Psyllid ID: psy2512

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MSGFVTLGVLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHLLTRRFLIQISAKTWNSSSQSGTYLRWNNNGGT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEccccEEEcccccccccccccccccccccccccccEEEEccccccccEEccccccccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccccccccccHHHHHHccccccEEEEcccEEEcHHHcccccccccccccccccccccccEEEEccccccEEEEccccccccccccccEEEEEccccc
Coil and Loop (DISEMBL)
MSGFVTLGVLFSSiwltssdvlrprgVSLMraslyqpaseftcfdgsltipfsyvnddycdcqdssdepgtsacpngtfhshLLTRRFLIQISAKtwnsssqsgtylrwnnnggt
Flexible Loop (DISEMBL)
MSGFVTLGVLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHLLTRRFLIQISAKtwnsssqsgtylrwnnnggt
Low Complexity Region (SEG)
MSGFVTLGVLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHLLTRRFLIQISAKTWNSSSQSGTYLRWNNNGGT
Disordered region (IsUnstruct)
***FVTLGVLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQ**********CPNGTFHSHLLTRRFLIQISAKTWN*****************
Disordered Region (DISOPRED)
*SGFVTLGVLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHLLTRRFLIQISAKTWNSSSQSGTYLRWNNNG**
Disordered Region (DISEMBL)
MSGFVTLGVLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDC*********SACPNGTFHSHLLTRRFLIQISAKTWNSSSQSGTYLRWNNNGGT
Disordered Region (DISPRO)
*SGFVTLGVLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHLLTRRFLIQISAKTWNSSSQSGTYLRWNNN***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGFVTLGVLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHLLTRRFLIQISAKTWNSSSQSGTYLRWNNNGGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
P14314	528	Glucosidase 2 subunit bet	yes	N/A	0.530	0.115	0.672	5e-21
O08795	521	Glucosidase 2 subunit bet	yes	N/A	0.530	0.117	0.655	1e-20
Q28034	533	Glucosidase 2 subunit bet	yes	N/A	0.530	0.114	0.655	2e-20
Q9USH8	506	Glucosidase 2 subunit bet	yes	N/A	0.643	0.146	0.454	5e-11

>sp|P14314|GLU2B_HUMAN Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/61 (67%), Positives = 46/61 (75%)

Query: 20 DVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTF 79
          +V RPRGVSL     Y  +  FTC DGS TIPF  VNDDYCDC+D SDEPGT+ACPNG+F
Sbjct: 16 EVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKDGSDEPGTAACPNGSF 75

Query: 80 H 80
          H
Sbjct: 76 H 76

Regulatory subunit of glucosidase II.
Homo sapiens (taxid: 9606)

>sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/61 (65%), Positives = 47/61 (77%)

Query: 20 DVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTF 79
          +V RPRGVSL     Y+ +  FTC DG+ TIPF  VNDDYCDC+D SDEPGT+ACPNG+F
Sbjct: 16 EVKRPRGVSLSNHHFYEESKPFTCLDGTATIPFDQVNDDYCDCKDGSDEPGTAACPNGSF 75

Query: 80 H 80
          H
Sbjct: 76 H 76

Regulatory subunit of glucosidase II.

Mus musculus (taxid: 10090)

>sp|Q28034|GLU2B_BOVIN Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH PE=2 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/61 (65%), Positives = 46/61 (75%)

Query: 20 DVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTF 79
          +V RPRGVSL     Y  +  FTC DGS +IPF  VNDDYCDC+D SDEPGT+ACPNG+F
Sbjct: 15 EVRRPRGVSLTNHHFYDESKPFTCLDGSASIPFDQVNDDYCDCKDGSDEPGTAACPNGSF 74

Query: 80 H 80
          H
Sbjct: 75 H 75

Regulatory subunit of glucosidase II.

Bos taurus (taxid: 9913)

>sp|Q9USH8|GLU2B_SCHPO Glucosidase 2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gtb1 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 5  VTLGVLFSSIWLTSSDVLRPRGVSLMRASLYQPASE--FTCFDGSLTIPFSYVNDDYCDC 62
          +T  +L SS++ T +     RGV+  ++ LY+P ++  + C      I F+ VNDDYCDC
Sbjct: 9  LTAPLLISSLY-TVNAANDLRGVASDKSDLYKPDAKGNWKCLGSDKLISFNQVNDDYCDC 67

Query: 63 QDSSDEPGTSACPNGTF 79
           D SDEPGTSAC NG F
Sbjct: 68 PDGSDEPGTSACHNGKF 84

Subunit of glucosidase 2, which cleaves sequentially the 2 innermost alpha-1,3-linked glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide precursor of immature glycoproteins. Specifically required for the cleavage of the final glucose.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
321473292	533	hypothetical protein DAPPUDRAFT_194601 [	0.765	0.165	0.590	3e-25
448824699	523	glucosidase II beta-subunit [Bombyx mori	0.669	0.147	0.692	1e-24
357620544	523	putative glucosidase 2 subunit beta [Dan	0.626	0.137	0.694	2e-24
328711659	522	PREDICTED: glucosidase 2 subunit beta-li	0.695	0.153	0.573	5e-24
189234578	520	PREDICTED: similar to glucosidase 2 subu	0.547	0.121	0.746	3e-22
242015614	560	glucosidase 2 subunit beta precursor, pu	0.547	0.112	0.682	5e-22
442757957	420	Hypothetical protein [Ixodes ricinus]	0.713	0.195	0.590	1e-20
442757001	563	Hypothetical protein [Ixodes ricinus]	0.713	0.145	0.578	3e-20
348509185	530	PREDICTED: glucosidase 2 subunit beta-li	0.591	0.128	0.617	3e-20
47220047	533	unnamed protein product [Tetraodon nigro	0.530	0.114	0.688	5e-20

>gi|321473292|gb|EFX84260.1| hypothetical protein DAPPUDRAFT_194601 [Daphnia pulex]

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/88 (59%), Positives = 63/88 (71%)

Query: 8   GVLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSD 67
            VL+    + ++ V RPRGVSL RASLY P ++FTC DGS T PF YVNDDYCDCQD SD
Sbjct: 21  AVLWKQTTVAATQVTRPRGVSLARASLYSPDADFTCLDGSATFPFRYVNDDYCDCQDGSD 80

Query: 68  EPGTSACPNGTFHSHLLTRRFLIQISAK 95
           EPGTSACPNG+F+   L    +I  S++
Sbjct: 81  EPGTSACPNGSFYCRNLGHEAMIVPSSR 108

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|448824699|dbj|BAM78679.1| glucosidase II beta-subunit [Bombyx mori]

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/78 (69%), Positives = 59/78 (75%), Gaps = 1/78 (1%)

Query: 4  FVTLGVLFSS-IWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDC 62
          F +  V+F S I    SDV RPRGVSL +ASLY P  +FTCFDG+ TIPFSYVNDDYCDC
Sbjct: 10 FSSYFVIFCSVIIFAQSDVPRPRGVSLSKASLYLPTKDFTCFDGTATIPFSYVNDDYCDC 69

Query: 63 QDSSDEPGTSACPNGTFH 80
           D SDEPGTSAC NG FH
Sbjct: 70 FDGSDEPGTSACINGVFH 87

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620544|gb|EHJ72695.1| putative glucosidase 2 subunit beta [Danaus plexippus]

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/72 (69%), Positives = 56/72 (77%)

Query: 9  VLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68
          ++F  +    SDV RPRGVSL +ASLY P  +FTCFDG+ TIPFSYVNDDYCDC D SDE
Sbjct: 16 IIFLLVISAQSDVPRPRGVSLSKASLYLPTKDFTCFDGTSTIPFSYVNDDYCDCFDGSDE 75

Query: 69 PGTSACPNGTFH 80
          PGTSAC NG FH
Sbjct: 76 PGTSACLNGVFH 87

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711659|ref|XP_001949003.2| PREDICTED: glucosidase 2 subunit beta-like [Acyrthosiphon pisum]

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 61/82 (74%), Gaps = 2/82 (2%)

Query: 1  MSGFVTLGVLFSSIW--LTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDD 58
          M  F  +  +F  I+  +  + +++PRG++  RASLY P  +F+CFDGS  IPFS+VNDD
Sbjct: 4  MENFYLIITIFCGIFTVINCTSIVKPRGIAFERASLYVPDKDFSCFDGSYIIPFSFVNDD 63

Query: 59 YCDCQDSSDEPGTSACPNGTFH 80
          YCDC D+SDEPGTSACPNGTFH
Sbjct: 64 YCDCPDASDEPGTSACPNGTFH 85

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234578|ref|XP_974655.2| PREDICTED: similar to glucosidase 2 subunit beta [Tribolium castaneum]

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/63 (74%), Positives = 50/63 (79%)

Query: 18 SSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNG 77
          SS+V RPRGVSL RASLY P   F CFD S +IPFS VND+YCDC D SDEPGTSACPNG
Sbjct: 26 SSEVSRPRGVSLSRASLYNPDRNFLCFDNSKSIPFSQVNDEYCDCPDGSDEPGTSACPNG 85

Query: 78 TFH 80
           FH
Sbjct: 86 VFH 88

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015614|ref|XP_002428448.1| glucosidase 2 subunit beta precursor, putative [Pediculus humanus corporis] gi|212513060|gb|EEB15710.1| glucosidase 2 subunit beta precursor, putative [Pediculus humanus corporis]

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 53/63 (84%)

Query: 18 SSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNG 77
          +S++ RPRGVS+ +ASLY P  +FTCFDG++TIPF  VNDD+CDC D SDEPGT+ACPNG
Sbjct: 34 ASEIRRPRGVSISKASLYIPDQDFTCFDGTITIPFLQVNDDFCDCPDGSDEPGTAACPNG 93

Query: 78 TFH 80
           FH
Sbjct: 94 FFH 96

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442757957|gb|JAA71137.1| Hypothetical protein [Ixodes ricinus]

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/83 (59%), Positives = 58/83 (69%), Gaps = 1/83 (1%)

Query: 5   VTLGVLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQD 64
           ++L +LF +  + S +V RPRGV L RASLY PA  FTCFDGS +  F  VNDDYCDC+D
Sbjct: 29  ISLLLLFITA-VHSVEVSRPRGVPLARASLYDPAKNFTCFDGSASFAFHQVNDDYCDCRD 87

Query: 65  SSDEPGTSACPNGTFHSHLLTRR 87
            SDEPGT+AC NG FH   L  R
Sbjct: 88  GSDEPGTAACNNGVFHCSNLGHR 110

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442757001|gb|JAA70659.1| Hypothetical protein [Ixodes ricinus]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 57/83 (68%), Gaps = 1/83 (1%)

Query: 5   VTLGVLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQD 64
           ++L +LF +  + S +V RPRGV L RASLY PA  F CFDGS +  F  VNDDYCDC+D
Sbjct: 23  ISLLLLFITA-VHSVEVSRPRGVPLARASLYDPAKNFPCFDGSASFAFLQVNDDYCDCRD 81

Query: 65  SSDEPGTSACPNGTFHSHLLTRR 87
            SDEPGT+AC NG FH   L  R
Sbjct: 82  GSDEPGTAACNNGVFHCSNLGHR 104

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348509185|ref|XP_003442132.1| PREDICTED: glucosidase 2 subunit beta-like [Oreochromis niloticus]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 51/68 (75%)

Query: 13 SIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTS 72
          S+ +++ +V RPRGV L +   Y+    FTC DGS TIPF  VNDDYCDCQD SDEPGT+
Sbjct: 12 SVGVSAVEVQRPRGVPLSKRQFYEEGKPFTCLDGSRTIPFDRVNDDYCDCQDGSDEPGTA 71

Query: 73 ACPNGTFH 80
          ACPNG+FH
Sbjct: 72 ACPNGSFH 79

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47220047|emb|CAG12195.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 47/61 (77%)

Query: 20 DVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTF 79
          +V RPRGVSL +   Y+    FTC DGS TIPF  VNDDYCDCQD+SDEPGT+ACPNG F
Sbjct: 11 EVQRPRGVSLSKRQFYEDGKPFTCLDGSKTIPFDRVNDDYCDCQDASDEPGTAACPNGNF 70

Query: 80 H 80
          H
Sbjct: 71 H 71

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
UNIPROTKB|K7EJ70	144	PRKCSH "Glucosidase 2 subunit	0.608	0.486	0.597	3.5e-20
UNIPROTKB|K7EKX1	140	PRKCSH "Glucosidase 2 subunit	0.608	0.5	0.597	3.5e-20
UNIPROTKB|K7EPW7	168	PRKCSH "Glucosidase 2 subunit	0.608	0.416	0.597	3.5e-20
FB|FBgn0032643	548	CG6453 [Drosophila melanogaste	0.556	0.116	0.671	1.8e-19
UNIPROTKB|P14314	528	PRKCSH "Glucosidase 2 subunit	0.608	0.132	0.597	2.1e-19
UNIPROTKB|K7ELL7	535	PRKCSH "Glucosidase 2 subunit	0.608	0.130	0.597	2.2e-19
MGI|MGI:107877	521	Prkcsh "protein kinase C subst	0.530	0.117	0.655	3.4e-19
RGD|1309628	525	Prkcsh "protein kinase C subst	0.530	0.116	0.655	5.7e-19
UNIPROTKB|Q28034	533	PRKCSH "Glucosidase 2 subunit	0.608	0.131	0.583	5.9e-19
UNIPROTKB|F1S596	537	PRKCSH "Uncharacterized protei	0.608	0.130	0.583	6e-19

UNIPROTKB|K7EJ70 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 43/72 (59%), Positives = 49/72 (68%)

Query:     9 VLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68
             +L    W    +V RPRGVSL     Y  +  FTC DGS TIPF  VNDDYCDC+D SDE
Sbjct:     7 LLLPMCWAV--EVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKDGSDE 64

Query:    69 PGTSACPNGTFH 80
             PGT+ACPNG+FH
Sbjct:    65 PGTAACPNGSFH 76

GO:0006491 "N-glycan processing" evidence=IEA

UNIPROTKB|K7EKX1 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 43/72 (59%), Positives = 49/72 (68%)

Query:     9 VLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68
             +L    W    +V RPRGVSL     Y  +  FTC DGS TIPF  VNDDYCDC+D SDE
Sbjct:     7 LLLPMCWAV--EVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKDGSDE 64

Query:    69 PGTSACPNGTFH 80
             PGT+ACPNG+FH
Sbjct:    65 PGTAACPNGSFH 76

GO:0006491 "N-glycan processing" evidence=IEA

UNIPROTKB|K7EPW7 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 43/72 (59%), Positives = 49/72 (68%)

Query:     9 VLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68
             +L    W    +V RPRGVSL     Y  +  FTC DGS TIPF  VNDDYCDC+D SDE
Sbjct:     7 LLLPMCWAV--EVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKDGSDE 64

Query:    69 PGTSACPNGTFH 80
             PGT+ACPNG+FH
Sbjct:    65 PGTAACPNGSFH 76

GO:0006491 "N-glycan processing" evidence=IEA

FB|FBgn0032643 CG6453 [Drosophila melanogaster (taxid:7227)]

 Score = 240 (89.5 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 45/67 (67%), Positives = 53/67 (79%)

Query:    17 TSSDVLRPRGVSLMRASLYQP-ASE--FTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSA 73
             ++S+V RP GV L +ASLYQP A E  +TC DGS TIPFS++NDDYCDC D SDEPGT+A
Sbjct:    25 SASEVPRPLGVPLAKASLYQPRAGENSWTCLDGSRTIPFSHINDDYCDCADGSDEPGTAA 84

Query:    74 CPNGTFH 80
             CP G FH
Sbjct:    85 CPQGQFH 91

GO:0017177 "glucosidase II complex" evidence=ISS

GO:0004558 "alpha-glucosidase activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|P14314 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 43/72 (59%), Positives = 49/72 (68%)

Query:     9 VLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68
             +L    W    +V RPRGVSL     Y  +  FTC DGS TIPF  VNDDYCDC+D SDE
Sbjct:     7 LLLPMCWAV--EVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKDGSDE 64

Query:    69 PGTSACPNGTFH 80
             PGT+ACPNG+FH
Sbjct:    65 PGTAACPNGSFH 76

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0005622 "intracellular" evidence=NAS

GO:0007243 "intracellular protein kinase cascade" evidence=NAS

GO:0005080 "protein kinase C binding" evidence=IPI

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

UNIPROTKB|K7ELL7 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 43/72 (59%), Positives = 49/72 (68%)

Query:     9 VLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68
             +L    W    +V RPRGVSL     Y  +  FTC DGS TIPF  VNDDYCDC+D SDE
Sbjct:     7 LLLPMCWAV--EVKRPRGVSLTNHHFYDESKPFTCLDGSATIPFDQVNDDYCDCKDGSDE 64

Query:    69 PGTSACPNGTFH 80
             PGT+ACPNG+FH
Sbjct:    65 PGTAACPNGSFH 76

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

MGI|MGI:107877 Prkcsh "protein kinase C substrate 80K-H" [Mus musculus (taxid:10090)]

 Score = 237 (88.5 bits), Expect = 3.4e-19, P = 3.4e-19
 Identities = 40/61 (65%), Positives = 47/61 (77%)

Query:    20 DVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTF 79
             +V RPRGVSL     Y+ +  FTC DG+ TIPF  VNDDYCDC+D SDEPGT+ACPNG+F
Sbjct:    16 EVKRPRGVSLSNHHFYEESKPFTCLDGTATIPFDQVNDDYCDCKDGSDEPGTAACPNGSF 75

Query:    80 H 80
             H
Sbjct:    76 H 76

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001889 "liver development" evidence=IGI

GO:0003723 "RNA binding" evidence=IDA

GO:0005080 "protein kinase C binding" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006491 "N-glycan processing" evidence=TAS

GO:0006807 "nitrogen compound metabolic process" evidence=IGI

GO:0010977 "negative regulation of neuron projection development" evidence=IMP

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0017177 "glucosidase II complex" evidence=IPI

GO:0046872 "metal ion binding" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0072001 "renal system development" evidence=IGI

RGD|1309628 Prkcsh "protein kinase C substrate 80K-H" [Rattus norvegicus (taxid:10116)]

 Score = 235 (87.8 bits), Expect = 5.7e-19, P = 5.7e-19
 Identities = 40/61 (65%), Positives = 46/61 (75%)

Query:    20 DVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTF 79
             +V RPRGVSL     Y  +  FTC DG+ TIPF  VNDDYCDC+D SDEPGT+ACPNG+F
Sbjct:    15 EVKRPRGVSLSNHHFYDESKPFTCLDGTATIPFDQVNDDYCDCKDGSDEPGTAACPNGSF 74

Query:    80 H 80
             H
Sbjct:    75 H 75

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001889 "liver development" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA;ISO

GO:0005080 "protein kinase C binding" evidence=IEA;ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=TAS

GO:0006491 "N-glycan processing" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=ISO

GO:0010977 "negative regulation of neuron projection development" evidence=IEA;ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0017177 "glucosidase II complex" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=IPI

GO:0072001 "renal system development" evidence=ISO

UNIPROTKB|Q28034 PRKCSH "Glucosidase 2 subunit beta" [Bos taurus (taxid:9913)]

 Score = 235 (87.8 bits), Expect = 5.9e-19, P = 5.9e-19
 Identities = 42/72 (58%), Positives = 49/72 (68%)

Query:     9 VLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68
             +L    W    +V RPRGVSL     Y  +  FTC DGS +IPF  VNDDYCDC+D SDE
Sbjct:     6 LLLPMCWAV--EVRRPRGVSLTNHHFYDESKPFTCLDGSASIPFDQVNDDYCDCKDGSDE 63

Query:    69 PGTSACPNGTFH 80
             PGT+ACPNG+FH
Sbjct:    64 PGTAACPNGSFH 75

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0005080 "protein kinase C binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1S596 PRKCSH "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 235 (87.8 bits), Expect = 6.0e-19, P = 6.0e-19
 Identities = 42/72 (58%), Positives = 49/72 (68%)

Query:     9 VLFSSIWLTSSDVLRPRGVSLMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68
             +L    W    +V RPRGVSL     Y  +  FTC DGS +IPF  VNDDYCDC+D SDE
Sbjct:     6 LLLPMCWAV--EVKRPRGVSLTNHHFYDESKPFTCLDGSASIPFDQVNDDYCDCKDGSDE 63

Query:    69 PGTSACPNGTFH 80
             PGT+ACPNG+FH
Sbjct:    64 PGTAACPNGSFH 75

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0005080 "protein kinase C binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28034	GLU2B_BOVIN	No assigned EC number	0.6557	0.5304	0.1144	yes	N/A
P14314	GLU2B_HUMAN	No assigned EC number	0.6721	0.5304	0.1155	yes	N/A
O08795	GLU2B_MOUSE	No assigned EC number	0.6557	0.5304	0.1170	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	115
pfam12999	176	pfam12999, PRKCSH-like, Glucosidase II beta subuni	5e-19
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	0.001

>gnl|CDD|193472 pfam12999, PRKCSH-like, Glucosidase II beta subunit-like

 Score = 77.1 bits (190), Expect = 5e-19
 Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 5  VTLGVLFSSIWLTSSDVLRPRGVSLMRASLYQPASE--FTCF-DGSLTIPFSYVNDDYCD 61
          +   +L  S+ L +  + + RGVS     LYQP     + C     + + F  VNDDYCD
Sbjct: 1  LLQPLLAISL-LVAIALGKLRGVSPDNLHLYQPDENGNWKCLNHSEIKLSFDQVNDDYCD 59

Query: 62 CQDSSDEPGTSACPNGTFH 80
          C D SDEPGT+AC NG F+
Sbjct: 60 CPDGSDEPGTNACSNGKFY 78

The sequences found in this family are similar to a region found in the beta-subunit of glucosidase II, which is also known as protein kinase C substrate 80K-H (PRKCSH). The enzyme catalyzes the sequential removal of two alpha-1,3-linked glucose residues in the second step of N-linked oligosaccharide processing. The beta subunit is required for the solubility and stability of the heterodimeric enzyme, and is involved in retaining the enzyme within the endoplasmic reticulum. Length = 176

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 34.1 bits (79), Expect = 0.001
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68
          P  EF C +G   IP S+V D   DC D SDE
Sbjct: 3  PPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	100.0
KOG2397|consensus	480		99.92
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	99.13
KOG2397|consensus	480		98.72
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	98.6
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	98.59
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.44
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	95.21
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	95.17
smart00192	33	LDLa Low-density lipoprotein receptor domain class	93.83
KOG1215|consensus	877		93.56
KOG1215|consensus	877		89.73

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=100.00  E-value=9.6e-37  Score=234.93  Aligned_cols=82  Identities=48%  Similarity=0.759  Sum_probs=77.5

Q ss_pred             ccCCCccCCcccccccCC--CCcEEeCCCCce-eccCcccCCcCCCCCCCCCCCCCCCCCCceecccCCceeeeeeccce
Q psy2512          20 DVLRPRGVSLMRASLYQP--ASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHLLTRRFLIQISAKT   96 (115)
Q Consensus        20 ~~~~~rGv~p~~~~~Y~~--~g~F~C~~gs~~-I~~s~vNDg~CDC~DGSDEpgt~aC~~~~FyC~n~g~~p~~Ipssrv   96 (115)
                      .+.++|||+|+++++|++  ++.|+|++++.. |++++||||||||+||||||||+||++++|||+|+||+|++||+++|
T Consensus        15 ~~~~~~GV~p~~~~~Y~~~~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGTsAC~~~~FyC~N~g~~p~~i~~s~V   94 (176)
T PF12999_consen   15 ASSRIRGVSPSDQHLYEPSENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGTSACSNGKFYCENKGHIPRYIPSSRV   94 (176)
T ss_pred             ccCCCCCCCHHHHHHcCCCCCCceEecCCCCceecHHHccCcceeCCCCCCccccccCcCceEeeccCCCCCceeehhhh
Confidence            478999999999999997  579999998655 99999999999999999999999999999999999999999999999


Q ss_pred             ecCCC
Q psy2512          97 WNSSS  101 (115)
Q Consensus        97 ~DG~~  101 (115)
                      .||+=
T Consensus        95 nDGIC   99 (176)
T PF12999_consen   95 NDGIC   99 (176)
T ss_pred             cCCcC
Confidence            99984

>KOG2397|consensus

Probab=99.92  E-value=1.3e-25  Score=193.30  Aligned_cols=93  Identities=40%  Similarity=0.615  Sum_probs=80.0

Q ss_pred             HHHHHHhhhccccCCCccCC--cccccccCCCCcEEeCCCCceeccCcccCCcCCCCCCCCCCCCCCCCCCceecccCCc
Q psy2512           9 VLFSSIWLTSSDVLRPRGVS--LMRASLYQPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHLLTR   86 (115)
Q Consensus         9 ~l~~~~~~~~~~~~~~rGv~--p~~~~~Y~~~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt~aC~~~~FyC~n~g~   86 (115)
                      +|+++...++....+.+||+  ..++++|+++..|+|++++..|+++++||+||||.||||||||+||+|+.|||.|.||
T Consensus        11 ~ll~sp~~aa~~~~~~~~v~~~~~~~~~y~as~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGtsACpngkF~C~N~G~   90 (480)
T KOG2397|consen   11 ALLASPLGAAKQLRKDWGVALSIENLYLYDASSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGTSACPNGKFYCVNQGH   90 (480)
T ss_pred             HhhhcchhhhhccccccccccccccccccccccceeeccCCcccCHHHhccccccCCCCCCCCccccCCCCceeeeecCC
Confidence            33444444445566666654  5588888889999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeccceecCCC
Q psy2512          87 RFLIQISAKTWNSSS  101 (115)
Q Consensus        87 ~p~~Ipssrv~DG~~  101 (115)
                      +|.+|++++|-||+=
T Consensus        91 ~p~~i~ssrV~DGIC  105 (480)
T KOG2397|consen   91 QPKYIPSSRVNDGIC  105 (480)
T ss_pred             CceeeechhccCccc
Confidence            999999999999973

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=99.13  E-value=2.2e-11  Score=94.38  Aligned_cols=44  Identities=45%  Similarity=0.771  Sum_probs=37.9

Q ss_pred             CCcEEeCC-C--CceeccCcccCCcCC---CCCCCCCCCCCCCCCCceecccCC
Q psy2512          38 ASEFTCFD-G--SLTIPFSYVNDDYCD---CQDSSDEPGTSACPNGTFHSHLLT   85 (115)
Q Consensus        38 ~g~F~C~~-g--s~~I~~s~vNDg~CD---C~DGSDEpgt~aC~~~~FyC~n~g   85 (115)
                      +++|||.| |  +..||.++||||+||   |+||||| +...|+|   .|.+.+
T Consensus        74 ~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE-~~~~C~N---~C~e~~  123 (176)
T PF12999_consen   74 NGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDE-SGGKCPN---TCAELG  123 (176)
T ss_pred             CceEeeccCCCCCceeehhhhcCCcCcccccCCCCCC-CCCCCcc---HHHHHH
Confidence            47999999 5  578999999999999   9999999 4457999   887654

>KOG2397|consensus

Probab=98.72  E-value=4.4e-09  Score=91.63  Aligned_cols=48  Identities=46%  Similarity=0.761  Sum_probs=41.0

Q ss_pred             CCCcEEeCC-C--CceeccCcccCCcCCCCCCCCCCCC-CCCCCCceecccCCce
Q psy2512          37 PASEFTCFD-G--SLTIPFSYVNDDYCDCQDSSDEPGT-SACPNGTFHSHLLTRR   87 (115)
Q Consensus        37 ~~g~F~C~~-g--s~~I~~s~vNDg~CDC~DGSDEpgt-~aC~~~~FyC~n~g~~   87 (115)
                      ++|+|||.| |  +..|+.++||||+|||+|||||..+ -.|+|   .|...|..
T Consensus        79 pngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~Sgv~c~n---tC~e~gR~  130 (480)
T KOG2397|consen   79 PNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYLSGVDCPN---TCIELGRA  130 (480)
T ss_pred             CCCceeeeecCCCceeeechhccCcccccccCCCCccCCCCCcc---hHHHHHHH
Confidence            379999999 5  6799999999999999999999877 48988   78766543

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=98.60  E-value=2.9e-08  Score=58.07  Aligned_cols=32  Identities=47%  Similarity=0.762  Sum_probs=28.7

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .+.|+|.++ .+||.+++||++-||+|||||..
T Consensus         3 ~~~f~C~~~-~Ci~~~~~CDg~~DC~dgsDE~~   34 (35)
T cd00112           3 PNEFRCANG-RCIPSSWVCDGEDDCGDGSDEEN   34 (35)
T ss_pred             CCeEEcCCC-CeeCHHHcCCCccCCCCCccccc
Confidence            468999984 59999999999999999999963

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.59  E-value=5e-08  Score=58.04  Aligned_cols=32  Identities=47%  Similarity=0.780  Sum_probs=29.5

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .+.|+|.++. +|+..++||++-||.|||||.+
T Consensus         5 ~~~f~C~~~~-CI~~~~~CDg~~DC~dgsDE~~   36 (37)
T PF00057_consen    5 PGEFRCGNGQ-CIPKSWVCDGIPDCPDGSDEQN   36 (37)
T ss_dssp             TTEEEETTSS-EEEGGGTTSSSCSSSSSTTTSS
T ss_pred             CCeeEcCCCC-EEChHHcCCCCCCCCCCccccc
Confidence            5789999987 9999999999999999999953

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.44  E-value=1.5e-07  Score=54.25  Aligned_cols=29  Identities=52%  Similarity=0.920  Sum_probs=26.9

Q ss_pred             CcEEeCCCCceeccCcccCCcCCCCCCCCC
Q psy2512          39 SEFTCFDGSLTIPFSYVNDDYCDCQDSSDE   68 (115)
Q Consensus        39 g~F~C~~gs~~I~~s~vNDg~CDC~DGSDE   68 (115)
                      ++|+|.++. +||..++||++-||.|||||
T Consensus         5 ~~f~C~~~~-Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        5 GEFQCDNGR-CIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CeEECCCCC-EECchhhCCCcCcCcCCCCC
Confidence            489998766 99999999999999999999

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=95.21  E-value=0.015  Score=34.30  Aligned_cols=26  Identities=15%  Similarity=0.204  Sum_probs=23.1

Q ss_pred             CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .|+.+.|.|.++    .+|+..+++||+..
T Consensus         2 ~C~~~~f~C~~~----~CI~~~~~CDg~~D   27 (37)
T PF00057_consen    2 TCPPGEFRCGNG----QCIPKSWVCDGIPD   27 (37)
T ss_dssp             SSSTTEEEETTS----SEEEGGGTTSSSCS
T ss_pred             cCcCCeeEcCCC----CEEChHHcCCCCCC
Confidence            588999999988    49999999999864

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=95.17  E-value=0.011  Score=34.37  Aligned_cols=25  Identities=16%  Similarity=0.178  Sum_probs=21.7

Q ss_pred             CCCCceecccCCceeeeeeccceecCCCC
Q psy2512          74 CPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        74 C~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      |+..+|.|.++    .+|+.++++||+..
T Consensus         1 C~~~~f~C~~~----~Ci~~~~~CDg~~D   25 (35)
T cd00112           1 CPPNEFRCANG----RCIPSSWVCDGEDD   25 (35)
T ss_pred             CCCCeEEcCCC----CeeCHHHcCCCccC
Confidence            66789999985    89999999999864

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=93.83  E-value=0.036  Score=31.60  Aligned_cols=25  Identities=16%  Similarity=0.211  Sum_probs=20.9

Q ss_pred             CCCCceecccCCceeeeeeccceecCCCC
Q psy2512          74 CPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        74 C~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      |+...|.|.++    .+||..+++||+..
T Consensus         2 C~~~~f~C~~~----~Ci~~~~~Cdg~~d   26 (33)
T smart00192        2 CPPGEFQCDNG----RCIPLSWVCDGVDD   26 (33)
T ss_pred             CCCCeEECCCC----CEECchhhCCCcCc
Confidence            66679999966    69999999999853

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>KOG1215|consensus

Probab=93.56  E-value=0.099  Score=47.53  Aligned_cols=73  Identities=19%  Similarity=0.155  Sum_probs=54.9

Q ss_pred             cCCcccccccCCC----CcEEeCCCCceeccCcccCCcCCCCCCCCCC--CC--CCCCCCceecccCCceeeeeecccee
Q psy2512          26 GVSLMRASLYQPA----SEFTCFDGSLTIPFSYVNDDYCDCQDSSDEP--GT--SACPNGTFHSHLLTRRFLIQISAKTW   97 (115)
Q Consensus        26 Gv~p~~~~~Y~~~----g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEp--gt--~aC~~~~FyC~n~g~~p~~Ipssrv~   97 (115)
                      |..+.....|...    ..+.|..+..+|..++.+|+.-||.|++||-  ..  .+|....|.|.+.    .+++..+.+
T Consensus       204 ~~d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~----~~~~~~~~~  279 (877)
T KOG1215|consen  204 DYDESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADG----DCSDRQKLC  279 (877)
T ss_pred             ccccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCC----CCccceEEe
Confidence            4455555555442    5788988778999999999999999999994  11  4677778999776    577777778


Q ss_pred             cCCCC
Q psy2512          98 NSSSQ  102 (115)
Q Consensus        98 DG~~~  102 (115)
                      ||...
T Consensus       280 ~g~~d  284 (877)
T KOG1215|consen  280 DGDLD  284 (877)
T ss_pred             cCccC
Confidence            88764

>KOG1215|consensus

Probab=89.73  E-value=0.2  Score=45.60  Aligned_cols=34  Identities=35%  Similarity=0.630  Sum_probs=28.8

Q ss_pred             CCcEEeCCC-CceeccCcccCCcCCCCCCCCCCCC
Q psy2512          38 ASEFTCFDG-SLTIPFSYVNDDYCDCQDSSDEPGT   71 (115)
Q Consensus        38 ~g~F~C~~g-s~~I~~s~vNDg~CDC~DGSDEpgt   71 (115)
                      ...|.|..+ .++||..+.||+-.||.||+||...
T Consensus       140 ~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~~  174 (877)
T KOG1215|consen  140 LDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELNC  174 (877)
T ss_pred             CCCCCCcCccccCCCCceeCCCCCccccchhhhcc
Confidence            357888853 5699999999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	7e-07
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	2e-06
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	7e-06
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	1e-05
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	2e-05
1cr8_A	42	Protein (LOW density lipoprotein receptor related	5e-04

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 42.9 bits (101), Expect = 7e-07
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSH 82
            S F+C    + +P  ++ D   DC D +DE   + C   +  S 
Sbjct: 10 GPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSG 55

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 40.8 bits (96), Expect = 2e-06
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNG 77
           +++F C DGS  I   Y  D   DC+D+SDE G    P G
Sbjct: 8  TSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRPPG 48

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 39.3 bits (92), Expect = 7e-06
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSAC-PNGT 78
            S F+C    + +P  ++ D   DC D +DE   + C  N T
Sbjct: 8  GPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNST 50

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 39.2 bits (92), Expect = 1e-05
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE----PGTSACPNGTFH 80
          P ++F+C  G   IP S+  D   DC D SDE       +  P   F 
Sbjct: 6  PPNQFSCASGR-CIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFT 52

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 38.8 bits (91), Expect = 2e-05
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG--TSACPNGTFH 80
            +EF C DG   I   +V D   DC D SDE       C   +F 
Sbjct: 4  SQAEFRCHDGK-CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQ 48

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 34.2 bits (79), Expect = 5e-04
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPN 76
             EF C    L IP  +  D   DC DSSDE     C  
Sbjct: 5  HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS---CEG 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.46
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.43
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.92
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	98.9
2xrc_A	565	Human complement factor I; immune system, hydrolas	98.82
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.78
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	98.76
1cr8_A	42	Protein (LOW density lipoprotein receptor related	98.75
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	98.74
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	98.73
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	98.73
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	98.7
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	98.68
3a7q_B	44	Low-density lipoprotein receptor-related protein;	98.64
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	98.64
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.63
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.61
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	98.59
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	98.57
2m0p_A	52	Low-density lipoprotein receptor-related protein;	98.53
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	98.29
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	98.23
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	98.18
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	97.96
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	97.94
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	97.73
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	97.62
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	97.05
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	96.99
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	96.55
1cr8_A	42	Protein (LOW density lipoprotein receptor related	95.99
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	95.95
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	95.68
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	95.67
2xrc_A	565	Human complement factor I; immune system, hydrolas	95.53
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	95.36
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	95.3
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	95.11
3a7q_B	44	Low-density lipoprotein receptor-related protein;	95.06
2m0p_A	52	Low-density lipoprotein receptor-related protein;	94.62
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	94.58
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	94.26
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	94.13
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	88.33

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.46  E-value=3.2e-14  Score=95.52  Aligned_cols=59  Identities=27%  Similarity=0.463  Sum_probs=53.3

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCCCC--CCCCCceecccCCceeeeeeccceecCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTS--ACPNGTFHSHLLTRRFLIQISAKTWNSSS  101 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt~--aC~~~~FyC~n~g~~p~~Ipssrv~DG~~  101 (115)
                      .++|+|.+|. +||.++|||++-||.|||||.++.  .|+..+|+|.++    ++||.++++||+.
T Consensus         5 ~~~F~C~~g~-CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~   65 (80)
T 2fcw_B            5 QAEFRCHDGK-CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDP   65 (80)
T ss_dssp             TTEEECTTSC-EEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTS----CEEEGGGTTSSSC
T ss_pred             CCccCCCCCC-EEeeecccCCcccCCCcccccccccccCCceeeECCCC----CEEecccccCCCc
Confidence            5789999875 999999999999999999998753  688899999986    7999999999985

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.43  E-value=1.5e-13  Score=92.13  Aligned_cols=60  Identities=25%  Similarity=0.362  Sum_probs=52.1

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCC-CCC--CCCC-CCceecccCCceeeeeeccceecCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE-PGT--SACP-NGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDE-pgt--~aC~-~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .++|+|.+|. +||.+++|||+-||.||||| .++  ..|. ..+|+|.|+    ++|+.++++||+.-
T Consensus         7 ~~~f~C~~g~-Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g----~CI~~~~~CDG~~D   70 (82)
T 2fyj_A            7 PNQFSCASGR-CIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG----RCININWRCDNDND   70 (82)
T ss_dssp             TTEEETTSSC-EEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTS----CEEETTCBSSSSBC
T ss_pred             CCceEeCCCC-EEeccccCCCcccCCCccccccccccccCCCCCceECCCC----CeEcHHHccCCCCc
Confidence            5789999875 99999999999999999999 554  3684 489999986    79999999999853

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.92  E-value=4.7e-10  Score=96.57  Aligned_cols=61  Identities=25%  Similarity=0.410  Sum_probs=46.0

Q ss_pred             CCcEEeCCC-CceeccCcccCCcCCCCCCCCCCCCC--CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          38 ASEFTCFDG-SLTIPFSYVNDDYCDCQDSSDEPGTS--ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        38 ~g~F~C~~g-s~~I~~s~vNDg~CDC~DGSDEpgt~--aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .+.|.|.++ .++||.+++||+..||.|||||.++.  .|+..+|+|.++    ++|+.++++||...
T Consensus        49 ~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~Cdg~~d  112 (699)
T 1n7d_A           49 SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDG----KCISRQFVCDSDRD  112 (699)
T ss_dssp             SSSCCCCC--CCCCCSSSTTSSSCCC-CCCTTTSCSSCCCCSSCCCSSCC--------CCCTTCSSCC
T ss_pred             CCccCCCCCCCceeCcceecCCcccCCCCcccCcccccccccCcEEcCCC----CEecHHHcCCCcCc
Confidence            578999886 47899999999999999999998764  688889999876    68999999998753

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=98.90  E-value=2.5e-10  Score=76.71  Aligned_cols=57  Identities=23%  Similarity=0.227  Sum_probs=43.4

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC---C---CCCCCCceecccCCceeeeeeccce
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG---T---SACPNGTFHSHLLTRRFLIQISAKT   96 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg---t---~aC~~~~FyC~n~g~~p~~Ipssrv   96 (115)
                      ++.|+|.+...+||.+++|||..||.|||||..   +   ..|....|.|.+.  .-..|+..+.
T Consensus        11 ~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~--~~~ci~~~~~   73 (80)
T 2kny_A           11 PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEE--LRVRLASHLR   73 (80)
T ss_dssp             SSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHH--HHHHTTTTTT
T ss_pred             CCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhH--HHHHHHHHHH
Confidence            678999975569999999999999999999974   2   3577788999873  1134554443

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=98.82  E-value=2.2e-09  Score=91.07  Aligned_cols=59  Identities=29%  Similarity=0.371  Sum_probs=52.5

Q ss_pred             CcEEeCCCCceeccCcccCCcCCCCCCCCCCCCCCCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          39 SEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        39 g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .+|.|.++. +|+..++|||.-||.|||||.++..|+...|+|.++    .+|+...++||+..
T Consensus       207 ~~~~C~~~~-ci~~~~~Cdg~~dC~d~sDE~~C~~c~~~~~~C~~~----~C~~~~~~cdG~~d  265 (565)
T 2xrc_A          207 DFFQCVNGK-YISQMKACDGINDCGDQSDELCCKACQGKGFHCKSG----VCIPSQYQCNGEVD  265 (565)
T ss_dssp             --CBCTTSC-BCCTTSTTSSSCCSSSSSSSSSBSSCSSSCEEETTT----EEECGGGTTSSSCC
T ss_pred             CeeECCCCC-ccCHHHcCCCcccCCCCcccccccccCCCceecCCC----cccCccccCCCccc
Confidence            459998775 999999999999999999999887899999999987    69999999999865

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.78  E-value=2.3e-09  Score=92.28  Aligned_cols=60  Identities=27%  Similarity=0.457  Sum_probs=50.1

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCCCC--CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTS--ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt~--aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .++|+|.++. +|+.+++||+..||.|||||.++.  .|+...|.|.++    ++|+..++|||...
T Consensus        90 ~~~f~C~~g~-Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~~----~Ci~~~~~Cdg~~d  151 (699)
T 1n7d_A           90 QDEFRCHDGK-CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDPD  151 (699)
T ss_dssp             SSCCCSSCC-----CCCTTCSSCCSSSSCSSSSCCCCCCCSSCCCCSSS----CCCCTTSTTCSSCC
T ss_pred             cCcEEcCCCC-EecHHHcCCCcCcCCCCCccCCcCccccCccccCCCCC----cccchhcccCCCCc
Confidence            5789998875 999999999999999999998763  698899999876    79999999999863

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=98.76  E-value=5.3e-09  Score=62.63  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=29.8

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .+.|+|.++..+||.+++||+.-||.|||||.+
T Consensus         9 ~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~   41 (43)
T 2jm4_A            9 LGYFPCGNITKCLPQLLHCNGVDDCGNQADEDN   41 (43)
T ss_dssp             TTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSS
T ss_pred             CCeeECCCCCeEcCHhhccCCCCCCCCCcccCC
Confidence            578999995569999999999999999999974

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=98.75  E-value=5.9e-09  Score=62.17  Aligned_cols=33  Identities=42%  Similarity=0.683  Sum_probs=29.5

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .+.|+|.+...+||.+++||+.-||.|||||.+
T Consensus         6 ~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~   38 (42)
T 1cr8_A            6 TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS   38 (42)
T ss_dssp             TTCEECTTTCCEECGGGSSSSSCCSSSSTTTTT
T ss_pred             CCceEeCCCCeEcChhhcCCCCcCCCCCCcccC
Confidence            578999975569999999999999999999964

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=98.74  E-value=2e-09  Score=65.90  Aligned_cols=33  Identities=45%  Similarity=0.799  Sum_probs=30.6

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      +++|+|.++..+|+.+++||+.-||.|||||.+
T Consensus         9 ~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~   41 (48)
T 2i1p_A            9 SAQFKCADGSSCINSRYRCDGVYDCRDNSDEAG   41 (48)
T ss_dssp             SSSEECSSSSCEECGGGSSSSSCCSSSSHHHHS
T ss_pred             CCeeECCCCCEeCCHhhcCCCCCCCCCCccccc
Confidence            578999998679999999999999999999975

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=98.73  E-value=4.7e-09  Score=65.12  Aligned_cols=38  Identities=29%  Similarity=0.586  Sum_probs=31.9

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACP   75 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt~aC~   75 (115)
                      +++|+|.+...+||.+++||+.-||.|||||..+..|+
T Consensus         9 ~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~C~~C~   46 (50)
T 2knx_A            9 PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCL   46 (50)
T ss_dssp             TTEEEETTTTEEEETTTTTSSSCCSTTCGGGSGGGTCC
T ss_pred             CCcEEcCCCCeEcChhhcCCCCCCCCCCCccccccCCC
Confidence            67999974446999999999999999999997654554

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=98.73  E-value=3e-09  Score=64.53  Aligned_cols=33  Identities=30%  Similarity=0.572  Sum_probs=29.2

Q ss_pred             CCcEEeCC----CCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFD----GSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~----gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      +++|+|.+    ...+||.+++||++.||.|||||.+
T Consensus         7 ~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~   43 (47)
T 1jrf_A            7 PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   43 (47)
T ss_dssp             CCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHH
T ss_pred             CCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCccccc
Confidence            67899985    3569999999999999999999964

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=98.70  E-value=7.9e-09  Score=60.03  Aligned_cols=32  Identities=44%  Similarity=0.661  Sum_probs=29.1

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .+.|+|.+|. +|+.+++||+.-||.|||||.+
T Consensus         4 ~~~f~C~~g~-Ci~~~~~CDg~~DC~DgsDE~~   35 (37)
T 1ajj_A            4 AFEFHCLSGE-CIHSSWRCDGGPDCKDKSDEEN   35 (37)
T ss_dssp             TTCEECTTSC-EECGGGTTSSSCCSTTCGGGTT
T ss_pred             CCceEcCCCC-eechhhccCCCCCCCCCccccC
Confidence            5789999874 9999999999999999999975

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=98.68  E-value=9.7e-09  Score=60.35  Aligned_cols=33  Identities=30%  Similarity=0.524  Sum_probs=29.6

Q ss_pred             CCcEEeCC-CCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFD-GSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~-gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      +++|+|.+ ..++||.+++||+.-||.|||||.+
T Consensus         3 ~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~   36 (39)
T 3dpr_E            3 IHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN   36 (39)
T ss_dssp             TTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTT
T ss_pred             CCceecCCCCCCEeCccccCCCcccCcCCccccc
Confidence            56899998 3569999999999999999999975

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=98.64  E-value=2e-08  Score=60.36  Aligned_cols=32  Identities=34%  Similarity=0.587  Sum_probs=29.2

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .+.|+|.++. +||.+++||+.-||.|||||.+
T Consensus        10 ~~~f~C~~g~-CI~~~~~CDg~~DC~DgSDE~~   41 (44)
T 3a7q_B           10 KDQFQCRNER-CIPSVWRCDEDDDCLDHSDEDD   41 (44)
T ss_dssp             TTEEECTTSC-EEEGGGTTSSSCCSSSSTTTSC
T ss_pred             CCceEcCCCC-EeChhhccCCCCCCCCCccccC
Confidence            5789999864 9999999999999999999974

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=98.64  E-value=2.1e-08  Score=61.00  Aligned_cols=33  Identities=33%  Similarity=0.521  Sum_probs=29.7

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGT   71 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt   71 (115)
                      .+.|+|.++ .+||.+++|||.-||.|||||...
T Consensus         8 ~~~F~C~~g-~CI~~~~~CDG~~DC~DgSDE~~c   40 (45)
T 1d2l_A            8 PGEFACANS-RCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             BTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             CCceEcCCC-CeEehhhccCCCCCCCCCCCCCCC
Confidence            578999987 499999999999999999999753

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.63  E-value=3.6e-09  Score=93.52  Aligned_cols=61  Identities=25%  Similarity=0.410  Sum_probs=0.0

Q ss_pred             CCcEEeCCC-CceeccCcccCCcCCCCCCCCCCCCC--CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          38 ASEFTCFDG-SLTIPFSYVNDDYCDCQDSSDEPGTS--ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        38 ~g~F~C~~g-s~~I~~s~vNDg~CDC~DGSDEpgt~--aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .+.|.|.++ ..+||..++||+.-||.|||||.++.  .|+..+|.|.++    ++|+.+++|||...
T Consensus        67 ~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~d  130 (791)
T 3m0c_C           67 SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDG----KCISRQFVCDSDRD  130 (791)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             cCccccCCCCCCEeeccccCCCCcCcCCCcccCCccCccccCCeEECCCC----CEECHHHcCCCccc
Confidence            578999883 56999999999999999999998874  588899999986    79999999999763

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.61  E-value=4.3e-09  Score=92.98  Aligned_cols=61  Identities=28%  Similarity=0.437  Sum_probs=0.0

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC--C--CCCCCCceecccCCceeeeeeccceecCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG--T--SACPNGTFHSHLLTRRFLIQISAKTWNSSS  101 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg--t--~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~  101 (115)
                      .++|.|.+|. +|+.+++|||.-||.|||||..  +  ..|+...|.|.+.  ..++||..++|||..
T Consensus        26 ~~~f~C~~g~-Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~~~~f~C~~~--~~~Ci~~~~~CDg~~   90 (791)
T 3m0c_C           26 RNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGR--VNRCIPQFWRCDGQV   90 (791)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             cCccCCCCCC-EEehhhcCCCCccCCCCCcccccccccCccCcCccccCCC--CCCEeeccccCCCCc
Confidence            6799999885 9999999999999999999976  2  3688899999983  238999999999975

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=98.59  E-value=1.4e-08  Score=61.66  Aligned_cols=33  Identities=30%  Similarity=0.572  Sum_probs=29.1

Q ss_pred             CCcEEeCC----CCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFD----GSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~----gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .++|+|.+    ...+||.+++||+.-||.|||||.+
T Consensus         9 ~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~   45 (47)
T 1k7b_A            9 PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   45 (47)
T ss_dssp             TTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred             CCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCC
Confidence            67999984    3469999999999999999999964

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=98.57  E-value=2.1e-08  Score=60.30  Aligned_cols=32  Identities=38%  Similarity=0.661  Sum_probs=29.3

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .+.|+|.++. +||..++||+.-||.|||||..
T Consensus         7 ~~~F~C~~g~-CI~~~~~CDg~~DC~DgSDE~~   38 (44)
T 1j8e_A            7 STQFKCNSGR-CIPEHWTCDGDNDCGDYSDETH   38 (44)
T ss_dssp             TTEEECTTSC-EEEGGGTTSSSCCSSSSGGGSH
T ss_pred             CCceEeCCCC-eEecCcccCCCCCCCCCCCCCC
Confidence            5789999875 9999999999999999999964

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=98.53  E-value=1.7e-08  Score=63.63  Aligned_cols=32  Identities=34%  Similarity=0.588  Sum_probs=29.4

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .++|.|.+|. +||.+++|||.-||.|||||.+
T Consensus         9 ~~~F~C~nG~-CIp~~~~CDG~~DC~DgSDE~~   40 (52)
T 2m0p_A            9 DTQYTCDNHQ-CISKNWVCDTDNDCGDGSDEKN   40 (52)
T ss_dssp             SSEEECTTCC-EEETTSTTSSSCSSSSCHHHHS
T ss_pred             CCceECCCCC-EEecCccCCCCCCCCCCCcccc
Confidence            5789999885 9999999999999999999965

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=98.29  E-value=4.6e-07  Score=60.41  Aligned_cols=32  Identities=41%  Similarity=0.769  Sum_probs=29.3

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .+.|+|.++. +|+.+++|||.-||.|||||.+
T Consensus        48 ~~~f~C~~g~-CI~~~~~CDG~~DC~DgSDE~~   79 (82)
T 2fyj_A           48 LTQFTCNNGR-CININWRCDNDNDCGDNSDEAG   79 (82)
T ss_dssp             SSEEECTTSC-EEETTCBSSSSBCCSSSSSCSC
T ss_pred             CCceECCCCC-eEcHHHccCCCCcCCCCccccC
Confidence            4899999875 9999999999999999999975

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=98.23  E-value=4.3e-07  Score=60.57  Aligned_cols=31  Identities=35%  Similarity=0.621  Sum_probs=28.6

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEP   69 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEp   69 (115)
                      .+.|+|.++. +||.+++|||..||.|||||.
T Consensus        44 ~~~f~C~~g~-Ci~~~~~CDg~~DC~dgsDE~   74 (80)
T 2fcw_B           44 PASFQCNSST-CIPQLWACDNDPDCEDGSDEW   74 (80)
T ss_dssp             TTEEECTTSC-EEEGGGTTSSSCCSTTCGGGC
T ss_pred             ceeeECCCCC-EEecccccCCCcCCCCCCCcC
Confidence            5799998875 999999999999999999994

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.18  E-value=4.3e-07  Score=71.06  Aligned_cols=45  Identities=24%  Similarity=0.384  Sum_probs=37.5

Q ss_pred             CCcEEeC-CCCceeccCcccCCcCCCCCCCCCCCC--CCCCCCceecc
Q psy2512          38 ASEFTCF-DGSLTIPFSYVNDDYCDCQDSSDEPGT--SACPNGTFHSH   82 (115)
Q Consensus        38 ~g~F~C~-~gs~~I~~s~vNDg~CDC~DGSDEpgt--~aC~~~~FyC~   82 (115)
                      .+.|+|. +...+||.+++|||.-||.|||||.++  ..|+...|.|.
T Consensus        57 ~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~~~~C~~~~F~c~  104 (215)
T 2gtl_O           57 EHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGD  104 (215)
T ss_dssp             TTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCCCSSCTTCEEEEE
T ss_pred             CcceeeCCCCCcCccccccCCCCCcCCCcccccCCCCCCcCCCceeee
Confidence            5789994 233599999999999999999999876  36888888874

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=97.96  E-value=5.4e-06  Score=65.37  Aligned_cols=46  Identities=24%  Similarity=0.220  Sum_probs=34.7

Q ss_pred             CCcEEeCC-CCceeccCcccCCcCCCCCCCCCC--CC--C-CCCCC--ceeccc
Q psy2512          38 ASEFTCFD-GSLTIPFSYVNDDYCDCQDSSDEP--GT--S-ACPNG--TFHSHL   83 (115)
Q Consensus        38 ~g~F~C~~-gs~~I~~s~vNDg~CDC~DGSDEp--gt--~-aC~~~--~FyC~n   83 (115)
                      .+.|+|.+ ...+||..++|||.-||.|||||.  .+  . .|+..  ++.|.+
T Consensus        55 ~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~  108 (220)
T 2gtl_N           55 KRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTW  108 (220)
T ss_dssp             TTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEE
T ss_pred             CCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecC
Confidence            57999964 456999999999999999999995  33  3 55443  345654

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=97.94  E-value=4.2e-06  Score=65.60  Aligned_cols=32  Identities=31%  Similarity=0.306  Sum_probs=28.6

Q ss_pred             CCcEEeCC-CCceeccCcccCCcCCCCCCCCCC
Q psy2512          38 ASEFTCFD-GSLTIPFSYVNDDYCDCQDSSDEP   69 (115)
Q Consensus        38 ~g~F~C~~-gs~~I~~s~vNDg~CDC~DGSDEp   69 (115)
                      ++.|+|.+ ...+||.+++|||.-||.|||||.
T Consensus        56 ~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~   88 (217)
T 2gtl_M           56 EHESECRGDVPECIHDLLFCDGEKDCRDGSDED   88 (217)
T ss_dssp             TTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCceecCCCCCcEechhhccCCCCCCCCCCccc
Confidence            57899986 445999999999999999999996

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.73  E-value=2.2e-05  Score=67.58  Aligned_cols=44  Identities=23%  Similarity=0.302  Sum_probs=34.6

Q ss_pred             CcEEeC-CCCceeccCcccCCcCCCCCCCCCCCCCCCCCCceeccc
Q psy2512          39 SEFTCF-DGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHL   83 (115)
Q Consensus        39 g~F~C~-~gs~~I~~s~vNDg~CDC~DGSDEpgt~aC~~~~FyC~n   83 (115)
                      ++|.|. +|. +||..++|||.-||.|||||..+..++..++-|++
T Consensus        68 ~~f~C~~~g~-Ci~~~~~Cdg~~dC~d~sDE~~C~~~~~~~~~C~~  112 (554)
T 3ojy_A           68 QDFQCKETGR-CLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQ  112 (554)
T ss_dssp             SSEECSSSCC-EECGGGTTSSSCCSSSCTTSSSCCSCCCCCTTTTT
T ss_pred             CcCccCCCCE-EcccccccCCcccCCCccccccCCCCCCCcccccc
Confidence            699998 675 99999999999999999999765333223356764

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.62  E-value=4.1e-05  Score=65.46  Aligned_cols=42  Identities=24%  Similarity=0.380  Sum_probs=35.7

Q ss_pred             CcEEeC-CCCceeccCcccCCcCCCCCCCCCCCCCCCCCCceecccC
Q psy2512          39 SEFTCF-DGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHLL   84 (115)
Q Consensus        39 g~F~C~-~gs~~I~~s~vNDg~CDC~DGSDEpgt~aC~~~~FyC~n~   84 (115)
                      .+|.|. +|. +|+..++|||.-||.|||||..   |+...+-|...
T Consensus        69 ~~f~C~~~g~-Ci~~~~~Cdg~~dC~d~sdE~~---c~~~~~~C~~~  111 (537)
T 3ojy_B           69 EGFVCAQTGR-CVNRRLLCNGDNDCGDQSDEAN---CRRIYKKCQHE  111 (537)
T ss_dssp             SSEECTTTCC-EECGGGTTSSSCCSSSSCTTSS---CSSCSSCCSSC
T ss_pred             CccCcCCCCc-EeeccccCCCCCCCCCcccccc---CCCCCCccccC
Confidence            689998 675 9999999999999999999975   56566788764

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=97.05  E-value=2e-05  Score=61.68  Aligned_cols=42  Identities=5%  Similarity=-0.011  Sum_probs=36.2

Q ss_pred             CCcCCCCCCCCCCCCCCCCCCceec--ccCCceeeeeeccceecCCCC
Q psy2512          57 DDYCDCQDSSDEPGTSACPNGTFHS--HLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        57 Dg~CDC~DGSDEpgt~aC~~~~FyC--~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      -++.+|.|+|||.++..|+...|.|  .|+    ++||.+++|||...
T Consensus        38 ~~~~~c~d~sDE~~C~~C~~~~F~C~~~~g----~CIp~~~~CDG~~D   81 (215)
T 2gtl_O           38 RKAGSLRHRVEELEDPSCDEHEHQCGGDDP----QCISKLFVCDGHND   81 (215)
T ss_dssp             HHHHHHHHHHHHHSCCSSCTTEEECCSSSC----CEEEGGGTTSSSCC
T ss_pred             cccccCCcchhhccCCCCCCcceeeCCCCC----cCccccccCCCCCc
Confidence            3456999999999988899999999  555    89999999999854

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=96.99  E-value=0.00021  Score=42.85  Aligned_cols=33  Identities=18%  Similarity=0.206  Sum_probs=26.0

Q ss_pred             CCCCCCCCceeccc-CCceeeeeeccceecCCCC
Q psy2512          70 GTSACPNGTFHSHL-LTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        70 gt~aC~~~~FyC~n-~g~~p~~Ipssrv~DG~~~  102 (115)
                      |+.+|+.++|+|.+ .++..++||.++++||+..
T Consensus         1 g~~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~D   34 (47)
T 1jrf_A            1 GSSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPD   34 (47)
T ss_dssp             CCCCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCC
T ss_pred             CCCCCCCCeeECCCCCCCCCeEcCHhhcCCCCcC
Confidence            46789999999995 1223489999999999853

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=96.55  E-value=0.0012  Score=39.12  Aligned_cols=29  Identities=14%  Similarity=0.204  Sum_probs=25.0

Q ss_pred             CCCCCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          70 GTSACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        70 gt~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      |+..|+..+|.|.|+    ++||..+++||..-
T Consensus         1 G~~~C~~~~F~C~~g----~CI~~~~~CDg~~D   29 (44)
T 1j8e_A            1 GSHSCSSTQFKCNSG----RCIPEHWTCDGDND   29 (44)
T ss_dssp             CCSSSCTTEEECTTS----CEEEGGGTTSSSCC
T ss_pred             CCCCCCCCceEeCCC----CeEecCcccCCCCC
Confidence            456799999999986    79999999999864

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=95.99  E-value=0.0039  Score=36.58  Aligned_cols=27  Identities=15%  Similarity=0.196  Sum_probs=23.3

Q ss_pred             CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .|+.++|.|.+.|   ++||.++++||+..
T Consensus         3 ~C~~~~F~C~~~g---~CI~~~~~CDg~~D   29 (42)
T 1cr8_A            3 GCHTDEFQCRLDG---LCIPLRWRCDGDTD   29 (42)
T ss_dssp             CSSTTCEECTTTC---CEECGGGSSSSSCC
T ss_pred             CCCCCceEeCCCC---eEcChhhcCCCCcC
Confidence            5999999999744   79999999999864

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=95.95  E-value=0.0036  Score=56.16  Aligned_cols=41  Identities=27%  Similarity=0.412  Sum_probs=33.2

Q ss_pred             CcEEeCCCCceeccCcccCCcCCCCCCCCCCCCCCCCCCceeccc
Q psy2512          39 SEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPNGTFHSHL   83 (115)
Q Consensus        39 g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt~aC~~~~FyC~n   83 (115)
                      ..|.|.+|. +|+..++|||.-||.|+|||.+   |+..+--|..
T Consensus       121 ~~F~C~~g~-ci~~~~~c~g~~dC~d~sde~~---C~~~~~~C~~  161 (913)
T 3t5o_A          121 NKFRCDSGR-CIARKLECNGENDCGDNSDERD---CGRTKAVCTR  161 (913)
T ss_dssp             SEEECTTSC-EEEGGGSSSSSCCSSSSGGGTT---CSSCCCSSSS
T ss_pred             cccccCCCc-eEccceecCCcccCCCcccccc---CCCCCCcccc
Confidence            679999874 9999999999999999999965   5544445653

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=95.68  E-value=0.0058  Score=36.61  Aligned_cols=26  Identities=12%  Similarity=0.132  Sum_probs=23.3

Q ss_pred             CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .|+..+|.|.|+    ++||.++++||..-
T Consensus         5 ~C~~~~F~C~~g----~CI~~~~~CDG~~D   30 (45)
T 1d2l_A            5 QCQPGEFACANS----RCIQERWKCDGDND   30 (45)
T ss_dssp             BTTBTCEEETTT----EEECGGGTTTSSCT
T ss_pred             cCCCCceEcCCC----CeEehhhccCCCCC
Confidence            698899999987    79999999999864

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=95.67  E-value=0.0051  Score=36.21  Aligned_cols=28  Identities=18%  Similarity=0.144  Sum_probs=24.0

Q ss_pred             CCCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          72 SACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        72 ~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      ..|+.++|.|.|.|   ++||..+++||+..
T Consensus         5 ~~C~~~~f~C~~~g---~CI~~~~~CDg~~D   32 (43)
T 2jm4_A            5 VKCSLGYFPCGNIT---KCLPQLLHCNGVDD   32 (43)
T ss_dssp             CSCCTTEEECSSSS---CEEEGGGTTSSCCC
T ss_pred             CCCCCCeeECCCCC---eEcCHhhccCCCCC
Confidence            46999999999833   79999999999864

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=95.53  E-value=0.0074  Score=51.10  Aligned_cols=32  Identities=34%  Similarity=0.640  Sum_probs=29.0

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      ++.|+|.++. +|+..++|||.-||.|||||.+
T Consensus       243 ~~~~~C~~~~-C~~~~~~cdG~~dC~~gsDE~~  274 (565)
T 2xrc_A          243 GKGFHCKSGV-CIPSQYQCNGEVDCITGEDEVG  274 (565)
T ss_dssp             SSCEEETTTE-EECGGGTTSSSCCSSSCTTSSS
T ss_pred             CCceecCCCc-ccCccccCCCcccCCCCccccC
Confidence            5689998876 9999999999999999999975

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=95.36  E-value=0.0094  Score=36.41  Aligned_cols=27  Identities=7%  Similarity=0.110  Sum_probs=23.2

Q ss_pred             CCCCCCceecc-cCCceeeeeeccceecCCCC
Q psy2512          72 SACPNGTFHSH-LLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        72 ~aC~~~~FyC~-n~g~~p~~Ipssrv~DG~~~  102 (115)
                      ..|+..+|.|. ++    ++||..+++||..-
T Consensus         5 ~~C~~~~F~C~~~g----~CI~~~~~CDG~~D   32 (50)
T 2knx_A            5 KTCGPSSFSCPGTH----VCVPERWLCDGDKD   32 (50)
T ss_dssp             CTTCTTEEEETTTT----EEEETTTTTSSSCC
T ss_pred             CCCCCCcEEcCCCC----eEcChhhcCCCCCC
Confidence            46999999997 54    89999999999864

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=95.30  E-value=0.0081  Score=34.21  Aligned_cols=25  Identities=16%  Similarity=0.081  Sum_probs=22.2

Q ss_pred             CCCCceecccCCceeeeeeccceecCCCC
Q psy2512          74 CPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        74 C~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      |+..+|.|.++    .+|+.++++||+..
T Consensus         2 C~~~~f~C~~g----~Ci~~~~~CDg~~D   26 (37)
T 1ajj_A            2 CSAFEFHCLSG----ECIHSSWRCDGGPD   26 (37)
T ss_dssp             CCTTCEECTTS----CEECGGGTTSSSCC
T ss_pred             CCCCceEcCCC----CeechhhccCCCCC
Confidence            78889999986    79999999999864

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=95.11  E-value=0.011  Score=35.42  Aligned_cols=27  Identities=11%  Similarity=0.048  Sum_probs=23.4

Q ss_pred             CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .|+..+|.|.|++   ++|+.++++||+..
T Consensus         6 ~C~~~~F~C~~g~---~CI~~~~~CDG~~D   32 (48)
T 2i1p_A            6 NCTSAQFKCADGS---SCINSRYRCDGVYD   32 (48)
T ss_dssp             CCCSSSEECSSSS---CEECGGGSSSSSCC
T ss_pred             CCCCCeeECCCCC---EeCCHhhcCCCCCC
Confidence            6888999999873   79999999999864

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=95.06  E-value=0.0099  Score=35.11  Aligned_cols=27  Identities=11%  Similarity=0.116  Sum_probs=22.6

Q ss_pred             CCCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          72 SACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        72 ~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      ..|+..+|.|.|+    ++||..+++||...
T Consensus         6 ~~C~~~~f~C~~g----~CI~~~~~CDg~~D   32 (44)
T 3a7q_B            6 KECEKDQFQCRNE----RCIPSVWRCDEDDD   32 (44)
T ss_dssp             --CCTTEEECTTS----CEEEGGGTTSSSCC
T ss_pred             CCCCCCceEcCCC----CEeChhhccCCCCC
Confidence            3699999999986    79999999999864

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=94.62  E-value=0.015  Score=36.23  Aligned_cols=26  Identities=4%  Similarity=0.088  Sum_probs=23.3

Q ss_pred             CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .|+.+.|.|.|+    ++||.+++|||...
T Consensus         6 ~C~~~~F~C~nG----~CIp~~~~CDG~~D   31 (52)
T 2m0p_A            6 SCLDTQYTCDNH----QCISKNWVCDTDND   31 (52)
T ss_dssp             SSCSSEEECTTC----CEEETTSTTSSSCS
T ss_pred             CCCCCceECCCC----CEEecCccCCCCCC
Confidence            699999999987    79999999999764

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=94.58  E-value=0.016  Score=38.36  Aligned_cols=28  Identities=7%  Similarity=0.073  Sum_probs=23.8

Q ss_pred             CCCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          72 SACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        72 ~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .+|+.+.|+|.+.|   ++||.++++||..-
T Consensus         7 ~~C~~~~f~C~~~g---~CIp~~~~CDg~~D   34 (80)
T 2kny_A            7 KTCGPSSFSCPGTH---VCVPERWLCDGDKD   34 (80)
T ss_dssp             CCCSSSEEECTTSS---CEEEHHHHTTSSCC
T ss_pred             CCCCCCceecCCCC---eEcChhhcCCCCCC
Confidence            47999999999644   89999999999863

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=94.26  E-value=0.015  Score=33.53  Aligned_cols=27  Identities=4%  Similarity=-0.082  Sum_probs=22.0

Q ss_pred             CCCCceecccCCceeeeeeccceecCCCC
Q psy2512          74 CPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        74 C~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      |+..+|.|.+.  ..++||.++++||+..
T Consensus         1 C~~~~f~C~~~--~g~Cip~~~~CDg~~D   27 (39)
T 3dpr_E            1 CRIHEISCGAH--STQCIPVSWRCDGEND   27 (39)
T ss_dssp             CCTTTCCCSSS--SSCCCCTTSSSSSSCC
T ss_pred             CCCCceecCCC--CCCEeCccccCCCccc
Confidence            67789999982  1289999999999864

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=94.13  E-value=0.022  Score=33.89  Aligned_cols=30  Identities=13%  Similarity=0.131  Sum_probs=22.8

Q ss_pred             CCCCCceecccC-CceeeeeeccceecCCCC
Q psy2512          73 ACPNGTFHSHLL-TRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        73 aC~~~~FyC~n~-g~~p~~Ipssrv~DG~~~  102 (115)
                      .|+..+|.|.+. ....++||.++++||...
T Consensus         6 ~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~D   36 (47)
T 1k7b_A            6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPD   36 (47)
T ss_dssp             CCSTTEECCSSCTTSCCCCEEGGGSSCSSCC
T ss_pred             CCCCCceEcCCCCCCCCcCCCccccCCCcCC
Confidence            599999999941 001289999999999863

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=88.33  E-value=0.2  Score=39.09  Aligned_cols=28  Identities=4%  Similarity=-0.071  Sum_probs=23.3

Q ss_pred             CCCCCCCceeccc-CCceeeeeeccceecCCC
Q psy2512          71 TSACPNGTFHSHL-LTRRFLIQISAKTWNSSS  101 (115)
Q Consensus        71 t~aC~~~~FyC~n-~g~~p~~Ipssrv~DG~~  101 (115)
                      ...|+...|.|.| .|   .+||.+++|||..
T Consensus        51 ~~~C~~~~F~C~~~~g---~CI~~~~~CDG~~   79 (217)
T 2gtl_M           51 EHHCDEHESECRGDVP---ECIHDLLFCDGEK   79 (217)
T ss_dssp             CCCCCTTEEECSSSSC---CEEEGGGTTSSSC
T ss_pred             CCCCCCCceecCCCCC---cEechhhccCCCC
Confidence            3469999999986 33   7999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	115
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-05
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	6e-05
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	7e-05
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	1e-04
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	1e-04
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	2e-04
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	2e-04
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	2e-04
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-04
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	2e-04
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	4e-04
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	5e-04
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	6e-04
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	0.003
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	0.004

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPN 76
           +++F C  G   IP  +  D   DC D SDE   + C N
Sbjct: 6  SSTQFKCNSGR-CIPEHWTCDGDNDCGDYSDETHAN-CTN 43

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 6e-05
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPN 76
             EF C    L IP  +  D   DC DSSDE     C  
Sbjct: 5  HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS---CEG 41

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 7e-05
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEP 69
             EF C +    I   +  D   DC D+SDE 
Sbjct: 7  QPGEFACANSR-CIQERWKCDGDNDCLDNSDEA 38

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 1e-04
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 4/41 (9%)

Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDEPGTSACPN 76
             E +C   S   IP S+  D   DC    DE     C N
Sbjct: 2  RIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN---CGN 39

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACP 75
            +EF C DG   I   +V D   DC D SDE     CP
Sbjct: 4  SQAEFRCHDGK-CISRQFVCDSDRDCLDGSDEAS---CP 38

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 34.5 bits (79), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 11/34 (32%), Gaps = 1/34 (2%)

Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDEP 69
             E  C       I      D   DC+D SDE 
Sbjct: 4  DEHESECRGDVPECIHDLLFCDGEKDCRDGSDED 37

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 36 QPASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEP 69
          +  ++F C  G   I    V +   DC+D SDEP
Sbjct: 7  EGPNKFKCHSGE-CITLDKVCNMARDCRDWSDEP 39

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEP 69
            + F C   +  IP  +  D+  DC+D SDE 
Sbjct: 4  GPASFQCNSST-CIPQLWACDNDPDCEDGSDEW 35

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTS 72
           A EF C  G   I  S+  D   DC+D SDE   +
Sbjct: 3  SAFEFHCLSGE-CIHSSWRCDGGPDCKDKSDEENCA 37

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 34.1 bits (78), Expect = 2e-04
 Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)

Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDE 68
              F C       I    V D + DC ++ DE
Sbjct: 3  EKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE 35

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 4e-04
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACPN 76
             EF C DG+  I  S   D   DC+D SDE G   C N
Sbjct: 4  RPDEFQCSDGN-CIHGSRQCDREYDCKDMSDEVG---CVN 39

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 5e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDE 68
           + +F+C       IP  +  D   DC + SDE
Sbjct: 6  KSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 6e-04
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 37 PASEFTCFDGSLTIPFSYVNDDYCDCQDSSDE 68
            +EF C DG   I + +V D   +CQD SDE
Sbjct: 9  ERNEFQCQDGK-CISYKWVCDGSAECQDGSDE 39

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 31.0 bits (70), Expect = 0.003
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 37 PASEFTCFDGSLT----IPFSYVNDDYCDCQDSSDE 68
          P  +F C +         P  ++ D + DC D  DE
Sbjct: 3  PPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 30.9 bits (70), Expect = 0.004
 Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)

Query: 37 PASEFTCFDGSLT-IPFSYVNDDYCDCQDSSDE 68
             E  C       I   +V D + DC++  DE
Sbjct: 4  DEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	98.73
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	98.72
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	98.71
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	98.71
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	98.7
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	98.68
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	98.65
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	98.64
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	98.64
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	98.64
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	98.63
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	98.62
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	98.58
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	98.56
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	98.44
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	96.63
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	95.77
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	95.74
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	95.71
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	95.68
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	95.15
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	95.1
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	94.73
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	94.69
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	94.64
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	94.53
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	94.41
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	94.03
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	93.4
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	93.0

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.8e-09  Score=61.60  Aligned_cols=32  Identities=44%  Similarity=0.661  Sum_probs=29.4

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .++|+|.++. +|+.+++||++-||.|||||.+
T Consensus         4 ~~~f~C~~g~-Ci~~~~~CDg~~DC~dgsDE~~   35 (37)
T d1ajja_           4 AFEFHCLSGE-CIHSSWRCDGGPDCKDKSDEEN   35 (37)
T ss_dssp             TTCEECTTSC-EECGGGTTSSSCCSTTCGGGTT
T ss_pred             CCceEcCCCC-EECchhcCCCCCcCCCCchhhc
Confidence            5789998875 9999999999999999999975

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.5e-09  Score=63.26  Aligned_cols=33  Identities=30%  Similarity=0.506  Sum_probs=29.9

Q ss_pred             CCcEEeCCC-CceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDG-SLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~g-s~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .++|+|.++ .++||.+++|||+-||+|||||.+
T Consensus         3 ~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d1v9u5_           3 IHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN   36 (39)
T ss_dssp             TTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSS
T ss_pred             CCceECCCCCCCeeechhcCcCcccCCCCchhcc
Confidence            578999986 579999999999999999999975

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=4.5e-09  Score=62.07  Aligned_cols=33  Identities=42%  Similarity=0.683  Sum_probs=30.2

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      +++|+|.++..+|+.+++||+.-||.|||||.+
T Consensus         6 ~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~   38 (42)
T d1cr8a_           6 TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS   38 (42)
T ss_dssp             TTCEECTTTCCEECGGGSSSSSCCSSSSTTTTT
T ss_pred             CCceEcCCCCEEccchhcCCCcCcCCCcchhcc
Confidence            578999876679999999999999999999965

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=4.9e-09  Score=62.78  Aligned_cols=36  Identities=33%  Similarity=0.563  Sum_probs=31.0

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPGTSACP   75 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpgt~aC~   75 (115)
                      .++|.|.++ .+|+.+++||+.-||.|||||... .|.
T Consensus         8 ~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~~-~C~   43 (45)
T d1d2la_           8 PGEFACANS-RCIQERWKCDGDNDCLDNSDEAPA-LCH   43 (45)
T ss_dssp             BTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTT-TCC
T ss_pred             CCCeEcCCC-CeEChhhhCcCcCcCCCCCCCCcC-cCc
Confidence            578999887 599999999999999999999753 453

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.4e-09  Score=62.85  Aligned_cols=32  Identities=38%  Similarity=0.639  Sum_probs=29.7

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      +++|.|.+|. +||.+++||+.-||.|||||+.
T Consensus         9 ~~~f~C~~g~-CI~~~~~CDg~~DC~DgsDE~~   40 (44)
T d1xfea2           9 PNKFKCHSGE-CITLDKVCNMARDCRDWSDEPI   40 (44)
T ss_dssp             TTEEECTTSC-EEESTTTTCSSCCCSSCSSSCT
T ss_pred             CCeEECCCCC-eEchhhcCCCCCCCCCCCccCc
Confidence            6889999986 9999999999999999999973

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6.3e-09  Score=61.19  Aligned_cols=33  Identities=33%  Similarity=0.632  Sum_probs=29.6

Q ss_pred             CCcEEeCCC-CceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDG-SLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~g-s~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      +++|+|.++ ..+||.+++|||.-||.|||||.+
T Consensus         7 ~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~   40 (41)
T d1f5ya2           7 SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQG   40 (41)
T ss_dssp             SSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTT
T ss_pred             CCceECCCCCCCCccchhcCCCcCcCcCcccccC
Confidence            579999874 469999999999999999999975

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=6.6e-09  Score=61.71  Aligned_cols=32  Identities=44%  Similarity=0.847  Sum_probs=29.5

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .++|+|.++. +||.+++||+.-||.|||||..
T Consensus        10 ~~~f~C~~g~-CI~~~~~CDg~~DC~DgsDE~~   41 (44)
T d1f5ya1          10 RNEFQCQDGK-CISYKWVCDGSAECQDGSDESQ   41 (44)
T ss_dssp             SSSEECSSSC-EECTTTTTSSSCSSSSSGGGTT
T ss_pred             CCCeEcCCCC-eEChhHcCCCcCcCCCCCcCCC
Confidence            6789999875 9999999999999999999964

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.64  E-value=7.6e-09  Score=61.19  Aligned_cols=33  Identities=30%  Similarity=0.324  Sum_probs=29.6

Q ss_pred             CCCcEEeCCC-CceeccCcccCCcCCCCCCCCCC
Q psy2512          37 PASEFTCFDG-SLTIPFSYVNDDYCDCQDSSDEP   69 (115)
Q Consensus        37 ~~g~F~C~~g-s~~I~~s~vNDg~CDC~DGSDEp   69 (115)
                      ++++|+|.++ ..+||.+++|||+-||.|||||.
T Consensus         4 ~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~   37 (42)
T d2gtlm2           4 DEHESECRGDVPECIHDLLFCDGEKDCRDGSDED   37 (42)
T ss_dssp             CTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCCeeECCCCCCCEechhhcCCCCccCCCCCcCC
Confidence            4789999874 47999999999999999999994

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=9.4e-09  Score=59.79  Aligned_cols=32  Identities=44%  Similarity=0.758  Sum_probs=29.1

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .+.|+|.+|. +|+.+++||++-||.|||||.+
T Consensus         5 ~~~f~C~~g~-CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb1           5 QAEFRCHDGK-CISRQFVCDSDRDCLDGSDEAS   36 (39)
T ss_dssp             TTEEECTTSC-EEEGGGTTSSSCCSTTCTTTTT
T ss_pred             CCCEEcCCCC-EEcchhcCcCcCcCcCCchhcC
Confidence            5789998874 9999999999999999999964

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=6.5e-09  Score=60.71  Aligned_cols=32  Identities=47%  Similarity=0.668  Sum_probs=29.4

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      ++.|.|.++. +|+.+++||++-||.|||||.+
T Consensus         5 ~~~f~C~~g~-CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d1f8za_           5 PDEFQCSDGN-CIHGSRQCDREYDCKDMSDEVG   36 (39)
T ss_dssp             TTEEECSSSC-EEETTTSSSCCCCSTTSGGGSS
T ss_pred             CCceEeCCCC-eEChhhcCCCCCcCCCCchhcc
Confidence            5789998875 9999999999999999999964

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.63  E-value=9.3e-09  Score=60.51  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=29.2

Q ss_pred             CCCcEEeCC-CCceeccCcccCCcCCCCCCCCCC
Q psy2512          37 PASEFTCFD-GSLTIPFSYVNDDYCDCQDSSDEP   69 (115)
Q Consensus        37 ~~g~F~C~~-gs~~I~~s~vNDg~CDC~DGSDEp   69 (115)
                      ++++|+|.+ ...+||.+++||+.-||.|||||.
T Consensus         3 ~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~   36 (41)
T d2gtln2           3 EKRTFQCGGNEQECISDLLVCDGHKDCHNAHDED   36 (41)
T ss_dssp             CTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSC
T ss_pred             CCCeeECCCcCCCeechHHcCCCCccCCCCCccc
Confidence            368999986 346999999999999999999995

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=6.7e-09  Score=60.56  Aligned_cols=32  Identities=34%  Similarity=0.585  Sum_probs=29.2

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      +++|+|.+|. +||.+++||+.-||.|||||..
T Consensus         5 ~~~f~C~~g~-CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb2           5 PASFQCNSST-CIPQLWACDNDPDCEDGSDEWP   36 (39)
T ss_dssp             TTEEECTTSC-EEEGGGTTSSSCCSTTCGGGCG
T ss_pred             CCceEcCCCC-eEChhhcCCCCCCCCCCCcCCC
Confidence            5789998876 9999999999999999999963

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=8.8e-09  Score=61.17  Aligned_cols=32  Identities=38%  Similarity=0.661  Sum_probs=29.4

Q ss_pred             CCcEEeCCCCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDGSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .+.|+|.++. +||.+++||++-||.|||||..
T Consensus         7 ~~~f~C~~g~-CI~~~~~CDg~~DC~DgsDE~~   38 (44)
T d1j8ea_           7 STQFKCNSGR-CIPEHWTCDGDNDCGDYSDETH   38 (44)
T ss_dssp             TTEEECTTSC-EEEGGGTTSSSCCSSSSGGGSH
T ss_pred             CCcEEcCCCC-EEChhhcCcCcccCCCCCcCCC
Confidence            5789998875 9999999999999999999975

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=98.56  E-value=9.5e-09  Score=60.48  Aligned_cols=33  Identities=30%  Similarity=0.570  Sum_probs=28.9

Q ss_pred             CCcEEeCCC----CceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFDG----SLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~g----s~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .++|+|.+.    ..+||.+++||+.-||.|||||.+
T Consensus         4 ~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~   40 (42)
T d1k7ba_           4 PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   40 (42)
T ss_dssp             TTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred             cCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhc
Confidence            578999863    369999999999999999999964

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.44  E-value=1.7e-08  Score=59.23  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=29.1

Q ss_pred             CCcEEeCC-CCceeccCcccCCcCCCCCCCCCCC
Q psy2512          38 ASEFTCFD-GSLTIPFSYVNDDYCDCQDSSDEPG   70 (115)
Q Consensus        38 ~g~F~C~~-gs~~I~~s~vNDg~CDC~DGSDEpg   70 (115)
                      .++|+|.. ..++||.+++|||.-||.|||||.+
T Consensus         5 ~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~   38 (41)
T d2gtlo2           5 EHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKD   38 (41)
T ss_dssp             TTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHC
T ss_pred             cCeeECCCCCCcEeechhccCCCCcCCCCchhcc
Confidence            57899975 3469999999999999999999965

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00053  Score=39.80  Aligned_cols=29  Identities=14%  Similarity=0.204  Sum_probs=25.3

Q ss_pred             CCCCCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          70 GTSACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        70 gt~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      |+.+|+.+.|.|.++    .+||.++++||+..
T Consensus         1 G~~~C~~~~f~C~~g----~CI~~~~~CDg~~D   29 (44)
T d1j8ea_           1 GSHSCSSTQFKCNSG----RCIPEHWTCDGDND   29 (44)
T ss_dssp             CCSSSCTTEEECTTS----CEEEGGGTTSSSCC
T ss_pred             CCccCCCCcEEcCCC----CEEChhhcCcCccc
Confidence            456899999999987    79999999999864

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0021  Score=36.54  Aligned_cols=27  Identities=7%  Similarity=0.092  Sum_probs=23.7

Q ss_pred             CCCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          72 SACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        72 ~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      +.|+.++|.|.++    ++|+.++++||...
T Consensus         1 ssC~~~~f~C~~g----~CI~~~~~CDg~~D   27 (39)
T d1f8za_           1 ATCRPDEFQCSDG----NCIHGSRQCDREYD   27 (39)
T ss_dssp             CCCCTTEEECSSS----CEEETTTSSSCCCC
T ss_pred             CCCCCCceEeCCC----CeEChhhcCCCCCc
Confidence            3699999999987    79999999999864

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0032  Score=36.34  Aligned_cols=27  Identities=11%  Similarity=0.083  Sum_probs=23.8

Q ss_pred             CCCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          72 SACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        72 ~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      ..|+.++|.|.++    ++||.++|+||+..
T Consensus         6 ~~C~~~~f~C~~g----~CI~~~~~CDg~~D   32 (44)
T d1f5ya1           6 DRCERNEFQCQDG----KCISYKWVCDGSAE   32 (44)
T ss_dssp             CCCCSSSEECSSS----CEECTTTTTSSSCS
T ss_pred             CccCCCCeEcCCC----CeEChhHcCCCcCc
Confidence            3699999999986    79999999999864

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0033  Score=36.04  Aligned_cols=27  Identities=15%  Similarity=0.196  Sum_probs=23.2

Q ss_pred             CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .|+.++|.|.+.+   ++|+.++++||+..
T Consensus         3 ~C~~~~f~C~~~~---~CI~~~~~CDg~~D   29 (42)
T d1cr8a_           3 GCHTDEFQCRLDG---LCIPLRWRCDGDTD   29 (42)
T ss_dssp             CSSTTCEECTTTC---CEECGGGSSSSSCC
T ss_pred             CCCCCceEcCCCC---EEccchhcCCCcCc
Confidence            4999999998654   89999999999864

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0025  Score=37.15  Aligned_cols=26  Identities=12%  Similarity=0.132  Sum_probs=23.6

Q ss_pred             CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .|+.++|.|.|+    .+|+.++|+||+..
T Consensus         5 ~C~~~~f~C~~g----~CI~~~~~CDg~~D   30 (45)
T d1d2la_           5 QCQPGEFACANS----RCIQERWKCDGDND   30 (45)
T ss_dssp             BTTBTCEEETTT----EEECGGGTTTSSCT
T ss_pred             cCCCCCeEcCCC----CeEChhhhCcCcCc
Confidence            699999999987    79999999999875

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0039  Score=34.92  Aligned_cols=25  Identities=16%  Similarity=0.081  Sum_probs=22.3

Q ss_pred             CCCCceecccCCceeeeeeccceecCCCC
Q psy2512          74 CPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        74 C~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      |+.++|.|.++    .+|+.++++||+..
T Consensus         2 C~~~~f~C~~g----~Ci~~~~~CDg~~D   26 (37)
T d1ajja_           2 CSAFEFHCLSG----ECIHSSWRCDGGPD   26 (37)
T ss_dssp             CCTTCEECTTS----CEECGGGTTSSSCC
T ss_pred             CCCCceEcCCC----CEECchhcCCCCCc
Confidence            88899999987    69999999999864

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0043  Score=35.14  Aligned_cols=26  Identities=8%  Similarity=0.130  Sum_probs=22.8

Q ss_pred             CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .|+.++|.|.++    .+||..+++||..-
T Consensus         2 tC~~~~f~C~~g----~CI~~~~~CDg~~D   27 (39)
T d2fcwb2           2 TCGPASFQCNSS----TCIPQLWACDNDPD   27 (39)
T ss_dssp             HCCTTEEECTTS----CEEEGGGTTSSSCC
T ss_pred             ccCCCceEcCCC----CeEChhhcCCCCCC
Confidence            488899999987    79999999999753

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.0065  Score=34.23  Aligned_cols=26  Identities=15%  Similarity=0.167  Sum_probs=22.9

Q ss_pred             CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .|+...|.|.++    .+|+.++++||+..
T Consensus         2 tC~~~~f~C~~g----~CI~~~~~CDg~~D   27 (39)
T d2fcwb1           2 TCSQAEFRCHDG----KCISRQFVCDSDRD   27 (39)
T ss_dssp             CCCTTEEECTTS----CEEEGGGTTSSSCC
T ss_pred             cCCCCCEEcCCC----CEEcchhcCcCcCc
Confidence            488899999987    79999999999864

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=94.69  E-value=0.0074  Score=34.33  Aligned_cols=28  Identities=4%  Similarity=-0.104  Sum_probs=22.7

Q ss_pred             CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .|+.++|.|...  ..++||.++++||+..
T Consensus         2 ~C~~~~f~C~~~--~~~CI~~~~~CDg~~D   29 (41)
T d2gtlo2           2 SCDEHEHQCGGD--DPQCISKLFVCDGHND   29 (41)
T ss_dssp             SSCTTEEECCSS--SCCEEEGGGTTSSSCC
T ss_pred             CCCcCeeECCCC--CCcEeechhccCCCCc
Confidence            589999999742  2379999999999864

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.0084  Score=34.14  Aligned_cols=29  Identities=10%  Similarity=0.001  Sum_probs=23.6

Q ss_pred             CCCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          72 SACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        72 ~aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      ..|+.++|.|.++  ..++||.++++||+..
T Consensus         3 ~~C~~~~f~C~~~--~~~CI~~~~~CDg~~D   31 (41)
T d1f5ya2           3 VTCKSGDFSCGGR--VNRCIPQFWRCDGQVD   31 (41)
T ss_dssp             TTCCSSCEECCSS--CCCEECGGGTTCSCCC
T ss_pred             cccCCCceECCCC--CCCCccchhcCCCcCc
Confidence            3699999999753  2379999999999864

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.0056  Score=34.51  Aligned_cols=27  Identities=4%  Similarity=-0.082  Sum_probs=22.3

Q ss_pred             CCCCceecccCCceeeeeeccceecCCCC
Q psy2512          74 CPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        74 C~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      |+.++|.|.++  ..++||.++++||+..
T Consensus         1 C~~~~f~C~~g--~~~CI~~~~~CDg~~D   27 (39)
T d1v9u5_           1 CRIHEISCGAH--STQCIPVSWRCDGEND   27 (39)
T ss_dssp             CCTTSCCCSSS--SSCCCCGGGSSSSSCC
T ss_pred             CCCCceECCCC--CCCeeechhcCcCccc
Confidence            67889999875  2479999999999864

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=94.41  E-value=0.0081  Score=34.42  Aligned_cols=28  Identities=4%  Similarity=-0.196  Sum_probs=23.1

Q ss_pred             CCCCCceecccCCceeeeeeccceecCCCC
Q psy2512          73 ACPNGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        73 aC~~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      .|+.++|.|.+.  ...+||.++++||+..
T Consensus         2 ~C~~~~f~C~~~--~~~CI~~~~~CDg~~D   29 (42)
T d2gtlm2           2 HCDEHESECRGD--VPECIHDLLFCDGEKD   29 (42)
T ss_dssp             CCCTTEEECSSS--SCCEEEGGGTTSSSCC
T ss_pred             CCCCCeeECCCC--CCCEechhhcCCCCcc
Confidence            488999999864  2379999999999864

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=94.03  E-value=0.013  Score=33.30  Aligned_cols=30  Identities=13%  Similarity=0.144  Sum_probs=23.7

Q ss_pred             CCCCCceecccCC-ceeeeeeccceecCCCC
Q psy2512          73 ACPNGTFHSHLLT-RRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        73 aC~~~~FyC~n~g-~~p~~Ipssrv~DG~~~  102 (115)
                      +|+..+|.|.+.. ...++||.++|+||+..
T Consensus         1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~D   31 (42)
T d1k7ba_           1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPD   31 (42)
T ss_dssp             CCSTTEECCSSCTTSCCCCEEGGGSSCSSCC
T ss_pred             CCCcCcEEcCCCCCCCCcEechhhcCCCcCc
Confidence            4888999998742 22479999999999864

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=93.40  E-value=0.015  Score=33.07  Aligned_cols=26  Identities=12%  Similarity=0.024  Sum_probs=21.8

Q ss_pred             CCCCceecccCCceeeeeeccceecCCC
Q psy2512          74 CPNGTFHSHLLTRRFLIQISAKTWNSSS  101 (115)
Q Consensus        74 C~~~~FyC~n~g~~p~~Ipssrv~DG~~  101 (115)
                      |+.++|.|.+.  ...+||.++++||+.
T Consensus         2 C~~~~f~C~~~--~g~Ci~~~~~CDg~~   27 (41)
T d2gtln2           2 CEKRTFQCGGN--EQECISDLLVCDGHK   27 (41)
T ss_dssp             SCTTEEECCSS--SCCEEETTTTTSSSC
T ss_pred             CCCCeeECCCc--CCCeechHHcCCCCc
Confidence            88899999853  237999999999985

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.026  Score=32.53  Aligned_cols=27  Identities=19%  Similarity=0.196  Sum_probs=22.4

Q ss_pred             CCCC-CCceecccCCceeeeeeccceecCCCC
Q psy2512          72 SACP-NGTFHSHLLTRRFLIQISAKTWNSSSQ  102 (115)
Q Consensus        72 ~aC~-~~~FyC~n~g~~p~~Ipssrv~DG~~~  102 (115)
                      ..|+ .++|.|.++    ++||..+++||+..
T Consensus         4 ~~C~~~~~f~C~~g----~CI~~~~~CDg~~D   31 (44)
T d1xfea2           4 TLCEGPNKFKCHSG----ECITLDKVCNMARD   31 (44)
T ss_dssp             SSCCSTTEEECTTS----CEEESTTTTCSSCC
T ss_pred             CcCCCCCeEECCCC----CeEchhhcCCCCCC
Confidence            3575 489999987    79999999999864