE--EECGGGGT
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCC-CCCEE--EEcccccC
Confidence            4786667    999999999999999999975531111111   11122 24544  56799984

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=96.50  E-value=0.00088  Score=50.78  Aligned_cols=61  Identities=7%  Similarity=-0.033  Sum_probs=42.1

Q ss_pred             cc-cCCChHHHHHHHHHcCceEEeecccchhhhcCCCC--CCCCccCccccccCccccCCCCCCCe
Q psy2484           8 NG-HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS--PSPLQPGHSVSLPLGTWLNLPLSLPS   70 (98)
Q Consensus         8 ~G-a~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~--~~gi~~ADS~t~d~HKwL~vP~~~~~   70 (98)
                      +| ...++++|+++|++||+|+++|.+.+....-+...  ... ..+|-++..+||+|+-| ..+.
T Consensus       154 tG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~~di~~~S~sK~l~g~-~~G~  217 (374)
T 2aeu_A          154 KVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALK-LGADLVVTSTDKLMEGP-RGGL  217 (374)
T ss_dssp             CBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHH-HTCSEEEEETTSSSSSC-SCEE
T ss_pred             CCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccc-cCCcEEEecCcccccCc-ceEE
Confidence            46 78899999999999999999999765443101110  001 13577888999998655 5554

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=96.50  E-value=0.0024  Score=47.05  Aligned_cols=66  Identities=12%  Similarity=0.045  Sum_probs=43.1

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc--cCccccccCccccCCCCCCCeeEEe
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ--PGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~--~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      ..+|.+=|+++|.++|+++|+|+++|.+....  ..+......+  .-+-+...++|+++.| +...-.+.
T Consensus       160 nptG~~~~~~~l~~l~~~~~~~li~De~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~-G~r~G~~~  227 (360)
T 3hdo_A          160 APLGPSFPLEYIDELARRCAGMLVLDETYAEF--AESNALELVRRHENVVVTRTLSKSYSLA-GMRIGLAI  227 (360)
T ss_dssp             TTTCCCCCHHHHHHHHHHBSSEEEEECTTGGG--SSCCCTHHHHHCSSEEEEEESTTTTSCT-TSCCEEEE
T ss_pred             CCCCCCcCHHHHHHHHHHCCCEEEEECChHhh--CCcchhHHhccCCCEEEEecchHhhcCC-ccceeeEe
Confidence            45799999999999999999999999975431  1111111111  1113345899999988 65433343

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=96.44  E-value=0.0036  Score=47.37  Aligned_cols=60  Identities=7%  Similarity=0.020  Sum_probs=38.9

Q ss_pred             CChHHHHHHHHHcCceEEeecccchhhhcCCC--C---CCCCccCccccccCccccCCCCCCCeeEE
Q psy2484          12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--S---PSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus        12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~---~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      +++.+|+++|++||+|+.+|.+++... ..+.  .   ..+....+=+...++|.+++| +...-.+
T Consensus       218 ~~l~~l~~la~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-G~r~G~~  282 (432)
T 3ei9_A          218 EQLTQLVEFAKKNGSIIVYDSAYAMYM-SDDNPRSIFEIPGAEEVAMETASFSNYAGFT-GVRLGWT  282 (432)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTGGGC-CSSCCSSGGGSTTGGGTEEEEEESHHHHCTT-TTCCEEE
T ss_pred             HHHHHHHHHHHHcCcEEEEccchHhhc-cCCCCCChhhcCCCCCeEEEEecchhccCCc-ccceEEE
Confidence            568888999999999999999754322 2221  1   222222334466889999988 7533333

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=96.41  E-value=0.00075  Score=52.46  Aligned_cols=58  Identities=9%  Similarity=-0.154  Sum_probs=39.0

Q ss_pred             cccccccC-CChHHHHHHHHHcCceEEeecccc-hhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           4 GSSLNGHV-DNVSLLQEICAKYNLWLHLRGHNL-SSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         4 Gtt~~Ga~-D~l~~i~~ic~~~~lWlHVDga~~-~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      -+|++|.+ |+      |++ +|+.+|||++-. +..-+   .+   +..|-++...||||| |.+++.+.+.+
T Consensus       149 ~e~~tG~~~~~------i~~-~~~~~~vD~~q~~g~~~i---d~---~~~d~~~~s~~K~~g-p~G~g~l~~~~  208 (361)
T 3m5u_A          149 NNTIYGTQYQN------YPK-TKTPLIVDASSDFFSRKV---DF---SNIALFYGGVQKNAG-ISGLSCIFIRK  208 (361)
T ss_dssp             EETTTTEECSS------CCC-CSSCEEEECGGGTTSSCC---CC---TTEEEEEEETTTTSS-CTTCEEEEEEH
T ss_pred             CCCCcceeCCc------ccc-cCCEEEEEcccccCCCCC---Cc---ccCCEEEEechhccC-CCccEEEEEcH
Confidence            45778886 43      344 499999999632 22211   12   346899999999998 65887655544

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=96.35  E-value=0.0035  Score=47.37  Aligned_cols=61  Identities=7%  Similarity=-0.213  Sum_probs=39.3

Q ss_pred             ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCC-CCCCC---ccCccccccCccccCCCCCC
Q psy2484           7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSH-SPSPL---QPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~~gi---~~ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+=   ++++|+++|++||+|+.+|.+......-.+. .+..+   ...|=+...++|+++.| +.
T Consensus       193 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~-G~  260 (404)
T 2o1b_A          193 PTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMS-GF  260 (404)
T ss_dssp             TTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCG-GG
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCc-hh
Confidence            356654   5889999999999999999975432211111 11111   12234567899999988 64

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=96.35  E-value=0.0077  Score=50.08  Aligned_cols=72  Identities=17%  Similarity=0.186  Sum_probs=55.7

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +|.+..--.-|++++++||++-|.+|.+|.+=-+.|+....--.-++.||-+|..-||.|.=| -- .+++.|+
T Consensus       209 ~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTLrGP-rG-G~Il~~~  280 (490)
T 3ou5_A          209 AGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA-RS-GLIFYRK  280 (490)
T ss_dssp             ECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTTCSC-SC-EEEEEEC
T ss_pred             ECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccccCC-Cc-eEEEecc
Confidence            466666667799999999999999999999755555554443344678999999999999999 54 4555554

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=96.33  E-value=0.002  Score=54.97  Aligned_cols=69  Identities=10%  Similarity=0.053  Sum_probs=48.5

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-C-CCCCc---cCccc---cccCccccCCCCCCCeeEEecCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S-PSPLQ---PGHSV---SLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~-~~gi~---~ADS~---t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      +.+|.+-|+++|+++|+++  +++||.+.++.+.+.+. + ..+++   .+|-+   +...||+|+-+ .-++++..++.
T Consensus       307 n~~G~v~dl~~I~ela~~~--~livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gl-tqgs~i~v~~~  383 (715)
T 3n75_A          307 TYDGLLYNTDFIKKTLDVK--SIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAF-SQASMIHVKGD  383 (715)
T ss_dssp             CTTSEEECHHHHHHHCCCS--EEEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCC-TTCEEEEEESC
T ss_pred             CCCCccCCHHHHHHHhCcC--cEEEccccccccccCCccccccccccCcCCCEEEEEEecccccccCC-CCeeEEEeCch
Confidence            6789999999999999977  48999976555432222 2 22332   37876   88999999987 45566666543

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=96.33  E-value=0.009  Score=44.32  Aligned_cols=66  Identities=12%  Similarity=0.043  Sum_probs=40.1

Q ss_pred             ccccCCC---hHHHHHHHHH------cCceEEeecccchhhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           7 LNGHVDN---VSLLQEICAK------YNLWLHLRGHNLSSLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~------~~lWlHVDga~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      .+|.+=|   +.+|+++|++      ||+|+.+|.+++....-.+.  .......-+-+...++|++++| +...-.+
T Consensus       184 ptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~r~G~~  260 (398)
T 3ele_A          184 PSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLP-GERIGYV  260 (398)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCT-TTCCEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCc-cceeEEE
Confidence            3566655   7788899999      99999999975432211111  1111112234455789999988 6533333

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=96.28  E-value=0.003  Score=48.32  Aligned_cols=60  Identities=7%  Similarity=-0.006  Sum_probs=37.4

Q ss_pred             CCChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      .+++++|+++|++||+||.+|.+..+.....+.   ...|+ ..|-++  .+|+|+-.+-++.++.
T Consensus       221 ~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~-~~diit--~sK~l~~G~~iG~~~~  283 (420)
T 2pb2_A          221 PEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGV-TPDILT--SAKALGGGFPVSAMLT  283 (420)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEE--ECGGGGTTSCCEEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCC-CCCeEE--ecccccCCCceEEEEE
Confidence            479999999999999999999975321111111   01122 267665  4899994332444333

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=96.26  E-value=0.012  Score=44.08  Aligned_cols=61  Identities=10%  Similarity=0.043  Sum_probs=38.8

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCC--CCCCCCc-cCc--cccccCccccCCCCCC
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNS--HSPSPLQ-PGH--SVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~--~~~~gi~-~AD--S~t~d~HKwL~vP~~~   68 (98)
                      .+|.+=|   +++|+++|+++|+|+.+|.++.....-++  ..+..++ ..|  =+...++|++++| +.
T Consensus       175 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-Gl  243 (400)
T 3asa_A          175 PTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFA-GI  243 (400)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTT-TC
T ss_pred             CCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCc-ch
Confidence            3565544   77899999999999999997553211111  1122232 134  2356889999998 75

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=96.20  E-value=0.0066  Score=46.28  Aligned_cols=63  Identities=13%  Similarity=0.014  Sum_probs=40.6

Q ss_pred             ccccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCcc-Ccccc-ccCccccCCCCCC
Q psy2484           5 SSLNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQP-GHSVS-LPLGTWLNLPLSL   68 (98)
Q Consensus         5 tt~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~-ADS~t-~d~HKwL~vP~~~   68 (98)
                      ...+|.+-|   +++|+++|++||+|+.+|.++.....-.+.  ....+.. .+.+. -.++|.++.| +.
T Consensus       201 ~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~-G~  270 (427)
T 3dyd_A          201 SNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVP-GW  270 (427)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCG-GG
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCc-Cc
Confidence            345788878   999999999999999999975432211111  1111111 22332 3899999888 63

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=96.19  E-value=0.013  Score=42.94  Aligned_cols=62  Identities=8%  Similarity=0.103  Sum_probs=41.0

Q ss_pred             ccccccCCChHHHHHHHHHc--CceEEeecccchhhhcCCC--CCCCCccCc--cccccCccccCCCCCC
Q psy2484           5 SSLNGHVDNVSLLQEICAKY--NLWLHLRGHNLSSLALNSH--SPSPLQPGH--SVSLPLGTWLNLPLSL   68 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~--~lWlHVDga~~~al~~~~~--~~~gi~~AD--S~t~d~HKwL~vP~~~   68 (98)
                      ...+|.+-|+++|.++++.+  |+|+++|.+...... .+.  ...-....|  -+...++|+++.| +.
T Consensus       165 ~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-G~  232 (363)
T 3ffh_A          165 NNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLA-SA  232 (363)
T ss_dssp             CTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCS-SC
T ss_pred             CCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCc-hh
Confidence            34588999999999999988  999999997553222 221  111111122  2355778999988 76

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=96.17  E-value=0.0072  Score=45.02  Aligned_cols=60  Identities=12%  Similarity=0.089  Sum_probs=36.8

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeecccc-hhhhcCCC---CCCCCccCccccccCccccCCCCCCCee
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHNL-SSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSP   71 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~-~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~   71 (98)
                      +|.+-|    +++|+++|++||++|++|.+.. ... ..+.   ...++ ..|-+++  .|.++..+.++.+
T Consensus       192 ~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~-~g~~~~~~~~~~-~~d~~t~--sK~~~~G~~~G~~  259 (395)
T 3nx3_A          192 GGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR-SGKFFAYEHAQI-LPDIMTS--AKALGCGLSVGAF  259 (395)
T ss_dssp             TSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT-TSSSSGGGGGTC-CCSEEEE--CGGGTTTSCCEEE
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCc-CCcchhHHhcCC-CCCEEEe--cccccCCCceEEE
Confidence            455555    9999999999999999999632 221 1111   11122 2455554  5988765445433

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=96.17  E-value=0.0029  Score=47.99  Aligned_cols=60  Identities=17%  Similarity=0.097  Sum_probs=37.6

Q ss_pred             ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCcc--CccccccCccccCCCCCC
Q psy2484           7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQP--GHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~--ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+=   .+++|+++|++||+|+.+|.++.....-.+.  .+..++.  .+=+...++|+++ | +.
T Consensus       200 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~-G~  266 (425)
T 1vp4_A          200 PAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-P-GL  266 (425)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-G-GG
T ss_pred             CCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-c-cc
Confidence            356553   4788999999999999999975443211111  1111211  2233558899999 8 75

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=96.16  E-value=0.0046  Score=45.42  Aligned_cols=67  Identities=13%  Similarity=0.003  Sum_probs=40.8

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC-C-CCC-------CccCccccccCccccCCCCCCCeeEEe
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S-PSP-------LQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~-~~g-------i~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      .+|.+   +.+++|+++|++||+|+++|.+++....-.+. . .+.       ....+-+...++|+++.| +...-.+.
T Consensus       166 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-G~r~G~~~  244 (376)
T 3ezs_A          166 PTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP-GLRSGFIA  244 (376)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG-GGCCEEEE
T ss_pred             CcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCc-cceeEEEe
Confidence            35665   34788888899999999999975442211111 0 000       122334566789999988 65433343

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=96.14  E-value=0.0033  Score=46.20  Aligned_cols=64  Identities=8%  Similarity=-0.017  Sum_probs=40.0

Q ss_pred             ccccC---CChHHHHHHHHHc--CceEEeecccchhhhcCCCCCCCCcc--CccccccCccccCCCCCCCeeEEe
Q psy2484           7 LNGHV---DNVSLLQEICAKY--NLWLHLRGHNLSSLALNSHSPSPLQP--GHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~--~lWlHVDga~~~al~~~~~~~~gi~~--ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      .+|.+   +++++|+++|++|  |+|+++|.+++...  .......++.  .+-+...++|+ +.| +...-.+.
T Consensus       169 ptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~-~~~-G~r~G~~~  239 (367)
T 3euc_A          169 PTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFA--QESWMSRLTDFGNLLVMRTVSKL-GLA-GIRLGYVA  239 (367)
T ss_dssp             TTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSS--SCCSGGGGGTCTTEEEEEECCCT-TSC-SCCEEEEE
T ss_pred             CCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhc--ccchHHHHhhCCCEEEEecchhh-ccc-ccCceeee
Confidence            36666   6799999999999  99999999754321  1111111121  22345578999 888 66444443

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=96.12  E-value=0.0052  Score=45.65  Aligned_cols=28  Identities=18%  Similarity=0.122  Sum_probs=25.1

Q ss_pred             ccccCCC----hHHHHHHHHHcCceEEeeccc
Q psy2484           7 LNGHVDN----VSLLQEICAKYNLWLHLRGHN   34 (98)
Q Consensus         7 ~~Ga~D~----l~~i~~ic~~~~lWlHVDga~   34 (98)
                      .+|.+-|    +++|+++|++||++|++|.+.
T Consensus       194 ptG~~~~~~~~l~~i~~l~~~~~~~li~De~~  225 (392)
T 3ruy_A          194 EAGINIPPAGFLKEALEVCKKENVLFVADEIQ  225 (392)
T ss_dssp             TTTSBCCCTTHHHHHHHHHHTTTCEEEEECTT
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEeech
Confidence            4677777    999999999999999999975

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=96.12  E-value=0.015  Score=43.25  Aligned_cols=65  Identities=15%  Similarity=0.128  Sum_probs=40.6

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCCCC----CCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSHSP----SPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~----~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      .+|.+=|   +++|+++|++||+|+++|.+++...  +....    ......+-+...++| ++.| +...-.+.-
T Consensus       192 ptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK-~~~~-G~r~G~~~~  263 (417)
T 3g7q_A          192 PTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPF--PGIIFSEARPLWNPNIILCMSLSK-LGLP-GSRCGIIIA  263 (417)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTT--TCCBCSCCCCCCCTTEEEEEESGG-GTCT-TSCCEEEEC
T ss_pred             CCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccc--ccccccccccCCCCCEEEEEechh-ccCC-CcceEEEEe
Confidence            3666655   9999999999999999999865321  11111    112223444667899 4777 654444443

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=95.96  E-value=0.0065  Score=44.50  Aligned_cols=63  Identities=10%  Similarity=0.052  Sum_probs=38.8

Q ss_pred             cccC---CChHHHHHHHHHcCceEEeecccchhhhcC-CC--CCCCCccCc--cccccCccccCCCCCCCee
Q psy2484           8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALN-SH--SPSPLQPGH--SVSLPLGTWLNLPLSLPSP   71 (98)
Q Consensus         8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~-~~--~~~gi~~AD--S~t~d~HKwL~vP~~~~~~   71 (98)
                      +|.+   +++++|+++|++||+|+++|.+......-. +.  .+..++..+  =+...++|.++.| +...-
T Consensus       163 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-G~r~G  233 (377)
T 3fdb_A          163 LGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIA-GLKCA  233 (377)
T ss_dssp             TTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCG-GGCCE
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCc-chhhe
Confidence            5555   458888888999999999999765422211 11  122222111  2345789999988 65433

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=95.92  E-value=0.0064  Score=45.34  Aligned_cols=60  Identities=13%  Similarity=-0.009  Sum_probs=37.0

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCcc----Cc-cccccCccccCCCCCC
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQP----GH-SVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~----AD-S~t~d~HKwL~vP~~~   68 (98)
                      .+|.+=|   +++|+++|++||+|+++|.+......-.+.  .+..+..    .+ =+...+||+++ | +.
T Consensus       175 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~-G~  244 (397)
T 2zyj_A          175 PTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-P-GL  244 (397)
T ss_dssp             TTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-G-GG
T ss_pred             CCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-c-cc
Confidence            3566544   569999999999999999975443221111  1111211    11 23567999999 8 64

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=95.91  E-value=0.0099  Score=45.00  Aligned_cols=62  Identities=13%  Similarity=0.144  Sum_probs=38.5

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeecccc-hhhhcCCC---CCCCCccCccccccCccccCCC-CCCCeeEE
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHNL-SSLALNSH---SPSPLQPGHSVSLPLGTWLNLP-LSLPSPAR   73 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~-~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP-~~~~~~ll   73 (98)
                      +|.+=|    +++|+++|++||++|++|.+.. ... ....   ...++ ..|-++  +.|+|+-+ +.++.++.
T Consensus       218 tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~-~g~~~~~~~~~~-~~d~~t--~sK~l~~G~~~iG~~~~  288 (429)
T 1s0a_A          218 GGMRMYHPEWLKRIRKICDREGILLIADEIATGFGR-TGKLFACEHAEI-APDILC--LGKALTGGTMTLSATLT  288 (429)
T ss_dssp             TTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTT-TSSSSGGGGGTC-CCSEEE--ECGGGGTSSSCCEEEEE
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcc-cchHHHhhhcCC-CCCEEE--ecccccCCCccceEEEe
Confidence            675555    9999999999999999999643 221 1111   01122 356555  45999854 44554443

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=95.90  E-value=0.0066  Score=45.41  Aligned_cols=65  Identities=11%  Similarity=-0.009  Sum_probs=39.3

Q ss_pred             cccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCc---cCccccccCccccCCCCCCCeeEE
Q psy2484           8 NGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQ---PGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         8 ~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~---~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      +|.+=   ++++|+++|++||+|+++|.++.....-.+.  .+..+.   .-+=+...++|.+++| +...-.+
T Consensus       187 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~-G~r~G~~  259 (422)
T 3fvs_A          187 LGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT-GWKVGWV  259 (422)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCG-GGCCEEE
T ss_pred             CCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCc-cceEEEE
Confidence            55554   6999999999999999999975432211111  111111   1122344678999988 6433333

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=95.80  E-value=0.011  Score=44.13  Aligned_cols=60  Identities=12%  Similarity=0.132  Sum_probs=39.1

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCcc-CccccccCccccCCCCCC
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQP-GHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~-ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+   +++++|+++|++||+|+.+|.+++.. .....  .+..+.. -+=+...++|.+++| +.
T Consensus       176 PtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~-G~  241 (385)
T 1b5p_A          176 PTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHL-LYEGEHFSPGRVAPEHTLTVNGAAKAFAMT-GW  241 (385)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-BSSSCCCCGGGTCTTTEEEEEESTTTTTCG-GG
T ss_pred             CCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCCHHHcCCCCEEEEEechhhcCCc-cc
Confidence            36776   56999999999999999999975532 22111  1111211 122345789999998 73

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=95.66  E-value=0.013  Score=46.27  Aligned_cols=31  Identities=19%  Similarity=0.205  Sum_probs=25.6

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchh
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSS   37 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~a   37 (98)
                      .||.+   +.+.+|.++|++||+|+++|.+++..
T Consensus       249 PtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~  282 (500)
T 3tcm_A          249 PTGQVLAEENQYDIVKFCKNEGLVLLADEVYQEN  282 (500)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEecCcccc
Confidence            36766   67888889999999999999986543

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=95.65  E-value=0.014  Score=42.50  Aligned_cols=67  Identities=4%  Similarity=-0.014  Sum_probs=42.2

Q ss_pred             ccccccCCChHHHHHHHHH--cCceEEeecccchhhhcCCCC---C---CCCccCccccccCccccCCCCCCCeeEE
Q psy2484           5 SSLNGHVDNVSLLQEICAK--YNLWLHLRGHNLSSLALNSHS---P---SPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~--~~lWlHVDga~~~al~~~~~~---~---~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      ...+|.+=|.++|.+|++.  ||+|+++|.+.+... .....   .   .....-+-+...++|++++| +...-.+
T Consensus       151 ~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-G~r~G~~  225 (354)
T 3ly1_A          151 NNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFV-NDPRFRSISPMITQGAENIILLKTFSKIHAMA-GMRVGYA  225 (354)
T ss_dssp             CTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGC-CCTTCCCSHHHHHTTCSSEEEEEESSSTTCCG-GGCCEEE
T ss_pred             CCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhc-cccccCCHHHHhhhcCCCEEEEeeChhhccCh-hhhheee
Confidence            3457888888888888887  999999999765322 22211   1   11102234556789999988 6433333

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=95.50  E-value=0.018  Score=45.21  Aligned_cols=27  Identities=15%  Similarity=0.133  Sum_probs=24.0

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeeccc
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHN   34 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~   34 (98)
                      +|.+=|    +++|+++|++||++|++|.+.
T Consensus       271 ~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~  301 (472)
T 1ohv_A          271 GGDNHASDDFFRKLRDISRKHGCAFLVDEVQ  301 (472)
T ss_dssp             TTCBCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCEEEEeCcc
Confidence            676656    999999999999999999974

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=95.47  E-value=0.018  Score=41.53  Aligned_cols=67  Identities=12%  Similarity=-0.027  Sum_probs=43.6

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      ...+|.+=|+++|.++|+++++++. |.++.... ............+=+...++|++++| +...-++.
T Consensus       145 ~nptG~~~~~~~l~~l~~~~~~~iv-Dea~~~~~-~~~~~~~~~~~~~i~~~S~sK~~g~~-G~r~G~~~  211 (337)
T 3p1t_A          145 SNPTGQALSAGELDQLRQRAGKLLI-DETYVDYS-SFRARGLAYGENELVFRSFSKSYGLA-GLRLGALF  211 (337)
T ss_dssp             CTTTCCCCCHHHHHHHHHHCSEEEE-ECTTGGGS-SCSSSCCCCBTTEEEEEESSSTTCCT-TTCCEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHhCCcEEE-ECCChhhc-cccccccccCCCEEEEeeCchhccCc-chheEEEE
Confidence            3458999999999999999998554 88654311 11111222333455667889999988 76433443

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=95.46  E-value=0.014  Score=44.17  Aligned_cols=52  Identities=13%  Similarity=0.101  Sum_probs=34.4

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccC
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLN   63 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~   63 (98)
                      +|.+-|    +++|+++|++||++|.+|-+.... .....   ...++ ..|-+++  .|.++
T Consensus       212 ~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~~di~t~--sK~~~  270 (427)
T 3fq8_A          212 SGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGV-TPDLTTL--GKIIG  270 (427)
T ss_dssp             TSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTC-CCSEEEE--CGGGG
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCC-CCChhhh--hhhhh
Confidence            566777    999999999999999999965422 11111   11232 2454444  49998

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=95.45  E-value=0.036  Score=42.06  Aligned_cols=59  Identities=8%  Similarity=0.018  Sum_probs=37.1

Q ss_pred             cccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccCc--cccccCccccCCCCCC
Q psy2484           8 NGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPGH--SVSLPLGTWLNLPLSL   68 (98)
Q Consensus         8 ~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~AD--S~t~d~HKwL~vP~~~   68 (98)
                      +|.+=|   +++|+++|++||+|+.+|.++.....-.+.  .+..++..|  =+...++|+++ | +.
T Consensus       204 tG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~-Gl  269 (425)
T 2r2n_A          204 TGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-S-GL  269 (425)
T ss_dssp             TCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-S-TT
T ss_pred             CCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-C-cc
Confidence            465554   559999999999999999976532221111  122232222  23457899998 8 75

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=95.23  E-value=0.023  Score=43.10  Aligned_cols=54  Identities=9%  Similarity=0.048  Sum_probs=35.0

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCC
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      .|.+.|    +++|+++|++||++|++|.+..+. .....   ...|+ ..|-+  ...|.++-.
T Consensus       213 ~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~-~pdi~--t~sK~~~~G  273 (429)
T 4e77_A          213 MNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHV-IPDLT--CLGKIIGGG  273 (429)
T ss_dssp             TSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTC-CCSEE--EEEGGGGTT
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCC-CCCee--eecccccCC
Confidence            466667    999999999999999999965422 21111   11232 23544  445999853

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=95.20  E-value=0.016  Score=42.50  Aligned_cols=62  Identities=8%  Similarity=-0.096  Sum_probs=39.7

Q ss_pred             cccccCCChHHHHHHHH--HcCceEEeecccchhhh--cCCCCCC-----CCccCccccccCccccCCCCCC
Q psy2484           6 SLNGHVDNVSLLQEICA--KYNLWLHLRGHNLSSLA--LNSHSPS-----PLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~--~~~lWlHVDga~~~al~--~~~~~~~-----gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      ..+|.+=|+++|.+|++  ++|+|+++|.+.+....  .......     +....+-+...++|+++.| +.
T Consensus       164 nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~  234 (365)
T 3get_A          164 NPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLG-GL  234 (365)
T ss_dssp             TTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCT-TT
T ss_pred             CCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCc-ch
Confidence            45788888888888888  78999999997543221  1111111     1112234455789999988 64

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=95.16  E-value=0.027  Score=41.55  Aligned_cols=67  Identities=15%  Similarity=0.060  Sum_probs=40.1

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCC---------CccCccccccCccccCCCCCCCeeEEe
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSP---------LQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~g---------i~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      .+|.+   +.+++|+++|++||+|+++|.++.....-.+.....         -...+-+...++|.++.| +...-.+.
T Consensus       180 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~r~G~~~  258 (396)
T 3jtx_A          180 PSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVP-GLRSGFVA  258 (396)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCG-GGCCEEEE
T ss_pred             CCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCc-ccceEEEE
Confidence            35665   346669999999999999999754322111111110         022344566789988888 65433343

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=95.08  E-value=0.019  Score=44.48  Aligned_cols=59  Identities=14%  Similarity=0.088  Sum_probs=36.6

Q ss_pred             cccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccC--ccccccCccccCCCCCC
Q psy2484           8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPG--HSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~A--DS~t~d~HKwL~vP~~~   68 (98)
                      +|.+   +.+++|.++|++||+|+.+|.+++....-.+.  .+..++..  +=....++|+++ | +.
T Consensus       230 tG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~-Gl  295 (448)
T 3aow_A          230 AGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-P-GF  295 (448)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-G-GG
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-c-cc
Confidence            5655   34779999999999999999976543221111  12222211  123445689999 8 74

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=94.84  E-value=0.045  Score=41.53  Aligned_cols=63  Identities=14%  Similarity=0.061  Sum_probs=38.1

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCC-CCCCeeEE
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLP-LSLPSPAR   73 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP-~~~~~~ll   73 (98)
                      +|.+=|    +++|+++|++||++|++|.+........+.   ...++ ..|-++  +.|.++.+ +-++.++.
T Consensus       225 tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~-~~d~~t--~sK~~~~G~~riG~~~~  295 (419)
T 2eo5_A          225 GGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNT-VPDVIT--LAKALGGGIMPIGATIF  295 (419)
T ss_dssp             TTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEE--ECGGGGTTTSCCEEEEE
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCC-CCCEEE--ecccccCCccceEEEEE
Confidence            575444    999999999999999999974321111111   11122 345554  66999854 44554443

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=94.84  E-value=0.034  Score=42.75  Aligned_cols=49  Identities=16%  Similarity=0.176  Sum_probs=32.2

Q ss_pred             CChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccC
Q psy2484          12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLN   63 (98)
Q Consensus        12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~   63 (98)
                      +++++|+++|++||+||.+|.+..+.-...+.   ...|+ ..|-+  .+.|+|+
T Consensus       233 ~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~-~~di~--t~sK~l~  284 (433)
T 1z7d_A          233 NYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNV-KPDVI--LLGKALS  284 (433)
T ss_dssp             THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEE--EECGGGG
T ss_pred             HHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCC-CCCEE--EECcccc
Confidence            48999999999999999999974321111111   01122 35655  4579999

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=94.77  E-value=0.051  Score=41.14  Aligned_cols=29  Identities=10%  Similarity=0.197  Sum_probs=24.7

Q ss_pred             ccccCCC----hHHHHHHHHHcCceEEeecccc
Q psy2484           7 LNGHVDN----VSLLQEICAKYNLWLHLRGHNL   35 (98)
Q Consensus         7 ~~Ga~D~----l~~i~~ic~~~~lWlHVDga~~   35 (98)
                      ..|.+-|    +++|+++|++||+||.+|-+..
T Consensus       213 ~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~  245 (439)
T 3dxv_A          213 DGGLIVPPDGFLRKFADICRAHGILVVCDEVKV  245 (439)
T ss_dssp             TTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence            3567767    9999999999999999998643

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=94.65  E-value=0.051  Score=41.97  Aligned_cols=50  Identities=12%  Similarity=0.078  Sum_probs=32.6

Q ss_pred             CChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCC
Q psy2484          12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNL   64 (98)
Q Consensus        12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~v   64 (98)
                      +++++|+++|++||++|.+|.+..+.....+.   ...|+ ..|-+  .+.|+|+-
T Consensus       244 ~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~-~~Di~--t~sK~l~~  296 (439)
T 2oat_A          244 GYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENV-RPDIV--LLGKALSG  296 (439)
T ss_dssp             THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEE--EECGGGGT
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCC-CCcEE--EecccccC
Confidence            48999999999999999999975321111111   11132 35654  56799984

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=94.60  E-value=0.026  Score=43.61  Aligned_cols=59  Identities=10%  Similarity=0.152  Sum_probs=36.1

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      +|.+=+    +++|+++|++||++|++|....+.....+.   ...++ ..|-++  +.|+|  |  ++.++.
T Consensus       244 ~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~-~~di~t--~sK~l--~--iG~~~~  309 (449)
T 2cjg_A          244 GGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDV-APDIVA--FGKKT--Q--VCGVMA  309 (449)
T ss_dssp             TTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEE--ECGGG--S--SEEEEE
T ss_pred             CCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCC-CceEEE--ecCcc--c--EEEEEE
Confidence            465455    999999999999999999964321111111   01122 356555  46999  7  444433

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=94.58  E-value=0.0093  Score=43.40  Aligned_cols=57  Identities=5%  Similarity=-0.207  Sum_probs=35.9

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      ..+|.+=|     +|+++||+|+++|++..... .+ .   .++.-|-++..+||+++.+ +++.++.
T Consensus       152 nptG~~~~-----~i~~~~~~~li~D~a~~~~~-~~-~---~~~~~di~~~s~sK~~~~~-G~G~~~~  208 (360)
T 1w23_A          152 TIYGTQYQ-----NFPEINHAPLIADMSSDILS-RP-L---KVNQFGMIYAGAQKNLGPS-GVTVVIV  208 (360)
T ss_dssp             TTTTEECS-----SCCCCCSSCEEEECTTTTTS-SC-C---CGGGCSEEEEETTTTTSCT-TCEEEEE
T ss_pred             CCcceecc-----cccccCCceEEEechhhcCC-CC-c---CcccCCEEEEEcccccCCC-CcEEEEE
Confidence            45677622     33348999999999754321 11 1   1222388999999999955 7654443

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=94.50  E-value=0.02  Score=42.35  Aligned_cols=62  Identities=16%  Similarity=-0.064  Sum_probs=38.0

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC---C---CCCCccCccccccCccccCCCCCCC
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---S---PSPLQPGHSVSLPLGTWLNLPLSLP   69 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~---~~gi~~ADS~t~d~HKwL~vP~~~~   69 (98)
                      .+|.+   +++++|+++|++||+|+++|.+++....-.+.   .   ..+...-.=+...++|.+++| +..
T Consensus       185 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~r  255 (397)
T 3fsl_A          185 PTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLY-GER  255 (397)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCG-GGC
T ss_pred             CCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCc-CCC
Confidence            45666   78889999999999999999975322211000   0   111111122334678999988 743

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=93.49  E-value=0.0067  Score=45.26  Aligned_cols=60  Identities=13%  Similarity=0.111  Sum_probs=37.7

Q ss_pred             cccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCc----cCccccccCccccCCCCCC
Q psy2484           8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQ----PGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~----~ADS~t~d~HKwL~vP~~~   68 (98)
                      +|.+   +.+++|+++|++||+|+.+|.++.....-.+.  .+..+.    ..+=+...++|++++| +.
T Consensus       177 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~  245 (392)
T 3b1d_A          177 GGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIA-GT  245 (392)
Confidence            4554   35999999999999999999975433221111  122221    1123455689999987 64

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=94.39  E-value=0.085  Score=40.27  Aligned_cols=62  Identities=13%  Similarity=0.082  Sum_probs=37.2

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeeccc-chhhhcCCC---CCCCCccCccccccCccccCCC-CCCCeeEE
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHN-LSSLALNSH---SPSPLQPGHSVSLPLGTWLNLP-LSLPSPAR   73 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~-~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP-~~~~~~ll   73 (98)
                      +|.+=|    +++|+++|++||+||.+|-.. +.... .+.   ...++ ..|-++  ..|.++.. +-++.++.
T Consensus       228 ~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~-g~~~~~~~~~~-~~di~t--~sK~l~~G~~~ig~~~~  298 (452)
T 3n5m_A          228 GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRT-GKAFGFMNYDV-KPDIIT--MAKGITSAYLPLSATAV  298 (452)
T ss_dssp             TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SSSSGGGGTTC-CCSEEE--ECGGGGTTSSCCEEEEE
T ss_pred             CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcc-cccchhhhcCC-CCCEEe--ecccccCCCcceEEEEE
Confidence            565555    999999999999999999852 22211 111   11233 256665  46888743 22444433

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=94.27  E-value=0.023  Score=42.82  Aligned_cols=61  Identities=8%  Similarity=-0.137  Sum_probs=38.9

Q ss_pred             ccccCCC---hHHHHHHHHH-----cCceEEeecccchhhhcCCC--CCC-CCc--cC----ccccccCccccCCCCCC
Q psy2484           7 LNGHVDN---VSLLQEICAK-----YNLWLHLRGHNLSSLALNSH--SPS-PLQ--PG----HSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~-----~~lWlHVDga~~~al~~~~~--~~~-gi~--~A----DS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+=|   +++|+++|++     ||+|+.+|.++.....-.+.  .+. .+.  ..    +=+...++|+++.| +.
T Consensus       201 ptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~  278 (430)
T 2x5f_A          201 PTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAW-GF  278 (430)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCG-GG
T ss_pred             CCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCC-CC
Confidence            3677666   8999999999     99999999975432211110  111 111  11    22356789999988 74

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=93.97  E-value=0.046  Score=43.26  Aligned_cols=30  Identities=13%  Similarity=0.124  Sum_probs=25.5

Q ss_pred             cccC---CChHHHHHHHHHcCceEEeecccchh
Q psy2484           8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSS   37 (98)
Q Consensus         8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~a   37 (98)
                      ||.+   +++++|.++|++||+|+.+|-+++..
T Consensus       248 TG~v~s~~~l~~i~~la~~~~~~li~De~y~~~  280 (498)
T 3ihj_A          248 TGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDN  280 (498)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC
T ss_pred             CCCcCCHHHHHHHHHHHHHcCcEEEEEcCcccc
Confidence            6666   77899999999999999999986543

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=93.85  E-value=0.12  Score=39.81  Aligned_cols=58  Identities=9%  Similarity=0.036  Sum_probs=34.8

Q ss_pred             hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484          14 VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus        14 l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      +++|+++|++||++|.+|-...+.....+.   ...|+ ..|-+++  .|.|+..+-++.++..
T Consensus       250 l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~-~pdi~t~--sK~l~~G~~iG~v~~~  310 (451)
T 3oks_A          250 LPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGI-DPDLIVT--AKGIAGGLPLSAVTGR  310 (451)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEE--CGGGGTTSSCEEEEEE
T ss_pred             HHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCC-CCCeeee--hhhhhCCcceEEEEEC
Confidence            999999999999999999863221111111   11132 3555544  5998764335544443

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=93.63  E-value=0.049  Score=41.33  Aligned_cols=60  Identities=13%  Similarity=0.044  Sum_probs=37.4

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCCCCCCee
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSP   71 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~   71 (98)
                      .|.+-|    +++|+++|++||++|++|-+.... .....   ...|+ ..|-++  +.|.++..+-++.+
T Consensus       213 ~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~~di~t--~sK~~~~G~~iG~~  279 (429)
T 3k28_A          213 MGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGV-TPDLTC--LGKVIGGGLPVGAY  279 (429)
T ss_dssp             TSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTC-CCSEEE--ECGGGGTTSCCEEE
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCC-CCceeh--hhhhhcCCCCeEEE
Confidence            466667    999999999999999999975322 11111   01122 245454  46999854334433

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=93.59  E-value=0.035  Score=41.95  Aligned_cols=61  Identities=11%  Similarity=-0.123  Sum_probs=38.2

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCC-C------CCCCCccCccccccCccccCCCCCCC
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNS-H------SPSPLQPGHSVSLPLGTWLNLPLSLP   69 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~-~------~~~gi~~ADS~t~d~HKwL~vP~~~~   69 (98)
                      -+|.+   +.+++|+++|++||+|+.+|.+++... ... .      ...+...-+=+...++|.+++| +..
T Consensus       207 PtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~R  277 (420)
T 4f4e_A          207 PTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFG-ESIEADAAAVRLFAAANLNVFVSSSFSKSFSLY-GER  277 (420)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSS-SCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCG-GGC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCcEEEEcccccccc-CCcchhhHHHHHHHhcCCCEEEEEeCCccCcCc-CCC
Confidence            35665   778999999999999999999753222 111 0      0111111122344678999988 743

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=93.58  E-value=0.053  Score=41.03  Aligned_cols=60  Identities=10%  Similarity=0.011  Sum_probs=37.9

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCCC---CCCCccCccccccCccccCCCCCCCee
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSHS---PSPLQPGHSVSLPLGTWLNLPLSLPSP   71 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~~---~~gi~~ADS~t~d~HKwL~vP~~~~~~   71 (98)
                      .|.+-|    +++|+++|++||++|++|.+.... .....-   ..++ ..|-++  ..|.++-++-++.+
T Consensus       215 ~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~-~~di~t--~sK~~~~G~~iG~~  281 (434)
T 3l44_A          215 FGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGV-TPDLTA--LGKVIGGGLPIGAY  281 (434)
T ss_dssp             TSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTC-CCSEEE--EEGGGGTTSSCEEE
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCC-CCCeee--hhhhhcCCcCeeeE
Confidence            466666    999999999999999999975432 211110   1122 245444  46998854435544

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=93.40  E-value=0.04  Score=41.07  Aligned_cols=61  Identities=8%  Similarity=0.033  Sum_probs=38.6

Q ss_pred             cccC---CChHHHHHHHHHcCceEEeecccchhhhcC---CC-CCCCC-ccCc--cccccCccccCCCCCCC
Q psy2484           8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALN---SH-SPSPL-QPGH--SVSLPLGTWLNLPLSLP   69 (98)
Q Consensus         8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~---~~-~~~gi-~~AD--S~t~d~HKwL~vP~~~~   69 (98)
                      +|.+   +++++|+++|++||+|+++|.++.....-.   +. .+..+ +..|  =+...++|.++.| +..
T Consensus       196 tG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~r  266 (412)
T 1ajs_A          196 TGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLY-NER  266 (412)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCG-GGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCC-Ccc
Confidence            5665   678899999999999999999743221110   11 01111 1234  3366889999987 753

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=93.24  E-value=0.033  Score=42.62  Aligned_cols=62  Identities=11%  Similarity=-0.084  Sum_probs=38.8

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC-C--CCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH-S--PSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~--~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      +|.+=|    +++|+++|++||++|.+|....+. ...+. .  ..|+ ..|-+  .+.|+|+..+-.+.++.
T Consensus       214 tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~--s~sK~l~~G~~~G~v~~  282 (453)
T 2cy8_A          214 FGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDV-QPDLT--CLAKASAGGLPGGILGG  282 (453)
T ss_dssp             HHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTC-CCSEE--EEEGGGGTTSSCEEEEE
T ss_pred             CCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCC-CCcEE--EEChhhhCCcceEEEec
Confidence            576655    999999999999999999975432 22211 0  1122 24544  46799986433444433

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=93.10  E-value=0.22  Score=36.72  Aligned_cols=60  Identities=15%  Similarity=0.032  Sum_probs=34.3

Q ss_pred             ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC-CCCCCccCccccccCccccCCCCCC
Q psy2484           7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH-SPSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+=|   +.+|+++|+ +|+|+.+|.++....--... .+......+=+...++|++++| +.
T Consensus       158 ptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-G~  221 (356)
T 1fg7_A          158 PTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALA-GL  221 (356)
T ss_dssp             TTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCG-GG
T ss_pred             CCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCc-hh
Confidence            3676655   455555666 99999999975432210110 1111111233456889999988 74

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=93.07  E-value=0.069  Score=40.30  Aligned_cols=27  Identities=7%  Similarity=0.179  Sum_probs=22.6

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeeccc
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHN   34 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~   34 (98)
                      +|.+-+    +++|+++|++||++|++|-..
T Consensus       204 ~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~  234 (430)
T 3i4j_A          204 DAALAPAPGYYERVRDICDEAGIIFIADEVM  234 (430)
T ss_dssp             GTTCCCCTTHHHHHHHHHHHHTCEEEEECTT
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence            455445    999999999999999999853

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=92.91  E-value=0.077  Score=40.20  Aligned_cols=62  Identities=16%  Similarity=0.142  Sum_probs=39.1

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC-C--CCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH-S--PSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~--~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      +|.+-|    +++|+++|++||++|.+|.+..+. ...+. .  ..|+ ..|-+  ..+|+|+..+-.+.++.
T Consensus       216 ~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~--s~sK~l~~G~~~G~v~~  284 (434)
T 2epj_A          216 AGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNI-EGDII--VLGKIIGGGFPVGAVAG  284 (434)
T ss_dssp             SSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTC-CCSEE--EEEGGGGTTSSCEEEEE
T ss_pred             CCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCC-CCCee--eecchhcCCcceeeeee
Confidence            687777    999999999999999999975432 22111 0  1122 25644  45799987322444433

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=92.87  E-value=0.14  Score=37.26  Aligned_cols=60  Identities=13%  Similarity=0.010  Sum_probs=39.7

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-CCCCCccCccccccCccccCCCCCC
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-SPSPLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~~gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      ..+|.+=|.++|.+|++..| |+++|.+..... .... ..-+....+=+...++|+++.| +.
T Consensus       149 nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~g~~-G~  209 (335)
T 1uu1_A          149 NPTGHVFEREEIERILKTGA-FVALDEAYYEFH-GESYVDFLKKYENLAVIRTFSKAFSLA-AQ  209 (335)
T ss_dssp             TTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHH-CCCCGGGGGTCSSEEEEEESTTTTTCG-GG
T ss_pred             CCCCCCCCHHHHHHHHHhCC-EEEEECcchhhc-chhHHHHhhhCCCEEEEecchhhcCCc-cc
Confidence            35788999999999999989 999999754321 1111 1101112234556889999988 74

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=92.55  E-value=0.2  Score=38.29  Aligned_cols=20  Identities=15%  Similarity=0.514  Sum_probs=19.2

Q ss_pred             hHHHHHHHHHcCceEEeecc
Q psy2484          14 VSLLQEICAKYNLWLHLRGH   33 (98)
Q Consensus        14 l~~i~~ic~~~~lWlHVDga   33 (98)
                      +++|+++|++||+||.+|-.
T Consensus       234 l~~l~~l~~~~~~~lI~DEv  253 (448)
T 3dod_A          234 LAGVRELCTTYDVLMIVDEV  253 (448)
T ss_dssp             HHHHHHHHHHTTCEEEEECT
T ss_pred             HHHHHHHHHHhCCEEEEecc
Confidence            99999999999999999985

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=92.47  E-value=0.036  Score=44.31  Aligned_cols=59  Identities=5%  Similarity=-0.022  Sum_probs=36.6

Q ss_pred             cccC---CChHHHHHHHH-HcCceEEeecccchhhhcCCCCCCC-CccCccccccCccccCCCCCC
Q psy2484           8 NGHV---DNVSLLQEICA-KYNLWLHLRGHNLSSLALNSHSPSP-LQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         8 ~Ga~---D~l~~i~~ic~-~~~lWlHVDga~~~al~~~~~~~~g-i~~ADS~t~d~HKwL~vP~~~   68 (98)
                      +|.+   +.+.+|+++|+ +||+|+.+|.+++... .....+.. ...-+=+...++|.++.| +.
T Consensus       257 tG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~~-G~  320 (533)
T 3f6t_A          257 TSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFV-PNFKSIYSVVPYNTMLVYSYSKLFGCT-GW  320 (533)
T ss_dssp             TCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGS-TTCCCHHHHSGGGEEEEEESHHHHTCG-GG
T ss_pred             CccccCHHHHHHHHHHHHhCCCCEEEEcCCccccc-cCccCHhhcCCCCEEEEecCcccCCCc-cc
Confidence            5655   45668889998 6899999999765322 11111111 111224556788999988 73

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=92.38  E-value=0.1  Score=39.70  Aligned_cols=53  Identities=13%  Similarity=0.059  Sum_probs=35.2

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeeccc-chhhhcCCC---CCCCCccCccccccCccccCC
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHN-LSSLALNSH---SPSPLQPGHSVSLPLGTWLNL   64 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~-~~al~~~~~---~~~gi~~ADS~t~d~HKwL~v   64 (98)
                      +|.+-|    +++|+++|++||++|.+|.+. +.... .+.   ...++ ..|-+  .+.|+|+-
T Consensus       232 tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~-g~~~~~~~~~~-~~di~--s~sK~l~~  292 (449)
T 3a8u_X          232 AGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRT-GSMFGADSFGV-TPDLM--CIAKQVTN  292 (449)
T ss_dssp             TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SSSSHHHHHTC-CCSEE--EECGGGGT
T ss_pred             CCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc-CcchhhhhcCC-CCCEE--EEcccccC
Confidence            687667    999999999999999999975 33221 111   11122 24644  45699983

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=92.38  E-value=0.073  Score=39.76  Aligned_cols=28  Identities=11%  Similarity=-0.044  Sum_probs=23.5

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeeccc
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHN   34 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~   34 (98)
                      .+|.+   +++++|+++|++||+|+.+|.++
T Consensus       188 PtG~~~~~~~l~~l~~~~~~~~~~li~De~~  218 (412)
T 1yaa_A          188 PTGLDPTSEQWVQIVDAIASKNHIALFDTAY  218 (412)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEEEeccc
Confidence            35666   56888999999999999999975

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=92.23  E-value=0.074  Score=39.19  Aligned_cols=60  Identities=7%  Similarity=-0.123  Sum_probs=36.7

Q ss_pred             cccC---CChHHHHHHHHHcCceEEeecccchhhhcC--CC-CCCCC-ccCc--cccccCccccCCCCCC
Q psy2484           8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALN--SH-SPSPL-QPGH--SVSLPLGTWLNLPLSL   68 (98)
Q Consensus         8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~--~~-~~~gi-~~AD--S~t~d~HKwL~vP~~~   68 (98)
                      +|.+   +++++|+++|++||+|+.+|.++.....-.  +. ....+ ...|  =+....+|.+++| +.
T Consensus       185 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~  253 (396)
T 2q7w_A          185 TGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLY-NE  253 (396)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG-GG
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccccc-cc
Confidence            4554   567889999999999999999743221100  00 01101 0112  3356789999988 75

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=91.89  E-value=0.085  Score=38.93  Aligned_cols=61  Identities=7%  Similarity=-0.120  Sum_probs=36.5

Q ss_pred             cccC---CChHHHHHHHHHcCceEEeecccchhhhcC--CC-CCCCC-c-cCccc-cccCccccCCCCCCC
Q psy2484           8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALN--SH-SPSPL-Q-PGHSV-SLPLGTWLNLPLSLP   69 (98)
Q Consensus         8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~--~~-~~~gi-~-~ADS~-t~d~HKwL~vP~~~~   69 (98)
                      +|.+   +.+++|+++|++||+|+.+|.++.....-.  +. ....+ + ..|.+ ...++|++++| +..
T Consensus       182 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-G~r  251 (394)
T 2ay1_A          182 TGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIY-RER  251 (394)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCG-GGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCc-CCc
Confidence            5555   457789999999999999999643211100  00 00001 1 12333 44789999988 763

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=91.35  E-value=0.092  Score=38.95  Aligned_cols=58  Identities=10%  Similarity=-0.068  Sum_probs=36.4

Q ss_pred             cCCChHHHHHHHHHcCceEEeecccchhhhcCC---C-CCC---CCccCccccccCccccCCCCCC
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNS---H-SPS---PLQPGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~---~-~~~---gi~~ADS~t~d~HKwL~vP~~~   68 (98)
                      ..+++++|+++|++||+|+.+|-++.....-+.   . .+.   ....-.=+...++|.+++| +.
T Consensus       193 ~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~-G~  257 (401)
T 7aat_A          193 RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLY-GE  257 (401)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG-GG
T ss_pred             CHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccc-cC
Confidence            557799999999999999999997533221110   0 000   0011112346789999999 74

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=91.25  E-value=0.16  Score=39.13  Aligned_cols=52  Identities=13%  Similarity=0.069  Sum_probs=32.6

Q ss_pred             ccCCC----hHHHHHHHHHcCceEEeeccc-chhhhcCCC---CCCCCccCccccccCccccCC
Q psy2484           9 GHVDN----VSLLQEICAKYNLWLHLRGHN-LSSLALNSH---SPSPLQPGHSVSLPLGTWLNL   64 (98)
Q Consensus         9 Ga~D~----l~~i~~ic~~~~lWlHVDga~-~~al~~~~~---~~~gi~~ADS~t~d~HKwL~v   64 (98)
                      |.+-|    +++|+++|++||++|.+|-.. |... ..+.   ...|+ ..|-+++  .|.|+-
T Consensus       233 G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr-~G~~~~~~~~~~-~pdi~t~--sK~l~g  292 (459)
T 4a6r_A          233 GVIVPPATYWPEIERICRKYDVLLVADEVICGFGR-TGEWFGHQHFGF-QPDLFTA--AKGLSS  292 (459)
T ss_dssp             TCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT-TSSSSHHHHHTC-CCSEEEE--CGGGGT
T ss_pred             CcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc-ccccchHhhcCC-CCCeeeh--hhhhcC
Confidence            44555    999999999999999999753 2211 1111   01122 3566664  598873

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=91.22  E-value=0.096  Score=38.12  Aligned_cols=60  Identities=10%  Similarity=0.124  Sum_probs=39.0

Q ss_pred             ccccCCChHHHHHHHHHcC-ceEEeecccchhhhcCCC-CCCCCc--cCccccccCccccCCCCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYN-LWLHLRGHNLSSLALNSH-SPSPLQ--PGHSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~-lWlHVDga~~~al~~~~~-~~~gi~--~ADS~t~d~HKwL~vP~~~   68 (98)
                      .+|.+=|+++|.+|++.++ .|+.+|.++... ..... ....++  ..+-+...++|++++| +.
T Consensus       141 ptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~-G~  204 (350)
T 3fkd_A          141 PDGRLLQRTEILRLLNDHPDTTFVLDQSYVSF-TTEEVIRPADIKGRKNLVMVYSFSHAYGIP-GL  204 (350)
T ss_dssp             TTCCCCCHHHHHHHHHHCTTSEEEEECTTTTS-CSSCCCCGGGGTTCSSEEEEEESHHHHSCG-GG
T ss_pred             CcCCCCCHHHHHHHHHhCCCCEEEEECchhhh-ccCcchhhHHhhcCCCEEEEecCchhccCc-ch
Confidence            4788889999999999876 799999976432 11111 111111  1223455789999988 64

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=91.18  E-value=0.099  Score=40.24  Aligned_cols=57  Identities=7%  Similarity=-0.108  Sum_probs=34.6

Q ss_pred             CCChHHHHHHHHHcCceEEeecccchhhhcC---C-CCCCCC--ccCcc-ccccCccccCCCCCC
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGHNLSSLALN---S-HSPSPL--QPGHS-VSLPLGTWLNLPLSL   68 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga~~~al~~~---~-~~~~gi--~~ADS-~t~d~HKwL~vP~~~   68 (98)
                      .+++++|+++|++||+|+++|.++.....-+   + ..+..+  ...+- +...++|.+++| +.
T Consensus       221 ~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-G~  284 (448)
T 3meb_A          221 EAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLY-GE  284 (448)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCG-GG
T ss_pred             HHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCc-cc
Confidence            3567889999999999999999754322111   0 000000  01122 256789999988 73

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=91.10  E-value=0.12  Score=38.88  Aligned_cols=62  Identities=15%  Similarity=0.195  Sum_probs=37.1

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeecccc-hhhhcCCC-C--CCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHNL-SSLALNSH-S--PSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~-~al~~~~~-~--~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      +|.+=|    +++|+++|++||++|++|-... .... .+. .  ..++ ..|-+  .+.|+|+..+-++.++.
T Consensus       216 ~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~-g~~~~~~~~~~-~~di~--s~sK~~~~G~~ig~~~~  285 (433)
T 1zod_A          216 GGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT-GTMFACQRDGV-TPDIL--TLSKTLGAGLPLAAIVT  285 (433)
T ss_dssp             TTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SSSSTHHHHTC-CCSEE--EECHHHHTTSSCEEEEE
T ss_pred             CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcC-chHhHHhhcCC-CCCEE--EecccccCCCCeeEEEE
Confidence            565444    9999999999999999999643 2211 111 0  1122 23433  45699986543544433

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=91.01  E-value=0.12  Score=38.65  Aligned_cols=61  Identities=11%  Similarity=0.003  Sum_probs=34.3

Q ss_pred             cccccCCChH---HHHHHHH------HcCceEEeecccchhhhcCCC-------CCCCCccCcc---ccccCccccCCCC
Q psy2484           6 SLNGHVDNVS---LLQEICA------KYNLWLHLRGHNLSSLALNSH-------SPSPLQPGHS---VSLPLGTWLNLPL   66 (98)
Q Consensus         6 t~~Ga~D~l~---~i~~ic~------~~~lWlHVDga~~~al~~~~~-------~~~gi~~ADS---~t~d~HKwL~vP~   66 (98)
                      ..+|.+=|.+   +|+++|+      +||+|+.+|.++.... ....       ...++. .|-   +...++|.+++| 
T Consensus       191 NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~~~~~-~~~~~i~~~S~sK~~~~~-  267 (418)
T 3rq1_A          191 NPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYS-GEKDEVRAFFNKFSHLP-KEILTCVCYSLSKGFTMY-  267 (418)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGS-SCHHHHHGGGGGGTTCC-TTEEEEEEEESTTTTTCC-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccc-CChHHHHHHHHHHHhcC-CCceEEEEEeCCCCCcCc-
Confidence            3467666654   5555665      8999999999753221 1110       011111 121   223789999988 


Q ss_pred             CCC
Q psy2484          67 SLP   69 (98)
Q Consensus        67 ~~~   69 (98)
                      +..
T Consensus       268 G~r  270 (418)
T 3rq1_A          268 GQR  270 (418)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            653

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=90.54  E-value=0.3  Score=36.75  Aligned_cols=67  Identities=6%  Similarity=-0.133  Sum_probs=38.9

Q ss_pred             ccccCCChH---HHHHHH-HHcCceEEeecccchhhhcCCC--CCC--C------CccCccccccCccccCCCCCCCeeE
Q psy2484           7 LNGHVDNVS---LLQEIC-AKYNLWLHLRGHNLSSLALNSH--SPS--P------LQPGHSVSLPLGTWLNLPLSLPSPA   72 (98)
Q Consensus         7 ~~Ga~D~l~---~i~~ic-~~~~lWlHVDga~~~al~~~~~--~~~--g------i~~ADS~t~d~HKwL~vP~~~~~~l   72 (98)
                      -+|.+=|.+   +|+++| ++||+|+++|.+++....-.+.  ..+  +      ...-+=+...++|+ +.| +...-+
T Consensus       193 PtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~-G~r~G~  270 (427)
T 3ppl_A          193 PTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLA-GAGVSF  270 (427)
T ss_dssp             TTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT-SCT-TSSCEE
T ss_pred             CCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc-cCc-CccEEE
Confidence            466664554   899999 9999999999976543222211  011  1      11122334578899 666 654444


Q ss_pred             Eec
Q psy2484          73 RTQ   75 (98)
Q Consensus        73 l~r   75 (98)
                      +.-
T Consensus       271 ~~~  273 (427)
T 3ppl_A          271 FLT  273 (427)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            443

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=90.30  E-value=0.15  Score=38.16  Aligned_cols=60  Identities=7%  Similarity=-0.062  Sum_probs=35.9

Q ss_pred             cccC---CChHHHHHHHHHcCceEEeecccchhhhcC---CC-C---CCCCccCcccc-ccCccccCCCCCCC
Q psy2484           8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALN---SH-S---PSPLQPGHSVS-LPLGTWLNLPLSLP   69 (98)
Q Consensus         8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~---~~-~---~~gi~~ADS~t-~d~HKwL~vP~~~~   69 (98)
                      +|.+   +.+++|+++|++||+|+.+|-++.....-+   +. .   ..+. ..+.+. -.+.|.+++| +..
T Consensus       196 tG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~g~~-G~r  266 (409)
T 4eu1_A          196 TGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDM-VPNLIVAQSFSKNFGLY-GHR  266 (409)
T ss_dssp             TCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTT-SSCCEEEEECTTTSSCG-GGC
T ss_pred             CCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhh-CCcEEEEecCcccccCc-cCC
Confidence            4554   457779999999999999999754322111   00 0   1011 123332 3677999998 753

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=89.45  E-value=0.24  Score=38.30  Aligned_cols=58  Identities=5%  Similarity=-0.005  Sum_probs=34.1

Q ss_pred             hHHHHHHHHHcCceEEeecccchhhhcCCC-C--CCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484          14 VSLLQEICAKYNLWLHLRGHNLSSLALNSH-S--PSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus        14 l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~--~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      +++|+++|++||++|.+|-.........+. .  ..|+ ..|-++  ..|.++..+-++.++..
T Consensus       248 l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~-~pdi~t--~sK~~~~G~~~G~~~~~  308 (453)
T 4ffc_A          248 LATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGI-VPDIVT--MAKGIAGGMPLSAVTGR  308 (453)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEE--ECGGGGTTSSCEEEEEE
T ss_pred             HHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCC-CcchHh--hhhhhcCCcCeEEEEEC
Confidence            999999999999999999853221111111 0  1122 245555  45988654335544443

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=88.77  E-value=0.24  Score=38.56  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=19.8

Q ss_pred             hHHHHHHHHHcCceEEeeccc
Q psy2484          14 VSLLQEICAKYNLWLHLRGHN   34 (98)
Q Consensus        14 l~~i~~ic~~~~lWlHVDga~   34 (98)
                      +++|+++|++||++|.+|-+.
T Consensus       257 l~~l~~l~~~~gillI~DEv~  277 (457)
T 3tfu_A          257 LHDLRDICRRYEVLLIFDEIA  277 (457)
T ss_dssp             HHHHHHHHHHHTCEEEEECTT
T ss_pred             HHHHHHHHHHcCCEEEEEcCc
Confidence            999999999999999999963

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=88.72  E-value=0.32  Score=38.06  Aligned_cols=47  Identities=6%  Similarity=-0.017  Sum_probs=30.5

Q ss_pred             hHHHHHHHHHcCceEEeeccc-chhhhcCCC---C-CCCCccCccccccCccccCC
Q psy2484          14 VSLLQEICAKYNLWLHLRGHN-LSSLALNSH---S-PSPLQPGHSVSLPLGTWLNL   64 (98)
Q Consensus        14 l~~i~~ic~~~~lWlHVDga~-~~al~~~~~---~-~~gi~~ADS~t~d~HKwL~v   64 (98)
                      |++|+++|++||++|.+|-.. |.... .+.   . ..|+ ..|-+++  .|.|+-
T Consensus       244 L~~l~~lc~~~gillI~DEv~~g~gr~-G~~~~~~~~~~v-~pdi~t~--sK~l~~  295 (476)
T 3i5t_A          244 HARFKAICEKHDILYISDEVVTGFGRC-GEWFASEKVFGV-VPDIITF--AKGVTS  295 (476)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTTTTT-SSSCHHHHTTCC-CCSEEEE--CGGGGT
T ss_pred             HHHHHHHHHHcCCEEEEEecccCCccc-cCceeeecccCC-Ccchhhh--hhhhcC
Confidence            999999999999999999742 22211 111   1 2233 3576664  588873

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=88.56  E-value=0.34  Score=37.24  Aligned_cols=47  Identities=13%  Similarity=0.087  Sum_probs=30.1

Q ss_pred             hHHHHHHHHHcCceEEeecccc-hhhhcCCC---CCCCCccCccccccCccccCC
Q psy2484          14 VSLLQEICAKYNLWLHLRGHNL-SSLALNSH---SPSPLQPGHSVSLPLGTWLNL   64 (98)
Q Consensus        14 l~~i~~ic~~~~lWlHVDga~~-~al~~~~~---~~~gi~~ADS~t~d~HKwL~v   64 (98)
                      +++|+++|++||++|.+|-... ... ..+.   ...|+ ..|-+++  .|.|+-
T Consensus       244 l~~l~~l~~~~~~llI~DEv~~g~gr-~g~~~~~~~~~~-~pdi~t~--sK~l~g  294 (460)
T 3gju_A          244 WEKIQAVLKKYDVLLVADEVVTGFGR-LGTMFGSDHYGI-KPDLITI--AKGLTS  294 (460)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTTTT-TSSSCHHHHHTC-CCSEEEE--CGGGTT
T ss_pred             HHHHHHHHHHcCCEEEEeccccCCCc-ccccchHhhcCC-CCCeeee--ehhhcC
Confidence            9999999999999999998532 221 1111   01133 3565554  598865

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=88.39  E-value=0.35  Score=37.90  Aligned_cols=52  Identities=17%  Similarity=0.181  Sum_probs=33.2

Q ss_pred             ccCCC----hHHHHHHHHHcCceEEeeccc-chhhhcCCC---CCCCCccCccccccCccccCC
Q psy2484           9 GHVDN----VSLLQEICAKYNLWLHLRGHN-LSSLALNSH---SPSPLQPGHSVSLPLGTWLNL   64 (98)
Q Consensus         9 Ga~D~----l~~i~~ic~~~~lWlHVDga~-~~al~~~~~---~~~gi~~ADS~t~d~HKwL~v   64 (98)
                      |.+-|    |++|+++|++||++|.+|-.. |... ..+.   ...|+ ..|-+|+  .|.|+-
T Consensus       237 G~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr-~G~~~a~~~~~v-~pdi~t~--sK~l~g  296 (472)
T 3hmu_A          237 GVIVAPDSYWPEIQRICDKYDILLIADEVICGFGR-TGNWFGTQTMGI-RPHIMTI--AKGLSS  296 (472)
T ss_dssp             TCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT-TSSSCHHHHHTC-CCSEEEE--CGGGTT
T ss_pred             CcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcc-cCccchhHHhCC-CCceeee--chhhhc
Confidence            55555    999999999999999999742 2221 1111   01233 3566664  599874

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=86.21  E-value=0.63  Score=35.00  Aligned_cols=59  Identities=20%  Similarity=0.092  Sum_probs=37.1

Q ss_pred             cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC-C--CCCCccCccccccCccccCCCCCCCee
Q psy2484           8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH-S--PSPLQPGHSVSLPLGTWLNLPLSLPSP   71 (98)
Q Consensus         8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~--~~gi~~ADS~t~d~HKwL~vP~~~~~~   71 (98)
                      +|.+=|    +++|+++ ++||++|-+|-+..+.. ..+. .  ..|+ ..|-+  .+.|+|+..+-.+.+
T Consensus       212 ~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~-~g~~~~~~~~~~-~~di~--s~sK~l~~G~~~G~~  277 (424)
T 2e7u_A          212 AGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFR-LAFGGATELLGL-KPDLV--TLGKILGGGLPAAAY  277 (424)
T ss_dssp             TSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTT-SSTTHHHHHHTC-CCSEE--EECGGGGTTSSCEEE
T ss_pred             CCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccc-cchhHHHHHhCC-Ccchh--hhhhhhhCCcceEEE
Confidence            676656    9999999 99999999999754322 2211 0  1122 24543  568999863224433

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=84.21  E-value=0.25  Score=36.91  Aligned_cols=29  Identities=10%  Similarity=0.024  Sum_probs=22.9

Q ss_pred             ccccCCChH---HHHHHH-HHcCceEEeecccc
Q psy2484           7 LNGHVDNVS---LLQEIC-AKYNLWLHLRGHNL   35 (98)
Q Consensus         7 ~~Ga~D~l~---~i~~ic-~~~~lWlHVDga~~   35 (98)
                      -+|.+=|.+   +|+++| ++||+|+++|.++.
T Consensus       185 PtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~  217 (423)
T 3ez1_A          185 PGGETISLEKARRLAGLQAAAPDFTIFADDAYR  217 (423)
T ss_dssp             TTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTS
T ss_pred             CCCcCCCHHHHHHHHHHHHhccCCEEEEECCcc
Confidence            356664554   888899 99999999999765

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=82.05  E-value=0.8  Score=36.71  Aligned_cols=58  Identities=12%  Similarity=0.078  Sum_probs=33.8

Q ss_pred             hHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484          14 VSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus        14 l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      |++|+++|++||++|-+|=.-.+ +.-.-.  ..-|+ .+|=+|+  .|.|+=-+-.+++...+
T Consensus       243 L~~lr~lc~~~g~lLI~DEV~tG-R~G~~~a~e~~gv-~PDi~t~--gK~lggG~Piga~~~~~  302 (454)
T 4ao9_A          243 LQALRESATQVGALLVFDEVMTS-RLAPHGLANKLGI-RSDLTTL--GKYIGGGMSFGAFGGRA  302 (454)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTGG-GGSTTCHHHHHTC-CCSEEEE--EGGGGTTSSCEEEEECH
T ss_pred             HHHHHHHHhhcCCEEEEECCCcC-CCccccchhccCC-CCcEEEe--ccccCCCCcceeeeeHH
Confidence            99999999999999999974211 111111  11245 3676654  57664332244444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.93
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.81
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.48
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.37
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	98.89
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	98.69
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	98.63
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	98.56
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	98.41
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	98.31
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	98.26
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	98.19
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	97.99
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	97.96
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	97.67
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	97.64
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	97.57
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	97.47
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	97.26
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	97.08
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	97.02
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	97.01
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	97.0
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	96.98
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	96.82
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	96.74
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	96.57
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	96.18
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	95.45
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	95.21
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	94.85
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	94.0
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	93.7
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	92.88
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	91.63
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	90.66
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	90.27
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	89.81
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	88.3
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	86.87
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	86.02
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	85.69
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	84.98
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	82.99

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.93  E-value=1.3e-27  Score=191.40  Aligned_cols=76  Identities=17%  Similarity=0.310  Sum_probs=65.2

Q ss_pred             CCCcccccccCCChHHHHHHHHHcCceEEeecccc-hhhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           1 MEIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNL-SSLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         1 ~taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~-~al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      .|+|||.+|++|||++|++||++||+||||||++| +++.+++.  +++|+++||||++|+||||++|+.|+ ++++|++
T Consensus       241 ataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g-~~l~r~~  319 (476)
T d1js3a_         241 ATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCS-AMWVKRR  319 (476)
T ss_dssp             EEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCE-EEEESCH
T ss_pred             ecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcce-eecccch
Confidence            37999999999999999999999999999999855 45555555  48999999999999999999997665 6666653

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=8.2e-21  Score=150.28  Aligned_cols=76  Identities=12%  Similarity=0.000  Sum_probs=61.8

Q ss_pred             CCCcccccccCCChHHHHHHH------HHcCceEEeecc-cchhh-hcCCC--CCCCCccCccccccCccccCCCCCCCe
Q psy2484           1 MEIGSSLNGHVDNVSLLQEIC------AKYNLWLHLRGH-NLSSL-ALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPS   70 (98)
Q Consensus         1 ~taGtt~~Ga~D~l~~i~~ic------~~~~lWlHVDga-~~~al-~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~   70 (98)
                      .|+|||.+|++||+.+|++||      +++|+||||||+ +|+.+ ++.+.  ...|+++|||+++|+|||+++|++|+ 
T Consensus       205 ~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g-  283 (450)
T d1pmma_         205 PTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCG-  283 (450)
T ss_dssp             CBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCE-
T ss_pred             eeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCCee-
Confidence            378999999999999999986      458999999998 45444 34444  36799999999999999999998876 


Q ss_pred             eEEecCC
Q psy2484          71 PARTQRV   77 (98)
Q Consensus        71 ~ll~r~~   77 (98)
                      ++++|++
T Consensus       284 ~l~~r~~  290 (450)
T d1pmma_         284 WVIWRDE  290 (450)
T ss_dssp             EEEESSG
T ss_pred             EEEecCh
Confidence            4556654

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=2.1e-15  Score=114.58  Aligned_cols=76  Identities=13%  Similarity=0.056  Sum_probs=60.2

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccc-hhhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNL-SSLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP   78 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~-~al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~   78 (98)
                      ++|++.+|.+||+++|+++|++||+|||||++.+ ++..+.+.  ...++..+|++++++|||++.|++ +++++.|+..
T Consensus       201 ~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g-~~~l~~~~~~  279 (445)
T d3bc8a1         201 TTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVG-GAIIAGFNEP  279 (445)
T ss_dssp             ESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSS-CEEEEESCHH
T ss_pred             eCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCCcceEEecCccccccCCC-CceeeeCChH
Confidence            5788999999999999999999999999999854 33333333  234577899999999999999965 4566776643

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.37  E-value=3.4e-14  Score=107.97  Aligned_cols=76  Identities=11%  Similarity=0.046  Sum_probs=58.9

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhc-CCC-CCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLAL-NSH-SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP   78 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~-~~~-~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~   78 (98)
                      |.+++..|.+||+++|+++|++||+|||||++.|+.... ++. ...+...+|+++.++||+|++|.+. ++++.|++.
T Consensus       218 ~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~l~~~~g~-~~~~~~~~~  295 (434)
T d2z67a1         218 TLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGG-GLVYSTDAE  295 (434)
T ss_dssp             ESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSC-EEEEESCHH
T ss_pred             ccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEEEcCccccccCCCc-cccccCcHH
Confidence            567888999999999999999999999999986544332 222 1235567999999999999999655 455666643

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.89  E-value=3.1e-10  Score=82.11  Aligned_cols=68  Identities=10%  Similarity=0.084  Sum_probs=50.7

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc-cCccccccCccccCCCCCCCeeEEecC
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ-PGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~-~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      -++.+|.+.|+++|+++|++||+|+|||++.+.... +.   +..+ .+|.++.++||||+.| +-+.++..++
T Consensus       149 ~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~-~~---~~~~~g~D~~~~S~~K~~~~~-g~~g~l~~~~  217 (364)
T d2e7ja1         149 PDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRM-PV---SLKEIGADFIVGSGHKSMAAS-GPIGVMGMKE  217 (364)
T ss_dssp             SCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTB-CC---CHHHHTCSEEEEEHHHHSSCC-SSCEEEEECT
T ss_pred             CCCCCceeecchhheeccccccchhhccccchhhhh-hh---cccccccceeeeccccccCCC-CCEEEEEECH
Confidence            356789999999999999999999999998644332 21   1111 2799999999999999 4344555444

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=98.69  E-value=1.4e-08  Score=74.59  Aligned_cols=68  Identities=10%  Similarity=0.043  Sum_probs=50.4

Q ss_pred             CcccccccCCChHHHHHHHHHc----CceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKY----NLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~----~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll   73 (98)
                      ..+..+|.+.|+++|.++|+++    ++++|||++.+.... + ..++. -.+|.++.++||||+.|.+++.+++
T Consensus       153 ~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~-~-~~~~~-~~~D~~~~s~~K~~~~p~G~g~l~~  224 (381)
T d1elua_         153 HLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSL-P-LDFSR-LEVDYYAFTGHKWFAGPAGVGGLYI  224 (381)
T ss_dssp             SBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTB-C-CCTTT-SCCSEEEEESSSTTCCCTTCEEEEE
T ss_pred             cccccccccchhhHHHHHHhhcccccccccccccccccccc-c-ccccc-cccccccccccccccccchhhHHHh
Confidence            3467799999999999999984    699999996433221 1 11222 2599999999999999977764443

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=98.63  E-value=1e-08  Score=78.05  Aligned_cols=72  Identities=10%  Similarity=-0.007  Sum_probs=54.0

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhh-cCCCC----CCCC-----ccCccccccCccccCCCCCCCeeEEe
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLA-LNSHS----PSPL-----QPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~-~~~~~----~~gi-----~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      .+..|.+.|+++|+++|++||+|+|||++.++... .+..+    ..|.     ..+|.++...||+|+.+ .-++++..
T Consensus       183 ~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~-~~g~ll~~  261 (462)
T d1c4ka2         183 GTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF-SQTSQIHK  261 (462)
T ss_dssp             BCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC-TTCEEEEE
T ss_pred             eeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccc-cceEEEEe
Confidence            45689999999999999999999999997544433 33322    2232     24699999999999999 55666666


Q ss_pred             cCC
Q psy2484          75 QRV   77 (98)
Q Consensus        75 r~~   77 (98)
                      ++.
T Consensus       262 ~~~  264 (462)
T d1c4ka2         262 KDS  264 (462)
T ss_dssp             ECG
T ss_pred             ccc
Confidence            653

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=1.6e-08  Score=76.36  Aligned_cols=70  Identities=6%  Similarity=-0.073  Sum_probs=51.4

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      +..+..+|.+-|+++|+++|+++|++++|||+-.....--+.  + --.+|.++.++|||+| |.+++.+.+.+
T Consensus       170 ~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~--~-~~~~D~~~~s~hK~~G-p~G~g~l~v~~  239 (405)
T d1jf9a_         170 THVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDV--Q-ALDCDFYVFSGHKLYG-PTGIGILYVKE  239 (405)
T ss_dssp             ESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCH--H-HHTCSEEEEEGGGTTS-CSSCEEEEECH
T ss_pred             ecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccch--h-hcCCceeecccccccc-CCCceeeeech
Confidence            356778999999999999999999999999963333221111  1 2349999999999987 65776544433

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.41  E-value=8.9e-08  Score=69.16  Aligned_cols=70  Identities=3%  Similarity=-0.087  Sum_probs=52.6

Q ss_pred             CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      +..++.+|.+-|+.+|+++|++||++++||+.-..+.. + ..++- -.+|-++...||||+-|.+.+.+.+.
T Consensus       134 ~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~-~-~d~~~-~~~D~~~~s~~K~l~gp~G~g~l~~~  203 (361)
T d1m32a_         134 VHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI-P-MDIAA-LHIDYLISSANKCIQGVPGFAFVIAR  203 (361)
T ss_dssp             ESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS-C-CCTTT-TTCSEEEEESSSTTCCCSSEEEEEEE
T ss_pred             EeeecccccchhhhhhhhhhcccceeeEeecccccCcc-c-ccccc-cccceEEeeecccccCCCCceEEEec
Confidence            45678899999999999999999999999996432221 1 11222 24899999999999998776544444

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.4e-07  Score=67.78  Aligned_cols=69  Identities=17%  Similarity=0.073  Sum_probs=51.0

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      --++.+|.+.|+++|+++|++||+++|||++-..+..-  ..++. -.+|-+....|||++-|.+. ++++.+
T Consensus       152 ~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~--~d~~~-~~~D~~~~s~~K~~~gp~g~-~~~~~~  220 (388)
T d1h0ca_         152 HGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTP--LYMDR-QGIDILYSGSQKALNAPPGT-SLISFS  220 (388)
T ss_dssp             SEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSC--CCTTT-TTCSEEEEESSSTTCCCTTC-EEEEEC
T ss_pred             eeeeccccccCHHHHHHHhhcccccceecccccccccc--ccccc-cccceecccccccccCCCce-EEEeec
Confidence            34688999999999999999999999999964333221  11222 24799999999999999444 444444

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=8.7e-07  Score=65.26  Aligned_cols=68  Identities=12%  Similarity=0.090  Sum_probs=49.7

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      -+..+|.+-|+++|.++|++||+|+.||++...+.. + ..+. -..+|.++++.|||++-+ +.+. ++.|.
T Consensus       152 ~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~-~-~d~~-~~~~D~~~~s~~k~~g~~-g~g~-~~~~~  219 (391)
T d1p3wa_         152 VNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKL-P-IDLS-QLKVDLMSFSGHKIYGPK-GIGA-LYVRR  219 (391)
T ss_dssp             BCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTB-C-CCTT-TSCCSEEEEESTTTTSCS-SCEE-EEECB
T ss_pred             CCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCc-c-ccch-hccccccccccccccCCC-ceEE-EEEec
Confidence            356799999999999999999999999997543321 1 1111 234899999999998776 7654 44443

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=98.19  E-value=3.3e-07  Score=68.99  Aligned_cols=68  Identities=7%  Similarity=-0.100  Sum_probs=49.1

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPART   74 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~   74 (98)
                      .-+..+|.+-|+++|.++|+++|+|+||||+-..+..--+.  + --.+|-++++.|||++ |-+.+.+++.
T Consensus       171 ~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~--~-~~~~D~~~~s~hK~~g-p~G~g~l~v~  238 (408)
T d1t3ia_         171 HISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDV--Q-LIDCDWLVASGHKMCA-PTGIGFLYGK  238 (408)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCH--H-HHTCSEEEEEGGGTTS-CTTCEEEEEC
T ss_pred             cccccccccCcHHHHhhhhhccCceeeeccceecccccccc--c-ccCCceEEeccccccC-CCCccccccc
Confidence            45678999999999999999999999999963333221111  0 1247999999999976 6476544444

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=97.99  E-value=3.9e-06  Score=61.34  Aligned_cols=70  Identities=6%  Similarity=-0.143  Sum_probs=50.0

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      .-+..+|.+-|+++|+++|+++|+++|||++-..+.. + ..+ .-..+|-+++..|||++-|-+.+.++..+
T Consensus       172 ~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~-~-~~~-~~~~~d~~~~s~~K~~~~~~g~~g~~~~~  241 (404)
T d1qz9a_         172 HVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAV-P-VDL-HQAGADYAIGCTYKYLNGGPGSQAFVWVS  241 (404)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTS-C-CCH-HHHTCSEEEECSSSTTCCCTTCCCEEEEC
T ss_pred             cccccccceecHHHHhccccccccceeEEeecccccc-c-ccc-ccccceEEEEechhhcccCCceEEEEEec
Confidence            3467789999999999999999999999996333221 1 111 12357899999999998764544444444

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=1.3e-06  Score=66.52  Aligned_cols=66  Identities=8%  Similarity=0.063  Sum_probs=46.1

Q ss_pred             cCCChHHHHHHHHHcCceEEeeccc--chhhh----cCCCCC--------CCCccCccccccCccccCCCCCCCeeEEec
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHN--LSSLA----LNSHSP--------SPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~--~~al~----~~~~~~--------~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ..++|++|++||++||++||+|++-  +++..    .....-        .-...+|++++..||-++.|  .+.+++.+
T Consensus       202 ~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~--~gg~i~~~  279 (467)
T d2v1pa1         202 SLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP--MGGLLCMK  279 (467)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS--SCEEEEEC
T ss_pred             CHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCC--CceeEEec
Confidence            4578999999999999999999972  22211    111111        12457999999999999999  34555555


Q ss_pred             CC
Q psy2484          76 RV   77 (98)
Q Consensus        76 ~~   77 (98)
                      +.
T Consensus       280 ~~  281 (467)
T d2v1pa1         280 DD  281 (467)
T ss_dssp             SG
T ss_pred             ch
Confidence            43

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=97.67  E-value=2.6e-05  Score=55.97  Aligned_cols=67  Identities=10%  Similarity=0.025  Sum_probs=49.6

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccch-hhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLS-SLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~-al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      -++.+|.+.|+++|.++|+++|.-++||+.-.. ..-++   ++ -..+|-+....|||++.|-++ ++++.+
T Consensus       152 ~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~---~~-~~~~d~~~~s~~K~~~gp~g~-~~~~~~  219 (377)
T d1vjoa_         152 AETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIF---LD-AWGVDLAYSCSQKGLGCSPGA-SPFTMS  219 (377)
T ss_dssp             EETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCC---TT-TTTCSEEECCSSSTTCSCSSC-EEEEEC
T ss_pred             eeccceeeechhhhhhhhhhccceEEEecchhhhhhhhc---cc-ccccceeeecccccccCCCEE-EEecch
Confidence            357899999999999999999999999996422 22121   22 234688999999999999444 444444

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=2.1e-05  Score=57.19  Aligned_cols=70  Identities=3%  Similarity=-0.052  Sum_probs=51.0

Q ss_pred             CCcccccccCCChHHHHHHHHHcC--ceEEeeccc-chhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           2 EIGSSLNGHVDNVSLLQEICAKYN--LWLHLRGHN-LSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         2 taGtt~~Ga~D~l~~i~~ic~~~~--lWlHVDga~-~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      +...+.+|..-|+.+++++|++++  +.+|||+.- .+..-+.   + .-..+|-++...||||+-|-+++.+++.+
T Consensus       142 ~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid---~-~~~giD~~~~s~~K~l~gP~G~g~l~vs~  214 (382)
T d2bkwa1         142 THVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE---F-DEWGVDFALTASQKAIGAPAGLSISLCSS  214 (382)
T ss_dssp             ESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCC---T-TTTTCSEEEEESSSTTCCCSCEEEEEECH
T ss_pred             eeccccccccccchhhhhhccccccceeeeeeccccccccccc---c-cccCeeEEeecccccCcCCCchhhhhccH
Confidence            345678999999999999998775  999999953 2222221   1 12348999999999998776876555543

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.57  E-value=7.7e-05  Score=54.09  Aligned_cols=69  Identities=12%  Similarity=0.055  Sum_probs=48.6

Q ss_pred             CcccccccCCChHHHHHHHHHc--CceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKY--NLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~--~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .-+..+|.+.|+++|.++|+++  +..+.||++-.+...--+  ++ -..+|-++.++|||++ |.+.+. +.++.
T Consensus       147 ~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d--~~-~~~~D~~~~s~~K~~g-p~G~~~-l~~~~  217 (376)
T d1eg5a_         147 AANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFS--LE-KLEVDYASFSAHKFHG-PKGVGI-TYIRK  217 (376)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCC--CT-TTCCSEEEEEGGGGTS-CTTCEE-EEECT
T ss_pred             CCccccceeeeehhhhhhhhhcccCceeEEEeeecccccccc--cc-ccCccceecccceeec-CCCcee-EEecc
Confidence            3467899999999999999766  999999996443332111  11 1238999999999976 547654 44443

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=97.47  E-value=2.5e-05  Score=60.44  Aligned_cols=66  Identities=5%  Similarity=0.030  Sum_probs=47.2

Q ss_pred             cCCChHHHHHHHHHcCceEEeecc--cchhhhcCCC--CCCC----------CccCccccccCccccCCCCCCCeeEEec
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGH--NLSSLALNSH--SPSP----------LQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga--~~~al~~~~~--~~~g----------i~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      ..+++++|+++|++||+-+|+|++  .+++......  ...+          ...+|++++..||-++.|  .+.+++.+
T Consensus       193 ~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~--~GG~i~~~  270 (456)
T d1c7ga_         193 SMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVN--IGGFLCMN  270 (456)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS--SCEEEEES
T ss_pred             cHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEecccccccc--ceeEEEcC
Confidence            347899999999999999999996  3333322211  1111          246999999999999999  35666766


Q ss_pred             CC
Q psy2484          76 RV   77 (98)
Q Consensus        76 ~~   77 (98)
                      ++
T Consensus       271 ~~  272 (456)
T d1c7ga_         271 DE  272 (456)
T ss_dssp             CH
T ss_pred             CH
Confidence            54

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=97.26  E-value=3.6e-05  Score=57.98  Aligned_cols=64  Identities=8%  Similarity=0.025  Sum_probs=44.2

Q ss_pred             CCChHHHHHHHHHcCceEEeecccchhhh--c----CCC--------CCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGHNLSSLA--L----NSH--------SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga~~~al~--~----~~~--------~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      .++|++|+++|++||++||+|++.....+  .    +..        .......+|++++..||-++.| .. .+++.++
T Consensus       202 ~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~-~~-g~l~~~~  279 (465)
T d1ax4a_         202 MSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN-IG-GLVAIRD  279 (465)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS-SC-EEEEESS
T ss_pred             HHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccc-cc-eeEeecc
Confidence            46899999999999999999997322111  0    000        0123456899999999999999 44 4555543

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=97.08  E-value=0.00016  Score=53.64  Aligned_cols=69  Identities=12%  Similarity=-0.049  Sum_probs=50.1

Q ss_pred             CcccccccCCChHHHHHHHHHcC--ceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYN--LWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ   75 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~--lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r   75 (98)
                      -..|.+|.+.|+.+|+++|++++  .+++||+. ..++.-++   ++ ....|=+..-.||||+-|-+++.+++.+
T Consensus       128 h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~---~d-~~~iD~~~~~sqK~l~gppG~~~v~~s~  199 (348)
T d1iuga_         128 HSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVA---LE-AMGVDAAASGSQKGLMCPPGLGFVALSP  199 (348)
T ss_dssp             SEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCC---SG-GGTCSEEEEESSSTTCCCSCEEEEEECH
T ss_pred             ecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccc---cc-cccCCEEEeccccceecCCceeeeeech
Confidence            35789999999999999999985  89999994 22222222   22 1248999999999995554876555543

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0007  Score=53.16  Aligned_cols=72  Identities=18%  Similarity=0.176  Sum_probs=56.7

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +|.+...-.-|++++++||++.|..|++|.+--++|+....--.-++.||-+|..-||.|.=| . +.++++|.
T Consensus       171 ~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGP-r-ggiI~~~~  242 (416)
T d1dfoa_         171 GGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP-R-GGLILAKG  242 (416)
T ss_dssp             EECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCC-S-CEEEEESS
T ss_pred             ecccccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccccceeeeehhhcccCC-C-ceEEEecc
Confidence            567777778899999999999999999999754555544443345777999999999999999 4 45666653

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=97.01  E-value=0.00025  Score=51.07  Aligned_cols=66  Identities=14%  Similarity=0.055  Sum_probs=48.1

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCee
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSP   71 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~   71 (98)
                      .-++.+|..-|+++|+++|+++|..++||+.-..+.  -+..++. -.+|-+....|||++-|-+++.+
T Consensus       150 ~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~--~pid~~~-~~~d~~~~s~~K~~~gp~G~g~~  215 (388)
T d2ch1a1         150 HGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCG--VPFYMDK-WEIDAVYTGAQKVLGAPPGITPI  215 (388)
T ss_dssp             SEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT--BCCCTTT-TTCCEEECCCC-CCCCCSSCEEE
T ss_pred             ecccccccccchhhhcchhccccceeeeeeeecccc--cccchhc-cCceEEEEccccccCCCCeEEEE
Confidence            357889999999999999999999999999632221  1111222 25889999999999999555433

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.00  E-value=0.00015  Score=53.48  Aligned_cols=61  Identities=10%  Similarity=0.052  Sum_probs=44.1

Q ss_pred             cccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc-cCccccccCccccCCCCCCC
Q psy2484           8 NGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ-PGHSVSLPLGTWLNLPLSLP   69 (98)
Q Consensus         8 ~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~-~ADS~t~d~HKwL~vP~~~~   69 (98)
                      ++.+++|++|+++|++||+|+.+|.+++............++ .+|=++...+|.++-+ ..+
T Consensus       147 ~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g~-~~G  208 (366)
T d2aeua1         147 VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP-RGG  208 (366)
T ss_dssp             BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSC-SCE
T ss_pred             cCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEeccccccccc-cee
Confidence            556789999999999999999999987654433222211112 2688889999998766 554

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=96.98  E-value=0.00036  Score=47.39  Aligned_cols=30  Identities=20%  Similarity=0.442  Sum_probs=25.5

Q ss_pred             cccccCCChHHHHHHHHHcCceEEeecccc
Q psy2484           6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNL   35 (98)
Q Consensus         6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~   35 (98)
                      ...+.++++.+++++|++||+|+|+|.+..
T Consensus       149 ~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~  178 (345)
T d1v72a1         149 GSIYTLDEIEAIGDVCKSSSLGLHMDGSRF  178 (345)
T ss_dssp             SCCCCHHHHHHHHHHHHHTTCEEEEEETTH
T ss_pred             cccccchhhhhHHHHHHhcCceeeeccccc
Confidence            445667899999999999999999999643

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.82  E-value=0.0013  Score=51.49  Aligned_cols=72  Identities=17%  Similarity=0.175  Sum_probs=55.7

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +|.+..--.-|++++++||++.|.+|.+|++=-++|+....--.-++.||-+|..-||.|.=| .. .+++.+.
T Consensus       169 ~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGP-rg-g~I~~~~  240 (405)
T d1kl1a_         169 AAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGP-RG-GMILCQE  240 (405)
T ss_dssp             ECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCC-SC-EEEEECH
T ss_pred             ecccccccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhhhhheeccccccccCC-CC-ceEEecc
Confidence            466666667789999999999999999999755555555443344688999999999999999 54 4556553

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=96.74  E-value=0.0015  Score=51.92  Aligned_cols=72  Identities=17%  Similarity=0.186  Sum_probs=56.9

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +|.++.--.-|++++++||++-|.+|.+|.+--+.|+....--.-++.||-+|..-||.|.=| .. .++++++
T Consensus       182 ~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~aDvvt~tTHKTlrGP-rg-GiIl~~~  253 (463)
T d2a7va1         182 AGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA-RS-GLIFYRK  253 (463)
T ss_dssp             ECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSC-SC-EEEEEEC
T ss_pred             ecccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhhhhhhhchhhhhhcCC-Cc-eEEEEcc
Confidence            466666667799999999999999999999755666655543345788999999999999999 54 4556654

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.57  E-value=0.0018  Score=51.50  Aligned_cols=72  Identities=19%  Similarity=0.157  Sum_probs=55.3

Q ss_pred             CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +|.+..--.-|++++++||++.|.+|.+|.+--++|+....--.-++.||-+|..-||.|.=| ..+ ++++|.
T Consensus       186 ~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~aDvvt~tTHKtlrGP-rgG-iI~~~~  257 (470)
T d1rv3a_         186 AGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGC-RAG-MIFYRR  257 (470)
T ss_dssp             ECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCC-SCE-EEEEEC
T ss_pred             echhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhheeeeeeeehhhhccCC-cce-EEEEcc
Confidence            466666667799999999999999999999754555444442344688999999999999999 554 555554

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.18  E-value=0.00045  Score=47.13  Aligned_cols=56  Identities=18%  Similarity=0.207  Sum_probs=39.4

Q ss_pred             cCCChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccCccccccCccccCCC
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      -++++.+|+++|++||+++|+|++.+....-...  ........+++++..+|..+..
T Consensus       147 ~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  204 (343)
T d1m6sa_         147 PLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP  204 (343)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS
T ss_pred             CHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhcccccccccccccccccc
Confidence            3567888888999999999999975443322212  1234566778888888888777

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.45  E-value=0.0084  Score=42.69  Aligned_cols=70  Identities=6%  Similarity=-0.017  Sum_probs=47.8

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      +...|..-|+.+|.++|++||+.+-.|++-........... |-.....+.+.++|++..+  -+.+++..++
T Consensus       126 ~h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~-g~~g~~~~Sf~~~K~l~~g--~GG~i~t~~~  195 (376)
T d1mdoa_         126 VHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHI-GARGTAIFSFHAIKNITCA--EGGIVVTDNP  195 (376)
T ss_dssp             BCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEET-TSSSEEEEECCTTSSSCSS--SCEEEEESCH
T ss_pred             eCCCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeec-ccccCccccCCCcCCCCCC--CCCEEEEech
Confidence            34578888999999999999999999996322211122211 2222356778999999876  4667777664

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.011  Score=43.90  Aligned_cols=58  Identities=10%  Similarity=0.220  Sum_probs=39.9

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCCccCccccccCccccCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      ..|.+=|+.+|.+||++||+||.||.+-+...+=+..+    ..++ ..|.+.....|-++.+
T Consensus       179 ~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~-~~~~~~~t~~ka~g~~  240 (383)
T d1bs0a_         179 MDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV-KPELLVVTFGKGFGVS  240 (383)
T ss_dssp             TTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC-CCSEEEEESSSTTSSC
T ss_pred             CCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCC-cccccccccccccccc
Confidence            46888899999999999999999999643333222211    1232 3455566677888877

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.03  Score=41.73  Aligned_cols=58  Identities=12%  Similarity=0.151  Sum_probs=41.7

Q ss_pred             cccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC-----CCCCccCccccccCccccCCC
Q psy2484           8 NGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS-----PSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         8 ~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~-----~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      .|.+-||.+|.+||++||++|.||.+-+....-+..+     ..-..+.|=++..+.|-|+-+
T Consensus       190 ~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~  252 (401)
T d1fc4a_         190 DGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGA  252 (401)
T ss_dssp             TTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSS
T ss_pred             CCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccC
Confidence            4667799999999999999999999643333322221     223456788888999999543

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=94.00  E-value=0.0032  Score=44.98  Aligned_cols=65  Identities=8%  Similarity=-0.119  Sum_probs=45.4

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      ++.+|.+-|+.+|.++|+++|+.++||+. +.+..-+.      ++..|=...-.+|.++.| ....+.++..
T Consensus       146 ~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id------~~~~di~~~s~~k~~~~~-~~~~~~~~~~  211 (361)
T d2c0ra1         146 HLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFD------LNQFGLVYAGAQKNLGPS-GVTVVIVRED  211 (361)
T ss_dssp             EEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCC------GGGCSEEEEETTTTTCCS-SCEEEEEEGG
T ss_pred             EEecccceecceEEEeeccCCceEEEEeeccccccccc------cccceeEEEecccccccc-cCcEEEEEhH
Confidence            34578888999999999999999999995 33332222      233455566679999988 6555555443

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=93.70  E-value=0.012  Score=42.05  Aligned_cols=67  Identities=6%  Similarity=-0.138  Sum_probs=41.0

Q ss_pred             CChHHHHHHHHHcCceEEeecccchhhhcCCCC--CCCCccCccccccCccccCCCCCCCeeEEecCCCC
Q psy2484          12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS--PSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVPP   79 (98)
Q Consensus        12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~--~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~~   79 (98)
                      +.+++|.++|++||+|+++|..+.....-....  .........+.....|.++.| +.-...+..+.+.
T Consensus       172 ~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~-G~R~g~~~~~~~~  240 (368)
T d1v2da_         172 RELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEAT-GYRVGWIVGPKEF  240 (368)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCG-GGCCEEEECCTTT
T ss_pred             HHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeeccccccccc-ccccccccccccc
Confidence            458889999999999999999765332222221  111122233456677888888 6644445554443

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=92.88  E-value=0.056  Score=39.52  Aligned_cols=74  Identities=11%  Similarity=0.049  Sum_probs=51.7

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCCCC
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVPP   79 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~~   79 (98)
                      -+...|..-++.+|.++|+++|+.+-.|.+-...................+.+.+.|-+...  -+.+++.++++.
T Consensus       128 ~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g--~GG~i~t~~~~~  201 (384)
T d1b9ha_         128 PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAG--EGGAVVFPDGET  201 (384)
T ss_dssp             CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSS--SCEEEEECTTCH
T ss_pred             cccccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceeccccccccccc--ccchhhhhhHHH
Confidence            35667888899999999999999999999633222222222323445666778889998765  567777776544

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=91.63  E-value=0.0074  Score=42.53  Aligned_cols=57  Identities=7%  Similarity=-0.220  Sum_probs=40.0

Q ss_pred             cccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCC
Q psy2484           4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNL   64 (98)
Q Consensus         4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~v   64 (98)
                      -++.+|.+-|+.+|.++|+++|..+.|||. ..+..-+.   ++-+ .+|-....-|||+.-
T Consensus       145 ~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id---~~~~-~vd~~~~~~~k~~~~  202 (360)
T d1w23a_         145 LHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLK---VNQF-GMIYAGAQKNLGPSG  202 (360)
T ss_dssp             EEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCC---GGGC-SEEEEETTTTTSCTT
T ss_pred             eEecCCccccceeeeeccccceeeEEeeccccccccccc---cccc-cceEEeeccccccCC
Confidence            457789999999999999999999999996 33333222   1212 356677777776443

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=90.66  E-value=0.23  Score=35.43  Aligned_cols=70  Identities=14%  Similarity=0.101  Sum_probs=51.7

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV   77 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~   77 (98)
                      +...|..-++.+|.++|+++|+++=-|++ ..++. ...........+..+.+.+.|-+..- + +.+++.++.
T Consensus       127 vh~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~-~~~~~~G~~g~~~~~Sf~~~K~l~~g-~-GG~i~t~~~  197 (371)
T d2fnua1         127 VDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSE-YQNKKVGGFALASVFSFHAIKPITTA-E-GGAVVTNDS  197 (371)
T ss_dssp             ECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCS-S-CEEEEESCH
T ss_pred             ccccccccccccccccccccchhhccchhhccCce-eccccCCccccccccccccccccccc-c-ceEEEeech
Confidence            45678888999999999999999999996 33333 23333445566778888899998776 4 677777653

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=90.27  E-value=0.27  Score=36.89  Aligned_cols=59  Identities=5%  Similarity=0.032  Sum_probs=43.3

Q ss_pred             ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC-----CCCCccCccccccCccccCCC
Q psy2484           7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS-----PSPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus         7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~-----~~gi~~ADS~t~d~HKwL~vP   65 (98)
                      ..|.+=||.+|.+||++||++|-||-+=+.+..=+..+     ..-.+..|=++-.+.|-|+..
T Consensus       189 mdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~  252 (396)
T d2bwna1         189 MDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF  252 (396)
T ss_dssp             TTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC
T ss_pred             CcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeeccccccccc
Confidence            46888899999999999999999999644443323222     122355677778899999877

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=89.81  E-value=0.095  Score=34.03  Aligned_cols=56  Identities=13%  Similarity=0.086  Sum_probs=35.5

Q ss_pred             cCCChHHHHHHHHHcCceEEeecccchhhhcCCC-CC---CCCccCccccccCccccCCC
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-SP---SPLQPGHSVSLPLGTWLNLP   65 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~---~gi~~ADS~t~d~HKwL~vP   65 (98)
                      ..|++.++.++|+++|.|+|+|.+.+........ ..   ......+..++...|..+.+
T Consensus       148 ~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (340)
T d1svva_         148 TKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMF  207 (340)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSS
T ss_pred             cHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccc
Confidence            3467888899999999999999975544433332 11   11122455566666666555

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=88.30  E-value=0.36  Score=34.18  Aligned_cols=70  Identities=10%  Similarity=0.032  Sum_probs=45.2

Q ss_pred             ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484           5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR   76 (98)
Q Consensus         5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~   76 (98)
                      +...|...++.+|.++|+++|+.+=-|++-....-...........+-.+.+.+.|-+..-  -+.+++..+
T Consensus       118 ~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~~K~l~tg--eGG~i~tnn  187 (374)
T d1o69a_         118 THLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTS--GGGMLIGKN  187 (374)
T ss_dssp             ECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS--SCEEEEESC
T ss_pred             cccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEeccCccccccc--cceeehhhh
Confidence            3457889999999999999999999999632222222223322333345555666777665  445666654

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=86.87  E-value=0.16  Score=36.31  Aligned_cols=26  Identities=23%  Similarity=0.327  Sum_probs=22.1

Q ss_pred             cCCChHHHHHHHHHcCceEEeecccc
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHNL   35 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~~   35 (98)
                      ..+.+.+|+++|++||+|+..|-++.
T Consensus       189 s~~~l~~i~~~a~~~~~~li~De~y~  214 (403)
T d1wsta1         189 SVDRRKKLLELANEYDFLIVEDGPYS  214 (403)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CHHHHHHHHHHHHhcCceeccccchh
Confidence            34667889999999999999999764

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=86.02  E-value=0.24  Score=36.17  Aligned_cols=61  Identities=10%  Similarity=0.089  Sum_probs=37.1

Q ss_pred             CCChHHHHHHHHHcCceEEeecccchhhhcCCCCC-----------CCCccCc--cccccCccccCCCCCCCeeEE
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSP-----------SPLQPGH--SVSLPLGTWLNLPLSLPSPAR   73 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~-----------~gi~~AD--S~t~d~HKwL~vP~~~~~~ll   73 (98)
                      .+.+++|.++|++||+|+-+|.++.... ......           ......|  -+...+.|.+++| +.-.-.+
T Consensus       207 ~~~~~~i~~~a~~~~~~vI~De~Y~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~-GlRiG~~  280 (428)
T d1iaya_         207 KDTLKSVLSFTNQHNIHLVCDEIYAATV-FDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLP-GFRVGII  280 (428)
T ss_dssp             HHHHHHHHHHHHTTTCEEEEECTTGGGC-CSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCG-GGCEEEE
T ss_pred             ccccchhheeeccCcEEEEecccccccc-cCcccccccccccchhhccccccceEEEEecCCCcccCC-Ccccccc
Confidence            3458899999999999999999865322 221110           0011111  3456778999988 7533333

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=85.69  E-value=1  Score=31.34  Aligned_cols=61  Identities=16%  Similarity=0.209  Sum_probs=37.6

Q ss_pred             ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccC--ccccccCccccCCCCCC
Q psy2484           7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPG--HSVSLPLGTWLNLPLSL   68 (98)
Q Consensus         7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~A--DS~t~d~HKwL~vP~~~   68 (98)
                      .+|..   +.+.+|.++|++|++|+=+|-++.....-......-.+..  --+...+.|++++| +.
T Consensus       156 PtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~-Gl  221 (355)
T d1lc5a_         156 PTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIP-GL  221 (355)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCT-TT
T ss_pred             cccccchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccc-cc
Confidence            34554   4478888999999999999987643221111111111111  23555789999999 75

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=84.98  E-value=0.34  Score=34.00  Aligned_cols=58  Identities=12%  Similarity=0.238  Sum_probs=35.3

Q ss_pred             cCCChHHHHHHHHHcCceEEeecccchhhhcCCC-C--CCCCccCccc-cccCccccCCCCCCC
Q psy2484          10 HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S--PSPLQPGHSV-SLPLGTWLNLPLSLP   69 (98)
Q Consensus        10 a~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~--~~gi~~ADS~-t~d~HKwL~vP~~~~   69 (98)
                      .-+.+.+|.++|+++|+|+.+|.++... ...+. .  ......-+.+ ....-|-+++| +.-
T Consensus       151 s~~~~~~i~~~~~~~~~~lI~De~y~~~-~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~-g~R  212 (361)
T d1d2fa_         151 TCDELEIMADLCERHGVRVISDEIHMDM-VWGEQPHIPWSNVARGDWALLTSGSKSFNIP-ALT  212 (361)
T ss_dssp             CTTHHHHHHHHHHHTTCEEEEECTTTTC-BCSSSCCCCGGGTCCSSEEEEECSHHHHTCG-GGC
T ss_pred             chhhhhhhhhhhhhhheeeeeccccccc-ccccccccccccccccccccccccccccccc-ccc
Confidence            4455889999999999999999976432 22322 1  1222222333 33445777777 553

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=82.99  E-value=0.35  Score=35.24  Aligned_cols=26  Identities=12%  Similarity=0.037  Sum_probs=22.3

Q ss_pred             CCChHHHHHHHHHcCceEEeecccch
Q psy2484          11 VDNVSLLQEICAKYNLWLHLRGHNLS   36 (98)
Q Consensus        11 ~D~l~~i~~ic~~~~lWlHVDga~~~   36 (98)
                      -+.+++|.++|++||+|+-+|-+++.
T Consensus       208 ~~~l~~i~~~a~~~~~~vI~De~Y~~  233 (431)
T d1m7ya_         208 RNELYLLLSFVEDKGIHLISDEIYSG  233 (431)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTGG
T ss_pred             ccccccccccccccCcceeecccccc
Confidence            35588999999999999999998654