Psyllid ID: psy2520
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | 2.2.26 [Sep-21-2011] | |||||||
| P45843 | 666 | Protein scarlet OS=Drosop | yes | N/A | 0.948 | 0.412 | 0.507 | 5e-75 | |
| P10090 | 687 | Protein white OS=Drosophi | no | N/A | 0.910 | 0.384 | 0.470 | 3e-66 | |
| Q05360 | 677 | Protein white OS=Lucilia | N/A | N/A | 0.924 | 0.395 | 0.463 | 4e-63 | |
| Q27256 | 695 | Protein white OS=Anophele | no | N/A | 0.917 | 0.382 | 0.474 | 2e-62 | |
| Q17320 | 679 | Protein white OS=Ceratiti | N/A | N/A | 0.937 | 0.400 | 0.453 | 2e-61 | |
| Q16928 | 709 | Protein white OS=Anophele | N/A | N/A | 0.913 | 0.373 | 0.450 | 3e-57 | |
| Q11180 | 598 | ABC transporter ATP-bindi | no | N/A | 0.917 | 0.444 | 0.402 | 1e-50 | |
| Q09466 | 610 | ABC transporter ATP-bindi | no | N/A | 0.858 | 0.408 | 0.361 | 4e-43 | |
| Q84TH5 | 662 | ABC transporter G family | yes | N/A | 0.851 | 0.373 | 0.392 | 4e-43 | |
| Q55DW4 | 793 | ABC transporter G family | yes | N/A | 0.8 | 0.292 | 0.388 | 2e-42 |
| >sp|P45843|SCRT_DROME Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 281 bits (718), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 141/278 (50%), Positives = 189/278 (67%), Gaps = 3/278 (1%)
Query: 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMY 66
TGA GTL+A+MG+SG+GK+TL++ L+ R P ++ GDI +NG+ + G++Y
Sbjct: 95 TGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIGPFMHRISGYVY 154
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q DLF SLTV EHL FMA L+LDRRV +R +I LL GL+++ TRIGS
Sbjct: 155 QDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGD--D 212
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
K VLSGGERKRL+FA ELL +P +L CDEPTTGLDS+SA +L+ + EL +Q+ T+LCT
Sbjct: 213 KKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYEL-AQKGTTILCT 271
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVT 246
IHQPSS+L D F+ ++LLAD R AF GS AL+F + GY CP YNPADFLI LA
Sbjct: 272 IHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLATD 331
Query: 247 TNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVG 284
E +S+R + +CD+F+V AK+ D+ +N + H+
Sbjct: 332 PGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEIHMA 369
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Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules. Drosophila melanogaster (taxid: 7227) |
| >sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster GN=w PE=2 SV=2 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/270 (47%), Positives = 184/270 (68%), Gaps = 6/270 (2%)
Query: 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIID--GDIRVNGKPVEGK-FRSACGF 64
G A G L+A+MG+SGAGK+TLL AL+ R P + G +NG+PV+ K ++ C +
Sbjct: 118 GVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCAY 177
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+ Q DLF SLT EHL F A++++ R + QR+A ++ ++ EL L QHT IG
Sbjct: 178 VQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGR 237
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+ LSGGERKRL+FA+E LTDP LL+CDEPT+GLDSF+A +++++++L SQ+ KTV+
Sbjct: 238 VKG--LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKL-SQKGKTVI 294
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLA 244
TIHQPSSEL ++FDKI+L+A+ R AF+G+ A+ F G CP YNPADF ++ LA
Sbjct: 295 LTIHQPSSELFELFDKILLMAEGRVAFLGTPSEAVDFFSYVGAQCPTNYNPADFYVQVLA 354
Query: 245 VTTNDELSSRRRLKRICDEFSVCDFAKEVD 274
V E+ SR R+ +ICD F++ A++++
Sbjct: 355 VVPGREIESRDRIAKICDNFAISKVARDME 384
|
Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. White dimerize with brown for the transport of guanine. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules. Drosophila melanogaster (taxid: 7227) |
| >sp|Q05360|WHITE_LUCCU Protein white OS=Lucilia cuprina GN=W PE=2 SV=2 | Back alignment and function description |
|---|
Score = 241 bits (615), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 128/276 (46%), Positives = 185/276 (67%), Gaps = 8/276 (2%)
Query: 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIID-GDIRV-NGKPVEGK-FRSACGF 64
G A G L+A+MG+SGAGK+TLL AL+ R I +R+ NG PV+ K ++ C +
Sbjct: 107 GVAYPGELLAVMGSSGAGKTTLLNALAFRSARGVQISPSSVRMLNGHPVDAKEMQARCAY 166
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+ Q DLF SLT EHL F A +++ R + Q++ ++ ++ +L L+ Q+T IG
Sbjct: 167 VQQDDLFIGSLTAREHLIFQATVRMPRTMTQKQKLQRVDQVIQDLSLIKCQNTIIGVPGR 226
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+ LSGGERKRL+FA+E LTDP LL+CDEPT+GLDSF A+ +++++++L SQR KTV+
Sbjct: 227 VKG--LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAASVVQVLKKL-SQRGKTVI 283
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLA 244
TIHQPSSEL ++FDKI+L+A+ R AF+G+ A+ F G CP YNPADF ++ LA
Sbjct: 284 LTIHQPSSELFELFDKILLMAEGRVAFLGTPVEAVDFFSFIGAQCPTNYNPADFYVQVLA 343
Query: 245 VTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQ 280
V E+ SR R+ +ICD F+V ++E +E N+Q
Sbjct: 344 VVPGREIESRDRISKICDNFAVGKVSRE--MEQNFQ 377
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May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Lucilia cuprina (taxid: 7375) |
| >sp|Q27256|WHITE_ANOGA Protein white OS=Anopheles gambiae GN=w PE=2 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/272 (47%), Positives = 178/272 (65%), Gaps = 6/272 (2%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD-IR-VNGKPVEG-KFRSA 61
+TG A SG L+A+MG+SGAGK+TLL AL+ R P I + +R +NG PV + R+
Sbjct: 118 NVTGVAKSGELLAVMGSSGAGKTTLLNALAFRSPPGVKISPNAVRALNGVPVNAEQLRAR 177
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
C ++ Q DLF PSLT EHL F A+L++ R V A + + +L EL L+ T IG+
Sbjct: 178 CAYVQQDDLFIPSLTTREHLLFQAMLRMGRDVPASVKQHRVQEVLQELSLVKCADTIIGA 237
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
+ LSGGERKRL+FA+E LTDP LLLCDEPT+GLDSF A ++++++ + + + K
Sbjct: 238 PGRIKG--LSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGM-AMKGK 294
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIK 241
T++ TIHQPSSEL +FDKI+L+A+ R AF+GS + F G PCP YNPADF ++
Sbjct: 295 TIILTIHQPSSELYCLFDKILLVAEGRVAFLGSPYQSAEFFSQLGIPCPPNYNPADFYVQ 354
Query: 242 SLAVTTNDELSSRRRLKRICDEFSVCDFAKEV 273
LA+ E R +K+ICD F+V A+EV
Sbjct: 355 MLAIAPAKEAECRDMIKKICDSFAVSPIAREV 386
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May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Anopheles gambiae (taxid: 7165) |
| >sp|Q17320|WHITE_CERCA Protein white OS=Ceratitis capitata GN=W PE=2 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/280 (45%), Positives = 184/280 (65%), Gaps = 8/280 (2%)
Query: 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIID-GDIRV-NGKPVEGK-FRSACG 63
+G A G L+A+MG+SGAGK+TLL A + R I IR+ NG PV+ K ++ C
Sbjct: 108 SGVAYPGELLAVMGSSGAGKTTLLNASAFRSSKGVQISPSTIRMLNGHPVDAKEMQARCA 167
Query: 64 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
++ Q DLF SLT EHL F A++++ R + Q++ ++ ++ +L L Q+T IG
Sbjct: 168 YVQQDDLFIGSLTAREHLIFQAMVRMPRHMTQKQKVQRVDQVIQDLSLGKCQNTLIGVPG 227
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ LSGGERKRL+FA+E LTDP LL+CDEPT+GLDSF A +++++++L SQ+ KTV
Sbjct: 228 RVKG--LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKL-SQKGKTV 284
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSL 243
+ TIHQPSSEL ++FDKI+L+A+ R AF+G+ A+ F G CP Y PADF ++ L
Sbjct: 285 ILTIHQPSSELFELFDKILLMAEGRVAFLGTPGEAVDFFSYIGATCPTNYTPADFYVQVL 344
Query: 244 AVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHV 283
AV E+ SR R+ +ICD F+V ++E +E N+Q V
Sbjct: 345 AVVPGREVESRDRVAKICDNFAVGKVSRE--MEQNFQKLV 382
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May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Ceratitis capitata (taxid: 7213) |
| >sp|Q16928|WHITE_ANOAL Protein white OS=Anopheles albimanus GN=W PE=3 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/273 (45%), Positives = 176/273 (64%), Gaps = 8/273 (2%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD-IR-VNGKPVEG-KFRSA 61
+TG A SG L+A+MG+SGAGK+TLL L+ R P I + IR +NG PV + R+
Sbjct: 121 NVTGVARSGELLAVMGSSGAGKTTLLNELAFRSPPGVKISPNAIRTLNGVPVTAEQMRAR 180
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ-RIALINSLLIELGLMNSQHTRIG 120
C ++ Q DLF PSLT EHL F A+L++ R V A ++ ++ +L EL L+ T IG
Sbjct: 181 CAYVQQDDLFIPSLTTKEHLMFQAMLRMGRDVPATPIKMHRVDEVLQELSLVKCADTIIG 240
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
+ + LSGGERKR +F +E LTDP LLLCDEPT+ LDSF A ++++++ + + +
Sbjct: 241 VAGRVKG--LSGGERKRTAFRSETLTDPHLLLCDEPTSSLDSFMAQSVLQVLKGM-AMKG 297
Query: 181 KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLI 240
KT++ TIHQPSSEL +FD+I+L+A+ AF+GS + F G PCP YNPADF +
Sbjct: 298 KTIILTIHQPSSELYCLFDRILLVAEG-VAFLGSPYQSADFFSQLGIPCPPNYNPADFYV 356
Query: 241 KSLAVTTNDELSSRRRLKRICDEFSVCDFAKEV 273
+ LA+ N E R +K+ICD F+V A+++
Sbjct: 357 QMLAIAPNKETECRETIKKICDSFAVSPIARDI 389
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May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Anopheles albimanus (taxid: 7167) |
| >sp|Q11180|WHT1_CAEEL ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 165/271 (60%), Gaps = 5/271 (1%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-EGKFRSACG 63
++G A SG L+AI+G+SGAGK+TL+ L+ R + + G I ++G+ + K R
Sbjct: 12 NVSGMAESGKLLAILGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGRRANKWKIREMSA 71
Query: 64 FMYQHDLFSPSLTVYEHLYFMALLKL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
F+ QHD+F ++T EHL FMA L++ D+ ++R + +L ++GL T IG
Sbjct: 72 FVQQHDMFVGTMTAREHLQFMARLRMGDQYYSDHERQLRVEQVLTQMGLKKCADTVIGIP 131
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
+ Q LS GE+KRLSFA+E+LT P +L CDEPT+GLD+F A +++ +R L + T
Sbjct: 132 N--QLKGLSCGEKKRLSFASEILTCPKILFCDEPTSGLDAFMAGHVVQALRSL-ADNGMT 188
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKS 242
V+ TIHQPSS + +F+ + L+A R ++G D A+ E GYPCP YNPAD LI++
Sbjct: 189 VIITIHQPSSHVYSLFNNVCLMACGRVIYLGPGDQAVPLFEKCGYPCPAYYNPADHLIRT 248
Query: 243 LAVTTNDELSSRRRLKRICDEFSVCDFAKEV 273
LAV +D +S + + +I F D + V
Sbjct: 249 LAVIDSDRATSMKTISKIRQGFLSTDLGQSV 279
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q09466|WHT3_CAEEL ABC transporter ATP-binding protein/permease wht-3 OS=Caenorhabditis elegans GN=wht-3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 155/257 (60%), Gaps = 8/257 (3%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM 65
++G A G +VA+MGASGAGK+TL+ L R +G ++VNG + + GF
Sbjct: 60 VSGIAKPGEMVALMGASGAGKTTLMNVLMCRNMKGLEKNGTVKVNGTKIGKEISLISGFA 119
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q ++F P+LTV E+L A L++ + + R ++ ++ L L N + +IG+ +
Sbjct: 120 QQQEIFIPTLTVDEYLMIQARLRM--KANKHTRRERVDEIIEMLRLQNCRDLKIGTPGLV 177
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
+ + SGGE +RL+FA ELL++P+LL DEPT+GLDSF A+ ++++++ L + +
Sbjct: 178 KGI--SGGEARRLTFACELLSNPSLLFADEPTSGLDSFMAASVVQILKNLANSGR----T 231
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAV 245
IHQP++EL FDKII L+ +TAF+G+ ++ F G+P P +NP +++ L+V
Sbjct: 232 LIHQPTAELFFQFDKIIFLSMGKTAFMGTPHESVKFFADCGHPIPKLFNPPEWIQSKLSV 291
Query: 246 TTNDELSSRRRLKRICD 262
N+E SR + +I +
Sbjct: 292 IPNNETKSRETIGKIIE 308
|
Required for efficient RNA interference (RNAi) of pop-1 indicating a role in the germline development. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q84TH5|AB25G_ARATH ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 154/252 (61%), Gaps = 5/252 (1%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM 65
+TG G +A++G SG+GKSTLL A++ RL + G I +N + + GF+
Sbjct: 87 VTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNL-TGKILINDGKITKQTLKRTGFV 145
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q DL P LTV E L F+ALL+L R + ++ S++ ELGL ++T +G++ I
Sbjct: 146 AQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVVGNTFIR 205
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
+SGGERKR+S A ELL +P+LL+ DEPT+GLD+ +A +L++ + L + KTV+
Sbjct: 206 G---ISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGKGKTVVT 262
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIK-SLA 244
+IHQPSS + MFD ++LL++ + F+G A+A+ ES G+ + NPADFL+ +
Sbjct: 263 SIHQPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFPMNPADFLLDLANG 322
Query: 245 VTTNDELSSRRR 256
V D ++ R +
Sbjct: 323 VCQTDGVTEREK 334
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q55DW4|ABCG1_DICDI ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 145/237 (61%), Gaps = 5/237 (2%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-FRSACG 63
+ G SGT+ AIMG SGAGK+TLL L+ RL + G + +NG + F+ CG
Sbjct: 141 NINGHIESGTIFAIMGPSGAGKTTLLDILAHRLNING--SGTMYLNGNKSDFNIFKKLCG 198
Query: 64 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
++ Q D PSLTV E L F A LK+ R V +++ + ++ E+GL T +G++
Sbjct: 199 YVTQSDSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTAD 258
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ + SGGER+R++ + ELLT P+++L DEPT+GLD+ ++ ++ +++L ++ +T+
Sbjct: 259 NKIRGI-SGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKL-AKSGRTI 316
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLI 240
+CTIHQP S + DMFD ++LL D T + G + AL + + GY C NPADF +
Sbjct: 317 ICTIHQPRSNIYDMFDNLLLLGDGNTIYYGKANKALEYFNANGYHCSEKTNPADFFL 373
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | ||||||
| 270013402 | 607 | hypothetical protein TcasGA2_TC011998 [T | 0.951 | 0.454 | 0.523 | 1e-79 | |
| 91090372 | 640 | PREDICTED: similar to scarlet [Tribolium | 0.951 | 0.431 | 0.523 | 1e-79 | |
| 321473456 | 663 | ABC protein, subfamily ABCG [Daphnia pul | 0.944 | 0.413 | 0.527 | 2e-77 | |
| 379698902 | 670 | scarlet [Bombyx mori] gi|326784694|dbj|B | 0.951 | 0.411 | 0.534 | 2e-77 | |
| 428623692 | 670 | ABC transporter related-protein [Bombyx | 0.951 | 0.411 | 0.534 | 2e-77 | |
| 428623698 | 673 | mutant ABC transporter related-protein [ | 0.951 | 0.410 | 0.534 | 2e-77 | |
| 195428545 | 663 | GK16717 [Drosophila willistoni] gi|19415 | 0.948 | 0.414 | 0.517 | 4e-76 | |
| 194750697 | 668 | GF23914 [Drosophila ananassae] gi|190624 | 0.948 | 0.411 | 0.517 | 2e-75 | |
| 195495106 | 667 | GE19858 [Drosophila yakuba] gi|194181227 | 0.948 | 0.412 | 0.510 | 1e-74 | |
| 195168149 | 668 | GL17865 [Drosophila persimilis] gi|19846 | 0.948 | 0.411 | 0.514 | 2e-74 |
| >gi|270013402|gb|EFA09850.1| hypothetical protein TcasGA2_TC011998 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/279 (52%), Positives = 199/279 (71%), Gaps = 3/279 (1%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM 65
+TGA +G+LVA+MGASGAGKSTL++ L+ R+ ++GD+ +NG+P+ + GFM
Sbjct: 80 VTGAVKAGSLVALMGASGAGKSTLMSTLAHRITGGAFVEGDVLINGRPIGNYMKYISGFM 139
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+Q D+F SLTV EH+ MA LKLDR+ +R + I+ +L LGL +TRIG +
Sbjct: 140 HQEDIFIGSLTVSEHMNIMARLKLDRKTTQQERNSKIHEILKSLGLTKCLNTRIGING-- 197
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
+ VLSGGE+KRL+FATELLTDP +L CDEPTTGLDS+SA K++ MM + S KT+LC
Sbjct: 198 ESKVLSGGEKKRLAFATELLTDPPILFCDEPTTGLDSYSAQKIVTMMNTMASS-GKTILC 256
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAV 245
TIHQPSS++ MF ++IL+AD R AFIGS +AL F + GY CP YNPADF IK+LA
Sbjct: 257 TIHQPSSDIFAMFSQLILMADGRIAFIGSAASALDFFQKAGYRCPTSYNPADFFIKTLAT 316
Query: 246 TTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVG 284
T E +S++ +KRICD F+V D+ KEV++ + Y+ H+G
Sbjct: 317 TPGFEENSKQCIKRICDYFAVSDYNKEVNVVVQYEFHMG 355
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91090372|ref|XP_968696.1| PREDICTED: similar to scarlet [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/279 (52%), Positives = 199/279 (71%), Gaps = 3/279 (1%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM 65
+TGA +G+LVA+MGASGAGKSTL++ L+ R+ ++GD+ +NG+P+ + GFM
Sbjct: 68 VTGAVKAGSLVALMGASGAGKSTLMSTLAHRITGGAFVEGDVLINGRPIGNYMKYISGFM 127
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+Q D+F SLTV EH+ MA LKLDR+ +R + I+ +L LGL +TRIG +
Sbjct: 128 HQEDIFIGSLTVSEHMNIMARLKLDRKTTQQERNSKIHEILKSLGLTKCLNTRIGING-- 185
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
+ VLSGGE+KRL+FATELLTDP +L CDEPTTGLDS+SA K++ MM + S KT+LC
Sbjct: 186 ESKVLSGGEKKRLAFATELLTDPPILFCDEPTTGLDSYSAQKIVTMMNTMASS-GKTILC 244
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAV 245
TIHQPSS++ MF ++IL+AD R AFIGS +AL F + GY CP YNPADF IK+LA
Sbjct: 245 TIHQPSSDIFAMFSQLILMADGRIAFIGSAASALDFFQKAGYRCPTSYNPADFFIKTLAT 304
Query: 246 TTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVG 284
T E +S++ +KRICD F+V D+ KEV++ + Y+ H+G
Sbjct: 305 TPGFEENSKQCIKRICDYFAVSDYNKEVNVVVQYEFHMG 343
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321473456|gb|EFX84423.1| ABC protein, subfamily ABCG [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/277 (52%), Positives = 195/277 (70%), Gaps = 3/277 (1%)
Query: 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQ 67
GA G+LVA+MGASGAGKSTLL AL+ R P ++DG+IR+NG+ ++ F G++YQ
Sbjct: 92 GALQPGSLVALMGASGAGKSTLLNALACRCPPGVVVDGEIRINGRLIDRSFCDMSGYVYQ 151
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
D+F SLT EHL F A LK++ Y++ + LL ELGL+ Q+ IG +T+
Sbjct: 152 DDIFVGSLTAREHLLFTARLKMNGNWTPYEQNLRVKELLTELGLIKCQNVVIGEPGVTKG 211
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGGERKRL+FA+++LTDPA+L CDEPTTGLD+FSA +L+ M+++LT QR KTV+CTI
Sbjct: 212 --LSGGERKRLAFASQVLTDPAVLFCDEPTTGLDTFSAERLVMMLKDLT-QRGKTVVCTI 268
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 247
HQPSSE MFD+++LLA+ R A+ GS AL F ES GY CP YNPADF +++LAV
Sbjct: 269 HQPSSETFAMFDRLVLLAEGRIAYQGSSSGALGFFESMGYTCPATYNPADFYVQTLAVIP 328
Query: 248 NDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVG 284
E +SR ++ ICD F V AK++DL I Y+T +G
Sbjct: 329 GLEDTSRSTVRAICDRFIVTSTAKQIDLLIQYETSLG 365
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|379698902|ref|NP_001243922.1| scarlet [Bombyx mori] gi|326784694|dbj|BAK08373.1| scarlet [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 149/279 (53%), Positives = 194/279 (69%), Gaps = 3/279 (1%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGF 64
++G A GTL+A+MG SGAGK+TL++AL+ R P +IDG+I +NG+PV G+
Sbjct: 95 NVSGIAKPGTLIALMGPSGAGKTTLMSALAHRSPFGTVIDGEIIMNGRPVCSYVDRESGY 154
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
M+Q D+F+ +LTV EHL MA L++DRR R +N L+ +L L S+ TRIG +
Sbjct: 155 MHQDDIFAENLTVIEHLTVMARLRMDRRTSTVARKRRVNQLMRQLSLYESRFTRIGG--L 212
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGGERKRL+FATELLTDP LL CDEPTTGLDS SA KL+ ++R +Q KTV+
Sbjct: 213 DGHKTLSGGERKRLAFATELLTDPGLLFCDEPTTGLDSSSALKLVSLLRASAAQ-GKTVI 271
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLA 244
CTIHQPSSEL+ FDK++LLA+ R AF G+ AAL F ES GY CP YNP D+ IK LA
Sbjct: 272 CTIHQPSSELMAHFDKLVLLAEGRIAFAGNASAALGFFESLGYHCPLTYNPTDYFIKVLA 331
Query: 245 VTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHV 283
+T E +SR +K ICD F+V D AKE+D+EI+ + H+
Sbjct: 332 LTPGSEAASRHAIKSICDRFAVSDVAKELDMEIHLEYHL 370
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|428623692|gb|AFZ40747.1| ABC transporter related-protein [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 149/279 (53%), Positives = 194/279 (69%), Gaps = 3/279 (1%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGF 64
++G A GTL+A+MG SGAGK+TL++AL+ R P +IDG+I +NG+PV G+
Sbjct: 95 NVSGIAKPGTLIALMGPSGAGKTTLMSALAHRSPFGTVIDGEIIMNGRPVCSYVDRESGY 154
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
M+Q D+F+ +LTV EHL MA L++DRR R +N L+ +L L S+ TRIG +
Sbjct: 155 MHQDDIFAENLTVIEHLTVMARLRMDRRTSTVARKRRVNQLMRQLSLYESRFTRIGG--L 212
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGGERKRL+FATELLTDP LL CDEPTTGLDS SA KL+ ++R +Q KTV+
Sbjct: 213 DGHKTLSGGERKRLAFATELLTDPGLLFCDEPTTGLDSSSALKLVSLLRASAAQ-GKTVI 271
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLA 244
CTIHQPSSEL+ FDK++LLA+ R AF G+ AAL F ES GY CP YNP D+ IK LA
Sbjct: 272 CTIHQPSSELMAHFDKLVLLAEGRIAFAGNASAALGFFESLGYHCPLTYNPTDYFIKVLA 331
Query: 245 VTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHV 283
+T E +SR +K ICD F+V D AKE+D+EI+ + H+
Sbjct: 332 LTPGSEAASRHAIKSICDRFAVSDVAKELDMEIHLEYHL 370
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|428623698|gb|AFZ40748.1| mutant ABC transporter related-protein [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 149/279 (53%), Positives = 194/279 (69%), Gaps = 3/279 (1%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGF 64
++G A GTL+A+MG SGAGK+TL++AL+ R P +IDG+I +NG+PV G+
Sbjct: 95 NVSGIAKPGTLIALMGPSGAGKTTLMSALAHRSPFGTVIDGEIIMNGRPVCSYVDRESGY 154
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
M+Q D+F+ +LTV EHL MA L++DRR R +N L+ +L L S+ TRIG +
Sbjct: 155 MHQDDIFAENLTVIEHLTVMARLRMDRRTSTVARKRRVNQLMRQLSLYESRFTRIGG--L 212
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGGERKRL+FATELLTDP LL CDEPTTGLDS SA KL+ ++R +Q KTV+
Sbjct: 213 DGHKTLSGGERKRLAFATELLTDPGLLFCDEPTTGLDSSSALKLVSLLRASVAQ-GKTVI 271
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLA 244
CTIHQPSSEL+ FDK++LLA+ R AF G+ AAL F ES GY CP YNP D+ IK LA
Sbjct: 272 CTIHQPSSELMAHFDKLVLLAEGRIAFAGNASAALGFFESLGYHCPLTYNPTDYFIKVLA 331
Query: 245 VTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHV 283
+T E +SR +K ICD F+V D AKE+D+EI+ + H+
Sbjct: 332 LTPGSEAASRHAIKSICDRFAVSDVAKELDMEIHLEYHL 370
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195428545|ref|XP_002062333.1| GK16717 [Drosophila willistoni] gi|194158418|gb|EDW73319.1| GK16717 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 290 bits (743), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 144/278 (51%), Positives = 192/278 (69%), Gaps = 3/278 (1%)
Query: 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMY 66
TGA +GTL+A+MGASG+GK+TL++ L+ R P ++ GDI +NG+ + G++Y
Sbjct: 92 TGAIQAGTLMALMGASGSGKTTLMSTLAYRQPAGTVVQGDILINGRRIGPFMHRISGYVY 151
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q DLF +LTV EHL FMA L+LDRRV +R +IN LL GL+++ HTRIGS
Sbjct: 152 QDDLFIGALTVMEHLNFMAHLRLDRRVSGEERRLIINELLERTGLISAAHTRIGSGD--D 209
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
K VLSGGERKRL+FA ELL +P +L CDEPTTGLDSFSA +L+ + EL +Q+ T+LCT
Sbjct: 210 KKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSFSAQQLVATLYEL-AQKGTTILCT 268
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVT 246
IHQPSS+L D F+ ++LLAD R AF GS AL+F + GY CP YNPADFLI LA
Sbjct: 269 IHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLATD 328
Query: 247 TNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVG 284
E +S+R + +CD+F+V AK+ D+ +N + H+
Sbjct: 329 PGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEIHMA 366
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194750697|ref|XP_001957666.1| GF23914 [Drosophila ananassae] gi|190624948|gb|EDV40472.1| GF23914 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 144/278 (51%), Positives = 191/278 (68%), Gaps = 3/278 (1%)
Query: 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMY 66
TGA GTL+A+MG+SG+GK+TL++ L+ R P ++ GDI +NG+ + G++Y
Sbjct: 97 TGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIGPFMHRISGYVY 156
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q DLF SLTV EHL FMA L+LDRRV +R +IN LL GL+++ HTRIGS
Sbjct: 157 QDDLFIGSLTVLEHLNFMAHLRLDRRVSKDERRLIINELLERTGLLSAAHTRIGSGD--D 214
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
K VLSGGERKRL+FA ELL +P +L CDEPTTGLDSFSA +L+ + EL +Q+ T+LCT
Sbjct: 215 KKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSFSAQQLVATLYEL-AQKGTTILCT 273
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVT 246
IHQPSS+L D F+ ++LLAD R AF GS AL+F + GY CP YNPADFLI LA
Sbjct: 274 IHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLATD 333
Query: 247 TNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVG 284
E +S+R + +CD+F+V AK+ D+ +N + H+
Sbjct: 334 PGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEIHMA 371
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195495106|ref|XP_002095126.1| GE19858 [Drosophila yakuba] gi|194181227|gb|EDW94838.1| GE19858 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 142/278 (51%), Positives = 191/278 (68%), Gaps = 3/278 (1%)
Query: 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMY 66
TGA GTL+A+MG+SG+GK+TL++ L+ R P ++ GDI +NG+ + G++Y
Sbjct: 96 TGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIGPFMHRISGYVY 155
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q DLF +LTV EHL FMA L+LDRRV +R +IN LL GL+++ HTRIGS
Sbjct: 156 QDDLFLGTLTVLEHLNFMAHLRLDRRVSKEERRLIINELLERTGLLSAAHTRIGSGD--D 213
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
K VLSGGERKRL+FA ELL +P +L CDEPTTGLDS+SA +L+ + EL +Q+ T+LCT
Sbjct: 214 KKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYEL-AQKGTTILCT 272
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVT 246
IHQPSS+L D F+ ++LLAD R AF GS AL+F + GY CP YNPADFLI LA
Sbjct: 273 IHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLATD 332
Query: 247 TNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVG 284
E +S+R + +CD+F+V AK+ D+ +N + H+
Sbjct: 333 PGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEIHMA 370
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195168149|ref|XP_002024894.1| GL17865 [Drosophila persimilis] gi|198462864|ref|XP_001352584.2| GA18101 [Drosophila pseudoobscura pseudoobscura] gi|194108324|gb|EDW30367.1| GL17865 [Drosophila persimilis] gi|198151015|gb|EAL30082.2| GA18101 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/278 (51%), Positives = 190/278 (68%), Gaps = 3/278 (1%)
Query: 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMY 66
TGA GTL+A+MG+SG+GK+TL++ L+ R P ++ GDI +NG+ + G++Y
Sbjct: 97 TGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIGPFMHRISGYVY 156
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q DLF SLTV EHL FMA L+LDRRV +R +IN LL GL+++ TRIGS
Sbjct: 157 QDDLFIGSLTVLEHLNFMAHLRLDRRVSREERRLIINELLERTGLLSAAQTRIGSGD--D 214
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
K VLSGGERKRL+FA ELL +P +L CDEPTTGLDSFSA +L+ + EL +Q+ T+LCT
Sbjct: 215 KKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSFSAQQLVATLYEL-AQKGTTILCT 273
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVT 246
IHQPSS+L D F+ ++LLAD R AF GS AL+F + GY CP YNPADFLI LA
Sbjct: 274 IHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLATD 333
Query: 247 TNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVG 284
E +S+R + +CD+F+V AK+ D+ +N + H+
Sbjct: 334 PGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEIHMA 371
|
Source: Drosophila persimilis Species: Drosophila persimilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 290 | ||||||
| FB|FBgn0003515 | 666 | st "scarlet" [Drosophila melan | 0.944 | 0.411 | 0.509 | 1e-68 | |
| FB|FBgn0003996 | 687 | w "white" [Drosophila melanoga | 0.910 | 0.384 | 0.470 | 3.4e-61 | |
| WB|WBGene00012925 | 619 | wht-8 [Caenorhabditis elegans | 0.886 | 0.415 | 0.405 | 5.8e-50 | |
| WB|WBGene00007513 | 610 | wht-2 [Caenorhabditis elegans | 0.9 | 0.427 | 0.413 | 6.7e-49 | |
| WB|WBGene00015479 | 598 | wht-1 [Caenorhabditis elegans | 0.913 | 0.443 | 0.403 | 2.9e-48 | |
| UNIPROTKB|Q11180 | 598 | wht-1 "ABC transporter ATP-bin | 0.913 | 0.443 | 0.403 | 2.9e-48 | |
| UNIPROTKB|E3LWM9 | 654 | Cre-wht-1 "CRE-WHT-1 protein" | 0.913 | 0.405 | 0.403 | 4.7e-48 | |
| WB|WBGene00007060 | 613 | wht-6 [Caenorhabditis elegans | 0.906 | 0.429 | 0.406 | 3e-46 | |
| FB|FBgn0000241 | 675 | bw "brown" [Drosophila melanog | 0.572 | 0.245 | 0.457 | 2e-45 | |
| WB|WBGene00021535 | 684 | wht-7 [Caenorhabditis elegans | 0.668 | 0.283 | 0.434 | 3.2e-43 |
| FB|FBgn0003515 st "scarlet" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 141/277 (50%), Positives = 189/277 (68%)
Query: 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMY 66
TGA GTL+A+MG+SG+GK+TL++ L+ R P ++ GDI +NG+ + G++Y
Sbjct: 95 TGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIGPFMHRISGYVY 154
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q DLF SLTV EHL FMA L+LDRRV +R +I LL GL+++ TRIGS
Sbjct: 155 QDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGD--D 212
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
K VLSGGERKRL+FA ELL +P +L CDEPTTGLDS+SA +L+ + EL +Q+ T+LCT
Sbjct: 213 KKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYEL-AQKGTTILCT 271
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVT 246
IHQPSS+L D F+ ++LLAD R AF GS AL+F + GY CP YNPADFLI LA
Sbjct: 272 IHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLATD 331
Query: 247 TNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHV 283
E +S+R + +CD+F+V AK+ D+ +N + H+
Sbjct: 332 PGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEIHM 368
|
|
| FB|FBgn0003996 w "white" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 127/270 (47%), Positives = 185/270 (68%)
Query: 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIID-GDIRV-NGKPVEGK-FRSACGF 64
G A G L+A+MG+SGAGK+TLL AL+ R P + +R+ NG+PV+ K ++ C +
Sbjct: 118 GVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCAY 177
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+ Q DLF SLT EHL F A++++ R + QR+A ++ ++ EL L QHT IG
Sbjct: 178 VQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGR 237
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+ LSGGERKRL+FA+E LTDP LL+CDEPT+GLDSF+A +++++++L SQ+ KTV+
Sbjct: 238 VKG--LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKL-SQKGKTVI 294
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLA 244
TIHQPSSEL ++FDKI+L+A+ R AF+G+ A+ F G CP YNPADF ++ LA
Sbjct: 295 LTIHQPSSELFELFDKILLMAEGRVAFLGTPSEAVDFFSYVGAQCPTNYNPADFYVQVLA 354
Query: 245 VTTNDELSSRRRLKRICDEFSVCDFAKEVD 274
V E+ SR R+ +ICD F++ A++++
Sbjct: 355 VVPGREIESRDRIAKICDNFAISKVARDME 384
|
|
| WB|WBGene00012925 wht-8 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 105/259 (40%), Positives = 163/259 (62%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM 65
++G A+ G ++A+MGASGAGK+TLL L QR ++G+I VNG+ + S ++
Sbjct: 53 VSGCAVPGEVIALMGASGAGKTTLLNTLLQRNLRGLQVEGEILVNGQNIGKGVTSVSAYV 112
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q DLF +LTV EHL A L+L R +N ++ E+ L + +RIG I
Sbjct: 113 QQEDLFMGTLTVKEHLDIQAKLRLPPGTSTTARATRVNEVMNEMLLEKPRDSRIGVPGI- 171
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
K +SGGE KRL+FATE++ +P ++ CDEPTTGLDS + ++++ + ++ ++ KT++C
Sbjct: 172 -KKGISGGEMKRLAFATEMINNPPIIFCDEPTTGLDSHMSLQVVKTLEQMALEKGKTIIC 230
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAV 245
TIHQPSSE+ ++FDK++ LA R AF G+ D A+ S GY P NPAD+ I +LA+
Sbjct: 231 TIHQPSSEVFEIFDKVVFLAQGRIAFHGAIDEAIHHFSSCGYQVPDHTNPADYFIDTLAI 290
Query: 246 TTNDELSSRRRLKRICDEF 264
++ + + R + +CD+F
Sbjct: 291 KPSEAEACKSRCQELCDKF 309
|
|
| WB|WBGene00007513 wht-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 110/266 (41%), Positives = 170/266 (63%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM 65
++G A G L+A+MGASGAGK+TLL L R G ++VNG + + G+
Sbjct: 54 VSGIAKPGQLLALMGASGAGKTTLLNMLLSRNLRGLETSGSVKVNGHELGRGITAISGYA 113
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q +LF +LTV E+L A L+++ + +R + +++ +LGL Q+TRIG+
Sbjct: 114 QQDELFVGTLTVKEYLDIQAKLRVNGDSEKRRR--RVGNVMSQLGLYKCQNTRIGTIG-G 170
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
QK + SGGE +RL+FA ELL++P++L CDEPTTGLDSF A +++++ L ++ +TV+C
Sbjct: 171 QKGI-SGGEMRRLTFACELLSNPSILFCDEPTTGLDSFMAESVVQVLSNL-AKSGRTVIC 228
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAV 245
TIHQPSS+L MFD+++ +A +TAF+GS A+ F E G+ CP +NPAD +I +LAV
Sbjct: 229 TIHQPSSQLYLMFDRVMFMAGGKTAFLGSPRDAIQFFEDAGFACPRNFNPADLIIHTLAV 288
Query: 246 TTNDELSSRRRLKRICDEFSVCDFAK 271
N+E R+R++ I +F + +
Sbjct: 289 MPNEEDKCRQRIEVIYTKFQNSSYGR 314
|
|
| WB|WBGene00015479 wht-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 109/270 (40%), Positives = 165/270 (61%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-EGKFRSACGF 64
++G A SG L+AI+G+SGAGK+TL+ L+ R + + G I ++G+ + K R F
Sbjct: 13 VSGMAESGKLLAILGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGRRANKWKIREMSAF 72
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+ QHD+F ++T EHL FMA L++ D+ ++R + +L ++GL T IG +
Sbjct: 73 VQQHDMFVGTMTAREHLQFMARLRMGDQYYSDHERQLRVEQVLTQMGLKKCADTVIGIPN 132
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
Q LS GE+KRLSFA+E+LT P +L CDEPT+GLD+F A +++ +R L + TV
Sbjct: 133 --QLKGLSCGEKKRLSFASEILTCPKILFCDEPTSGLDAFMAGHVVQALRSL-ADNGMTV 189
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSL 243
+ TIHQPSS + +F+ + L+A R ++G D A+ E GYPCP YNPAD LI++L
Sbjct: 190 IITIHQPSSHVYSLFNNVCLMACGRVIYLGPGDQAVPLFEKCGYPCPAYYNPADHLIRTL 249
Query: 244 AVTTNDELSSRRRLKRICDEFSVCDFAKEV 273
AV +D +S + + +I F D + V
Sbjct: 250 AVIDSDRATSMKTISKIRQGFLSTDLGQSV 279
|
|
| UNIPROTKB|Q11180 wht-1 "ABC transporter ATP-binding protein/permease wht-1" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 109/270 (40%), Positives = 165/270 (61%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-EGKFRSACGF 64
++G A SG L+AI+G+SGAGK+TL+ L+ R + + G I ++G+ + K R F
Sbjct: 13 VSGMAESGKLLAILGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGRRANKWKIREMSAF 72
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+ QHD+F ++T EHL FMA L++ D+ ++R + +L ++GL T IG +
Sbjct: 73 VQQHDMFVGTMTAREHLQFMARLRMGDQYYSDHERQLRVEQVLTQMGLKKCADTVIGIPN 132
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
Q LS GE+KRLSFA+E+LT P +L CDEPT+GLD+F A +++ +R L + TV
Sbjct: 133 --QLKGLSCGEKKRLSFASEILTCPKILFCDEPTSGLDAFMAGHVVQALRSL-ADNGMTV 189
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSL 243
+ TIHQPSS + +F+ + L+A R ++G D A+ E GYPCP YNPAD LI++L
Sbjct: 190 IITIHQPSSHVYSLFNNVCLMACGRVIYLGPGDQAVPLFEKCGYPCPAYYNPADHLIRTL 249
Query: 244 AVTTNDELSSRRRLKRICDEFSVCDFAKEV 273
AV +D +S + + +I F D + V
Sbjct: 250 AVIDSDRATSMKTISKIRQGFLSTDLGQSV 279
|
|
| UNIPROTKB|E3LWM9 Cre-wht-1 "CRE-WHT-1 protein" [Caenorhabditis remanei (taxid:31234)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 109/270 (40%), Positives = 165/270 (61%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-EGKFRSACGF 64
++G A SG L+AIMG+SGAGK+TL+ L+ R + + G I ++GK + K R F
Sbjct: 69 VSGMAESGKLLAIMGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGKRANKWKIREMSAF 128
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ-RIALINSLLIELGLMNSQHTRIGSSS 123
+ QHD+F ++T EHL FMA L++ + + R +N +L ++GL T IG +
Sbjct: 129 VQQHDMFVGTMTAREHLQFMARLRMGSEYYSEEERETRVNQVLTQMGLQKCADTVIGIPN 188
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
Q LS GE+KRL+FA+E+LT P +L CDEPT+GLD+F A +++ +R L + TV
Sbjct: 189 --QLKGLSCGEKKRLAFASEILTCPKILFCDEPTSGLDAFMAGHVVQALRRL-ADNGMTV 245
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSL 243
+ TIHQPSS++ +F+ + L+A R ++G D A+ E G+PCP YNPAD LI++L
Sbjct: 246 IITIHQPSSQVYSLFNNVCLMACGRVIYLGPGDQAVPLFERCGFPCPAYYNPADHLIRTL 305
Query: 244 AVTTNDELSSRRRLKRICDEFSVCDFAKEV 273
AV +D +S + + +I F D + V
Sbjct: 306 AVIDSDRATSMKTISKIRQGFLSTDLGQSV 335
|
|
| WB|WBGene00007060 wht-6 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 109/268 (40%), Positives = 166/268 (61%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM 65
++G A SG L+A+MGASGAGK+TLL L R +G I VNG + K S GF
Sbjct: 54 VSGYAKSGELLALMGASGAGKTTLLNMLMCRNLKGLSTEGTITVNGNEMAHKISSISGFA 113
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q +LF +LTV E+L A L+++ K R + +L +L L + ++IG I
Sbjct: 114 QQEELFVGTLTVKEYLMIQAKLRINGSKKL--REDRVTDVLHQLKLWKCRDSKIGV--IG 169
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
+K +SGGE +RL+FA E+L++P+LL DEPTTGLDSF A +I++++ + ++ +T++C
Sbjct: 170 EKKGISGGEARRLTFACEMLSNPSLLFADEPTTGLDSFMAESVIQILKGI-AKTGRTIIC 228
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAV 245
TIHQPSS+L MF ++I LA+ TAF G+ +++F E G+ P YNP++++I LAV
Sbjct: 229 TIHQPSSQLYQMFHRVIYLANGSTAFQGTPQESISFFEKCGHRVPDEYNPSEWIIYKLAV 288
Query: 246 TTNDELSSRRRLKRICDEFSVCDFAKEV 273
E S R+++I +++ D K V
Sbjct: 289 QPGQEKQSNDRIQKIVEQYEDSDHQKRV 316
|
|
| FB|FBgn0000241 bw "brown" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 361 (132.1 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 81/177 (45%), Positives = 115/177 (64%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACG 63
+ +G +G L+AI+G SGAGK+TLLAA+SQRL + + GD+ +NG +E +
Sbjct: 51 DASGHMKTGDLIAILGGSGAGKTTLLAAISQRLRGN--LTGDVVLNGMAMERHQMTRISS 108
Query: 64 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
F+ Q ++ + T YEHLYFM+ K+ RR ++ + LL+ +GL ++ HTRI
Sbjct: 109 FLPQFEINVKTFTAYEHLYFMSHFKMHRRTTKAEKRQRVADLLLAVGLRDAAHTRI---- 164
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
Q+ LSGGERKRLS A EL+TDP L CDEPTTGLDSFSA +I+ +R L ++R+
Sbjct: 165 --QQ--LSGGERKRLSLAEELITDPIFLFCDEPTTGLDSFSAYSVIKTLRHLCTRRR 217
|
|
| WB|WBGene00021535 wht-7 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
Identities = 86/198 (43%), Positives = 127/198 (64%)
Query: 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF-RSACGFMY 66
G A G + AI+G SGAGK+TLL L++R + G ++VNG E + R C ++
Sbjct: 87 GVARPGEVTAIIGPSGAGKTTLLNVLTKRNLSNLKATGSVKVNGIRAERSYMRQVCAYVQ 146
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q D F SLTV EHL FMA LK+ ++ + S++ LGL + IG+ T+
Sbjct: 147 QDDCFIGSLTVEEHLKFMAKLKMGSEYDLNEQERRVKSVMRSLGLEKIADSIIGTR--TR 204
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
K + SGGE+KRL+FA+E+LT P +L+CDEPT+GLDSF A +++ ++++L R T+L T
Sbjct: 205 KGI-SGGEKKRLAFASEILTSPPILICDEPTSGLDSFLAYQVVCVLKKLAETRNMTILLT 263
Query: 187 IHQPSSELIDMFDKIILL 204
IHQPSS++ +FD+I+ L
Sbjct: 264 IHQPSSQVFQLFDRILFL 281
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P45843 | SCRT_DROME | No assigned EC number | 0.5071 | 0.9482 | 0.4129 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 290 | |||
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-114 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-64 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-61 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-53 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-50 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-46 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-44 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 9e-38 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-33 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-33 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 6e-33 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 8e-32 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-31 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-30 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-29 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-28 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-28 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-27 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-27 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-25 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-25 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 7e-24 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 8e-24 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-23 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-23 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-23 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-23 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 6e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-22 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-22 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-22 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-22 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 9e-22 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-21 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-21 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-21 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-21 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-21 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 9e-21 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-20 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 6e-20 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-20 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-19 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-19 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-19 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-19 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-19 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-18 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-18 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-18 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-18 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-18 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-18 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-18 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-18 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-18 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-18 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-17 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-17 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-17 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-17 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-17 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-17 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 6e-17 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-17 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-17 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 8e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-17 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-16 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-16 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-16 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-16 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-16 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-16 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 5e-16 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-16 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-15 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-15 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-15 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-15 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-15 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 6e-15 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 7e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-15 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 8e-15 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 8e-15 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 9e-15 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-14 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-14 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-14 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-14 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-14 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-14 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-14 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-14 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-14 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 7e-14 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 7e-14 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 7e-14 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-13 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-13 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-13 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-13 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-13 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-13 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-13 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-13 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-13 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-13 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-13 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-13 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-13 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-13 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-12 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-12 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-12 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-12 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-12 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-12 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-12 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 7e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 7e-12 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 7e-12 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-12 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 8e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 8e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 9e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 9e-12 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 9e-12 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-11 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-11 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-11 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-11 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-11 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-11 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-11 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-11 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 5e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-11 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 7e-11 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 8e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-10 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-10 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-10 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-10 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 1e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-10 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-10 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-10 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-10 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-10 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-10 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-10 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-10 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-10 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-10 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-10 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-10 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-10 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 5e-10 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 7e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 7e-10 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 9e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-09 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-09 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-09 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-09 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-09 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-09 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-09 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-09 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 5e-09 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-09 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 6e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 7e-09 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-09 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 7e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 9e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-08 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-08 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-08 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-08 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-08 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-08 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-08 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-08 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-08 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-08 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-08 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 6e-08 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-08 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-07 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-07 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-07 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-07 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 2e-07 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-07 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-07 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-07 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-07 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-07 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 5e-07 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 6e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 7e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 8e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-07 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 9e-07 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 9e-07 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 9e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 9e-07 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-06 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 1e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-06 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-06 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-06 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-06 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-06 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-06 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 4e-06 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 5e-06 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 6e-06 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 6e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 7e-06 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 7e-06 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-05 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 1e-05 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-05 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 2e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR02322 | 179 | TIGR02322, phosphon_PhnN, phosphonate metabolism p | 2e-05 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-05 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 5e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 8e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-04 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-04 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-04 | |
| COG3709 | 192 | COG3709, COG3709, Uncharacterized component of pho | 3e-04 | |
| pfam13207 | 114 | pfam13207, AAA_17, AAA domain | 4e-04 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 5e-04 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 6e-04 | |
| COG0563 | 178 | COG0563, Adk, Adenylate kinase and related kinases | 7e-04 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 7e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 8e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.001 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 0.001 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 0.002 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.002 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 0.002 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.003 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.003 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.003 | |
| PRK09270 | 229 | PRK09270, PRK09270, nucleoside triphosphate hydrol | 0.003 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 0.004 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 342 bits (879), Expect = e-114
Identities = 131/273 (47%), Positives = 186/273 (68%), Gaps = 4/273 (1%)
Query: 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-FRSACGFM 65
+G A G L+A+MG+SGAGK+TL+ AL+ R P G + +NG P++ K R+ ++
Sbjct: 45 SGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYV 104
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q DLF P+LTV EHL F A L++ RRV ++ ++ +L LGL +TRIG
Sbjct: 105 QQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPG-- 162
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
+ LSGGERKRL+FA+ELLTDP LL CDEPT+GLDSF A ++++++ L +Q+ KT++C
Sbjct: 163 RVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL-AQKGKTIIC 221
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAV 245
TIHQPSSEL ++FDKIIL+A+ R A++GS D A+ F G+PCP YNPADF ++ LAV
Sbjct: 222 TIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAV 281
Query: 246 TTNDELSSRRRLKRICDEFSVCDFAKEVDLEIN 278
E SR R+++ICD F+V D +++ + N
Sbjct: 282 IPGSENESRERIEKICDSFAVSDIGRDMLVNTN 314
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 8e-64
Identities = 81/204 (39%), Positives = 126/204 (61%), Gaps = 11/204 (5%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-GKFRSACGFMYQHDL 70
SG ++AI+G+SG+GK+TLL A+S R+ G I NG+P + +F+ ++ Q D+
Sbjct: 32 SGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDI 91
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALI-NSLLIELGLMNSQHTRIGSSSITQKVV 129
P LTV E L + A+L+L R+ R + + LL +L TRIG + +
Sbjct: 92 LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA-----LTRIGGNLVKG--- 143
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
+SGGER+R+S A +LL DP +L+ DEPT+GLDSF+A L+ + +L ++R + V+ TIHQ
Sbjct: 144 ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL-ARRNRIVILTIHQ 202
Query: 190 PSSELIDMFDKIILLADSRTAFIG 213
P S+L +FD+I+LL+ + G
Sbjct: 203 PRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 2e-61
Identities = 81/210 (38%), Positives = 119/210 (56%), Gaps = 43/210 (20%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-EGKFRSACG 63
++G A G L AIMG SGAGKSTLL AL+ R + G++ +NG+P+ + FR G
Sbjct: 27 NVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPLDKRSFRKIIG 85
Query: 64 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
++ Q D+ P+LTV E L F A L+
Sbjct: 86 YVPQDDILHPTLTVRETLMFAAKLR----------------------------------- 110
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGERKR+S A EL+++P+LL DEPT+GLDS SA +++ ++R L + +T+
Sbjct: 111 -----GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL-ADTGRTI 164
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIG 213
+C+IHQPSSE+ ++FDK++LL+ R + G
Sbjct: 165 ICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 4e-53
Identities = 99/252 (39%), Positives = 156/252 (61%), Gaps = 6/252 (2%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM 65
+TG A G ++A++G SG+GKSTLL AL+ R+ + G I N + + GF+
Sbjct: 87 VTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFT-GTILANNRKPTKQILKRTGFV 145
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q D+ P LTV E L F +LL+L + + ++I + S++ ELGL ++T IG+S I
Sbjct: 146 TQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIR 205
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
+SGGERKR+S A E+L +P+LL+ DEPT+GLD+ +A +L+ + L +Q+ KT++
Sbjct: 206 G---ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL-AQKGKTIVT 261
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIK-SLA 244
++HQPSS + MFD +++L++ R F G A+A+ ES G+ + NPADFL+ +
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANG 321
Query: 245 VTTNDELSSRRR 256
V D +S R +
Sbjct: 322 VCQTDGVSEREK 333
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 4e-50
Identities = 71/219 (32%), Positives = 109/219 (49%), Gaps = 18/219 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQH 68
G + ++G +GAGK+TLL L+ L G+I V G V K R G++ Q
Sbjct: 30 PGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQE 86
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
P LTV E+L F A L + +A +RI LL GL + + ++ +
Sbjct: 87 PSLYPELTVRENLEFFARLYGLSKEEAEERI---EELLELFGLEDKANKKVRT------- 136
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG ++RLS A LL DP LL+ DEPT+GLD S ++ ++REL + T+L + H
Sbjct: 137 -LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTH 195
Query: 189 QPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGY 227
E ++ D++I+L D + G+ + +G
Sbjct: 196 I-LEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV 233
|
Length = 293 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 3e-46
Identities = 71/201 (35%), Positives = 108/201 (53%), Gaps = 42/201 (20%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGF 64
++G GTL A+MG SGAGK+TLL L+ R +I G+I +NG+P++ F+ + G+
Sbjct: 25 NISGYVKPGTLTALMGESGAGKTTLLDVLAGR-KTAGVITGEILINGRPLDKNFQRSTGY 83
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+ Q D+ SP+LTV E L F ALL+
Sbjct: 84 VEQQDVHSPNLTVREALRFSALLR------------------------------------ 107
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LS +RKRL+ EL P++L DEPT+GLDS +A ++R +++L + +L
Sbjct: 108 ----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS-GQAIL 162
Query: 185 CTIHQPSSELIDMFDKIILLA 205
CTIHQPS+ + + FD+++LL
Sbjct: 163 CTIHQPSASIFEKFDRLLLLK 183
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 3e-44
Identities = 87/243 (35%), Positives = 141/243 (58%), Gaps = 12/243 (4%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGF 64
+ G GTL A+MGASGAGK+TLL L++R+ I GD VNG+P++ F+ + G+
Sbjct: 781 NVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGY 840
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+ Q DL P+ TV E L F A L+ + V +++ + ++ L + + +G
Sbjct: 841 VQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE 900
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLL-CDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
L+ +RKRL+ EL+ P LLL DEPT+GLDS +A + ++MR+L + + +
Sbjct: 901 G----LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL-ADHGQAI 955
Query: 184 LCTIHQPSSELIDMFDKIILLAD-SRTAFIG--SKDAA--LAFLESQGYP-CPYGYNPAD 237
LCTIHQPS+ L + FD+++LL +T + G +++ + + E G P CP NPA+
Sbjct: 956 LCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAE 1015
Query: 238 FLI 240
+++
Sbjct: 1016 WML 1018
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 9e-38
Identities = 76/201 (37%), Positives = 126/201 (62%), Gaps = 6/201 (2%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP-VEGKFRSACG 63
E+TGA G L A+MG SGAGK+TL+ L+ R I+GDIR++G P + F G
Sbjct: 898 EVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIRISGFPKKQETFARISG 956
Query: 64 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+ Q+D+ SP +TV E L + A L+L + V +++ ++ ++ + L N + +G
Sbjct: 957 YCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPG 1016
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+T LS +RKRL+ A EL+ +P+++ DEPT+GLD+ +A+ ++R +R T +TV
Sbjct: 1017 VTG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTV 1072
Query: 184 LCTIHQPSSELIDMFDKIILL 204
+CTIHQPS ++ + FD+++L+
Sbjct: 1073 VCTIHQPSIDIFEAFDELLLM 1093
|
Length = 1470 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 5e-33
Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 37/211 (17%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSAC 62
+G G +V ++G G+G STLL AL+ R + ++GDI NG P + K+
Sbjct: 26 FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEI 85
Query: 63 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
++ + D+ P+LTV E L F K + V+
Sbjct: 86 IYVSEEDVHFPTLTVRETLDFALRCKGNEFVR---------------------------- 117
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
+SGGERKR+S A L++ ++L D T GLDS +A ++++ +R + K T
Sbjct: 118 ------GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIG 213
+++Q S E+ D+FDK+++L + R + G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 5e-33
Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 33/207 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIID----GDIRVNGKPVEG-------KFR-S 60
G VAI+G SG+GKSTLL L +D G++ +NGK + K R
Sbjct: 31 GEFVAIVGPSGSGKSTLLNLLGG-------LDKPTSGEVLINGKDLTKLSEKELAKLRRK 83
Query: 61 ACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
GF++Q +L P LTV E++ L+ A +R LL LGL + +
Sbjct: 84 KIGFVFQNFNLL-PDLTVLENVELPLLI---AGKSAGRRKRAAEELLEVLGLEDRLLKK- 138
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
++ LSGG+++R++ A L+ +P ++L DEPT LDS +A +++ ++REL +R
Sbjct: 139 ---KPSE---LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER 192
Query: 180 KKTVLCTIHQPSSELIDMFDKIILLAD 206
KT++ H P EL D++I L D
Sbjct: 193 GKTIIMVTHDP--ELAKYADRVIELKD 217
|
Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 6e-33
Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 18/239 (7%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI-IDGDIRVNGKP---VEGKFRSACGFMYQH 68
G L ++G G+G STLL ++ I ++G I +G ++ +R + +
Sbjct: 87 GELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAET 146
Query: 69 DLFSPSLTVYEHLYFMALLK--------LDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
D+ P LTV E L F A K + R A + + GL ++++T++G
Sbjct: 147 DVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVY---MATYGLSHTRNTKVG 203
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
+ + +SGGERKR+S A L + D T GLDS +A + IR ++ +
Sbjct: 204 NDFVRG---VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILD 260
Query: 181 KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFL 239
T L I+Q S + ++FDK+I+L + + G D A + E G+ CP ADFL
Sbjct: 261 TTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFL 319
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 8e-32
Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 27/204 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ- 67
G V I+G +G+GKSTLL L+ L G++ V+GK + + R G ++Q
Sbjct: 27 GEFVLIVGPNGSGKSTLLRLLNGLLGP---TSGEVLVDGKDLTKLSLKELRRKVGLVFQN 83
Query: 68 --HDLFSPSLTVYEHLYF-MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
F P TV E + F + L L + + L +GL + +
Sbjct: 84 PDDQFFGP--TVEEEVAFGLENLGLPE----EEIEERVEEALELVGLEGLRDRSPFT--- 134
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+++R++ A L DP +LL DEPT GLD +L+ ++++L ++ K ++
Sbjct: 135 -----LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIII 189
Query: 185 CTIHQPSSELIDMFDKIILLADSR 208
T H L+++ D++I+L D +
Sbjct: 190 VT-HDL-DLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 1e-31
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 32/206 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSA-CGF 64
G VAI+G SG+GKSTLL L G++RV+G + FR GF
Sbjct: 30 GEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGF 86
Query: 65 MYQHDLFSPSLTVYEH----LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
++Q P LT E+ L + K +RR +A + LL +GL + +
Sbjct: 87 VFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEE-------LLERVGLGDRLNHYPS 139
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGG+++R++ A L DP ++L DEPT LDS + +++ ++REL +
Sbjct: 140 E--------LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAG 191
Query: 181 KTVLCTIHQPSSELIDMFDKIILLAD 206
T++ H P EL + D+II L D
Sbjct: 192 TTIVVVTHDP--ELAEYADRIIELRD 215
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-30
Identities = 64/207 (30%), Positives = 100/207 (48%), Gaps = 24/207 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC----GFMYQH 68
G + ++G +GAGK+T L L+ L G +NG + R A G+ Q
Sbjct: 28 GEIFGLLGHNGAGKTTTLKMLTGELRPTS---GTAYINGYSI-RTDRKAARQSLGYCPQF 83
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
D LTV EHL F A LK + + + LL LGL + + R +
Sbjct: 84 DALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRART------- 133
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG +++LS A L+ P++LL DEPT+GLD S + ++ E+ R +++ T H
Sbjct: 134 -LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGR--SIILTTH 190
Query: 189 QPSSELIDMF-DKIILLADSRTAFIGS 214
S + + D+I +++D + IGS
Sbjct: 191 --SMDEAEALCDRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-29
Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 24/202 (11%)
Query: 17 AIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSP 73
++G +GAGK+TL+ L+ P G IR++G+ V K R G++ Q P
Sbjct: 29 GLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYP 85
Query: 74 SLTVYEHLYFMALLK--LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
+ TV E L ++A LK + VKA ++ +L + L + +IGS LS
Sbjct: 86 NFTVREFLDYIAWLKGIPSKEVKAR-----VDEVLELVNLGDRAKKKIGS--------LS 132
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
GG R+R+ A L+ DP++L+ DEPT GLD + ++ EL R V+ + H
Sbjct: 133 GGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDR--IVILSTHI-V 189
Query: 192 SELIDMFDKIILLADSRTAFIG 213
++ + +++ +L + F G
Sbjct: 190 EDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-28
Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 55/200 (27%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQH 68
G + ++G +GAGK+TL+ + L D G+I+V GK + + + G++ +
Sbjct: 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEE 81
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
+LTV E+L
Sbjct: 82 PSLYENLTVRENLK---------------------------------------------- 95
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG ++RL+ A LL DP LL+ DEPT+GLD S + ++REL + KT+L + H
Sbjct: 96 -LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL-KKEGKTILLSSH 153
Query: 189 QPSSELIDMFDKIILLADSR 208
E + D++ +L + R
Sbjct: 154 IL-EEAERLCDRVAILNNGR 172
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-28
Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 27/218 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFM 65
G ++AI+G SG+GKSTLL + L D G++ ++G+ + G + R G +
Sbjct: 26 GEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGML 82
Query: 66 YQHD-LFSPSLTVYEHLYFMAL--LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
+Q LF SLTV+E++ F +L + I L L +GL ++
Sbjct: 83 FQSGALFD-SLTVFENVAFPLREHTRLSEEE--IREIVL--EKLEAVGLRGAEDLYPAE- 136
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGG +KR++ A L DP LLL DEPT GLD ++ + ++R L + T
Sbjct: 137 -------LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLT 189
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
+ H + D+I +L D + G+ + A
Sbjct: 190 SIMVTHD-LDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 8e-28
Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 25/201 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G +AI+G +GAGKSTLL A+ L G IRV GKP+E K R G++ Q
Sbjct: 24 PGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE-KERKRIGYVPQRRSI 79
Query: 72 SPS--LTVYEHLYFMALLKLDRRVKAYQRI-----ALINSLLIELGLMNSQHTRIGSSSI 124
++V + + L+ L ++R+ A ++ L +GL +IG
Sbjct: 80 DRDFPISVRD----VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGE--- 132
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+++R+ A L+ DP LLL DEP G+D + + ++REL + T+L
Sbjct: 133 -----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL-RREGMTIL 186
Query: 185 CTIHQPSSELIDMFDKIILLA 205
H +++ FD+++LL
Sbjct: 187 VVTHDLGL-VLEYFDRVLLLN 206
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-27
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 38/224 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAA-LSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGF 64
G ++AI+G SG+GKSTLL L PD G+I ++G+ + + R G
Sbjct: 34 GEILAILGGSGSGKSTLLRLILGLLRPDK----GEILIDGEDIPQLSEEELYEIRKRMGV 89
Query: 65 MYQHD-LFSPSLTVYEHLYFM--ALLKLDRRVKAYQRIALINSLLIELG-----LMNSQH 116
++Q LFS SLTV+E++ F KL + + + L+ L+ L L S+
Sbjct: 90 LFQQGALFS-SLTVFENVAFPLREHTKLPESL--IRELVLMKLELVGLRGAAADLYPSE- 145
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
LSGG RKR++ A + DP LL DEPT+GLD SA + ++REL
Sbjct: 146 -------------LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELN 192
Query: 177 SQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
TV+ H S L+ + D++ +LAD + G+ + LA
Sbjct: 193 DALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-27
Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 25/201 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC-GFMYQHDL 70
G + A++G +GAGKSTLL A+ L G+I++ GKPV + + G++ Q
Sbjct: 29 KGEITALIGPNGAGKSTLLKAILGLLKPSS---GEIKIFGKPVRKRRKRLRIGYVPQKSS 85
Query: 71 FSPS--LTVYEHLYFMAL-----LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
S +TV + + L RR+ + ++ L +G+ + + +IG
Sbjct: 86 VDRSFPITVKD---VVLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIGE-- 139
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGG+++R+ A L +P LLL DEP TG+D ++ +++EL Q KTV
Sbjct: 140 ------LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL-RQEGKTV 192
Query: 184 LCTIHQPSSELIDMFDKIILL 204
L H ++ FD++I L
Sbjct: 193 LMVTHDL-GLVMAYFDRVICL 212
|
Length = 254 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 6e-27
Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 24/218 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDC----IIDGDIRVNGKPVEGKFRSACGFMYQ 67
G VA++G SGAGKSTLL L+ + I DI + R G ++Q
Sbjct: 26 PGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQ 85
Query: 68 HDLFSPSLTVYEH-----LYFMALLK-LDRRV-KAYQRIALINSLLIELGLMNSQHTRIG 120
L+V E+ L + + L K ++ AL + L +GL++ + R
Sbjct: 86 QFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRAL--AALERVGLLDKAYQRAD 143
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGG+++R++ A L+ P L+L DEP LD S+ +++ +++ + +
Sbjct: 144 Q--------LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG 195
Query: 181 KTVLCTIHQPSSELI-DMFDKIILLADSRTAFIGSKDA 217
TV+ ++HQ +L + D+I+ L D R F G
Sbjct: 196 ITVIVSLHQV--DLAREYADRIVGLKDGRIVFDGPPAE 231
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-25
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 23/218 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-----FRSACGFMYQ 67
G V ++G +G+GKSTLL L+ L G++ V+G + R G ++Q
Sbjct: 30 GERVLLIGPNGSGKSTLLKLLNGLLKP---TSGEVLVDGLDTSSEKSLLELRQKVGLVFQ 86
Query: 68 H-DLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+ D TV + + F L L R + L +GL +
Sbjct: 87 NPDDQLFGPTVEDEVAFGLENLGLPREEI----EERVAEALELVGLEELLDRPPFN---- 138
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGG+++R++ A L P +LL DEPT GLD +L+ ++++L + KT++
Sbjct: 139 ----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIII 194
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 223
H +++ D++++L D + G E
Sbjct: 195 VTHDL-ELVLEYADRVVVLDDGKILADGDPAEIFNDAE 231
|
Length = 235 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 3e-25
Identities = 61/212 (28%), Positives = 96/212 (45%), Gaps = 27/212 (12%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQ---------RLPDDCIIDGDIRVNGKPVEGKFRSA 61
L+ + I GASGAGKSTLL ++ L + D ++N P + K
Sbjct: 21 LNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI--- 77
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
G ++Q P L V E+L F LK R + + + L L+ H + +
Sbjct: 78 -GLVFQQYALFPHLNVRENLAFG--LKRKRNREDRISVDEL------LDLLGLDH--LLN 126
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
Q LSGGE++R++ A L P LLL DEP + LD +L+ ++++
Sbjct: 127 RYPAQ---LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213
V+ H SE + D+I+++ D R +IG
Sbjct: 184 PVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 7e-24
Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 19/198 (9%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGD--IRVNGKPVEGKFRSACGFMY 66
G + AI+G SG+GKSTLL L + ++G +N K R G+++
Sbjct: 23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLF 82
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q+ + TV E+L LK + K ++ L ++GL +I
Sbjct: 83 QNFALIENETVEENL--DLGLKYKKLSKK-EKREKKKEALEKVGLNLKLKQKIYE----- 134
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGGE++R++ A +L P L+L DEPT LD + +++ ++ EL + KT++
Sbjct: 135 ---LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIV 190
Query: 187 IHQPSSELIDMFDKIILL 204
H P E+ D++I L
Sbjct: 191 THDP--EVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 8e-24
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 42/223 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFM 65
G +VAI+G SGAGKSTLL +L+ + G+I NG + K R G +
Sbjct: 30 GEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGKELRKLRRDIGMI 86
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRR----------VKAYQRIALINSLLIELGLMNSQ 115
+Q P L+V E++ L +L K + AL L +G+++
Sbjct: 87 FQQFNLVPRLSVLENV---LLGRLGYTSTWRSLFGLFSKEDKAQAL--DALERVGILDKA 141
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+ R + LSGG+++R++ A L+ P ++L DEP LD SA K++ +++++
Sbjct: 142 YQRAST--------LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193
Query: 176 TSQRKKTVLCTIHQPSSELIDM----FDKIILLADSRTAFIGS 214
+ TV+ +HQ +D+ D+II L R F G
Sbjct: 194 NQEDGITVIVNLHQ-----VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 1e-23
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 55/203 (27%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFM 65
+G +VA++G SG+GKSTLL ++ G I ++G+ + R G +
Sbjct: 25 AGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPPLRRRIGMV 81
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+Q P LTV E+ I LGL
Sbjct: 82 FQDFALFPHLTVLEN--------------------------IALGL-------------- 101
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
SGG+++R++ A L DP +LL DEPT+ LD + ++ +++ L +Q TV+
Sbjct: 102 -----SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVL 156
Query: 186 TIHQPSSELIDMFDKIILLADSR 208
H E + D++++L D +
Sbjct: 157 VTHDL-DEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 2e-23
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 35/217 (16%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFMYQ 67
G + I+G +G+GKSTLL L+ L G++ ++GK + ++ Q
Sbjct: 27 KGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKELAKKLAYVPQ 83
Query: 68 HDLFSPSLTVYE---------HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
LTVYE F K D + + L LGL +
Sbjct: 84 SPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI--------VEEALELLGLEHLADRP 135
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+ LSGGER+R+ A L + +LL DEPT+ LD +++ ++R+L +
Sbjct: 136 VDE--------LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 179 RKKTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGS 214
+ TV+ +H L + D +ILL D + G+
Sbjct: 188 KGLTVVMVLHDL--NLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 3e-23
Identities = 78/256 (30%), Positives = 129/256 (50%), Gaps = 39/256 (15%)
Query: 18 IMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF--RSACGFMYQHDLFSPSL 75
++G +GK+TLL AL+ +L + G+I NG + +F R ++ Q+D+ +
Sbjct: 196 LLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLN-EFVPRKTSAYISQNDVHVGVM 254
Query: 76 TVYEHLYFMA-----------LLKLDRR---------------VKAYQRIALINSLLIE- 108
TV E L F A L +L RR +KA + +SL+ +
Sbjct: 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDY 314
Query: 109 ----LGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA-LLLCDEPTTGLDSF 163
LGL + T +G I +SGG++KR++ E++ P L DE +TGLDS
Sbjct: 315 TLKILGLDICKDTIVGDEMIRG---ISGGQKKRVT-TGEMIVGPTKTLFMDEISTGLDSS 370
Query: 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 223
+ ++++ ++++ + TVL ++ QP+ E D+FD IILL++ + + G +D L F E
Sbjct: 371 TTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFE 430
Query: 224 SQGYPCPYGYNPADFL 239
S G+ CP ADFL
Sbjct: 431 SCGFKCPERKGTADFL 446
|
Length = 1470 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 5e-23
Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 19/199 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHD- 69
G +A++G SG GK+TLL ++ D G+I ++G+ V G R G ++Q
Sbjct: 26 GEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGVPPERRNIGMVFQDYA 82
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
LF P LTV E++ F LKL R V + A + LL +GL +
Sbjct: 83 LF-PHLTVAENIAFG--LKL-RGVPKAEIRARVRELLELVGLEGLLNRYPHE-------- 130
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGG+++R++ A L +P+LLL DEP + LD+ +L ++EL + T + H
Sbjct: 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190
Query: 190 PSSELIDMFDKIILLADSR 208
E + + D+I ++ + R
Sbjct: 191 Q-EEALALADRIAVMNEGR 208
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 6e-23
Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 16/192 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G VA++G SG GKSTLL ++ G++ V+G+PV G G+++Q D
Sbjct: 30 GEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTGP-GPDRGYVFQQDALL 85
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
P LTV +++ L+L + V + LL +GL ++ LSG
Sbjct: 86 PWLTVLDNVAL--GLEL-QGVPKAEARERAEELLELVGLSGFENAYPHQ--------LSG 134
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G R+R++ A L DP +LL DEP + LD+ + +L + ++ + KTVL H
Sbjct: 135 GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD-ID 193
Query: 193 ELIDMFDKIILL 204
E + + D++++L
Sbjct: 194 EAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 91.3 bits (228), Expect = 1e-22
Identities = 59/202 (29%), Positives = 88/202 (43%), Gaps = 45/202 (22%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
+G +V I+G +GAGKSTLL L+ L G+I ++GK +
Sbjct: 24 AGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLA---------------- 64
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
L + A ++IA + L LGL + LS
Sbjct: 65 ----------------SLSPKELA-RKIAYVPQALELLGLAHLADRPFNE--------LS 99
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
GGER+R+ A L +P +LL DEPT+ LD +L+ ++R L +R KTV+ +H +
Sbjct: 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159
Query: 192 SELIDMFDKIILLADSRTAFIG 213
D++ILL D R G
Sbjct: 160 LAAR-YADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 2e-22
Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G VAI+G SG GKSTLL ++ G++ ++G+PV G G+++Q D
Sbjct: 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGP-DIGYVFQEDAL 83
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
P LTV +++ L+L R + LL +GL + LS
Sbjct: 84 LPWLTVLDNVAL--GLEL-RGKSKAEARERAKELLELVGLAGFEDKYPH--------QLS 132
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
GG R+R++ A L T P LLL DEP LD+ + +L + L + +KTVL H
Sbjct: 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV- 191
Query: 192 SELIDMFDKIILLAD 206
E + + D++++L++
Sbjct: 192 DEAVYLADRVVVLSN 206
|
Length = 248 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 3e-22
Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 30/218 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGF 64
G VAI+G SGAGKSTLL ++ RL + G I + G + K R G
Sbjct: 27 PGEFVAIIGPSGAGKSTLLRCIN-RLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGM 83
Query: 65 MYQHDLFSPSLTVYEH-----LYFMALLK--LDRRVKAYQRIALINSLLIELGLMNSQHT 117
++QH LTV E+ L + + L R + + AL S L +GL + +
Sbjct: 84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERAL--SALERVGLADKAYQ 141
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
R LSGG+++R++ A L P L+L DEP LD ++ +++ ++ +
Sbjct: 142 RADQ--------LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINK 193
Query: 178 QRKKTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGS 214
+ TV+ +HQ +L + D+I+ L F G+
Sbjct: 194 EDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 4e-22
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 20/181 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-------FRSACGFM 65
G + ++G SG+GKSTL A+ L G I +GK + R +
Sbjct: 31 GETLGLVGESGSGKSTLARAI-LGL--LKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMV 87
Query: 66 YQHDLFS--PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+Q + S P +T+ E + + K ++ A++ LL+ +GL + +
Sbjct: 88 FQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLL-LLVGVGL----PEEVLNRY 142
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ LSGG+R+R++ A L +P LL+ DEPT+ LD ++++ ++++L + T+
Sbjct: 143 PHE---LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTL 199
Query: 184 L 184
L
Sbjct: 200 L 200
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 9e-22
Identities = 68/210 (32%), Positives = 109/210 (51%), Gaps = 23/210 (10%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPV--EGKFRSACGFMY 66
+G+LVA++G SG+GKSTLL A L Q PD G IR+NG+ GF++
Sbjct: 25 TGSLVALLGPSGSGKSTLLRIIAGLEQ--PDS----GRIRLNGQDATRVHARDRKIGFVF 78
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
QH LTV +++ F L++ + KA + A + LL + L +G Q
Sbjct: 79 QHYALFKHLTVRDNIAFG--LEIRKHPKAKIK-ARVEELLELVQL-----EGLGDRYPNQ 130
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+R+R++ A L +P +LL DEP LD+ +L +R+L + T +
Sbjct: 131 ---LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV 187
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKD 216
H E +++ D+I+++++ + IGS D
Sbjct: 188 THD-QEEAMEVADRIVVMSNGKIEQIGSPD 216
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-21
Identities = 60/197 (30%), Positives = 91/197 (46%), Gaps = 18/197 (9%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMYQ 67
G VA++G SGAGKSTLL L + +G I VNG P+ +R ++ Q
Sbjct: 347 PGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQ 403
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
H T+ E++ D ++ A ++ + L T IG
Sbjct: 404 HPFLFAG-TIAENIRLARPDASDAEIREALERAGLDEFVAALPQG--LDTPIGEGG---- 456
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+ +RL+ A L D LLL DEPT LD+ + ++++ +R L R TVL
Sbjct: 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGR--TVLLVT 514
Query: 188 HQPSSELIDMFDKIILL 204
H+ L + D+I++L
Sbjct: 515 HRL--ALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 88.2 bits (220), Expect = 2e-21
Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 52/197 (26%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G VAI+G SG+GKSTLL L + G+I ++G +
Sbjct: 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLR---------------- 67
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
LD + IA + Q + S +I ++ +LS
Sbjct: 68 ----------------DLDLESL-RKNIAYV-----------PQDPFLFSGTI-RENILS 98
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
GG+R+R++ A LL DP +L+ DE T+ LD + + ++ +R L + KTV+ H+ S
Sbjct: 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA--KGKTVIVIAHRLS 156
Query: 192 SELIDMFDKIILLADSR 208
+ I D+II+L D R
Sbjct: 157 T--IRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 2e-21
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 26/205 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-------GKFRS-ACGF 64
G +VAI+G+SG+GKSTLL L D G++ NG+ + K R+ GF
Sbjct: 31 GEIVAIVGSSGSGKSTLLHLLGGL---DNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGF 87
Query: 65 MYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+YQ H L P T E++ M LL + VK + A +L ++GL + + R
Sbjct: 88 IYQFHHLL-PDFTALENV-AMPLLIGKKSVKEAKERAY--EMLEKVGLEHRINHRPSE-- 141
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGER+R++ A L+ P+L+L DEPT LD+ +A + +M EL + +
Sbjct: 142 ------LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSF 195
Query: 184 LCTIHQPSSELIDMFDKIILLADSR 208
L H EL D+++ + D +
Sbjct: 196 LVVTHDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 3e-21
Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 22/204 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDC-IIDGDIRVNGKPV----EGKFRSACG---- 63
G ++ I+G SG+GKSTL AL LP+ I G++ ++G+ + E + R G
Sbjct: 35 GEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIA 94
Query: 64 FMYQH--DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
++Q +P +T+ + + L+L + + LL ++GL + +
Sbjct: 95 MIFQDPMTSLNPVMTIGDQI--REALRLHGKGSRAEARKRAVELLEQVGLPDPERRD--- 149
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGG R+R+ A L P LL+ DEPTT LD + ++++ ++++L +
Sbjct: 150 -RYPH--QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGM 206
Query: 182 TVLCTIHQPSSELI-DMFDKIILL 204
VL H ++ ++ D+++++
Sbjct: 207 AVLFITHDL--GVVAELADRVVVM 228
|
Length = 539 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 7e-21
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 41/212 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEG------KFRSACGF 64
G +V I+G SG+GKSTLL ++ L PD G I ++G + + R G
Sbjct: 26 GEVVVIIGPSGSGKSTLLRCIN-LLEEPDS----GTIIIDGLKLTDDKKNINELRQKVGM 80
Query: 65 MYQH-DLFSPSLTVYEHLYFMALLKLDRRVKA-YQRIALINSLLIELGLMNSQHTRIGSS 122
++Q +LF P LTV E++ +A +K+ KA + AL LL ++GL +
Sbjct: 81 VFQQFNLF-PHLTVLENI-TLAPIKVKGMSKAEAEERAL--ELLEKVGLADKADAYPAQ- 135
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGG+++R++ A L +P ++L DEPT+ LD +++ +M++L ++ T
Sbjct: 136 -------LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDL-AEEGMT 187
Query: 183 VLCTIHQPSSELIDM-F-----DKIILLADSR 208
++ H +M F D++I + D R
Sbjct: 188 MVVVTH-------EMGFAREVADRVIFMDDGR 212
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 9e-21
Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 21/207 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G L A++GASGAGKSTLL L L G+IRVNG + +R ++ Q+
Sbjct: 347 GQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQN 403
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVK-AYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
+ T+ E++ D + A + L+ + GL T IG
Sbjct: 404 PYL-FAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGL----DTVIGEGGAG-- 456
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+ +RL+ A LL+ +LLL DEPT LD+ + +++ ++EL ++KTVL
Sbjct: 457 --LSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA--KQKTVLVIT 512
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGS 214
H+ E D+I++L + R G+
Sbjct: 513 HRL--EDAADADRIVVLDNGRLVEQGT 537
|
Length = 559 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 4e-20
Identities = 73/224 (32%), Positives = 103/224 (45%), Gaps = 29/224 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA---CGFMYQH 68
G VA++G +GAGKSTL + L++ +G I V G + R+A G ++Q
Sbjct: 26 PGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQ 82
Query: 69 DLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
L+V ++L Y AL L R A RIA LL LGL ++
Sbjct: 83 PTLDLDLSVRQNLRYHAALHGLSRAE-ARARIA---ELLARLGLAERADDKVRE------ 132
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
L+GG R+R+ A LL PALLL DEPT GLD S + + +R L + +VL
Sbjct: 133 --LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWAT 190
Query: 188 H-----QPSSELIDMFDKIILLADSRTAFI----GSKDAALAFL 222
H + L+ + + +LAD A + G D AFL
Sbjct: 191 HLVDEIEADDRLV-VLHRGRVLADGAAAELRGATGGADLEAAFL 233
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 6e-20
Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 29/188 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALS--QRLPDDCIIDGDIRVNGKPVEG-------KFRSACG 63
G + I+G SGAGKSTL+ ++ +R P G + V+G + K R G
Sbjct: 31 GEIFGIIGRSGAGKSTLIRCINGLER-PTS----GSVLVDGTDLTLLSGKELRKARRRIG 85
Query: 64 FMYQH-DLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
++QH +L S S TV+E++ AL L++ KA + + LL +GL +
Sbjct: 86 MIFQHFNLLS-SRTVFENV---ALPLEIAGVPKA-EIEERVLELLELVGLEDKADAYPAQ 140
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGG+++R+ A L +P +LLCDE T+ LD + ++ ++R++ +
Sbjct: 141 --------LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGL 192
Query: 182 TVLCTIHQ 189
T++ H+
Sbjct: 193 TIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 6e-20
Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 22/185 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-----FRSACGFMY 66
G + I+G SG+GKSTL L+ G I ++GKP+ K F ++
Sbjct: 32 RGETLGIVGESGSGKSTLARLLAGLEKPSS---GSILLDGKPLAPKKRAKAFYRPVQMVF 88
Query: 67 QHDLFS--PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
Q S P TV L L+ K+ QRIA LL ++GL S R
Sbjct: 89 QDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQRIA---ELLDQVGLPPSFLDR----RP 139
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+ LSGG+R+R++ A L+ +P LL+ DEPT+ LD ++++ ++ EL +R T L
Sbjct: 140 HE---LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYL 196
Query: 185 CTIHQ 189
H
Sbjct: 197 FISHD 201
|
Length = 252 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 1e-19
Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 22/214 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G VAI+G SG+GKSTLL L G I ++G + R G++ Q
Sbjct: 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQD 555
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQ 126
S ++ E++ D + ++A + + L G T +G
Sbjct: 556 PFLF-SGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGY----DTPVGEGGAN- 609
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+R+RL+ A LL+ P +LL DE T+ LD + + +++ + ++ + +TV+
Sbjct: 610 ---LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI--LQGRTVIII 664
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ I D+II+L + GS + LA
Sbjct: 665 AHRLST--IRSADRIIVLDQGKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 1e-19
Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 20/213 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF----RSACGFMYQ- 67
G VAI+G SG+GKSTL+ L RL D G+I ++G + R G + Q
Sbjct: 355 GEKVAIVGPSGSGKSTLIKLL-LRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQD 411
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
LFS T+ E++ D ++ ++A + + L + T +G +
Sbjct: 412 PLLFS--GTIRENIALGRPDATDEEIEEALKLANAHEFIANLP--DGYDTIVGERGVN-- 465
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+RL+ A LL +P +L+ DE T+ LD+ + + + +++L + +T L
Sbjct: 466 --LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIA 521
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ I D+II+L + R G+ + LA
Sbjct: 522 HRLST--IKNADRIIVLDNGRIVERGTHEELLA 552
|
Length = 567 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-19
Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 28/200 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFR-SACGFMYQ--- 67
+G ++A+ G +GAGK+TL L+ L + G I +NGKP++ K R + G++ Q
Sbjct: 25 AGEIIALTGKNGAGKTTLAKILAG-LIKES--SGSILLNGKPIKAKERRKSIGYVMQDVD 81
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
+ LF+ S V E L L L ++ + L +L + +H
Sbjct: 82 YQLFTDS--VREELL----LGLKELDAGNEQAETVLKDL-DLYALKERHPLS-------- 126
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+++RL+ A LL+ LL+ DEPT+GLD + ++ ++REL +Q K V+
Sbjct: 127 --LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVIT 183
Query: 188 HQPSSELIDMF-DKIILLAD 206
H E + D+++LLA+
Sbjct: 184 HDY--EFLAKVCDRVLLLAN 201
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-19
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGG+R+R++ A LL +P LLL DEPT+GLD S +L+ ++REL ++ +TV+ H
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AEEGRTVIIVTHD 139
Query: 190 PSSELIDMFDKIILLADSR 208
P D++I+L D +
Sbjct: 140 P-ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 3e-19
Identities = 58/194 (29%), Positives = 102/194 (52%), Gaps = 16/194 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
SG LV ++G SG GK+TLL ++ + G I++NG+ +EG + G ++Q++
Sbjct: 30 SGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP-GAERGVVFQNEAL 85
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
P L V +++ F L+L R ++ QR + + +L +GL ++H I LS
Sbjct: 86 LPWLNVIDNVAFG--LQL-RGIEKAQRREIAHQMLALVGLEGAEHKYI--------WQLS 134
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
GG R+R+ A L +P LLL DEP LD+ + ++ ++ +L + K VL H
Sbjct: 135 GGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194
Query: 192 SELIDMFDKIILLA 205
L + ++++L+
Sbjct: 195 EALF-LATRLVVLS 207
|
Length = 259 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 4e-19
Identities = 69/214 (32%), Positives = 107/214 (50%), Gaps = 24/214 (11%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSA-----CG 63
SG LVA++G SGAGKSTLL A L PD G IR+NG+ + A G
Sbjct: 27 SGELVALLGPSGAGKSTLLRIIAGLET--PDA----GRIRLNGRVLFDVSNLAVRDRKVG 80
Query: 64 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
F++QH P +TV +++ F ++ +R +A R A + LL L+ +
Sbjct: 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR-ARVEELLR---LVQLEGL--ADRY 134
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
Q LSGG+R+R++ A L +P +LL DEP LD+ +L R +R+L + T
Sbjct: 135 PAQ---LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217
+ H E +++ D++++L R +G D
Sbjct: 192 VFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 5e-19
Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 23/206 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCI--IDGDIRVNGKPVEGKFRSACGFMYQHD 69
G + ++G +GAGK+T L L+ L PD +DG V +P E + R GF+
Sbjct: 31 GEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG-FDVVKEPAEARRR--LGFVSDST 87
Query: 70 LFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
LT E+L YF L L + A + L LG+ R+G
Sbjct: 88 GLYDRLTARENLEYFAGLYGLKGD----ELTARLEELADRLGMEELLDRRVGG------- 136
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT-I 187
S G R++++ A L+ DP +LL DEPTTGLD + L +R+L + K + T I
Sbjct: 137 -FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI 195
Query: 188 HQPSSELIDMFDKIILLADSRTAFIG 213
Q L D++++L R + G
Sbjct: 196 MQEVERLC---DRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-18
Identities = 57/208 (27%), Positives = 104/208 (50%), Gaps = 30/208 (14%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSA 61
G +V + G SG+GK+TLL L R + G ++V G+ + G + R
Sbjct: 30 PGEIVILTGPSGSGKTTLLTLIGGL--RSVQE----GSLKVLGQELYGASEKELVQLRRN 83
Query: 62 CGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
G+++Q H+L LT +++ MAL +L + + ++L +GL +
Sbjct: 84 IGYIFQAHNLL-GFLTARQNVQ-MAL-ELQPNLSYQEARERARAMLEAVGLGDHLDYYPH 140
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
+ LSGG+++R++ A L+ P L+L DEPT LDS S ++ +M++L ++
Sbjct: 141 N--------LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQG 192
Query: 181 KTVLCTIHQPSSELIDMFDKIILLADSR 208
T+L H ++D+ D+I+ + D +
Sbjct: 193 CTILIVTHDN--RILDVADRIVHMEDGK 218
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 2e-18
Identities = 53/188 (28%), Positives = 76/188 (40%), Gaps = 29/188 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-----FRSACGFMYQ 67
G +V ++G +GAGK+TL ++ G + G+ + G R +Q
Sbjct: 30 GEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRGRDITGLPPHRIARLGIARTFQ 86
Query: 68 HDLFSPSLTVYE--------HLYFMALLKLDRRVKAYQRI---ALINSLLIELGLMNSQH 116
P LTV E L LL R K + A LL +GL
Sbjct: 87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAR--ELLEFVGLGELAD 144
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
G+ LS G+++RL A L T P LLL DEP GL+ +L ++REL
Sbjct: 145 RPAGN--------LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196
Query: 177 SQRKKTVL 184
+ T+L
Sbjct: 197 DRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 3e-18
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMY-- 66
G +VA++G +GAGK+TLL + + G I +G+ + G R+ G Y
Sbjct: 28 RGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHERARLGIAYVP 84
Query: 67 -QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+F P LTV E+L + + + + + L L ++ R G+
Sbjct: 85 EGRRIF-PRLTVEENL-LLGAYARRDKEAQERDLEEVYELFPRLKER--RNQRAGT---- 136
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGGE++ L+ A L++ P LLL DEP+ GL ++ ++EL + T+L
Sbjct: 137 ----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTIL 191
|
Length = 237 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 3e-18
Identities = 55/193 (28%), Positives = 80/193 (41%), Gaps = 42/193 (21%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----------FRSAC 62
G + ++G +GAGK+TL +S L G + +G+ + G R+
Sbjct: 26 GEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRT-- 80
Query: 63 GFMYQHD-LFSPSLTVYE----------HLYFMALLKLDRRVKAYQRIALINSLLIELGL 111
+Q LF P LTV E + +A +R LL +GL
Sbjct: 81 ---FQIPRLF-PELTVLENVMVAAQARTGSGLLLARARREEREARERAE---ELLERVGL 133
Query: 112 MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM 171
+ G LS G+++RL A L TDP LLL DEP GL+ +L +
Sbjct: 134 ADLADRPAGE--------LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL 185
Query: 172 MRELTSQRKKTVL 184
+REL +R TVL
Sbjct: 186 IREL-RERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 3e-18
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 42/221 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEGK-----FRSACGFM 65
G +V I+G SG+GKSTLL L+ L PD G I V+G+ V K R G +
Sbjct: 28 GEVVVIIGPSGSGKSTLLRCLN-GLEEPDS----GSITVDGEDVGDKKDILKLRRKVGMV 82
Query: 66 YQH-DLFSPSLTVYEHLYF--MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
+Q +LF P LTV E++ + + KL + +A ++ AL LL ++GL +
Sbjct: 83 FQQFNLF-PHLTVLENVTLAPVKVKKLSKA-EAREK-AL--ELLEKVGLADKADAYPAQ- 136
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGG+++R++ A L DP ++L DEPT+ LD +++ +M++L ++ T
Sbjct: 137 -------LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL-AEEGMT 188
Query: 183 VLCTIHQPSSELIDM-F-----DKIILLADSRTAFIGSKDA 217
++ H +M F D++I + + G +
Sbjct: 189 MIIVTH-------EMGFAREVADRVIFMDQGKIIEEGPPEE 222
|
Length = 240 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 3e-18
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 23/199 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G +AI G SG GKSTLL ++ + G + G+ V +R + Q
Sbjct: 29 GEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQT 85
Query: 69 -DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
LF TV ++L F ++ R R A ++ LL L I + +IT+
Sbjct: 86 PALFGD--TVEDNLIFPWQIRNRR----PDRAAALD-LLARFAL----PDSILTKNITE- 133
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGGE++R++ L P +LL DE T+ LD + + M+ ++ VL
Sbjct: 134 --LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWIT 191
Query: 188 HQPSSELIDMFDKIILLAD 206
H + I DK+I L
Sbjct: 192 HDK-DQAIRHADKVITLQP 209
|
Length = 223 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 3e-18
Identities = 58/198 (29%), Positives = 90/198 (45%), Gaps = 27/198 (13%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVEG----- 56
L G L G VAI+G SG+GKSTLLA L+ P G++R+ G+P+
Sbjct: 26 LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS----GEVRLLGQPLHKLDEDA 81
Query: 57 --KFRSA-CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN 113
R+ GF++Q P+LT E++ L+ + + +LL +GL
Sbjct: 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAK---ALLEAVGL-- 136
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
R+ LSGGE++R++ A P +L DEPT LD + K+ ++
Sbjct: 137 --GKRLTHYPAQ----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLF 190
Query: 174 ELTSQRKKTVLCTIHQPS 191
L +R T++ H P
Sbjct: 191 ALNRERGTTLVLVTHDPQ 208
|
Length = 228 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 4e-18
Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQH 68
G + ++G +GAGK+T + L+ L G V G V + R G ++Q
Sbjct: 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQD 81
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
LT +E+LY A L + +RI LL +GL+ + + +
Sbjct: 82 LSVDDELTGWENLYIHARLYGVPGAERRERID---ELLDFVGLLEAADRLVKT------- 131
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
SGG R+RL A L+ P +L DEPT GLD + + + + +L + T+L T H
Sbjct: 132 -YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 5e-18
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 22/154 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-----FRSACGFMYQ 67
G +VA++G +GAGK+TLL + LP G IR +G+ + G R+ G++ +
Sbjct: 26 GEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERARAGIGYVPE 82
Query: 68 -HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
+F P LTV E+L + R + R+ + L L + G+
Sbjct: 83 GRRIF-PELTVEENL-LLGAYARRRAKRK-ARLERVYELFPRLKER--RKQLAGT----- 132
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160
LSGGE++ L+ A L++ P LLL DEP+ GL
Sbjct: 133 ---LSGGEQQMLAIARALMSRPKLLLLDEPSEGL 163
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 6e-18
Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 21/205 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK--FRSACGFMYQ-HD 69
G +VAIMG SGAGKSTLL ++ + G I+VN + G ++ ++Q ++
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80
Query: 70 LFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
LF LTV +++ L L ++ A Q+ + ++G+ +
Sbjct: 81 LF-AHLTVRQNI---GLGLHPGLKLNAEQQ-EKVVDAAQQVGIADYLDRLPEQ------- 128
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+R+R++ A L+ +LL DEP + LD +++ ++++L S+R++T+L H
Sbjct: 129 -LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187
Query: 189 QPSSELIDMFDKIILLADSRTAFIG 213
S+ + +I +++ + +
Sbjct: 188 HL-SDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 6e-18
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 25/204 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-------GKFRSACGFM 65
G + + G SGAGK+TLL L L G +R+ G+ V R G +
Sbjct: 28 GEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVV 84
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+Q P TVYE++ L ++ + QR + + L ++GL +
Sbjct: 85 FQDFRLLPDRTVYENVAL-PLEVRGKKEREIQR--RVGAALRQVGLEHKADAFPEQ---- 137
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGGE++R++ A ++ P LLL DEPT LD + +++ +++ L ++R TV+
Sbjct: 138 ----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL-NKRGTTVIV 192
Query: 186 TIHQPSSELIDMFDK-IILLADSR 208
H L+D +I+L D R
Sbjct: 193 ATHDL--SLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 7e-18
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 22/187 (11%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPV-------EGKFR-SACGFM 65
+ I+G SG+GKS L A+ LP I+ G+I +GK + K R +
Sbjct: 34 LGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMI 93
Query: 66 YQHDLFS--PSLTVYEHL--YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
+Q + S P +T+ + + K + +A +R LL +G+ + + R
Sbjct: 94 FQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAI---ELLELVGIPDPE--RRLK 148
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
S + LSGG R+R+ A L +P LL+ DEPTT LD ++++ +++EL ++
Sbjct: 149 SYPHE---LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGT 205
Query: 182 TVLCTIH 188
++ H
Sbjct: 206 ALILITH 212
|
Length = 316 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-17
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 23/137 (16%)
Query: 27 STLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHL 81
STLL ++ L G I ++G+ G R G ++Q P LTV E+L
Sbjct: 1 STLLKLITGLLQPTS---GTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA 141
+F ++ + A L +GL + + LSGG+++R++ A
Sbjct: 58 FF--------GLRDKEADARAEEALERVGLPDFLDREPVGT-------LSGGQKQRVAIA 102
Query: 142 TELLTDPALLLCDEPTT 158
LL P LLL DEPT
Sbjct: 103 RALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-17
Identities = 62/185 (33%), Positives = 87/185 (47%), Gaps = 28/185 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA---CGFMYQH 68
SG ++G +GAGKST+ + D G I V G PV + R A G + Q
Sbjct: 66 SGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQF 122
Query: 69 DLFSPSLTVYEHL-----YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
D TV E+L YF + + A+I SLL + R+ S +
Sbjct: 123 DNLDLEFTVRENLLVFGRYF--------GMSTREIEAVIPSLL--------EFARLESKA 166
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ LSGG ++RL+ A L+ DP LL+ DEPTTGLD + + +R L + R KT+
Sbjct: 167 DARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTI 225
Query: 184 LCTIH 188
L T H
Sbjct: 226 LLTTH 230
|
Length = 340 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-17
Identities = 54/210 (25%), Positives = 100/210 (47%), Gaps = 25/210 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK-----PVEGKFRSACGFMY 66
G I+G +G+GKS LL ++ + D G I +NGK P E + ++
Sbjct: 24 RGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPE---KRDISYVP 77
Query: 67 Q-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q + LF P +TVY+++ + + + + +++ I +L L+N +
Sbjct: 78 QNYALF-PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET------- 129
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGGE++R++ A L+ +P +LL DEP + LD + KL ++++ + TVL
Sbjct: 130 ----LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLH 185
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSK 215
H E + DK+ ++ + + +G
Sbjct: 186 VTHD-FEEAWALADKVAIMLNGKLIQVGKP 214
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 1e-17
Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 28/203 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV--EGKFRSACGFMYQHD 69
G + +G +GAGK+T + + + D G+I +GK + G + +
Sbjct: 25 KGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAP 81
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
F P+LT E+L +A L R+ I+ +L +GL +S ++ S+
Sbjct: 82 GFYPNLTARENLRLLARLLGIRK-------KRIDEVLDVVGLKDSAKKKVKGFSL----- 129
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT---SQRKKTVLCT 186
G ++RL A LL +P LL+ DEPT GLD I+ +REL + TVL +
Sbjct: 130 ---GMKQRLGIALALLGNPDLLILDEPTNGLDPDG----IKELRELILSLRDQGITVLIS 182
Query: 187 IHQPSSELIDMFDKIILLADSRT 209
H SE+ + D+I ++ +
Sbjct: 183 SHL-LSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 1e-17
Identities = 64/207 (30%), Positives = 95/207 (45%), Gaps = 22/207 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMYQH 68
G VAI+G SG+GKSTLL L+ G I +NG + E R + Q
Sbjct: 364 GEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQR 420
Query: 69 -DLFSPSLTVYEHLYFMALLKLDRRV-KAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
LFS +L ++L D + A Q++ L L + +T +G
Sbjct: 421 VHLFSGTLR--DNLRLANPDASDEELWAALQQVGLEKLLE---SAPDGLNTWLGEGGRR- 474
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGGER+RL+ A LL D L L DEPT GLD + +++ ++ E KT+L
Sbjct: 475 ---LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMV 529
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIG 213
H+ ++ D+II+L + + G
Sbjct: 530 THRLRG--LERMDRIIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-17
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 25/187 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGKPVEGK------FRSACG 63
G + A++G SG GKSTLL L RL D +G++ ++GK + R G
Sbjct: 26 GEITALIGPSGCGKSTLLRLL-NRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVG 84
Query: 64 FMYQH-DLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
++Q + F ++Y+++ A L+L + + L + L + R+ +
Sbjct: 85 MVFQKPNPFP--GSIYDNV---AYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHA 139
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGG+++RL A L +P +LL DEPT+ LD S +K+ ++ EL +++
Sbjct: 140 LG------LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAEL--KKEY 191
Query: 182 TVLCTIH 188
T++ H
Sbjct: 192 TIVIVTH 198
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-17
Identities = 59/208 (28%), Positives = 104/208 (50%), Gaps = 24/208 (11%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGK--FRSACGFMYQ 67
G V ++G SG GK+TLL A Q P G+I ++G+ + + G ++Q
Sbjct: 31 GEFVTLLGPSGCGKTTLLRMIAGFEQ--PSS----GEILLDGEDITDVPPEKRPIGMVFQ 84
Query: 68 -HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
+ LF P +TV E++ F LK+ +++K + A + L +GL Q
Sbjct: 85 SYALF-PHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGL--EGF---ADRKPHQ 136
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+++R++ A L+ +P +LL DEP + LD+ ++ + ++EL + T +
Sbjct: 137 ---LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV 193
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGS 214
H E + M D+I ++ D R +G+
Sbjct: 194 TH-DQEEALAMSDRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 3e-17
Identities = 64/192 (33%), Positives = 93/192 (48%), Gaps = 28/192 (14%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFR---SA 61
+L+ G ++G +GAGKST+ L + D G I V G+PV + R A
Sbjct: 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVA 78
Query: 62 CGFMYQHDLFSPSLTVYEHL-----YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
G + Q D P TV E+L YF + + A+I SLL +
Sbjct: 79 IGVVPQFDNLDPEFTVRENLLVFGRYF--------GMSTREIEAVIPSLL--------EF 122
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
R+ S + + +LSGG ++RL+ A L+ DP LL+ DEPTTGLD + + +R L
Sbjct: 123 ARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 182
Query: 177 SQRKKTVLCTIH 188
+ R KT+L T H
Sbjct: 183 A-RGKTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 3e-17
Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 37/197 (18%)
Query: 14 TLVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGK--------PVEGKFRSACG 63
+ A+MG SG GKSTLL ++ L ++ ++G++R+ G+ P+E R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE--VRREVG 88
Query: 64 FMYQHDLFSPSLTVYEH----LYFMALLK----LDRRVK-AYQRIALINSLLIELGLMNS 114
++Q+ P LT+Y++ + L+K LD RV+ A ++ AL + + L S
Sbjct: 89 MVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS 148
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
LSGG+R+RL A L P +LL DEPT +D +K+ ++ E
Sbjct: 149 N--------------LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194
Query: 175 LTSQRKKTVLCTIHQPS 191
L +++ T++ H P+
Sbjct: 195 L--KKEYTIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-17
Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 21/211 (9%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKF--RSACGFMY 66
SG LVA++G SG+GK+TLL A L + PD G I G+ GF++
Sbjct: 27 SGELVALLGPSGSGKTTLLRLIAGLER--PDS----GTILFGGEDATDVPVQERNVGFVF 80
Query: 67 QHDLFSPSLTVYEHLYF-MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
QH +TV++++ F + + R + A ++ LL L+ Q +
Sbjct: 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELL---KLV--QLDWLADRYPA 135
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
Q LSGG+R+R++ A L +P +LL DEP LD+ +L R +R L + T +
Sbjct: 136 Q---LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVF 192
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
H E +++ D+++++ R +G+ D
Sbjct: 193 VTHD-QEEALEVADRVVVMNKGRIEQVGTPD 222
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 4e-17
Identities = 62/191 (32%), Positives = 84/191 (43%), Gaps = 34/191 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMYQ- 67
G VAI+G SG+GKSTLLA L+ L G++ ++G PV + + R Q
Sbjct: 361 GERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDEVRRRVSVCAQD 417
Query: 68 -HDLFSPSLTVYEHLYFMA-------LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
H LF TV E+L L RV + L + T +
Sbjct: 418 AH-LFDT--TVRENLRLARPDATDEELWAALERVGLADWLR---------ALPDGLDTVL 465
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
G LSGGER+RL+ A LL D +LL DEPT LD+ +A +L+ + S R
Sbjct: 466 GEGGAR----LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGR 521
Query: 180 KKTVLCTIHQP 190
TV+ H
Sbjct: 522 --TVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 5e-17
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 28/193 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR-LPDDCIIDGDIRVNGKPVEG-------KFRSACGF 64
G V ++G SGAGKSTLL + + LP G IRVNG+ V R G
Sbjct: 27 GEFVFLVGPSGAGKSTLLKLIYKEELPTS----GTIRVNGQDVSDLRGRAIPYLRRKIGV 82
Query: 65 MYQHDLFSPSLTVYEHLYF-MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
++Q P VYE++ F + + + R +R+ + L +GL +
Sbjct: 83 VFQDFRLLPDRNVYENVAFALEVTGVPPRE-IRKRVP---AALELVGLSHKHRALPAE-- 136
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGE++R++ A ++ P +L+ DEPT LD + +++ +++++ ++ TV
Sbjct: 137 ------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI-NKAGTTV 189
Query: 184 LCTIHQPSSELID 196
+ H + EL+D
Sbjct: 190 VVATH--AKELVD 200
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 6e-17
Identities = 66/227 (29%), Positives = 97/227 (42%), Gaps = 43/227 (18%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGF 64
G +VAI+G +GAGKSTLL ALS L D G++R+NG+P+ + R
Sbjct: 27 PGEVVAILGPNGAGKSTLLRALSGELSPDS---GEVRLNGRPLADWSPAELARRR---AV 80
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+ QH S TV E + M L+ + L ++ L +
Sbjct: 81 LPQHSSLSFPFTVEE-VVAMGRAPHGLSRAEDDA--LVAAALAQVDL-----AHLAGRDY 132
Query: 125 TQKVVLSGGERKRLSFA------TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
Q LSGGE++R+ A E P LL DEPT+ LD ++R+ R+L +
Sbjct: 133 PQ---LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE 189
Query: 179 RKKTVLCTIHQPSSELID-----MF-DKIILLADSRTAFIGSKDAAL 219
R V+ +H D + D+I+LL R G+ L
Sbjct: 190 RGLAVIVVLH-------DLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 8e-17
Identities = 57/202 (28%), Positives = 104/202 (51%), Gaps = 18/202 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G + ++G +GAGK+T + + + D G++ +GKP++ R+ G++ +
Sbjct: 26 GEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARNRIGYLPEERGLY 82
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
P + V + L ++A LK ++ +A +RI + L L L + R+ LS
Sbjct: 83 PKMKVIDQLVYLAQLKGLKKEEARRRI---DEWLERLELSEYANKRVEE--------LSK 131
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G ++++ F ++ DP LL+ DEP +GLD + L ++REL KTV+ + HQ
Sbjct: 132 GNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQ--M 188
Query: 193 ELI-DMFDKIILLADSRTAFIG 213
EL+ ++ D+++LL R G
Sbjct: 189 ELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 8e-17
Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 22/202 (10%)
Query: 17 AIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP---VEGKF--RSACGF--MYQHD 69
AI+G +GAGK+TLL+ L+ P GD+ + G+ E F R G H+
Sbjct: 61 AIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFELRKRIGLVSSELHE 117
Query: 70 LFSPSLTVYEHLY--FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
F TV + + F A + + + + +A LL LG + GS
Sbjct: 118 RFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS------ 171
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL-TSQRKKTVLCT 186
LS GE++R+ A L+ DP LL+ DEP GLD + +L+ + EL S +L
Sbjct: 172 --LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFV 229
Query: 187 IHQPSSELIDMFDKIILLADSR 208
H E+ F +LL +
Sbjct: 230 THHA-EEIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 8e-17
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 18/213 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
+G VA++G SG+GKSTL+ + R D + G I ++G V R G + Q
Sbjct: 27 AGETVALVGPSGSGKSTLVNLIP-RFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQ 83
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
D+F + TV E++ + V+ R A + ++EL T IG +
Sbjct: 84 -DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELP--EGYDTVIGERGVK-- 138
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+R++ A LL DP +L+ DE T+ LD+ S + + L R T
Sbjct: 139 --LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNR--TTFVIA 194
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ I+ D+I++L D + G+ + LA
Sbjct: 195 HRLST--IENADRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 9e-17
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 24/182 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSA-----CGF 64
G + ++G SG+GKSTL L+ LP G I +G+ + G+ R F
Sbjct: 317 GETLGLVGESGSGKSTLARILAGLLPPSS---GSIIFDGQDLDLTGGELRRLRRRIQMVF 373
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+ +P +TV + L L++ +R A + LL +GL
Sbjct: 374 QDPYSSLNPRMTVGDIL--AEPLRIHGGGSGAERRARVAELLELVGL---------PPEF 422
Query: 125 TQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
+ LSGG+R+R++ A L +P LL+ DEP + LD ++++ ++++L + T
Sbjct: 423 LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLT 482
Query: 183 VL 184
L
Sbjct: 483 YL 484
|
Length = 539 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-16
Identities = 63/214 (29%), Positives = 109/214 (50%), Gaps = 22/214 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G VAI+G SG+GKST+L L R D + G I ++G+ + R A G + Q
Sbjct: 27 GKKVAIVGPSGSGKSTILRLLF-RFYD--VSSGSILIDGQDIREVTLDSLRRAIGVVPQ- 82
Query: 69 D--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
D LF+ T+ ++ + D V + A I+ + + + T +G +
Sbjct: 83 DTVLFND--TIGYNIRYGRPDATDEEVIEAAKAAQIHDKI--MRFPDGYDTIVGE----R 134
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
+ LSGGE++R++ A +L +P +LL DE T+ LD+ + ++ +R+++ + +T +
Sbjct: 135 GLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS--KGRTTIVI 192
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ I DKII+L D R G+ + LA
Sbjct: 193 AHRLST--IVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 36/235 (15%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC 62
L G +L+ G + A++G +GAGKSTL+ LS P D G+I ++GKPV F S
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVA--FSSPR 78
Query: 63 -------GFMYQHDLFSPSLTVYEHLYFMALLK-----LDRRVKAYQRIALINSLLIELG 110
++Q P+L+V E+++ +DR+ +R LL LG
Sbjct: 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRK-AMRRRAR---ELLARLG 134
Query: 111 LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170
L T +G LS +R+ + A L D +L+ DEPT L +L
Sbjct: 135 LDIDPDTLVGD--------LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186
Query: 171 MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQ 225
++R L +Q + + H+ E+ ++ D+I +L D R +G++ A E +
Sbjct: 187 LIRRLKAQGVAIIYIS-HRL-DEVFEIADRITVLRDGRV--VGTRPTAAETSEDE 237
|
Length = 500 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-16
Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 23/213 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVEGK--FRSACGFMYQ-H 68
G +VAI+G SGAGKSTLL ++ P G+I +NG ++Q +
Sbjct: 25 GEIVAILGPSGAGKSTLLNLIAGFETPAS----GEILINGVDHTASPPAERPVSMLFQEN 80
Query: 69 DLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
+LF+ LTV ++ + L L ++ A QR + + ++GL R+
Sbjct: 81 NLFA-HLTVAQN---IGLGLSPGLKLNAEQREK-VEAAAAQVGL-AGFLKRLPGE----- 129
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+R++ A L+ + +LL DEP + LD ++++ ++ +L +RK T+L
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVT 187
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H P + + D+++ L + R A GS L+
Sbjct: 188 HHP-EDAARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-16
Identities = 62/201 (30%), Positives = 99/201 (49%), Gaps = 26/201 (12%)
Query: 16 VAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNG------KPVEGKFRSACGFMYQH 68
VAI+G G+GKSTLL L+ P G + ++G P + R G++ Q
Sbjct: 33 VAIIGRVGSGKSTLLKLLAGLYKPTS----GSVLLDGTDIRQLDPAD--LRRNIGYVPQD 86
Query: 69 -DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
LF +L +++ A L D R+ +A + + N +IG +
Sbjct: 87 VTLFYGTL--RDNITLGAPLADDERILRAAELAGVTDFV--NKHPNGLDLQIGE----RG 138
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+ ++ A LL DP +LL DEPT+ +D S +L +R+L KT++
Sbjct: 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD--KTLIIIT 196
Query: 188 HQPSSELIDMFDKIILLADSR 208
H+PS L+D+ D+II++ R
Sbjct: 197 HRPS--LLDLVDRIIVMDSGR 215
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 3e-16
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 27/189 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEG-------KFRSAC 62
G + I+G SGAGKSTLL ++ L P G + V+G+ + + R
Sbjct: 31 KGEIFGIIGYSGAGKSTLLRLIN-LLERPTS----GSVFVDGQDLTALSEAELRQLRQKI 85
Query: 63 GFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
G ++QH +L S S TV+E++ F L+L KA + + LL +GL +
Sbjct: 86 GMIFQHFNLLS-SRTVFENVAFP--LELAGVPKA-EIKQRVAELLELVGLSDKADRYPAQ 141
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGG+++R++ A L +P +LLCDE T+ LD + ++ +++++ +
Sbjct: 142 --------LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGL 193
Query: 182 TVLCTIHQP 190
T++ H+
Sbjct: 194 TIVLITHEM 202
|
Length = 339 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 3e-16
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 31/215 (14%)
Query: 12 SGTLVAIMGASGAGKSTL---LAALSQRLPDDCIIDGDIRVNG-----KPVEGKFRSACG 63
G +V ++G +GAGK+T + L + PD G I ++G P+ + R G
Sbjct: 25 QGEIVGLLGPNGAGKTTTFYMIVGLVK--PDS----GKILLDGQDITKLPMHKRARLGIG 78
Query: 64 FMYQ-HDLFSPSLTVYEHLY-FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
++ Q +F LTV E++ + + L ++ +R + LL E + + + ++ S
Sbjct: 79 YLPQEASIFR-KLTVEENILAVLEIRGLSKK----EREEKLEELLEEFHITHLRKSK-AS 132
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
S LSGGER+R+ A L T+P LL DEP G+D + + ++++ L R
Sbjct: 133 S-------LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL-KDRGI 184
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
VL T H E + + D+ ++ + + G+ +
Sbjct: 185 GVLITDHN-VRETLSITDRAYIIYEGKVLAEGTPE 218
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 3e-16
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 27/191 (14%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSA 61
E++ A G +V +G +GAGKST + ++ LP D G ++V G+ V + +
Sbjct: 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRN 76
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL-GLMNSQHTRIG 120
G++ +H+ + V E+L F+A + + QR+ +IEL GL QH +IG
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEE----MIELVGLRPEQHKKIG 132
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS---FSASKLIRMMRELTS 177
LS G R+R+ A L+ DP +L+ DEPTTGLD +I+ +
Sbjct: 133 Q--------LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI----- 179
Query: 178 QRKKTVLCTIH 188
+ KT++ + H
Sbjct: 180 GKDKTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-16
Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 35/227 (15%)
Query: 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNG-----KPVE--- 55
+++ A G + ++G +GAGK+TLL ++ L PD G + ++G P
Sbjct: 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS----GKVTIDGVDTVRDPSFVRR 75
Query: 56 --GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN 113
G G + LT E+L + A L R + RIA L L L+
Sbjct: 76 KIGVLFGERGLYAR-------LTARENLKYFARLNGLSRKEIKARIA---ELSKRLQLLE 125
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
R+G S G +++++ A L+ DP++L+ DEPT+GLD + K ++
Sbjct: 126 YLDRRVGE--------FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK 177
Query: 174 ELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
+L ++ + + + E+ + D++I+L GS +A A
Sbjct: 178 QLKNEGRAVIFSS--HIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 4e-16
Identities = 59/195 (30%), Positives = 105/195 (53%), Gaps = 18/195 (9%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
SG L+ ++G SG GK+TLL ++ +P G I ++GKPVEG + G ++Q++
Sbjct: 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP-GAERGVVFQNEGL 81
Query: 72 SPSLTVYEHLYF-MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
P V +++ F + L +++ QR+ + + +L ++GL ++ I L
Sbjct: 82 LPWRNVQDNVAFGLQLAGVEKM----QRLEIAHQMLKKVGLEGAEKRYIWQ--------L 129
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGG+R+R+ A L +P LLL DEP LD+F+ ++ ++ +L + K VL H
Sbjct: 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD- 188
Query: 191 SSELIDMFDKIILLA 205
E + M +++LL+
Sbjct: 189 IEEAVFMATELVLLS 203
|
Length = 255 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 4e-16
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 1 MTELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KF 58
+ + T A G +V +MG SG GKSTLL+ + L G++ +N + ++
Sbjct: 18 LANVNFTIA--KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA 75
Query: 59 RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
+ G ++Q L P L+V ++L L L +K R N+ L GL + H
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNL----LFALPATLKGNARRNAANAALERSGLDGAFHQ- 130
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LSGG+R R++ LL P LL DEP + LD
Sbjct: 131 -------DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 5e-16
Identities = 62/186 (33%), Positives = 92/186 (49%), Gaps = 24/186 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC--------- 62
G ++AI+G+SG+GKSTLL L D GD+ NG+P+ K SA
Sbjct: 34 EGEMMAIVGSSGSGKSTLLHLLGGL---DTPTSGDVIFNGQPMS-KLSSAAKAELRNQKL 89
Query: 63 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
GF+YQ P T E++ M LL ++ AL +L +GL + + R S
Sbjct: 90 GFIYQFHHLLPDFTALENVA-MPLLIGKKKPAEINSRAL--EMLAAVGLEHRANHR--PS 144
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGGER+R++ A L+ +P L+L DEPT LD+ +A + +++ EL +
Sbjct: 145 E------LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTA 198
Query: 183 VLCTIH 188
L H
Sbjct: 199 FLVVTH 204
|
Length = 233 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 7e-16
Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 35/212 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNG----------KPVEGKFRSA 61
G + AI+G SG+GKSTLL ++ P G + +NG +PV F+
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQS----GRVLINGVDVTAAPPADRPVSMLFQ-- 77
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
+++LF LTV +++ L ++ A R A I L +GL + G
Sbjct: 78 -----ENNLF-AHLTVEQNVGLGLSPGL--KLTAEDRQA-IEVALARVGLAGLEKRLPGE 128
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGGER+R++ A L+ D +LL DEP LD ++++ ++ +L ++ K
Sbjct: 129 --------LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM 180
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213
TVL HQP + + +++ L + R A G
Sbjct: 181 TVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 1e-15
Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G + ++G +GAGKSTLL L+ P D G + V G+ GF
Sbjct: 47 RGERIGLIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVS-SLLGLGGGFN------ 96
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
P LT E++Y L R + ++I I ELG + + + S
Sbjct: 97 -PELTGRENIYLNGRLLGLSRKEIDEKIDEIIE-FSELG--DFIDLPVKT--------YS 144
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
G + RL+FA +P +LL DE D+ K R +REL Q K +L + H PS
Sbjct: 145 SGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVS-HDPS 203
Query: 192 SELIDMFDKIILLADSRTAFIG 213
S + + D+ ++L + F G
Sbjct: 204 S-IKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 1e-15
Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 27/192 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----------EGKFRSA 61
+ ++ IMG SG+GKSTLL L++ + I D I+V+GK + K R
Sbjct: 35 NNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDIFQIDAIKLRKE 91
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMAL---LKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
G ++Q P L++Y+++ + +K R +K ++ L ++GL + R
Sbjct: 92 VGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKK-----IVEECLRKVGLWKEVYDR 146
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+ S + LSGG+++RL+ A L P +LL DEPT+ +D ++ + +++ EL +
Sbjct: 147 LNSPASQ----LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL--K 200
Query: 179 RKKTVLCTIHQP 190
+ ++ H P
Sbjct: 201 NEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-15
Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 43/264 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMYQ- 67
G + ++G SG+GK+T L +++ + G+I ++G+ + + R G++ Q
Sbjct: 27 GEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQ 83
Query: 68 HDLFSPSLTVYEHLYFM-ALLKLDRRVKAYQRIALINSLLIELGLMNSQH-TRIGSSSIT 125
LF P LTV E++ + LL D+ + +R + LL +GL S++ R
Sbjct: 84 IGLF-PHLTVAENIATVPKLLGWDKE-RIKKRA---DELLDLVGLDPSEYADRYPHE--- 135
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGG+++R+ A L DP +LL DEP LD + +L ++EL + KT++
Sbjct: 136 ----LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVF 191
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAV 245
H E + + D+I ++ + D LA NPA+ ++
Sbjct: 192 VTHD-IDEALKLADRIAVMDAGEIVQYDTPDEILA-------------NPANDFVEDF-- 235
Query: 246 TTNDELSSRRRLKRICDEFSVCDF 269
R R+ SV D
Sbjct: 236 -----FGESERGLRLLSLVSVADA 254
|
Length = 309 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-15
Identities = 63/185 (34%), Positives = 87/185 (47%), Gaps = 30/185 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAAL-SQRLPDDCIIDGDIRVNGKPVEGKFRSA---CGFMYQH 68
G ++G +GAGK+T L L PD G I + G+PV + R A G + Q
Sbjct: 33 GECFGLLGPNGAGKTTTLRMLLGLTHPDA----GSISLCGEPVPSRARHARQRVGVVPQF 88
Query: 69 DLFSPSLTVYEHL-----YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
D P TV E+L YF + A AL+ LL L N ++G
Sbjct: 89 DNLDPDFTVRENLLVFGRYF--------GLSAAAARALVPPLLEFAKLENKADAKVGE-- 138
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGG ++RL+ A L+ DP +L+ DEPTTGLD + + +R L + R KT+
Sbjct: 139 ------LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTI 191
Query: 184 LCTIH 188
L T H
Sbjct: 192 LLTTH 196
|
Length = 306 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-15
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGK-PVEGK--FRSACGFMY- 66
G +V +G +GAGK+T L LS L P G++RV G P + + F G ++
Sbjct: 46 KGEIVGFIGPNGAGKTTTLKILSGLLQPTS----GEVRVAGLVPWKRRKKFLRRIGVVFG 101
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q L V + Y +A + + +R+ ++ LL + + + Q
Sbjct: 102 QKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELL--------DLEELLDTPVRQ 153
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LS G+R R A LL +P +L DEPT GLD + + ++E +R TVL T
Sbjct: 154 ---LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT 210
Query: 187 IH 188
H
Sbjct: 211 SH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 3e-15
Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 28/216 (12%)
Query: 16 VAIMGASGAGKSTLLAALS-QRLPDD--CIIDG-DIRVNGKPVEGKFRSACGFMYQ-HDL 70
VAI+G G+GKSTLL L P + ++DG DIR P + R G++ Q L
Sbjct: 494 VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR-QIDPAD--LRRNIGYVPQDPRL 550
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIA----LINSLLIELGLMNSQHTRIGSSSITQ 126
F +L +++ A D + +A + L + IG +
Sbjct: 551 FYGTL--RDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQ------IGE----R 598
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+R+ ++ A LL DP +LL DEPT+ +D+ S + ++ + KT++
Sbjct: 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLV 656
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 222
H+ S L+D+ D+II++ + R G KD L L
Sbjct: 657 THRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEAL 690
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 4e-15
Identities = 51/202 (25%), Positives = 95/202 (47%), Gaps = 31/202 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQH 68
G V ++G SG GKSTLL ++ G+I ++G+ V + R ++Q+
Sbjct: 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRG-IAMVFQN 83
Query: 69 DLFSPSLTVYEHLYF------MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
P +TVYE++ F + ++D+RVK ++ LGL + + +
Sbjct: 84 YALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKL---------LGLEHLLNRKPLQ- 133
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGG+R+R++ A L+ P + L DEP + LD+ + +++L + T
Sbjct: 134 -------LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTT 186
Query: 183 VLCTIHQPSSELIDMFDKIILL 204
+ H E + + D+I+++
Sbjct: 187 TIYVTHDQ-VEAMTLADRIVVM 207
|
Length = 338 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 4e-15
Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 42/219 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE------GKFRSACGFMY 66
G + AI+G +GAGKSTL L+ L G I +GKP++ K R + G ++
Sbjct: 32 GEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPIDYSRKGLMKLRESVGMVF 88
Query: 67 Q---HDLFSPSLTVYEHLYFMAL-LKL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
Q + LFS S VY+ + F A+ LKL + V+ AL R G
Sbjct: 89 QDPDNQLFSAS--VYQDVSFGAVNLKLPEDEVRKRVDNAL---------------KRTGI 131
Query: 122 SSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
+ K LS G++KR++ A L+ +P +L+ DEPT GLD S++++++ E+ +
Sbjct: 132 EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKEL 191
Query: 180 KKTVLCTIHQPSSELIDMF----DKIILLADSRTAFIGS 214
T++ H ID+ D + ++ + R G+
Sbjct: 192 GLTIIIATHD-----IDIVPLYCDNVFVMKEGRVILQGN 225
|
Length = 283 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 6e-15
Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 26/216 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL--PDD--CIIDG-DIRVNGKPVEGKFRSACGFMYQ 67
G +V I+G SG+GKSTL L QR P++ ++DG D+ + R G + Q
Sbjct: 28 GEVVGIVGRSGSGKSTL-TKLIQRFYVPENGRVLVDGHDLALADP---AWLRRQVGVVLQ 83
Query: 68 HD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT- 125
+ LF+ S + +++ RV ++A + + EL G +I
Sbjct: 84 ENVLFNRS--IRDNIALADPGMSMERVIEAAKLAGAHDFISEL--------PEGYDTIVG 133
Query: 126 -QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ + R TV+
Sbjct: 134 EQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGR--TVI 191
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ + D+II++ R GS D LA
Sbjct: 192 IIAHRLST--VKNADRIIVMEKGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 6e-15
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 27/180 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQ 67
G + ++G +G GK+TLL L LP + G IR++G+ + + R+ ++ Q
Sbjct: 26 GEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERARAGIAYVPQ 82
Query: 68 -HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSIT 125
++F P LTV E+L L L + ++I I L L M R G
Sbjct: 83 GREIF-PRLTVEENL----LTGLAALPRRSRKIPDEIYELFPVLKEM--LGRRGG----- 130
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVL 184
LSGG++++L+ A L+T P LLL DEPT G+ S K I R++R L ++ +L
Sbjct: 131 ---DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP-SIIKDIGRVIRRLRAEGGMAIL 186
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 7e-15
Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 20/185 (10%)
Query: 14 TLVAIMGASGAGKSTLLAAL--------SQRLPDDCIIDG-DIRVNG-KPVEGKFRSACG 63
++ AI+G SG GKST+L ++ S R+ ++D DI G PV R G
Sbjct: 31 SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV--SIRRRVG 88
Query: 64 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
++Q P++++Y+++ +A KL+ RV + ++ S L + L + R+ S++
Sbjct: 89 MVFQKPNPFPAMSIYDNV--IAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNA 146
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ LSGG+++RL A + P ++L DEP + LD S K+ ++ EL K T+
Sbjct: 147 ME----LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK--EKYTI 200
Query: 184 LCTIH 188
+ H
Sbjct: 201 IIVTH 205
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 8e-15
Identities = 65/216 (30%), Positives = 88/216 (40%), Gaps = 36/216 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH-DLF 71
G +AI+G +GAGKSTLL L+ L G ++V G+ V+ G+ QH D
Sbjct: 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLS---GTVKV-GETVK------IGYFDQHRDEL 397
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQKVVL 130
P TV E L + + L G Q +G VL
Sbjct: 398 DPDKTVLEEL---------SEGFPDGDEQEVRAYLGRFGFTGEDQEKPVG--------VL 440
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGGE+ RL A LL P LLL DEPT LD S + + E + TVL H
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES----LEALEEALLDFEGTVLLVSHDR 496
Query: 191 SSELID-MFDKIILLADSRTAFIGSKDAALAFLESQ 225
+D + +I L+ D F G + L + +
Sbjct: 497 --YFLDRVATRIWLVEDKVEEFEGGYEDYLEQKKER 530
|
Length = 530 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 8e-15
Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 14/168 (8%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFMYQH-D 69
+ A++GASG GKST L ++ IDG + + GK V+ + R G ++Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAY-QRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
+F S +YE++ + KL +K + AL+ L ++GL ++ +++
Sbjct: 90 VFVKS--IYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALA--- 142
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
LSGG+++RL A L P LLL DEPT+ LD S+ + +++EL+
Sbjct: 143 -LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS 189
|
Length = 246 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 8e-15
Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 27/205 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVE-------GKFRSACGF 64
G V + G SGAGKSTLL + P G I VNG + R G
Sbjct: 28 GEFVFLTGPSGAGKSTLLKLIYGEERPTR----GKILVNGHDLSRLKGREIPFLRRQIGV 83
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
++Q P TVYE++ L + + + +R ++ +L +GL +
Sbjct: 84 VFQDFRLLPDRTVYENVAL-PLRVIGKPPREIRR--RVSEVLDLVGLKHKARA------- 133
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGGE++R++ A ++ PA+LL DEPT LD + +++R+ E+ ++ TVL
Sbjct: 134 -LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI-NRLGTTVL 191
Query: 185 CTIHQPSSELIDMFDK-IILLADSR 208
H EL++ ++ L D R
Sbjct: 192 MATH--DLELVNRMRHRVLALEDGR 214
|
Length = 223 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 9e-15
Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 22/225 (9%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KF 58
L G + S G +AI+G SG+GKSTL + P G +R++G ++ F
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPP---TSGSVRLDGADLKQWDRETF 390
Query: 59 RSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
G++ Q +LF TV E++ ++ ++A ++ L+ L L + T
Sbjct: 391 GKHIGYLPQDVELFPG--TVAENIARFGENADPEKIIEAAKLAGVHELI--LRLPDGYDT 446
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
IG T LSGG+R+R++ A L DP L++ DEP + LD L ++ L
Sbjct: 447 VIGPGGAT----LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL-K 501
Query: 178 QRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 222
R TV+ H+PS L+ DKI++L D R A G +D LA L
Sbjct: 502 ARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLAKL 544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 1e-14
Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 22/198 (11%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF---RSACGFMYQHDLF 71
+ A +G +GAGK+T L+ L+ LP G + V GK +E R + G QH++
Sbjct: 958 ITAFLGHNGAGKTTTLSILTGLLPP---TSGTVLVGGKDIETNLDAVRQSLGMCPQHNIL 1014
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIAL-INSLLIELGLMNSQHTRIGSSSITQKVVL 130
LTV EH+ F A LK ++++ L + ++L + GL + ++ L
Sbjct: 1015 FHHLTVAEHILFYAQLK----GRSWEEAQLEMEAMLEDTGLHHKRNEEAQD--------L 1062
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGG +++LS A + D +++ DEPT+G+D +S + ++ + S R ++ T H
Sbjct: 1063 SGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGR-TIIMSTHHMD 1121
Query: 191 SSELIDMFDKIILLADSR 208
++L+ D+I +++ R
Sbjct: 1122 EADLLG--DRIAIISQGR 1137
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 1e-14
Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 36/199 (18%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV--EGKF-------RSAC 62
G +VA++G SG+GKSTLL LS + D I + G+ V EG+ R+
Sbjct: 29 HGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANT 88
Query: 63 GFMYQHDLFSPSLTVYEHLYFMAL------------LKLDRRVKAYQRIALINSLLIELG 110
G+++Q L+V E++ AL +++ +A Q L +G
Sbjct: 89 GYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQA-------LTRVG 141
Query: 111 LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170
+++ H R+ + LSGG+++R++ A L+ ++L DEP LD SA ++
Sbjct: 142 MVHFAHQRVST--------LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193
Query: 171 MMRELTSQRKKTVLCTIHQ 189
+R++ TV+ T+HQ
Sbjct: 194 TLRDINQNDGITVVVTLHQ 212
|
Length = 262 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-14
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 45/212 (21%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMY 66
G +VA++G +GAGKSTL + L G++ + G+P++ + R G ++
Sbjct: 28 GEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVF 84
Query: 67 QH---DLFSPSLTVYEHLYFMAL-LKLD-----RRVKAYQRIALINSLLIELGLMNSQHT 117
Q+ LF+P TV E + F L L L +RVK AL
Sbjct: 85 QNPDDQLFAP--TVEEDVAFGPLNLGLSKEEVEKRVKE----AL---------------K 123
Query: 118 RIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+G K LSGG++KR++ A L P +++ DEPT+GLD AS++++++ +L
Sbjct: 124 AVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL 183
Query: 176 TSQRKKTVLCTIHQPSSELIDMF-DKIILLAD 206
++ T++ + H +L+ ++ DK+ +++D
Sbjct: 184 -NKEGITIIISTHD--VDLVPVYADKVYVMSD 212
|
Length = 275 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-14
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 58/205 (28%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQHD 69
G +A++G SG+GKSTLL L+ L G+I ++G PV E S + Q
Sbjct: 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSLISVLNQRP 84
Query: 70 -LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
LF +L N+ R
Sbjct: 85 YLFDTTL------------------------------------RNNLGRR---------- 98
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
SGGER+RL+ A LL D ++L DEPT GLD + +L+ ++ E+ + KT++ H
Sbjct: 99 -FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITH 155
Query: 189 QPSSELIDMFDKIILLADSRTAFIG 213
+ I+ DKI+ L + + G
Sbjct: 156 HLTG--IEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-14
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD---CIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G V ++G++GAGKSTLL A++ L +IDG + V K V + + ++Q
Sbjct: 32 GDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDG-VDVTKKSVAKR-ANLLARVFQDP 89
Query: 70 L--FSPSLTVYEHLYFMALLKLDRR----VKAYQRIALINSLL--IELGLMNSQHTRIGS 121
L +P LT+ E+L +A + +R +R + L + LGL N RIG
Sbjct: 90 LAGTAPELTIEENL-ALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG- 147
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
+LSGG+R+ LS L P +LL DE T LD +A ++ + ++ + K
Sbjct: 148 -------LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200
Query: 182 TVLCTIH 188
T L H
Sbjct: 201 TTLMVTH 207
|
Length = 263 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-14
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 14/223 (6%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK-----PVEGKFRSACGFMY 66
G + AIMG +G+GKSTL + P + +G+I +G+ + + R+ +
Sbjct: 29 EGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVTEGEILFDGEDILELSPDERARAGIFLAF 87
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q+ + P +T + L + R + I + LGL R +
Sbjct: 88 QYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER----YVN- 142
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
SGGE+KR LL +P L + DEP +GLD + + + L + + ++ T
Sbjct: 143 -EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIIT 201
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPC 229
+Q + I DK+ +L D R G + A LE +GY
Sbjct: 202 HYQRLLDYIKP-DKVHVLYDGRIVKSGDPELAE-ELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-14
Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 19/178 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQHD 69
G + +G +GAGK+T + L+ L G RV G V K R + G + Q+
Sbjct: 19 GEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYA 75
Query: 70 LFSPSLTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
LT E+L M L L + A +R LL L + +G+
Sbjct: 76 SVDEDLTGRENLEMMGRLYGLPKDE-AEERAE---ELLELFELGEAADRPVGT------- 124
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
SGG R+RL A L+ P +L DEPTTGLD + + +R L + +L T
Sbjct: 125 -YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTT 181
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-14
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 15/181 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAA---LSQRLPDDCIIDG-DIRVNGKPVEGKFRSACGFMYQH 68
G + ++GASGAGKSTL+ L + I+DG D+ K R G ++QH
Sbjct: 31 GQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQH 90
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
S TV+ ++ L + + +++ LL +GL + + +
Sbjct: 91 FNLLSSRTVFGNVALPLELDNTPKDEIKRKV---TELLALVGLGDKHDSYPSN------- 140
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+++R++ A L ++P +LLCDE T+ LD + ++ +++E+ + T+L H
Sbjct: 141 -LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITH 199
Query: 189 Q 189
+
Sbjct: 200 E 200
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-14
Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 21/185 (11%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP---VEGKFRSACGFMYQ 67
+G + I G +GAGK+TLL L+ L D G++ G+P V + A ++
Sbjct: 26 NAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESYHQALLYLGH 82
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
LT E+L+F +R A I L ++GL + +G
Sbjct: 83 QPGIKTELTALENLHFW------QRFHGSGNAATIWEALAQVGLAGLEDLPVGQ------ 130
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LS G+++R++ A L+ L + DEP T LD + L +M + VL T
Sbjct: 131 --LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA-AQGGIVLLTT 187
Query: 188 HQPSS 192
HQP
Sbjct: 188 HQPLP 192
|
Length = 209 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-14
Identities = 59/214 (27%), Positives = 111/214 (51%), Gaps = 27/214 (12%)
Query: 12 SGTLVAIMGASGAGKST-------LLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGF 64
SG +V ++G +GAGK+T L+ S ++ ++D D + P+ + R G+
Sbjct: 29 SGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI----LLD-DEDITKLPMHKRARLGIGY 83
Query: 65 MYQ-HDLFSPSLTVYEHLYFMALLKL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
+ Q +F LTV +++ MA+L++ ++ +K +R +++LL E + + + ++ S
Sbjct: 84 LPQEASIFR-KLTVEDNI--MAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYS- 139
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGGER+R+ A L +P +L DEP G+D + + R+++ L R
Sbjct: 140 -------LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIG 191
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
VL T H E +D+ D+ +++D + GS +
Sbjct: 192 VLITDHN-VRETLDICDRAYIISDGKVLAEGSPE 224
|
Length = 243 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 3e-14
Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 24/206 (11%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVE--GKFRSACGFMYQ 67
G ++++G SG GKSTLL + L+Q P G + + GK + G R ++Q
Sbjct: 11 GEFISLIGHSGCGKSTLLNLISGLAQ--PTS----GGVILEGKQITEPGPDRMV---VFQ 61
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
+ P LTV E++ +A+ ++ + +R A++ + +GL + R G
Sbjct: 62 NYSLLPWLTVRENIA-LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ------ 114
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG ++R++ A L P +LL DEP LD+ + L + ++ + + TVL
Sbjct: 115 --LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVT 172
Query: 188 HQPSSELIDMFDKIILLADSRTAFIG 213
H L+ + D++++L + A IG
Sbjct: 173 HDVDEALL-LSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-14
Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 33/217 (15%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK-----------PVEGKFRSACGF 64
AI G SG+GK+TL+ ++ D +G+I +NG+ P E + G+
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPE---KRRIGY 79
Query: 65 MYQHDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
++Q P L+V +L Y M +R + +R ++ LG+ + G
Sbjct: 80 VFQEARLFPHLSVRGNLRYGM------KRARPSERRISFERVIELLGIGHLLGRLPGR-- 131
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGE++R++ LL+ P LLL DEP LD +++ + L ++ +
Sbjct: 132 ------LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
L H E++ + D++++L D R A G A
Sbjct: 186 LYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 4e-14
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 31/176 (17%)
Query: 16 VAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVEGK------FRSACGFMYQ 67
A++G SG GKSTLL +L++ L I+G + +G+ + K R G ++Q
Sbjct: 30 TALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQ 89
Query: 68 HDLFSP-SLTVYEHLYFMALLK-------LDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
+P +++Y+++ + L LD V+ L + L + R+
Sbjct: 90 K--PNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEE---------SLKKAALWDEVKDRL 138
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
S++ LSGG+++RL A L +P +LL DEPT+ LD + K+ +++EL
Sbjct: 139 HDSALG----LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL 190
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 6e-14
Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-------GKFRSACGFM 65
G + I+G SG+GKSTL L P G +R++G + G+ G++
Sbjct: 362 GEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDGADLRQWDREQLGRH---IGYL 415
Query: 66 YQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
Q +LF T+ E++ +V R+A ++ L+ L L TRIG
Sbjct: 416 PQDVELFDG--TIAENIARFGEEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGEGGA 471
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
T LSGG+R+R++ A L DP L++ DEP + LDS + L + R TV+
Sbjct: 472 T----LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA-KARGGTVV 526
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+PS + DKI++L D R A G ++ LA
Sbjct: 527 VIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 7e-14
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 24/216 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDC----IIDGDIRVNGKPVEGKFRSACGFMYQ 67
SG +V ++G +GAGK+T + +P D I D DI + P+ + R G++ Q
Sbjct: 28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISL--LPLHARARRGIGYLPQ 85
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
L+VY++L MA+L++ + A QR N L+ E + +H R S+ Q
Sbjct: 86 EASIFRRLSVYDNL--MAVLQIRDDLSAEQREDRANELMEEF---HIEHLR---DSMGQS 137
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA---SKLIRMMRELTSQRKKTVL 184
LSGGER+R+ A L +P +L DEP G+D S ++I +R+ VL
Sbjct: 138 --LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD----SGLGVL 191
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
T H E + + ++ +++ G+ L
Sbjct: 192 ITDHN-VRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 7e-14
Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 49/219 (22%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMY 66
G V ++G SG GK+T L A L + G I + G+ V K R ++
Sbjct: 26 GEFVVLLGPSGCGKTTTLRMIAGLEE------PTSGRIYIGGRDVTDLPPKDRDI-AMVF 78
Query: 67 QHDLFSPSLTVYEHLYFMALLKL--------DRRVKAYQRIALINSLLIELGLMNSQHTR 118
Q+ P +TVY+++ F LKL D RV+ + I LL + +
Sbjct: 79 QNYALYPHMTVYDNIAFG--LKLRKVPKDEIDERVREVAELLQIEHLL-------DRKPK 129
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR----E 174
LSGG+R+R++ ++ +P + L DEP + LD +KL MR
Sbjct: 130 ----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD----AKLRVQMRAELKR 175
Query: 175 LTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213
L + T + H E + M D+I ++ D + IG
Sbjct: 176 LQQRLGTTTIYVTHD-QVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 7e-14
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 14 TLVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
T+ A+MG SG+GKSTLL ++ L + + G++ ++G+ + + R ++Q
Sbjct: 30 TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQ 89
Query: 68 HDLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSIT 125
P+L+++E++ AL LKL+R VK+ + + + L + L + R+ + +
Sbjct: 90 IPNPIPNLSIFENV---ALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGK 146
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGG+++RL A L P +LL DEPT LD + +K+ + EL ++ T++
Sbjct: 147 ----LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL--KKDMTIVL 200
Query: 186 TIHQP 190
H P
Sbjct: 201 VTHFP 205
|
Length = 250 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-13
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 31/220 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPV----EGKFRSACGFM 65
G + ++G SG+GK+T + ++ RL P G+I ++G+ + + R G++
Sbjct: 26 KGEFLVLIGPSGSGKTTTMKMIN-RLIEPTS----GEIFIDGEDIREQDPVELRRKIGYV 80
Query: 66 YQH-DLFSPSLTVYEHLYFM-ALLKLDR---RVKAYQRIALINSLLIELGLMNSQHTRIG 120
Q LF P +TV E++ + LLK + R +A + +AL+ L + R
Sbjct: 81 IQQIGLF-PHMTVEENIALVPKLLKWPKEKIRERADELLALVG--LDPAEFAD----RYP 133
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGG+++R+ A L DP LLL DEP LD + +L + L +
Sbjct: 134 HE-------LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG 186
Query: 181 KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
KT++ H E + D+I ++ + +G+ D L
Sbjct: 187 KTIVFVTHD-IDEAFRLADRIAIMKNGEIVQVGTPDEILR 225
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-13
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 24/182 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQH 68
+G + + G +G+GK+TLL L+ P G + +NG P+ ++
Sbjct: 25 AGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHA 81
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
+L+V E+L F D + L +GL + +
Sbjct: 82 PGIKTTLSVLENLRFWHADHSD---------EQVEEALARVGLNGFEDRPVAQ------- 125
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LS G+++R++ A LL+ L + DEPTT LD ++ M R V+ T H
Sbjct: 126 -LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC-ARGGMVVLTTH 183
Query: 189 QP 190
Q
Sbjct: 184 QD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-13
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVEG-KFRS---ACGFMYQ 67
G ++A++G SG+GKS A+ L P G+I ++G+P+ R A
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNP 71
Query: 68 HDLFSPSLTVYEHLY--FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
F+P T+ H +L KL ++ +A LI L +GL + + +
Sbjct: 72 RTAFNPLFTMGNHAIETLRSLGKLSKQARA-----LILEALEAVGLPDPE--EVLKKYPF 124
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
Q LSGG +R+ A LL +P L+ DEPTT LD + +++++++REL +L
Sbjct: 125 Q---LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILL 181
Query: 186 TIH 188
H
Sbjct: 182 ITH 184
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-13
Identities = 66/214 (30%), Positives = 108/214 (50%), Gaps = 27/214 (12%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFM 65
SG +VA++G SG+GK+TLL A L + G IR +G V + R GF+
Sbjct: 27 SGQMVALLGPSGSGKTTLLRIIAGLEHQ------TSGHIRFHGTDVSRLHARDRKV-GFV 79
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQR--IALINSLLIELGLMNSQHTRIGSSS 123
+QH +TV++++ F L L RR +R A I + + +L M Q +
Sbjct: 80 FQHYALFRHMTVFDNIAF-GLTVLPRR----ERPNAAAIKAKVTQLLEM-VQLAHLADRY 133
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT- 182
Q LSGG+++R++ A L +P +LL DEP LD+ +L R +R+L + K T
Sbjct: 134 PAQ---LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTS 190
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
V T Q E +++ D++++++ G+ D
Sbjct: 191 VFVTHDQ--EEAMEVADRVVVMSQGNIEQAGTPD 222
|
Length = 353 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 64/213 (30%), Positives = 104/213 (48%), Gaps = 20/213 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL--PD--DCIIDGDIRVNGKPVEGKFRSACGFMYQH 68
G + I+G SG+GKSTL L QRL P ++DG P R G + Q
Sbjct: 483 GEFIGIVGPSGSGKSTL-TKLLQRLYTPQHGQVLVDGVDLAIADPAW--LRRQMGVVLQE 539
Query: 69 D-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
+ LFS S + +++ V ++A + + EL +T +G +
Sbjct: 540 NVLFSRS--IRDNIALCNPGAPFEHVIHAAKLAGAHDFISEL--PQGYNTEVGE----KG 591
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+R++ A L+ +P +L+ DE T+ LD S + ++R MRE+ R +TV+
Sbjct: 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIA 649
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ + D+II+L + A G + LA
Sbjct: 650 HRLST--VRACDRIIVLEKGQIAESGRHEELLA 680
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 2e-13
Identities = 51/192 (26%), Positives = 93/192 (48%), Gaps = 30/192 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFR-SACGFMYQHDL 70
G++ A++G +G+GKSTL AL + + G I + G+P + + ++ Q +
Sbjct: 32 GGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKNLVAYVPQSEE 88
Query: 71 FSPSLTV----------YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
S V Y H+ ++ RR K R ++ + L + ++ +H +IG
Sbjct: 89 VDWSFPVLVEDVVMMGRYGHMGWL------RRAKKRDR-QIVTAALARVDMVEFRHRQIG 141
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGG++KR+ A + ++L DEP TG+D + +++I ++REL +
Sbjct: 142 E--------LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-G 192
Query: 181 KTVLCTIHQPSS 192
KT+L + H S
Sbjct: 193 KTMLVSTHNLGS 204
|
Length = 272 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-13
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 30/219 (13%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFMYQH- 68
+ +A++G +GAGKSTL + L G + + G+P+ + R G ++Q+
Sbjct: 31 SRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNP 87
Query: 69 --DLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+FSP TV + + F + L LD A++ ++S L LGL R+
Sbjct: 88 DDQIFSP--TVEQDIAFGPINLGLDEETVAHR----VSSALHMLGL-EELRDRVPHH--- 137
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGGE+KR++ A + +P +L+ DEPT GLD +LI + +L TV+
Sbjct: 138 ----LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIF 193
Query: 186 TIHQPSSELI-DMFDKIILLADSRTAFIGSKDAALAFLE 223
+ HQ +L+ +M D I ++ R + FL+
Sbjct: 194 STHQ--LDLVPEMADYIYVMDKGR--IVAYGTVEEIFLQ 228
|
Length = 277 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-13
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 22/182 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFMYQH 68
+G + + G +G GK+TLL L+ L D G++R NG + + ++
Sbjct: 25 AGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHL 81
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
P L+ E+L+F A + + L +GL +
Sbjct: 82 PGLKPELSALENLHFWAAIHGGAQRTIED-------ALAAVGLTGFEDLPAAQ------- 127
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LS G+++RL+ A L+ L + DEPTT LD + L ++R R VL T H
Sbjct: 128 -LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL-ARGGIVLLTTH 185
Query: 189 QP 190
Q
Sbjct: 186 QD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 3e-13
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 30/186 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA-------CGFM 65
G + A++G +GAGKSTL+ L D G+IRV+GK V +S G +
Sbjct: 30 GEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVR--IKSPRDAIRLGIGMV 84
Query: 66 YQHDLFSPSLTVYEHLYF----MALLKLDRRVKAYQRIA-LINSLLIELGLMNSQHTRIG 120
+QH + P+LTV E++ +DRR +A RI L + + ++
Sbjct: 85 HQHFMLVPTLTVAENIILGLEPSKGGLIDRR-QARARIKELSERYGLPVDP----DAKVA 139
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LS GE++R+ L LL+ DEPT L A +L ++R L ++ K
Sbjct: 140 D--------LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGK 191
Query: 181 KTVLCT 186
+ T
Sbjct: 192 TIIFIT 197
|
Length = 501 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-13
Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 31/191 (16%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCI---IDGDIRVNGKPVEGKFRSAC------ 62
+G +VAI+GASG+GKSTL+ L C+ G RV G+ V A
Sbjct: 33 AGEMVAIVGASGSGKSTLMNILG------CLDKPTSGTYRVAGQDVATLDADALAQLRRE 86
Query: 63 --GFMYQHDLFSPSLTVYEHLYFMALLK-LDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
GF++Q LT +++ A+ L+R+ QR+ LL LGL + +
Sbjct: 87 HFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERK----QRLLRAQELLQRLGLEDRVEYQP 142
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
LSGG+++R+S A L+ ++L DEPT LDS S +++ ++ +L R
Sbjct: 143 SQ--------LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQL-RDR 193
Query: 180 KKTVLCTIHQP 190
TV+ H P
Sbjct: 194 GHTVIIVTHDP 204
|
Length = 648 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 4e-13
Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 27/217 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPD----DCIIDGDIRVNGKPVE--GKFRSACGFMY 66
G + IMG SG+GKST + L+ RL + IDG+ + PVE R G ++
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLN-RLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVF 77
Query: 67 QHDLFSPSLTVYEHL-YFMALLKLD---RRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
Q P +T+ ++ LL R+ KA + + L+ GL +H
Sbjct: 78 QQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLV-------GLEEYEHRYPDE- 129
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGG ++R+ A L +P +LL DE + LD + +++L + +KT
Sbjct: 130 -------LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT 182
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219
++ H E I + D+I+++ +G+ D L
Sbjct: 183 IVFITHD-LDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-13
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 25/196 (12%)
Query: 6 LTGAAL---SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-------E 55
LTG L G +A++G SG+GKSTLLA L+ L D G++ + G+P+
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAG-LDDGS--SGEVSLVGQPLHQMDEEAR 82
Query: 56 GKFRSA-CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS 114
K R+ GF++Q + P+L E++ ALL+ + ++ +LL +LGL
Sbjct: 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK---ALLEQLGL--- 136
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
G LSGGE++R++ A P +L DEPT LD + K+ ++
Sbjct: 137 -----GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191
Query: 175 LTSQRKKTVLCTIHQP 190
L + T++ H
Sbjct: 192 LNREHGTTLILVTHDL 207
|
Length = 228 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 5e-13
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 35/192 (18%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVE------GKFRSA 61
AA G ++A++GA+GAGKSTLL L+ L P G + ++G+P++ + R
Sbjct: 14 AAERGEVLALLGANGAGKSTLLLHLNGLLRPQS----GAVLIDGEPLDYSRKGLLERRQR 69
Query: 62 CGFMYQH---DLFSPSLTVYEHLYF--MALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
G ++Q LF+ V + + F + L + V+ R AL
Sbjct: 70 VGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEVERRVREAL--------------- 112
Query: 117 TRIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
T +G+S + ++ LSGGE+KR++ A + P +LL DEPT GLD +++ ++R
Sbjct: 113 TAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 175 LTSQRKKTVLCT 186
L ++ V+ T
Sbjct: 173 LRAEGMTVVIST 184
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 6e-13
Identities = 68/215 (31%), Positives = 107/215 (49%), Gaps = 25/215 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMYQ 67
G VA++G +G GKSTLL L+ P G+I +NG+P+ E R A + Q
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQ----GEILLNGQPIADYSEAALRQAISVVSQ 421
Query: 68 H-DLFSPSLTVYEHLYFMALLKLDRR-VKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
LFS +L ++L A D ++ Q++ L L + GL + +G
Sbjct: 422 RVHLFSATLR--DNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGL----NAWLGEGGRQ 475
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGGE++RL A LL D LLL DEPT GLD+ + +++ ++ E + KTVL
Sbjct: 476 ----LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLM 529
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ + ++ FD+I ++ + + G+ LA
Sbjct: 530 ITHRLT--GLEQFDRICVMDNGQIIEQGTHQELLA 562
|
Length = 574 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 6e-13
Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 36/222 (16%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGK-----PVEG 56
L +LS G V ++G SG GK+TLL ++ G I G+ P +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA----GTIYQGGRDITRLPPQ- 74
Query: 57 KFRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ 115
+ G ++Q + LF P+LTV +++ + LK +R + + + LL +GL S+
Sbjct: 75 --KRDYGIVFQSYALF-PNLTVADNIAYG--LK-NRGMGRAEVAERVAELLDLVGLPGSE 128
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
G LSGG+++R++ A L T P LLL DEP + LD+ L +R+L
Sbjct: 129 RKYPGQ--------LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180
Query: 176 TSQRK---KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
QR+ T++ T Q E + M D+I+++ +G+
Sbjct: 181 --QRRLGVTTIMVTHDQ--EEALSMADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 6e-13
Identities = 50/205 (24%), Positives = 77/205 (37%), Gaps = 67/205 (32%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMYQ 67
G +AI+G SG+GKSTL + L G +R++G + + G++ Q
Sbjct: 27 PGESLAIIGPSGSGKSTLARLILGLLRP---TSGRVRLDGADISQWDPNELGDHVGYLPQ 83
Query: 68 HD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
D LFS SI +
Sbjct: 84 DDELFS-------------------------------------------------GSIAE 94
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL---IRMMRELTSQRKKTV 183
+ LSGG+R+RL A L +P +L+ DEP + LD L I ++ T
Sbjct: 95 NI-LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA----AGATR 149
Query: 184 LCTIHQPSSELIDMFDKIILLADSR 208
+ H+P E + D+I++L D R
Sbjct: 150 IVIAHRP--ETLASADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 7e-13
Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 40/198 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDC---IIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G + ++G +GAGKSTLL L+ L D +RV G++ Q
Sbjct: 29 GERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRV-------------GYLSQEP 75
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRI--ALINSLLIELGLMNSQHTRIGSSSITQK 127
P TV +++ +L + + L + L + + + ++ +
Sbjct: 76 PLDPEKTVLDYV-IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR 134
Query: 128 VV-----------------LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170
LSGG R+R++ A LL +P LLL DEPT LD S L
Sbjct: 135 AEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLED 194
Query: 171 MMRELTSQRKKTVLCTIH 188
++ TV+ H
Sbjct: 195 YLKR----YPGTVIVVSH 208
|
Length = 530 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-13
Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 20/201 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G VAI+G +GAGK+TL+ L + G I ++G + RS G + Q
Sbjct: 29 GETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKSLRSMIGVVLQD 85
Query: 69 D-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
LFS T+ E++ D V + A + +++L N T +G +
Sbjct: 86 TFLFSG--TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKL--PNGYDTVLGENGGN-- 139
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LS GER+ L+ A +L DP +L+ DE T+ +D+ + + + +L + +T +
Sbjct: 140 --LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL--MKGRTSIIIA 195
Query: 188 HQPSSELIDMFDKIILLADSR 208
H+ S+ I DKI++L D +
Sbjct: 196 HRLST--IKNADKILVLDDGK 214
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-12
Identities = 57/193 (29%), Positives = 102/193 (52%), Gaps = 28/193 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALS-QRLPDDCIID-GDIRVNG-KPVEG------KFRSAC 62
G +VAI+G SG+GK+TLL ++ P+ I GDI ++ + + + R
Sbjct: 28 PGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHV 87
Query: 63 GFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQR---IALINSLLIELGLMNSQHTR 118
GF++Q+ +LF P TV E++ ++ VK + A LL ++GL +
Sbjct: 88 GFVFQNFNLF-PHRTVLENIIEGPVI-----VKGEPKEEATARARELLAKVGLAGKE--- 138
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+S ++ LSGG+++R++ A L P ++L DEPT+ LD +++ +R+L +Q
Sbjct: 139 ---TSYPRR--LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL-AQ 192
Query: 179 RKKTVLCTIHQPS 191
K+T++ H+ S
Sbjct: 193 EKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-12
Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 11/192 (5%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G L+ ++G +GAGK+TLL A+ +P G ++V G GK G++ Q F+
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGAS-PGKGWRHIGYVPQRHEFA 61
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
+ + + + +R + + + L T + + + LSG
Sbjct: 62 WDFPI--SVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE---LSG 116
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G+R+R+ A L T P++LL DEP TGLD + L + EL + +L T H +
Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL-AGAGTAILMTTHD-LA 174
Query: 193 ELIDMFDKIILL 204
+ + D+++LL
Sbjct: 175 QAMATCDRVVLL 186
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-12
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 28/218 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
G VA++G+SG GKST+++ L +R D G+I ++G + RS G + Q
Sbjct: 28 PGKTVALVGSSGCGKSTVVS-LLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQ 84
Query: 68 H-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
LF T+ E++ + D V+ + A I+ ++ L + T +G +Q
Sbjct: 85 EPVLFD--GTIAENIRYGKPDATDEEVEEAAKKANIHDFIM--SLPDGYDTLVGERG-SQ 139
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS----ASKLIRMMRELTSQRKKT 182
LSGG+++R++ A LL +P +LL DE T+ LD+ S L R M+ +T
Sbjct: 140 ---LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKG------RT 190
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
+ H+ S+ I D I +L + + G+ D +A
Sbjct: 191 TIVIAHRLST--IRNADLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-12
Identities = 48/204 (23%), Positives = 99/204 (48%), Gaps = 20/204 (9%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G + ++G +GAGK+T + L +G+I NG P+ + ++ G++ +
Sbjct: 27 PGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNRIGYLPEERGL 83
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
P +TV + L ++A LK + + +++ + L L ++ + +I LS
Sbjct: 84 YPKMTVEDQLKYLAELKGMPKAEIQKKL---QAWLERLEIVGKKTKKIKE--------LS 132
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
G ++++ F + ++ +P LL+ DEP +GLD + L + EL + T++ + H+
Sbjct: 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL-KEEGATIIFSSHRME 191
Query: 192 --SELIDMFDKIILLADSRTAFIG 213
EL D++++L +T G
Sbjct: 192 HVEELC---DRLLMLKKGQTVLYG 212
|
Length = 300 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 39/220 (17%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
G + +I+G +GAGKSTLL+ +S+ L D G+I ++G + + + Q
Sbjct: 26 KGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQ 82
Query: 68 HDLFSPSLTVYEHLYFM-------ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
+ + LTV + + F L K DRR +IN + L L + +
Sbjct: 83 ENHINSRLTVRDLVGFGRFPYSQGRLTKEDRR--------IINEAIEYLHLEDLSDRYLD 134
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGG+R+R A L D +L DEP LD + ++++++R L +
Sbjct: 135 E--------LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELG 186
Query: 181 KTVLCTIHQPSSELIDM----FDKIILLADSRTAFIGSKD 216
KT++ +H I+ D I+ L + + GS D
Sbjct: 187 KTIVVVLHD-----INFASCYSDHIVALKNGKVVKQGSPD 221
|
Length = 252 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-12
Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 35/202 (17%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNG---------- 51
L G +L G +++I+G+SG+GKST L ++ P G IRVNG
Sbjct: 22 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA----GSIRVNGEEIRLKRDKD 77
Query: 52 ---KPVEGK----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 104
KP + + R+ G ++QH +TV E++ + L V + I
Sbjct: 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEK 135
Query: 105 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
L ++G+ LSGG+++R++ A L +P ++L DEPT+ LD
Sbjct: 136 YLAKVGIAEKADA--------YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPEL 187
Query: 165 ASKLIRMMRELTSQRKKTVLCT 186
+++++M++L + + V+ T
Sbjct: 188 VGEVLKVMQDLAEEGRTMVVVT 209
|
Length = 256 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-12
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-GKFRSACGFMYQHDL 70
+G + + G +G+GK+TLL ++ LP G I+++G ++ AC ++ +
Sbjct: 27 AGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEACHYLGHRNA 83
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
P+LTV E+L F A + + + GL H G L
Sbjct: 84 MKPALTVAENLEFWAAFLGGEELDIAAALEAV-------GLAPLAHLPFG--------YL 128
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
S G+++R++ A L+++ + + DEPT LD+ + + ++R
Sbjct: 129 SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRA 172
|
Length = 207 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 3e-12
Identities = 55/218 (25%), Positives = 105/218 (48%), Gaps = 22/218 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEG------KFRSACGF 64
+ A++G SG GKST L L++ L I G++ + G+ + + R G
Sbjct: 31 NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGM 90
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSS 123
++Q P ++YE++ + L VK + + + L + + + + S+
Sbjct: 91 VFQQPNPFP-FSIYENVIYGLRLA---GVKDKAVLDEAVETSLKQAAIWDEVKDHLHESA 146
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
++ LSGG+++R+ A L P ++L DEPT+ LD S++++ M+ EL Q +
Sbjct: 147 LS----LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIIL 202
Query: 184 LC-TIHQPS--SELIDMF--DKIILLADSRTAFIGSKD 216
+ ++HQ S S+ F +I AD++ F+ K+
Sbjct: 203 VTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKE 240
|
Length = 252 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 41/206 (19%)
Query: 17 AIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGK-----------PVEGKFRSACGF 64
A+ G SG+GK++L+ ++ PD+ G I +NG+ P E + G+
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDE----GRIELNGRVLVDAEKGIFLPPE---KRRIGY 80
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL--INSLLIELGLMNSQHTRIGSS 122
++Q P TV +L + R + Q +AL I LL R +
Sbjct: 81 VFQDARLFPHYTVRGNLRYGM--WKSMRAQFDQLVALLGIEHLL----------DRYPGT 128
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGGE++R++ LLT P LLL DEP LD +++ + L +
Sbjct: 129 -------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIP 181
Query: 183 VLCTIHQPSSELIDMFDKIILLADSR 208
+L H E++ + D++++L + +
Sbjct: 182 ILYVSHSL-DEVLRLADRVVVLENGK 206
|
Length = 352 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-12
Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 34/180 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVEGK------FRSACGF 64
+ A++G SG GKSTLL L++ L ++G++ ++GK + R G
Sbjct: 33 NKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGM 92
Query: 65 MYQHDLFSPS---LTVYEHLYF------MALLKLDRRVKAYQRIALINSLLIELGLMNSQ 115
++Q P+ +++Y+++ + + +LD V++ + A L +
Sbjct: 93 VFQK----PNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKA---------ALWDEV 139
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
R+ S++ LSGG+++RL A L P +LL DEPT+ LD S K+ ++ EL
Sbjct: 140 KDRLHKSALG----LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL 195
|
Length = 253 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 3e-12
Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 17/180 (9%)
Query: 17 AIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQH 68
A++G SG GKSTLL ++ L C I GDI NG+ + R G ++Q
Sbjct: 36 ALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQR 95
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
P ++YE++ + + ++ K I + L L + R+ S+++
Sbjct: 96 PNPFPK-SIYENVAYGPRIHGEKNKKTLDTI--VEKSLKGAALWDEVKDRLHDSALS--- 149
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+++RL A L +P ++L DEP + LD + +K+ ++ +L +++ TV+ H
Sbjct: 150 -LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL--KKEYTVIIVTH 206
|
Length = 253 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-12
Identities = 50/191 (26%), Positives = 91/191 (47%), Gaps = 31/191 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEGK------FRSACGF 64
+ A++G SG GKST L L++ L I+G++ ++G+ + R G
Sbjct: 29 NQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGM 88
Query: 65 MYQHDLFSPSLTVYEHLYFMALL-------KLDRRVKAYQRIALINSLLIELGLMNSQHT 117
++Q P +++Y+++ + KLD V+ + A L +
Sbjct: 89 VFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGA---------ALWDEVKD 138
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
R+ S++ LSGG+++RL A L +P +LL DEPT+ LD S K+ +++EL
Sbjct: 139 RLKKSALG----LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-- 192
Query: 178 QRKKTVLCTIH 188
++ T++ H
Sbjct: 193 KKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 6e-12
Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 34/209 (16%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGKPVEG------KFRSACGFM 65
+ A++G SG+GKSTLL +++ R+ D + I G I NG + R G +
Sbjct: 33 ITALIGPSGSGKSTLLRSIN-RMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMV 91
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSI 124
+Q P +++YE++ + LK +K Q + + L + + R+ S++
Sbjct: 92 FQQPNPFP-MSIYENVVYGLRLK---GIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSAL 147
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+++R+ A L T P ++L DEPT+ LD SA K+ + L + T+L
Sbjct: 148 G----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL--KDDYTML 201
Query: 185 CTIH--QPSSELIDMFDKIILLADSRTAF 211
Q +S + D RT F
Sbjct: 202 LVTRSMQQASRISD-----------RTGF 219
|
Length = 252 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 7e-12
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 25/204 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
G VA++G SG+GKSTL+ + + PD G I ++G + R + Q
Sbjct: 358 GETVALVGRSGSGKSTLVNLIPRFYEPDS----GQILLDGHDLADYTLASLRRQVALVSQ 413
Query: 68 H-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSI 124
LF+ T+ ++ + + DR A AL + + L T IG +
Sbjct: 414 DVVLFND--TIANNIAYGRTEQADR---AEIERALAAAYAQDFVDKLPLGLDTPIGENG- 467
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
V+LSGG+R+RL+ A LL D +L+ DE T+ LD+ S + + L + +T L
Sbjct: 468 ---VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL--MQGRTTL 522
Query: 185 CTIHQPSSELIDMFDKIILLADSR 208
H+ S+ I+ D+I+++ D R
Sbjct: 523 VIAHRLST--IEKADRIVVMDDGR 544
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 7e-12
Identities = 60/187 (32%), Positives = 81/187 (43%), Gaps = 32/187 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGK-PVEGK---FRSACGFMYQ 67
G +V +GA+GAGKST L L+ L P G +RVNGK P + RS M Q
Sbjct: 50 GEIVGFLGANGAGKSTTLKMLTGLLLPTS----GKVRVNGKDPFRRREEYLRSIGLVMGQ 105
Query: 68 H-----DL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
DL SL V + +Y + + R+ I L +E L
Sbjct: 106 KLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEI-----LDLEGFLKWPVRK---- 156
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LS G+R R A LL P +L DEPT GLD + + + ++E +R+
Sbjct: 157 --------LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQA 208
Query: 182 TVLCTIH 188
TVL T H
Sbjct: 209 TVLLTTH 215
|
Length = 325 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 7e-12
Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 20/213 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G VA++G SGAGKSTL L R D G I ++G + + R+ + Q
Sbjct: 366 GETVALVGPSGAGKSTLFQLL-LRFYDPQ--SGRILLDGVDLRQLDPAELRARMALVPQD 422
Query: 69 D-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
LF+ S V E++ + D V+A R A + + L T +G +T
Sbjct: 423 PVLFAAS--VMENIRYGRPDATDEEVEAAARAAHAHEFI--SALPEGYDTYLGERGVT-- 476
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+R++ A +L D +LL DE T+ LD+ S + + + L R T L
Sbjct: 477 --LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGR--TTLIIA 532
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ ++ + D+I+++ R G+ +A
Sbjct: 533 HRLAT--VLKADRIVVMDQGRIVAQGTHAELIA 563
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 7e-12
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 23/171 (13%)
Query: 13 GTLVAIMGASGAGKSTLLA---ALSQRLPDDCIIDGDIRVNGKPV-EGKFRSACGFMYQH 68
G +V I+G SG+GKSTLL L + D I+DG ++VN V E R G ++Q
Sbjct: 27 GEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG-LKVNDPKVDERLIRQEAGMVFQQ 85
Query: 69 -DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA---LINSLLIELGLMNSQHTRIGSSSI 124
LF P LT E++ F RV+ + LL ++GL H
Sbjct: 86 FYLF-PHLTALENVMFGP-----LRVRGASKEEAEKQARELLAKVGLAERAHHYPSE--- 136
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
LSGG+++R++ A L P L+L DEPT+ LD +++++M++L
Sbjct: 137 -----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL 182
|
Length = 240 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 8e-12
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 27/204 (13%)
Query: 18 IMGASGAGKSTLLAALS--QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
++G SG GK+TLL L+ ++ I+ V P ++Q P +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH---LRHINMVFQSYALFPHM 57
Query: 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 135
TV E++ F LK+ R+V + + L L+ Q Q LSGG++
Sbjct: 58 TVEENVAFG--LKM-RKVPRAEIKPRVLEAL---RLV--QLEEFADRKPHQ---LSGGQQ 106
Query: 136 KRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMREL-TSQRK---KTVLCTIHQP 190
+R++ A L+ P +LL DEP + LD KL +M EL T Q + V T Q
Sbjct: 107 QRVALARALVFKPKILLLDEPLSALD----KKLRDQMQLELKTIQEQLGITFVFVTHDQ- 161
Query: 191 SSELIDMFDKIILLADSRTAFIGS 214
E + M D+I ++ + A IG+
Sbjct: 162 -EEAMTMSDRIAIMRKGKIAQIGT 184
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 8e-12
Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 29/188 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
+G + A++G +G GKSTLL ++ L G + + KP+ + + Q
Sbjct: 27 TGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSRQLARRLALLPQ 83
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT-----RIGSS 122
H L +TV R + AY R + SL L ++ + +
Sbjct: 84 HHLTPEGITV-------------RELVAYGR-SPWLSLWGRLSAEDNARVNQAMEQTRIN 129
Query: 123 SITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
+ + + LSGG+R+R A L D ++L DEPTT LD +L+R+MREL + +
Sbjct: 130 HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL-NTQG 188
Query: 181 KTVLCTIH 188
KTV+ +H
Sbjct: 189 KTVVTVLH 196
|
Length = 255 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 9e-12
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 22/212 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHD 69
+G L+A++G SG GK+TLL A++ + + G I + + + + ++Q+
Sbjct: 30 AGELLALIGKSGCGKTTLLRAIAGFVKAAGL-TGRIAIADRDLTHAPPHKRGLALLFQNY 88
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
P L V +++ F L+ + KA I + + L + Q
Sbjct: 89 ALFPHLKVEDNVAFG--LRAQKMPKA-----DIAERVAD-ALKLVGLGDAAAHLPAQ--- 137
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDS----FSASKLIRMMRELTSQRKKTVLC 185
LSGG ++R++ A + +P +LL DEP + LD+ ++ + EL T+LC
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL---TILC 194
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217
H L + DK ++ D R A G A
Sbjct: 195 VTHDQDDALT-LADKAGIMKDGRLAAHGEPQA 225
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-12
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 28/220 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPVEGKFRSAC----GFMY 66
G ++AI+G +GAGKSTLL ALS + PD G++ +NG P+ +
Sbjct: 26 PGEVLAILGPNGAGKSTLLKALSGELSPDS----GEVTLNGVPLNSWPPEELARHRAVLP 81
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q+ + TV E ++++ R R + + L + + +
Sbjct: 82 QNSSLAFPFTVQE------VVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT 135
Query: 127 KVVLSGGERKRLSFA------TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGGE++R+ A + L DEPT+ LD +R+ R+L +
Sbjct: 136 ---LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREG- 191
Query: 181 KTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGSKDAAL 219
VL +H + L + D+I+LL R GS L
Sbjct: 192 GAVLAVLHDLN--LAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 9e-12
Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 27/188 (14%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGKPVEGK------FRSACGF 64
++VA +G SG GKST L L R+ D ++G+IR++G+ + K R G
Sbjct: 30 SVVAFIGPSGCGKSTFLR-LFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGM 88
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE----LGLMNSQHTRIG 120
++Q P +++E++ + RV + A I + E L + ++
Sbjct: 89 VFQRPNPFPK-SIFENVAY------GLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLK 141
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
S+ LSGG+++RL A + P++LL DEP + LD S +K+ ++ EL ++
Sbjct: 142 ESAFA----LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL--KKD 195
Query: 181 KTVLCTIH 188
T++ H
Sbjct: 196 YTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-11
Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 30/184 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G + I+G SGAGKSTL+ L RL D +G I ++G ++ R G ++Q
Sbjct: 29 GAIYTIVGPSGAGKSTLIK-LINRLIDP--TEGSILIDGVDIKTIDVIDLRRKIGMVFQQ 85
Query: 69 DLFSPSL---TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
P L TV +++ + +LK ++ V ++++ GL TR
Sbjct: 86 ----PHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIV-------GLNKEYATR------- 127
Query: 126 QKVV-LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
V LSGGE +R+S A L +P +LL DEPT+ LD S + ++ +L ++ TV+
Sbjct: 128 -DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVI 186
Query: 185 CTIH 188
H
Sbjct: 187 WITH 190
|
Length = 241 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 1e-11
Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 33/197 (16%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALS--QRLPDDCII------------DGDIRVNGKPV 54
A +G +++I+G+SG+GKST L ++ ++ + I+ DG ++V K
Sbjct: 27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQ 86
Query: 55 EGKFRSACGFMYQHDLFSPSLTVYEHLY-----FMALLKLDRRVKAYQRIALINSLLIEL 109
R+ ++QH +TV E++ + L K + R +A + + + I+
Sbjct: 87 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERA---VKYLAKVGID- 142
Query: 110 GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI 169
+ V LSGG+++R+S A L +P +LL DEPT+ LD +++
Sbjct: 143 ----------ERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVL 192
Query: 170 RMMRELTSQRKKTVLCT 186
R+M++L + K V+ T
Sbjct: 193 RIMQQLAEEGKTMVVVT 209
|
Length = 257 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-11
Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 35/188 (18%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KF 58
L+ +G ++ ++G +GAGKSTLLA ++ LP G I+ G+P+E +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 59 RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
R ++ Q ++ V+++L L + + + +N + LGL +
Sbjct: 71 R---AYLSQQQTPPFAMPVFQYL----TLHQPDKTRTEAVASALNEVAEALGLDDKLGR- 122
Query: 119 IGSSSITQKVVLSGGE--RKRLSFATELLTDPA------LLLCDEPTTGLDSFSASKLIR 170
S+ Q LSGGE R RL+ A L P LLL DEP LD + L R
Sbjct: 123 ----SVNQ---LSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDR 174
Query: 171 MMRELTSQ 178
++ EL Q
Sbjct: 175 LLSELCQQ 182
|
Length = 248 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-11
Identities = 50/191 (26%), Positives = 97/191 (50%), Gaps = 35/191 (18%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCI---IDGDIRVNGKPV-EGK-----FRSACGFM 65
+ AI+G SG GK+TLL +++ R+ D ++G I G+ + + + +R G +
Sbjct: 31 ITAIIGPSGCGKTTLLRSIN-RMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMV 89
Query: 66 YQHDLFSPSLTVYEHLYFMALL-------KLDRRV-KAYQRIALINSLLIELGLMNSQHT 117
+Q P +++Y+++ F + KLDR V ++ ++ AL + + EL ++
Sbjct: 90 FQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTR-- 146
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
LSGG+++RL A L +P ++L DEPT+ LD + ++ +++ EL+
Sbjct: 147 ------------LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS- 193
Query: 178 QRKKTVLCTIH 188
T++ H
Sbjct: 194 -ENYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-11
Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 15 LVAIMGASGAGKSTLLAALS---QRLPD-----DCIIDGDIRVNGKPVEGKFRSACGFMY 66
+ AI+G SG GKST + L+ Q +P+ + +G + GK + R G ++
Sbjct: 40 VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVF 99
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q P ++++++ + + + K Q I L ++ L + R+ + +++
Sbjct: 100 QKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIV--EKSLKDVALWDEVKDRLHTQALS- 155
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+++RL A L T+P +LL DEPT+ LD S K+ ++ +L + K T++
Sbjct: 156 ---LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL--KEKYTIVIV 210
Query: 187 IH 188
H
Sbjct: 211 TH 212
|
Length = 259 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 3e-11
Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 39/209 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMY--- 66
G ++ I G GAG++ L AL P G+I ++GKPV + G Y
Sbjct: 285 GEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSPRDAIKAGIAYVPE 341
Query: 67 ---QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-----ALINSLLIELGL-MNSQHT 117
L +++ E + L L R + AL + L + S
Sbjct: 342 DRKSEGLV-LDMSIAE---NITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ 397
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
IG+ LSGG ++++ A L TDP +L+ DEPT G+D + +++ R++REL +
Sbjct: 398 PIGT--------LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA 449
Query: 178 QRKKTVLCTIHQPSSELIDMFDKIILLAD 206
+ K ++ I SSEL +++ L+D
Sbjct: 450 EGKAILM--I---SSEL----PELLGLSD 469
|
Length = 500 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-11
Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 58/239 (24%)
Query: 18 IMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEGKFRSAC--------GFMYQ 67
IMG SG+GKSTLL ++ RL P G + ++G+ + R ++Q
Sbjct: 55 IMGLSGSGKSTLLRCIN-RLIEPTS----GKVLIDGQDIAAMSRKELRELRRKKISMVFQ 109
Query: 68 HDLFSPSLTVYEHLYF----MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
P TV E++ F + + +R +A + + L+ GL +H
Sbjct: 110 SFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV-------GLEGWEHKYPDE-- 160
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMRE---LTSQ 178
LSGG ++R+ A L DP +LL DE + LD LIR M E L ++
Sbjct: 161 ------LSGGMQQRVGLARALAVDPDILLMDEAFSALDP-----LIRREMQDELLRLQAE 209
Query: 179 RKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPAD 237
+KT++ H E + + D+I ++ D R +G+ + L NPA+
Sbjct: 210 LQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEILT-------------NPAN 254
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-11
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 41/191 (21%)
Query: 17 AIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGK--------PVEGKFRSACGFMY 66
A++G SG GKST L +++ L D ++G++ GK PV R G ++
Sbjct: 69 AMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV--ALRRRIGMVF 126
Query: 67 QHDLFSPSLTVYEHLYFMALLK-----LDRRV-KAYQRIAL---INSLLIELGLMNSQHT 117
Q P ++Y+++ + ++ +D RV ++ +R AL + L GL
Sbjct: 127 QKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGL------ 179
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
LSGG+++RL A + DP ++L DEP + LD + SK+ ++ EL
Sbjct: 180 -----------DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE 228
Query: 178 QRKKTVLCTIH 188
+ TV+ H
Sbjct: 229 EY--TVVIVTH 237
|
Length = 285 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 4e-11
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 30/212 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA----CGFMYQH 68
G+L ++G +G+GKSTLL L+ L D G + + G + G R A + Q
Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQD 83
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRI----ALINSLLIELGLMNSQHTRIGSSSI 124
+ LTV R V A RI + +++ R S +
Sbjct: 84 SDTAVPLTV-------------RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL 130
Query: 125 TQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
+ + LSGGER+R+ A L +P LLL DEPT LD + + + ++REL + T
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATG-VT 189
Query: 183 VLCTIHQPSSELIDMF-DKIILLADSRTAFIG 213
V+ +H + L + D +++L R G
Sbjct: 190 VVAALHDLN--LAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 5e-11
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 65/203 (32%)
Query: 13 GTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMY-- 66
G +V I G G G++ L AL R P G+I ++GKPV + G Y
Sbjct: 26 GEIVGIAGLVGNGQTELAEALFGLRPPAS----GEITLDGKPVTRRSPRDAIRAGIAYVP 81
Query: 67 ---QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+ + L+V E++ ++SLL
Sbjct: 82 EDRKREGLVLDLSVAENI-------------------ALSSLL----------------- 105
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
SGG ++++ A L DP +L+ DEPT G+D + +++ R++REL K +
Sbjct: 106 -------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
Query: 184 LCTIHQPSSELIDMFDKIILLAD 206
L SSEL D+++ L D
Sbjct: 159 LI-----SSEL----DELLGLCD 172
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 5e-11
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 32/232 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG------KPVEGKFRSACG-F 64
G + AIMG +G+GKSTL ++ P + G I G +P E R+ G F
Sbjct: 25 KGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDE---RARAGLF 80
Query: 65 M-YQHDLFSPSLTVYEHLYFMALLKLDRR-------VKAYQRIALINSLLIELGLMNSQH 116
+ +Q+ P ++ E F+ RR + + L+ + L LG+
Sbjct: 81 LAFQYPEEIPGVSNLE---FLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFL 137
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMREL 175
R + SGGE+KR L +P L + DE +GLD A K++ + L
Sbjct: 138 NR------SVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD-IDALKIVAEGINRL 190
Query: 176 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGY 227
+ ++ T +Q I D + +L D R G + A LE +GY
Sbjct: 191 REPDRSFLIITHYQRLLNYIKP-DYVHVLLDGRIVKSGDVELAKE-LEEKGY 240
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-11
Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 17/174 (9%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGKPVEGKF------RSA 61
LS + AI+G SG GKST L A++ R+ D C G + +G+ + GKF R
Sbjct: 63 LSKYVTAIIGPSGCGKSTFLRAIN-RMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKK 121
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
G ++Q P ++++++ + L K + I + L + L + R+
Sbjct: 122 IGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEI--VEKSLRKAALWDEVSDRLDK 178
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+++ LSGG+++RL A L +P +LL DEPT+ LD + +K+ +++EL
Sbjct: 179 NALG----LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL 228
|
Length = 286 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 8e-11
Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 29/200 (14%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFMYQHDLF 71
+A++G SGAGK++LL AL LP G +++NG + +R ++ Q
Sbjct: 379 IALVGPSGAGKTSLLNALLGFLP----YQGSLKINGIELRELDPESWRKHLSWVGQ---- 430
Query: 72 SPSL---TVYEHLYFMALLKLDRRVKAYQRIALINSLL--IELGLMNSQHTRIGSSSITQ 126
+P L T+ +++ D +++ A ++ L + GL T IG +
Sbjct: 431 NPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGL----DTPIGDQAAG- 485
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LS G+ +RL+ A LL LLL DEPT LD+ S +++ + S+R+ T++ T
Sbjct: 486 ---LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQTTLMVT 541
Query: 187 IHQPSSELIDMFDKIILLAD 206
HQ +L D+I ++ D
Sbjct: 542 -HQ-LEDLAQW-DQIWVMQD 558
|
Length = 588 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 1e-10
Identities = 53/177 (29%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE---GKFRSACGFMYQHD 69
G ++G +GAGK+T L+ D + GD V GK + G+ Q D
Sbjct: 1965 GECFGLLGVNGAGKTTTFKMLTG---DTTVTSGDATVAGKSILTNISDVHQNMGYCPQFD 2021
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
LT EHLY A L R V A + + N + LGL G+
Sbjct: 2022 AIDDLLTGREHLYLYARL---RGVPAEEIEKVANWSIQSLGLSLYADRLAGT-------- 2070
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
SGG +++LS A L+ P L+L DEPTTG+D + L + + + + VL +
Sbjct: 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTS 2127
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-10
Identities = 50/184 (27%), Positives = 93/184 (50%), Gaps = 16/184 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEG------KFRSACGF 64
GT+ A++G SG GK+T L A+++ L + G I ++G+ + G R G
Sbjct: 30 GTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGM 89
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
++Q P+++V++++ +A LKL + + L L + R+ + +
Sbjct: 90 VFQKPNPFPTMSVFDNV--VAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPAT 147
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+++RL A L +P +LL DEPT+ LD S +++ +M +L ++ T++
Sbjct: 148 G----LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL--KKVTTII 201
Query: 185 CTIH 188
H
Sbjct: 202 IVTH 205
|
Length = 252 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-10
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 35/213 (16%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQ 67
G ++G SG GK+TLL A P G+I ++GK + + ++Q
Sbjct: 26 GEFFTLLGPSGCGKTTLLRLIAGFET--PTS----GEILLDGKDITNLPPHKRPVNTVFQ 79
Query: 68 H-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
+ LF P LTV+E++ F L+L + KA + + L + L + +
Sbjct: 80 NYALF-PHLTVFENIAFG--LRLKKLPKAEIK-ERVAEALDLVQLEGYANRKPSQ----- 130
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR-ELTSQRKKT--- 182
LSGG+++R++ A L+ +P +LL DEP LD KL + M+ EL +K+
Sbjct: 131 ---LSGGQQQRVAIARALVNEPKVLLLDEPLGALD----LKLRKDMQLELKRLQKELGIT 183
Query: 183 -VLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
V T Q E + M D+I ++ + IG+
Sbjct: 184 FVFVTHDQ--EEALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 1e-10
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 37/190 (19%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 68
+G LV I G +GAGK++LL A L++ PD G++ G+P+ Y
Sbjct: 26 AGELVQIEGPNGAGKTSLLRILAGLAR--PD----AGEVLWQGEPI-----RRQRDEYHQ 74
Query: 69 DLF--------SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
DL LT E+L F R+ + L ++GL + +
Sbjct: 75 DLLYLGHQPGIKTELTALENLRFYQ------RLHGPGDDEALWEALAQVGLAGFEDVPVR 128
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LS G+++R++ A LT L + DEP T +D ++L ++ + ++
Sbjct: 129 --------QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA-EQG 179
Query: 181 KTVLCTIHQP 190
V+ T HQ
Sbjct: 180 GMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-10
Identities = 45/186 (24%), Positives = 91/186 (48%), Gaps = 24/186 (12%)
Query: 14 TLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEGK------FRSACGFM 65
++ A++G SG GKST + L++ L +C I+G + + G+ + R G +
Sbjct: 39 SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMV 98
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL---INSLLIELGLMNSQHTRIGSS 122
+Q P +++Y+++ + R+ + L + + L L + R+ S
Sbjct: 99 FQKPNPFP-MSIYDNVAY------GPRIHGANKKDLDGVVENALRSAALWDETSDRLKSP 151
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
+++ LSGG+++RL A L P ++L DEPT+ LD S +++ ++ L ++ T
Sbjct: 152 ALS----LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL--KKDYT 205
Query: 183 VLCTIH 188
++ H
Sbjct: 206 IVIVTH 211
|
Length = 258 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 37/210 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPVEGKFRSA-------CGF 64
G + A+MG +GAGKSTLL LS PD G I ++G+ + +F S
Sbjct: 30 GQVHALMGENGAGKSTLLKILSGNYQPD----AGSILIDGQEM--RFASTTAALAAGVAI 83
Query: 65 MYQHDLFSPSLTVYEHLYFMAL---LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
+YQ P +TV E+LY L + R L LG+ T +
Sbjct: 84 IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQ---LEHLGVDIDPDTPLKY 140
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
SI G+R+ + A L + ++ DEPT+ L + +L R++REL ++ +
Sbjct: 141 LSI--------GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE-GR 191
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAF 211
+L H+ ++I L D+ T F
Sbjct: 192 VILYVSHR--------MEEIFALCDAITVF 213
|
Length = 501 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 41/198 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----------GKFRSAC 62
G ++ I+G SG+GKSTLL L+ RL D I +G +E R+
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88
Query: 63 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
GF++Q+ L RV A A I L+ +G + + R +
Sbjct: 89 GFVHQN----------------PRDGLRMRVSAG---ANIGERLMAIGARHYGNIRATAQ 129
Query: 123 SITQKV------------VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170
++V SGG ++RL A L+T P L+ DEPT GLD ++L+
Sbjct: 130 DWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 189
Query: 171 MMRELTSQRKKTVLCTIH 188
++R L V+ H
Sbjct: 190 LLRGLVRDLGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-10
Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 69/218 (31%)
Query: 13 GTLVAIMGASGAGKSTLL-----AALSQRL--------PDDCI-----IDGDIRVNGKPV 54
G L + G SG+GKS+L+ AL++RL D I ID I ++ P+
Sbjct: 21 GVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPI 80
Query: 55 EGKFRS-----ACGFMYQHDLFSPS-------------------------LTVYE-HLYF 83
RS F +LF +TV E +F
Sbjct: 81 GRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFF 140
Query: 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 143
+ K+ R+++ L ++GL + ++G + T LSGGE +R+ A E
Sbjct: 141 ENIPKIARKLQT----------LCDVGL---GYIKLGQPATT----LSGGEAQRIKLAKE 183
Query: 144 LL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
L T L + DEPTTGL KL+ +++ L +
Sbjct: 184 LSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK 221
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 37/196 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPV--------EGKF--RSA 61
G ++ I+G SG+GK+TLL +S RL PD + +R +G+P E + R+
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMR-DGQPRDLYTMSEAERRRLLRTE 90
Query: 62 CGFMYQHDL------FSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLL--IELGLM 112
GF++Q+ S + E L MA+ + Y I A L +E+ L
Sbjct: 91 WGFVHQNPRDGLRMQVSAGGNIGERL--MAI-----GARHYGNIRAEAQDWLEEVEIDL- 142
Query: 113 NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 172
RI SGG ++RL A L+T P L+ DEPT GLD ++L+ ++
Sbjct: 143 ----DRIDD----LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 194
Query: 173 RELTSQRKKTVLCTIH 188
R L + V+ H
Sbjct: 195 RGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 28/193 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALS--QRLPDDCI-IDGDIRVNGKPVEGKF----------- 58
G VA++G SG+GKST+L L + + + I ++G+ + G
Sbjct: 26 GEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQM 85
Query: 59 RSACGFMYQH-DLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQH 116
R+ G ++Q +LF P TV +++ +L L R +A +R LL +GL
Sbjct: 86 RNKIGMVFQSFNLF-PHKTVLDNVTEAPVLVLGMARAEAEKRAM---ELLDMVGL----- 136
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
+ LSGG+++R++ A L P ++L DE T+ LD +++ ++R L
Sbjct: 137 ---ADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLA 193
Query: 177 SQRKKTVLCTIHQ 189
S+ T+L H+
Sbjct: 194 SEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 41/215 (19%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G V +G SG GKSTLL A L D I G+ R+N V R G ++Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMN--DVPPAERGV-GMVFQSY 84
Query: 70 LFSPSLTVYEHLYFMALLKL--------DRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
P L+V E++ F LKL ++RV + + LL R
Sbjct: 85 ALYPHLSVAENMSFG--LKLAGAKKEEINQRVNQVAEVLQLAHLL----------DR--- 129
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
+ LSGG+R+R++ L+ +P++ L DEP + LD A+ ++M E++ K+
Sbjct: 130 ----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD---AALRVQMRIEISRLHKR 182
Query: 182 ---TVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213
T++ H E + + DKI++L R A +G
Sbjct: 183 LGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-10
Identities = 51/215 (23%), Positives = 100/215 (46%), Gaps = 20/215 (9%)
Query: 15 LVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVEGK------FRSACGFMY 66
+ A++G SG GKST L L++ L + I+G++ ++GK + K R G ++
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q P +++Y+++ + + + K +I + L + L + + S++
Sbjct: 92 QKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKI--VEWALKKAALWDEVKDDLKKSALK- 147
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+++RL A + P ++L DEPT+ LD S K+ +M EL + ++
Sbjct: 148 ---LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTH 204
Query: 187 IHQPSSELID-----MFDKIILLADSRTAFIGSKD 216
Q +S + D + +I + F+ +
Sbjct: 205 NMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQK 239
|
Length = 251 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 2e-10
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
G V I+G +G+GKS+LL AL RL + G I ++G + RS + Q
Sbjct: 29 PGEKVGIVGRTGSGKSSLLLAL-FRLVELS--SGSILIDGVDISKIGLHDLRSRISIIPQ 85
Query: 68 HD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
D LFS T+ +L + +A +R+ L + G +++ G +
Sbjct: 86 -DPVLFSG--TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGEN--- 139
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LS G+R+ L A LL +L+ DE T +D + + + + +RE TVL
Sbjct: 140 ----LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDC--TVLT 193
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGS 214
H+ + +ID D+I++L R S
Sbjct: 194 IAHRLDT-IID-SDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 2e-10
Identities = 47/189 (24%), Positives = 94/189 (49%), Gaps = 23/189 (12%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEG------KFRSAC 62
L ++ A++G SG GKST L L++ L + I+G++ GK + + R
Sbjct: 31 LKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKI 90
Query: 63 GFMYQHDLFSPS---LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
G ++Q +P+ +++Y+++ + + + K I + L + L N ++
Sbjct: 91 GMVFQ----TPNPFLMSIYDNISYGPKIHGTKDKKKLDEI--VEQSLKKSALWNEVKDKL 144
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
+++++ LSGG+++RL A L +P ++L DEPT+ LD S K+ ++ L +
Sbjct: 145 NTNALS----LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL--KE 198
Query: 180 KKTVLCTIH 188
T++ H
Sbjct: 199 SYTIIIVTH 207
|
Length = 254 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-10
Identities = 62/225 (27%), Positives = 88/225 (39%), Gaps = 48/225 (21%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-----PDDCIIDGDIRVNGKPVEG--KFRSAC--- 62
G + A++G +GAGKSTLL AL+ L P + GD+ +NG+P+ R A
Sbjct: 27 GRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRA 86
Query: 63 --------GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS 114
F + L Y H L A+Q +A
Sbjct: 87 VLPQAAQPAFAFSAREIV-LLGRYPHARRAGALTHRDGEIAWQALA-------------- 131
Query: 115 QHTRIGSSSITQKVV--LSGGERKRLSFATEL---------LTDPALLLCDEPTTGLDSF 163
G++++ + V LSGGE R+ FA L P LL DEPT LD
Sbjct: 132 ---LAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLA 188
Query: 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208
+L+ +R L VL +H P+ D+I +LAD
Sbjct: 189 HQHRLLDTVRRLARDWNLGVLAIVHDPNLA-ARHADRIAMLADGA 232
|
Length = 272 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-10
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 31/220 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--------CGF 64
G + IMG SG+GKSTL+ L+ RL + G+I V+GK + +
Sbjct: 54 GEIFVIMGLSGSGKSTLVRLLN-RLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISM 110
Query: 65 MYQHDLFSPSLTVYEHLYF----MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
++Q P TV E++ F + K +R +A + + L+ GL
Sbjct: 111 VFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELV-------GLEGYADKYPN 163
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGG ++R+ A L DP +LL DE + LD +++ + EL ++ K
Sbjct: 164 E--------LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215
Query: 181 KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
KT++ H E + + D+I ++ D +G+ + L
Sbjct: 216 KTIVFITHD-LDEALRIGDRIAIMKDGEIVQVGTPEEILL 254
|
Length = 386 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-10
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 47/191 (24%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-------------FR 59
G ++ I+G SG+GK+TLL ALS RL D G++ + + + R
Sbjct: 32 GEVLGIVGESGSGKTTLLNALSARLAPDA---GEVHYRMRDGQLRDLYALSEAERRRLLR 88
Query: 60 SACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
+ GF++QH L +V A I L+ +G + R
Sbjct: 89 TEWGFVHQH----------------PRDGLRMQVSAG---GNIGERLMAVGARHYGDIRA 129
Query: 120 GSSSITQKVVL------------SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASK 167
+ ++V + SGG ++RL A L+T P L+ DEPT GLD ++
Sbjct: 130 TAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQAR 189
Query: 168 LIRMMRELTSQ 178
L+ ++R L +
Sbjct: 190 LLDLLRGLVRE 200
|
Length = 258 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-10
Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 29/178 (16%)
Query: 16 VAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEGK------FRSACGFMYQ 67
A +G SG GKSTLL ++ L D+C I+G+IR++G+ + K R G ++Q
Sbjct: 54 TAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQ 113
Query: 68 H-DLFSPSLTVYEHLYFMALLKL----DRRV--KAYQRIALINSLLIELGLMNSQHTRIG 120
+ F S +YE++ + L+L +RRV +A +R +L + L + R+
Sbjct: 114 RPNPFPKS--IYENVVYG--LRLQGINNRRVLDEAVER-SLRGA-----ALWDEVKDRLH 163
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
++ LSGG+++RL A + +P +LL DEPT+ LD S K+ ++ EL S+
Sbjct: 164 ENAFG----LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSK 217
|
Length = 272 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 4e-10
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 31/180 (17%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDC---IIDGDIRVNGKPVEG------KFRSACGFM 65
L A++G SG GKST L L+ R+ DD I G+I+ G+ + G + R G +
Sbjct: 32 LTALIGPSGCGKSTFLRCLN-RMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMV 90
Query: 66 YQHDLFSPSLTVYEHLYF---MALLK----LDRRVKAYQRIALINSLLIELGLMNSQHTR 118
+Q P +VY+++ + +A +K +D+RV+ + A I + N+Q
Sbjct: 91 FQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQ--- 146
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
SGG+++R+ A L P ++L DEPT+ LD S+S++ + EL Q
Sbjct: 147 ----------AFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ 196
|
Length = 251 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 5e-10
Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 60/225 (26%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK-----PVEGKFRSACGFMYQ 67
G + A+MG +G+GKSTL + P + +G+I G+ P E + R +Q
Sbjct: 26 GEVHALMGPNGSGKSTLAKTIMGH-PKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQ 84
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
+ P + + L ++
Sbjct: 85 YPPEIPGVKNADFLRYV------------------------------------------N 102
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLD--SFSA-SKLIRMMRELTSQRKKTVL 184
SGGE+KR LL +P L + DEP +GLD + +++I +RE K+VL
Sbjct: 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE----EGKSVL 158
Query: 185 CTIHQPSSELIDMF--DKIILLADSRTAFIGSKDAALAFLESQGY 227
H L+D D++ +L D R G K+ AL +E +GY
Sbjct: 159 IITHYQ--RLLDYIKPDRVHVLYDGRIVKSGDKELALE-IEKKGY 200
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 5e-10
Identities = 56/218 (25%), Positives = 82/218 (37%), Gaps = 38/218 (17%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
V I+G +GAGKSTLL ++ G ++V GK G F P L
Sbjct: 56 VGIIGHNGAGKSTLLKLIAGIYKPTS---GKVKVTGKVAPL-IELGAG-------FDPEL 104
Query: 76 TVYEHLYFMALL------KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV- 128
T E++Y L+ ++D +V A ELG I Q V
Sbjct: 105 TGRENIYLRGLILGLTRKEIDEKVDEIIEFA-------ELG-----------DFIDQPVK 146
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
S G RL+F+ +P +LL DE D+ K + + EL + K VL + H
Sbjct: 147 TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVS-H 205
Query: 189 QPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQG 226
+ D+ I L + GS + + E
Sbjct: 206 DL-GAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDL 242
|
Length = 249 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 33/182 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALS--QRLPDDCII--DGDIRVNGKPV----EGKFRSACG- 63
G +A++G SG+GKS + ALS + LP ++ GDIR +G+ + E R G
Sbjct: 35 GETLALVGESGSGKS--VTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGN 92
Query: 64 ---FMYQHDLFS--PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
++Q + S P T+ + LY + L R +A R ++N L R
Sbjct: 93 KIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREA-ARGEILNCL-----------DR 140
Query: 119 IGSSSITQKVV-----LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
+G +++ LSGGER+R+ A LLT P LL+ DEPTT LD +++++++R
Sbjct: 141 VGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLR 200
Query: 174 EL 175
EL
Sbjct: 201 EL 202
|
Length = 529 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-10
Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 18/180 (10%)
Query: 17 AIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD 69
A++G SG GKSTLL L++ L + I G + ++G+ + G R G ++Q
Sbjct: 33 ALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKP 92
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSITQKV 128
P +++YE++ + L+ + +K + + ++ L L + R+ S +
Sbjct: 93 NPFP-MSIYENVAYG--LRA-QGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFG--- 145
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+++RL A + +P ++L DEPT+ LD + K+ +M EL ++ T++ H
Sbjct: 146 -LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL--KKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (141), Expect = 5e-10
Identities = 52/202 (25%), Positives = 99/202 (49%), Gaps = 19/202 (9%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCI---IDGDIRVNGKPVEG-----KFRSACGFMY 66
+ ++MG +G+GK+T L L+ R+ D GD+ + G+ + +FR G ++
Sbjct: 49 VTSLMGPTGSGKTTFLRTLN-RMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLF 107
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q P +++ +++ +A ++ + V + + + L E+GL ++ R+ S
Sbjct: 108 QRPNPFP-MSIMDNV--LAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR- 163
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+++ L A L +P +LL DEPT+ LD + K+ +R L + TV+
Sbjct: 164 ---LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIV 218
Query: 187 IHQPSSELIDMFDKIILLADSR 208
H ++ + D+ L D R
Sbjct: 219 THN-LAQAARISDRAALFFDGR 239
|
Length = 276 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 7e-10
Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 51/227 (22%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK----------PVEGKFRSAC 62
G VAI+G SGAGKSTLL ++ L G + +NG+ PV F+
Sbjct: 25 GERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQ--- 78
Query: 63 GFMYQHDLFSPSLTVYEHLYFMAL-----LKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
+++LF LTV +++ L LKL+ A QR L +++ ++G+ +
Sbjct: 79 ----ENNLF-SHLTVAQNI---GLGLNPGLKLN----AAQREKL-HAIARQMGIED-LLA 124
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
R+ LSGG+R+R++ A L+ + +LL DEP + LD +++ ++ ++
Sbjct: 125 RLPGQ-------LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQ 177
Query: 178 QRKKTVLCTIHQPSSELIDMFDKI----ILLADSRTAFIGSKDAALA 220
+R+ T+L H ++ +I +++AD R A+ G D L+
Sbjct: 178 ERQLTLLMVSHS-----LEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 7e-10
Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 31/186 (16%)
Query: 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFR 59
L+G +G ++ ++G +GAGKSTLLA ++ G I+ G+P+E +
Sbjct: 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----GSGSIQFAGQPLEAWSATELA 71
Query: 60 SACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
++ Q ++ V+ +L R L+N + L L +
Sbjct: 72 RHRAYLSQQQTPPFAMPVWHYLTL--------HQPDKTRTELLNDVAGALALDDKLG--- 120
Query: 120 GSSSITQKVVLSGGERKRLSFATELL-----TDPA--LLLCDEPTTGLDSFSASKLIRMM 172
S Q LSGGE +R+ A +L +PA LLL DEP LD S L R++
Sbjct: 121 --RSTNQ---LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLL 175
Query: 173 RELTSQ 178
L Q
Sbjct: 176 SALCQQ 181
|
Length = 248 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 9e-10
Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 33/199 (16%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGK--------PVEGKFRSACG 63
+ A +G SG GKST+L + RL D ++G + +GK PVE R G
Sbjct: 38 ITAFIGPSGCGKSTILRCFN-RLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE--VRRRIG 94
Query: 64 FMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQ--RIALINSLLIELGLMNSQHTRIG 120
++Q + F S +Y+++ + A R+ Y+ L+ L + L + ++
Sbjct: 95 MVFQKPNPFPKS--IYDNIAYGA------RINGYKGDMDELVERSLRQAALWDEVKDKLK 146
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
S ++ LSGG+++RL A + P ++L DEP + LD S ++ +M EL + +
Sbjct: 147 QSGLS----LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL--KEQ 200
Query: 181 KTVLCTIH--QPSSELIDM 197
T++ H Q ++ + DM
Sbjct: 201 YTIIIVTHNMQQAARVSDM 219
|
Length = 264 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
++ ++G +GAGKSTLL ++ L G+I +G P K G + +
Sbjct: 25 KNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLHKIGSLIESPPL 81
Query: 72 SPSLTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
+LT E+L LL L + I+ +L + L N+ + S+
Sbjct: 82 YENLTARENLKVHTTLLGLPD--------SRIDEVLNIVDLTNTGKKKAKQFSL------ 127
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
G ++RL A LL P LL+ DEPT GLD +L ++R Q
Sbjct: 128 --GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 1e-09
Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 17/212 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLP---DDCIIDG-DI-RVNGKPVEGKFRSACGFMYQ 67
G + IMG SG+GKST++ L++ + +IDG DI +++ + R ++Q
Sbjct: 54 GEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQ 113
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
P +TV ++ F L + A +R L ++GL N H+
Sbjct: 114 SFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYPDE------ 164
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG R+R+ A L +P +LL DE + LD +++ + +L ++ ++T++
Sbjct: 165 --LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219
H E + + D+I ++ + +G+ D L
Sbjct: 223 HD-LDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 1e-09
Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 37/164 (22%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL------PDDCIIDGDIRVNGKPV----EGKFRSA- 61
G + ++GASGAGKSTL+ R P G + V+G+ + E + R A
Sbjct: 31 GEIFGVIGASGAGKSTLI-----RCINLLERPTS----GRVLVDGQDLTALSEKELRKAR 81
Query: 62 --CGFMYQH-DLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
G ++QH +L S S TV++++ AL L+L KA + A + LL +GL + +
Sbjct: 82 RQIGMIFQHFNLLS-SRTVFDNV---ALPLELAGTPKA-EIKARVTELLELVGLSD-KAD 135
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
R + LSGG+++R++ A L ++P +LLCDE T+ LD
Sbjct: 136 RYPAQ-------LSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD---CIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G L ++G +GAGK+TL+ ++ + + DGD + P R+ G +Q
Sbjct: 31 GELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKP 90
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL-------INSLLIELGLMNSQHTRIGSS 122
+LTV E+L L D+ V A L I+ LL +GL + +
Sbjct: 91 TVFENLTVRENL--ELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL- 147
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LS G+++ L L DP LLL DEP G+ K +++ L K +
Sbjct: 148 -------LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL--AGKHS 198
Query: 183 VLCTIH 188
+L H
Sbjct: 199 ILVVEH 204
|
Length = 249 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 2e-09
Identities = 61/216 (28%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 12 SGTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPVEGKF----RSACGFMY 66
+G +V I G +G G+S L+ A+S R P G I +NGK V G+ R G Y
Sbjct: 283 AGEIVGIAGVAGNGQSELVEAISGLRKPAS----GRILLNGKDVLGRLSPRERRRLGLAY 338
Query: 67 ------QHDLFSPSLTVYEHL---YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
H L L++ E+L + I LIE
Sbjct: 339 VPEDRHGHGL-VLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIE-------EF 390
Query: 118 RIGSSSITQKV-VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
+ + S LSGG +++L A EL P LL+ +PT GLD + + + EL
Sbjct: 391 DVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR 450
Query: 177 SQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 212
K +L S +L D+I+ L+D R A I
Sbjct: 451 DAGKAVLLI-----SEDL----DEILELSD-RIAVI 476
|
Length = 501 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 29/180 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM--YQHDL 70
G + ++G SG+GKSTL AL + +P G+IR +G+ ++G R M + +
Sbjct: 313 GQTLGLVGESGSGKSTLGLALLRLIPSQ----GEIRFDGQDIDGLSRKE---MRPLRRRM 365
Query: 71 ----------FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
SP +TV + L + ++ A +R + L E+GL + R
Sbjct: 366 QVVFQDPYGSLSPRMTV-GQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP 424
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
SGG+R+R++ A L+ P L+L DEPT+ LD ++++ ++R+L Q+K
Sbjct: 425 HE-------FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL--QQK 475
|
Length = 534 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-09
Identities = 53/153 (34%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G + A++GASG GKSTLL A Q ++DG + P ++ M+Q
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP----YQRPINMMFQSY 100
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE-LGLMNSQHTRIGSSSITQKV 128
P +TV +++ F LK D+ KA I S + E LGL++ Q Q
Sbjct: 101 ALFPHMTVEQNIAFG--LKQDKLPKAE-----IASRVNEMLGLVHMQ--EFAKRKPHQ-- 149
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LSGG+R+R++ A L P LLL DEP LD
Sbjct: 150 -LSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-09
Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 17 AIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGKPVEGK------FRSACGFMYQ 67
A +G SG GKST L + R+ D +C + G++ ++G V R+ G ++Q
Sbjct: 35 AFIGPSGCGKSTFLRCFN-RMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQ 93
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSITQ 126
P ++Y+++ + KL K +++ ++ L +GL R+ S+
Sbjct: 94 KPNPFPK-SIYDNVAYGP--KLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFE- 149
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
LSGG+++RL A + P +LL DEP + LD + + + +++EL
Sbjct: 150 ---LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL 195
|
Length = 251 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 19/188 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCII--DGDIRVNGKPVEG-------KFRSA-C 62
G +A++G SG+GKS ++ LP G I +G+ + R
Sbjct: 36 GETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKI 95
Query: 63 GFMYQHDLFS--PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
G ++Q + S P T+ + L +L+L R + A LL +G+ + R+
Sbjct: 96 GMIFQEPMTSLNPLHTIGKQLA--EVLRLHRGLSRAAARARALELLELVGIPEPEK-RLD 152
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
+ LSGG+R+R+ A L +P LL+ DEPTT LD ++++ +++EL ++
Sbjct: 153 AYPHE----LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELG 208
Query: 181 KTVLCTIH 188
+L H
Sbjct: 209 MAILFITH 216
|
Length = 534 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 26/217 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPD----DCIIDG-DIRVNGKPVEGKFRSACGFMY 66
G VAI+G SGAGKST+L L R D IDG DIR + R A G +
Sbjct: 288 LGKTVAIVGESGAGKSTILRLLF-RFYDVNSGSITIDGQDIRD---VTQQSLRRAIGIVP 343
Query: 67 Q-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSS 123
Q LF+ T+ ++ + V A A I+ + L G T +G
Sbjct: 344 QDTVLFND--TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGY----DTGVGERG 397
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ LSGGE++R++ A +L +P +L+ DE T+ LD+ + + +RE+++ R T
Sbjct: 398 LK----LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGR--TT 451
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
L H+ S+ +ID D+II+L + R G+ + LA
Sbjct: 452 LVIAHRLST-IIDA-DEIIVLDNGRIVERGTHEELLA 486
|
Length = 497 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 67/233 (28%), Positives = 103/233 (44%), Gaps = 46/233 (19%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFR--- 59
L+GAAL+ G ++A++G +GAGKST++ L+ D G I GK V F
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDA---GSILYLGKEV--TFNGPK 74
Query: 60 ----SACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR-VKAYQRI------ALINSLLIE 108
+ G ++Q P LT+ E+++ L R V + RI A + LL
Sbjct: 75 SSQEAGIGIIHQELNLIPQLTIAENIF------LGREFVNRFGRIDWKKMYAEADKLLAR 128
Query: 109 LGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL 168
L L S +G SI GE++ + A L + +++ DEPT L L
Sbjct: 129 LNLRFSSDKLVGELSI--------GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180
Query: 169 IRMMRELTSQRKKTVLCTIHQPSSELIDMF---DKIILLADSRTAFIGSKDAA 218
R++REL SQ I S L ++F D + + D + FI ++ A
Sbjct: 181 FRVIRELKSQG-----RGIVYISHRLKEIFEICDDVTVFRDGQ--FIAEREVA 226
|
Length = 501 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 3e-09
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGGE++R+ A +L +P L L DEPT LD +A + + E +++ T H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 190 PSSELI-DMFDKIILLADSRTAFIGSKDAALA-FLES 224
P E+I D+ DK I L + G+ D +A F+E
Sbjct: 229 P--EVIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEG 263
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-09
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 21/184 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQ-RLPDD---CIIDGDIRVNGKPVEG---KFRSACGF 64
G + ++G SGAGKS+LL L+ +P I + P + R G
Sbjct: 27 EGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGM 86
Query: 65 MYQHDLFSPSLTVYEHLYF--MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
++Q P LTV E+L +L L + + L+ L R+
Sbjct: 87 VFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRL------------RLKPY 134
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
+ + LSGG+++R++ A L+ +P +LL DEPT LD ++++ +++EL
Sbjct: 135 ADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQ 194
Query: 183 VLCT 186
V+ T
Sbjct: 195 VIVT 198
|
Length = 242 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-09
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 30/188 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G + ++G +G+GKSTLL L + P +G+I ++ +P+E F ++ Q
Sbjct: 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQ 93
Query: 69 DLFSPSLTVYE------HLYFMALLKLDR--RVKAYQRIALINSLLIELGLMNSQHTRIG 120
+ +TV E + + AL + R K + I+L+ GL H +
Sbjct: 94 LPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV-------GLKPLAHRLVD 146
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
S LSGGER+R A + D LL DEPT+ LD ++ ++ L+ +R
Sbjct: 147 S--------LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG 198
Query: 181 KTVLCTIH 188
TV+ +H
Sbjct: 199 LTVIAVLH 206
|
Length = 265 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 5e-09
Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 15 LVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVE------GKFRSACGFMY 66
+ AI+G SG GKST + L++ L ++G + G+ + + R G ++
Sbjct: 35 VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVF 94
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
Q P +++YE++ + +++ ++ ++ S L L ++ S++
Sbjct: 95 QRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALG- 150
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
LSGG+++RL A L P +LL DEP + LD + K+ ++ L S+
Sbjct: 151 ---LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE 199
|
Length = 259 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-09
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 25/176 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNG--------KPVEGKFRSA 61
G + A++G SG GKST+L +L++ L + C + G + +G PVE R
Sbjct: 38 RGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE--VRRR 95
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ--RIALINSLLIELGLMNSQHTRI 119
G ++Q P ++YE++ F A R+ Y L+ L + + + ++
Sbjct: 96 IGMVFQQPNPFPK-SIYENIAFGA------RINGYTGDMDELVERSLRKAAVWDECKDKL 148
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
S + LSGG+++RL A + +P ++L DEP + LD S K+ M EL
Sbjct: 149 NESGYS----LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL 200
|
Length = 269 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-09
Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 30/201 (14%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 68
+G VA++G SG GKSTLL A L P G++ P+ + R M+Q
Sbjct: 37 AGQFVAVVGRSGCGKSTLLRLLAGLET--PSA----GELLAGTAPL-AEAREDTRLMFQD 89
Query: 69 DLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
P V +++ L LK R A Q +A +GL + +
Sbjct: 90 ARLLPWKKVIDNV---GLGLKGQWRDAALQALA-------AVGLADRANE--------WP 131
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+++R++ A L+ P LLL DEP LD+ + ++ ++ L Q TVL
Sbjct: 132 AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT 191
Query: 188 HQPSSELIDMFDKIILLADSR 208
H SE + M D+++L+ + +
Sbjct: 192 HD-VSEAVAMADRVLLIEEGK 211
|
Length = 257 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 6e-09
Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 39/182 (21%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI----IDGDIRVNGKPVEGK------FRSAC 62
+ +G SG GKST+L +L++ +D + +G + G+ V GK R
Sbjct: 34 NEITGFIGPSGCGKSTVLRSLNRM--NDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYI 91
Query: 63 GFMYQHDLFSP-SLTVYEHLYFMALLKLDR-------RVK-AYQRIALINSLLIELGLMN 113
G ++Q +P S+++++++ F L+L+R RVK A Q AL + +
Sbjct: 92 GMVFQQP--NPFSMSIFDNVAFG--LRLNRYKGDLGDRVKHALQGAALWDEV-------- 139
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
++ S ++ LSGG+++RL A + T+P +LL DEP + LD + ++ +M
Sbjct: 140 --KDKLKVSGLS----LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMV 193
Query: 174 EL 175
EL
Sbjct: 194 EL 195
|
Length = 261 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 6e-09
Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGGE+ RL+ A LL +P LLL DEPT LD S L ++E TV+ H
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSH- 125
Query: 190 PSSELIDMF-DKIILL 204
+D KII L
Sbjct: 126 -DRYFLDQVATKIIEL 140
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 7e-09
Identities = 67/216 (31%), Positives = 104/216 (48%), Gaps = 29/216 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G VAI+G SG+GKSTLL L L + G + +G+ + G R G + Q+
Sbjct: 479 GEFVAIVGPSGSGKSTLLRLL---LGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQN 535
Query: 69 -DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL---INSLLIELGLMNSQHTRIGSSSI 124
L S S ++E++ A L LD +A + L I ++ +G+ HT I
Sbjct: 536 GRLMSGS--IFENIAGGAPLTLDEAWEAARMAGLAEDIRAM--PMGM----HTVISEGGG 587
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
T LSGG+R+RL A L+ P +LL DE T+ LD+ + + ++ E + K T +
Sbjct: 588 T----LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA----IVSESLERLKVTRI 639
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ I D+I +L R G+ D +A
Sbjct: 640 VIAHRLST--IRNADRIYVLDAGRVVQQGTYDELMA 673
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-09
Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 41/208 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G + I+G +GAGKSTL+ AL R + +G I ++G + RS+ + Q
Sbjct: 34 GEKIGIVGRTGAGKSTLILALF-RFLE--AEEGKIEIDGIDISTIPLEDLRSSLTIIPQ- 89
Query: 69 DLFSPSLTVYEHLYFMALLK--LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
P+L F ++ LD + Y + +L + G +N
Sbjct: 90 ---DPTL-------FSGTIRSNLDPFDE-YSDEEIYGALRVSEGGLN------------- 125
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LS G+R+ L A LL P +L+ DE T +D + + + + +RE + T+L
Sbjct: 126 ---LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT--NSTILTI 180
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGS 214
H+ + +ID +DKI+++
Sbjct: 181 AHRLRT-IID-YDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 7e-09
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 16/210 (7%)
Query: 13 GTLVAIMGASGAGKSTLLAAL--SQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
G +V ++GA+GAGK+TLL L R I+ + R A + +
Sbjct: 31 GEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR 90
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
+TV E+L R + +RI + L L + R G+ +
Sbjct: 91 VFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRL--HERRIQRAGT--------M 138
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGGE++ L+ L++ P LLL DEP+ GL ++ + +L Q L + Q
Sbjct: 139 SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFL--VEQN 196
Query: 191 SSELIDMFDKIILLADSRTAFIGSKDAALA 220
+++ + + D+ +L + + DA LA
Sbjct: 197 ANQALKLADRGYVLENGHVVLEDTGDALLA 226
|
Length = 237 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 9e-09
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 18 IMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSP 73
I G SG GKSTLL ++ + G + G+ + +R + Q +P
Sbjct: 38 ITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIYRQQVSYCAQ----TP 90
Query: 74 SL---TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
+L TVY++L F + R + ++ L L ++ I + +I + L
Sbjct: 91 TLFGDTVYDNLIFPWQI----RNQQPDPAIFLDDL-ERFALPDT----ILTKNIAE---L 138
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGGE++R+S L P +LL DE T+ LD + + ++ ++ VL H
Sbjct: 139 SGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTH-- 196
Query: 191 SSELIDMFDKIILL 204
+ I+ DK+I L
Sbjct: 197 DKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 9e-09
Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 46/224 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G ++ G G+G++ L+ L D G+IR+NGK + + S
Sbjct: 289 GEILGFAGLVGSGRTELMNCL---FGVDKRAGGEIRLNGKDISPR--------------S 331
Query: 73 PSLTVYEHLYFMALLKLDRRVKAY-------QRIALINSLLI-----ELGLMNSQHTR-- 118
P V + MA + RR + Q +A+ SL +GL + +
Sbjct: 332 PLDAVKKG---MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRT 388
Query: 119 ---------IGSSSITQKVV-LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL 168
+ S+ Q + LSGG ++++ + L P +++ DEPT G+D + +++
Sbjct: 389 AENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEI 448
Query: 169 IRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 212
++MR+L K ++ + P E+I + D+I + + R I
Sbjct: 449 YKVMRQLADDGKVILMVSSELP--EIITVCDRIAVFCEGRLTQI 490
|
Length = 510 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 58/216 (26%), Positives = 88/216 (40%), Gaps = 26/216 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMY----QH 68
G+LV ++G +GAGK+TLL A++ L G + V G VE A Q
Sbjct: 29 GSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAGDDVEALSARAASRRVASVPQD 85
Query: 69 DLFSPSLTVYEHLYFMA----LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
S V + M + D + + +E + + + +
Sbjct: 86 TSLSFEFDV-RQVVEMGRTPHRSRFDTWTETDRAA-------VERAMERTGVAQFADRPV 137
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
T LSGGER+R+ A L +LL DEPT LD + + ++R L KT +
Sbjct: 138 TS---LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAV 193
Query: 185 CTIHQPSSELIDMF-DKIILLADSRTAFIGSKDAAL 219
IH +L + D+++LLAD R G L
Sbjct: 194 AAIH--DLDLAARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 39/185 (21%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDG----------DIRVNGKPVE-GKFRSAC 62
+ A++G SG+GKST L +L+ R+ D ID I +N K + + R
Sbjct: 47 KITALIGPSGSGKSTYLRSLN-RMNDT--IDIARVTGQILYRGIDINRKEINVYEMRKHI 103
Query: 63 GFMYQH-DLFSPSLTVYEHLYFMAL--------LKLDRRVKAYQRIALINSLLIELGLMN 113
G ++Q + F+ S +YE++ F AL LD V+ + A L +
Sbjct: 104 GMVFQRPNPFAKS--IYENITF-ALERAGVKDKKVLDEIVETSLKQA---------ALWD 151
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
+ S++T LSGG+++RL A + P +LL DEP + LD S +L M
Sbjct: 152 QVKDDLHKSALT----LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF 207
Query: 174 ELTSQ 178
EL
Sbjct: 208 ELKKN 212
|
Length = 267 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-08
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 38/210 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD--- 69
G + A++G SG+GKST++A L G + ++GKP+ Y+H
Sbjct: 40 GEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPIS---------QYEHKYLH 87
Query: 70 -----------LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
LF+ SL +++ + VK + A +S + EL T
Sbjct: 88 SKVSLVGQEPVLFARSLQ--DNIAYGLQSCSFECVKEAAQKAHAHSFISELAS--GYDTE 143
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+G LSGG+++R++ A L+ +P +L+ DE T+ LD+ S ++ + + +
Sbjct: 144 VGEKG----SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD--WP 197
Query: 179 RKKTVLCTIHQPSSELIDMFDKIILLADSR 208
++TVL H+ S ++ D+I++L R
Sbjct: 198 ERRTVLVIAHRLS--TVERADQILVLDGGR 225
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-08
Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 27/176 (15%)
Query: 17 AIMGASGAGKSTLLAALSQRLPDDCI----IDGDIRVNGKPVEG------KFRSACGFMY 66
A++G SG GKST L L++ +D I ++G+I ++G+ + + R G ++
Sbjct: 36 ALIGPSGCGKSTFLRCLNRM--NDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVF 93
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSL----LIELGLMNSQHTRIGSS 122
Q P +++E++ + RV + A + L L + R+ S
Sbjct: 94 QKPNPFPK-SIFENVAY------GLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHES 146
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
++ LSGG+++RL A L +P +LL DEP + LD + K+ ++ EL ++
Sbjct: 147 ALG----LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR 198
|
Length = 253 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-08
Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 27/194 (13%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGKPVEG------KFRSACGF 64
++ A++G SG GKST L L+ R+ D IDG + ++G+ + + R G
Sbjct: 72 SVTALIGPSGCGKSTFLRCLN-RMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGM 130
Query: 65 MYQHDLFSPSLTVYEHLYFMA----------LLKLDRRVKAYQRIALINSLLIELGLMNS 114
++Q P ++ E++ + L +L R L+ L + L +
Sbjct: 131 VFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE 189
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
+ R+ +++ LSGG+++RL A L DP ++L DEP + LD + SK+ ++ E
Sbjct: 190 VNDRLDDNALG----LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEE 245
Query: 175 LTSQRKKTVLCTIH 188
L + TV+ H
Sbjct: 246 LAEEY--TVVVVTH 257
|
Length = 305 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 32/203 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEGKFRSACGFMYQH- 68
G +VA++G SG+GKST+ AAL Q L P G + ++G P+ + ++++
Sbjct: 506 PGEVVALVGPSGSGKSTV-AALLQNLYQPTG----GQVLLDGVPLV---QYDHHYLHRQV 557
Query: 69 -------DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
LFS S+ E++ + D + A + A + ++E N T +G
Sbjct: 558 ALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIMEF--PNGYDTEVGE 613
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGG+++R++ A L+ P +L+ DE T+ LD+ ++++E S+ +
Sbjct: 614 KG----SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECE----QLLQESRSRASR 665
Query: 182 TVLCTIHQPSSELIDMFDKIILL 204
TVL H+ S ++ D+I++L
Sbjct: 666 TVLLIAHRLS--TVERADQILVL 686
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 25/205 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
+G VA++G SG+GKST+ A L R D I +G+I ++G + R+ + Q
Sbjct: 368 AGKTVALVGRSGSGKSTI-ANLLTRFYD--IDEGEILLDGHDLRDYTLASLRNQVALVSQ 424
Query: 68 H-DLFSPSLT---VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+ LF+ ++ Y + +++ + + IN + + GL T IG +
Sbjct: 425 NVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKM--DNGL----DTVIGENG 478
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
V+LSGG+R+R++ A LL D +L+ DE T+ LD+ S + + EL Q+ +T
Sbjct: 479 ----VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTS 532
Query: 184 LCTIHQPSSELIDMFDKIILLADSR 208
L H+ S+ I+ D+I+++ D
Sbjct: 533 LVIAHRLST--IEKADEILVVEDGE 555
|
Length = 582 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 24/212 (11%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQHDLF 71
I+G SG+GKSTL L G+I +NG ++ R ++ Q + +
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQ-EPY 558
Query: 72 SPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLL--IELGLMNSQHTRIGSSSITQKV 128
S ++ E+L A + + + A IA I + + LG T + +
Sbjct: 559 IFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGY----QTELSEEGSS--- 611
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
+SGG+++R++ A LLTD +L+ DE T+ LD+ + K++ + L KT++ H
Sbjct: 612 -ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ---DKTIIFVAH 667
Query: 189 QPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
+ S + DKII+L + GS D L
Sbjct: 668 RLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-08
Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 24/186 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCIID-GDIRVNGKPVEGKF----RSACGFMY 66
G AI+G +G+GKSTL+ ++ L P + DI + K + K+ R G ++
Sbjct: 33 GKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHK-TKDKYIRPVRKRIGMVF 91
Query: 67 Q---HDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
Q LF ++ E ++ K++ VK Y + LL++LG + S
Sbjct: 92 QFPESQLFEDTVE-REIIFGPKNFKMNLDEVKNYA-----HRLLMDLGFSRD----VMSQ 141
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
S Q +SGG+ ++++ + L +P +++ DEPT GLD S +++R+++ L + KT
Sbjct: 142 SPFQ---MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKT 198
Query: 183 VLCTIH 188
++ H
Sbjct: 199 IILVSH 204
|
Length = 286 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 25/180 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAAL-SQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
+G VA+ G SGAGKSTLL +L + LPD G I V EG + + L
Sbjct: 33 AGECVALSGPSGAGKSTLLKSLYANYLPDS----GRILVRH---EGAWVDLAQASPREVL 85
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-HTRIGSS----SIT 125
T+ Y L++ RV A + ++ L+E G+ R +I
Sbjct: 86 EVRRKTIG---YVSQFLRVIPRVSA---LEVVAEPLLERGVPREAARARARELLARLNIP 139
Query: 126 QKV------VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
+++ SGGE++R++ A + D +LL DEPT LD+ + ++ ++ E ++
Sbjct: 140 ERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARG 199
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 31/178 (17%)
Query: 17 AIMGASGAGKSTLLAALS--------QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 68
A +G SG GKSTLL + QR + ++DG+ + K R+ G ++Q
Sbjct: 43 AFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQK 102
Query: 69 DLFSPSLTVYEHLYFMALL-------KLDRRV-KAYQRIALINSLLIELGLMNSQHTRIG 120
P +++Y+++ F L ++D RV A + AL N + ++
Sbjct: 103 PTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV----------KDKLH 151
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
S + LSGG+++RL A + P +LL DEP + LD S ++ ++ EL
Sbjct: 152 QSGYS----LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQD 205
|
Length = 260 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 3e-08
Identities = 48/188 (25%), Positives = 93/188 (49%), Gaps = 27/188 (14%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-------------GKFRSA 61
+ AI+G SG GKST L L+ R+ + ++ ++RV G+ VE + R
Sbjct: 35 VTAIIGPSGCGKSTFLKCLN-RMNE---LESEVRVEGR-VEFFNQNIYERRVNLNRLRRQ 89
Query: 62 CGFMYQHDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
++ P ++VY+++ Y + ++ +++ ++ S L + L + +I
Sbjct: 90 VSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEID---DIVESALKDADLWDEIKHKIH 145
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
S++ LSGG+++RL A L P +LL DEP GLD ++ K+ +++ L + +
Sbjct: 146 KSALD----LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE 201
Query: 181 KTVLCTIH 188
T++ H
Sbjct: 202 LTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-08
Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 58/175 (33%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
+ ++G SG GKSTL + G+I GK +
Sbjct: 42 LGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDI--------------------- 77
Query: 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV------ 129
++ +R + LL ++GL ++ +
Sbjct: 78 ---------------TKLSKEERRERVLELLEKVGL-------------PEEFLYRYPHE 109
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+R+R+ A L +P L++ DEP + LD ++++ ++++L + T L
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYL 164
|
Length = 268 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 34/216 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL---PDDCIIDGDIRVNGKPVEGKF-RSACGFMYQ- 67
G V ++G +G+GKSTL+ L+ L IIDG + + K V+ R G ++Q
Sbjct: 33 GEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDG-VDITDKKVKLSDIRKKVGLVFQY 91
Query: 68 --HDLFSPSLTVYEHLYF----MALLK--LDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
+ LF T+ + + F + L + ++ RVK I +GL
Sbjct: 92 PEYQLFEE--TIEKDIAFGPINLGLSEEEIENRVKRAMNI---------VGL--DYEDYK 138
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
S LSGG+++R++ A + +P +L+ DEPT GLD +++ ++EL +
Sbjct: 139 DKSPFE----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY 194
Query: 180 KKTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGS 214
T++ H S E + D+II++ + G+
Sbjct: 195 NMTIILVSH--SMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-08
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 20/177 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGK--------PVEGKFRSA 61
T+ A +G SG GKST L L+ R+ D C + G I ++G+ VE R+
Sbjct: 45 KTVTAFIGPSGCGKSTFLRCLN-RMNDTIDGCRVTGKITLDGEDIYDPRLDVVE--LRAR 101
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
G ++Q P ++YE++ + + R KA + SL + GL R+
Sbjct: 102 VGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLR-KAGLWEEVKDRLHE 159
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
LSGG+++RL A + P ++L DEP + LD + +K+ ++ EL
Sbjct: 160 PGTG----LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQN 212
|
Length = 267 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 4e-08
Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 58/235 (24%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTLLAALS-----QRLPDDCIIDGDIRVNGKPV--- 54
L G +LS G+ A++G +GAGKSTLL L+ QR G ++V G+ V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR--------GRVKVMGREVNAE 72
Query: 55 -EGKFRSACGFMYQ---HDLFSPSLTVYEHLYF----MALLK--LDRRVKAYQRIALINS 104
E RS G ++Q +F S TV++ + F M L K ++RRV+ AL
Sbjct: 73 NEKWVRSKVGLVFQDPDDQVF--SSTVWDDVAFGPVNMGLDKDEVERRVEE----ALKAV 126
Query: 105 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
+ + H LS G++KR++ A L DP +++ DEP LD
Sbjct: 127 RMWDFRDKPPYH-------------LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173
Query: 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF----DKIILLADSRTAFIGSK 215
L+ ++ L + KTV+ H +D+ D++I+L + R G K
Sbjct: 174 QETLMEILDRL-HNQGKTVIVATHD-----VDLAAEWADQVIVLKEGRVLAEGDK 222
|
Length = 274 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-08
Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 29/189 (15%)
Query: 15 LVAIMGASGAGKSTLLAALSQ--------RLPDDCIIDGD----IRVNGKPVEGKFRSAC 62
+ A++G SG GKST L ++ + I+ D + P+E + R +
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISM 103
Query: 63 GFMYQHDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRI--ALINSLLIELGLMNSQHTRI 119
F + + F S ++E++ Y + + + RR +R+ AL N+ L + R+
Sbjct: 104 VFQ-KPNPFPKS--IFENVAYGLRIRGVKRRSILEERVENALRNA-----ALWDEVKDRL 155
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
G + LSGG+++RL A L TDP +LL DEPT+ LD + + + ++ +L +
Sbjct: 156 GDLAFN----LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL--KN 209
Query: 180 KKTVLCTIH 188
K T+L H
Sbjct: 210 KVTILIVTH 218
|
Length = 265 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 4e-08
Identities = 66/250 (26%), Positives = 108/250 (43%), Gaps = 48/250 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--CGFMYQHDL 70
G L+A+ G++G+GKS+LL +I G++ +P EGK + + F Q
Sbjct: 452 GQLLAVAGSTGSGKSSLLM----------MIMGEL----EPSEGKIKHSGRISFSPQTSW 497
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM---NSQHTRIGSSSITQK 127
P T+ +++ F L D Y+ ++I + +E + T +G IT
Sbjct: 498 IMPG-TIKDNIIFG--LSYDE----YRYTSVIKACQLEEDIALFPEKDKTVLGEGGIT-- 548
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCT 186
LSGG+R R+S A + D L L D P T LD + ++ + +L S + + ++ +
Sbjct: 549 --LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS 606
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVT 246
E + DKI+LL + F G+ F E Q DF L +
Sbjct: 607 ----KLEHLKKADKILLLHEGVCYFYGT------FSELQA-------KRPDFSSLLLGLE 649
Query: 247 TNDELSSRRR 256
D S+ RR
Sbjct: 650 AFDNFSAERR 659
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 5e-08
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
T+IGS LSGG ++++ LLT P +L+ DEPT G+D + ++ +++
Sbjct: 384 GHRTQIGS--------LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA 435
Query: 174 ELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 212
EL + K ++ + P EL+ + D+I+++++ A I
Sbjct: 436 ELAKKDKGIIIISSEMP--ELLGITDRILVMSNGLVAGI 472
|
Length = 491 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 5e-08
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 19/171 (11%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCI----IDGDIRVNGKPVEG------KFRSACGF 64
+ A++G SG GKST L ++++ +D I +G+I G + R G
Sbjct: 49 VTALIGPSGCGKSTFLRSINRM--NDLIPSARSEGEILYEGLNILDSNINVVNLRREIGM 106
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
++Q P ++Y ++ AL R K+ + SL + L + R+ SS++
Sbjct: 107 VFQKPNPFPK-SIYNNITH-ALKYAGERRKSVLDEIVEESL-TKAALWDEVKDRLHSSAL 163
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+ LSGG+++RL A L PA+LL DEP + LD S +K+ ++ EL
Sbjct: 164 S----LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL 210
|
Length = 268 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (125), Expect = 5e-08
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 15 LVAIMGASGAGKSTLLAALSQ--------RLPDDCIIDGDIRVNGKPVEGKFRSACGFMY 66
+ AI+G SG GKSTLL AL++ RL ++D + + R G ++
Sbjct: 32 ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVF 91
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSIT 125
Q P ++++++ F + A R+ ++ L + L + + S +
Sbjct: 92 QQPNPFPK-SIFDNVAFGPRM---LGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLA 147
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
LSGG+++RL A L +P ++L DEP + LD S ++ +M+EL
Sbjct: 148 ----LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL 193
|
Length = 251 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 6e-08
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 20/213 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF-----RSACGFMYQ 67
G V + G +GAGKSTL+ LS P DG+I +G P++ R+ ++Q
Sbjct: 27 GECVGLCGENGAGKSTLMKILSGVYPHGT-WDGEIYWSGSPLKASNIRDTERAGIVIIHQ 85
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL-INSLLIELGLMNSQHTRIGSSSITQ 126
P L+V E+++ + L AY + L +LL EL L TR
Sbjct: 86 ELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGD---- 141
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
GG+++ + A L LL+ DEP++ L L+ ++R+L + V C
Sbjct: 142 ---YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL---KAHGVACV 195
Query: 187 -IHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218
I +E+ + D I ++ D + + +KD +
Sbjct: 196 YISHKLNEVKAVCDTICVIRDGQ--HVATKDMS 226
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-08
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 41/159 (25%)
Query: 13 GTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQ-HDL 70
G +V ++G +GAGKSTL ++ Q PD G I++ G+ V+ ++ Q D
Sbjct: 348 GGIVGVIGPNGAGKSTLFRMITGQEQPDS----GTIKI-GETVK------LAYVDQSRDA 396
Query: 71 FSPSLTVYEH----LYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 122
P+ TV+E L + L K + +AY +G N Q ++G
Sbjct: 397 LDPNKTVWEEISGGLDIIQLGKREVPSRAY------------VGRFNFKGSDQQKKVG-- 442
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LSGGER R+ A L + +LL DEPT LD
Sbjct: 443 ------QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 7e-08
Identities = 67/263 (25%), Positives = 125/263 (47%), Gaps = 41/263 (15%)
Query: 13 GTLVAIMGASGAGKST---LLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH- 68
G VAI+G +G+GKST +L L + + IDG I ++ + ++ + R G ++Q+
Sbjct: 35 GEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG-ITISKENLK-EIRKKIGIIFQNP 92
Query: 69 DLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
D TV + + F L+ ++V + +I+ L ++G M + +
Sbjct: 93 DNQFIGATVEDDIAF----GLENKKVPPKKMKDIIDDLAKKVG-MEDYLDKEPQN----- 142
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+++R++ A+ L +P +++ DE T+ LD ++ ++M +L RKKT++
Sbjct: 143 --LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISIT 200
Query: 188 HQPSSELIDM-----FDKIILLADSRTAFIGSKDAALA---FLESQGYPCPYGYNPADFL 239
H DM DK+I+ ++ + G L LE P+ Y +
Sbjct: 201 H-------DMDEAILADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSK-K 252
Query: 240 IKSLAVTTN-DELSSRRRLKRIC 261
+K + T N +EL +++IC
Sbjct: 253 LKGIDPTYNEEEL-----IEQIC 270
|
Length = 271 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 7e-08
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 40/205 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G LVAI+G G+GKS+LL+AL L + G + V G ++ Q
Sbjct: 31 GELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPGS---------IAYVSQ----E 74
Query: 73 P---SLTVYEHLYFMALLKLDRRVKAYQRI----ALINSL-LIELGLMNSQHTRIGSSSI 124
P + T+ E++ F +R Y+++ AL L ++ G + T IG I
Sbjct: 75 PWIQNGTIRENILFGKPFDEER----YEKVIKACALEPDLEILPDGDL----TEIGEKGI 126
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKTV 183
LSGG+++R+S A + +D + L D+P + +D+ + + L K +
Sbjct: 127 N----LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRI 182
Query: 184 LCTIHQPSSELIDMFDKIILLADSR 208
L T HQ +L+ D+I++L + R
Sbjct: 183 LVT-HQL--QLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 7e-08
Identities = 63/261 (24%), Positives = 128/261 (49%), Gaps = 32/261 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL-PDD-----CIIDGDIRVNGKPVEGKFRSACGFM 65
G+ A++G +G+GKST+ ++ L PDD +DG I + K V R G +
Sbjct: 32 RGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLTAKTV-WDIREKVGIV 89
Query: 66 YQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+Q+ D TV + + F L+ +R V + I ++ +L ++G+++ +
Sbjct: 90 FQNPDNQFVGATVGDDVAFG--LE-NRAVPRPEMIKIVRDVLADVGMLDYIDS------- 139
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+ LSGG+++R++ A L +P +++ DE T+ LD ++++++R+L + TV+
Sbjct: 140 -EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVI 198
Query: 185 CTIHQPSSELID---MFDKIILLADSRTAFIGSKD---AALAFLESQGYPCPYGYNPADF 238
H ID M D++++L D + GS + + L+ G P+ Y +
Sbjct: 199 SITHD-----IDEANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNK 253
Query: 239 LIKSLAVTTNDELSSRRRLKR 259
L + ++ E+++ +L +
Sbjct: 254 LKEK-GISVPQEINTEEKLVQ 273
|
Length = 282 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 9e-08
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 36/194 (18%)
Query: 12 SGTLVAIMGASGAGKSTLLAAL---------SQRLPDDCIIDGDIRVNGKPVEGKFRSAC 62
SG+ VAI+G +G+GKSTLL L + + + I G KP+ R
Sbjct: 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPL----RKKV 87
Query: 63 GFMYQ---HDLFSPSLTVYEHLYF----MALLKLDRRVKAYQRIALINSLLIELGLMNSQ 115
G ++Q H LF TV + + F + + D + KA + I L+ GL
Sbjct: 88 GIVFQFPEHQLFEE--TVEKDICFGPMNFGVSEEDAKQKAREMIELV-------GLPEEL 138
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
R LSGG+ +R++ A L +P +L+ DEPT GLD +++ M +L
Sbjct: 139 LAR-------SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKL 191
Query: 176 TSQRKKTVLCTIHQ 189
++ T + H
Sbjct: 192 HKEKGLTTVLVTHS 205
|
Length = 290 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 1e-07
Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Query: 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 133
++++YE++ F VK + A I+ IE L N T +G + LSGG
Sbjct: 1309 NMSIYENIKFGKEDATREDVKRACKFAAIDEF-IE-SLPNKYDTNVGPYGKS----LSGG 1362
Query: 134 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 193
+++R++ A LL +P +LL DE T+ LDS S + + + ++ + KT++ H+ +S
Sbjct: 1363 QKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS- 1421
Query: 194 LIDMFDKIILLADSRTAFIGSKDAALAFLESQG 226
I DKI++ + D +F+++ G
Sbjct: 1422 -IKRSDKIVVF--------NNPDRTGSFVQAHG 1445
|
Length = 1466 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 1e-07
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 46/206 (22%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G ++ I+G +G GK+T L+ L PD+ +D +++++ KP Q+
Sbjct: 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKP-------------QYIKP 411
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
TV + L + D +Y + +I L +E R+ ++ LS
Sbjct: 412 DYDGTVEDLLRSIT----DDLGSSYYKSEIIKPLQLE---------RLLDKNVKD---LS 455
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDS---FSASKLI-RMMRELTSQRKKTVLCTI 187
GGE +R++ A L D L L DEP+ LD + +K I R+ E R+ T L
Sbjct: 456 GGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE----REATALVVD 511
Query: 188 HQPSSELIDMFDKIILLADSRTAFIG 213
H I M D ++D F G
Sbjct: 512 HD-----IYMID---YISDRLMVFEG 529
|
Length = 590 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 1e-07
Identities = 49/211 (23%), Positives = 92/211 (43%), Gaps = 27/211 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK--FRSACGFMYQHDL 70
G LVA++G G GKS+LL+AL + VEG + + ++ Q
Sbjct: 664 GALVAVVGQVGCGKSSLLSALLAEM--------------DKVEGHVHMKGSVAYVPQQAW 709
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
+ ++ E++ F L + + AL+ L I L + T IG + L
Sbjct: 710 IQ-NDSLRENILFGKALNEKYYQQVLEACALLPDLEI---LPSGDRTEIGEKGVN----L 761
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQ 189
SGG+++R+S A + ++ + L D+P + +D+ + ++ + KT + H
Sbjct: 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHG 821
Query: 190 PSSELIDMFDKIILLADSRTAFIGSKDAALA 220
S + D II+++ + + +GS L
Sbjct: 822 IS--YLPQVDVIIVMSGGKISEMGSYQELLQ 850
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-07
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Query: 14 TLVAIMGASGAGKSTLLAALSQR---LPDDCIIDGDIRVNGKPVEGK------FRSACGF 64
++ A +G SG GKST+L L++ +P ++G++ ++G+ + G R G
Sbjct: 31 SVTAFIGPSGCGKSTVLRTLNRMHEVIPG-ARVEGEVLLDGEDLYGPGVDPVAVRRTIGM 89
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
++Q P++++ +++ +A LKL+ L+ L L N R+
Sbjct: 90 VFQRPNPFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGG 147
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
LSGG+++RL A + +P +LL DEP + LD S + ++ EL
Sbjct: 148 G----LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQD 197
|
Length = 258 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 23/174 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALS-QRLPD--DCIIDG---DIRVNGKPVEG-KFRSACGF 64
G + ++G SGAGKS+LL L+ +P I G D + R G
Sbjct: 27 QGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGM 86
Query: 65 MYQHDLFSPSLTVYEHLYF--MALLKLDRRVKAYQRIALINSL-LIELGLMNSQHTRIGS 121
++Q P LTV ++L +L L + + L+ L L H
Sbjct: 87 VFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLH----- 141
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
LSGG+++R++ A L+ +P +LL DEPT LD ++++ ++REL
Sbjct: 142 --------LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL 187
|
Length = 242 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 22/214 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G ++ I G +G+GKSTLL +L QR D + +GDIR + P+ +RS + Q
Sbjct: 341 GQMLGICGPTGSGKSTLL-SLIQRHFD--VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397
Query: 69 D-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE-LGLMNSQHTRIGSSSITQ 126
LFS TV ++ AL + D + + +A + S+ + L L T +G +
Sbjct: 398 PFLFSD--TVANNI---ALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGE----R 448
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
V+LSGG+++R+S A LL + +L+ D+ + +D + +++ +R+ R TV+ +
Sbjct: 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGR--TVIIS 506
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ L + +I+++ A G+ D
Sbjct: 507 AHRLSA-LTEA-SEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 32/209 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMY 66
G + A++G +GAGKSTL+ LS G I +N + G +Y
Sbjct: 30 PGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIY 86
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRV---------KAYQRIALINSLLIELGLMNSQHT 117
Q LTV E+LY L ++V + R A+ +L+ +GL
Sbjct: 87 QELSVIDELTVLENLYIGRHLT--KKVCGVNIIDWREMRVRAAM---MLLRVGLKVDLDE 141
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
++ + SI+ K + L A L+ D +++ DEPT+ L + L +M +L
Sbjct: 142 KVANLSISHK--------QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK 193
Query: 178 QRKKTVLCTIHQPSSELIDMFDKIILLAD 206
+ V I +E+ + D+ ++ D
Sbjct: 194 EGTAIVY--ISHKLAEIRRICDRYTVMKD 220
|
Length = 510 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 40/203 (19%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
G + ++G +GAGKSTLL ++ +D + +P G G++ Q
Sbjct: 29 FPGAKIGVLGLNGAGKSTLLRIMAG-------VDKEFNGEARPAPG---IKVGYLPQEPQ 78
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIAL--------INSLLIELGLMNSQHTRIGSS 122
P+ TV E++ + ++ + + I+ +++LL E + +
Sbjct: 79 LDPTKTVRENV-EEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAW 137
Query: 123 SITQKV-----------------VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 165
+ +K+ LSGGER+R++ LL+ P +LL DEPT LD+ S
Sbjct: 138 DLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESV 197
Query: 166 SKLIRMMRELTSQRKKTVLCTIH 188
+ L + ++E TV+ H
Sbjct: 198 AWLEQHLQEY----PGTVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 29/176 (16%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM--Y-- 66
+G + A++G +GAGKSTL+ ++ +P D G + + G P + + Y
Sbjct: 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLV 91
Query: 67 -QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
Q L P+L+V E++ L L +R + Q++ LL LG + GS +
Sbjct: 92 PQEPLLFPNLSVKENI----LFGLPKRQASMQKMK---QLLAALGCQLDLDSSAGSLEVA 144
Query: 126 -QKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+++V L G L+ D +L+ DEPT L +L +REL +Q
Sbjct: 145 DRQIVEILRG-----------LMRDSRILILDEPTASLTPAETERLFSRIRELLAQ 189
|
Length = 510 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMYQHD 69
G +AI+G +G+GKSTL L+ + G+I +N P+ FRS M D
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEILINDHPLHFGDYSFRSKRIRMIFQD 95
Query: 70 ---LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
+P L + + L F L+L+ ++ QR I L +GL+ H
Sbjct: 96 PNTSLNPRLRIGQILDFP--LRLNTDLEPEQRRKQIFETLRMVGLL-PDHANYYPH---- 148
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+L+ G+++R++ A L+ P +++ DE LD S+LI +M EL
Sbjct: 149 --MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLEL 195
|
Length = 267 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 20/113 (17%)
Query: 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 134
+TV E L F A +IA L+++GL + ++G + T LSGGE
Sbjct: 784 MTVEEALEFFE---------AIPKIARKLQTLVDVGL---GYIKLGQPATT----LSGGE 827
Query: 135 RKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+R+ A EL T L + DEPTTGL KL+ ++ L + TV+
Sbjct: 828 AQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVI 879
|
Length = 935 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-07
Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 21/212 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC-------GFM 65
G + AIMG SG GK+TLL + ++ D G+I +G+ + RS +
Sbjct: 33 GKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSML 89
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+Q + V++++ + + L LL +M + + ++
Sbjct: 90 FQSGALFTDMNVFDNVAY----------PLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL 139
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGG +R + A + +P L++ DEP G D + L++++ EL S T +
Sbjct: 140 MPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVV 199
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217
H E++ + D ++AD + GS A
Sbjct: 200 VSHD-VPEVLSIADHAYIVADKKIVAHGSAQA 230
|
Length = 269 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQHDLF 71
VA++G +G+GKSTL + L P +G+IR++G+P+ R M Q D
Sbjct: 370 VALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVA-MVQQDPV 425
Query: 72 SPSLTVYEHLYFMALLKLDRRV---KAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQ 126
+ T F+A + L R + + +Q AL L EL L + +T +G Q
Sbjct: 426 VLADT------FLANVTLGRDISEEQVWQ--ALETVQLAELARSLPDGLYTPLGE----Q 473
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LS G+++ L+ A L+ P +L+ DE T +DS + + + + + R+ T L
Sbjct: 474 GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAV---REHTTLVV 530
Query: 187 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
I S +++ D I++L + G+ LA
Sbjct: 531 IAHRLSTIVEA-DTILVLHRGQAVEQGTHQQLLA 563
|
Length = 592 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 3e-07
Identities = 48/200 (24%), Positives = 96/200 (48%), Gaps = 34/200 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLP---DDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G+LVAI+G +G GK++L++A+ L ++ R + ++ Q
Sbjct: 643 GSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV--------------IRGSVAYVPQVS 688
Query: 70 -LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
+F+ TV E++ F + + +R +A AL + L + G T IG +
Sbjct: 689 WIFNA--TVRENILFGSDFESERYWRAIDVTALQHDLDLLPG---RDLTEIGERGVN--- 740
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMRELTSQRKKTVLCT 186
+SGG+++R+S A + ++ + + D+P + LD+ A ++ M EL + + V
Sbjct: 741 -ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQ 799
Query: 187 IHQPSSELIDMFDKIILLAD 206
+H + + D+IIL+++
Sbjct: 800 LH-----FLPLMDRIILVSE 814
|
Length = 1495 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 46/210 (21%)
Query: 12 SGTLVAIMGASGAGKST---LLAALSQRLPDDCIIDGDIRVNGKPVE--GKFRSACGF-M 65
G VA++G SG+GKST L+A L Q G+I +G P E + A M
Sbjct: 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPW------SGEILFDGIPREEIPREVLANSVAM 557
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI-----------NSLLIELGLMNS 114
D+F TV ++L D + + A I ++ L E G N
Sbjct: 558 VDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG-AN- 615
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
LSGG+R+RL A L+ +P++L+ DE T+ LD + + +R
Sbjct: 616 ---------------LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR- 659
Query: 175 LTSQRKKTVLCTIHQPSSELIDMFDKIILL 204
+R T + H+ S+ I D+II+L
Sbjct: 660 ---RRGCTCIIVAHRLST--IRDCDEIIVL 684
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 37/191 (19%)
Query: 4 LELTGAALS-GTLVAIMGASGAGKSTLLAALSQRL-PD--DCIIDGDIRVNGKP--VEGK 57
LE+ G ++S ++ I+G +G GK+T + L+ L PD D I+ D V+ KP ++
Sbjct: 15 LEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIKAD 73
Query: 58 FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
+ + L S + Y H YF + + L IE +++ +
Sbjct: 74 YEGTVRDL----LSSITKDFYTHPYF--------------KTEIAKPLQIE-QILDREVP 114
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
LSGGE +R++ A L D + L DEP+ LD +++R
Sbjct: 115 E-----------LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE 163
Query: 178 QRKKTVLCTIH 188
+KT H
Sbjct: 164 NNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 4e-07
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 14/83 (16%)
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI- 187
VLSGGE++RL+FA LL P + DE T+ LD S +L ++++EL T+
Sbjct: 91 VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--------GITVI 142
Query: 188 ---HQPSSELIDMFDKIILLADS 207
H+PS L D+++ L
Sbjct: 143 SVGHRPS--LWKFHDRVLDLDGE 163
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-07
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 25/160 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-----FRSACGFMYQ 67
G L I+G +GAGK+T++ ++ + D +G + G + G R+ G +Q
Sbjct: 28 GELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQ 84
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKA--YQRI-----ALINSLLIELGLMNSQHTRIG 120
+LTV+E+L L D+ V A + R+ I +L +GL + G
Sbjct: 85 KPTVFENLTVFENL--ELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG 142
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160
LS G+++ L L+ DP LLL DEP G+
Sbjct: 143 L--------LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 31/182 (17%)
Query: 12 SGTLVAIMGASGAGKSTL---LAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSA 61
SG VA++G SG GKSTL L L P G++ G+P+ FR
Sbjct: 37 SGETVALLGRSGCGKSTLARLLVGLES--PSQ----GNVSWRGEPLAKLNRAQRKAFRRD 90
Query: 62 CGFMYQHDL--FSPSLTVYEHLY--FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
++Q + +P TV E + LL LD+ +R+A + +L + L +S
Sbjct: 91 IQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA----ERLARASEMLRAVDLDDSVLD 146
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
+ LSGG+ +R+ A L +P LL+ DE + LD + +IR++++L
Sbjct: 147 KRPPQ-------LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ 199
Query: 178 QR 179
Q
Sbjct: 200 QF 201
|
Length = 268 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 5e-07
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 33/198 (16%)
Query: 8 GAALS---GTLVAIMGASGAGKSTLLAALSQRLPDDC-----IIDGDIRVN----GKPVE 55
A+L G + +MG SG+GKSTLL A++ L + DGD V+
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVN-GLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 56 GKFRSACGFM-YQHDLFSPSLTVYEHLYF---MA-LLKLDRRVKAYQRIALINSLLIELG 110
+ R+ M +Q P TV E++ F M + K +RR + +++ L+ G
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELV-------G 153
Query: 111 LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170
L + G LSGG ++R+ A T+ +LL DEP + LD ++L
Sbjct: 154 LAQWADRKPGE--------LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQD 205
Query: 171 MMRELTSQRKKTVLCTIH 188
+ EL S+ KKT++ H
Sbjct: 206 ELLELQSKLKKTIVFVSH 223
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-07
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 130 LSGGERKRLSFATEL---LTDPA-LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGGE++ + A L P L + DE GLD L + E + V+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEH-LVKGAQVIV 136
Query: 186 TIHQPSSELIDMFDKII 202
H P EL ++ DK+I
Sbjct: 137 ITHLP--ELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-07
Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 38/221 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF-----RSACGFMYQ 67
G +V++ G +GAGKSTL+ LS P +G+I G+ ++ R+ ++Q
Sbjct: 31 GEIVSLCGENGAGKSTLMKVLSGVYPHGT-YEGEIIFEGEELQASNIRDTERAGIAIIHQ 89
Query: 68 HDLFSPSLTVYEHLY---------FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
L+V E+++ M + R + LL +L L + T
Sbjct: 90 ELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQK---------LLAQLKLDINPATP 140
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+G+ L G+++ + A L LL+ DEPT L + L+ ++R+L
Sbjct: 141 VGN--------LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL--- 189
Query: 179 RKKTVLCT-IHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218
+ + C I +E+ + D I ++ D R IG++ AA
Sbjct: 190 KAHGIACIYISHKLNEVKAISDTICVIRDGRH--IGTRPAA 228
|
Length = 506 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 8e-07
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
Q + LSGGE +R++ A LL + L DEP+ LD R +R L+ + KKT L
Sbjct: 68 QYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV 127
Query: 186 TIH 188
H
Sbjct: 128 VEH 130
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-07
Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 24/196 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G +VA++G SGAGK+TLL + + R + VE + +
Sbjct: 409 GDVVAVVGQSGAGKTTLLRMILGAQKG--RGEEKYRPDSGKVEVPKNTVSALIPGEYEPE 466
Query: 73 -PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
+T+ EHL R A+ +L GL ++ R S LS
Sbjct: 467 FGEVTILEHL---------RSKTGDLNAAV--EILNRAGLSDAVLYRRKFSE------LS 509
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
G+++R A L P +LL DE LD +A ++ R + EL + T++ H+P
Sbjct: 510 TGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP- 568
Query: 192 SELIDMF--DKIILLA 205
E+ + D +IL+
Sbjct: 569 -EVGNALRPDTLILVG 583
|
Length = 593 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 9e-07
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE---GKFRSACGFMYQHD--- 69
+AI+G +G+GKSTL L+ + G++ ++ P+ +RS M D
Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPST 98
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
+P + + L F L+L+ ++ QR I L ++GL+ + +
Sbjct: 99 SLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPH-------M 149
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
L+ G+++RL A L+ P +++ DE LD S+LI +M EL
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLEL 195
|
Length = 267 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 9e-07
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 33/190 (17%)
Query: 13 GTLVAIMGASGAGKS-TLLAALSQRLPDDCIIDGDIRVNGKPVE-----GKF-------- 58
G ++A++G SG+GKS T AAL G + ++GKPV G+
Sbjct: 29 GRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNP 88
Query: 59 RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
RSA F+P T++ H A K L +L +GL N+ R
Sbjct: 89 RSA---------FNPLHTMHTH----ARETCLALGKPADDATLTAALE-AVGLENAA--R 132
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+ + +SGG +R+ A LL + ++ DEPTT LD + ++++ ++ + +
Sbjct: 133 VLKLYPFE---MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK 189
Query: 179 RKKTVLCTIH 188
R +L H
Sbjct: 190 RALGMLLVTH 199
|
Length = 254 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-07
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 21/108 (19%)
Query: 75 LTVYE-HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 133
+TV E + +F A+ + R+++ L ++GL + R+G + T LSGG
Sbjct: 791 MTVEEAYEFFEAVPSISRKLQ----------TLCDVGL---GYIRLGQPATT----LSGG 833
Query: 134 ERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
E +R+ A EL T L + DEPTTGL KL+ +++ L +
Sbjct: 834 EAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDK 881
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-07
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 42/217 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G + I G SGAGK++LL AL+ P G R++ F+ Q
Sbjct: 419 GERLLITGESGAGKTSLLRALAGLWPW-----GSGRISMPADSALL-----FLPQRPYLP 468
Query: 73 P-SLTVYEHLYFMALLKLDRRVKAYQRI------ALINSLLIELGL--MNSQHTRIGSSS 123
+L R Y A + ++L ++GL + +
Sbjct: 469 QGTL---------------REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWD 513
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
VLSGGE++RL+FA LL P + DE T+ LD + +L ++++E TV
Sbjct: 514 R----VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPD--ATV 567
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
+ H+P+ L + + + L D A
Sbjct: 568 ISVGHRPT--LWNFHSRQLELLDDAGGQNLKPPALPT 602
|
Length = 604 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 1e-06
Identities = 63/268 (23%), Positives = 122/268 (45%), Gaps = 44/268 (16%)
Query: 5 ELTGAALS---GTLVAIMGASGAGKSTLLAALSQRLPDDCI--IDGDIRVNGKPVEGK-- 57
+L G + S G V+I+G +G+GKST + RL D +G ++++G+ + +
Sbjct: 22 QLNGVSFSITKGEWVSIIGQNGSGKST-----TARLIDGLFEEFEGKVKIDGELLTAENV 76
Query: 58 --FRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS 114
R G ++Q+ D TV + + F ++ + + I ++ L+ + +++
Sbjct: 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGME---NQGIPREEMIKRVDEALLAVNMLDF 133
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
+ TR + LSGG+++R++ A + P +++ DE T+ LD +++R++ E
Sbjct: 134 K-TR-------EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHE 185
Query: 175 LTSQRKKTVLCTIHQ----PSSE--LIDMFDKIILLADSRTAFIGSKDAA---------- 218
+ + + TVL H SS+ L+ +II A F S+D
Sbjct: 186 IKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVPFSS 245
Query: 219 --LAFLESQGYPCPYGYNPADFLIKSLA 244
+ L G+ P Y D L++ LA
Sbjct: 246 NLMKDLRKNGFDLPEKYLSEDELVELLA 273
|
Length = 277 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-06
Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 42/193 (21%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIID----GDIRVNG------KPVEGKF-RSA 61
G + + G SGAGKSTLL + C I+ G I +G K E F R
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLI-------CGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLK------LDRRVKAYQRIALINSLLIELGLMNSQ 115
G ++Q TVY+++ ++ + RRV A L ++GL++
Sbjct: 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSA---------ALDKVGLLDKA 131
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+ LSGGE++R+ A ++ PA+LL DEPT LD + ++R+ E
Sbjct: 132 KNF--------PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF 183
Query: 176 TSQRKKTVLCTIH 188
++ TVL H
Sbjct: 184 -NRVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-06
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 22/164 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA-CGFMYQHDL 70
+G + + G +GAGK+TLL L+ L + G I+++GK RS ++
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVES---GQIQIDGKTATRGDRSRFMAYLGHLPG 92
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV- 129
L+ E+L+F+ L RR K AL +G + +V
Sbjct: 93 LKADLSTLENLHFLCGLH-GRRAKQMPGSAL---------------AIVGLAGYEDTLVR 136
Query: 130 -LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 172
LS G++KRL+ A L+ L L DEP LD + + RM+
Sbjct: 137 QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
|
Length = 214 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-06
Identities = 43/185 (23%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCII---DGDIRVNGKPVEG------KFRSACGF 64
++ A++G SG GKST + L+ R+ D +G I ++G + + R G
Sbjct: 30 SVTALIGPSGCGKSTFIRTLN-RMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGM 88
Query: 65 MYQHDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
++Q P ++++++ Y + + D +R+ L L + ++ S+
Sbjct: 89 VFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERV---EESLKAAALWDEVKDKLDKSA 144
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ LSGG+++RL A + P ++L DEP + LD S +K+ ++ +L + T+
Sbjct: 145 LG----LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL--KEDYTI 198
Query: 184 LCTIH 188
+ H
Sbjct: 199 VIVTH 203
|
Length = 250 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 38/205 (18%)
Query: 4 LELTGAALS-GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC 62
LE+ + G ++ I+G +G GK+T + L+ + D + D++V+ KP
Sbjct: 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKP--------- 407
Query: 63 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
Q+ TV + + ++ +Y + ++ L +E L+
Sbjct: 408 ----QYISPDYDGTVED--LLRSAIR-SAFGSSYFKTEIVKPLNLE-DLLERPVDE---- 455
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS---FSASKLIRMMRELTSQR 179
LSGGE +R++ A L + L L DEP+ LD +K+IR E
Sbjct: 456 -------LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIE---NN 505
Query: 180 KKTVLCTIHQPSSELIDMF-DKIIL 203
+KT L H +ID D++I+
Sbjct: 506 EKTALVVDHDIY--MIDYVSDRLIV 528
|
Length = 591 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 42/194 (21%), Positives = 70/194 (36%), Gaps = 60/194 (30%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
LV + G SG+GKSTL+ + +
Sbjct: 20 LNVLVVVTGVSGSGKSTLV-----------------------------NEGLYASGKARL 50
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV-VL 130
L + + + +L LI++GL G ++ QK+ L
Sbjct: 51 ISFLPKFSRNKLIFIDQL--------------QFLIDVGL--------GYLTLGQKLSTL 88
Query: 131 SGGERKRLSFATELL--TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
SGGE +R+ A+EL L + DEP+TGL ++L+ +++ L TV+ H
Sbjct: 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL-GNTVILIEH 147
Query: 189 QP-----SSELIDM 197
+ +ID
Sbjct: 148 NLDVLSSADWIIDF 161
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFM 65
G + I+G SG+GKS AL L + I G NG+ + K R+ M
Sbjct: 42 GETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISM 101
Query: 66 -YQHDLFS--PSLTVYEHLYFMALLKLDRRVKAYQRIALINSL-LIELGLMNSQHTRIGS 121
+Q + S P + V E L M +L L + + + A S+ +++ M R+
Sbjct: 102 IFQDPMTSLNPYMRVGEQL--MEVLMLHKGMSKAE--AFEESVRMLDAVKMPEARKRMKM 157
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
SGG R+R+ A LL P LL+ DEPTT LD ++++ ++ EL
Sbjct: 158 YPHE----FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL 207
|
Length = 330 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 43/217 (19%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDD--CIIDGDIRVNGKPVEGK-----FRSAC 62
G + ++G SG GK+T+L A PD ++DG + P E + F+S
Sbjct: 40 GEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQ-DITHVPAENRHVNTVFQS-- 94
Query: 63 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
+ LF P +TV+E++ F L++ + A I ++E L Q
Sbjct: 95 -----YALF-PHMTVFENVAFG--LRMQKTPAAE-----ITPRVME-ALRMVQLEEFAQR 140
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR-ELTS-QRK 180
Q LSGG+++R++ A ++ P +LL DE + LD KL + M+ EL + QRK
Sbjct: 141 KPHQ---LSGGQQQRVAIARAVVNKPKVLLLDESLSALD----YKLRKQMQNELKALQRK 193
Query: 181 ---KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
V T Q E + M D+I+++ D R G+
Sbjct: 194 LGITFVFVTHDQ--EEALTMSDRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54
+G +VA++G +G+GKSTLL A++ L G+I ++GK +
Sbjct: 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEILIDGKDI 63
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 33/213 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRS-----ACGFMY 66
G ++ + G GAG++ L+ L LP G + ++G V RS A G +Y
Sbjct: 277 KGEILGVSGLMGAGRTELMKVLYGALPRTS---GYVTLDGHEV--VTRSPQDGLANGIVY 331
Query: 67 -----QHDLFSPSLTVYEHLYFMALLKLDR---RVKAYQRIALINSLLIELGLMNSQHTR 118
+ D ++V E++ AL R +K ++ + L N
Sbjct: 332 ISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFI---RLFN----- 383
Query: 119 IGSSSITQKV-VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
I + S+ Q + +LSGG +++++ A L+T P +L+ DEPT G+D A K I +L +
Sbjct: 384 IKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD-VGAKKEI---YQLIN 439
Query: 178 QRKKTVLCTIHQPSS--ELIDMFDKIILLADSR 208
Q K L I S E++ M D+I+++ + R
Sbjct: 440 QFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472
|
Length = 501 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 2e-06
Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 39/201 (19%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDG---------------DIRVNGKPVEGKFR 59
++A +G SG GKSTLL + R+ D +I G D ++N K R
Sbjct: 48 IIAFIGPSGCGKSTLLRCFN-RMND--LIPGAKVEGRLLYRDRNIYDSQINSV----KLR 100
Query: 60 SACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ--RIALINSLLIELGLMNSQHT 117
G ++Q P ++YE++ F R Y+ L+ L +
Sbjct: 101 RQVGMVFQRPNPFPK-SIYENIAFAP------RANGYKGNLDELVEDSLRRAAIWEEVKD 153
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
++ + LSGG+++RL A + P +LL DEP + LD S ++ + EL
Sbjct: 154 KLKE----KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209
Query: 178 QRKKTVLCTIH--QPSSELID 196
Q T++ H Q +S + D
Sbjct: 210 QY--TIIMVTHNMQQASRVAD 228
|
Length = 274 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-06
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 22/184 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA-----CGFMYQ 67
G AI+G +G GKSTLL LS+ + G + ++G+ ++ + S G + Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQ-HYASKEVARRIGLLAQ 88
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE-LGLMNSQHTRIGSSSITQ 126
+ +TV E L+ R Y L E + G + +
Sbjct: 89 NATTPGDITVQE------LVARGR----YPHQPLFTRWRKEDEEAVTKAMQATGITHLAD 138
Query: 127 KVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+ V LSGG+R+R A L + A++L DEPTT LD L+ ++ EL ++ T+
Sbjct: 139 QSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLA 198
Query: 185 CTIH 188
+H
Sbjct: 199 AVLH 202
|
Length = 265 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (114), Expect = 2e-06
Identities = 48/191 (25%), Positives = 93/191 (48%), Gaps = 35/191 (18%)
Query: 15 LVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVEGK------FRSACGFMY 66
+ A +G SG GKST L L+Q L + +G+I G K R+ G ++
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 67 QHDLFSP-SLTVYEHLYFMALLK--LDRRV------KAYQRIALINSLLIELGLMNSQHT 117
Q +P +++++++ + DR++ K+ + AL + + +L
Sbjct: 170 QKP--TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDL-------D 220
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
+ G++ LSGG+++RL A + +P +LL DEPT+ LD + +K+ ++ EL
Sbjct: 221 KAGNA-------LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILEL-- 271
Query: 178 QRKKTVLCTIH 188
++K +++ H
Sbjct: 272 KKKYSIIIVTH 282
|
Length = 329 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 54/161 (33%), Positives = 73/161 (45%), Gaps = 44/161 (27%)
Query: 17 AIMGASGAGKSTL---LAALSQRLPDDCIIDGDIRVNGK-----------PVEGKFRSAC 62
AI G SGAGK++L ++ L++ P G I +NG+ P E K R
Sbjct: 28 AIFGRSGAGKTSLINAISGLTR--PQK----GRIVLNGRVLFDAEKGICLPPE-KRR--I 78
Query: 63 GFMYQ-HDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
G+++Q LF P V +L Y MA + Q ++ L IE L R
Sbjct: 79 GYVFQDARLF-PHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLL-----DRYP 126
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
S LSGGE++R++ LLT P LLL DEP LD
Sbjct: 127 GS-------LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 47/161 (29%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFR----SACGFMYQ- 67
G +AI+G +G GK+TLL L L D G + + G+ Q
Sbjct: 345 GERLAIIGENGVGKTTLLRTLVGELEPD--------------SGTVKWSENANIGYYAQD 390
Query: 68 --HDLFSPSLTVYEHLYFMALLK----LDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
+D F LT+++ +M+ + ++ V+ LG +
Sbjct: 391 HAYD-FENDLTLFD---WMSQWRQEGDDEQAVRGT------------LGRL-----LFSQ 429
Query: 122 SSITQKV-VLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
I + V VLSGGE+ R+ F ++ P +L+ DEPT +D
Sbjct: 430 DDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
|
Length = 530 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 3e-06
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 46/177 (25%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACGFM 65
G + ++G SG GKSTLL A L + I G+I + G+ V E R +
Sbjct: 29 DGEFIVLVGPSGCGKSTLLRMVAGLER------ITSGEIWIGGRVVNELEPADRD-IAMV 81
Query: 66 YQHDLFSPSLTVYEHLYFMAL-LK--------LDRRVKAYQRIALINSLLIELGLMNSQH 116
+Q+ P ++V E+ MA LK ++ RV RI +EL + +
Sbjct: 82 FQNYALYPHMSVREN---MAYGLKIRGMPKAEIEERVAEAARI-------LELEPLLDRK 131
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
R LSGG+R+R++ ++ +PA+ L DEP + LD +KL MR
Sbjct: 132 PR----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD----AKLRVQMR 174
|
Length = 356 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 3e-06
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE 55
G + A++G +GAGKSTL+ LS D G+I V+GK V
Sbjct: 26 GEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVS 65
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-06
Identities = 48/150 (32%), Positives = 67/150 (44%), Gaps = 31/150 (20%)
Query: 13 GTLVAIMGASGAGKST---LLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFM 65
G LV ++G +G+GKST LL L Q P G+I ++GKPV + +R
Sbjct: 349 GELVFLIGGNGSGKSTLAMLLTGLYQ--PQ----SGEILLDGKPVSAEQLEDYRK----- 397
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
LFS + Y HL F LL + LI L L L + G S
Sbjct: 398 ----LFSAVFSDY-HL-FDQLLGPE----GKASPQLIEKWLQRLELAHKTSLNDGRFSNL 447
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDE 155
+ LS G++KRL+ LL + +L+ DE
Sbjct: 448 K---LSTGQKKRLALLLALLEERDILVLDE 474
|
Length = 546 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 4e-06
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGG+++R++ A L P +L+ DEPT GLD ++++++ + KTV H
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITHT 235
Query: 190 PSSELIDMFDKIILLA 205
++++ D++I++
Sbjct: 236 -MEHVLEVADEVIVMD 250
|
Length = 320 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 46/206 (22%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK-----PVEGKFRSACGFMYQ 67
G+LVAI+G++G GK++L++A+ LP D + + G V F +
Sbjct: 643 GSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVIRGTVAYVPQVSWIFNA------- 693
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
TV +++ F + +R +A AL + L + L T IG +
Sbjct: 694 --------TVRDNILFGSPFDPERYERAIDVTALQHDLDL---LPGGDLTEIGE----RG 738
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA----SKLIRMMRELTSQRKKT- 182
V +SGG+++R+S A + ++ + + D+P + LD+ K I+ EL R KT
Sbjct: 739 VNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK--DEL---RGKTR 793
Query: 183 VLCT--IHQPSSELIDMFDKIILLAD 206
VL T +H + D+IIL+ +
Sbjct: 794 VLVTNQLH-----FLSQVDRIILVHE 814
|
Length = 1622 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 30/233 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EGKFRSACG-FM-Y 66
G + AIMG +G+GKSTL ++ P I++GDI G+ + E + R+ G F+ +
Sbjct: 32 KGEIHAIMGPNGSGKSTLSKVIAGH-PAYKILEGDILFKGESILDLEPEERAHLGIFLAF 90
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG-SSSIT 125
Q+ + P ++ + L L + + K L L L ++N + +G S
Sbjct: 91 QYPIEIPGVSNADFL----RLAYNSKRKFQGLPEL--DPLEFLEIINEKLKLVGMDPSFL 144
Query: 126 QKVV---LSGGERKR---LSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQ 178
+ V SGGE+KR L A L D L + DE +GLD A K+I + +L +
Sbjct: 145 SRNVNEGFSGGEKKRNEILQMA---LLDSELAILDETDSGLD-IDALKIIAEGINKLMTS 200
Query: 179 RKKTVLCTIHQPSSELIDMF--DKIILLADSRTAFIGSKDAALAFLESQGYPC 229
+L T +Q L+D D + ++ + + G + A LE +GY
Sbjct: 201 ENSIILITHYQ---RLLDYIKPDYVHVMQNGKIIKTGDAELAKE-LEKKGYDW 249
|
Length = 252 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-06
Identities = 48/209 (22%), Positives = 100/209 (47%), Gaps = 22/209 (10%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDC--IIDGD--IRVNGKPVE--GKFRSACGFMYQ- 67
+ ++G +G+GKST++ + + + I GD I N K ++ + R G ++Q
Sbjct: 39 VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQF 98
Query: 68 --HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+ LF T+ + + F + + + +AY+++ L++L + + +
Sbjct: 99 PEYQLFQE--TIEKDIAFGPVNLGENKQEAYKKVPE----LLKLVQLPEDYVK------R 146
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGG+++R++ A + D L+ DEPT GLD I + L + KK ++
Sbjct: 147 SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIM 206
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGS 214
H +++ + D++I++ + + IGS
Sbjct: 207 VTHN-MDQVLRIADEVIVMHEGKVISIGS 234
|
Length = 289 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-06
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 27/176 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAAL-SQRLPDDCIIDGDIRV----------NGKP--VEGKF 58
+G V + G SG+GKSTLL +L + LPD+ G I V +P V
Sbjct: 36 AGECVVLHGPSGSGKSTLLRSLYANYLPDE----GQILVRHEGEWVDLVTAEPREVLEVR 91
Query: 59 RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
R+ G++ Q P ++ + + L + R A + A LL L L R
Sbjct: 92 RTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAA---DLLTRLNLPE----R 144
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
+ S + SGGE++R++ A + D +LL DEPT LD+ + + ++ ++RE
Sbjct: 145 LWSLAPA---TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
|
Length = 235 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 6e-06
Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 22/198 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAAL-SQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
G +V I+G +G GKSTL +P +G+I ++G V R DL
Sbjct: 367 QGDIVFIVGENGCGKSTLAKLFCGLYIPQ----EGEILLDGAAVSADSRDD-----YRDL 417
Query: 71 FSPSLTVYEHLY-FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
FS ++ + F L+ D A A L L + + G S T
Sbjct: 418 FS---AIFADFHLFDDLIGPDEGEHASLDNA--QQYLQRLEIADKVKIEDGGFSTT--TA 470
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLD-SFSASKLIRMMRELTSQRKKTVLCTIH 188
LS G++KRL+ L D +LL DE D +F ++ +L ++ KT++ H
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDL-KRQGKTIIIISH 529
Query: 189 QPSSELIDMFDKIILLAD 206
+ ++ D+II LA
Sbjct: 530 --DDQYFELADQIIKLAA 545
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 7e-06
Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFM 65
G + ++G SG+GKST AL + + G+I +G+P+ R +
Sbjct: 312 GETLGLVGESGSGKSTTGLALLRLINSQ----GEIWFDGQPLHNLNRRQLLPVRHRIQVV 367
Query: 66 YQ--HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+Q + +P L V + L + A QR + +++ E+GL R +
Sbjct: 368 FQDPNSSLNPRLNV-LQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAE- 425
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
SGG+R+R++ A L+ P+L++ DEPT+ LD ++++ +++ L + +
Sbjct: 426 ------FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ 476
|
Length = 529 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 7e-06
Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 46/249 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--CGFMYQHDL 70
G ++AI G++G+GK++LL +I G++ +P EGK + + F Q
Sbjct: 63 GEMLAITGSTGSGKTSLLM----------LILGEL----EPSEGKIKHSGRISFSSQFSW 108
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE---LGLMNSQHTRIGSSSITQK 127
P T+ E++ F + D Y+ +++ + +E +T +G IT
Sbjct: 109 IMPG-TIKENIIFG--VSYDE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGIT-- 159
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R R+S A + D L L D P LD F+ ++ K +L T
Sbjct: 160 --LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVT- 216
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTT 247
E + DKI++L + + F G+ F E Q DF K + T
Sbjct: 217 --SKMEHLKKADKILILHEGSSYFYGT------FSELQS-------LRPDFSSKLMGYDT 261
Query: 248 NDELSSRRR 256
D+ S+ RR
Sbjct: 262 FDQFSAERR 270
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (109), Expect = 7e-06
Identities = 73/275 (26%), Positives = 119/275 (43%), Gaps = 45/275 (16%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL-PDDCIID-GDIRVNG-------KPVEGKFRSACG 63
G+ A++G +G+GKSTLL L+ L P + + GDI V+ KPV R G
Sbjct: 32 GSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPV----RKKVG 87
Query: 64 FMYQ---HDLFSPSLTVYEHLYF----MALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
++Q LF TV + + F + K A +++ ++ GL
Sbjct: 88 VVFQFPESQLFEE--TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMV-------GL----- 133
Query: 117 TRIGSSSITQK--VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
+ +K LSGG+ +R++ A L +P +L+ DEPT GLD + +++++ E
Sbjct: 134 ----ADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLF-E 188
Query: 175 LTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPCPY 231
Q +TV+ H ++ D D + LL G+ FL++ P
Sbjct: 189 SIHQSGQTVVLVTHL-MDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPK 247
Query: 232 GYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSV 266
+ AD L K+ AVT +R L + SV
Sbjct: 248 ATHFADQLQKTGAVTFEKLPITRAELVTLLTSLSV 282
|
Length = 288 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 36/161 (22%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-FRSA---CGFMYQHDLF 71
+A++G +G GKST+L +I G++ +P G FRSA QH +
Sbjct: 538 IAMVGPNGIGKSTILK----------LISGEL----QPSSGTVFRSAKVRMAVFSQHHVD 583
Query: 72 SPSLTVYEHLYFMALLK--LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
L+ LY M +++++A+ L G+ G+ ++
Sbjct: 584 GLDLSSNPLLYMMRCFPGVPEQKLRAH---------LGSFGVT-------GNLALQPMYT 627
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170
LSGG++ R++FA P +LL DEP+ LD + LI+
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LS GE ++ L+++P LL+ DEP GLD S +L ++ L + L +
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL--HQSGITLVLVLN 193
Query: 190 PSSELIDMFDKIILLADSRTAFIGSKDAALA 220
E+ D +LAD A G ++ L
Sbjct: 194 RFDEIPDFVQFAGVLADCTLAETGEREEILQ 224
|
Length = 490 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 60/222 (27%), Positives = 86/222 (38%), Gaps = 68/222 (30%)
Query: 15 LVAIMGASGAGKSTL----LAALSQR------------------LPDDCIIDG---DIRV 49
LV I G SG+GKS+L + A QR PD I+G I +
Sbjct: 23 LVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82
Query: 50 NGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSL--LI 107
+ K RS G TV E ++ LL + R+ + L L+
Sbjct: 83 DQKTTSRNPRSTVG------------TVTEIYDYLRLL--------FARVGIRERLGFLV 122
Query: 108 ELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL---LTDPALLLCDEPTTGLDSFS 164
++GL + + S+ T LSGGE +R+ AT++ LT L + DEP+ GL
Sbjct: 123 DVGL---GYLTLSRSAPT----LSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHPRD 174
Query: 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206
+LI ++ L TVL H I AD
Sbjct: 175 NDRLIETLKRLRDL-GNTVLVVEHDE---------DTIRAAD 206
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
LSGGER+RL+ A LL DP +L+ DE T+ LD + +K+ + EL R
Sbjct: 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGR 521
|
Length = 588 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 24/166 (14%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
GT+V ++G SG GK+T+L A L + IDG+ V + ++ R C +
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGE-DVTHRSIQQ--RDICMVFQSYA 88
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSL-LIELGLMNSQHTRIGSSSITQKV 128
LF P +++ E++ + LK+ K ++ + +L L++L ++ + Q
Sbjct: 89 LF-PHMSLGENVGYG--LKMLGVPKEERKQRVKEALELVDLAGFEDRY-------VDQ-- 136
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
+SGG+++R++ A L+ P +LL DEP + LD + L R MRE
Sbjct: 137 -ISGGQQQRVALARALILKPKVLLFDEPLSNLD----ANLRRSMRE 177
|
Length = 351 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 57/196 (29%), Positives = 83/196 (42%), Gaps = 42/196 (21%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKP----VEGKFRSACGFMY 66
G +V I+G +G GKST L L+ L P+ R P V +FR G
Sbjct: 99 PGKVVGILGPNGIGKSTALKILAGELKPNLG------RYEDPPSWDEVIKRFR---GTEL 149
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRR-VKAYQRIALI--------NSLL---IELGLMNS 114
Q+ YF L + + R V Q + LI LL E G +
Sbjct: 150 QN-------------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDE 196
Query: 115 QHTRIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 172
R+G ++ + V LSGGE +R++ A LL D + DEP++ LD R++
Sbjct: 197 VVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI 256
Query: 173 RELTSQRKKTVLCTIH 188
REL ++ K V+ H
Sbjct: 257 REL-AEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+++R++ A L +P L+ DEPT GLD +++ + L Q K +L T
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVT 222
|
Length = 305 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 130 LSGGERKRLSFATELLT---DPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
LSGGE +RL A ELL P L + DEPTTGL + LI +++ LT Q
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ 861
|
Length = 1809 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-05
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 33/206 (16%)
Query: 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACG 63
L+ + + ++G ++GA+G GKSTL LS L G + GKP++ R
Sbjct: 22 LDFSLSPVTG----LVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLA 74
Query: 64 FMYQHDLFSPSLTVYE----HLYFMAL---LKLDRRVKAYQRIALINSLLIELGLMNSQH 116
Q TV++ +++ + + R + + L L+++QH
Sbjct: 75 LRQQ------VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH 128
Query: 117 TRIGSSSITQKV-VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
R Q + LS G++KR++ A L+ LL DEPT GLD +++I ++R +
Sbjct: 129 FR------HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI 182
Query: 176 TSQRKKTVLCTIHQPSSELIDMFDKI 201
+Q ++ SS ID+ +I
Sbjct: 183 VAQGNHVII------SSHDIDLIYEI 202
|
Length = 271 |
| >gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD 40
G L+ ++G SGAGK TLL RL D
Sbjct: 1 GRLIYVVGPSGAGKDTLLDYARARLAGD 28
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PMID:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP [Central intermediary metabolism, Phosphorus compounds]. Length = 179 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 3e-05
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LS GER+ + A L + LL+ DEPT L +L +++R L +Q V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHR 141
Query: 190 PSSELIDMFDKIILLADSRTA 210
E+ ++ D++ +L D R
Sbjct: 142 L-DEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 33/168 (19%)
Query: 16 VAIMGASGAGKSTLLAALSQRLP-DD--CIIDGDIRVN------GKPVEGKFRS--ACGF 64
V ++G +GAGKSTL+ L+ + DD I + D+ V + VEG A G
Sbjct: 32 VCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGI 91
Query: 65 MYQ-------HDLFSPSLTVY--EHLYFMALL--KLDRRVKAYQRIALINSLLIELGLMN 113
Q HD+ T ++L +A L +LD +Q IN +L +LGL
Sbjct: 92 EEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHH-NLWQLENRINEVLAQLGL-- 148
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
+ S LSGG ++ + L+++P +LL DEPT LD
Sbjct: 149 DPDAALSS--------LSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 40/193 (20%)
Query: 6 LTGAALS---GTLVAIMGASGAGKSTL------LAALSQRLPDDCIIDGDIRVNGKPV-- 54
LT +LS G V ++G SG GKSTL L +Q G + G+ +
Sbjct: 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ---------GTVSFRGQDLYQ 77
Query: 55 -----EGKFRSACGFMYQ--HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLI 107
FR ++Q +P +TV + + L+ + ++ A I LL
Sbjct: 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLD 135
Query: 108 ELGLMNSQHTRIGSSSITQKV--VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 165
+GL S K+ LSGG+ +R++ A L P L++ DE + LD
Sbjct: 136 MVGL---------RSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQ 186
Query: 166 SKLIRMMRELTSQ 178
+ ++ ++R+L
Sbjct: 187 AVILELLRKLQQA 199
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 3e-05
Identities = 50/159 (31%), Positives = 71/159 (44%), Gaps = 41/159 (25%)
Query: 13 GTLVAIMGASGAGKSTLLAALS-QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQ-HDL 70
G +V I+G +GAGKSTL ++ Q PD G I++ G+ V+ ++ Q D
Sbjct: 350 GGIVGIIGPNGAGKSTLFKMITGQEQPDS----GTIKI-GETVK------LAYVDQSRDA 398
Query: 71 FSPSLTVYEH----LYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 122
P+ TV+E L + + + +AY +G N Q ++G
Sbjct: 399 LDPNKTVWEEISGGLDIIKVGNREIPSRAY------------VGRFNFKGGDQQKKVG-- 444
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
VLSGGER RL A L +LL DEPT LD
Sbjct: 445 ------VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-05
Identities = 45/210 (21%), Positives = 98/210 (46%), Gaps = 29/210 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL-- 70
G ++ + G GAG++ L+ AL P +G++ +NGKPV+ + + +
Sbjct: 286 GEILGVAGLVGAGRTELVQALFGAYPGKF--EGNVFINGKPVDIR---NPAQAIRAGIAM 340
Query: 71 ---------FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI-- 119
P L V +++ L K++ I++ EL ++ S R+
Sbjct: 341 VPEDRKRHGIVPILGVGKNITLSVL-------KSFCFKMRIDAA-AELQIIGSAIQRLKV 392
Query: 120 -GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+S LSGG +++ A LLT+P +L+ DEPT G+D + ++ +++ +L +
Sbjct: 393 KTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452
Query: 179 RKKTVLCTIHQPSSELIDMFDKIILLADSR 208
++ + E++ + D+++++ + +
Sbjct: 453 GVAIIVVSSELA--EVLGLSDRVLVIGEGK 480
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-05
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 31/181 (17%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGK-------PVEGKFRSA 61
+ AI+G SG GKST + L++ L G I + VE + R+
Sbjct: 48 HENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE-ELRTN 106
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLK-------LDRRVKAYQRIALINSLLIELGLMNS 114
G ++Q P ++Y+++ + + LD V+ R A I L + N+
Sbjct: 107 VGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA 165
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
LSGG+++RL A L +P ++L DEPT+ LD S K+ +++E
Sbjct: 166 YG-------------LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212
Query: 175 L 175
L
Sbjct: 213 L 213
|
Length = 271 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 36/155 (23%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA----CGFMYQH 68
G+ + ++G +GAGKSTL+ L+ L PV G+ A G+ QH
Sbjct: 338 GSRIGLLGRNGAGKSTLIKLLAGEL--------------APVSGEIGLAKGIKLGYFAQH 383
Query: 69 DL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
L + +HL +A +L+++++ Y LG Q ++ + T+
Sbjct: 384 QLEFLRADESPLQHLARLAPQELEQKLRDY------------LGGFGFQGDKV--TEETR 429
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
+ SGGE+ RL A + P LLL DEPT LD
Sbjct: 430 R--FSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 48/203 (23%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI------IDGDIRVNGKPVEGKFRSACGFM- 65
+V+++G +GAGK+T+ +C+ G I + G+ +EG M
Sbjct: 31 QEIVSLIGPNGAGKTTVF---------NCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81
Query: 66 ----YQH-DLFSPSLTVYEHL-----------YFMALLKLD--RRV--KAYQRIALINSL 105
+QH LF +TV E+L F LLK RR +A R A +
Sbjct: 82 VVRTFQHVRLFR-EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAA---TW 137
Query: 106 LIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 165
L +GL+ + + G+ L+ G+++RL A ++T P +L+ DEP GL+
Sbjct: 138 LERVGLLEHANRQAGN--------LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKET 189
Query: 166 SKLIRMMRELTSQRKKTVLCTIH 188
+L ++ EL ++ TVL H
Sbjct: 190 KELDELIAELRNEHNVTVLLIEH 212
|
Length = 255 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-05
Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD----CIIDGDIRVN----GKPVEGKFRSACGF 64
G + I+G SGAGK+TL ++ L + GD V+ G G+ + G
Sbjct: 310 GEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGI 369
Query: 65 MYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT--RIG- 120
++Q +DL+ P TV ++L + I L L EL M + T +G
Sbjct: 370 LHQEYDLY-PHRTVLDNLT--------------EAIGL--ELPDELARMKAVITLKMVGF 412
Query: 121 ----SSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
+ I K LS GER R++ A L+ +P +++ DEPT +D
Sbjct: 413 DEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 7e-05
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LSGGER+R++ LL P +LL DEPT LD
Sbjct: 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
|
Length = 556 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 8e-05
Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 58/235 (24%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG----KPVEGKF-RSACGFMYQ 67
G A +G SG GKST+L L +RL D +GDI +N K + K+ RS G + Q
Sbjct: 411 GKTYAFVGESGCGKSTILK-LIERLYDP--TEGDIIINDSHNLKDINLKWWRSKIGVVSQ 467
Query: 68 HDL-FSPSL--TVYEHLYFMALLK----------------LDRRVKAYQRIALINSLLI- 107
L FS S+ + LY + L+ ++R + A + +
Sbjct: 468 DPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527
Query: 108 -----ELGLMNSQHTRIGSS---SITQKVV----------------------LSGGERKR 137
EL M + I S +++KV+ LSGG+++R
Sbjct: 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQR 587
Query: 138 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
+S A ++ +P +L+ DE T+ LD+ S + + + L + + H+ S+
Sbjct: 588 ISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST 642
|
Length = 1466 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-05
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
A +G VAI+G +GAGK+TL+ L QR+ D + G I ++G + R +
Sbjct: 358 AKAGQTVAIVGPTGAGKTTLINLL-QRVYDPTV--GQILIDGIDINTVTRES-------- 406
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV- 128
L TV++ +R ++ R+ + E+ + I ++
Sbjct: 407 LRKSIATVFQDAGLF-----NRSIRENIRLGREGATDEEV--YEAAKAAAAHDFILKRSN 459
Query: 129 -----------VLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LSGGER+RL+ A +L + +L+ DE T+ LD
Sbjct: 460 GYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRS-----ACGFMY- 66
G ++ I G GAG++ L+ L P +G+I ++GKPV K R+ A G
Sbjct: 288 GEILGIAGLVGAGRTELVQCLFGAYPGRW--EGEIFIDGKPV--KIRNPQQAIAQGIAMV 343
Query: 67 ----QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS--QHTRIG 120
+ D P + V ++ + L LDR + + I+ EL + Q ++
Sbjct: 344 PEDRKRDGIVPVMGVGKN---ITLAALDR----FTGGSRIDDAA-ELKTILESIQRLKVK 395
Query: 121 SSSITQKVV-LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
++S + LSGG +++ A LL +P +L+ DEPT G+D + ++ +++ +L Q
Sbjct: 396 TASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454
|
Length = 506 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 13 GTLVAIMGASGAGKST---LLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G L+ ++G +G+GKST LL L Q P G+I ++GKPV + Y+
Sbjct: 349 GELLFLIGGNGSGKSTLAMLLTGLYQ--P----QSGEILLDGKPVTAEQPED----YRK- 397
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
LFS T + HL F LL + + AL+ L L + + G S +
Sbjct: 398 LFSAVFTDF-HL-FDQLLGPEGKPAN---PALVEKWLERLKMAHKLELEDGRISNLK--- 449
Query: 130 LSGGERKRLSFATELLTDPALLLCDE 155
LS G++KRL+ L + +LL DE
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGG R+R+ A L PA+L+ DEPTT LD ++++++++ L + V+ H
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228
Query: 190 PSSELIDMFDKIILLADSRTAFIGS 214
+ ++ D+++++ GS
Sbjct: 229 -MGVVAEIADRVLVMYQGEAVETGS 252
|
Length = 623 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 18/59 (30%), Positives = 38/59 (64%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+++R++ A L +P++++ DE T+ LD + L+ ++R++ S+ T++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201
|
Length = 269 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 33/188 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFMYQH 68
G VAI+G +G+GKSTL L+ L + G I V G + + R G ++Q+
Sbjct: 33 GEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQN 89
Query: 69 --DLFSPSLTVYEHLYF------MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
+ F + TV + + F + ++ RV Q + + M R
Sbjct: 90 PDNQFVGA-TVQDDVAFGLENIGVPREEMVERVD--QALRQVG--------MEDFLNREP 138
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
LSGG+++R++ A L P +++ DE T+ LD +++ +R+L Q+
Sbjct: 139 HR-------LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKG 191
Query: 181 KTVLCTIH 188
TVL H
Sbjct: 192 ITVLSITH 199
|
Length = 279 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 24/228 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK---PVEGKFRSACG-FM-Y 66
G + AIMG +G+GKSTL A L+ R D + G + GK + + R+ G FM +
Sbjct: 26 PGEVHAIMGPNGSGKSTLSATLAGR-EDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAF 84
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSL----LIE--LGLMNSQHTRIG 120
Q+ + P V + L V++Y+ ++ L+E + L+ +
Sbjct: 85 QYPVEIPG--VSNQFFLQTALN---AVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLT 139
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 180
S V SGGE+KR + +P L + DE +GLD + + + L ++
Sbjct: 140 RSV---NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKR 196
Query: 181 KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF-LESQGY 227
++ T +Q + I D + +L R + S D L LE QGY
Sbjct: 197 SFIIVTHYQRILDYIKP-DYVHVLYQGR--IVKSGDFTLVKQLEEQGY 241
|
Length = 248 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 20/187 (10%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
+G L I+G G GKS+LL A+ L + ++G + + K A ++ +
Sbjct: 26 TGQLTMIVGQVGCGKSSLLLAI---LGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVA 82
Query: 72 SPS-------LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSS 123
+ TV E++ F + R Y+ + SL ++ L+ T IG
Sbjct: 83 YAAQKPWLLNATVEENITFGSPFNKQR----YKAVTDACSLQPDIDLLPFGDQTEIGERG 138
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKT 182
I LSGG+R+R+ A L + ++ D+P + LD + L++ + + K+T
Sbjct: 139 IN----LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRT 194
Query: 183 VLCTIHQ 189
++ H+
Sbjct: 195 LVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
LSGG+ +R++ A L +P +L+ DEPT GLD +L+ + ++L VL T
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT 202
|
Length = 280 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 61/236 (25%), Positives = 86/236 (36%), Gaps = 95/236 (40%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL----------PD-DCIID----------------G 45
G + I+G +G GK+T + LS L P D ++ G
Sbjct: 99 GKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNG 158
Query: 46 DIRVNGKP---------VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAY 96
+I+V KP +GK R +L L K+D R K
Sbjct: 159 EIKVVHKPQYVDLIPKVFKGKVR---------EL---------------LKKVDERGK-- 192
Query: 97 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156
++ ++ LGL N I LSGGE +R++ A LL D DEP
Sbjct: 193 -----LDEVVERLGLENILDRDISE--------LSGGELQRVAIAAALLRDADFYFFDEP 239
Query: 157 TTGLD---SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL--LADS 207
T+ LD + ++LI REL K VL H D +L LAD+
Sbjct: 240 TSYLDIRQRLNVARLI---RELA--EGKYVLVVEH----------DLAVLDYLADN 280
|
Length = 590 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
QK LSGGE +R+ A LL P LL+ DEPT G+D
Sbjct: 119 QK--LSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGG +R+ A + P LL+ DEPTT LD +++I ++ EL Q+K+
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL--QQKE 203
|
Length = 326 |
| >gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD 40
G L+A++G SGAGK TLL A RL
Sbjct: 5 GRLIAVVGPSGAGKDTLLDAARARLAGR 32
|
Length = 192 |
| >gnl|CDD|221983 pfam13207, AAA_17, AAA domain | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 4e-04
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCI-IDGDIRVNG 51
++ I G G+GKSTL L+++L I +D +R G
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEG 38
|
Length = 114 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 46/197 (23%), Positives = 71/197 (36%), Gaps = 36/197 (18%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPS 74
L I+G +GAGK+T++ AL L G++ N K G +
Sbjct: 24 LTLIVGQNGAGKTTIIEALKYAL------TGELPPNSKG---------GAHDPKLIREGE 68
Query: 75 LTVYEHLYFMALLKLDRRVKAYQRIALI-NSLLIELGLMNSQHTR-IGSSSITQKVVLSG 132
+ L F ++ + +A++ N + G N G SG
Sbjct: 69 VRAQVKLAFE--NANGKKYTITRSLAILENVIFCHQGESNWPLLDMRGR--------CSG 118
Query: 133 GERKRLSFA-----TELLTDPA-LLLCDEPTTGLDSFS-ASKLIRMMRELTSQRKKTVLC 185
GE+ S E +L DEPTT LD + L ++ E SQ+ ++
Sbjct: 119 GEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIV 178
Query: 186 TIHQPSSELIDMFDKII 202
H EL+D D I
Sbjct: 179 ITHDE--ELVDAADHIY 193
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 6e-04
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR 48
L G ++G SG GKSTLL AL LP+ + G+I
Sbjct: 81 ELLKGKTSVLVGQSGVGKSTLLNAL---LPELVLATGEIS 117
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 7e-04
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 16 VAIMGASGAGKSTLLAALSQRLP 38
+ I+G GAGKSTL L+++L
Sbjct: 3 ILILGPPGAGKSTLAKKLAKKLG 25
|
Length = 178 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 7e-04
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
L+ GE +++ A L P LL+ DEPT ++ + +++ R++ L T+L H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
|
Length = 330 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 8e-04
Identities = 52/216 (24%), Positives = 98/216 (45%), Gaps = 27/216 (12%)
Query: 13 GTLVAIMGASGAGKSTL---LAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH- 68
G + I+G +G+GKSTL L L + ++ G + ++G R G ++Q+
Sbjct: 28 GEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQG-IRKLVGIVFQNP 86
Query: 69 DLFSPSLTVYEHLYF----MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
+ TV E L F + L ++ R ++ L E+GL +H +
Sbjct: 87 ETQFVGRTVEEDLAFGPENLCLPPIEIR-------KRVDRALAEIGLEKYRHRSPKT--- 136
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+ + ++ A L +P L+ DE T+ LD S ++ +++L ++ KT++
Sbjct: 137 -----LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIV 190
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H + E + D+II++ + G + L+
Sbjct: 191 YITH--NLEELHDADRIIVMDRGKIVLEGEPENVLS 224
|
Length = 274 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 26/58 (44%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 104 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
SLL LG N Q R S SGG R RL+ A L+ LLL DEPT LD
Sbjct: 131 SLLHGLGFSNEQLERPVSD-------FSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 38/184 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFM 65
G + ++G SG GKST A+ + DG++ GK + G RS +
Sbjct: 47 GETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMI 103
Query: 66 YQHDLFS--PSLTVYE------HLYFMALLKLD--RRVKAYQRIALINSLLIELGLMNSQ 115
+Q L S P +T+ E Y L + + RVKA +++++GL+ +
Sbjct: 104 FQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKA---------MMLKVGLLPNL 154
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
R SGG+ +R+ A L+ +P L++CDEP + LD ++++ ++++L
Sbjct: 155 INRYPHE-------FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207
Query: 176 TSQR 179
QR
Sbjct: 208 --QR 209
|
Length = 331 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
LSGG ++++ A L P LL+ DEPT G+D + + + +++R + +Q + I
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF--ISS 461
Query: 190 PSSELIDMFDKIILLADSRTAFIGSKDA-------ALAFLESQG 226
E+ M D+++++ + + A LAF E Q
Sbjct: 462 DLEEIEQMADRVLVMHQGEISGALTGAAINVDTIMRLAFGEHQA 505
|
Length = 510 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.002
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRE 174
++G + T LSGGE +R+ A EL T L + DEPTTGL KL+ ++
Sbjct: 823 KLGQPATT----LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHR 878
Query: 175 LTSQ 178
L +
Sbjct: 879 LVDK 882
|
Length = 943 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLD-SFSASKLIRMM 172
SGG+R+R++ A L+ DP +++ DEP + LD S A L MM
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMM 198
|
Length = 327 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 38.0 bits (88), Expect = 0.002
Identities = 41/188 (21%), Positives = 79/188 (42%), Gaps = 37/188 (19%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE---GKFRSACGFMYQH 68
+G L+ + G++GAGK+TLL ++ L + G+I + ++ ++ F+
Sbjct: 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQKQLCFVGHR 82
Query: 69 DLFSPSLTVYEHLYF-----MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
+P LT+ E+ + + + + + LI+ GL
Sbjct: 83 SGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID---YPCGL------------ 127
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK-- 181
LS G++++++ ++ L L DEP LD S L+ ++ ++ R K
Sbjct: 128 ------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS---LLTIITKIQEHRAKGG 178
Query: 182 TVLCTIHQ 189
VL T HQ
Sbjct: 179 AVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 18/32 (56%), Positives = 19/32 (59%)
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LSGGER RL A L LL+ DEPT LD
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
|
Length = 635 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE-- 174
T IG + LSGG++ R+S A + + + L D+P + LD+ R++ E
Sbjct: 774 TEIGEKGVN----LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE---RVVEECF 826
Query: 175 LTSQRKKT-VLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
L + KT VL T HQ ++ D ++ L D R F GS
Sbjct: 827 LGALAGKTRVLAT-HQ--VHVVPRADYVVALGDGRVEFSGS 864
|
Length = 1560 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 37.8 bits (87), Expect = 0.003
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 130 LSGGERKRLSFATELLTD---PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 186
+S G ++ L+ LL+ +LLL DEP GL KL+ +++EL S++ ++ T
Sbjct: 190 ISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKEL-SEKGAQLIFT 248
Query: 187 IHQPSSELID 196
H S L+D
Sbjct: 249 TH--SPLLLD 256
|
Length = 256 |
| >gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDC 41
T+V I G GAGKSTL L L D
Sbjct: 34 TIVGIAGPPGAGKSTLAEFLEALLQQDG 61
|
Length = 229 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.004
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG-----KPVEGKFRSACGFMY 66
G V ++G +G+GKSTLL+A + L +GDI+++G P++ K+R A G +
Sbjct: 29 PGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGDIQIDGVSWNSVPLQ-KWRKAFGVIP 83
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSI 124
Q +F S T ++L + K + + L +IE G ++ G
Sbjct: 84 Q-KVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGL--KSVIEQFPGQLDFVLVDGG---- 136
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
VLS G ++ + A +L+ +LL DEP+ LD + + + +++
Sbjct: 137 ---CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQ 183
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0061|consensus | 613 | 100.0 | ||
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0065|consensus | 1391 | 100.0 | ||
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0058|consensus | 716 | 100.0 | ||
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| KOG0057|consensus | 591 | 100.0 | ||
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| KOG0065|consensus | 1391 | 100.0 | ||
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| KOG0056|consensus | 790 | 100.0 | ||
| KOG0059|consensus | 885 | 100.0 | ||
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 100.0 | |
| KOG0054|consensus | 1381 | 100.0 | ||
| KOG0054|consensus | 1381 | 100.0 | ||
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.98 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.98 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.98 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.97 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.97 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.97 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.96 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.96 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.96 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.96 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.95 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.95 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.95 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.95 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.95 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.94 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.94 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.94 | |
| KOG0927|consensus | 614 | 99.94 | ||
| KOG0927|consensus | 614 | 99.93 | ||
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.91 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.91 | |
| KOG2355|consensus | 291 | 99.9 | ||
| KOG0062|consensus | 582 | 99.9 | ||
| KOG0060|consensus | 659 | 99.9 | ||
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.89 | |
| KOG0062|consensus | 582 | 99.89 | ||
| KOG0066|consensus | 807 | 99.88 | ||
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.88 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.87 | |
| KOG0064|consensus | 728 | 99.86 | ||
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.86 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.86 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.86 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.86 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.85 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.85 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.84 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.84 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.83 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.82 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.77 | |
| KOG0066|consensus | 807 | 99.77 | ||
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.75 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.74 | |
| KOG0063|consensus | 592 | 99.73 | ||
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.68 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.65 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.65 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.64 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.62 | |
| KOG0063|consensus | 592 | 99.59 | ||
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.54 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.51 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.51 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.5 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.49 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.49 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.48 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.48 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.47 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.47 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.44 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.43 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.4 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.4 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.39 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.36 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.35 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.34 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.32 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.32 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.31 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.3 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.25 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.25 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.23 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.18 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.15 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.14 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.13 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 99.12 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.05 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 99.03 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.01 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.98 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.95 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.93 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.9 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.9 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.88 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.88 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.87 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.83 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.81 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.78 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.77 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.73 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.72 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.7 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.64 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.64 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.57 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.53 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.51 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.49 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.48 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.48 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.46 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 98.46 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.46 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.44 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.44 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.44 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.41 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 98.41 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 98.39 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.39 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.38 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.37 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.36 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 98.36 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.34 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.34 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 98.32 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 98.32 | |
| PRK13764 | 602 | ATPase; Provisional | 98.31 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.29 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.27 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=396.43 Aligned_cols=201 Identities=27% Similarity=0.440 Sum_probs=182.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.+||+++++||+++|+||||||||||||||+++.+|+ +|+|+++|+++.. .+|+++|+|||+..+||++||.
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvl 95 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVL 95 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHH
Confidence 4899999999999999999999999999999999995 8999999987742 4789999999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.++...-. ..++.+..+.+.++|+++||.+.++.+ |.+|||||||||+|||||+++|+++|+|||||
T Consensus 96 eNv~lap~~v~--~~~k~eA~~~A~~lL~~VGL~~ka~~y--------P~qLSGGQqQRVAIARALaM~P~vmLFDEPTS 165 (240)
T COG1126 96 ENVTLAPVKVK--KLSKAEAREKALELLEKVGLADKADAY--------PAQLSGGQQQRVAIARALAMDPKVMLFDEPTS 165 (240)
T ss_pred HHHHhhhHHHc--CCCHHHHHHHHHHHHHHcCchhhhhhC--------ccccCcHHHHHHHHHHHHcCCCCEEeecCCcc
Confidence 99999764322 234556667789999999999999999 67799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||....++++.+++++ +.|+|.|+|||++ .++.+.+|||++|++|+++..|+|++++
T Consensus 166 ALDPElv~EVL~vm~~LA-~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 166 ALDPELVGEVLDVMKDLA-EEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred cCCHHHHHHHHHHHHHHH-HcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 999999999999999995 5699999999997 5899999999999999999999999665
|
|
| >KOG0061|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-55 Score=439.77 Aligned_cols=258 Identities=45% Similarity=0.763 Sum_probs=233.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|||++++|||++||+|||||||||||++|+|+...+...+|+|++||++... .+++.+|||.|++.++|++||+|++.
T Consensus 47 ~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~ 126 (613)
T KOG0061|consen 47 KGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLR 126 (613)
T ss_pred eCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHH
Confidence 48999999999999999999999999999999988754579999999977654 58889999999999999999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
|.+.++.+...+..++.++++++++.+||.+++|+.+|+... +++||||||||+||..|+++|.||+|||||+|||+
T Consensus 127 f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~---rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS 203 (613)
T KOG0061|consen 127 FSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGI---RGLSGGERKRVSIALELLTDPSILFLDEPTSGLDS 203 (613)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCC---CccccchhhHHHHHHHHHcCCCEEEecCCCCCcch
Confidence 999999887777788889999999999999999999998654 56999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHHHCCCCCCCCCChHHHHHHh
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKS 242 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 242 (290)
.++.++++.|++++++ |+|||++.|||+.++++++|++++|.+|+++|.|+++++.++|...|++||...||+||+++.
T Consensus 204 ~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l 282 (613)
T KOG0061|consen 204 FSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDL 282 (613)
T ss_pred hhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHH
Confidence 9999999999999766 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC-CchhhhHHHHHHHHHHHhh
Q psy2520 243 LAVT-TNDELSSRRRLKRICDEFS 265 (290)
Q Consensus 243 ~~~~-~~~~~~~~~~~~~l~~~~~ 265 (290)
+..+ ...+.....+.......++
T Consensus 283 ~s~~~~~~~~~~~~~~~~~~~~~~ 306 (613)
T KOG0061|consen 283 LSVDSGTRELEEAVRIAKLINKFS 306 (613)
T ss_pred HccCCCchhHHhHHHHHHHhhhcc
Confidence 8764 3333333444444455554
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-56 Score=398.01 Aligned_cols=201 Identities=26% Similarity=0.424 Sum_probs=187.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||.|++||++||+|+||||||||+||++++..|+ +|+|.++|+++.. ..|++|||+||+..++...|
T Consensus 23 ~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrT 99 (339)
T COG1135 23 DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRT 99 (339)
T ss_pred ccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccccccch
Confidence 4799999999999999999999999999999999995 8999999998864 36889999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|++|++|.+.+.. .++.+..+++.++++.+||+++.+++ |.+|||||||||+|||||+.+|+|||+|||
T Consensus 100 V~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y--------P~qLSGGQKQRVaIARALa~~P~iLL~DEa 168 (339)
T COG1135 100 VFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY--------PAQLSGGQKQRVAIARALANNPKILLCDEA 168 (339)
T ss_pred HHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC--------chhcCcchhhHHHHHHHHhcCCCEEEecCc
Confidence 9999999988765 34567778899999999999999999 677999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+|||.+...|+++|++++++.|.||+++||++ +.+.++||||.+|++|+++..|+..+++
T Consensus 169 TSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 169 TSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred cccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999888999999999997 5788999999999999999999998876
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-55 Score=382.65 Aligned_cols=201 Identities=25% Similarity=0.386 Sum_probs=186.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||+|++||+++++|||||||||+||+|++++.|+ +|+|++||+++.. ++|++||||-|...+||++||.|
T Consensus 18 ~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~e 94 (309)
T COG1125 18 DDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAE 94 (309)
T ss_pred eeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHH
Confidence 5899999999999999999999999999999999994 8999999999975 58999999999999999999999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC--CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM--NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+++...+... ++++..++++++|+.+||. ++.+++ |.+|||||+|||.+||||+.+|++||||||+
T Consensus 95 NIa~VP~L~~w---~k~~i~~r~~ELl~lvgL~p~~~~~Ry--------P~eLSGGQQQRVGv~RALAadP~ilLMDEPF 163 (309)
T COG1125 95 NIATVPKLLGW---DKERIKKRADELLDLVGLDPSEYADRY--------PHELSGGQQQRVGVARALAADPPILLMDEPF 163 (309)
T ss_pred HHHhhhhhcCC---CHHHHHHHHHHHHHHhCCCHHHHhhcC--------chhcCcchhhHHHHHHHHhcCCCeEeecCCc
Confidence 99998876543 4456667899999999996 478888 6779999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
++|||.++.++.+.++++.++-|+|||+||||+ +++.+++|||++|++|+++..++|++++
T Consensus 164 gALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 164 GALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred cccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 999999999999999999777899999999997 6899999999999999999999999876
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-54 Score=428.60 Aligned_cols=271 Identities=47% Similarity=0.828 Sum_probs=236.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|+|+++++||+++|+|||||||||||++|+|+.++....+|+|.+||.++.. .+++.+|||+|++.+++.+||+||+.
T Consensus 42 ~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~ 121 (617)
T TIGR00955 42 KNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLM 121 (617)
T ss_pred cCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHH
Confidence 58999999999999999999999999999999988753357999999999864 46778999999999999999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
|++.++.+......++.++++++++.+||.+..|+.+|++.. .++|||||||||+||++|+.+|++++|||||+|||+
T Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~--~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~ 199 (617)
T TIGR00955 122 FQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGR--VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS 199 (617)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCC--CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhH
Confidence 998776554344455667789999999999999999987421 346999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHHHCCCCCCCCCChHHHHHHh
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKS 242 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 242 (290)
.++..+++.|+++++ .|+|||+++|+++.++.++||++++|++|++++.|+++++.+++++.|++||...+|+|++.+.
T Consensus 200 ~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~ 278 (617)
T TIGR00955 200 FMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQV 278 (617)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHH
Confidence 999999999999954 5999999999997678999999999999999999999999999999999999999999999998
Q ss_pred hcCCCchhhhHHHHHHHHHHHhhhchhHHhHhhhh
Q psy2520 243 LAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEI 277 (290)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 277 (290)
.......+.......+.+++.|..++.+++....+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 313 (617)
T TIGR00955 279 LAVIPGSENESRERIEKICDSFAVSDIGRDMLVNT 313 (617)
T ss_pred hhcCcccccchHHHHHHHHHHHhcchhhHHHHHHh
Confidence 86554444344556677888898888777655443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=377.84 Aligned_cols=188 Identities=30% Similarity=0.446 Sum_probs=172.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.||||++.+||+++|+||||||||||||+|+|+.+|+ +|+|.++|+++ ......+|||||++.++|.+||.||+.|
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l 95 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV-TGPGPDIGYVFQEDALLPWLTVLDNVAL 95 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc-CCCCCCEEEEeccCcccchhhHHhhhee
Confidence 4899999999999999999999999999999999995 89999999998 4456789999999999999999999999
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
+..... ....++.+++.++++.+||.++.+++ |++|||||||||+|||||+.+|++||||||+++||..
T Consensus 96 ~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~--------P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDal 164 (248)
T COG1116 96 GLELRG---KSKAEARERAKELLELVGLAGFEDKY--------PHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164 (248)
T ss_pred hhhccc---cchHhHHHHHHHHHHHcCCcchhhcC--------ccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHH
Confidence 987654 23344556789999999999999999 6779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCC
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 207 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G 207 (290)
++..+.+.|.++.++.++||++||||. +|+..++|||++|.++
T Consensus 165 TR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 165 TREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 999999999999888899999999998 5899999999999984
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-54 Score=373.76 Aligned_cols=190 Identities=35% Similarity=0.534 Sum_probs=169.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------c-ccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------K-FRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~-~~~~ig~v~Q~~~~~~~l 75 (290)
.++||.|++||+++|+|||||||||||++|.|+..|+ +|.|+++|+++.. . .++.||||||+..|+|++
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~l 98 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDL 98 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCC
Confidence 5899999999999999999999999999999999994 8999999998863 2 356799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccC-cccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH-TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
||.||+.+.+.+..... ....+++.++++.+||.+..+ ++ |.+|||||||||+|||||+.+|+++|+|
T Consensus 99 tv~ENv~lpl~~~~~~~---~~~~~~~~~l~~~lgl~~~~~~~~--------p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 99 TVLENVELPLLIAGKSA---GRRKRAAEELLEVLGLEDRLLKKK--------PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CHHHHHHhHHHHcCCCh---hHHHHHHHHHHHhcCChhhhccCC--------chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 99999998765543221 134566788999999997776 66 5669999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
|||.+||+.+...++++|++++++.|+|||+||||+ .+..+|||++.|.+|++
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 999999999999999999999777799999999996 68899999999999984
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=383.99 Aligned_cols=215 Identities=27% Similarity=0.402 Sum_probs=187.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||||+|+|+++|. +|+|+++|+++.. .+.+.+|||||.+...+.+||+|
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d 95 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE 95 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEee
Confidence 4899999999999999999999999999999999995 7999999999865 46789999999988888999999
Q ss_pred HHHHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
.+.++..-+... .....+..+.+.++|+.+|+.+++++.+ .+|||||||||.|||||+++|++|||||||+
T Consensus 96 ~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~--------~~LSGGerQrv~iArALaQ~~~iLLLDEPTs 167 (258)
T COG1120 96 LVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV--------DELSGGERQRVLIARALAQETPILLLDEPTS 167 (258)
T ss_pred hHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc--------cccChhHHHHHHHHHHHhcCCCEEEeCCCcc
Confidence 999875432211 1122334457889999999999999994 4599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCCC
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPCP 230 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~~ 230 (290)
.||...+.+++++++++++++|+|||+++||++ .+.++||++++|++|++++.|+|++++. .-+-+|.++.
T Consensus 168 ~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vygv~~~ 241 (258)
T COG1120 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVDAD 241 (258)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhCCceE
Confidence 999999999999999997788999999999985 7999999999999999999999998764 2234555543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-54 Score=393.66 Aligned_cols=202 Identities=25% Similarity=0.401 Sum_probs=186.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.++|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.|+|++++. -..+.|+||||+..+||+|||+||+
T Consensus 20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Ni 96 (338)
T COG3839 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENI 96 (338)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHh
Confidence 5799999999999999999999999999999999995 8999999999986 3568899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|++..+.. .+.+..+++.++.+.++|.+..+++ +.+|||||||||+|||||+.+|+++|||||+|+||
T Consensus 97 af~Lk~~~~---~k~ei~~rV~eva~~L~l~~lL~r~--------P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLD 165 (338)
T COG3839 97 AFGLKLRGV---PKAEIDKRVKEVAKLLGLEHLLNRK--------PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD 165 (338)
T ss_pred hhhhhhCCC---chHHHHHHHHHHHHHcCChhHHhcC--------cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhh
Confidence 999877542 4456677889999999999999999 67799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
...+..+...|+++.++-|.|+|++|||. .++..++|||++|++|++...|+|.++..
T Consensus 166 a~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 166 AKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999666799999999996 68999999999999999999999998763
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=369.77 Aligned_cols=203 Identities=32% Similarity=0.470 Sum_probs=183.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||++++||+++|+||||||||||||+|.|+++|+ +|+|+++|+++.. .+++++|++||...+|..+|
T Consensus 25 d~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFsslt 101 (263)
T COG1127 25 DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLT 101 (263)
T ss_pred cCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccc
Confidence 5899999999999999999999999999999999995 8999999999854 36789999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|+||+.|..+.+. ..++....+.+..-|+.+||... .+.. |++|||||+||++|||||+.+|+++++||
T Consensus 102 V~eNVafplre~~--~lp~~~i~~lv~~KL~~VGL~~~~~~~~--------PsELSGGM~KRvaLARAialdPell~~DE 171 (263)
T COG1127 102 VFENVAFPLREHT--KLPESLIRELVLMKLELVGLRGAAADLY--------PSELSGGMRKRVALARAIALDPELLFLDE 171 (263)
T ss_pred hhHhhheehHhhc--cCCHHHHHHHHHHHHHhcCCChhhhhhC--------chhhcchHHHHHHHHHHHhcCCCEEEecC
Confidence 9999999876543 23445556667788999999877 7777 66799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+||||.+...+-+++++++..-|.|+++||||. ..+..+|||++++.+|++++.|+++++..
T Consensus 172 PtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 172 PTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred CCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999777799999999998 57999999999999999999999998763
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-53 Score=386.43 Aligned_cols=204 Identities=33% Similarity=0.461 Sum_probs=183.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||||++++|+++||+||||||||||+|+|+|+++|+ +|+|.++|.+... .+++.+||+||++.+++.+||+||
T Consensus 22 ~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~ 98 (293)
T COG1131 22 DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVREN 98 (293)
T ss_pred eceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHH
Confidence 4899999999999999999999999999999999994 8999999999865 467889999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.|.+.++.... ....++++++++.++|.+..+++ +++||+|||||++||+||+.+|++|||||||+||
T Consensus 99 l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~--------~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GL 167 (293)
T COG1131 99 LEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK--------VRTLSGGMKQRLSIALALLHDPELLILDEPTSGL 167 (293)
T ss_pred HHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc--------hhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCC
Confidence 999998876432 33446788999999999866777 4569999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 222 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 222 (290)
||.++.+++++|++++++.|+||+++||.+ .++..+||+|++|++|++++.|+++++...+
T Consensus 168 Dp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 168 DPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred CHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 999999999999999665448999999998 5899999999999999999999998866543
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-52 Score=420.00 Aligned_cols=237 Identities=39% Similarity=0.656 Sum_probs=210.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++||++||+|||||||||||++|+|+.+|+. .+|+|.+||+++....++.+|||+|++.+++.+||+||+.|
T Consensus 85 ~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~-~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 163 (659)
T PLN03211 85 NGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNN-FTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVF 163 (659)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCc-eeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHH
Confidence 47999999999999999999999999999999988742 47999999999865556679999999999999999999999
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
.+..+.+.....++..++++++++.+||.+..++.+++.. +++|||||||||+||++|+.+|++|||||||+|||+.
T Consensus 164 ~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~---~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~ 240 (659)
T PLN03211 164 CSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSF---IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240 (659)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCC---CCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence 8765533222334445668899999999999988877642 4679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHHHCCCCCCCCCChHHHHHHhh
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSL 243 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (290)
++..+++.|+++++ .|+|||+++|++..++.++||++++|++|++++.|+++++.++|++.|++||...||+||++++.
T Consensus 241 ~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~ 319 (659)
T PLN03211 241 AAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLA 319 (659)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHc
Confidence 99999999999954 58999999999965688999999999999999999999999999999999999999999999987
Q ss_pred cC
Q psy2520 244 AV 245 (290)
Q Consensus 244 ~~ 245 (290)
..
T Consensus 320 ~~ 321 (659)
T PLN03211 320 NG 321 (659)
T ss_pred Cc
Confidence 64
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=394.87 Aligned_cols=202 Identities=25% Similarity=0.424 Sum_probs=186.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+|++|++||+++|+|||||||||||++|+|+..|+ +|+|.++|++++. -.++.||+|||+..+||+|||+||+
T Consensus 22 ~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NV 98 (352)
T COG3842 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENV 98 (352)
T ss_pred ecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHh
Confidence 5799999999999999999999999999999999995 8999999999976 3578999999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
+|++..+. .....+..+++.++++.++|.++.+++ +.+|||||||||+|||||+.+|++||||||.++||
T Consensus 99 afGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~--------p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD 168 (352)
T COG3842 99 AFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRK--------PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168 (352)
T ss_pred hhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhC--------hhhhChHHHHHHHHHHHhhcCcchhhhcCcccchh
Confidence 99987432 223455667899999999999999999 66699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
..-+.++...|+++.++.|.|.|+||||. .++..++|||++|++|+|...|+|+++.
T Consensus 169 ~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 169 AKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHh
Confidence 99999999999999878899999999996 6899999999999999999999999875
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-53 Score=378.17 Aligned_cols=203 Identities=31% Similarity=0.470 Sum_probs=184.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCE---ecCc-c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK---PVEG-K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~---~~~~-~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|||++|+.||++|++|||||||||||++|+|+..|+ .|.|.+||+ +.++ . ..++||||||+..+|++|||.
T Consensus 19 ~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa 95 (345)
T COG1118 19 DDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVA 95 (345)
T ss_pred ccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcccchHH
Confidence 4899999999999999999999999999999999995 899999999 5443 1 346899999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
+||+|+...+. ...+..+.+.++.++|+.+.|++..+++ |.+|||||||||++||||+..|++||||||++
T Consensus 96 ~NIAFGl~~~~-~~p~~~~~r~rv~elL~lvqL~~la~ry--------P~QLSGGQrQRVALARALA~eP~vLLLDEPf~ 166 (345)
T COG1118 96 DNIAFGLKVRK-ERPSEAEIRARVEELLRLVQLEGLADRY--------PAQLSGGQRQRVALARALAVEPKVLLLDEPFG 166 (345)
T ss_pred hhhhhcccccc-cCCChhhHHHHHHHHHHHhcccchhhcC--------chhcChHHHHHHHHHHHhhcCCCeEeecCCch
Confidence 99999987652 2234556677899999999999999999 77799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+||...+.++...|+++..+-|.|+++||||+ .++.++||||++|++|+|...|+++++.
T Consensus 167 ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 167 ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999655699999999997 6899999999999999999999999875
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-53 Score=365.34 Aligned_cols=204 Identities=29% Similarity=0.449 Sum_probs=181.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||.|++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.++.. ++|+++||+||++.+.+.+|
T Consensus 21 ~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~s 97 (258)
T COG3638 21 KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLS 97 (258)
T ss_pred eeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcccccH
Confidence 4899999999999999999999999999999999994 8999999988754 37889999999999999999
Q ss_pred HHHHHHHHHHhcCch------hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCe
Q psy2520 77 VYEHLYFMALLKLDR------RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 77 v~e~l~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~l 150 (290)
|.+|+..+..-+... ..+ .+....+.++|+++|+.+.+..+ ...|||||+|||+|||||+++|++
T Consensus 98 v~~NVl~grl~~~s~~~slfglfs-k~dk~~Al~aLervgi~~~A~qr--------a~~LSGGQQQRVaIARaL~Q~pki 168 (258)
T COG3638 98 VLENVLLGRLGYTSTWRSLFGLFS-KEDKAQALDALERVGILDKAYQR--------ASTLSGGQQQRVAIARALVQQPKI 168 (258)
T ss_pred HHHHHHhhhcccchHHHHHhCCCC-HHHHHHHHHHHHHcCcHHHHHHH--------hccCCcchhHHHHHHHHHhcCCCE
Confidence 999999875332211 112 23345678899999999998888 566999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+|.|||+++|||.++.++|+.|++++++.|.|||++.|+. +.+.++|||++-|++|+++|+|++.++-+
T Consensus 169 ILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 9999999999999999999999999888999999999997 57899999999999999999999987543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-52 Score=366.22 Aligned_cols=201 Identities=31% Similarity=0.500 Sum_probs=174.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc-ccccEEEEccCC---CCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-FRSACGFMYQHD---LFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~-~~~~ig~v~Q~~---~~~~~lTv~e 79 (290)
.||||++++|++++|+||||||||||+|+|+|+++|. +|+|.++|++.... -+..||||||.. .-|| +||+|
T Consensus 21 ~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d 96 (254)
T COG1121 21 EDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKD 96 (254)
T ss_pred eccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHH
Confidence 5899999999999999999999999999999999994 89999999987653 246799999953 3344 69999
Q ss_pred HHHHHHHhcCc--hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLD--RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
.+.++...+.. ... ..+..+.+.++|+.+|+.+.+++++++ |||||+|||.|||||+++|++|+|||||
T Consensus 97 ~V~~g~~~~~g~~~~~-~~~d~~~v~~aL~~Vgm~~~~~r~i~~--------LSGGQ~QRV~lARAL~~~p~lllLDEP~ 167 (254)
T COG1121 97 VVLLGRYGKKGWFRRL-NKKDKEKVDEALERVGMEDLRDRQIGE--------LSGGQKQRVLLARALAQNPDLLLLDEPF 167 (254)
T ss_pred HHHccCcccccccccc-cHHHHHHHHHHHHHcCchhhhCCcccc--------cCcHHHHHHHHHHHhccCCCEEEecCCc
Confidence 99987433221 111 223357789999999999999999665 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+|+|+.++..|+++|++++++ |+||++||||+ ..+..+||+|+.| ++++++.|+++++++
T Consensus 168 ~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL-~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 168 TGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDL-GLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred ccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCc-HHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 999999999999999999666 99999999998 4799999999999 578899999998764
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=355.51 Aligned_cols=205 Identities=25% Similarity=0.399 Sum_probs=180.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPD--DCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~--~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.+||+.|.+++++|+||||||||||||++++.+... ..+.+|+|.++|+++.. .+|++||+|||.|.-|| +
T Consensus 24 ~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~ 102 (253)
T COG1117 24 KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-M 102 (253)
T ss_pred ccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-c
Confidence 489999999999999999999999999999987653 34578999999999864 47999999999999999 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|++||++|+.+++.... ....+.++..|+...|++.-..++..+ +.+||||||||++|||||+.+|+||||||
T Consensus 103 SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s----a~~LSGGQQQRLcIARalAv~PeVlLmDE 175 (253)
T COG1117 103 SIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS----ALGLSGGQQQRLCIARALAVKPEVLLMDE 175 (253)
T ss_pred hHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC----ccCCChhHHHHHHHHHHHhcCCcEEEecC
Confidence 99999999998875432 445577888999999876554444443 56799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+|||.+..+|-+++.+++ + ..|||+|||++ ..+.+.+|+..++..|+++++|++++++
T Consensus 176 PtSALDPIsT~kIEeLi~eLk-~-~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 176 PTSALDPISTLKIEELITELK-K-KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred cccccCchhHHHHHHHHHHHH-h-ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999994 3 68999999998 5899999999999999999999999765
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-52 Score=350.13 Aligned_cols=200 Identities=27% Similarity=0.425 Sum_probs=183.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||||+++.||+++|+|||||||||+|++|++++.|+ +|.|+++|.+... ..|++||.++.+..+|..||++||
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEn 95 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAREN 95 (245)
T ss_pred hheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHH
Confidence 4899999999999999999999999999999999995 8999999998754 478999999988899999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
|.|++.++.. ...+..++++++.+.++|.+++|+++++ +|.||||||+|||||+++|++++|||||+||
T Consensus 96 l~~Fa~L~~l---~~~~~kari~~l~k~l~l~~~~~rRv~~--------~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 96 LKYFARLNGL---SRKEIKARIAELSKRLQLLEYLDRRVGE--------FSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHhhh---hhhHHHHHHHHHHHHhChHHHHHHHHhh--------hchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 9999988754 3444567788999999999999999655 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|..++..+.+.++++ ++.|++||++||.+ .++..+||+++++++|++++.|+++.+.
T Consensus 165 Di~~~r~~~dfi~q~-k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~ 221 (245)
T COG4555 165 DIRTRRKFHDFIKQL-KNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALD 221 (245)
T ss_pred cHHHHHHHHHHHHHh-hcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHH
Confidence 999999999999999 55699999999997 5899999999999999999999998764
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-51 Score=381.95 Aligned_cols=201 Identities=21% Similarity=0.339 Sum_probs=180.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.. ..++.||||||++.+||++||+||+
T Consensus 21 ~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (356)
T PRK11650 21 KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENM 97 (356)
T ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHH
Confidence 3799999999999999999999999999999999994 8999999999854 2357899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. ....+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 98 ~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~--------~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD 166 (356)
T PRK11650 98 AYGLKIRG---MPKAEIEERVAEAARILELEPLLDRK--------PRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166 (356)
T ss_pred HhHHhhcC---CCHHHHHHHHHHHHHHcCChhHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99865432 12333446688999999999999998 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+.+.|+++.++.|.|+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 167 ~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 167 AKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999665699999999997 5899999999999999999999999875
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=362.25 Aligned_cols=202 Identities=25% Similarity=0.358 Sum_probs=180.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC-CCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD-LFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~-~~~~~lTv 77 (290)
+++|+.+++|+.++|+||||||||||+++++|+++|. +|.|.++|.++.. .+++++|||||++ ..+..-||
T Consensus 21 ~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV 97 (235)
T COG1122 21 KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTV 97 (235)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcH
Confidence 4899999999999999999999999999999999994 7999999998762 4789999999995 44555699
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
.+.++|+...... +.++..+++.++++.+|+.+.+++. +..|||||||||+||.+|+++|++|||||||
T Consensus 98 ~~evafg~~n~g~---~~~e~~~rv~~~l~~vgl~~~~~r~--------p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt 166 (235)
T COG1122 98 EDEVAFGLENLGL---PREEIEERVAEALELVGLEELLDRP--------PFNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166 (235)
T ss_pred HHHHhhchhhcCC---CHHHHHHHHHHHHHHcCchhhccCC--------ccccCCcceeeHHhhHHHHcCCCEEEEcCCC
Confidence 9999999875432 3334667889999999999999998 5569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||+.++..+++++++++.+.|+|||++|||+ +.+..+|||+++|++|+++++|+|.+++.
T Consensus 167 a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999999999999999666689999999997 58999999999999999999999987764
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=378.10 Aligned_cols=201 Identities=24% Similarity=0.399 Sum_probs=179.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. ..++.|||+||+..+++.+|
T Consensus 22 ~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t 98 (343)
T TIGR02314 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence 5899999999999999999999999999999999994 8999999999853 14678999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.|...... ....+..+++.++++.+||.+..+++ +.+|||||||||+|||||+.+|++||||||
T Consensus 99 v~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~--------~~~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 99 VFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSY--------PSNLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCC--------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 9999998765432 12334455678999999999988888 556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|++||+.++..++++|++++++.|.|||++||++ +.+.++||++++|++|+++..|++++++
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999655689999999997 5788999999999999999999998775
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=372.32 Aligned_cols=201 Identities=32% Similarity=0.415 Sum_probs=178.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++.. ..++.+||+||++.+++.+||+||
T Consensus 24 ~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~ 100 (306)
T PRK13537 24 DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVREN 100 (306)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHH
Confidence 4899999999999999999999999999999999994 8999999999854 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.|....+.. ...+..+++.++++.++|.+..+++ ++.||||||||++||+||+++|++|||||||+||
T Consensus 101 l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gL 169 (306)
T PRK13537 101 LLVFGRYFGL---SAAAARALVPPLLEFAKLENKADAK--------VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGL 169 (306)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHcCCchHhcCc--------hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCC
Confidence 9987655422 2222344578899999999888888 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+.++..++++|++++ ++|+|||++||++ .++.++||+|++|++|++++.|+++++..
T Consensus 170 D~~~~~~l~~~l~~l~-~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 170 DPQARHLMWERLRSLL-ARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999994 4589999999997 58999999999999999999999997753
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-51 Score=341.66 Aligned_cols=200 Identities=27% Similarity=0.424 Sum_probs=180.1
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
..+++|..||++||+||||||||||||+|+|+..|. +|+|+|||++.+. -..+-++++||+.++|..+||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 467889999999999999999999999999999994 8999999999865 35677999999999999999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
++..-.. +.. ...+++++.++..+||..+.++. +.+|||||||||+|||+|+++-+|||||||+|+|||
T Consensus 94 LGl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RL--------P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP 162 (231)
T COG3840 94 LGLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRL--------PGELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162 (231)
T ss_pred ccCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhC--------ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCH
Confidence 8764221 122 23446688999999999999999 556999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.-+.+++.++.+++.+++.|+++|||++ +++.+++|+++++++|+|.+.|+..+.+
T Consensus 163 ~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 163 ALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999999999999998 5899999999999999999999998654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=378.76 Aligned_cols=202 Identities=25% Similarity=0.390 Sum_probs=181.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.. ..++.+|||||+..+||.+||+||+
T Consensus 21 ~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (353)
T TIGR03265 21 KDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI 97 (353)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHH
Confidence 3799999999999999999999999999999999994 8999999999864 2457899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. ....+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 98 ~~~~~~~~---~~~~~~~~~~~~~l~~l~L~~~~~~~--------~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD 166 (353)
T TIGR03265 98 AYGLKNRG---MGRAEVAERVAELLDLVGLPGSERKY--------PGQLSGGQQQRVALARALATSPGLLLLDEPLSALD 166 (353)
T ss_pred HHHHHhcC---CCHHHHHHHHHHHHHHcCCCchhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99865432 12334456788999999999999988 56699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+.++.++.+.|+++.++.|.|+|++|||+ .++..+||++++|++|+++..|++++++.
T Consensus 167 ~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 167 ARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999666689999999997 58899999999999999999999997753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=377.55 Aligned_cols=201 Identities=25% Similarity=0.349 Sum_probs=180.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.. ..++.+|||||++.+||++||+||+
T Consensus 23 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi 99 (351)
T PRK11432 23 DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENV 99 (351)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999995 8999999999864 2457899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. ....+..+++.++++.++|.+..++. +..|||||||||+|||||+.+|++|||||||++||
T Consensus 100 ~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~--------~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD 168 (351)
T PRK11432 100 GYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRY--------VDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168 (351)
T ss_pred HHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 99875432 12334456788999999999988888 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+..+.++.+.|+++.++.|.|+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 169 ~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 169 ANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999665689999999997 5889999999999999999999999875
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=340.37 Aligned_cols=195 Identities=29% Similarity=0.384 Sum_probs=177.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||.+++||++-|+||||||||||||+|.+..+|+ +|+|+++|.++.. .+|++||+||||..+.+..|
T Consensus 19 ~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~t 95 (223)
T COG2884 19 RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRT 95 (223)
T ss_pred hCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccch
Confidence 5899999999999999999999999999999999994 8999999999864 37899999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||++|....... +..+..+++.++|+.+||.+.++.. |.+|||||||||+||||++.+|++||.|||
T Consensus 96 vyeNVA~pL~v~G~---~~~~i~~rV~~~L~~VgL~~k~~~l--------P~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 96 VYENVALPLRVIGK---PPREIRRRVSEVLDLVGLKHKARAL--------PSQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred HhhhhhhhhhccCC---CHHHHHHHHHHHHHHhccchhhhcC--------ccccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 99999998876543 3345567889999999999999888 677999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
|.+|||....+|++++.++ ...|+||+++|||. ..+..+-.|++.+++|+++.+..
T Consensus 165 TGNLDp~~s~~im~lfeei-nr~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 165 TGNLDPDLSWEIMRLFEEI-NRLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred CCCCChHHHHHHHHHHHHH-hhcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999 56799999999996 56777889999999999987643
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=377.25 Aligned_cols=201 Identities=26% Similarity=0.394 Sum_probs=180.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cc----cccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KF----RSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~----~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. .+ ++.+|||||++.++|.+
T Consensus 10 ~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred EeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 5899999999999999999999999999999999994 8999999999864 23 67899999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||+||+.|+..... ....+..+++.++++.+||.++.+++ +.+|||||||||+|||||+.+|++|||||
T Consensus 87 TV~eNi~~~~~~~~---~~~~~~~~~~~~~l~~vgL~~~~~~~--------p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 87 TILQNTSLGPELLG---WPEQERKEKALELLKLVGLEEYEHRY--------PDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCchhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999865432 12334456788999999999888888 55699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||++||+.++..+.+.|.+++++.|+|||++|||+ .++.++||+|++|++|+++..|++++++
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999655689999999997 5789999999999999999999998875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=356.04 Aligned_cols=202 Identities=29% Similarity=0.455 Sum_probs=175.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+|
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT 93 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCc
Confidence 4899999999999999999999999999999999984 8999999998743 24678999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|.||+.++...... .......+++.++++.+++.+..++. +.+|||||||||+|||||+.+|++||||||
T Consensus 94 v~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~ia~al~~~p~llllDEP 163 (235)
T cd03261 94 VFENVAFPLREHTR--LSEEEIREIVLEKLEAVGLRGAEDLY--------PAELSGGMKKRVALARALALDPELLLYDEP 163 (235)
T ss_pred HHHHHHHHHhhccC--CCHHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 99999986543211 12223345678899999998888887 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+++.|++++++.|+|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 164 TAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 9999999999999999999554589999999997 4788899999999999999999988653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=352.21 Aligned_cols=199 Identities=29% Similarity=0.389 Sum_probs=176.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC--CCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD--LFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~--~~~~~lT 76 (290)
.||||++.+||+++|+|+||||||||.++|+|+.+|+ +|+|.++|+++.. .+++.|-+||||+ .+.|..|
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 4899999999999999999999999999999999995 8999999988765 3578899999996 6789999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|++.|.-........ .. .+++.++++.+||. .+++++ +.+|||||+|||+|||||+.+|++|||||
T Consensus 101 v~~~l~Epl~~~~~~---~~--~~~i~~~L~~VgL~~~~l~R~--------P~eLSGGQ~QRiaIARAL~~~PklLIlDE 167 (252)
T COG1124 101 VGRILSEPLRPHGLS---KS--QQRIAELLDQVGLPPSFLDRR--------PHELSGGQRQRIAIARALIPEPKLLILDE 167 (252)
T ss_pred HHHHHhhhhccCCcc---HH--HHHHHHHHHHcCCCHHHHhcC--------chhcChhHHHHHHHHHHhccCCCEEEecC
Confidence 999988766543221 11 23378999999996 467777 66699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+||+..+.+|+++|.+++++.+.|+|++|||. ..+..+||||++|++|+++..++..+++
T Consensus 168 ptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 168 PTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred chhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999999999888899999999997 5789999999999999999999999775
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-50 Score=368.68 Aligned_cols=201 Identities=28% Similarity=0.338 Sum_probs=177.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+||+||++.+++.+||+||
T Consensus 10 ~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 4899999999999999999999999999999999994 8999999998753 346789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....+.. ......+++.++++.++|.+..+++ +..|||||||||+||+||+.+|++|||||||+||
T Consensus 87 l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 87 LEMMGRLYGL---PKDEAEERAEELLELFELGEAADRP--------VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHcCChhHhCCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 9987654321 1222334678899999999888888 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+.++..++++|++++ +.|.|||++||++ .++.++||++++|++|++++.|+++++..
T Consensus 156 D~~~~~~l~~~l~~~~-~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 156 DPRTRRAIWDYIRALK-EEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999995 4589999999997 57889999999999999999999987654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-50 Score=376.05 Aligned_cols=201 Identities=24% Similarity=0.383 Sum_probs=179.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCc--cEEEECCEecCc--cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIID--GDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~--G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++.+||+++|+|||||||||||++|+|+.+|+ + |+|.++|+++.. ..++.+|||||++.+||.+||+|
T Consensus 22 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~e 98 (362)
T TIGR03258 22 DDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVED 98 (362)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHH
Confidence 4799999999999999999999999999999999994 7 999999999854 23568999999999999999999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.|+...+. ....+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++
T Consensus 99 nl~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~--------~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~ 167 (362)
T TIGR03258 99 NVAFGLRAQK---MPKADIAERVADALKLVGLGDAAAHL--------PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSA 167 (362)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHhcCCCchhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 9999875432 22334445688999999999999998 556999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcC-CcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQR-KKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~-g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+..+.++.+.|+++.++. |.|+|++|||+ .++..+||+|++|++|+++..|+++++.
T Consensus 168 LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 168 LDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999996554 89999999997 5889999999999999999999999875
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-50 Score=374.46 Aligned_cols=204 Identities=27% Similarity=0.430 Sum_probs=179.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. ..++.+||+||++.++|.+||+||+
T Consensus 19 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni 95 (353)
T PRK10851 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNI 95 (353)
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHH
Confidence 4799999999999999999999999999999999994 8999999999854 2356799999999999999999999
Q ss_pred HHHHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 82 YFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
.|+...... ......+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||+||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~--------~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~L 167 (353)
T PRK10851 96 AFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY--------PAQLSGGQKQRVALARALAVEPQILLLDEPFGAL 167 (353)
T ss_pred HhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 997653210 0112333455788999999999988888 5569999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+.++..+.+.|++++++.|+|+|++|||+ .++..+||++++|++|+++..|++++++
T Consensus 168 D~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 168 DAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999665689999999997 5889999999999999999999999875
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-50 Score=426.92 Aligned_cols=272 Identities=27% Similarity=0.381 Sum_probs=227.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-CCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD-CIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~-~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+|+.+++||+++|+||||||||||||+|+|+.++. ...+|+|.+||+++.. .+++.++|++|++.+++.+||+|
T Consensus 78 ~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E 157 (1394)
T TIGR00956 78 KPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGE 157 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHH
Confidence 5899999999999999999999999999999987321 1158999999998753 35667999999999999999999
Q ss_pred HHHHHHHhcCch----hhhHHHHHH-HHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 80 HLYFMALLKLDR----RVKAYQRIA-LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 80 ~l~~~~~~~~~~----~~~~~~~~~-~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
++.|++.++.+. .....+..+ .++.+++.+||.+.+++++|++. +++|||||||||+||++|+.+|++++||
T Consensus 158 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~---~~~LSGGerkRvsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 158 TLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDF---VRGVSGGERKRVSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCc---CCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence 999987765321 112222222 34678999999999999988753 4679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHHHCCCCCCCCCC
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYN 234 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~~~~~~ 234 (290)
|||+|||+.++.++++.|++++++.|+|||+++||+..++.++||++++|++|++++.|+++++.++|++.|++||.+.+
T Consensus 235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n 314 (1394)
T TIGR00956 235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQT 314 (1394)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999999965568999999999867899999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCC-----chhhhHHHHHHHHHHHhhhchhHHhHhhhhh
Q psy2520 235 PADFLIKSLAVTT-----NDELSSRRRLKRICDEFSVCDFAKEVDLEIN 278 (290)
Q Consensus 235 ~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 278 (290)
++||+.+..+... +.+.......+.+++.|+.|+.++++..+++
T Consensus 315 ~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 363 (1394)
T TIGR00956 315 TADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEID 363 (1394)
T ss_pred hHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHH
Confidence 9999998765321 1111112346788899999998877666654
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-50 Score=376.27 Aligned_cols=201 Identities=22% Similarity=0.345 Sum_probs=179.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.+|||||++.+||.+||+||+
T Consensus 31 ~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi 107 (375)
T PRK09452 31 SNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENV 107 (375)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHH
Confidence 3799999999999999999999999999999999994 8999999999854 2457899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. ....+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 108 ~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~--------p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD 176 (375)
T PRK09452 108 AFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRK--------PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176 (375)
T ss_pred HHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCC
Confidence 99865432 12233445678999999999999998 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+..+..+.+.|+++.++.|.|+|++|||+ .++..++|++++|++|+++..|++++++
T Consensus 177 ~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 177 YKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999666699999999997 5889999999999999999999998875
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-50 Score=426.63 Aligned_cols=272 Identities=26% Similarity=0.431 Sum_probs=228.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|+||.++||++++|+||||||||||||+|+|+++|+...+|+|.+||+++.. ..++.++||+|++.+++.+||+|++.
T Consensus 182 ~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~ 261 (1470)
T PLN03140 182 KDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLD 261 (1470)
T ss_pred cCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHH
Confidence 58999999999999999999999999999999998854458999999998854 24678999999999999999999999
Q ss_pred HHHHhcCch-------hhhHHHH------------------------HHHHHHHHHHcCCCCccCcccCCcCCCCCCCCC
Q psy2520 83 FMALLKLDR-------RVKAYQR------------------------IALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131 (290)
Q Consensus 83 ~~~~~~~~~-------~~~~~~~------------------------~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LS 131 (290)
|++.++... .....++ ...++.+++.+||.+++++.+|+.. +++||
T Consensus 262 f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~---~rglS 338 (1470)
T PLN03140 262 FSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM---IRGIS 338 (1470)
T ss_pred HHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc---ccCCC
Confidence 987654211 0001100 1135678999999999999888754 46799
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 132 gGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
|||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++.|+|+|+++||+..+++++||+|++|++|++++
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy 418 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVY 418 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEE
Confidence 99999999999999999999999999999999999999999999665689999999998778999999999999999999
Q ss_pred EcCHHHHHHHHHHCCCCCCCCCChHHHHHHhhcCCCc-hhhhHH------HHHHHHHHHhhhchhHHhHhhhhh
Q psy2520 212 IGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTN-DELSSR------RRLKRICDEFSVCDFAKEVDLEIN 278 (290)
Q Consensus 212 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~ 278 (290)
.|+++++.++|++.|++||.+.+++||+.++.+.... .....+ .....+++.|+.|+.+++...+++
T Consensus 419 ~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~ 492 (1470)
T PLN03140 419 QGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELS 492 (1470)
T ss_pred eCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHh
Confidence 9999999999999999999999999999988753211 100000 235678999999988877665543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=422.52 Aligned_cols=261 Identities=33% Similarity=0.585 Sum_probs=221.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|||+++++|+++||+|||||||||||++|+|+.++...++|+|.+||+++...+++.+|||+|++.+++.+||+||+.|
T Consensus 780 ~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~ 859 (1394)
T TIGR00956 780 NNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRF 859 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHH
Confidence 48999999999999999999999999999999987422247999999999865677889999999989999999999999
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC-eEEEeCCCCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA-LLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~-llllDEPtsgLD~ 162 (290)
++.++.+...+..++.++++++++.++|.+++|+.++++ ..+|||||||||+||++|+.+|+ +|||||||+|||+
T Consensus 860 ~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~----~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~ 935 (1394)
T TIGR00956 860 SAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP----GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDS 935 (1394)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC----CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCH
Confidence 887664433334445567899999999999999998753 23599999999999999999997 9999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCC-eEEEEcCH----HHHHHHHHHCCC-CCCCCCChH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS-RTAFIGSK----DAALAFLESQGY-PCPYGYNPA 236 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G-~i~~~g~~----~~~~~~~~~~g~-~~~~~~~~~ 236 (290)
.++..+++.|++++ ++|+|||+++||+...+.+.||++++|++| ++++.|++ .++.++|+..|+ +||...||+
T Consensus 936 ~~~~~i~~~L~~la-~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpA 1014 (1394)
T TIGR00956 936 QTAWSICKLMRKLA-DHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPA 1014 (1394)
T ss_pred HHHHHHHHHHHHHH-HcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHH
Confidence 99999999999995 458999999999975567889999999987 99999997 567899999996 999999999
Q ss_pred HHHHHhhcCCCchhhhHHHHHHHHHHHhhhchhHHhHh
Q psy2520 237 DFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVD 274 (290)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 274 (290)
||+++.+....... ..+.+.+.|+.|+.++.+.
T Consensus 1015 d~~ldvi~~~~~~~-----~~~~~~~~~~~s~~~~~~~ 1047 (1394)
T TIGR00956 1015 EWMLEVIGAAPGAH-----ANQDYHEVWRNSSEYQAVK 1047 (1394)
T ss_pred HHHHHHhhcccccc-----hhccHHHHHhcCHHHHHHH
Confidence 99999876433221 1234567777777665543
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=369.45 Aligned_cols=201 Identities=33% Similarity=0.415 Sum_probs=178.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..++.+||+||++.+++.+||+||
T Consensus 58 ~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~ 134 (340)
T PRK13536 58 NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVREN 134 (340)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHH
Confidence 4899999999999999999999999999999999995 8999999999754 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....+.. ...+..+.+.++++.++|.+..++++ ..|||||||||+||+||+++|++|||||||+||
T Consensus 135 l~~~~~~~~~---~~~~~~~~~~~ll~~~~L~~~~~~~~--------~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gL 203 (340)
T PRK13536 135 LLVFGRYFGM---STREIEAVIPSLLEFARLESKADARV--------SDLSGGMKRRLTLARALINDPQLLILDEPTTGL 203 (340)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHcCCchhhCCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 9986654321 12223345678999999999899884 459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+.++..++++|+++++ .|+|||++||++ .++.++||+|++|++|++++.|+++++..
T Consensus 204 D~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 204 DPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999954 599999999997 58899999999999999999999998754
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=374.15 Aligned_cols=201 Identities=24% Similarity=0.359 Sum_probs=180.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|+++|+++.. ..++.+||+||++.+||.+||+||+
T Consensus 36 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi 112 (377)
T PRK11607 36 DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNI 112 (377)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHH
Confidence 4799999999999999999999999999999999995 8999999998854 3467899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. ....+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 113 ~~~l~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~--------~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD 181 (377)
T PRK11607 113 AFGLKQDK---LPKAEIASRVNEMLGLVHMQEFAKRK--------PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181 (377)
T ss_pred HHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99865432 12334456688999999999998988 56699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+..+..+.+.|+++.++.|.|+|++|||+ .++..++|++++|++|+++..|+++++.
T Consensus 182 ~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 182 KKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999998666689999999997 5889999999999999999999999875
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=344.21 Aligned_cols=203 Identities=26% Similarity=0.441 Sum_probs=184.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.+|||.+++||+++++|||||||||.+.++.|+.+|+ +|+|+++|.+++. ..|..|||+||++..|..+||+
T Consensus 21 ~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~ 97 (243)
T COG1137 21 NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVE 97 (243)
T ss_pred eeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHH
Confidence 4799999999999999999999999999999999995 8999999999976 3566799999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+......+... ....++..+++++|+.|++.+.++++ ..+||||||+|+.|||||+.+|+++|||||++
T Consensus 98 dNi~~vlE~~~~d-~~~~~~~~~l~~LL~ef~i~hlr~~~--------a~sLSGGERRR~EIARaLa~~P~fiLLDEPFA 168 (243)
T COG1137 98 DNIMAVLEIREKD-LKKAERKEELDALLEEFHITHLRDSK--------AYSLSGGERRRVEIARALAANPKFILLDEPFA 168 (243)
T ss_pred HHHHHHHhhhhcc-hhHHHHHHHHHHHHHHhchHHHhcCc--------ccccccchHHHHHHHHHHhcCCCEEEecCCcc
Confidence 9999887765422 12334556688999999999999998 66799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+||.+..+|.++++.+ +++|..|+++-|+.. +...+|||.+++++|+++++|+|+++..
T Consensus 169 GVDPiaV~dIq~iI~~L-~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 169 GVDPIAVIDIQRIIKHL-KDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred CCCchhHHHHHHHHHHH-HhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999 567999999999975 8899999999999999999999998763
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=345.49 Aligned_cols=195 Identities=30% Similarity=0.445 Sum_probs=169.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.. ..++.++|+||++.+++.+|++||+
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 93 (213)
T cd03259 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENI 93 (213)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHH
Confidence 5899999999999999999999999999999999984 8999999998753 2456799999998899999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.+....... ......+.+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 94 ~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD 162 (213)
T cd03259 94 AFGLKLRGV---PKAEIRARVRELLELVGLEGLLNRY--------PHELSGGQQQRVALARALAREPSLLLLDEPLSALD 162 (213)
T ss_pred HhHHHHcCC---CHHHHHHHHHHHHHHcCChhhhhcC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 886543211 1222334578899999998888887 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
+.++..++++|++++++.|.|||++||++ .++.++||++++|++|++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 163 AKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999999998554589999999997 5788999999999999998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=372.04 Aligned_cols=201 Identities=25% Similarity=0.374 Sum_probs=178.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.+||+||++.+++.+||+||+
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni 96 (369)
T PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENM 96 (369)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHH
Confidence 4899999999999999999999999999999999994 8999999998854 2356799999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+.. ...+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 97 ~~~~~~~~~---~~~~~~~~~~~~l~~lgL~~~~~~~--------~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD 165 (369)
T PRK11000 97 SFGLKLAGA---KKEEINQRVNQVAEVLQLAHLLDRK--------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 (369)
T ss_pred HhHHhhcCC---CHHHHHHHHHHHHHHcCChhhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 997654321 2233345678999999999888888 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+.+.|+++.++.|.|+|++||++ .++..+||++++|++|+++..|++++++
T Consensus 166 ~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 166 AALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999655689999999997 5788999999999999999999998775
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-50 Score=358.93 Aligned_cols=201 Identities=28% Similarity=0.389 Sum_probs=186.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------c-ccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------K-FRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~-~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||+++.|||+.|+|-||||||||+++++++.+|+ +|+|+++|+++.. . .++++++|||+..++|+.
T Consensus 45 ~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred ccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 5899999999999999999999999999999999994 8999999999854 2 357899999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||.||..|+...+. +.+.++.+++.++++.+||..+.+++ +.+|||||||||.|||||+.+|+|||+||
T Consensus 122 tVl~Nv~fGLev~G---v~~~er~~~a~~~l~~VgL~~~~~~y--------p~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 122 TVLENVAFGLEVQG---VPKAEREERALEALELVGLEGYADKY--------PNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred hHhhhhhcceeecC---CCHHHHHHHHHHHHHHcCchhhhhcC--------cccccchHHHHHHHHHHHccCCCEEEecC
Confidence 99999999988765 35567778899999999999999999 56699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|+|||--+.++.+.|.++.++-.+|||++|||+ +|+.++.|||.+|++|+++..|+|++++
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhccceEEEecCCeEEEeCCHHHHH
Confidence 99999999999999999999777789999999998 5899999999999999999999999986
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=355.63 Aligned_cols=213 Identities=23% Similarity=0.390 Sum_probs=178.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCC-CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDL-FSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~-~~~~lT 76 (290)
.||||+|.+||+++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.+||+||++. .+...|
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 24 DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 4899999999999999999999999999999999994 8999999999853 24578999999863 334579
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC--CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM--NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
|+||+.|+..... ....+..+++.++++.+||. +..++. +..||||||||++|||||+.+|++||||
T Consensus 101 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~~LSgGq~qrv~iAraL~~~P~llllD 169 (287)
T PRK13637 101 IEKDIAFGPINLG---LSEEEIENRVKRAMNIVGLDYEDYKDKS--------PFELSGGQKRRVAIAGVVAMEPKILILD 169 (287)
T ss_pred HHHHHHhHHHHCC---CCHHHHHHHHHHHHHHcCCCchhhccCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999998754322 12233445678999999997 667777 5569999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCCCC
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPCPY 231 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~~~ 231 (290)
|||+|||+.++..++++|++++++.|.|||++||++ .++..+|||+++|++|++++.|++++++. .+...++..|.
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 170 EPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999999999999655589999999997 57888999999999999999999998754 23344555443
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-49 Score=345.66 Aligned_cols=199 Identities=28% Similarity=0.406 Sum_probs=173.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+++.++|+||++.+++.+||+||
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (220)
T cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWEN 93 (220)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHH
Confidence 4799999999999999999999999999999999984 8999999988743 345679999999989999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....+.. ...+..+.+.++++.+++.+..+++ +.+|||||||||+||+||+.+|+++||||||+||
T Consensus 94 l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qr~~la~al~~~p~llllDEPt~~L 162 (220)
T cd03265 94 LYIHARLYGV---PGAERRERIDELLDFVGLLEAADRL--------VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGL 162 (220)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 9987544321 1222334578899999998888888 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
|+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|+++..|++++
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 163 DPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 999999999999999554589999999997 57888999999999999999988765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-50 Score=347.47 Aligned_cols=204 Identities=27% Similarity=0.382 Sum_probs=182.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.||||++++||+++||||||||||||+|+|+|+++|+ +|+|.++|++++. ..+..|+--||...+|++|||.
T Consensus 21 ~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVl 97 (250)
T COG0411 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVL 97 (250)
T ss_pred eceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHH
Confidence 5899999999999999999999999999999999995 7999999999975 2466799999999999999999
Q ss_pred HHHHHHHHhcC--------ch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 79 EHLYFMALLKL--------DR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 79 e~l~~~~~~~~--------~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
||+..+...+. +. .....+..+++.++|+.+||.+.++++ ..+||+|||+|+.|||||+.+|+
T Consensus 98 ENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~--------A~~LsyG~qR~LEIArALa~~P~ 169 (250)
T COG0411 98 ENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRP--------AGNLSYGQQRRLEIARALATQPK 169 (250)
T ss_pred HHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcch--------hhcCChhHhHHHHHHHHHhcCCC
Confidence 99998755321 11 113445567789999999999999999 55599999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+||||||.+||.+....++.+.|++++++.|.||++|.||+ ..+..+||||++|+.|+++++|+|+++.
T Consensus 170 lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 170 LLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred EEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 99999999999999999999999999665689999999998 5899999999999999999999999875
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-49 Score=367.03 Aligned_cols=201 Identities=24% Similarity=0.416 Sum_probs=177.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+||+||++.+++.+|
T Consensus 22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~t 98 (343)
T PRK11153 22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCc
Confidence 5899999999999999999999999999999999994 8999999998853 13578999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|.||+.+....... ...+..+++.++++.+||.+..+++ +.+|||||||||+|||||+.+|++||||||
T Consensus 99 v~eni~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~--------~~~LSgGq~qRv~lAraL~~~p~iLlLDEP 167 (343)
T PRK11153 99 VFDNVALPLELAGT---PKAEIKARVTELLELVGLSDKADRY--------PAQLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchhhhCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99999987654321 2223345678899999999888888 556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..++++|++++++.|+|||++||++ .++.++||++++|++|++++.|++++++
T Consensus 168 ts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 168 TSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999655689999999997 5788899999999999999999988764
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-49 Score=348.66 Aligned_cols=204 Identities=28% Similarity=0.421 Sum_probs=174.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.++|++|++.+++.+||.||+
T Consensus 19 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 95 (239)
T cd03296 19 DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNV 95 (239)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHH
Confidence 4899999999999999999999999999999999984 8999999998753 2346799999999999999999999
Q ss_pred HHHHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 82 YFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
.++...... .........+.+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEP~~~L 167 (239)
T cd03296 96 AFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY--------PAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 167 (239)
T ss_pred hhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 986543211 0001122334577899999998878877 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+.++..+.++|++++++.|+|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 168 D~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 168 DAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999654589999999997 4788899999999999999999988653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-49 Score=360.66 Aligned_cols=201 Identities=34% Similarity=0.449 Sum_probs=175.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.+||+||++.+++.+||+||
T Consensus 21 ~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 97 (303)
T TIGR01288 21 NDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVREN 97 (303)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHH
Confidence 5899999999999999999999999999999999984 8999999998743 246789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....+.. ......+.+.++++.+++.+..+++ +..|||||||||+||+||+.+|++|||||||+||
T Consensus 98 l~~~~~~~~~---~~~~~~~~~~~ll~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 166 (303)
T TIGR01288 98 LLVFGRYFGM---STREIEAVIPSLLEFARLESKADVR--------VALLSGGMKRRLTLARALINDPQLLILDEPTTGL 166 (303)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHCCChhHhcCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 9875543321 1222234567899999999888888 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+.++..++++|+++++ .|.|||++||++ .++..+||++++|++|+++..|+++++..
T Consensus 167 D~~~~~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 167 DPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999954 589999999997 57889999999999999999999987653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=347.24 Aligned_cols=203 Identities=29% Similarity=0.426 Sum_probs=174.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. . .+..++|+||++.+++.+||+
T Consensus 17 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (236)
T cd03219 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL 93 (236)
T ss_pred cCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence 4799999999999999999999999999999999984 8999999998753 1 245699999999999999999
Q ss_pred HHHHHHHHhcCchhh-------hHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 79 EHLYFMALLKLDRRV-------KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 79 e~l~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+.++......... ......+.+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~ll 165 (236)
T cd03219 94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP--------AGELSYGQQRRLEIARALATDPKLL 165 (236)
T ss_pred HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999987543211100 1122345678899999998888887 4559999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..++++|+++++ .|+|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 166 LLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 99999999999999999999999954 689999999997 5788899999999999999999988653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=343.43 Aligned_cols=196 Identities=29% Similarity=0.422 Sum_probs=171.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .++.++|+||++.+++.+||+||+.+
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG-PGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc-ccCcEEEEecccccccCCCHHHHHHH
Confidence 4899999999999999999999999999999999884 8999999998753 45679999999988998999999998
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....+.. ......+.+.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+|||+.
T Consensus 97 ~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~ 165 (220)
T cd03293 97 GLELQGV---PKAEARERAEELLELVGLSGFENAY--------PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDAL 165 (220)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHH
Confidence 7543321 1222345678899999998888877 4569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe--CCeEEEEcCH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--DSRTAFIGSK 215 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~--~G~i~~~g~~ 215 (290)
++..+++.|++++++.|.|||++||++ .++..+||++++|+ +|+++..++.
T Consensus 166 ~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 166 TREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999998555589999999997 47888999999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=416.61 Aligned_cols=264 Identities=31% Similarity=0.568 Sum_probs=222.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|||++++||++++|+|||||||||||++|+|+.++. ..+|+|.+||.+... .+++.+|||+|++.+++.+||+|++.
T Consensus 897 ~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~ 975 (1470)
T PLN03140 897 REVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLI 975 (1470)
T ss_pred eCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHH
Confidence 4899999999999999999999999999999997642 258999999998754 35678999999999999999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
|++.++.+...+..++.+.++++++.++|.+.+++.+|.+. +++|||||||||+||++|+.+|++|||||||+|||+
T Consensus 976 ~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~---~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~ 1052 (1470)
T PLN03140 976 YSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPG---VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1052 (1470)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCC---CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 98766543333334455678999999999999999987642 256999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC-CeEEEEcCH----HHHHHHHHHC-CCC-CCCCCCh
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-SRTAFIGSK----DAALAFLESQ-GYP-CPYGYNP 235 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~-G~i~~~g~~----~~~~~~~~~~-g~~-~~~~~~~ 235 (290)
.++..+++.|++++ +.|+|||+++||++.++.+.||++++|++ |++++.|++ .++.+||++. |.+ ||...||
T Consensus 1053 ~~a~~v~~~L~~l~-~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NP 1131 (1470)
T PLN03140 1053 RAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNP 1131 (1470)
T ss_pred HHHHHHHHHHHHHH-HCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCc
Confidence 99999999999995 45899999999997567899999999996 899999996 5788999996 664 9999999
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHHHhhhchhHHhHhhhh
Q psy2520 236 ADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEI 277 (290)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 277 (290)
+||++++.....+. .....+++.|+.|+.++++...+
T Consensus 1132 Ad~~l~v~~~~~~~-----~~~~d~~~~~~~s~~~~~~~~~~ 1168 (1470)
T PLN03140 1132 ATWMLEVSSLAAEV-----KLGIDFAEHYKSSSLYQRNKALV 1168 (1470)
T ss_pred hhhhhhhhcccccc-----cccchHHHHHhccHHHHHHHHHH
Confidence 99999886532211 11235788899999888766544
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=344.38 Aligned_cols=190 Identities=28% Similarity=0.418 Sum_probs=165.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+|
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (216)
T TIGR00960 20 DNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRT 96 (216)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccccccc
Confidence 4899999999999999999999999999999999984 8999999998742 14568999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|.||+.+....... ......+++.++++.+++.+..++. +.+|||||||||+|||||+.+|++||||||
T Consensus 97 v~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 97 VYDNVAFPLRIIGV---PPRDANERVSAALEKVGLEGKAHAL--------PMQLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999987543321 1122345678899999998888887 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
|+|||+.++..+.+.|++++ +.|.|||++||++ .++..+||++++|++|++
T Consensus 166 t~~LD~~~~~~l~~~l~~~~-~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFN-RRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999995 4589999999997 578889999999999974
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=345.30 Aligned_cols=200 Identities=24% Similarity=0.389 Sum_probs=174.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..++.++|+||++.+++.+|
T Consensus 22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 4789999999999999999999999999999999984 7999999998753 13567999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
++||+.+....+.. ........+.++++.+++.+..++. +..|||||||||+|||||+.+|+++|||||
T Consensus 99 ~~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (233)
T cd03258 99 VFENVALPLEIAGV---PKAEIEERVLELLELVGLEDKADAY--------PAQLSGGQKQRVGIARALANNPKVLLCDEA 167 (233)
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHCCChhhhhcC--------hhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 99999886543321 1222345678899999998888887 456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|+|||+.++..+.+.|++++++.|+|||++||++ .++..+||++++|++|+++..|+++++
T Consensus 168 ~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 168 TSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999998555589999999997 578889999999999999999988765
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=352.84 Aligned_cols=212 Identities=21% Similarity=0.342 Sum_probs=179.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCC-CCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHD-LFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~-~~~~~lTv~ 78 (290)
.|+||+|++||+++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.+||+||++ .+++.+||.
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (279)
T PRK13650 24 NDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE 100 (279)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence 4899999999999999999999999999999999994 8999999999853 3567899999996 467778999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.|+..... ....+..+++.++++.++|.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 101 eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~--------~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~ 169 (279)
T PRK13650 101 DDVAFGLENKG---IPHEEMKERVNEALELVGMQDFKERE--------PARLSGGQKQRVAIAGAVAMRPKIIILDEATS 169 (279)
T ss_pred HHHHhhHHhCC---CCHHHHHHHHHHHHHHCCCHhHhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 99998754321 12233345678899999999888888 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCCCC
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPCPY 231 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~~~ 231 (290)
|||+.++..+++.|++++++.|+|||++||++. ++ .+||++++|++|+++..|+++++.. .+...++..|.
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13650 170 MLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLGLDIPF 243 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHcChHHHHHcCCCCcH
Confidence 999999999999999995555899999999974 56 5899999999999999999987653 34445555443
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=355.63 Aligned_cols=219 Identities=25% Similarity=0.362 Sum_probs=183.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCC--CCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHD--LFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~--~~~~ 73 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|+ +|+|+++|.++.. .+++.+|||||++ .+++
T Consensus 23 ~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 23 FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 4899999999999999999999999999999999994 8999999998741 2467899999986 4555
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
.||.||+.|+..... ....+..+++.++++.++|. +..++. +..||||||||++|||+|+.+|++||
T Consensus 100 -~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~~LSgGqkqrvaiA~aL~~~p~ill 167 (288)
T PRK13643 100 -ETVLKDVAFGPQNFG---IPKEKAEKIAAEKLEMVGLADEFWEKS--------PFELSGGQMRRVAIAGILAMEPEVLV 167 (288)
T ss_pred -chHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCChhhccCC--------cccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 699999998764332 12233445678999999996 466777 55699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCC
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPC 229 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~ 229 (290)
|||||+|||+.++..+.++|+++++ .|.|||++||++ .++..+||+|++|++|++++.|++++++. ++...++.+
T Consensus 168 LDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 245 (288)
T PRK13643 168 LDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGV 245 (288)
T ss_pred EECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCC
Confidence 9999999999999999999999954 589999999997 57889999999999999999999998764 455677776
Q ss_pred CCCCChHHHH
Q psy2520 230 PYGYNPADFL 239 (290)
Q Consensus 230 ~~~~~~~~~~ 239 (290)
|........+
T Consensus 246 p~~~~~~~~~ 255 (288)
T PRK13643 246 PKATHFADQL 255 (288)
T ss_pred ChHHHHHHHH
Confidence 6554444444
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=347.73 Aligned_cols=203 Identities=27% Similarity=0.424 Sum_probs=173.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++.+|++++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.++|+||++.+++.+|
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T cd03256 18 KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLS 94 (241)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCc
Confidence 4899999999999999999999999999999999884 7999999998753 24567999999999999999
Q ss_pred HHHHHHHHHHhcC-----chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 77 VYEHLYFMALLKL-----DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 77 v~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|.||+.+...... ..........+++.++++.+++.+..++. +.+|||||||||+|||||+.+|++|
T Consensus 95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 95 VLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR--------ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred HHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999987532110 00001112335577899999998877877 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
||||||+|||+.++..+.+.|++++++.|+|||++||++ .++..+||++++|++|++++.|+++++
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 999999999999999999999999655589999999997 478889999999999999999998865
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-48 Score=353.30 Aligned_cols=212 Identities=25% Similarity=0.370 Sum_probs=178.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCC--CCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHD--LFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~--~~~~ 73 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+||+||++ .++
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~- 99 (290)
T PRK13634 24 YDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF- 99 (290)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-
Confidence 5899999999999999999999999999999999984 8999999998742 2456799999986 445
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
..||+||+.|+...... ...+..+++.++++.++|. +..++. +..|||||||||+|||||+.+|++||
T Consensus 100 ~~tv~eni~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~~LSgGq~qrv~lAraL~~~P~lll 168 (290)
T PRK13634 100 EETVEKDICFGPMNFGV---SEEDAKQKAREMIELVGLPEELLARS--------PFELSGGQMRRVAIAGVLAMEPEVLV 168 (290)
T ss_pred hhhHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHCCCChhhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 46999999987543221 1222335678899999996 567777 55699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCC
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPC 229 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~ 229 (290)
|||||+|||+.++..++++|++++++.|.|||++||++ .++..+|||+++|++|++++.|++++++. .+...+...
T Consensus 169 lDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 247 (290)
T PRK13634 169 LDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLDL 247 (290)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCC
Confidence 99999999999999999999999655689999999997 57889999999999999999999988753 344455554
Q ss_pred CC
Q psy2520 230 PY 231 (290)
Q Consensus 230 ~~ 231 (290)
|.
T Consensus 248 ~~ 249 (290)
T PRK13634 248 PE 249 (290)
T ss_pred CH
Confidence 43
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=343.49 Aligned_cols=200 Identities=26% Similarity=0.411 Sum_probs=173.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. . .++.++|+||++.+++.+||+
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE 93 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence 4899999999999999999999999999999999984 8999999998743 1 245799999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.+....+.. ........+.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 94 ~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 162 (232)
T cd03218 94 ENILAVLEIRGL---SKKEREEKLEELLEEFHITHLRKSK--------ASSLSGGERRRVEIARALATNPKFLLLDEPFA 162 (232)
T ss_pred HHHHHHHHhcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 999986543321 1222334577899999998888887 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+.++|+++++ .|+|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 163 ~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 163 GVDPIAVQDIQKIIKILKD-RGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred cCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999954 589999999997 4789999999999999999999887653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=339.67 Aligned_cols=195 Identities=23% Similarity=0.377 Sum_probs=169.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.. ..++.++|++|++.+++.+||+||+
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 93 (213)
T cd03301 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI 93 (213)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHH
Confidence 5899999999999999999999999999999999984 8999999998753 2345799999999888899999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.++...... ...+..+++.++++.+++.+..++. +.+||||||||++|||||+.+|+++||||||+|||
T Consensus 94 ~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD 162 (213)
T cd03301 94 AFGLKLRKV---PKDEIDERVREVAELLQIEHLLDRK--------PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162 (213)
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHcCCHHHHhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 886543221 1223345678899999998888888 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
+.++..+++.|++++.+.|.|||++||++ .++..+||++++|++|++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 163 AKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999654589999999997 5788899999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-48 Score=356.84 Aligned_cols=200 Identities=28% Similarity=0.427 Sum_probs=177.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..++.+||+||++.+++.+||.||
T Consensus 19 ~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~ 95 (301)
T TIGR03522 19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREY 95 (301)
T ss_pred EEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHH
Confidence 4899999999999999999999999999999999994 8999999998754 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....+.. ...+..+++.++++.+||.+..+++ +..|||||||||+||+||+.+|++|||||||+||
T Consensus 96 l~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gL 164 (301)
T TIGR03522 96 LQFIAGIYGM---KGQLLKQRVEEMIELVGLRPEQHKK--------IGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGL 164 (301)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHCCCchHhcCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 9987655421 1222334578899999999888888 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+.++..+++.|+++ ++ ++|||++||++ .++.++|||+++|++|++++.|+++++..
T Consensus 165 D~~~~~~l~~~l~~~-~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 165 DPNQLVEIRNVIKNI-GK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CHHHHHHHHHHHHHh-cC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999 44 69999999997 57999999999999999999999998654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=360.50 Aligned_cols=203 Identities=21% Similarity=0.385 Sum_probs=176.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
.||||++++||+++|+|+||||||||+++|+|+++|+ +|+|+++|+++.. .+++.++||||++ .++|.
T Consensus 38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 114 (331)
T PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR 114 (331)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence 5899999999999999999999999999999999984 8999999999853 2457899999997 58889
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+||.+|+.+....... .....+..+++.++++.++|. +..++. +.+|||||||||+|||||+.+|++||+
T Consensus 115 ~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~--------p~~LSgG~~QRv~iArAL~~~P~llil 185 (331)
T PRK15079 115 MTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY--------PHEFSGGQCQRIGIARALILEPKLIIC 185 (331)
T ss_pred CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999986543211 112333445678899999994 466777 556999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||++||+.++.+++++|++++++.|.|+|++|||+ ..+..+||++++|++|++++.|++++++
T Consensus 186 DEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 186 DEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999655689999999997 5788899999999999999999998775
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=366.99 Aligned_cols=201 Identities=26% Similarity=0.397 Sum_probs=177.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c----ccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K----FRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~----~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. . .++.+||+||++.+++.+
T Consensus 45 ~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 5899999999999999999999999999999999994 8999999999753 1 135799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||.||+.|+...... ...+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~---~~~~~~~~~~e~L~~~gL~~~~~~~--------~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGI---NAEERREKALDALRQVGLENYAHSY--------PDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCChhhhcC--------cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999987654321 1223345678899999999888888 55699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||++||+.++..+.+.|++++++.|+|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999999655689999999997 5788999999999999999999988764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-48 Score=349.80 Aligned_cols=201 Identities=26% Similarity=0.393 Sum_probs=174.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c----ccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K----FRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~----~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. . .++.++|+||++.+++.+
T Consensus 41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 117 (269)
T cd03294 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR 117 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence 5899999999999999999999999999999999984 7999999998753 1 135799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||.||+.+....... ......+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||
T Consensus 118 tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~Gq~qrv~lAral~~~p~illLDE 186 (269)
T cd03294 118 TVLENVAFGLEVQGV---PRAEREERAAEALELVGLEGWEHKY--------PDELSGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred cHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCHhHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999987543221 1122335578899999998888888 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+|||+.++..+.++|++++++.|.|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 187 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 187 AFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999655589999999997 4788999999999999999999988664
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-48 Score=340.03 Aligned_cols=198 Identities=32% Similarity=0.475 Sum_probs=172.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++|++.+++.+||.||
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 95 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREH 95 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHH
Confidence 5899999999999999999999999999999999984 8999999998753 356679999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....... ......+.+.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+||
T Consensus 96 l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 96 LRFYARLKGL---PKSEIKEEVELLLRVLGLTDKANKR--------ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHHhCh--------hhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 9986544321 1122234578899999998888887 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|+.++..+.+.|++++ + +.|||++||++ ..+..+||++++|++|+++..|+++++
T Consensus 165 D~~~~~~l~~~l~~~~-~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 165 DPASRRAIWDLILEVR-K-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CHHHHHHHHHHHHHHh-c-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999984 4 58999999997 478889999999999999999988753
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-48 Score=356.74 Aligned_cols=213 Identities=23% Similarity=0.336 Sum_probs=178.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC----------------------------
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE---------------------------- 55 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~---------------------------- 55 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|++..
T Consensus 24 ~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 24 DNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccccchH
Confidence 4799999999999999999999999999999999994 799999987641
Q ss_pred ccccccEEEEccCC-CCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChH
Q psy2520 56 GKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGG 133 (290)
Q Consensus 56 ~~~~~~ig~v~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgG 133 (290)
..+++.||||||++ ..+...||+||+.|+...... ......+++.++++.+||. +..++. +..||||
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~~LSgG 169 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGV---SKEEAKKRAAKYIELVGLDESYLQRS--------PFELSGG 169 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCC---CHHHHHHHHHHHHHHcCCChhhhhCC--------hhhCCHH
Confidence 12466799999985 334457999999987654321 2233345678999999996 677887 5569999
Q ss_pred HHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 134 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 134 qrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|||||+||++|+.+|++|||||||+|||+.++..++++|++++ +.|.|||++||++ .++.++|||+++|++|++++.|
T Consensus 170 qkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivtHd~-~~~~~~adrv~vl~~G~i~~~g 247 (305)
T PRK13651 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKTIILVTHDL-DNVLEWTKRTIFFKDGKIIKDG 247 (305)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeeCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999995 5599999999997 5788999999999999999999
Q ss_pred CHHHHHH---HHHHCCCCCCCC
Q psy2520 214 SKDAALA---FLESQGYPCPYG 232 (290)
Q Consensus 214 ~~~~~~~---~~~~~g~~~~~~ 232 (290)
++++++. .+...+...|..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~p~~ 269 (305)
T PRK13651 248 DTYDILSDNKFLIENNMEPPKL 269 (305)
T ss_pred CHHHHhcCHHHHHHCCCCCChH
Confidence 9998763 344556554433
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=340.58 Aligned_cols=194 Identities=30% Similarity=0.403 Sum_probs=169.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+||+||
T Consensus 22 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 5789999999999999999999999999999999984 8999999998753 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....+.. ........+.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+||
T Consensus 99 l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~illlDEPt~~L 167 (218)
T cd03266 99 LEYFAGLYGL---KGDELTARLEELADRLGMEELLDRR--------VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL 167 (218)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHHhhh--------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCC
Confidence 9886543321 1223345678899999998888887 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+.++..+.+.|++++ ++|.|||++||++ .++..+||++++|++|+++..|
T Consensus 168 D~~~~~~l~~~l~~~~-~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 168 DVMATRALREFIRQLR-ALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CHHHHHHHHHHHHHHH-HCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999994 4589999999997 5788999999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=346.85 Aligned_cols=203 Identities=28% Similarity=0.387 Sum_probs=172.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++.+|++++|+|||||||||||++|+|+++|. +|+|.++|.++.. .+++.++|+||++.+++.+|
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (243)
T TIGR02315 19 KNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLT 95 (243)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccccc
Confidence 4899999999999999999999999999999999984 8999999998742 14567999999998999999
Q ss_pred HHHHHHHHHHhcC-----chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 77 VYEHLYFMALLKL-----DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 77 v~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|.||+.++..... ..........+++.++++.+++.+..++. +..|||||||||+|||||+.+|++|
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~ll 167 (243)
T TIGR02315 96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR--------ADQLSGGQQQRVAIARALAQQPDLI 167 (243)
T ss_pred HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999987532100 00001122335678899999998877877 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
||||||+|||+.++..+.+.|++++++.|+|||++||++ .++.++||++++|++|+++..|+++++
T Consensus 168 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 168 LADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999998555589999999997 478889999999999999999988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=338.93 Aligned_cols=194 Identities=28% Similarity=0.473 Sum_probs=169.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....++.++|++|++.+++.+||.||+.+
T Consensus 17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 93 (210)
T cd03269 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVY 93 (210)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHH
Confidence 4799999999999999999999999999999999984 8999999998755456789999999999999999999988
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....+.. ......+.+.++++.+++.+..++. +.+||||||||++||+||+.+|+++||||||+|||+.
T Consensus 94 ~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~ 162 (210)
T cd03269 94 LAQLKGL---KKEEARRRIDEWLERLELSEYANKR--------VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPV 162 (210)
T ss_pred HHHHcCC---ChHHHHHHHHHHHHHcCChHHHhCc--------HhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 6543321 1222345678899999998877877 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
++..+.+.|+++++ +|.|||++||++ .++.++||++++|++|++++.|
T Consensus 163 ~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 163 NVELLKDVIRELAR-AGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999854 589999999997 4788899999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-48 Score=343.95 Aligned_cols=200 Identities=25% Similarity=0.402 Sum_probs=174.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+||+|
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (242)
T cd03295 18 NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE 94 (242)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHH
Confidence 4799999999999999999999999999999999984 7999999998753 24568999999999999999999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC--ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN--SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.++...... ......+.+.++++.+++.+ ..++. +.+|||||||||+|||||+.+|++|||||||
T Consensus 95 ~l~~~~~~~~~---~~~~~~~~~~~~l~~l~l~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 95 NIALVPKLLKW---PKEKIRERADELLALVGLDPAEFADRY--------PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHcCCCcHHHHhcC--------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 99886543221 12223455788999999985 66777 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
+|||+.++..+.+.|++++++.|+|||++||++ .++..+||++++|++|+++..|+++++
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999554589999999997 478899999999999999999988765
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=351.13 Aligned_cols=211 Identities=22% Similarity=0.364 Sum_probs=177.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCC--CCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHD--LFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~--~~~~ 73 (290)
.||||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.|||+||++ .+++
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (286)
T PRK13646 24 HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE 100 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence 5899999999999999999999999999999999994 7999999998742 2567899999985 4555
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
.||.||+.|+...... ...+..+++.++++.+||. +..++. +..|||||||||+|||||+.+|++||
T Consensus 101 -~tv~e~i~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~~LSgGq~qrv~laraL~~~p~ill 168 (286)
T PRK13646 101 -DTVEREIIFGPKNFKM---NLDEVKNYAHRLLMDLGFSRDVMSQS--------PFQMSGGQMRKIAIVSILAMNPDIIV 168 (286)
T ss_pred -hhHHHHHHhhHHHcCC---CHHHHHHHHHHHHHHcCCChhhhhCC--------cccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 5999999987543221 2223345678899999996 567777 55699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCC
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPC 229 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~ 229 (290)
|||||+|||+.++..+.++|++++.+.|+|||++||++ .++..+||++++|++|+++..|++++++. .+...++..
T Consensus 169 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 247 (286)
T PRK13646 169 LDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGL 247 (286)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhCHHHHHHcCCCC
Confidence 99999999999999999999999555689999999997 47888999999999999999999988654 233445443
Q ss_pred C
Q psy2520 230 P 230 (290)
Q Consensus 230 ~ 230 (290)
|
T Consensus 248 ~ 248 (286)
T PRK13646 248 P 248 (286)
T ss_pred C
Confidence 3
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-48 Score=348.72 Aligned_cols=202 Identities=24% Similarity=0.399 Sum_probs=174.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+|
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 100 (269)
T PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMN 100 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCC
Confidence 4799999999999999999999999999999999984 8999999998752 13567999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|.||+.+....... .........+.++++.+++.+..++. +..|||||||||+|||||+.+|++||||||
T Consensus 101 v~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LSgGq~qrv~laral~~~p~lllLDEP 170 (269)
T PRK11831 101 VFDNVAYPLREHTQ--LPAPLLHSTVMMKLEAVGLRGAAKLM--------PSELSGGMARRAALARAIALEPDLIMFDEP 170 (269)
T ss_pred HHHHHHHHHHHccC--CCHHHHHHHHHHHHHHcCChhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999886432211 11222334567889999998888887 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..++++|++++++.|.|||++||++ .++.++||++++|++|++++.|++++++
T Consensus 171 t~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 171 FVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999555589999999997 5788999999999999999999988654
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=339.97 Aligned_cols=190 Identities=32% Similarity=0.466 Sum_probs=164.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc--------ccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK--------FRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~--------~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... .++.++|++|++.+++.+
T Consensus 21 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (218)
T cd03255 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL 97 (218)
T ss_pred eeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCC
Confidence 4799999999999999999999999999999999984 89999999987531 246799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||+||+.+....+.. ......+.+.++++.+||.+..++. +.+|||||||||+|||||+.+|++|||||
T Consensus 98 tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 98 TALENVELPLLLAGV---PKKERRERAEELLERVGLGDRLNHY--------PSELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred cHHHHHHHHHhhcCC---CHHHHHHHHHHHHHHcCCchhhhcC--------hhhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 999999987544321 1122334578899999998888887 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
||+|||+.++..+.++|++++++.|+|||++||++. ++. +||++++|++|++
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 999999999999999999995545899999999974 565 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=339.53 Aligned_cols=198 Identities=29% Similarity=0.468 Sum_probs=170.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. . .++.++|+||++.+++.+|++
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (222)
T cd03224 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE 93 (222)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence 4899999999999999999999999999999999984 8999999998753 1 246799999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHc-CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIEL-GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
||+.++..... . ......+.++++.+ ++.+..++. +..||||||||++|||||+.+|++|||||||
T Consensus 94 ~~l~~~~~~~~--~---~~~~~~~~~~l~~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 94 ENLLLGAYARR--R---AKRKARLERVYELFPRLKERRKQL--------AGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred HHHHHHhhhcC--c---hhHHHHHHHHHHHHHhhhhhhhCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99998754321 1 11223456677777 477677777 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+++.|+++++ .|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999954 689999999997 5788999999999999999999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-48 Score=344.14 Aligned_cols=201 Identities=28% Similarity=0.430 Sum_probs=173.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------------cccccEEEEccCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------------KFRSACGFMYQHDLF 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------------~~~~~ig~v~Q~~~~ 71 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (250)
T PRK11264 20 HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL 96 (250)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence 5899999999999999999999999999999999884 7999999998742 235679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
++.+||.||+.++...... .......+.+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|
T Consensus 97 ~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~Gq~qrv~la~al~~~p~ll 166 (250)
T PRK11264 97 FPHRTVLENIIEGPVIVKG--EPKEEATARARELLAKVGLAGKETSY--------PRRLSGGQQQRVAIARALAMRPEVI 166 (250)
T ss_pred CCCCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhCC--------hhhCChHHHHHHHHHHHHhcCCCEE
Confidence 9999999999875432111 11223345577899999998877777 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ +.|.|||++||++ .++.++||++++|++|++++.|++++++
T Consensus 167 lLDEPt~~LD~~~~~~l~~~l~~~~-~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 167 LFDEPTSALDPELVGEVLNTIRQLA-QEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999995 4589999999997 5788899999999999999999988653
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-48 Score=337.27 Aligned_cols=194 Identities=28% Similarity=0.412 Sum_probs=168.0
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
|+||++.+||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 899999999999999999999999999999999984 8999999998754 23567999999999999999999998
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+....... .. ....+++.++++.+++.+..++. +.+||||||||++|||||+.+|++|||||||+|||+
T Consensus 93 ~~~~~~~~--~~-~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~ 161 (211)
T cd03298 93 LGLSPGLK--LT-AEDRQAIEVALARVGLAGLEKRL--------PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161 (211)
T ss_pred cccccccC--cc-HHHHHHHHHHHHHcCCHHHHhCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 75432111 11 12234578899999998888887 456999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
.++..+++.|++++++.|.|||++||++ .++..+||++++|++|+++..|
T Consensus 162 ~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 162 ALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999555589999999997 5788899999999999987653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=348.46 Aligned_cols=211 Identities=26% Similarity=0.360 Sum_probs=176.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC-CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL-FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~-~~~~lTv~ 78 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.+||+||++. .++..||+
T Consensus 22 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 98 (274)
T PRK13647 22 KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVW 98 (274)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHH
Confidence 4899999999999999999999999999999999984 8999999998853 24567999999862 45568999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.|+..... .......+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+
T Consensus 99 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~--------~~~LSgG~~qrv~laraL~~~p~llllDEPt~ 167 (274)
T PRK13647 99 DDVAFGPVNMG---LDKDEVERRVEEALKAVRMWDFRDKP--------PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167 (274)
T ss_pred HHHHhhHHHcC---CCHHHHHHHHHHHHHHCCCHHHhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 99998654321 12223335578899999998888888 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH--HHHHHCCCCCC
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL--AFLESQGYPCP 230 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~--~~~~~~g~~~~ 230 (290)
|||+.++..++++|++++. .|.|||++||++ .++.++||++++|++|++++.|+++++. ..+...++..|
T Consensus 168 ~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 168 YLDPRGQETLMEILDRLHN-QGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHhcCHHHHHHcCCCCC
Confidence 9999999999999999954 489999999997 4778899999999999999999986532 13334454443
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-48 Score=361.20 Aligned_cols=198 Identities=25% Similarity=0.391 Sum_probs=175.3
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~lT 76 (290)
|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.++|+||++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 799999999999999999999999999999999984 8999999998742 23567999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.|+..... .....+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++||||||
T Consensus 92 v~enl~~~~~~~~-----~~~~~~~~~~~l~~~gL~~~~~~~--------~~~LSgGqkqRvalAraL~~~p~lllLDEP 158 (354)
T TIGR02142 92 VRGNLRYGMKRAR-----PSERRISFERVIELLGIGHLLGRL--------PGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158 (354)
T ss_pred HHHHHHHHhhccC-----hhHHHHHHHHHHHHcCChhHhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 9999998754221 122234578899999999888888 556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+++.|++++++.|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 159 ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 159 LAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999999999655589999999997 5788999999999999999999998765
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=362.51 Aligned_cols=201 Identities=25% Similarity=0.368 Sum_probs=177.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCE----ecCc-------cc-cccEEEEccCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK----PVEG-------KF-RSACGFMYQHDLF 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~----~~~~-------~~-~~~ig~v~Q~~~~ 71 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+ ++.. .+ ++.++|+||++.+
T Consensus 41 ~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 41 ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5899999999999999999999999999999999994 899999997 3321 12 2579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
++.+||.||+.|+..... ....+...++.++++.+||.++.++. +.+|||||||||+|||||+.+|++|
T Consensus 118 ~p~~Tv~eNi~~~~~~~g---~~~~~~~~~a~e~le~vgL~~~~~~~--------~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQG---MPEAERRKRVDEQLELVGLAQWADKK--------PGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999865432 12234455678999999999888888 4559999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||++||+.++..+.+.|.+++++.|+|||++|||+ +++.++||++++|++|+++..|++++++
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999655689999999997 5788999999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=342.05 Aligned_cols=201 Identities=27% Similarity=0.419 Sum_probs=173.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~lTv 77 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++.. .+++.++|++|++.+++.+||
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (240)
T PRK09493 18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA 94 (240)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcH
Confidence 4899999999999999999999999999999999984 8999999998753 245679999999989999999
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
+||+.+....... .......+.+.++++.+|+.+..++. +..||||||||++|||||+.+|+++||||||
T Consensus 95 ~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEP~ 164 (240)
T PRK09493 95 LENVMFGPLRVRG--ASKEEAEKQARELLAKVGLAERAHHY--------PSELSGGQQQRVAIARALAVKPKLMLFDEPT 164 (240)
T ss_pred HHHHHhHHHHhcC--CCHHHHHHHHHHHHHHcCChHHHhcC--------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 9999876421111 11222345578899999998877887 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+.++|++++ ++|+|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 165 ~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 165 SALDPELRHEVLKVMQDLA-EEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred ccCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999995 4589999999997 5788899999999999999999988654
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-48 Score=341.20 Aligned_cols=199 Identities=25% Similarity=0.408 Sum_probs=168.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC-----CCCCCCccEEEECCEecCc------cccccEEEEccCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL-----PDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~-----~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~ 72 (290)
.|+||++++||+++|+||||||||||+++|+|++ +| .+|+|.++|+++.. .+++.++|+||++.++
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 93 (227)
T cd03260 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF 93 (227)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence 4899999999999999999999999999999999 77 48999999998742 2456899999998888
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
.+||+||+.+........ ......+++.++++.+++.+..++.+. +.+|||||||||+|||||+.+|++||
T Consensus 94 -~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~~LSgG~~qrv~la~al~~~p~lll 164 (227)
T cd03260 94 -PGSIYDNVAYGLRLHGIK--LKEELDERVEEALRKAALWDEVKDRLH------ALGLSGGQQQRLCLARALANEPEVLL 164 (227)
T ss_pred -cccHHHHHHhHHHhcCCC--cHHHHHHHHHHHHHHcCCChHHhccCC------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 789999998865433211 111223557789999999877666520 14599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
|||||+|||+.++..+++.|++++ ++ .|||++||++ .++..+||++++|++|++++.|++++
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~-~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 165 LDEPTSALDPISTAKIEELIAELK-KE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-hC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999994 44 8999999997 47888999999999999999988764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-48 Score=366.32 Aligned_cols=203 Identities=27% Similarity=0.348 Sum_probs=176.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||||+|+|+++|. +|+|+++|+++.. .+++.+||++|++.+++.+||+|
T Consensus 20 ~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e 96 (402)
T PRK09536 20 DGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQ 96 (402)
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHH
Confidence 4899999999999999999999999999999999994 8999999998754 35678999999999989999999
Q ss_pred HHHHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.++...+... ........+++.++++.+++.+..++. +.+|||||||||+|||||+++|++|||||||+
T Consensus 97 ~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~--------~~~LSgGerQRv~IArAL~~~P~iLLLDEPts 168 (402)
T PRK09536 97 VVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP--------VTSLSGGERQRVLLARALAQATPVLLLDEPTA 168 (402)
T ss_pred HHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 999864321100 000122345678999999999988888 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++.+++++|+++++ .|.|||++||++ .++.++|||+++|++|+++..|++++++
T Consensus 169 gLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 169 SLDINHQVRTLELVRRLVD-DGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred cCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999954 589999999997 5788999999999999999999999864
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=360.32 Aligned_cols=195 Identities=26% Similarity=0.410 Sum_probs=174.4
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~lT 76 (290)
|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. ..++.++|+||++.+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 799999999999999999999999999999999984 8999999998742 23578999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.|+... ...+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++||||||
T Consensus 93 v~enl~~~~~~---------~~~~~~~~~l~~~gl~~~~~~~--------~~~LSgGq~qRvalaraL~~~p~llLLDEP 155 (352)
T PRK11144 93 VRGNLRYGMAK---------SMVAQFDKIVALLGIEPLLDRY--------PGSLSGGEKQRVAIGRALLTAPELLLMDEP 155 (352)
T ss_pred HHHHHHhhhhh---------hhHHHHHHHHHHcCCchhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 99999886421 1124577899999999888888 556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|++||+.++..+++.|++++++.|.|+|++||++ .++..+||++++|++|+++..|+++++..
T Consensus 156 ts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 156 LASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999999999655589999999997 57899999999999999999999998753
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=354.70 Aligned_cols=212 Identities=22% Similarity=0.356 Sum_probs=178.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------------------cccccEE
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------------------KFRSACG 63 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------------------~~~~~ig 63 (290)
.||||++++||+++|+||||||||||+++|+|+++|. +|+|+++|.++.. .+++.+|
T Consensus 43 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 119 (320)
T PRK13631 43 NNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS 119 (320)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHHhcEE
Confidence 4899999999999999999999999999999999994 8999999987632 2467899
Q ss_pred EEccCC--CCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHH
Q psy2520 64 FMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSF 140 (290)
Q Consensus 64 ~v~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~i 140 (290)
||||++ .+++ .||+||+.|+..... ....+..+++.++++.++|. +..++. +.+|||||||||+|
T Consensus 120 ~v~Q~~~~~l~~-~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~~LSgGqkqRvai 187 (320)
T PRK13631 120 MVFQFPEYQLFK-DTIEKDIMFGPVALG---VKKSEAKKLAKFYLNKMGLDDSYLERS--------PFGLSGGQKRRVAI 187 (320)
T ss_pred EEEECchhcccc-chHHHHHHhhHHhcC---CCHHHHHHHHHHHHHHcCCChhHhcCC--------cccCCHHHHHHHHH
Confidence 999986 4555 599999988754321 12223345678899999996 567777 55699999999999
Q ss_pred HHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 141 ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 141 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||+.+|++|||||||+|||+.++..++++|++++ ++|.|||++||++ +++..+||++++|++|+++..|++++++.
T Consensus 188 AraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~-~~g~TiiivtHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK-ANNKTVFVITHTM-EHVLEVADEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999984 4589999999997 46888999999999999999999998753
Q ss_pred ---HHHHCCCCCCCC
Q psy2520 221 ---FLESQGYPCPYG 232 (290)
Q Consensus 221 ---~~~~~g~~~~~~ 232 (290)
.+...++..|..
T Consensus 266 ~~~~~~~~~~~~p~~ 280 (320)
T PRK13631 266 DQHIINSTSIQVPRV 280 (320)
T ss_pred CHHHHHHcCCCCChH
Confidence 445566665543
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-48 Score=335.17 Aligned_cols=187 Identities=29% Similarity=0.443 Sum_probs=162.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCC-CCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDL-FSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~-~~~~lTv~e~l 81 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.++|+||++. .+..+||.||+
T Consensus 17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l 93 (205)
T cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREEL 93 (205)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHH
Confidence 4799999999999999999999999999999999984 8999999998753 34567999999964 34467999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.++..... . ...++.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+|||
T Consensus 94 ~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 94 LLGLKELD----A---GNEQAETVLKDLDLYALKERH--------PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred hhhhhhcC----c---cHHHHHHHHHHcCCchhcCCC--------chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 88653221 1 113467899999999888888 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 210 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~ 210 (290)
+.++..+.+.|+++++ .|.|||++||++ .++..+||++++|++|+++
T Consensus 159 ~~~~~~l~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAA-QGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 9999999999999954 589999999997 4788899999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=339.13 Aligned_cols=200 Identities=30% Similarity=0.438 Sum_probs=172.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.++||++.+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..++.++|++|++.+++.+|++||
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 94 (236)
T TIGR03864 18 DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQN 94 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHH
Confidence 4799999999999999999999999999999999984 8999999998753 233579999999988889999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....+.. ......+.+.++++.+|+.+..++. +..||||||||++|||||+.+|+++||||||+||
T Consensus 95 l~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrl~laral~~~p~llllDEP~~~L 163 (236)
T TIGR03864 95 LRYHAALHGL---SRAEARERIAALLARLGLAERADDK--------VRELNGGHRRRVEIARALLHRPALLLLDEPTVGL 163 (236)
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHcCChhhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 9876543311 1222334577899999998888887 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+.++..+.+.|+++++++|.|||++||++. ++. .||++++|++|+++..|+++++.
T Consensus 164 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 164 DPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999995445899999999974 565 59999999999999999988654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-48 Score=333.49 Aligned_cols=200 Identities=26% Similarity=0.401 Sum_probs=173.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
++|||++++||+++|+|||||||||||++|+|+.++. +|+|.++|++++. ..+..++||||...+|+.|||+
T Consensus 20 ~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVe 96 (237)
T COG0410 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVE 96 (237)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHH
Confidence 5899999999999999999999999999999999984 7999999999975 2577899999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELG-LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|||..++...... ......++++.+.|- |.+..+++ ...|||||||.++|||||+.+|++|+|||||
T Consensus 97 ENL~~g~~~~~~~----~~~~~~~e~v~~lFP~Lker~~~~--------aG~LSGGEQQMLAiaRALm~~PklLLLDEPs 164 (237)
T COG0410 97 ENLLLGAYARRDK----EAQERDLEEVYELFPRLKERRNQR--------AGTLSGGEQQMLAIARALMSRPKLLLLDEPS 164 (237)
T ss_pred HHHhhhhhccccc----ccccccHHHHHHHChhHHHHhcCc--------ccCCChHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999886543221 111112556666664 55667777 5569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.||-|.-..+|++.+++++++.|.||++|.++. ..+.+++||.++|.+|+++++|+++++.
T Consensus 165 ~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 165 EGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred cCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 999999999999999999666689999999997 5789999999999999999999999775
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-48 Score=335.49 Aligned_cols=190 Identities=29% Similarity=0.393 Sum_probs=166.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. .+++.++|+||++.+++.+||.||+
T Consensus 17 ~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 93 (208)
T cd03268 17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL 93 (208)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHH
Confidence 4799999999999999999999999999999999984 8999999988753 3456799999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.++...... ..+++.++++.+++.+..++. +..|||||||||+|||||+.+|++|||||||+|||
T Consensus 94 ~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 158 (208)
T cd03268 94 RLLARLLGI-------RKKRIDEVLDVVGLKDSAKKK--------VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158 (208)
T ss_pred HHHHHhcCC-------cHHHHHHHHHHcCCHHHHhhh--------HhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 886543211 123467889999998888887 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
+.++..+.++|+++++ .|.|||++||++ .++..+||++++|++|++++.|
T Consensus 159 ~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 159 PDGIKELRELILSLRD-QGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999854 689999999997 4788899999999999998754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=339.47 Aligned_cols=199 Identities=26% Similarity=0.387 Sum_probs=169.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... ....+|++|++.+++.+||.||+.+
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHH
Confidence 4899999999999999999999999999999999984 89999999987542 2235899999999999999999988
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....... ........+.+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR--------PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 6421111 112223344578899999998888887 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
++..+.+.|++++++.|+|||++||++ .++.++||++++|++|+++..|+..
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCce
Confidence 999999999998655589999999997 4788999999999999999888654
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=335.39 Aligned_cols=189 Identities=29% Similarity=0.468 Sum_probs=164.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.++|++|++.+++.+|
T Consensus 19 ~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (214)
T TIGR02673 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRT 95 (214)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCc
Confidence 4799999999999999999999999999999999884 8999999998753 24568999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|.||+.+....... ......+.+.++++.+++.+..++. +.+|||||||||+|||||+.+|++||||||
T Consensus 96 v~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~lllLDEP 164 (214)
T TIGR02673 96 VYENVALPLEVRGK---KEREIQRRVGAALRQVGLEHKADAF--------PEQLSGGEQQRVAIARAIVNSPPLLLADEP 164 (214)
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------hhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 99999987543221 1122335678899999998877777 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
|+|||+.++..+.+.|++++ +.|+|||++||++ .++..+||++++|++|+
T Consensus 165 t~~LD~~~~~~l~~~l~~~~-~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 165 TGNLDPDLSERILDLLKRLN-KRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred cccCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 99999999999999999984 4589999999997 57888999999999885
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=336.78 Aligned_cols=202 Identities=22% Similarity=0.415 Sum_probs=188.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||.+++|++++++|||||||||.+++|.|++.|+ +|+|.++|.+++...+.+|||+|.+..+|+.+||.|.+.|
T Consensus 19 ~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~y 95 (300)
T COG4152 19 DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKY 95 (300)
T ss_pred cceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHH
Confidence 5899999999999999999999999999999999994 8999999999988888899999999999999999999999
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
.+.++.. +..+..+.+..||+++++.....++ +.+||.|++|++.+..+++++|+++|||||+|||||.
T Consensus 96 la~LkGm---~~~e~~~~~~~wLer~~i~~~~~~k--------Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPV 164 (300)
T COG4152 96 LAELKGM---PKAEIQKKLQAWLERLEIVGKKTKK--------IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPV 164 (300)
T ss_pred HHHhcCC---cHHHHHHHHHHHHHhccccccccch--------HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChh
Confidence 9998764 4455667789999999999998888 5559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 221 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 221 (290)
+.+.+.+.+.++ ++.|.|||++||.+ +.+.++||++++|++|+.|.+|+.+++.+.
T Consensus 165 N~elLk~~I~~l-k~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 165 NVELLKDAIFEL-KEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred hHHHHHHHHHHH-HhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999999 66799999999997 579999999999999999999999988653
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=337.52 Aligned_cols=195 Identities=29% Similarity=0.437 Sum_probs=167.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc-------c-cccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-------F-RSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~-------~-~~~ig~v~Q~~~~~~~l 75 (290)
.++||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++... + ++.++|+||++.+++.+
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (233)
T PRK11629 26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF 102 (233)
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCC
Confidence 4799999999999999999999999999999999984 89999999987531 2 25799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||+||+.+....... ......+++.++++.+|+.+..++. +.+||||||||++|||||+.+|++|||||
T Consensus 103 tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LSgG~~qrl~la~al~~~p~lllLDE 171 (233)
T PRK11629 103 TALENVAMPLLIGKK---KPAEINSRALEMLAAVGLEHRANHR--------PSELSGGERQRVAIARALVNNPRLVLADE 171 (233)
T ss_pred CHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999986543211 1222335678899999998888877 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
||+|||+.++..+.+.|++++++.|.|||++||++ .++.. +|++++|++|+++..++
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 172 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELS 228 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEec
Confidence 99999999999999999998544589999999997 45554 57999999999998775
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=334.70 Aligned_cols=190 Identities=26% Similarity=0.408 Sum_probs=165.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++|++.+++.+|
T Consensus 18 ~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (214)
T cd03292 18 DGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRN 94 (214)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCc
Confidence 4899999999999999999999999999999999984 8999999998743 24567999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+.||+.++...... ......+++.++++.+++.+..++. +.+||||||||++|||||+.+|+++|||||
T Consensus 95 ~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 95 VYENVAFALEVTGV---PPREIRKRVPAALELVGLSHKHRAL--------PAELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHhhCC--------hhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99999987543321 1222335678899999998877777 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
|+|||+.++..+.+.|++++ ++|.|||++||++ .++..+||++++|++|++
T Consensus 164 t~~LD~~~~~~~~~~l~~~~-~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKIN-KAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999984 4589999999997 578889999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=344.60 Aligned_cols=201 Identities=24% Similarity=0.342 Sum_probs=173.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCC-CCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHD-LFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~-~~~~~lTv~ 78 (290)
.|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.+||+||++ .+++..||.
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 100 (279)
T PRK13635 24 KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQ 100 (279)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHH
Confidence 4899999999999999999999999999999999994 8999999999853 2456799999997 467778999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.++...... ...+..+++.++++.+||.+..++. +..|||||||||+|||||+.+|++|||||||+
T Consensus 101 enl~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 169 (279)
T PRK13635 101 DDVAFGLENIGV---PREEMVERVDQALRQVGMEDFLNRE--------PHRLSGGQKQRVAIAGVLALQPDIIILDEATS 169 (279)
T ss_pred HHHhhhHhhCCC---CHHHHHHHHHHHHHHcCChhhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 999987543321 2223345678899999999888888 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||+.++..+++.|++++++.|.|||++||++. ++. .||++++|++|++++.|+++++..
T Consensus 170 gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 170 MLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999996555899999999974 565 699999999999999999987653
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=353.46 Aligned_cols=202 Identities=22% Similarity=0.345 Sum_probs=175.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
.||||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|+++.. .+++.++||||++ .+.+.
T Consensus 32 ~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 108 (327)
T PRK11308 32 DGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR 108 (327)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence 4899999999999999999999999999999999984 8999999999753 2466899999997 58899
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+||.+++.+....... ....+..+++.++++.+||. ..+++. +.+|||||||||+|||||+.+|++||+
T Consensus 109 ~~v~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gL~~~~~~~~--------p~~LSgGq~QRv~iArAL~~~P~lLil 178 (327)
T PRK11308 109 KKVGQILEEPLLINTS--LSAAERREKALAMMAKVGLRPEHYDRY--------PHMFSGGQRQRIAIARALMLDPDVVVA 178 (327)
T ss_pred cCHHHHHHHHHHHccC--CCHHHHHHHHHHHHHHCCCChHHhcCC--------CccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999876543311 12233456688999999996 356777 556999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||++||+.++.+++++|++++++.|.|||+||||+ ..+..+||++++|++|++++.|++++++
T Consensus 179 DEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 179 DEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999665699999999997 4778899999999999999999998775
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=337.77 Aligned_cols=200 Identities=26% Similarity=0.396 Sum_probs=173.4
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
|+||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. ..++.++|+||++.+++.+|+.||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999984 7999999998753 23467999999999999999999998
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+...... ... .....++.++++.+++.+..++. +..||||||||++|||||+.+|+++||||||+|||+
T Consensus 94 ~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~ 162 (232)
T PRK10771 94 LGLNPGL--KLN-AAQREKLHAIARQMGIEDLLARL--------PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDP 162 (232)
T ss_pred ccccccc--CCC-HHHHHHHHHHHHHcCcHHHHhCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 7532111 011 12234578899999998888888 556999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.++..+.++|++++++.|.|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 163 ~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 163 ALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999998555589999999997 4788899999999999999999988664
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-47 Score=339.39 Aligned_cols=202 Identities=24% Similarity=0.403 Sum_probs=171.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. ...+|+|+++|+++.. .+++.++|+||++.+++ +
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 96 (247)
T TIGR00972 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-M 96 (247)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-C
Confidence 5899999999999999999999999999999999872 0117999999998752 24578999999988888 9
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|++||+.+....+.. .......+.+.++++.+++. +..++. +.+|||||||||+|||||+.+|+++
T Consensus 97 tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgG~~qrv~laral~~~p~ll 166 (247)
T TIGR00972 97 SIYDNIAYGPRLHGI--KDKKELDEIVEESLKKAALWDEVKDRLHDS--------ALGLSGGQQQRLCIARALAVEPEVL 166 (247)
T ss_pred CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCCcchhhHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999986543321 11223335578899999997 566666 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..++++|++++ + +.|||++||++ .++..+||++++|++|+++..|++++++
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 167 LLDEPTSALDPIATGKIEELIQELK-K-KYTIVIVTHNM-QQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHH-h-cCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999994 4 48999999997 4788999999999999999999988653
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=347.48 Aligned_cols=199 Identities=22% Similarity=0.338 Sum_probs=171.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCC--CCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHD--LFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~--~~~~ 73 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. ..++.+||+||++ .++
T Consensus 24 ~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~- 99 (287)
T PRK13641 24 DNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF- 99 (287)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-
Confidence 5899999999999999999999999999999999994 8999999998742 2356799999986 344
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
.+||.||+.|+...... ......+++.++++.++|. +..+++ +..|||||||||+|||||+.+|++||
T Consensus 100 ~~tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~~LSgGq~qrl~laral~~~p~lLl 168 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGF---SEDEAKEKALKWLKKVGLSEDLISKS--------PFELSGGQMRRVAIAGVMAYEPEILC 168 (287)
T ss_pred cchHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCChhHhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 57999999886543221 1223345678899999997 577887 45599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..+.++|++++ +.|.|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 169 LDEPt~gLD~~~~~~l~~~l~~l~-~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 169 LDEPAAGLDPEGRKEMMQLFKDYQ-KAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999994 4589999999997 5788999999999999999999998765
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=341.31 Aligned_cols=204 Identities=24% Similarity=0.368 Sum_probs=173.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. . .+..++|+||++.+++.+||.
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (255)
T PRK11300 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVI 98 (255)
T ss_pred EeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHH
Confidence 4899999999999999999999999999999999984 8999999998753 1 244699999999999999999
Q ss_pred HHHHHHHHhcCc----------h--hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 79 EHLYFMALLKLD----------R--RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 79 e~l~~~~~~~~~----------~--~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
||+.++...... . ..........+.++++.+|+.+..++. +.+|||||||||+||+||+.
T Consensus 99 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrv~la~al~~ 170 (255)
T PRK11300 99 ENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ--------AGNLAYGQQRRLEIARCMVT 170 (255)
T ss_pred HHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC--------hhhCCHHHHHHHHHHHHHhc
Confidence 999986431100 0 001112234577889999998888888 45599999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|++|||||||+|||+.++..+.+.|.+++++.|.|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 171 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 171 QPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 99999999999999999999999999999554589999999997 5788999999999999999999988654
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=342.23 Aligned_cols=202 Identities=27% Similarity=0.385 Sum_probs=174.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC-CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL-FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~-~~~~lTv~ 78 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++. .+...||.
T Consensus 21 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (277)
T PRK13652 21 NNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVE 97 (277)
T ss_pred eEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHH
Confidence 5899999999999999999999999999999999984 8999999998753 34567999999863 34467999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.+...... .......+.+.++++.++|.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 98 ~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~Gq~qrl~laraL~~~p~llilDEPt~ 166 (277)
T PRK13652 98 QDIAFGPINLG---LDEETVAHRVSSALHMLGLEELRDRV--------PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166 (277)
T ss_pred HHHHhHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99987654321 12223345678899999998888888 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||+.++..+.++|++++++.|.|||++||++ .++.++||++++|++|++++.|++++++.
T Consensus 167 gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999654589999999997 57889999999999999999999998753
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-47 Score=351.34 Aligned_cols=205 Identities=21% Similarity=0.315 Sum_probs=174.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC-CCccEEEECCEecCc----c----ccccEEEEccCC--CCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC-IIDGDIRVNGKPVEG----K----FRSACGFMYQHD--LFS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~-~~~G~I~i~G~~~~~----~----~~~~ig~v~Q~~--~~~ 72 (290)
.||||++++||+++|+|+||||||||+++|+|+++|.. .++|+|.++|+++.. . .++.|+||||++ .+.
T Consensus 24 ~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~ 103 (326)
T PRK11022 24 DRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLN 103 (326)
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcC
Confidence 48999999999999999999999999999999987421 258999999999753 1 124699999997 578
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC---ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
|.+||.+++......... ....+..+++.++++.+||.+ ..++. +.+|||||||||+|||||+.+|+
T Consensus 104 p~~~v~~~i~~~l~~~~~--~~~~~~~~~~~~~L~~~gL~~~~~~l~~~--------p~~LSgGq~QRv~iArAL~~~P~ 173 (326)
T PRK11022 104 PCYTVGFQIMEAIKVHQG--GNKKTRRQRAIDLLNQVGIPDPASRLDVY--------PHQLSGGMSQRVMIAMAIACRPK 173 (326)
T ss_pred CcCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHCCCCChHHHHhCC--------chhCCHHHHHHHHHHHHHHhCCC
Confidence 999999998776543211 122334566889999999964 34666 56699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+||+||||++||+.++.+++++|++++++.|.|+|++|||+ ..+..+||+|++|++|+++..|++++++
T Consensus 174 llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 174 LLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999665699999999997 4778899999999999999999998875
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-47 Score=351.90 Aligned_cols=205 Identities=24% Similarity=0.377 Sum_probs=174.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c---cc-ccEEEEccCC--CCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K---FR-SACGFMYQHD--LFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~---~~-~~ig~v~Q~~--~~~~ 73 (290)
.||||++++||+++|+|+||||||||+++|+|+++|...++|+|.++|+++.. . ++ +.|+||||++ .+.|
T Consensus 33 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p 112 (330)
T PRK09473 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNP 112 (330)
T ss_pred eeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCC
Confidence 58999999999999999999999999999999998842238999999999853 1 23 4799999997 6889
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc---cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCe
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS---QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~l 150 (290)
.+|+.+++.+....+.. ....+..+++.++++.++|.+. .++. +.+|||||||||+|||||+.+|++
T Consensus 113 ~~~v~~~i~~~~~~~~~--~~~~~~~~~~~~~L~~vgL~~~~~~~~~~--------p~~LSgG~~QRv~IArAL~~~P~l 182 (330)
T PRK09473 113 YMRVGEQLMEVLMLHKG--MSKAEAFEESVRMLDAVKMPEARKRMKMY--------PHEFSGGMRQRVMIAMALLCRPKL 182 (330)
T ss_pred CCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCCChHHHhcCC--------cccCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999876544321 1233344567889999999753 2444 567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+||||++||+.++.+++++|++++++.|.|+|++|||+ ..+..+||++++|++|++++.|++++++
T Consensus 183 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 183 LIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999665689999999997 4778899999999999999999999875
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-47 Score=334.67 Aligned_cols=198 Identities=39% Similarity=0.659 Sum_probs=168.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC---CCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP---DDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~---~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++.. .+++.++|+||++.+++.+||.|
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~---~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 100 (226)
T cd03234 24 NDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT---TSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRE 100 (226)
T ss_pred cCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCC---CceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHH
Confidence 47999999999999999999999999999999998 6 48999999998754 35678999999999999999999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHH-HHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINS-LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.|+.................+.+ +++.+++.+..++. +..|||||+|||+|||+|+.+|++|||||||+
T Consensus 101 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~illlDEP~~ 172 (226)
T cd03234 101 TLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL--------VKGISGGERRRVSIAVQLLWDPKVLILDEPTS 172 (226)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc--------ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCc
Confidence 9998754332111111122233445 88899998777777 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|||+.++..+.++|++++ +.|.|+|++||++..++.++||++++|++|++++.|
T Consensus 173 gLD~~~~~~~~~~l~~~~-~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 173 GLDSFTALNLVSTLSQLA-RRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999984 458999999999734789999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-47 Score=334.85 Aligned_cols=197 Identities=25% Similarity=0.365 Sum_probs=164.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
.|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|+++.. .+++.++|++|++ .+++.
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 22 DDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred cCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 4799999999999999999999999999999999984 8999999998753 2456899999997 56778
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+||++|+.+......... ........+.++++.+++. ...++. +.+|||||||||+|||||+.+|++|||
T Consensus 99 ~tv~~nl~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lllL 169 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPEEVLNRY--------PHELSGGQRQRVAIARALALNPKLLIA 169 (228)
T ss_pred CCHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHCCCChhHhhCC--------chhcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999999988654332111 1111112235788999995 566777 455999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
||||+|||+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|+++..|
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 170 DEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999554489999999997 4777899999999999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=338.66 Aligned_cols=201 Identities=26% Similarity=0.430 Sum_probs=173.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..++.++|+||++.+++.+||.
T Consensus 20 ~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (241)
T PRK10895 20 EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVY 96 (241)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHH
Confidence 4899999999999999999999999999999999984 7999999998753 1356799999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.+....... .........+.++++.+++.+..++. +..|||||||||+|||||+.+|++|||||||+
T Consensus 97 enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (241)
T PRK10895 97 DNLMAVLQIRDD--LSAEQREDRANELMEEFHIEHLRDSM--------GQSLSGGERRRVEIARALAANPKFILLDEPFA 166 (241)
T ss_pred HHHhhhhhcccc--cCHHHHHHHHHHHHHHcCCHHHhhcc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 999876432211 11223345678899999998777777 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+.+.|++++ ++|.|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 167 ~LD~~~~~~l~~~l~~~~-~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 167 GVDPISVIDIKRIIEHLR-DSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred cCCHHHHHHHHHHHHHHH-hcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 999999999999999984 4589999999997 5788999999999999999999988654
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-47 Score=345.49 Aligned_cols=213 Identities=26% Similarity=0.404 Sum_probs=178.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCC-CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDL-FSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~-~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.+||+||++. .+...|
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 99 (283)
T PRK13636 23 KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSAS 99 (283)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcccc
Confidence 4899999999999999999999999999999999984 8999999998731 25678999999863 334579
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.++...... ......+++.++++.++|.+..++. +..||||||||++|||||+.+|++||||||
T Consensus 100 v~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~--------~~~LS~G~~qrl~laraL~~~p~lLilDEP 168 (283)
T PRK13636 100 VYQDVSFGAVNLKL---PEDEVRKRVDNALKRTGIEHLKDKP--------THCLSFGQKKRVAIAGVLVMEPKVLVLDEP 168 (283)
T ss_pred HHHHHHhHHHHcCC---CHHHHHHHHHHHHHHCCChhhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99999886543221 2223335678899999999888888 556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCCCC
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPCPY 231 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~~~ 231 (290)
|+|||+.++..++++|++++++.|+|||++||++ +++..+||++++|++|++++.|++++++. .+...+.++|.
T Consensus 169 t~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T PRK13636 169 TAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLPR 245 (283)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCc
Confidence 9999999999999999999655589999999997 47788999999999999999999988754 33345555443
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-47 Score=339.67 Aligned_cols=202 Identities=27% Similarity=0.394 Sum_probs=173.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----------------cccccEEEEc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----------------KFRSACGFMY 66 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----------------~~~~~ig~v~ 66 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 93 (252)
T TIGR03005 17 DGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF 93 (252)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence 4899999999999999999999999999999999984 8999999998731 2356899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 67 Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
|++.+++.+||.||+.++...... .........+.++++.+|+.+..++. +..||||||||++|||||+.
T Consensus 94 q~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrv~laral~~ 163 (252)
T TIGR03005 94 QSFNLFPHKTVLDNVTEAPVLVLG--MARAEAEKRAMELLDMVGLADKADHM--------PAQLSGGQQQRVAIARALAM 163 (252)
T ss_pred cCcccCCCCcHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCChhHhhcC--------hhhcCHHHHHHHHHHHHHHc
Confidence 999999999999999875422110 11222334578899999998877777 55699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|++|||||||+|||+.++..+.+.|++++++.|.|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 164 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 164 RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999998554589999999997 5788899999999999999999988653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-47 Score=339.99 Aligned_cols=200 Identities=26% Similarity=0.391 Sum_probs=172.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----------------cccccEEEEc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----------------KFRSACGFMY 66 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----------------~~~~~ig~v~ 66 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.++|++
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 98 (257)
T PRK10619 22 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF 98 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceEEEe
Confidence 4899999999999999999999999999999999984 7999999988641 2356799999
Q ss_pred cCCCCCCCCCHHHHHHHHHH-hcCchhhhHHHHHHHHHHHHHHcCCCCcc-CcccCCcCCCCCCCCChHHHHHHHHHHHH
Q psy2520 67 QHDLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQ-HTRIGSSSITQKVVLSGGERKRLSFATEL 144 (290)
Q Consensus 67 Q~~~~~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~v~~~~~~~~~~LSgGqrqRv~ia~aL 144 (290)
|++.+++.+||+||+.++.. ... .......+++.++++.+|+.+.. ++. +.+||||||||++|||||
T Consensus 99 q~~~l~~~~sv~enl~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~~LS~G~~qrv~laral 167 (257)
T PRK10619 99 QHFNLWSHMTVLENVMEAPIQVLG---LSKQEARERAVKYLAKVGIDERAQGKY--------PVHLSGGQQQRVSIARAL 167 (257)
T ss_pred cCcccCCCCcHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCChhhhhCC--------cccCCHHHHHHHHHHHHH
Confidence 99999999999999987542 211 11223345678899999998764 666 456999999999999999
Q ss_pred HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 145 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 145 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.+|++|||||||+|||+.++..+.++|++++ +.|.|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 99999999999999999999999999999994 4589999999997 5788899999999999999999988653
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=331.33 Aligned_cols=196 Identities=26% Similarity=0.428 Sum_probs=169.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.++|++|++.+++.+|+.||+
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~ 91 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNI 91 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHH
Confidence 4899999999999999999999999999999999984 8999999998753 3567799999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.+........ . .....++.++++.+++.+..++. +..||||||||++|||||+.+|+++||||||++||
T Consensus 92 ~~~~~~~~~~--~-~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 160 (213)
T TIGR01277 92 GLGLHPGLKL--N-AEQQEKVVDAAQQVGIADYLDRL--------PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160 (213)
T ss_pred HhHhhccCCc--c-HHHHHHHHHHHHHcCcHHHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 8754321110 1 12234567899999998888887 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
+.++..+.++|+++.++.|.|||++||++ .++.++||++++|++|+++..|+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 161 PLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999998554589999999997 47788999999999999998774
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-47 Score=340.56 Aligned_cols=197 Identities=30% Similarity=0.472 Sum_probs=170.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ....++|++|++.+++.+||.||+.+
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~-~~~~~~~v~q~~~~~~~~tv~e~l~~ 93 (255)
T PRK11248 18 EDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG-PGAERGVVFQNEGLLPWRNVQDNVAF 93 (255)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCC-CCCcEEEEeCCCccCCCCcHHHHHHh
Confidence 5899999999999999999999999999999999984 8999999998753 33469999999989999999999988
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
...... .......+++.++++.++|.+..++. +..|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 94 ~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~ 162 (255)
T PRK11248 94 GLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRY--------IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAF 162 (255)
T ss_pred HHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 654321 11222334578899999998877777 4569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe--CCeEEEEcCHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--DSRTAFIGSKD 216 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~--~G~i~~~g~~~ 216 (290)
++..+.++|++++++.|.|||++||++ .++..+||++++|+ +|+++..++.+
T Consensus 163 ~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 163 TREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999998554589999999997 57889999999998 59999877653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=332.63 Aligned_cols=192 Identities=29% Similarity=0.465 Sum_probs=166.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++| +++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+||.||
T Consensus 17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (211)
T cd03264 17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF 92 (211)
T ss_pred cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHH
Confidence 4899999999 99999999999999999999999984 8999999988753 346789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....... ...+..+.+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+||
T Consensus 93 l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 161 (211)
T cd03264 93 LDYIAWLKGI---PSKEVKARVDEVLELVNLGDRAKKK--------IGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161 (211)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHCCCHHHHhCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 9986544321 1122234578899999998877877 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+.++..+.+.|++++ + +.|||++||++ .++.++||++++|++|+++..|
T Consensus 162 D~~~~~~l~~~l~~~~-~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 162 DPEERIRFRNLLSELG-E-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CHHHHHHHHHHHHHHh-C-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999994 4 48999999997 4678899999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-47 Score=333.15 Aligned_cols=191 Identities=29% Similarity=0.458 Sum_probs=163.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c---cc-ccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K---FR-SACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~---~~-~~ig~v~Q~~~~~~~l 75 (290)
.++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. . ++ +.++|++|++.+++.+
T Consensus 22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 4799999999999999999999999999999999984 8999999998743 1 22 5799999999899999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||+||+.+....+.. ......+.+.++++.+|+.+..++. +..|||||||||+|||||+.+|++|||||
T Consensus 99 tv~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 99 TALENVAMPLLIGKK---SVKEAKERAYEMLEKVGLEHRINHR--------PSELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred cHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------hhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 999999886543221 1122234567899999998888887 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 210 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~ 210 (290)
||+|||+.++..+.+.|++++++.|.|||++||++. ++ ..+|++++|++|+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 999999999999999999996555899999999974 55 458999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-47 Score=334.15 Aligned_cols=204 Identities=26% Similarity=0.366 Sum_probs=171.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-CCCccEEEECCEecCc-cc-cccEEEEccCCC--CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD-CIIDGDIRVNGKPVEG-KF-RSACGFMYQHDL--FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~-~~~~G~I~i~G~~~~~-~~-~~~ig~v~Q~~~--~~~~lTv~ 78 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. ...+|+|+++|+++.. .. ++.++|++|++. +++.+|+.
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~ 82 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMG 82 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHH
Confidence 5899999999999999999999999999999999871 0027999999998754 22 357999999974 56778999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC---CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLM---NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
+++.+........ . ....+++.++++.+++. +..++. +..|||||||||+|||||+.+|++|||||
T Consensus 83 ~~~~~~~~~~~~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 83 NHAIETLRSLGKL--S-KQARALILEALEAVGLPDPEEVLKKY--------PFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred HHHHHHHHHcCcc--H-HHHHHHHHHHHHHcCCCchHHHHhCC--------hhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9998765432111 1 22345578899999997 455666 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+|||+.++..+.+.|++++++.|+|||++||++ .++..+||++++|++|+++..|++++++
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999554589999999997 4788899999999999999999988664
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-47 Score=343.38 Aligned_cols=206 Identities=24% Similarity=0.377 Sum_probs=179.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC-C-CCCCccEEEECCEecCc-------cc-cccEEEEccCC--CC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP-D-DCIIDGDIRVNGKPVEG-------KF-RSACGFMYQHD--LF 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~-~-~~~~~G~I~i~G~~~~~-------~~-~~~ig~v~Q~~--~~ 71 (290)
.||||++++||++||+|.|||||||+.+.|+|+++ | ....+|+|.|+|+++.. ++ .+.|+|+||++ .|
T Consensus 22 ~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sL 101 (316)
T COG0444 22 DGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSL 101 (316)
T ss_pred eceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhc
Confidence 58999999999999999999999999999999997 4 33467999999998743 22 35799999996 68
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC---ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
.|.+||.+.+.-....+.... .+.+..+++.++|+.+||.+ ..+.+ +.+|||||||||.||.||+.+|
T Consensus 102 nPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y--------PhelSGGMrQRV~IAmala~~P 172 (316)
T COG0444 102 NPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY--------PHELSGGMRQRVMIAMALALNP 172 (316)
T ss_pred CChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC--------CcccCCcHHHHHHHHHHHhCCC
Confidence 899999999887766543211 23445667889999999975 45666 6679999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
++||.||||++||...+.+|+++|++++++.|+++|+||||+ ..+.++||||+||+.|++++.|++++++
T Consensus 173 ~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred CEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999999999999877899999999998 5899999999999999999999999876
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=333.52 Aligned_cols=192 Identities=26% Similarity=0.370 Sum_probs=166.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+|
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (222)
T PRK10908 19 QGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRT 95 (222)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccccccc
Confidence 4899999999999999999999999999999999984 8999999998743 14578999999998888999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+.||+.+....... ...+....+.++++.+++.+..++. +..||||||||++|||||+.+|++||||||
T Consensus 96 v~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEP 164 (222)
T PRK10908 96 VYDNVAIPLIIAGA---SGDDIRRRVSAALDKVGLLDKAKNF--------PIQLSGGEQQRVGIARAVVNKPAVLLADEP 164 (222)
T ss_pred HHHHHHhHHHhcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------chhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99999886543321 1222334567899999998877777 456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
|+|||+.++..+.+.|+++++ .|.|||++||++ .++..+||++++|++|+++.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 165 TGNLDDALSEGILRLFEEFNR-VGVTVLMATHDI-GLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999954 489999999997 57888999999999999753
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=331.63 Aligned_cols=189 Identities=29% Similarity=0.434 Sum_probs=162.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC-CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL-FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~-~~~~lTv~ 78 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++|++. .++.+||.
T Consensus 18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~ 94 (211)
T cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVE 94 (211)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHH
Confidence 4899999999999999999999999999999999984 8999999998753 24578999999874 36678999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.+....... ........+.++++.+++.+..+++ +..|||||||||+|||||+.+|++|||||||+
T Consensus 95 ~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 95 EEVAFGLENLGL---PEEEIEERVEEALELVGLEGLRDRS--------PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHHHcCcHhhhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 999886543211 1122234577899999998877877 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
|||+.++..+++.|+++++ +|.|||++||++ .++..+||++++|++|+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 164 GLDPAGRRELLELLKKLKA-EGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999954 489999999997 57888999999999885
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-47 Score=340.16 Aligned_cols=201 Identities=31% Similarity=0.428 Sum_probs=172.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|+++|.++.. .+++.++|++|++.+++.+||+|
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 95 (258)
T PRK13548 19 DDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEE 95 (258)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHH
Confidence 4899999999999999999999999999999999984 8999999998743 24567999999988888899999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH------hCCCeEEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL------TDPALLLC 153 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~------~~p~llll 153 (290)
|+.+....... ........+.++++.+++.+..++. +.+|||||||||+|||||+ .+|++|||
T Consensus 96 ~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgGe~qrv~la~al~~~~~~~~~p~lllL 164 (258)
T PRK13548 96 VVAMGRAPHGL---SRAEDDALVAAALAQVDLAHLAGRD--------YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLL 164 (258)
T ss_pred HHHhhhcccCC---CcHHHHHHHHHHHHHcCCHhHhcCC--------cccCCHHHHHHHHHHHHHhcccccCCCCCEEEE
Confidence 99886432111 1112234567899999998888888 4559999999999999999 59999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||+|||+.++..+.++|++++++.|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 165 DEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999999535689999999997 5788899999999999999999987654
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-47 Score=336.65 Aligned_cols=199 Identities=25% Similarity=0.380 Sum_probs=171.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC----------ccccccEEEEccCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----------GKFRSACGFMYQHDLFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~----------~~~~~~ig~v~Q~~~~~~ 73 (290)
.|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|+++. ..+++.++|+||++.+++
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (242)
T PRK11124 19 FDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP 95 (242)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence 4899999999999999999999999999999999984 899999999862 024567999999999999
Q ss_pred CCCHHHHHHHHH-HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 74 SLTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 74 ~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
.+||.||+.++. ..... ........+.++++.+|+.+..++. +..||||||||++|||||+.+|+++|
T Consensus 96 ~~tv~e~i~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lli 164 (242)
T PRK11124 96 HLTVQQNLIEAPCRVLGL---SKDQALARAEKLLERLRLKPYADRF--------PLHLSGGQQQRVAIARALMMEPQVLL 164 (242)
T ss_pred CCcHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999997532 22111 1122335678899999998888887 45599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||||+|||+.++..+.+.|++++ ++|+|+|++||++ .++..+||++++|.+|++++.|+++++
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~-~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 165 FDEPTAALDPEITAQIVSIIRELA-ETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EcCCCCcCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999994 4589999999997 577889999999999999999988753
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=339.99 Aligned_cols=211 Identities=25% Similarity=0.396 Sum_probs=176.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCC-CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDL-FSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~-~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.|+|+||++. .+...|
T Consensus 19 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (275)
T PRK13639 19 KGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPT 95 (275)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhcccc
Confidence 5899999999999999999999999999999999984 7999999998741 24578999999862 333579
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|.||+.+...... ....+..+++.++++.++|.+..++. +.+||||||||++|||||+.+|+++|||||
T Consensus 96 v~e~i~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 96 VEEDVAFGPLNLG---LSKEEVEKRVKEALKAVGMEGFENKP--------PHHLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999987643221 12223345678899999999888888 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH---HHHHCCCCCC
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPCP 230 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~~ 230 (290)
|+|||+.++..+++.|+++++ .|.|||++||++ .++..+||++++|++|+++..|++++++. .+...+.+.|
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PRK13639 165 TSGLDPMGASQIMKLLYDLNK-EGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIRKANLRLP 239 (275)
T ss_pred CcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcChHHHHhcCCCCC
Confidence 999999999999999999954 489999999997 57888999999999999999999998753 3334454433
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-47 Score=336.85 Aligned_cols=198 Identities=25% Similarity=0.363 Sum_probs=168.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.++||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||.
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (237)
T PRK11614 22 HEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE 98 (237)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHH
Confidence 4799999999999999999999999999999999984 7999999998753 1356799999999899999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHc-CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIEL-GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
||+.+...... .......+.++++.+ ++.+..++. +..||||||||++|||||+.+|++|||||||
T Consensus 99 ~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~illlDEPt 165 (237)
T PRK11614 99 ENLAMGGFFAE-----RDQFQERIKWVYELFPRLHERRIQR--------AGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165 (237)
T ss_pred HHHHHhhhccC-----hhHHHHHHHHHHHHHHHHHHHHhCc--------hhhCCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 99988542211 111123455667776 466666666 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+.+.|++++ ++|.|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 166 ~~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 166 LGLAPIIIQQIFDTIEQLR-EQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred ccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 9999999999999999985 4589999999997 5789999999999999999999998764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=340.69 Aligned_cols=200 Identities=26% Similarity=0.360 Sum_probs=171.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCC-CCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDL-FSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~-~~~~lTv 77 (290)
.|+||+|++||+++|+|||||||||||++|+|+++|+ +|+|+++|.++.. .+++.+||++|++. .+...||
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 95 (274)
T PRK13644 19 ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV 95 (274)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence 4899999999999999999999999999999999984 8999999998742 24567999999964 3666899
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
+||+.|...... .......+.+.++++.++|.+..++. +..|||||||||+|||||+.+|++|||||||
T Consensus 96 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 96 EEDLAFGPENLC---LPPIEIRKRVDRALAEIGLEKYRHRS--------PKTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred HHHHHhhHHHcC---CCHHHHHHHHHHHHHHCCCHHHhcCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 999988654321 12223335578899999998888887 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+|||+.++..+++.|++++ +.|.|||++||++. ++ ..||++++|++|+++..|++++++.
T Consensus 165 ~gLD~~~~~~l~~~l~~l~-~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 165 SMLDPDSGIAVLERIKKLH-EKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred ccCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999995 45899999999974 56 5799999999999999999987653
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-47 Score=331.09 Aligned_cols=191 Identities=27% Similarity=0.442 Sum_probs=164.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~lTv 77 (290)
.++||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|++|++.+++.+|+
T Consensus 17 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (213)
T cd03262 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV 93 (213)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCCCCcH
Confidence 4899999999999999999999999999999999984 8999999998732 246789999999999999999
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
.||+.++...... .......+.+.++++.+++.+..++. +.+||||||||++|||||+.+|++|||||||
T Consensus 94 ~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 94 LENITLAPIKVKG--MSKAEAEERALELLEKVGLADKADAY--------PAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred HHHHHhHHHHhcC--CCHHHHHHHHHHHHHHcCCHhHhhhC--------ccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999886431111 11222335578899999998877887 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
+|||+.++..+.+.|+++++ .|+|||++||++ .++.++||++++|++|++
T Consensus 164 ~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 164 SALDPELVGEVLDVMKDLAE-EGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred cCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999954 589999999997 578889999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=340.63 Aligned_cols=202 Identities=21% Similarity=0.292 Sum_probs=171.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. .+++.++|+||++ .+++.
T Consensus 28 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 104 (265)
T TIGR02769 28 TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPR 104 (265)
T ss_pred eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCC
Confidence 4899999999999999999999999999999999984 8999999998753 1356799999986 46778
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+||+||+.+...... .........++.++++.+++. ...++. +..|||||||||+|||||+.+|++|||
T Consensus 105 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~~LSgGe~qrv~laral~~~p~illL 174 (265)
T TIGR02769 105 MTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL--------PRQLSGGQLQRINIARALAVKPKLIVL 174 (265)
T ss_pred CCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999987543211 011122335578899999996 566777 455999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||++||+.++..+.+.|++++++.|.|||++||++ ..+..+||++++|++|+++..|+++++.
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 175 DEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 9999999999999999999999554589999999997 5788899999999999999999998764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-47 Score=330.34 Aligned_cols=191 Identities=31% Similarity=0.427 Sum_probs=166.4
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~lT 76 (290)
|+||++++ |+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 89999999 999999999999999999999999984 8999999998642 23567999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+.+|+.+...... .....+++.++++.+++.+..++. +.+||||||||++||+||+.+|++||||||
T Consensus 92 ~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEP 158 (214)
T cd03297 92 VRENLAFGLKRKR-----NREDRISVDELLDLLGLDHLLNRY--------PAQLSGGEKQRVALARALAAQPELLLLDEP 158 (214)
T ss_pred HHHHHHHHHhhCC-----HHHHHHHHHHHHHHcCCHhHhhcC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999987653221 112334578899999998777777 456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+|||+.++..+.++|++++++.|.|||++||++ .++..+||++++|++|+++..|
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 159 FSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999654589999999997 5788899999999999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=335.27 Aligned_cols=202 Identities=25% Similarity=0.369 Sum_probs=172.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++.. ..++.++|+||++.+++.+||+
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 95 (242)
T TIGR03411 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVF 95 (242)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHH
Confidence 4799999999999999999999999999999999984 8999999998753 1245699999999999999999
Q ss_pred HHHHHHHHhcCc--h---hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 79 EHLYFMALLKLD--R---RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 79 e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
||+.++...... . .........++.++++.+++.+..++. +..|||||||||+|||||+.+|++|||
T Consensus 96 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~Ge~qrv~laral~~~p~~lll 167 (242)
T TIGR03411 96 ENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL--------AGLLSHGQKQWLEIGMLLMQDPKLLLL 167 (242)
T ss_pred HHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999886432100 0 001122345678899999998888887 455999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||+|||+.++..+++.|++++ + ++|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 168 DEPVAGMTDEETEKTAELLKSLA-G-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred cCCccCCCHHHHHHHHHHHHHHh-c-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999994 4 68999999997 5788899999999999999999988653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=332.99 Aligned_cols=195 Identities=31% Similarity=0.458 Sum_probs=162.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCC--CCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS--PSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~--~~lTv~e~l 81 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++. .+++.++|+||++.++ +.+||+||+
T Consensus 16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~tv~e~l 91 (213)
T cd03235 16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE-KERKRIGYVPQRRSIDRDFPISVRDVV 91 (213)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH-HHHhheEEeccccccccCCCCcHHHHH
Confidence 4799999999999999999999999999999999984 899999998764 3566899999997653 347999999
Q ss_pred HHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 82 YFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
.+........ ........+++.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 163 (213)
T cd03235 92 LMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ--------IGELSGGQQQRVLLARALVQDPDLLLLDEPFAGV 163 (213)
T ss_pred HhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 8854321100 001112234578899999998777877 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+.++..+.+.|+++++ .|.|||++||++ .++.++||++++|++| +++.|
T Consensus 164 D~~~~~~l~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 164 DPKTQEDIYELLRELRR-EGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred CHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999954 589999999997 5788899999999876 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-47 Score=340.72 Aligned_cols=191 Identities=27% Similarity=0.396 Sum_probs=168.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++. .+++.++|++|++.+++.+||+||+.+
T Consensus 29 ~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~ 104 (257)
T PRK11247 29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLA-EAREDTRLMFQDARLLPWKKVIDNVGL 104 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHH-HhhCceEEEecCccCCCCCcHHHHHHh
Confidence 4799999999999999999999999999999999984 899999998763 356789999999989998999999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
... . . ....+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 105 ~~~--~--~-----~~~~~~~~l~~~gl~~~~~~~--------~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~ 167 (257)
T PRK11247 105 GLK--G--Q-----WRDAALQALAAVGLADRANEW--------PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDAL 167 (257)
T ss_pred ccc--c--h-----HHHHHHHHHHHcCChhHhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 531 0 0 123467899999998888887 4569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
++..+.++|++++++.|.|||++||++ .++..+||++++|++|+++..++.+
T Consensus 168 ~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 168 TRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999998555689999999997 4788899999999999999887654
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=340.62 Aligned_cols=200 Identities=22% Similarity=0.299 Sum_probs=170.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCC-CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDL-FSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~-~~~~lT 76 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|+||++. .+...|
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 94 (271)
T PRK13638 18 KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTD 94 (271)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccccc
Confidence 4899999999999999999999999999999999984 8999999998741 24567999999865 234568
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+.+|+.+....... ......+.+.++++.+++.+..++. +..||||||||++|||||+.+|++||||||
T Consensus 95 ~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrl~laraL~~~p~lllLDEP 163 (271)
T PRK13638 95 IDSDIAFSLRNLGV---PEAEITRRVDEALTLVDAQHFRHQP--------IQCLSHGQKKRVAIAGALVLQARYLLLDEP 163 (271)
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCHhHhcCC--------chhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99999886443211 1222234567899999998888877 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+.++|++++ +.|.|||++||++ .++..+||++++|++|+++..|++++++
T Consensus 164 t~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 164 TAGLDPAGRTQMIAIIRRIV-AQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred cccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999995 4589999999997 5788899999999999999999998765
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-48 Score=395.59 Aligned_cols=264 Identities=33% Similarity=0.566 Sum_probs=237.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC-ccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-GKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~-~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|||+.++||-++||||+|||||||||++|+|+... +.++|+|+++|.+.. ..+++.+|||.|+|.+.+.+||+|.|.
T Consensus 808 ~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~ 886 (1391)
T KOG0065|consen 808 NNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLR 886 (1391)
T ss_pred hcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHH
Confidence 489999999999999999999999999999999754 347999999999998 468999999999999999999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC-CeEEEeCCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP-ALLLCDEPTTGLD 161 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p-~llllDEPtsgLD 161 (290)
|.+.+|.+..++..++.+.++++++.++|.+.++..||.++ .+||..||||+.||..|+.+| .||+|||||||||
T Consensus 887 fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G----~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLD 962 (1391)
T KOG0065|consen 887 FSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG----SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD 962 (1391)
T ss_pred HHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC----CCCCHHHhceeeEEEEEecCCceeEEecCCCCCcc
Confidence 99999988888888888999999999999999999999874 469999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe-CCeEEEEcCHHH----HHHHHHHCC-CCCCCCCCh
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DSRTAFIGSKDA----ALAFLESQG-YPCPYGYNP 235 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~-~G~i~~~g~~~~----~~~~~~~~g-~~~~~~~~~ 235 (290)
..++-.+++++++++ +.|+||+++.|||+..+++.||++++|+ .|+.+|.|+..+ +++||++.+ .+||...||
T Consensus 963 sqaA~~i~~~lrkla-~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NP 1041 (1391)
T KOG0065|consen 963 SQAAAIVMRFLRKLA-DTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENP 1041 (1391)
T ss_pred HHHHHHHHHHHHHHH-hcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCCh
Confidence 999999999999995 5799999999999999999999999998 689999998754 667999876 789988899
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHHHHHhhhchhHHhHhhhhh
Q psy2520 236 ADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEIN 278 (290)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 278 (290)
++++.++.....+.+ .-..+++.|+.|+.++++-++++
T Consensus 1042 A~~mLevi~~~~~~~-----~~~D~a~~w~~S~e~k~~~e~v~ 1079 (1391)
T KOG0065|consen 1042 AEWMLEVIGAGAEAS-----LSVDFAEIWKNSEEYKRNKELVK 1079 (1391)
T ss_pred HHHHHhhcccccccc-----cCccHHHHHhccHHHHHHHHHHH
Confidence 999999876433322 22367899999999999988875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=333.42 Aligned_cols=197 Identities=25% Similarity=0.361 Sum_probs=168.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.++.. ..++.++|+||++.+++.+|+.
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (230)
T TIGR03410 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE 93 (230)
T ss_pred cceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence 5899999999999999999999999999999999984 8999999998753 1346799999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELG-LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
||+.++...... .. .+.+.++++.++ +.+..++. +.+||||||||++|||||+.+|+++||||||
T Consensus 94 ~~l~~~~~~~~~---~~---~~~~~~~l~~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 94 ENLLTGLAALPR---RS---RKIPDEIYELFPVLKEMLGRR--------GGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred HHHHHHHHhcCc---ch---HHHHHHHHHHHHhHHHHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999886543211 11 123456677776 55666777 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
+|||+.++..+.++|.+++++.|+|||++||++ .++..+||++++|++|+++..|+++++
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999998554589999999997 578889999999999999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=339.52 Aligned_cols=200 Identities=21% Similarity=0.289 Sum_probs=172.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC-CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL-FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~-~~~~lTv~ 78 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.++|++|++. +++..|+.
T Consensus 26 ~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 102 (269)
T PRK13648 26 KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK 102 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHH
Confidence 5899999999999999999999999999999999984 8999999998753 35678999999974 67778999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
+|+.|....... ......+.+.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 103 ~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 171 (269)
T PRK13648 103 YDVAFGLENHAV---PYDEMHRRVSEALKQVDMLERADYE--------PNALSGGQKQRVAIAGVLALNPSVIILDEATS 171 (269)
T ss_pred HHHHhhHHhcCC---CHHHHHHHHHHHHHHcCCchhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 999886543221 1222334577899999998888887 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+++.|++++++.|.|||++||++. ++. .||++++|++|+++..|+++++.
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 172 MLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999985545899999999974 665 49999999999999999998764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-47 Score=341.47 Aligned_cols=204 Identities=24% Similarity=0.322 Sum_probs=173.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.++|+||++.+++.+||.|
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (265)
T PRK10575 28 HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE 104 (265)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHH
Confidence 5799999999999999999999999999999999984 7999999998743 34567999999988888999999
Q ss_pred HHHHHHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.+....... ...........+.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~laral~~~p~lllLDEPt~ 176 (265)
T PRK10575 105 LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL--------VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTS 176 (265)
T ss_pred HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99875321100 0000112234577899999998877887 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+.+.|++++++.|.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 177 ~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 177 ALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999554589999999997 5788999999999999999999887653
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=339.83 Aligned_cols=206 Identities=27% Similarity=0.397 Sum_probs=173.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---------cccccEEEEccCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---------KFRSACGFMYQHDLFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---------~~~~~ig~v~Q~~~~~~~ 74 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|+...+|+|+++|+++.. .+++.++|+||++.+++.
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 100 (262)
T PRK09984 21 HAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNR 100 (262)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccC
Confidence 58999999999999999999999999999999998852236999999998742 235679999999999999
Q ss_pred CCHHHHHHHHHHhcCch-----hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 75 LTVYEHLYFMALLKLDR-----RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
+||+||+.+......+. .........++.++++.+++.+..++. +..|||||||||+|||||+.+|+
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ 172 (262)
T PRK09984 101 LSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR--------VSTLSGGQQQRVAIARALMQQAK 172 (262)
T ss_pred CcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC--------ccccCHHHHHHHHHHHHHhcCCC
Confidence 99999998754211000 000122335678899999998878887 45599999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
+|||||||+|||+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|++++.|+++++
T Consensus 173 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 173 VILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999999999999655589999999997 468899999999999999999998753
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=341.94 Aligned_cols=204 Identities=24% Similarity=0.392 Sum_probs=173.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC-CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL-FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~-~~~~lTv~ 78 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|....+|+|+++|+++.. ..++.+||+||++. +++.+||+
T Consensus 24 ~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~ 103 (282)
T PRK13640 24 NDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVG 103 (282)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHH
Confidence 48999999999999999999999999999999998841113999999999853 24568999999974 67778999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.|...... ....+..+++.++++.++|.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 104 enl~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~--------~~~LS~G~~qrv~laral~~~P~llllDEPt~ 172 (282)
T PRK13640 104 DDVAFGLENRA---VPRPEMIKIVRDVLADVGMLDYIDSE--------PANLSGGQKQRVAIAGILAVEPKIIILDESTS 172 (282)
T ss_pred HHHHhhHHhCC---CCHHHHHHHHHHHHHHCCChhHhcCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 99988653321 12233345678899999999888888 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||+.++..+.+.|++++++.|.|||++||++. ++ .+||++++|++|++++.|++++++.
T Consensus 173 gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 173 MLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999995545899999999974 55 5899999999999999999987753
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=335.53 Aligned_cols=204 Identities=24% Similarity=0.332 Sum_probs=171.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv 77 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. ..++|+|.++|+++.. .+++.+||+||++.+++.+||
T Consensus 20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 99 (250)
T PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSI 99 (250)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcH
Confidence 4899999999999999999999999999999998741 1147999999998753 356789999999888899999
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
.||+.++....... ....+..+.+.++++.+++.+ ..++. +.+|||||||||+|||||+.+|++|||
T Consensus 100 ~enl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgG~~qrv~laral~~~p~lllL 170 (250)
T PRK14247 100 FENVALGLKLNRLV-KSKKELQERVRWALEKAQLWDEVKDRLDAP--------AGKLSGGQQQRLCIARALAFQPEVLLA 170 (250)
T ss_pred HHHHHHHHHhcccc-CCHHHHHHHHHHHHHHcCCCcchhhhhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999865432110 112233456788999999854 34555 456999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||+|||+.++..+.+.|+++ .+ |.|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 171 DEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 171 DEPTANLDPENTAKIESLFLEL-KK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred cCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9999999999999999999998 44 78999999997 4778899999999999999999998664
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=348.96 Aligned_cols=207 Identities=21% Similarity=0.275 Sum_probs=171.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-CCCccEEEECCEecCc----c----ccccEEEEccCCC--CC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD-CIIDGDIRVNGKPVEG----K----FRSACGFMYQHDL--FS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~-~~~~G~I~i~G~~~~~----~----~~~~ig~v~Q~~~--~~ 72 (290)
.||||+|.+||+++|+|+||||||||+++|+|+++|. ..++|+|+++|+++.. . .++.|+||||++. +.
T Consensus 24 ~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~ 103 (330)
T PRK15093 24 DRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLD 103 (330)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcC
Confidence 5899999999999999999999999999999998742 1248999999998753 1 1357999999974 67
Q ss_pred CCCCHHHHHHHHHHhcC--chh-hhHHHHHHHHHHHHHHcCCCC---ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 73 PSLTVYEHLYFMALLKL--DRR-VKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~~l~~---~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
+.+||.+++.+...... ... ....+..+++.++++.+||.+ ..++. +.+|||||||||+|||||+.
T Consensus 104 p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~--------p~~LSgG~~QRv~iArAL~~ 175 (330)
T PRK15093 104 PSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF--------PYELTEGECQKVMIAIALAN 175 (330)
T ss_pred ccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC--------chhCCHHHHHHHHHHHHHHC
Confidence 88999999986432111 000 011223456789999999975 34566 56699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|++|||||||++||+.++.+++++|++++++.|.|||+||||+ ..+.++||++++|++|++++.|++++++
T Consensus 176 ~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 176 QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999655689999999997 5788999999999999999999998765
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-47 Score=340.89 Aligned_cols=204 Identities=24% Similarity=0.317 Sum_probs=173.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++.+|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+||+|
T Consensus 24 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 100 (265)
T PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQE 100 (265)
T ss_pred eecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHH
Confidence 4899999999999999999999999999999999984 7999999998753 24567999999999898999999
Q ss_pred HHHHHHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.++...... ...........+.++++.+++.+..++. +.+||||||||++|||||+.+|++|||||||+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~llllDEPt~ 172 (265)
T PRK10253 101 LVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS--------VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTT 172 (265)
T ss_pred HHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC--------cccCChHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 99875211100 0000112234577899999998878887 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+.+.|++++++.|.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 173 gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 173 WLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999554589999999997 5789999999999999999999988764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=339.42 Aligned_cols=201 Identities=21% Similarity=0.344 Sum_probs=172.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCC-CCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDL-FSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~-~~~~lTv 77 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.+||+||++. .+...||
T Consensus 27 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 103 (280)
T PRK13633 27 DDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV 103 (280)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhccccH
Confidence 4799999999999999999999999999999999984 8999999998753 24678999999863 2334699
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
.+|+.|+...... ......+.+.++++.+||.+..++. +..|||||||||+|||+|+.+|+++||||||
T Consensus 104 ~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEPt 172 (280)
T PRK13633 104 EEDVAFGPENLGI---PPEEIRERVDESLKKVGMYEYRRHA--------PHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172 (280)
T ss_pred HHHHHhhHhhcCC---CHHHHHHHHHHHHHHCCCHhHhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 9999987543221 2223345678899999999888888 5569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+|||+.++..+.+.|++++++.|.|||++||++. ++.. ||++++|++|+++..|+++++..
T Consensus 173 ~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999995545899999999974 5654 99999999999999999988753
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=341.08 Aligned_cols=200 Identities=23% Similarity=0.358 Sum_probs=170.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCC--CCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHD--LFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~--~~~~ 73 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. .+++.++|+||++ .+++
T Consensus 24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (280)
T PRK13649 24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE 100 (280)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence 5899999999999999999999999999999999984 8999999998742 2456799999986 4454
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
.||+||+.+....... ......+.+.++++.++|. ...++. +.+||||||||++|||||+.+|++||
T Consensus 101 -~tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~lll 168 (280)
T PRK13649 101 -ETVLKDVAFGPQNFGV---SQEEAEALAREKLALVGISESLFEKN--------PFELSGGQMRRVAIAGILAMEPKILV 168 (280)
T ss_pred -ccHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCChhhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 6999999886543211 1222334567889999997 456777 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||+|||+.++..+.+.|+++++ .|.|||++||++ .++..+||++++|++|+++..|++++++.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 169 LDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999954 589999999997 57888999999999999999999987643
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=334.69 Aligned_cols=196 Identities=25% Similarity=0.355 Sum_probs=169.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++.+|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++ .||+|
T Consensus 20 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 95 (241)
T PRK14250 20 KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKD 95 (241)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHH
Confidence 4899999999999999999999999999999999984 8999999998743 34678999999988886 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.+...... . ...++.++++.+++. +..++. +.+||||||||++|||||+.+|++|||||||+
T Consensus 96 ~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 160 (241)
T PRK14250 96 NIEYGPMLKG----E---KNVDVEYYLSIVGLNKEYATRD--------VKNLSGGEAQRVSIARTLANNPEVLLLDEPTS 160 (241)
T ss_pred HHhcchhhcC----c---HHHHHHHHHHHcCCCHHHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9987543221 1 123467889999996 466666 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|+++..|++.+++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 161 ALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999998554589999999997 4788899999999999999999988653
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=329.93 Aligned_cols=193 Identities=27% Similarity=0.380 Sum_probs=169.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.++....++.++|+||++.+++.+|++||+.+
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~ 93 (223)
T TIGR03740 17 NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKV 93 (223)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHH
Confidence 4799999999999999999999999999999999984 8999999998754323579999999988999999999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....... . ...+.++++.+++.+..++. +.+||||||||++|||||+.+|++|||||||+|||+.
T Consensus 94 ~~~~~~~---~----~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~ 158 (223)
T TIGR03740 94 HTTLLGL---P----DSRIDEVLNIVDLTNTGKKK--------AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI 158 (223)
T ss_pred HHHHcCC---C----HHHHHHHHHHcCCcHHHhhh--------HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHH
Confidence 6543221 1 13467889999998888887 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
++..+++.|++++ +.|.|||++||++ .++..+||++++|++|+++..|++.
T Consensus 159 ~~~~l~~~L~~~~-~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 159 GIQELRELIRSFP-EQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHHHHHH-HCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999999999994 4589999999997 5788899999999999999998875
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=336.24 Aligned_cols=201 Identities=20% Similarity=0.356 Sum_probs=169.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|.. .++|+|.++|+++.. .+++.++|+||++.+++ +
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~ 107 (258)
T PRK14268 29 KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-M 107 (258)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-c
Confidence 48999999999999999999999999999999987510 147999999998742 24567999999988887 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|++||+.|....... ......+.+.++++.+++. +..++. +..|||||||||+|||||+.+|++|
T Consensus 108 tv~enl~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgG~~qrv~laral~~~p~ll 176 (258)
T PRK14268 108 SIYDNVAYGPRIHGA---NKKDLDGVVENALRSAALWDETSDRLKSP--------ALSLSGGQQQRLCIARTLAVKPKII 176 (258)
T ss_pred cHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCCcchhhhhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999987543221 1122234567899999884 344555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..++++|+++ ++ +.|||++||++ .++.++||++++|++|++++.|++++++
T Consensus 177 llDEPt~~LD~~~~~~l~~~l~~l-~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 177 LFDEPTSALDPISTARIEDLIMNL-KK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHH-hh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999998 44 78999999997 5788899999999999999999998653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=338.73 Aligned_cols=200 Identities=26% Similarity=0.393 Sum_probs=171.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC-CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL-FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~-~~~~lTv~ 78 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.++|++|++. .++.+||+
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 102 (271)
T PRK13632 26 KNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVE 102 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHH
Confidence 5799999999999999999999999999999999984 8999999999853 35678999999963 67778999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.++...... ........+.++++.++|.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 103 enl~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~lllLDEP~~ 171 (271)
T PRK13632 103 DDIAFGLENKKV---PPKKMKDIIDDLAKKVGMEDYLDKE--------PQNLSGGQKQRVAIASVLALNPEIIIFDESTS 171 (271)
T ss_pred HHHHhHHHHcCC---CHHHHHHHHHHHHHHcCCHHHhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 999886543211 1222334578899999998888888 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..++++|++++++.+.|||++||++. ++ ..||++++|++|+++..|+++++.
T Consensus 172 gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999995444589999999974 55 489999999999999999988764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=330.51 Aligned_cols=192 Identities=27% Similarity=0.412 Sum_probs=165.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc-------c-cccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-------F-RSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~-------~-~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... . ++.++|+||++.+++.+
T Consensus 27 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 27 TGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 4799999999999999999999999999999999984 89999999987531 1 25799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||.||+.+....+.. ......+++.++++.+++.+..++. +..||||||||++|||||+.+|++|||||
T Consensus 104 tv~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~Ge~qrl~la~al~~~p~llllDE 172 (228)
T PRK10584 104 NALENVELPALLRGE---SSRQSRNGAKALLEQLGLGKRLDHL--------PAQLSGGEQQRVALARAFNGRPDVLFADE 172 (228)
T ss_pred CHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCHhHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999886533211 1223345678899999998887877 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
||+|||+.++..+.+.|++++++.|.|||++||++. ++ ..||++++|++|+++.
T Consensus 173 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 173 PTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 999999999999999999995555899999999974 55 5699999999999874
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=331.28 Aligned_cols=201 Identities=24% Similarity=0.392 Sum_probs=174.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|. +|+|+++|.++.. ..++.++|++|++.+++.+|+.||+
T Consensus 16 ~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 4899999999999999999999999999999999994 7999999998754 2356899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.+...... .......+.+.++++.++|.+..++. +.+||||||||++|||||+.+|+++||||||+|||
T Consensus 93 ~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD 161 (235)
T cd03299 93 AYGLKKRK---VDKKEIERKVLEIAEMLGIDHLLNRK--------PETLSGGEQQRVAIARALVVNPKILLLDEPFSALD 161 (235)
T ss_pred HHHHHHcC---CCHHHHHHHHHHHHHHcCChhHHhcC--------cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCC
Confidence 88653321 11222334567899999998888888 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+.+.|++++.+.|.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 162 ~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 162 VRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999998554589999999997 5788899999999999999999887553
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=337.92 Aligned_cols=202 Identities=28% Similarity=0.408 Sum_probs=172.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+|++|
T Consensus 19 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 95 (255)
T PRK11231 19 NDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRE 95 (255)
T ss_pred eeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHH
Confidence 4799999999999999999999999999999999984 8999999998743 24567999999988888899999
Q ss_pred HHHHHHHhc--CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLK--LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.++.... ...... ......+.++++.+++.+..++. +..|||||||||+|||||+.+|++|||||||
T Consensus 96 ~i~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEP~ 166 (255)
T PRK11231 96 LVAYGRSPWLSLWGRLS-AEDNARVNQAMEQTRINHLADRR--------LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPT 166 (255)
T ss_pred HHHhccchhhhhccCCC-HHHHHHHHHHHHHcCCHHHHcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 998753110 000001 12234567899999998888887 5569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+.+.|+++++ .|.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 167 ~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 167 TYLDINHQVELMRLMRELNT-QGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 99999999999999999844 589999999997 5788999999999999999999887653
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=337.11 Aligned_cols=203 Identities=27% Similarity=0.361 Sum_probs=172.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||.|
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (256)
T TIGR03873 18 DGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRD 94 (256)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHH
Confidence 4899999999999999999999999999999999984 8999999998753 24567999999987788899999
Q ss_pred HHHHHHHhc-CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLK-LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.++.... ...........+++.++++.+++.+..++. +..||||||||++|||||+.+|+++||||||+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 166 (256)
T TIGR03873 95 VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD--------MSTLSGGERQRVHVARALAQEPKLLLLDEPTN 166 (256)
T ss_pred HHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 998853211 000001112234578899999998888887 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+.++|++++ ++|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 167 ~LD~~~~~~l~~~l~~~~-~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 167 HLDVRAQLETLALVRELA-ATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred cCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 999999999999999994 4589999999997 4788999999999999999999988653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-46 Score=337.29 Aligned_cols=201 Identities=20% Similarity=0.330 Sum_probs=173.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC-CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL-FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~-~~~~lTv~ 78 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.+||+||++. +++..||.
T Consensus 24 ~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 24 NGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 5899999999999999999999999999999999984 8999999998753 35678999999963 67778999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.++...... ......+++.++++.++|.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 101 eni~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~lAraL~~~p~llllDEPt~ 169 (277)
T PRK13642 101 DDVAFGMENQGI---PREEMIKRVDEALLAVNMLDFKTRE--------PARLSGGQKQRVAVAGIIALRPEIIILDESTS 169 (277)
T ss_pred HHHHhhHHHcCC---CHHHHHHHHHHHHHHCCCHhHhhCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 999886543211 1222334578899999998888887 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||+.++..+.++|++++++.|.|||++||++. ++. .||++++|++|+++..|++++++.
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 170 MLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999996545899999999974 554 699999999999999999987653
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=334.84 Aligned_cols=204 Identities=25% Similarity=0.371 Sum_probs=170.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecC--c----cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVE--G----KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~--~----~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ ...+|+|+++|+++. . .+++.++|+||++.+++.+
T Consensus 21 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (253)
T PRK14267 21 KGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHL 100 (253)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCC
Confidence 5899999999999999999999999999999999873 113799999999874 1 2456899999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.++...+... .........+.++++.+++.. ..++. +.+||||||||++|||||+.+|++|
T Consensus 101 tv~enl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 171 (253)
T PRK14267 101 TIYDNVAIGVKLNGLV-KSKKELDERVEWALKKAALWDEVKDRLNDY--------PSNLSGGQRQRLVIARALAMKPKIL 171 (253)
T ss_pred cHHHHHHHHHHhcCcc-CCHHHHHHHHHHHHHHcCCccchhhhhccC--------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998865432110 011222345678888888743 34555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ + ++|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 172 llDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 172 LMDEPTANIDPVGTAKIEELLFELK-K-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHh-h-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999984 4 58999999997 4788899999999999999999988654
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-46 Score=335.00 Aligned_cols=202 Identities=23% Similarity=0.360 Sum_probs=169.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|.. .++|+|+++|+++.. .+++.++|++|++.+++ +
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~ 102 (254)
T PRK14273 24 NNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-M 102 (254)
T ss_pred cceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-C
Confidence 58999999999999999999999999999999998631 137999999998742 24678999999988775 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++...... .......+.+.++++.+++. +..++. +.+|||||||||+|||||+.+|++|
T Consensus 103 tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LSgG~~qrv~laral~~~p~ll 172 (254)
T PRK14273 103 SIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNTN--------ALSLSGGQQQRLCIARTLAIEPNVI 172 (254)
T ss_pred cHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhCC--------cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999987543211 11122234567888888873 345665 5669999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..++++|+++ ++ +.|||++||++ .++..+||++++|++|+++..|++++++
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 173 LMDEPTSALDPISTGKIEELIINL-KE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHH-hc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44 68999999997 4788899999999999999999988764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=337.86 Aligned_cols=202 Identities=23% Similarity=0.361 Sum_probs=171.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCC--CCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDL--FSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~--~~~~lTv 77 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++.. ..++.++|+||++. +++.+||
T Consensus 30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 106 (267)
T PRK15112 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI 106 (267)
T ss_pred eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence 4899999999999999999999999999999999994 8999999998753 23457999999864 6778899
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
.+++.+....... .......+.+.++++.+++. +..++. +.+|||||||||+||+||+.+|++||||||
T Consensus 107 ~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (267)
T PRK15112 107 SQILDFPLRLNTD--LEPEQREKQIIETLRQVGLLPDHASYY--------PHMLAPGQKQRLGLARALILRPKVIIADEA 176 (267)
T ss_pred HHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCCChHHHhcC--------chhcCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 9999876543311 11222334578899999994 566666 456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 9999999999999999999654589999999997 5788899999999999999999888654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=341.45 Aligned_cols=201 Identities=20% Similarity=0.342 Sum_probs=169.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---------cccccEEEEccCCCC-CC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---------KFRSACGFMYQHDLF-SP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---------~~~~~ig~v~Q~~~~-~~ 73 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++|++.. +.
T Consensus 28 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 28 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 5899999999999999999999999999999999984 8999999998631 245679999998632 22
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
..||.||+.|....... ......+.+.++++.++|. +..++. +..|||||||||+|||||+.+|++||
T Consensus 105 ~~tv~enl~~~~~~~~~---~~~~~~~~~~~ll~~~~L~~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~lLl 173 (289)
T PRK13645 105 QETIEKDIAFGPVNLGE---NKQEAYKKVPELLKLVQLPEDYVKRS--------PFELSGGQKRRVALAGIIAMDGNTLV 173 (289)
T ss_pred hhHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCChhHhcCC--------hhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 46999999886532211 1222334567889999994 567777 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..++++|++++++.|+|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 174 LDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999998554589999999997 4788999999999999999999988765
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=331.54 Aligned_cols=202 Identities=23% Similarity=0.257 Sum_probs=168.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~--~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++.. . .+..++|++|++.+++.+|
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (243)
T TIGR01978 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVS 93 (243)
T ss_pred eccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecCCCCHHHhhccceEeeeccccccCCcC
Confidence 5899999999999999999999999999999995 56 48999999998753 1 2345999999999999999
Q ss_pred HHHHHHHHHHhcCch----hhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCC-CCChHHHHHHHHHHHHHhCCCe
Q psy2520 77 VYEHLYFMALLKLDR----RVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKV-VLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 77 v~e~l~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~-~LSgGqrqRv~ia~aL~~~p~l 150 (290)
+.|++.+........ ........+.+.++++.+++. ...++. +. .|||||||||+|||||+.+|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~~LS~G~~qrl~la~al~~~p~l 165 (243)
T TIGR01978 94 NLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS--------VNEGFSGGEKKRNEILQMALLEPKL 165 (243)
T ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc--------cccCcCHHHHHHHHHHHHHhcCCCE
Confidence 999998765321100 011222335678899999997 455666 33 3999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhh-cCeEEEEeCCeEEEEcCHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||||||++||+.++..+.++|++++ +.|.|||++||++ .++..+ ||++++|++|+++..|+++++
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~-~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 166 AILDEIDSGLDIDALKIVAEGINRLR-EPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHH-HCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 99999999999999999999999994 4589999999997 467777 899999999999999998754
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=331.26 Aligned_cols=195 Identities=28% Similarity=0.387 Sum_probs=167.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEc-cCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMY-QHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~-Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.++|++ |++.+++.+||.|
T Consensus 38 ~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e 114 (236)
T cd03267 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVID 114 (236)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHH
Confidence 4799999999999999999999999999999999984 8999999987642 3566899998 5567888899999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.+....... ......+.+.++++.+++.+..++. +..||||||||++||+||+.+|++|||||||+|
T Consensus 115 ~l~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 115 SFYLLAAIYDL---PPARFKKRLDELSELLDLEELLDTP--------VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHcCChhHhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 99886544321 1122234567889999998888887 455999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
||+.++..+.++|++++++.+.|||++||++ .++..+||++++|.+|++++.|
T Consensus 184 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 184 LDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999655589999999997 4788899999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=328.84 Aligned_cols=201 Identities=24% Similarity=0.361 Sum_probs=174.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.++|++|++.+++.+|+.+|+
T Consensus 17 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl 93 (232)
T cd03300 17 DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENI 93 (232)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHH
Confidence 4899999999999999999999999999999999984 7999999998754 2356799999999999899999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.+....+.. ......+.+.++++.+++.+..++. +..||+|||||++|||||+.+|+++||||||+|||
T Consensus 94 ~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD 162 (232)
T cd03300 94 AFGLRLKKL---PKAEIKERVAEALDLVQLEGYANRK--------PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162 (232)
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 886543321 1122334567899999998888887 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+.+.|++++++.|.|||++||++ .++.++||++++|++|++++.|+.+++.
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 163 LKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999554589999999997 5788999999999999999999887553
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=332.81 Aligned_cols=202 Identities=22% Similarity=0.378 Sum_probs=167.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+.+ |...++|+|.++|+++.. .+++.++|++|++.+++ .
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~ 101 (253)
T PRK14242 23 HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-K 101 (253)
T ss_pred cceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-C
Confidence 58999999999999999999999999999999864 100147999999998742 24578999999988887 5
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.++....... ......+++.++++.+++.+ ..++. +..|||||||||+|||||+.+|++|
T Consensus 102 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgGq~qrv~laral~~~p~ll 171 (253)
T PRK14242 102 SIFENVAYGLRVNGVK--DKAYLAERVERSLRHAALWDEVKDRLHES--------ALGLSGGQQQRLCIARALAVEPEVL 171 (253)
T ss_pred cHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCchhhhHHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999875432211 11222345678899999854 23555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ ++ +.|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~-~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 172 LMDEPASALDPIATQKIEELIHEL-KA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH-hc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44 68999999997 5788999999999999999999988653
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-46 Score=330.98 Aligned_cols=203 Identities=26% Similarity=0.406 Sum_probs=169.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|....+|+|.++|+++.. .+++.++|+||++.+++ .||+|
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~e 97 (246)
T PRK14269 19 FDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYE 97 (246)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHH
Confidence 48999999999999999999999999999999975211148999999998853 34678999999988887 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|+.++...+.... ......+++.++++.+++.+ ..++. +.+|||||||||+|||||+.+|+++||||
T Consensus 98 ni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lllLDE 168 (246)
T PRK14269 98 NISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQN--------ALALSGGQQQRLCIARALAIKPKLLLLDE 168 (246)
T ss_pred HhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9998654321100 11223345678999999953 34555 45699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+|||+.++..+.+.|+++ .+ |+|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 169 P~~~LD~~~~~~l~~~l~~~-~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 169 PTSALDPISSGVIEELLKEL-SH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred CcccCCHHHHHHHHHHHHHH-hC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999998 44 78999999997 5788899999999999999999988654
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=330.41 Aligned_cols=200 Identities=27% Similarity=0.396 Sum_probs=161.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.++|+||++.+++ .||.|
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 94 (237)
T cd03252 19 DNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRD 94 (237)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHH
Confidence 5899999999999999999999999999999999984 8999999998743 24677999999987775 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.+..................+.++++.+ ++....++. +.+|||||||||+|||||+.+|++|||||||
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--------~~~LSgG~~qrv~laral~~~p~llllDEP~ 166 (237)
T cd03252 95 NIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ--------GAGLSGGQRQRIAIARALIHNPRILIFDEAT 166 (237)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC--------CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 998743211000001001111234455555 455555555 5569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+.+.|+++ ++ |+|||++||++. ++ ..||++++|++|++++.|++++++
T Consensus 167 ~~LD~~~~~~l~~~l~~~-~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 167 SALDYESEHAIMRNMHDI-CA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred ccCCHHHHHHHHHHHHHh-cC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999 44 899999999974 55 579999999999999999988654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=328.01 Aligned_cols=201 Identities=29% Similarity=0.437 Sum_probs=174.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|. +|+|.++|.++.. ..++.++|+||++.+++.+|+.||+
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 93 (237)
T TIGR00968 17 DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNI 93 (237)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHH
Confidence 4899999999999999999999999999999999884 7999999998754 2356799999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.+....+.. ......+.+.++++.+++.+..++. +..||+||+||++|||+|+.+|+++||||||+|||
T Consensus 94 ~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD 162 (237)
T TIGR00968 94 AFGLEIRKH---PKAKIKARVEELLELVQLEGLGDRY--------PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162 (237)
T ss_pred HhHHHhcCC---CHHHHHHHHHHHHHHcCCHhHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 886543321 1122235568899999998878877 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+.+.|++++.+.++|||++||++ .++.++||++++|++|+++..|+.+++.
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 163 AKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 99999999999998544489999999997 5788999999999999999999988654
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=331.32 Aligned_cols=202 Identities=23% Similarity=0.399 Sum_probs=168.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++ |...++|+|+++|+++.. .+++.+||+||++.+++.
T Consensus 29 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~- 107 (259)
T PRK14274 29 KNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ- 107 (259)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-
Confidence 48999999999999999999999999999999987 321137999999998742 245789999999888875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.+....... ....+..+++.++++.+++.+ ..++. +.+||||||||++|||+|+.+|++|
T Consensus 108 tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--------~~~LS~Gq~qrv~laral~~~p~ll 177 (259)
T PRK14274 108 SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--------ALSLSGGQQQRLCIARALATNPDVL 177 (259)
T ss_pred CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhhhCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999886543211 111223345678888988853 34555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ +.|+|++||++ .++.++||++++|++|+++..|++++++
T Consensus 178 llDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 178 LMDEPTSALDPVSTRKIEELILKL-KE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHH-hc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999 44 68999999997 4788899999999999999999998764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=331.74 Aligned_cols=202 Identities=24% Similarity=0.373 Sum_probs=168.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++ |...++|+|.++|+++.. .+++.++|+||++.+++ .
T Consensus 30 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 108 (260)
T PRK10744 30 KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-M 108 (260)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-C
Confidence 47999999999999999999999999999999986 211147999999998742 24678999999988887 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.+....... .......+++.++++.+++. +..++. +.+||||||||++|||||+.+|++|
T Consensus 109 tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~ll 178 (260)
T PRK10744 109 SIYDNIAFGVRLFEK--LSRAEMDERVEWALTKAALWNEVKDKLHQS--------GYSLSGGQQQRLCIARGIAIRPEVL 178 (260)
T ss_pred cHHHHHhhhHhhcCC--CCHHHHHHHHHHHHHHcCCChhhHHHHhcC--------CCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 999999886543211 11222334577899999874 334555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ +.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 179 lLDEPt~~LD~~~~~~l~~~L~~~-~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 179 LLDEPCSALDPISTGRIEELITEL-KQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44 68999999997 4788899999999999999999988654
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=332.93 Aligned_cols=203 Identities=23% Similarity=0.393 Sum_probs=168.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||+|++|++++|+|||||||||||++|+|+++|. ...+|+|+++|+++.. .+++.++|++|++.+++.
T Consensus 36 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~- 114 (267)
T PRK14235 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK- 114 (267)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-
Confidence 5899999999999999999999999999999998741 0147999999998742 246789999999888875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.++...+... .......+.+.++++.+++.+ ..++. +..|||||||||+|||||+.+|++|
T Consensus 115 tv~enl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgGq~qrv~laral~~~p~ll 185 (267)
T PRK14235 115 SIYENVAYGPRIHGLA-RSKAELDEIVETSLRKAGLWEEVKDRLHEP--------GTGLSGGQQQRLCIARAIAVSPEVI 185 (267)
T ss_pred cHHHHHHHHHHhcccc-cchHHHHHHHHHHHHHcCCchhhhHHhhCC--------cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999865432210 011222345678999999964 34455 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ .+ +.|||++||++ .++..+||++++|++|+++..|++++++
T Consensus 186 lLDEPt~~LD~~~~~~l~~~L~~l-~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 186 LMDEPCSALDPIATAKVEELIDEL-RQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHH-hc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44 68999999997 5788899999999999999999988654
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=309.75 Aligned_cols=192 Identities=30% Similarity=0.434 Sum_probs=172.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cc-cccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KF-RSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~-~~~ig~v~Q~~~~~~~l 75 (290)
.+|++.+++||.++|+|||||||||||-+++|+..|+ +|+|.+.|+++.. .+ .+++|||||...+.|+|
T Consensus 27 ~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l 103 (228)
T COG4181 27 KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL 103 (228)
T ss_pred ecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccc
Confidence 4799999999999999999999999999999999995 8999999999854 23 47899999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|..||++..+.++... .......+.++|+.+||.+....+ |.+|||||+|||+|||||+..|++||.||
T Consensus 104 tAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~Hy--------P~qLSGGEQQRVAiARAfa~~P~vLfADE 172 (228)
T COG4181 104 TALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTHY--------PAQLSGGEQQRVALARAFAGRPDVLFADE 172 (228)
T ss_pred hhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccccccC--------ccccCchHHHHHHHHHHhcCCCCEEeccC
Confidence 9999999988876532 122234567899999999999888 66799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
||-+||..+-.+|.++|..++++.|+|.|+||||+ .+...|+|++-|.+|+++.
T Consensus 173 PTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 173 PTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred CCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 99999999999999999999889999999999997 4788999999999999874
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=328.95 Aligned_cols=203 Identities=22% Similarity=0.365 Sum_probs=169.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++ |...++|+|+++|+++.. .+++.++|+||++.+++.+
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (252)
T PRK14256 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAM 100 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcC
Confidence 58999999999999999999999999999999986 321137999999998742 2467899999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|+.||+.+....... .......+++.++++.+++.. ..++. +..||||||||++|||||+.+|++|
T Consensus 101 tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrl~laral~~~p~ll 170 (252)
T PRK14256 101 SIYDNVIAGYKLNGR--VNRSEADEIVESSLKRVALWDEVKDRLKSN--------AMELSGGQQQRLCIARTIAVKPEVI 170 (252)
T ss_pred cHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhCC--------cCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999876543211 111222345678899999854 33444 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ + +.|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 171 llDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 171 LMDEPASALDPISTLKIEELIEELK-E-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHH-h-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999994 4 58999999997 5788999999999999999999988653
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=330.81 Aligned_cols=198 Identities=28% Similarity=0.421 Sum_probs=170.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|++++ +|+|.++|+++.. .+++.++|+||++.+++.+|+++
T Consensus 13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 13 GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 589999999999999999999999999999999854 6999999998753 24467999999988888899999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh-------CCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT-------DPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~-------~p~lll 152 (290)
|+.+...... ......+.+.++++.+++.+..++. +..||||||||++||+||+. +|++||
T Consensus 89 nl~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~~~~~~p~p~lll 156 (248)
T PRK03695 89 YLTLHQPDKT----RTEAVASALNEVAEALGLDDKLGRS--------VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLL 156 (248)
T ss_pred HHHhcCccCC----CcHHHHHHHHHHHHHcCCHhHhcCC--------cccCCHHHHHHHHHHHHHhccccccCCCCCEEE
Confidence 9987632111 1122235678899999998877877 45599999999999999998 779999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..+.++|++++ ++|.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 157 lDEPt~~LD~~~~~~l~~~L~~~~-~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 157 LDEPMNSLDVAQQAALDRLLSELC-QQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999995 4589999999997 4788999999999999999999987653
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=330.68 Aligned_cols=203 Identities=22% Similarity=0.330 Sum_probs=169.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+++|. ..++|+|.++|+++.. .+++.++|++|++.+++.+
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (258)
T PRK14241 21 EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTM 100 (258)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCC
Confidence 4799999999999999999999999999999998741 0137999999998731 2467899999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++...+.. .......+.+.++++.+++. +..++. +.+|||||||||+|||||+.+|++|
T Consensus 101 tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 170 (258)
T PRK14241 101 SIRDNVVAGLKLNGV--RNKKDLDELVEKSLRGANLWNEVKDRLDKP--------GGGLSGGQQQRLCIARAIAVEPDVL 170 (258)
T ss_pred cHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999886543221 11222334577889999884 344555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe------CCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA------DSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ ++ +.|||++||++ .++.++||++++|+ +|++++.|++++++
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~-~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 171 LMDEPCSALDPISTLAIEDLINEL-KQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 999999999999999999999999 44 58999999997 57888999999997 79999999998664
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=330.53 Aligned_cols=202 Identities=25% Similarity=0.359 Sum_probs=169.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe-----cCc----c----ccccEEEEccCC-
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP-----VEG----K----FRSACGFMYQHD- 69 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~-----~~~----~----~~~~ig~v~Q~~- 69 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++ +.. . .++.++|+||++
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~ 99 (258)
T PRK11701 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPR 99 (258)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcc
Confidence 4899999999999999999999999999999999984 7999999998 542 1 245799999996
Q ss_pred -CCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC
Q psy2520 70 -LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 147 (290)
Q Consensus 70 -~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 147 (290)
.+++.+|+.+|+.+........ ........+.++++.+++.+ ..++. +..|||||||||+|||||+.+
T Consensus 100 ~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LS~Gq~qrl~laral~~~ 169 (258)
T PRK11701 100 DGLRMQVSAGGNIGERLMAVGAR--HYGDIRATAGDWLERVEIDAARIDDL--------PTTFSGGMQQRLQIARNLVTH 169 (258)
T ss_pred cccCccccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHcCCChhHHhCC--------CccCCHHHHHHHHHHHHHhcC
Confidence 4677789999997643221110 11123345778999999964 56776 556999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 148 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 148 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 170 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999998555589999999997 5788899999999999999999988653
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=328.65 Aligned_cols=201 Identities=22% Similarity=0.385 Sum_probs=167.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcC---CCCCCCCccEEEECCEecCc------cccccEEEEccCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQR---LPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~---~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~ 74 (290)
.|+||++++||+++|+||||||||||+++|+|+ .+|. .++|+|.++|+++.. .+++.++|+||++.+++
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~- 97 (250)
T PRK14245 20 KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP- 97 (250)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCccCc-
Confidence 489999999999999999999999999999997 3441 137999999998742 24567999999988887
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCe
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~l 150 (290)
.|+.||+.++...+... ......+.+.++++.+++.+ ..++. +..||||||||++|||||+.+|++
T Consensus 98 ~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~l 167 (250)
T PRK14245 98 KSIFENVAYGLRVNGVK--DNAFIRQRVEETLKGAALWDEVKDKLKES--------AFALSGGQQQRLCIARAMAVSPSV 167 (250)
T ss_pred ccHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHcCCCcchhhhhhCC--------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 59999998865433211 11222345678899999854 34555 456999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||||+|||+.++..+.+.|+++ .+ ++|||++||++ .++.++||++++|++|++++.|++++++
T Consensus 168 llLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 168 LLMDEPASALDPISTAKVEELIHEL-KK-DYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999 44 68999999997 4788999999999999999999998764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=328.33 Aligned_cols=202 Identities=24% Similarity=0.353 Sum_probs=167.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|+++.. .+++.++|+||++.+++ +
T Consensus 22 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 100 (252)
T PRK14239 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-M 100 (252)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-C
Confidence 58999999999999999999999999999999853 521137999999998732 24668999999988887 7
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++....... ........+.++++.+++.+ ..++. +.+|||||||||+|||||+.+|++|
T Consensus 101 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 170 (252)
T PRK14239 101 SIYENVVYGLRLKGIK--DKQVLDEAVEKSLKGASIWDEVKDRLHDS--------ALGLSGGQQQRVCIARVLATSPKII 170 (252)
T ss_pred cHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHcCCchhHHHHHhcC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999865432111 11222345677888888743 34555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ .+ +.|||++||++ .++..+||++++|++|++++.|++++++
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~-~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 171 LLDEPTSALDPISAGKIEETLLGL-KD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEcCCccccCHHHHHHHHHHHHHH-hh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999998 44 58999999997 4788999999999999999999998764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=329.00 Aligned_cols=203 Identities=21% Similarity=0.408 Sum_probs=168.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+.+ |....+|+|+++|+++.. .+++.++|+||++.+++.
T Consensus 22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~- 100 (251)
T PRK14244 22 FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK- 100 (251)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-
Confidence 48999999999999999999999999999999986 211147999999998742 246789999999888875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.+....+... .........+.++++.+++.+ ..++. +..|||||||||+|||||+.+|++|
T Consensus 101 tv~~ni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~ll 171 (251)
T PRK14244 101 SIYDNVAYGPKLHGLA-KNKKKLDEIVEKSLTSVGLWEELGDRLKDS--------AFELSGGQQQRLCIARAIAVKPTML 171 (251)
T ss_pred CHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCCchhhhHhhcC--------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998864332211 111222345678899999865 23444 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ |.|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 172 LMDEPCSALDPVATNVIENLIQEL-KK-NFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999998 44 79999999997 4788899999999999999999988654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=363.49 Aligned_cols=204 Identities=23% Similarity=0.302 Sum_probs=173.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.||||++++||+++|+||||||||||+|+|+|+++|. .++|+|+++|+++.. ..++.+||+||++.+++.+||+
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 100 (506)
T PRK13549 22 DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVL 100 (506)
T ss_pred cceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHH
Confidence 5899999999999999999999999999999999861 137999999998853 1346799999999899999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.++...+...........+++.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+
T Consensus 101 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 172 (506)
T PRK13549 101 ENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP--------VGNLGLGQQQLVEIAKALNKQARLLILDEPTA 172 (506)
T ss_pred HHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 9998865322100011222335678899999998888888 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
+||+.++..++++|++++ +.|.|||++||++ .++..+||++++|++|++++.|+++++
T Consensus 173 ~LD~~~~~~l~~~l~~l~-~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 173 SLTESETAVLLDIIRDLK-AHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999995 4589999999997 578889999999999999999987654
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=328.34 Aligned_cols=202 Identities=24% Similarity=0.347 Sum_probs=168.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC-CCccEEEECCEecCc-c-ccccEEEEccCCC--CCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC-IIDGDIRVNGKPVEG-K-FRSACGFMYQHDL--FSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~-~~~G~I~i~G~~~~~-~-~~~~ig~v~Q~~~--~~~~lTv~ 78 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|.. .++|+|+++|+++.. . .++.++|+||++. +.+.+|+.
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~ 99 (254)
T PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMH 99 (254)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHH
Confidence 48999999999999999999999999999999998721 037999999998753 2 2457999999974 45668999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC---ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
+++.+........ . ....+.++++.+++.+ ..++. +..|||||||||+|||||+.+|++|||||
T Consensus 100 ~~~~~~~~~~~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~lLlLDE 166 (254)
T PRK10418 100 THARETCLALGKP---A--DDATLTAALEAVGLENAARVLKLY--------PFEMSGGMLQRMMIALALLCEAPFIIADE 166 (254)
T ss_pred HHHHHHHHHcCCC---h--HHHHHHHHHHHcCCCChhhhhhcC--------CcccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9987654322111 1 1245778999999976 35666 45699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+|||+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 167 Pt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 167 PTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred CCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999998655589999999997 4778899999999999999999988654
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=334.99 Aligned_cols=207 Identities=27% Similarity=0.349 Sum_probs=171.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC-----CCccEEEECCEecCc----cccccEEEEccCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC-----IIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~-----~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~ 74 (290)
.|+||++++|++++|+|||||||||||++|+|+++|.. ..+|+|.++|+++.. .+++.++|+||++.+++.
T Consensus 18 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~ 97 (272)
T PRK13547 18 RDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFA 97 (272)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCC
Confidence 48999999999999999999999999999999998830 117999999998753 245679999999776667
Q ss_pred CCHHHHHHHHHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH--------
Q psy2520 75 LTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-------- 145 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~-------- 145 (290)
+||.||+.+....... .........+.+.++++.+++.+..++. +..|||||||||+|||||+
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~laral~~~~~~~~~ 169 (272)
T PRK13547 98 FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD--------VTTLSGGELARVQFARVLAQLWPPHDA 169 (272)
T ss_pred CcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC--------cccCCHHHHHHHHHHHHHhcccccccc
Confidence 8999999875321110 0000112234577899999998887877 4569999999999999999
Q ss_pred -hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 146 -TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 146 -~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 170 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 170 AQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred CCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 599999999999999999999999999999554589999999997 4788899999999999999999988664
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=327.49 Aligned_cols=200 Identities=29% Similarity=0.422 Sum_probs=163.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.++|++|++.+++ .||+|
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 94 (234)
T cd03251 19 RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAE 94 (234)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHH
Confidence 4899999999999999999999999999999999984 8999999998743 34677999999988876 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.++.................+.++++.+ ++....++. +..||||||||++|||||+.+|+++||||||
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 166 (234)
T cd03251 95 NIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGER--------GVKLSGGQRQRIAIARALLKDPPILILDEAT 166 (234)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccC--------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 998753211100111111111245566665 566666666 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+.+.|+++ .+ +.|||++||++ .++. .||++++|++|+++..|+++++.
T Consensus 167 ~~LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~-~~~~-~~d~v~~l~~G~i~~~~~~~~~~ 224 (234)
T cd03251 167 SALDTESERLVQAALERL-MK-NRTTFVIAHRL-STIE-NADRIVVLEDGKIVERGTHEELL 224 (234)
T ss_pred ccCCHHHHHHHHHHHHHh-cC-CCEEEEEecCH-HHHh-hCCEEEEecCCeEeeeCCHHHHH
Confidence 999999999999999998 44 78999999997 4665 49999999999999999988654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=327.92 Aligned_cols=202 Identities=22% Similarity=0.360 Sum_probs=168.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|+++.. ..++.++|+||++.+++ +
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~ 99 (251)
T PRK14270 21 NDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-M 99 (251)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-C
Confidence 5899999999999999999999999999999998751 0147999999998742 24567999999988887 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|++||+.|........ .......++.++++.+++. +..++. +.+||||||||++|||||+.+|++|
T Consensus 100 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 169 (251)
T PRK14270 100 SIYDNVAYGPRIHGIK--DKKELDKIVEWALKKAALWDEVKDDLKKS--------ALKLSGGQQQRLCIARTIAVKPDVI 169 (251)
T ss_pred cHHHHHHhHHHhcCCC--cHHHHHHHHHHHHHHcCCchhhhhHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999865432210 1122234567889999874 234555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ + +.|||++||++ .++.++||++++|++|+++..|++++++
T Consensus 170 llDEP~~~LD~~~~~~l~~~L~~~~-~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 170 LMDEPTSALDPISTLKIEDLMVELK-K-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHH-h-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 9999999999999999999999984 4 58999999997 5788999999999999999999998764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=326.74 Aligned_cols=202 Identities=23% Similarity=0.381 Sum_probs=168.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPD--DCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~--~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+.++ ...++|+|.++|+++.. .+++.++|++|++.+++ +
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 98 (250)
T PRK14240 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-M 98 (250)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-c
Confidence 489999999999999999999999999999998763 11137999999998752 24678999999988887 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|++||+.+........ ......+.+.++++.+++. +..++. +.+||||||||++|||||+.+|++|
T Consensus 99 t~~~ni~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 168 (250)
T PRK14240 99 SIYDNVAYGPRTHGIK--DKKKLDEIVEKSLKGAALWDEVKDRLKKS--------ALGLSGGQQQRLCIARALAVEPEVL 168 (250)
T ss_pred cHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCCchhhHHHHhcC--------CCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999865432211 1122334567788888874 234555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ +.|||++||++ ..+..+||++++|++|+++..|+++++.
T Consensus 169 llDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 169 LMDEPTSALDPISTLKIEELIQEL-KK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44 78999999997 4788899999999999999999988653
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=367.56 Aligned_cols=202 Identities=22% Similarity=0.328 Sum_probs=175.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
.||||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.|+||||++ .+++.
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 5899999999999999999999999999999999984 7999999998743 1456899999996 58899
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+||.+|+.+....+.. .......+++.++++.+||. +..++. +.+|||||||||+|||||+.+|++|||
T Consensus 418 ~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~L~~~gL~~~~~~~~--------~~~LSgGqrQRv~iAraL~~~p~llll 487 (623)
T PRK10261 418 QTVGDSIMEPLRVHGL--LPGKAAAARVAWLLERVGLLPEHAWRY--------PHEFSGGQRQRICIARALALNPKVIIA 487 (623)
T ss_pred CCHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCHHHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999986543221 01223345678999999996 567877 556999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||++||+.++.+++++|++++++.|.|||++|||+ ..+..+||+|++|++|++++.|++++++
T Consensus 488 DEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 488 DEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999655689999999997 5788999999999999999999998775
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=323.51 Aligned_cols=191 Identities=26% Similarity=0.458 Sum_probs=166.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.++||++++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.++|+||++.+++.+|
T Consensus 22 ~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (220)
T TIGR02982 22 FDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT 98 (220)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCC
Confidence 4899999999999999999999999999999999984 8999999998742 24578999999999999899
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+.||+.++...... ....+..+.+.++++.+++.+..++. +..||+|||||++|||+|+.+|+++|||||
T Consensus 99 ~~~n~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 99 ARQNVQMALELQPN--LSYQEARERARAMLEAVGLGDHLDYY--------PHNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred HHHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCChhhhhcC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999987543311 12233345678999999998888887 556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
|+|||+.++..+.+.|++++++.++|||++||++ . +.++||++++|++|++
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHMEDGKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEEECCEE
Confidence 9999999999999999998554689999999997 3 5689999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=326.43 Aligned_cols=203 Identities=25% Similarity=0.368 Sum_probs=168.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|+++.. .+++.++|++|++.+++.+
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (252)
T PRK14272 21 KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTM 100 (252)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCC
Confidence 58999999999999999999999999999999987631 137999999998742 2456799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|+.||+.++....... ......+.+.++++.+++. +..++. +..||||||||++|||||+.+|++|
T Consensus 101 t~~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 170 (252)
T PRK14272 101 SVFDNVVAGLKLAGIR--DRDHLMEVAERSLRGAALWDEVKDRLKTP--------ATGLSGGQQQRLCIARALAVEPEIL 170 (252)
T ss_pred CHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCcchhhhhhhcCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998765332110 1122234456667777653 334555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ ++|||++||++ .++..+||++++|++|++++.|++++++
T Consensus 171 llDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 171 LMDEPTSALDPASTARIEDLMTDL-KK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999998 44 68999999997 4788899999999999999999998764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=361.34 Aligned_cols=202 Identities=24% Similarity=0.321 Sum_probs=173.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++.+|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. . .++.++|+||++.+++.+||+
T Consensus 21 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (501)
T PRK10762 21 SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIA 97 (501)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHH
Confidence 5899999999999999999999999999999999984 8999999998743 1 246799999999999999999
Q ss_pred HHHHHHHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
||+.++...... .........+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||
T Consensus 98 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~lllLDEPt 169 (501)
T PRK10762 98 ENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL--------VGELSIGEQQMVEIAKVLSFESKVIIMDEPT 169 (501)
T ss_pred HHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999986432110 0111122334578899999999888888 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
++||+.++..++++|++++ +.|.|||++|||+ .++..+||++++|++|+++..|+++++
T Consensus 170 ~~LD~~~~~~l~~~l~~l~-~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 170 DALTDTETESLFRVIRELK-SQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred CCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999995 4589999999997 578899999999999999999887653
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=326.18 Aligned_cols=202 Identities=23% Similarity=0.422 Sum_probs=168.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPD--DCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~--~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+++| ....+|+|.++|.++.. .+++.++|+||++.+++ +
T Consensus 20 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 98 (250)
T PRK14262 20 KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-M 98 (250)
T ss_pred eeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-c
Confidence 589999999999999999999999999999999874 11147999999998742 24678999999988887 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++....... ......+.+.++++.+++.+ ..++. +.+||||||||++|||||+.+|++|
T Consensus 99 tv~e~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~qr~~la~al~~~p~ll 168 (250)
T PRK14262 99 SIYDNVAFGPRIHGVK--SKHKLDRIVEESLKKAALWDEVKSELNKP--------GTRLSGGQQQRLCIARALAVEPEVI 168 (250)
T ss_pred cHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHcCCCchhHHHHhCC--------hhhcCHHHHHHHHHHHHHhCCCCEE
Confidence 9999999865432111 11222344678888888854 24555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ ++|||++||++ ..+..+||++++|++|+++..|+++++.
T Consensus 169 llDEP~~~LD~~~~~~l~~~l~~~-~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 169 LLDEPTSALDPIATQRIEKLLEEL-SE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEeCCccccCHHHHHHHHHHHHHH-hc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999998 44 68999999997 4688999999999999999999988654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=354.44 Aligned_cols=202 Identities=26% Similarity=0.392 Sum_probs=179.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC--c----cccccEEEEccCC--CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE--G----KFRSACGFMYQHD--LFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~--~----~~~~~ig~v~Q~~--~~~~~l 75 (290)
.||||++.+||++||+|+||||||||.++|+|+++|+ +|.|.++|.++. . ..++.+-++||++ .+.|.+
T Consensus 308 ~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~ 384 (539)
T COG1123 308 DDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRM 384 (539)
T ss_pred eeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCcccccCccc
Confidence 5899999999999999999999999999999999994 799999998732 1 2567899999986 678999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
||.+++......+.... ..++.+++.++++.++|.. +.+++ +.+|||||||||+|||||+.+|++|++|
T Consensus 385 tV~~~i~epL~~~~~~~--~~~~~~rv~~ll~~VgL~~~~l~ry--------P~elSGGQrQRvaIARALa~~P~lli~D 454 (539)
T COG1123 385 TVGDILAEPLRIHGGGS--GAERRARVAELLELVGLPPEFLDRY--------PHELSGGQRQRVAIARALALEPKLLILD 454 (539)
T ss_pred cHHHHHHhHHhhhcccc--hHHHHHHHHHHHHHcCCCHHHHhcC--------chhcCcchhHHHHHHHHHhcCCCEEEec
Confidence 99999998776544322 3455567899999999976 68888 5669999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||.||+..+.+++++|+++.++.|.|.|+||||+ ..+..+||||++|++|+++..|+.++++
T Consensus 455 Ep~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 455 EPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999878899999999997 5899999999999999999999888775
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=327.05 Aligned_cols=200 Identities=27% Similarity=0.382 Sum_probs=159.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. .+++.++|++|++.+++ .||+|
T Consensus 20 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 95 (238)
T cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAE 95 (238)
T ss_pred eceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHH
Confidence 5899999999999999999999999999999999984 8999999998743 23567999999988776 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.++.................+.++++.+ ++....++. +.+|||||||||+|||||+.+|++|||||||
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEP~ 167 (238)
T cd03249 96 NIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGER--------GSQLSGGQKQRIAIARALLRNPKILLLDEAT 167 (238)
T ss_pred HhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccC--------CccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 998753221100000000001123334433 444445555 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+.+.|+++ . +|+|||++||++ .++. +||++++|++|++++.|+.+++.
T Consensus 168 ~gLD~~~~~~l~~~l~~~-~-~g~~vi~~sh~~-~~~~-~~d~v~~l~~G~i~~~~~~~~~~ 225 (238)
T cd03249 168 SALDAESEKLVQEALDRA-M-KGRTTIVIAHRL-STIR-NADLIAVLQNGQVVEQGTHDELM 225 (238)
T ss_pred ccCCHHHHHHHHHHHHHh-c-CCCEEEEEeCCH-HHHh-hCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999998 4 589999999997 4564 89999999999999999887654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=352.24 Aligned_cols=206 Identities=25% Similarity=0.416 Sum_probs=181.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-CCCccEEEECCEecCc-------c-ccccEEEEccCC--CCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD-CIIDGDIRVNGKPVEG-------K-FRSACGFMYQHD--LFS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~-~~~~G~I~i~G~~~~~-------~-~~~~ig~v~Q~~--~~~ 72 (290)
.||||++.+||++||+|.|||||||+.++|.|++++. ...+|+|.++|+++.. . ..+.|+|+||++ .+-
T Consensus 26 ~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~sln 105 (539)
T COG1123 26 RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLN 105 (539)
T ss_pred ecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcC
Confidence 5899999999999999999999999999999999876 3458999999997743 1 336799999996 566
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCc--ccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCe
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT--RIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~l 150 (290)
|-+||.+.+.-....+... ...+..+++.++|+.+||.+...+ + +.+|||||||||.||+||+.+|++
T Consensus 106 P~~tIg~Qi~E~~~~h~~~--~~~ea~~~a~elL~~Vgl~~~~~~~~y--------PheLSGG~rQRv~iAmALa~~P~L 175 (539)
T COG1123 106 PVMTIGDQIREALRLHGKG--SRAEARKRAVELLEQVGLPDPERRDRY--------PHQLSGGMRQRVMIAMALALKPKL 175 (539)
T ss_pred chhhHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHcCCCChhhhccC--------CcccCchHHHHHHHHHHHhCCCCE
Confidence 7799999998877666432 245566778999999999876654 5 667999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+||||++||+..+.+|+++|++++++.|+++|+||||+ ..+.++||||++|++|++++.|++++++.
T Consensus 176 LIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 176 LIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred EEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999888899999999998 58999999999999999999999998874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=360.63 Aligned_cols=202 Identities=23% Similarity=0.318 Sum_probs=173.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc-----ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-----FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++... .++.++|+||++.+++.+||+
T Consensus 22 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 98 (510)
T PRK09700 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVL 98 (510)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHH
Confidence 5899999999999999999999999999999999984 79999999987531 245799999999899999999
Q ss_pred HHHHHHHHhc----CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 79 EHLYFMALLK----LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 79 e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
||+.++.... ...........+++.++++.+||.+..+++ +.+|||||||||+|||||+.+|++||||
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LSgG~~qrv~ia~al~~~p~lllLD 170 (510)
T PRK09700 99 ENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK--------VANLSISHKQMLEIAKTLMLDAKVIIMD 170 (510)
T ss_pred HHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9998753211 000011122345678899999999888888 4559999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||+|||+.++..++++|+++++ .|.|||++||++ .++..+||++++|++|++++.|+++++
T Consensus 171 EPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 171 EPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchhhC
Confidence 99999999999999999999954 589999999997 578889999999999999999988764
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=308.76 Aligned_cols=197 Identities=29% Similarity=0.466 Sum_probs=178.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+|+++.+||.++++||||||||||||+++|+.+|. .|+|.+||++++.- -..-|.|||++.++|.+||.+|++|
T Consensus 22 e~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP-gaergvVFQ~~~LlPWl~~~dNvaf 97 (259)
T COG4525 22 EDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP-GAERGVVFQNEALLPWLNVIDNVAF 97 (259)
T ss_pred hccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC-CccceeEeccCccchhhHHHHHHHH
Confidence 3799999999999999999999999999999999995 79999999998641 2346899999999999999999999
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
+..++. +.+.++.+.+.+.+..+||.+..++. +.+|||||||||.|||||+.+|++|+||||+++||.-
T Consensus 98 gL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~--------i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~ 166 (259)
T COG4525 98 GLQLRG---IEKAQRREIAHQMLALVGLEGAEHKY--------IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDAL 166 (259)
T ss_pred HHHhcC---CCHHHHHHHHHHHHHHhCcccccccc--------eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHH
Confidence 998875 35567778889999999999998888 6779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe--CCeEEEEcCHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--DSRTAFIGSKD 216 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~--~G~i~~~g~~~ 216 (290)
+++++.++|-++.++.|+.++++||+. +++.-+++++++|+ .|+++..-+++
T Consensus 167 tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 167 TREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999778899999999997 57888999999998 57888776665
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=329.21 Aligned_cols=202 Identities=22% Similarity=0.384 Sum_probs=166.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|+++.. .+++.++|+||++.+++.
T Consensus 38 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~- 116 (268)
T PRK14248 38 NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK- 116 (268)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-
Confidence 47999999999999999999999999999999864 111147999999998742 245679999999888875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|++||+.+........ ........+.++++.+++. +..++. +..||||||||++|||||+.+|++|
T Consensus 117 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgGq~qrl~laral~~~p~ll 186 (268)
T PRK14248 117 SIYNNITHALKYAGER--RKSVLDEIVEESLTKAALWDEVKDRLHSS--------ALSLSGGQQQRLCIARTLAMKPAVL 186 (268)
T ss_pred cHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHcCCCcchHHHHhcC--------cccCCHHHHHHHHHHHHHhCCCCEE
Confidence 9999999865332110 1112234456788888874 334555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ ++ +.|||++||++ .++.++||++++|++|++++.|++++++
T Consensus 187 lLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 187 LLDEPASALDPISNAKIEELITEL-KE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEcCCCcccCHHHHHHHHHHHHHH-hc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44 58999999997 4788899999999999999999988654
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=317.59 Aligned_cols=184 Identities=30% Similarity=0.423 Sum_probs=158.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENE 91 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCC
Confidence 4899999999999999999999999999999999984 8999999998531 1356799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|++||+.+....... ......+.+.++++.+++.+..++. +.+||||||||++|||||+.+|++|||||
T Consensus 92 t~~e~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 92 TVEENLDLGLKYKKL---SKKEKREKKKEALEKVGLNLKLKQK--------IYELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCchhhhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999999986543211 1223345678899999998888888 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
||+|||+.++..+.+.|+++++ .|.|||++||++. ...+||++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 9999999999999999999854 5899999999973 45789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=329.48 Aligned_cols=200 Identities=23% Similarity=0.340 Sum_probs=165.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+++|.. .++|+|.++|+++.. .+++.++|+||++.+++ .
T Consensus 30 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~ 108 (269)
T PRK14259 30 KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-K 108 (269)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch-h
Confidence 48999999999999999999999999999999987310 148999999998741 24567999999988887 4
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.+........ . ...+.+.++++.+++. +..++. +.+|||||||||+|||||+.+|++|
T Consensus 109 tv~enl~~~~~~~~~~---~-~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~ll 176 (269)
T PRK14259 109 SIYENIAFGARINGYT---G-DMDELVERSLRKAAVWDECKDKLNES--------GYSLSGGQQQRLCIARTIAIEPEVI 176 (269)
T ss_pred hHHHHHhhhhhhcCCc---H-HHHHHHHHHHHHhCCcchhhhhhCCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999876432211 1 1223456778888764 334555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC-----------CeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-----------SRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~-----------G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..++++|+++ ++ +.|||++||++ .++..+||++++|++ |++++.|++++++
T Consensus 177 lLDEPt~gLD~~~~~~l~~~l~~~-~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 177 LMDEPCSALDPISTLKIEETMHEL-KK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCH-HHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence 999999999999999999999998 44 68999999997 578899999999996 6789999998764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=326.17 Aligned_cols=204 Identities=21% Similarity=0.333 Sum_probs=170.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+. ..+|+|.++|+++.. .+++.++|+||++.+++ +
T Consensus 24 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~ 102 (261)
T PRK14258 24 EGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-M 102 (261)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-c
Confidence 57999999999999999999999999999999998731 136999999998631 24677999999988888 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|++||+.+....... .......+.+.++++.+++.+ ..++. +..||||||||++|||+|+.+|++|
T Consensus 103 tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgGq~qrv~laral~~~p~vl 172 (261)
T PRK14258 103 SVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHKS--------ALDLSGGQQQRLCIARALAVKPKVL 172 (261)
T ss_pred cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999886533211 011222345678899998754 34454 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC-----CeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-----SRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~-----G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++.+.|.|||++||++ .++.++||++++|++ |+++..|++++++
T Consensus 173 lLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 173 LMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 999999999999999999999998544589999999997 578899999999999 9999999999764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=356.56 Aligned_cols=202 Identities=20% Similarity=0.266 Sum_probs=172.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||++.+++.+||+
T Consensus 15 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (491)
T PRK10982 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVM 91 (491)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHH
Confidence 5899999999999999999999999999999999984 8999999998753 2356799999998889999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.++...............+++.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 92 DNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK--------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred HHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc--------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 9998754211010011222335678899999998888888 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||+.++..+.++|++++ +.|.|||++||++ .++..+||++++|++|+++..|+++++
T Consensus 164 ~LD~~~~~~l~~~l~~l~-~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLK-ERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 999999999999999994 4589999999997 578889999999999999999987654
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-45 Score=325.41 Aligned_cols=202 Identities=25% Similarity=0.338 Sum_probs=167.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe-----cCc----c----ccccEEEEccCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP-----VEG----K----FRSACGFMYQHDL 70 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~-----~~~----~----~~~~ig~v~Q~~~ 70 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|++ +.. . .++.++|++|++.
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (253)
T TIGR02323 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR 96 (253)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcc
Confidence 4899999999999999999999999999999999984 8999999976 532 1 2356999999864
Q ss_pred --CCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC
Q psy2520 71 --FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 147 (290)
Q Consensus 71 --~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 147 (290)
+++.+|+.+|+.+........ ........+.++++.+++. ...++. +..|||||||||+|||||+.+
T Consensus 97 ~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~--------~~~LSgG~~qrv~laral~~~ 166 (253)
T TIGR02323 97 DGLRMRVSAGANIGERLMAIGAR--HYGNIRAAAHDWLEEVEIDPTRIDDL--------PRAFSGGMQQRLQIARNLVTR 166 (253)
T ss_pred cccCccccHHHHHHHHHHHhccc--chHHHHHHHHHHHHHcCCChhhhhcC--------chhcCHHHHHHHHHHHHHhcC
Confidence 456679999987643211100 0112235678899999996 466777 456999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 148 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 148 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|++|||||||+|||+.++..+.++|++++++.|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 167 p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999998555589999999997 5788899999999999999999987653
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=323.94 Aligned_cols=202 Identities=23% Similarity=0.347 Sum_probs=168.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++.+|++++|+||||||||||+++|+|+++|.. ..+|+|.++|+++.. .+++.++|+||++.+++.
T Consensus 21 ~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~- 99 (251)
T PRK14249 21 KNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK- 99 (251)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-
Confidence 58999999999999999999999999999999998841 125999999998742 246789999999988875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|+.||+.+....+... ......+.+.++++.+++.+ ..++. +..|||||||||+|||||+.+|++|
T Consensus 100 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~ll 169 (251)
T PRK14249 100 SIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNLHKS--------GLALSGGQQQRLCIARVLAIEPEVI 169 (251)
T ss_pred cHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999875432211 11122344667788888753 34455 5669999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ ++ +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 170 lLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 170 LMDEPCSALDPVSTMRIEELMQEL-KQ-NYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999998 44 78999999997 5788899999999999999999988654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=357.91 Aligned_cols=196 Identities=24% Similarity=0.387 Sum_probs=172.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. . .++.+||+||++.+++.+||+
T Consensus 28 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 104 (510)
T PRK15439 28 KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVK 104 (510)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHH
Confidence 4899999999999999999999999999999999984 8999999998753 1 235699999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.+.... . ....+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||+
T Consensus 105 e~l~~~~~~------~-~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~ 169 (510)
T PRK15439 105 ENILFGLPK------R-QASMQKMKQLLAALGCQLDLDSS--------AGSLEVADRQIVEILRGLMRDSRILILDEPTA 169 (510)
T ss_pred HHhhccccc------c-hHHHHHHHHHHHHcCCCccccCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 999885321 1 12234577899999998888888 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+.++|++++ +.|.|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 170 ~LD~~~~~~l~~~l~~~~-~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 170 SLTPAETERLFSRIRELL-AQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 999999999999999995 4589999999997 5788999999999999999999987653
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=325.45 Aligned_cols=202 Identities=21% Similarity=0.350 Sum_probs=168.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCC--CccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCI--IDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~--~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|+||||||||+++|+|+++|... ++|+|.++|+++.. .+++.++|+||++.+++ +
T Consensus 24 ~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~ 102 (259)
T PRK14260 24 EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-M 102 (259)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-c
Confidence 589999999999999999999999999999999885311 37999999998742 24567999999988887 8
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++...... .......+.+.++++.+++. +..++. +..|||||||||+|||||+.+|++|
T Consensus 103 tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 172 (259)
T PRK14260 103 SIYENVAYGVRISAK--LPQADLDEIVESALKGAALWQEVKDKLNKS--------ALGLSGGQQQRLCIARALAIKPKVL 172 (259)
T ss_pred cHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhhHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999886543211 11122234567788888874 345555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe-----CCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-----DSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~-----~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ ++|||++||++ .++.++||++++|+ +|+++..|++++++
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 173 LMDEPCSALDPIATMKVEELIHSL-RS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 999999999999999999999998 44 58999999997 57889999999998 59999999999764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=327.90 Aligned_cols=202 Identities=25% Similarity=0.356 Sum_probs=171.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
.|+||++++|++++|+||||||||||+++|+|+.+|+ +|+|.++|.++.. .+++.++|++|++ .+++.
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 105 (268)
T PRK10419 29 NNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPR 105 (268)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCC
Confidence 5899999999999999999999999999999999884 8999999998743 2456899999997 46678
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
.|+.+++.+...... ..........+.++++.+++. ...++. +..||||||||++|||||+.+|++|||
T Consensus 106 ~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~~LS~Ge~qrl~laral~~~p~lllL 175 (268)
T PRK10419 106 KTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKR--------PPQLSGGQLQRVCLARALAVEPKLLIL 175 (268)
T ss_pred CCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCC--------CccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 899999876543111 111223344678899999996 466776 456999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||+|||+.++..+.+.|++++++.|.|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 176 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 176 DEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 9999999999999999999999555589999999997 5788899999999999999999988754
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=322.50 Aligned_cols=200 Identities=27% Similarity=0.388 Sum_probs=158.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++.. .+++.++|+||++.+++. ||+|
T Consensus 20 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~ 95 (229)
T cd03254 20 KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIME 95 (229)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHH
Confidence 5899999999999999999999999999999999984 7999999998753 346779999999888775 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.+..................+.++++.+ ++....++. +.+|||||||||+|||||+.+|++|||||||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~LS~G~~~rv~la~al~~~p~llllDEP~ 167 (229)
T cd03254 96 NIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGEN--------GGNLSQGERQLLAIARAMLRDPKILILDEAT 167 (229)
T ss_pred HHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcC--------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 998753211100000000001123334433 444444444 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+++.|+++ ++ |.|||++||++. ++ ..||++++|++|++++.|+.+++.
T Consensus 168 ~~LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 168 SNIDTETEKLIQEALEKL-MK-GRTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred ccCCHHHHHHHHHHHHHh-cC-CCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999998 44 899999999974 55 469999999999999999887654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=323.71 Aligned_cols=202 Identities=23% Similarity=0.376 Sum_probs=167.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++ |....+|+|.++|+++.. .+++.++|++|++.+++ .
T Consensus 21 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 99 (251)
T PRK14251 21 HGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-F 99 (251)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-C
Confidence 47999999999999999999999999999999986 211147999999998742 24667999999988886 7
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++....... ......+.+.++++.+++. ...++. +.+||||||||++|||||+.+|+++
T Consensus 100 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~qr~~laral~~~p~ll 169 (251)
T PRK14251 100 SVYDNVAYGLKIAGVK--DKELIDQRVEESLKQAAIWKETKDNLDRN--------AQAFSGGQQQRICIARALAVRPKVV 169 (251)
T ss_pred cHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCCcchHHHhccC--------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998765332111 1112234567888888884 234555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ ++ +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 170 llDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 170 LLDEPTSALDPISSSEIEETLMEL-KH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EecCCCccCCHHHHHHHHHHHHHH-Hc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999998 44 68999999997 4788899999999999999999988653
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=308.52 Aligned_cols=201 Identities=26% Similarity=0.438 Sum_probs=178.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----------------cccccEEEEc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----------------KFRSACGFMY 66 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----------------~~~~~ig~v~ 66 (290)
.+||+.++.|+++.|||.|||||||+|+||+=+..|+ .|+|.++|+.+.- .+|.+.|+||
T Consensus 23 KGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVF 99 (256)
T COG4598 23 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVF 99 (256)
T ss_pred cceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhh
Confidence 4799999999999999999999999999999999995 7999999998731 2567799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 67 Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
|+.+++..|||.||+.-+..--+ ..++.+..++++.+|.++|+.+..+.+ +..|||||+||++|||||+.
T Consensus 100 Q~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~Y--------P~~LSGGQQQR~aIARaLam 169 (256)
T COG4598 100 QHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAY--------PAHLSGGQQQRVAIARALAM 169 (256)
T ss_pred hhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcC--------ccccCchHHHHHHHHHHHhc
Confidence 99999999999999986542211 134556677889999999999999988 66799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|+++|+|||||+|||.-.-++++.+++++ +.|+|.+++||.+ .++.+.+.+|++|++|.+-..|+|++++
T Consensus 170 eP~vmLFDEPTSALDPElVgEVLkv~~~LA-eEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 170 EPEVMLFDEPTSALDPELVGEVLKVMQDLA-EEGRTMVVVTHEM-GFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred CCceEeecCCcccCCHHHHHHHHHHHHHHH-HhCCeEEEEeeeh-hHHHhhhhheEEeecceecccCChHHHh
Confidence 999999999999999999999999999995 5699999999997 5788899999999999999999999765
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=337.58 Aligned_cols=187 Identities=25% Similarity=0.368 Sum_probs=164.5
Q ss_pred EECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHHHHHHhcCchhhhH
Q psy2520 18 IMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKA 95 (290)
Q Consensus 18 IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~ 95 (290)
|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.++|+||++.+++.+||+||+.|+...+.. ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~---~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKV---PR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCC---CH
Confidence 68999999999999999999984 8999999998854 2456799999999999999999999997643321 22
Q ss_pred HHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2520 96 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175 (290)
Q Consensus 96 ~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 175 (290)
....+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRK--------PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCC--------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 23345678899999999888888 5569999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 176 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 176 ~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+++.|.|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 147 ~~~~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 147 QEQLGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred HHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 655689999999997 5788999999999999999999998775
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-45 Score=320.80 Aligned_cols=197 Identities=28% Similarity=0.390 Sum_probs=164.4
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCC--CCCCHHHHHHHHH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS--PSLTVYEHLYFMA 85 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~--~~lTv~e~l~~~~ 85 (290)
|++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .++.++|+||++.++ ..+|+.+|+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 568999999999999999999999999999984 7999999988643 456799999997664 3479999998753
Q ss_pred HhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHH
Q psy2520 86 LLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 86 ~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~ 164 (290)
..... ...........+.++++.+++.+..++. +.+|||||||||+|||||+.+|+++||||||+|||+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~ 148 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRP--------VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 21100 0001112234578899999998888877 45599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+..+.+.|++++ ++|.|+|++||++ .++.++||+++++ +|+++..|+++++.
T Consensus 149 ~~~l~~~l~~~~-~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 149 QELLTELFIELA-GAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHHHH-HcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999999995 4589999999997 4788999999999 89999999988653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-46 Score=327.91 Aligned_cols=197 Identities=24% Similarity=0.412 Sum_probs=176.8
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCC
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPS 74 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~ 74 (290)
..+++|..+.-.++||.|+||||||||+|+|+|+.+|+ +|.|.+||+-+.. .-+++|||||||-.+||+
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH 90 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH 90 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccc
Confidence 34677888775799999999999999999999999995 8999999987743 146789999999999999
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
+||+.|+.|+.... ....++++.+.+|+.+..++. |..|||||||||+|+|||+..|++||||
T Consensus 91 ~tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~--------P~~LSGGEkQRVAIGRALLt~P~LLLmD 153 (352)
T COG4148 91 YTVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRY--------PGTLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred eEEecchhhhhccc---------chHhHHHHHHHhCcHHHHhhC--------CCccCcchhhHHHHHHHHhcCCCeeeec
Confidence 99999999986432 223467899999999999999 5669999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||.++||..-+.+++-.|.++..+-+..|++|||.+ +|+.++||+|++|++|++.+.|+.+++..
T Consensus 154 EPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 154 EPLASLDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred CchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999999999999877889999999997 68999999999999999999999997753
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=325.85 Aligned_cols=202 Identities=22% Similarity=0.300 Sum_probs=168.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++.+||+++|+|||||||||||++|+|+++|. ..++|+|.++|+++.. .+++.++|+||++.+++ .
T Consensus 37 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 115 (267)
T PRK14237 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-K 115 (267)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-c
Confidence 4799999999999999999999999999999998641 1148999999998742 24668999999988887 5
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++...... .......+.+.++++.+++.+ ..++. +.+||||||||++|||||+.+|++|
T Consensus 116 tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--------~~~LS~G~~qrl~laral~~~p~ll 185 (267)
T PRK14237 116 SIYENITFALERAGV--KDKKVLDEIVETSLKQAALWDQVKDDLHKS--------ALTLSGGQQQRLCIARAIAVKPDIL 185 (267)
T ss_pred cHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCCchhhhhhcCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999986543211 112223355778899998853 34555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ ++ +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 186 lLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 186 LMDEPASALDPISTMQLEETMFEL-KK-NYTIIIVTHNM-QQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH-hc-CCEEEEEecCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999 44 68999999997 4788999999999999999999998653
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=322.51 Aligned_cols=201 Identities=22% Similarity=0.334 Sum_probs=167.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc-----cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|.++.. .+++.++|+||++.+++ .|
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 98 (249)
T PRK14253 20 KSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MS 98 (249)
T ss_pred ecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-cc
Confidence 58999999999999999999999999999999988620 137999999998742 34678999999988887 89
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|.||+.++...... .......+++.++++.+++.+ ..++. +.+|||||||||+|||||+.+|++||
T Consensus 99 v~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~lll 168 (249)
T PRK14253 99 IYENVAYGLRAQGI--KDKKVLDEVVERSLRGAALWDEVKDRLKSH--------AFGLSGGQQQRLCIARTIAMEPDVIL 168 (249)
T ss_pred HHHHHHhHHHhcCC--CchHHHHHHHHHHHHHcCCchhhhHHhhcC--------cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999886433211 111222345667888888753 33444 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||||+|||+.++..+.+.|++++ + +.|||++||++ .++..+||++++|++|+++..|+++++
T Consensus 169 lDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 169 MDEPTSALDPIATHKIEELMEELK-K-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999994 4 58999999997 578889999999999999999998765
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=329.57 Aligned_cols=202 Identities=24% Similarity=0.381 Sum_probs=166.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+.+ |....+|+|.++|+++.. .+++.++|++|++.+++.
T Consensus 56 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~- 134 (286)
T PRK14275 56 KKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK- 134 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-
Confidence 48999999999999999999999999999999864 310137999999998742 246789999999888875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.+........ ......+.+.++++.+++. +..++. +..|||||||||+|||||+.+|++|
T Consensus 135 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LSgGq~qrv~LAraL~~~p~ll 204 (286)
T PRK14275 135 SIFDNIAYGPRLHGIN--DKKQLEEIVEKSLRKAALWDEVSDRLDKN--------ALGLSGGQQQRLCVARTLAVEPEIL 204 (286)
T ss_pred CHHHHHHhHHHhcCCC--cHHHHHHHHHHHHHHhCCccchhhHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999865432211 1122234567788888874 344555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ . +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 205 lLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 205 LLDEPTSALDPKATAKIEDLIQELR-G-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999984 4 58999999997 5788899999999999999999988654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=321.90 Aligned_cols=202 Identities=22% Similarity=0.368 Sum_probs=165.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++.+||+++|+||||||||||+++|+|+.+ |...++|+|+++|+++.. .+++.++|++|++.+++ .
T Consensus 22 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 100 (252)
T PRK14255 22 KGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-F 100 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-C
Confidence 48999999999999999999999999999999875 421137999999998742 24578999999988887 6
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||++|+.+........ ......+.+.++++.+++. +..++. +.+||||||||++|||+|+.+|++|
T Consensus 101 tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~ll 170 (252)
T PRK14255 101 SIYENVIYGLRLAGVK--DKAVLDEAVETSLKQAAIWDEVKDHLHES--------ALSLSGGQQQRVCIARVLAVKPDVI 170 (252)
T ss_pred cHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCccchhhHHhcC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999865432211 1111123456677777764 334455 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|++++ + +.|||++||++ .++.++||++++|++|+++..|++.+++
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 171 LLDEPTSALDPISSTQIENMLLELR-D-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHH-h-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999994 4 47999999997 5788899999999999999999988654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=356.49 Aligned_cols=202 Identities=23% Similarity=0.402 Sum_probs=171.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
.|+||++++|++++|+||||||||||+++|+|+++ . +|+|+++|+++.. .+++.+||+||++ .+++.
T Consensus 303 ~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~ 378 (529)
T PRK15134 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR 378 (529)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence 57999999999999999999999999999999985 3 7999999998743 1356799999986 47888
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+||.||+.++...+.. ........+++.++++.++|. +..+++ +.+|||||||||+|||||+.+|++|||
T Consensus 379 ~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 379 LNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY--------PAEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred ccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC--------CccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 9999999986543211 011222335678899999997 467777 556999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||+|||+.++..++++|++++++.|.|||++|||+ .++..+||++++|++|+++..|++++++
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999655589999999997 5788999999999999999999988664
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=326.51 Aligned_cols=202 Identities=21% Similarity=0.345 Sum_probs=165.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|+||||||||+++|+|+++ |...++|+|.++|+++.. .+++.++|+||++.+++ .
T Consensus 41 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 119 (271)
T PRK14238 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-K 119 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc-c
Confidence 47999999999999999999999999999999987 211148999999998742 24678999999988887 4
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC----CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL----MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.++....... ........+.++++.+++ .+..++. +..||||||||++|||+|+.+|++|
T Consensus 120 tv~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--------~~~LSgGe~qrv~laraL~~~p~ll 189 (271)
T PRK14238 120 SIYDNVTYGPKIHGIK--DKKTLDEIVEKSLRGAAIWDELKDRLHDN--------AYGLSGGQQQRLCIARCLAIEPDVI 189 (271)
T ss_pred cHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHcCCcchHHHHHhcC--------cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999865432111 111222345667777654 3334555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|+++ .+ +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 190 lLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 190 LMDEPTSALDPISTLKVEELVQEL-KK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHH-Hc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999 44 68999999997 5788899999999999999999988653
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=321.56 Aligned_cols=200 Identities=29% Similarity=0.429 Sum_probs=159.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|+++.. .+++.++|++|++.+++ .||.|
T Consensus 18 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 93 (236)
T cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGY 93 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHH
Confidence 4799999999999999999999999999999999884 8999999998753 34667999999988875 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.++.................+.+.+..+ ++....++. +..|||||||||+|||||+.+|++|||||||
T Consensus 94 nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~--------~~~LS~G~~~rl~la~aL~~~p~llllDEP~ 165 (236)
T cd03253 94 NIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGER--------GLKLSGGEKQRVAIARAILKNPPILLLDEAT 165 (236)
T ss_pred HHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC--------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 998753211100000000111123333433 344444444 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+.+.|+++ ++ |.|||++||++ .++. .||++++|++|+++..|+++++.
T Consensus 166 ~~LD~~~~~~l~~~l~~~-~~-~~tiii~sh~~-~~~~-~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 166 SALDTHTEREIQAALRDV-SK-GRTTIVIAHRL-STIV-NADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred ccCCHHHHHHHHHHHHHh-cC-CCEEEEEcCCH-HHHH-hCCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999998 45 89999999997 4564 59999999999999999887654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=322.29 Aligned_cols=202 Identities=24% Similarity=0.395 Sum_probs=167.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPD--DCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~--~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+.++ ...++|+|.++|+++.. ..++.++|+||++.+++.
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~- 101 (253)
T PRK14261 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK- 101 (253)
T ss_pred eeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-
Confidence 489999999999999999999999999999998753 11137999999998742 245679999999888874
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||+||+.|....+... ........+.++++.+++.+ ..++. +..||||||||++|||+|+.+|+++
T Consensus 102 tv~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ll 171 (253)
T PRK14261 102 SIYENVAYGPRIHGEK--NKKTLDTIVEKSLKGAALWDEVKDRLHDS--------ALSLSGGQQQRLCIARTLAVNPEVI 171 (253)
T ss_pred cHHHHHHhhHHhcCCC--CHHHHHHHHHHHHHHhcCchhhHHHhhcC--------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999875443211 11222345677888888743 24455 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ + +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 172 lLDEP~~gLD~~~~~~l~~~l~~~~-~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 172 LMDEPCSALDPIATAKIEDLIEDLK-K-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHh-h-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 9999999999999999999999994 4 58999999997 4788899999999999999999998654
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=325.34 Aligned_cols=202 Identities=26% Similarity=0.403 Sum_probs=168.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. ..++|+|+++|.++.. .+++.++|++|++.+++.
T Consensus 42 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~- 120 (272)
T PRK14236 42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK- 120 (272)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-
Confidence 5899999999999999999999999999999998741 0147999999998742 246789999999888886
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|++||+.+........ ......+.+.++++.+++.+ ..++. +.+|||||||||+|||||+.+|++|
T Consensus 121 tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~ll 190 (272)
T PRK14236 121 SIYENVVYGLRLQGIN--NRRVLDEAVERSLRGAALWDEVKDRLHEN--------AFGLSGGQQQRLVIARAIAIEPEVL 190 (272)
T ss_pred cHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHcCCChhHHHHhhCC--------cccCCHHHHHHHHHHHHHHCCCCEE
Confidence 9999998865432211 11122345677888888853 34555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ + +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 191 lLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 191 LLDEPTSALDPISTLKIEELITELK-S-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHH-h-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 9999999999999999999999994 4 68999999997 5788899999999999999999988653
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=362.39 Aligned_cols=202 Identities=22% Similarity=0.332 Sum_probs=172.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC-------------c----cc-cccEEEE
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-------------G----KF-RSACGFM 65 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~-------------~----~~-~~~ig~v 65 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|..+. . .+ ++.||||
T Consensus 33 ~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v 109 (623)
T PRK10261 33 RNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred EeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence 4799999999999999999999999999999999984 799999997441 0 12 2479999
Q ss_pred ccCC--CCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC---ccCcccCCcCCCCCCCCChHHHHHHHH
Q psy2520 66 YQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQKVVLSGGERKRLSF 140 (290)
Q Consensus 66 ~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~v~~~~~~~~~~LSgGqrqRv~i 140 (290)
||++ .+++.+||.||+.++...+.. .......+++.++++.+||.+ ..+++ +.+|||||||||+|
T Consensus 110 ~Q~~~~~l~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--------~~~LSgGq~QRv~i 179 (623)
T PRK10261 110 FQEPMTSLNPVFTVGEQIAESIRLHQG--ASREEAMVEAKRMLDQVRIPEAQTILSRY--------PHQLSGGMRQRVMI 179 (623)
T ss_pred EeCchhhcCCCCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHCCCCChhhHHhCC--------CccCCHHHHHHHHH
Confidence 9997 678889999999997654211 122333456789999999964 45677 55699999999999
Q ss_pred HHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 141 ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 141 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+||+.+|++|||||||++||+.++.+++++|++++++.|+|||+||||+ .++..+||||++|++|+++..|++++++
T Consensus 180 A~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 180 AMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred HHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 99999999999999999999999999999999999655689999999997 5788999999999999999999988764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=323.18 Aligned_cols=204 Identities=23% Similarity=0.336 Sum_probs=167.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|.. ..+|+|+++|+++.. .+++.++|+||++.++ .+
T Consensus 25 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~ 103 (261)
T PRK14263 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SM 103 (261)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cc
Confidence 57999999999999999999999999999999997610 137999999998742 2456799999998877 58
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|++||+.++...... . ......+.++++.+++.+........ .+.+|||||+||++|||||+.+|++|||||
T Consensus 104 tv~enl~~~~~~~~~---~-~~~~~~~~~~l~~~~l~~~i~~~~~~----~~~~LS~G~~qrv~laral~~~p~llllDE 175 (261)
T PRK14263 104 SIFDNVAFGLRLNRY---K-GDLGDRVKHALQGAALWDEVKDKLKV----SGLSLSGGQQQRLCIARAIATEPEVLLLDE 175 (261)
T ss_pred cHHHHHHHHHhhcCc---h-HHHHHHHHHHHHHcCCchhhhhhhhC----CcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999999987543321 1 12234577889999985432211111 145699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe--------CCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--------DSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~--------~G~i~~~g~~~~~~ 219 (290)
||+|||+.++..+++.|+++ .+ +.|||++||++ .++.++||++++|+ +|+++..|++++++
T Consensus 176 PtsgLD~~~~~~l~~~l~~~-~~-~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 176 PCSALDPIATRRVEELMVEL-KK-DYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred CCccCCHHHHHHHHHHHHHH-hc-CCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 99999999999999999999 44 68999999997 47889999999996 89999999998764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=332.78 Aligned_cols=206 Identities=21% Similarity=0.327 Sum_probs=169.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||+|++||+++|+|||||||||||++|+|+.++. ...+|+|.++|+++.. .+++.++|+||++.+++ .
T Consensus 99 ~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ 177 (329)
T PRK14257 99 HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-M 177 (329)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-C
Confidence 5899999999999999999999999999999998631 0147999999999852 35778999999988875 7
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|++||+.|+....... ......+.+.++++.++|.+..+..+++. +..|||||||||+|||||+.+|+||||||
T Consensus 178 ti~eNi~~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~l~~~~~~~----~~~LSgGqkqRl~LARAl~~~p~IlLLDE 251 (329)
T PRK14257 178 SIFDNVAYGPRNNGIN--DRKILEKIVEKSLKSAALWDEVKDDLDKA----GNALSGGQQQRLCIARAIALEPEVLLMDE 251 (329)
T ss_pred cHHHHHHhHHHhcCCC--hHHHHHHHHHHHHHHcCCcchhhhhhhCC----cccCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 9999999865332111 12222334667888888754333333332 56699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||++||+.+...+.+.|+++. + ++|||++||++ ..+.++||||++|++|+++..|++.+++
T Consensus 252 Pts~LD~~~~~~i~~~i~~l~-~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 252 PTSALDPIATAKIEELILELK-K-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred CcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999984 4 68999999997 5788899999999999999999999775
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=366.28 Aligned_cols=203 Identities=28% Similarity=0.419 Sum_probs=171.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+|++|+|||.+||+|+||||||||+|+|+|++.|. +|+|.+||.++.. .+|++||||+|++.+|.. |++|
T Consensus 490 ~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~e 565 (709)
T COG2274 490 EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRE 565 (709)
T ss_pred hceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHH
Confidence 4899999999999999999999999999999999994 8999999999865 489999999999887764 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.++......+......+...+.+.+. .+..-+++.+++. ..+||||||||++|||||+++|+|||||||||+
T Consensus 566 Ni~l~~p~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E~----G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSa 639 (709)
T COG2274 566 NIALGNPEATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGEG----GANLSGGQRQRLALARALLSKPKILLLDEATSA 639 (709)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHH--hcccccccccccC----CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 9998754322222222222222333333 3566788899886 456999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+.+...+.+.|.++. .|+|+|+++|++ ...+.||||++|++|+++.+|+.++++.
T Consensus 640 LD~~sE~~I~~~L~~~~--~~~T~I~IaHRl--~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 640 LDPETEAIILQNLLQIL--QGRTVIIIAHRL--STIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred cCHhHHHHHHHHHHHHh--cCCeEEEEEccc--hHhhhccEEEEccCCceeccCCHHHHHH
Confidence 99999999999999983 379999999997 4688999999999999999999998764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=353.04 Aligned_cols=199 Identities=28% Similarity=0.371 Sum_probs=169.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.+||+||++.+++.+||.
T Consensus 21 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (501)
T PRK11288 21 DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVA 97 (501)
T ss_pred eeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHH
Confidence 4899999999999999999999999999999999984 8999999998742 2457899999999899999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||+.++...............+++.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 169 (501)
T PRK11288 98 ENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP--------LKYLSIGQRQMVEIAKALARNARVIAFDEPTS 169 (501)
T ss_pred HHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc--------hhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 9999853211101011222335678899999998777777 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 215 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~ 215 (290)
|||+.++..+.++|++++ +.|.|||++||++ .++..+||++++|++|+++..++.
T Consensus 170 ~LD~~~~~~l~~~l~~~~-~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 170 SLSAREIEQLFRVIRELR-AEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999994 4589999999997 578899999999999999876653
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=353.64 Aligned_cols=201 Identities=23% Similarity=0.330 Sum_probs=170.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEEC-CEe---cCc-------cccccEEEEccCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVN-GKP---VEG-------KFRSACGFMYQHDLFS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~-G~~---~~~-------~~~~~ig~v~Q~~~~~ 72 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++ |.+ +.. .+++.+||+||++.++
T Consensus 301 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 377 (520)
T TIGR03269 301 DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY 377 (520)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccC
Confidence 4799999999999999999999999999999999984 8999996 642 211 1345799999998889
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 147 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 147 (290)
+.+||+||+.+...... ......+++.++++.++|.+ ..+++ +.+|||||||||+|||||+.+
T Consensus 378 ~~~tv~e~l~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~~LSgGq~qrv~laral~~~ 445 (520)
T TIGR03269 378 PHRTVLDNLTEAIGLEL----PDELARMKAVITLKMVGFDEEKAEEILDKY--------PDELSEGERHRVALAQVLIKE 445 (520)
T ss_pred CCCcHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCCCCCccchhhhhCC--------hhhCCHHHHHHHHHHHHHhcC
Confidence 99999999987543211 11222345778999999975 45677 556999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 148 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 148 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|++|||||||+|||+.++..+++.|++++++.|.|||++|||+ .++.++||++++|++|++++.|++++++.
T Consensus 446 p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 446 PRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999655589999999997 57889999999999999999999887653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=324.71 Aligned_cols=202 Identities=24% Similarity=0.387 Sum_probs=168.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. ...+|+|.++|.++.. .+++.++|+||++.+++ .|
T Consensus 38 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~t 116 (276)
T PRK14271 38 DQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MS 116 (276)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-cc
Confidence 5899999999999999999999999999999998851 0147999999998742 24678999999988887 79
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc----cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS----QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
++||+.++...... .........+.++++.+++.+. .++. +..||||||||++|||||+.+|++||
T Consensus 117 v~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--------~~~LSgGq~qrl~LAral~~~p~lll 186 (276)
T PRK14271 117 IMDNVLAGVRAHKL--VPRKEFRGVAQARLTEVGLWDAVKDRLSDS--------PFRLSGGQQQLLCLARTLAVNPEVLL 186 (276)
T ss_pred HHHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCCCchhhhHhhCC--------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999886532211 1122223445678888998643 3444 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..+.+.|++++ + +.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 187 LDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 187 LDEPTSALDPTTTEKIEEFIRSLA-D-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999994 4 48999999997 5788999999999999999999998764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=359.85 Aligned_cols=201 Identities=27% Similarity=0.365 Sum_probs=164.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.+||+||||||||||+++|+|++ |. +|+|.+||.++.. .+|+.|+||+|++.+|+. |++|
T Consensus 367 ~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~e 441 (588)
T PRK11174 367 GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRD 441 (588)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHH
Confidence 5899999999999999999999999999999999 73 7999999999865 478899999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
||.++..-....+.....+...+.+.++. +++..++.+|+.+ ..||||||||++|||||+++|++||||||||+
T Consensus 442 NI~~g~~~~~~eei~~al~~a~l~~~i~~--lp~G~dT~vge~G----~~LSGGQrQRialARAll~~~~IliLDE~TSa 515 (588)
T PRK11174 442 NVLLGNPDASDEQLQQALENAWVSEFLPL--LPQGLDTPIGDQA----AGLSVGQAQRLALARALLQPCQLLLLDEPTAS 515 (588)
T ss_pred HhhcCCCCCCHHHHHHHHHHhCHHHHHHh--cccccccccccCC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 99986321111111111111112222322 3455688888753 45999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+.+...+.+.|+++ . +++|+|++||+++ ..+.||+|++|++|+++..|+.++++
T Consensus 516 LD~~te~~i~~~l~~~-~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 516 LDAHSEQLVMQALNAA-S-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred CCHHHHHHHHHHHHHH-h-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHH
Confidence 9999999999999998 3 3799999999973 56779999999999999999999775
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=319.80 Aligned_cols=202 Identities=22% Similarity=0.273 Sum_probs=166.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcC--CCCCCCCccEEEECCEecCc----cccc-cEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEG----KFRS-ACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~--~~~~~~~~G~I~i~G~~~~~----~~~~-~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|+++|.++.. ..++ .++|++|++.+++.+|
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 100 (252)
T CHL00131 24 KGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVS 100 (252)
T ss_pred ecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCEEcccCChhhhheeeEEEEecccccccccc
Confidence 479999999999999999999999999999998 456 48999999998753 1222 4889999999999999
Q ss_pred HHHHHHHHHHhcCc----hhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCC-CCChHHHHHHHHHHHHHhCCCe
Q psy2520 77 VYEHLYFMALLKLD----RRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKV-VLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 77 v~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~-~LSgGqrqRv~ia~aL~~~p~l 150 (290)
+.+++.+....... ......+....+.++++.+++. ...++. +. .|||||||||+|||||+.+|++
T Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~~LSgG~~qrv~la~al~~~p~l 172 (252)
T CHL00131 101 NADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN--------VNEGFSGGEKKRNEILQMALLDSEL 172 (252)
T ss_pred HHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc--------cccCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999875432110 0111122234567889999997 356666 33 3999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhh-cCeEEEEeCCeEEEEcCHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||||||+|||+.++..+.++|++++ ++|.|||++||++ .++..+ ||++++|++|++++.|+++.+
T Consensus 173 lllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 173 AILDETDSGLDIDALKIIAEGINKLM-TSENSIILITHYQ-RLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEecCH-HHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999999999985 4589999999997 456666 899999999999999988843
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=353.33 Aligned_cols=205 Identities=26% Similarity=0.405 Sum_probs=171.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc-------ccc-ccEEEEccCCC--C
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG-------KFR-SACGFMYQHDL--F 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~-------~~~-~~ig~v~Q~~~--~ 71 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|. ..++|+|.++|+++.. .++ +.+||+||++. +
T Consensus 26 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~ 105 (529)
T PRK15134 26 NDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSL 105 (529)
T ss_pred eceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhc
Confidence 5899999999999999999999999999999999862 1137999999998743 122 57999999864 6
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC---ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
++.+|+.+++.+....... .......+++.++++.++|.+ ..+++ +.+|||||||||+|||||+.+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------~~~LSgGe~qrv~iAraL~~~p 175 (529)
T PRK15134 106 NPLHTLEKQLYEVLSLHRG--MRREAARGEILNCLDRVGIRQAAKRLTDY--------PHQLSGGERQRVMIAMALLTRP 175 (529)
T ss_pred CchhhHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHCCCCChHHHHhhC--------CcccCHHHHHHHHHHHHHhcCC
Confidence 6778999998865432111 122333456789999999976 34677 5569999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
++|||||||++||+.++..++++|++++++.|.|||+|||++ .++..+||+|++|++|++++.|++++++
T Consensus 176 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 176 ELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred CEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999655589999999997 4788899999999999999999988764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=352.37 Aligned_cols=203 Identities=24% Similarity=0.337 Sum_probs=170.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.||||++++|++++|+|||||||||||++|+|+++|. .++|+|.++|+++.. ..++.+||+||++.+++.+||+
T Consensus 18 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 96 (500)
T TIGR02633 18 DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVA 96 (500)
T ss_pred cceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHH
Confidence 5899999999999999999999999999999999862 137999999998753 1346799999999899999999
Q ss_pred HHHHHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCcc-CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 79 EHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQ-HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 79 e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
||+.++....... ........+++.++++.+++.+.. ++. +.+|||||||||+|||||+.+|++||||||
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgG~~qrv~iA~al~~~p~lllLDEP 168 (500)
T TIGR02633 97 ENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP--------VGDYGGGQQQLVEIAKALNKQARLLILDEP 168 (500)
T ss_pred HHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc--------hhhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 9998864322100 011222335678899999998654 455 445999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
|+|||+.++..+.+.|++++ +.|.|||++||++ .++..+||++++|++|+++..|++++
T Consensus 169 t~~LD~~~~~~l~~~l~~l~-~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 169 SSSLTEKETEILLDIIRDLK-AHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred CCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999999999999995 5589999999997 57889999999999999999887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=318.62 Aligned_cols=193 Identities=24% Similarity=0.335 Sum_probs=161.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+++.++|+||++.+++ .||+|
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~e 99 (225)
T PRK10247 24 NNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYD 99 (225)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHH
Confidence 5899999999999999999999999999999999884 8999999998753 24568999999988887 49999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.+........ ...+.+.++++.+++. ...++. +..|||||+|||+|||||+.+|+++||||||+
T Consensus 100 nl~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (225)
T PRK10247 100 NLIFPWQIRNQQ-----PDPAIFLDDLERFALPDTILTKN--------IAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166 (225)
T ss_pred HHHhHHhhcCCC-----hHHHHHHHHHHHcCCChHHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 998864332111 1123467899999996 466777 45699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe-CCeEEEEcCH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DSRTAFIGSK 215 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~-~G~i~~~g~~ 215 (290)
|||+.++..+.+.|++++++.|.|||++||++ .++ ..||++++|+ ++..+.+|..
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~-~~~-~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 167 ALDESNKHNVNEIIHRYVREQNIAVLWVTHDK-DEI-NHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh-HHH-HhCCEEEEEecccchHhhhhh
Confidence 99999999999999998655689999999997 456 5799999995 5555555543
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=311.81 Aligned_cols=176 Identities=34% Similarity=0.566 Sum_probs=148.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+||||||||||+++|+|+++|...++|+|.++|.++.. ..++.++|++|++.+++.+||+||
T Consensus 24 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 103 (202)
T cd03233 24 KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRET 103 (202)
T ss_pred eeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHH
Confidence 48999999999999999999999999999999998311148999999998753 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+..... .++. +..||||||||++|||||+.+|++|||||||+||
T Consensus 104 l~~~~~~~--------------------------~~~~--------~~~LS~Ge~qrl~laral~~~p~llllDEPt~~L 149 (202)
T cd03233 104 LDFALRCK--------------------------GNEF--------VRGISGGERKRVSIAEALVSRASVLCWDNSTRGL 149 (202)
T ss_pred Hhhhhhhc--------------------------cccc--------hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccC
Confidence 98753210 2334 4459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+.++..+++.|++++++.+.|+|+++|+...++.++||++++|++|+++..|
T Consensus 150 D~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 150 DSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999955446676666554335788999999999999998654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=325.55 Aligned_cols=200 Identities=23% Similarity=0.368 Sum_probs=166.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||+|++||+++|+|||||||||||++|+|+++|.. ..+|+|+++|+++.. .+++.++|+||++.+++.
T Consensus 56 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~- 134 (285)
T PRK14254 56 DDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK- 134 (285)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-
Confidence 48999999999999999999999999999999986310 147999999998742 246789999999888875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.+....... .. ....++.++++.+++.. ..++. +.+|||||||||+|||||+.+|++|
T Consensus 135 tv~enl~~~~~~~~~---~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--------~~~LSgGe~qrv~LAraL~~~p~lL 202 (285)
T PRK14254 135 SIYDNVAYGLKIQGY---DG-DIDERVEESLRRAALWDEVKDQLDSS--------GLDLSGGQQQRLCIARAIAPDPEVI 202 (285)
T ss_pred CHHHHHHHHHHHcCC---cH-HHHHHHHHHHHHcCCCchhHHHHhCC--------cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999886543321 11 22345778899998853 44555 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEE-EEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII-LLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|++++ + +.|||++||++ .++..+|||++ +|++|+++..|+++++.
T Consensus 203 LLDEPts~LD~~~~~~l~~~L~~~~-~-~~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 203 LMDEPASALDPVATSKIEDLIEELA-E-EYTVVIVTHNM-QQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 9999999999999999999999994 4 37999999997 57888999975 67999999999988653
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=351.86 Aligned_cols=203 Identities=26% Similarity=0.305 Sum_probs=171.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCCccEEEEC-----------------------CEecC---
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVN-----------------------GKPVE--- 55 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~--~~~~~~~G~I~i~-----------------------G~~~~--- 55 (290)
.|+||++.+|++++|+|||||||||||++|+|++ +| ++|+|.++ |.++.
T Consensus 17 ~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p---~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 93 (520)
T TIGR03269 17 KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP---TSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEE 93 (520)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC---CceEEEEeccccccccccccccccccccccccccccccc
Confidence 4899999999999999999999999999999997 57 47999997 32220
Q ss_pred -------c----cccccEEEEccC-CCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcC
Q psy2520 56 -------G----KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123 (290)
Q Consensus 56 -------~----~~~~~ig~v~Q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~ 123 (290)
. .+++.++|+||+ +.+++.+||+||+.+....... ...+..+++.++++.+||.+..++.
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~----- 165 (520)
T TIGR03269 94 VDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGY---EGKEAVGRAVDLIEMVQLSHRITHI----- 165 (520)
T ss_pred hhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCChhhhhcC-----
Confidence 0 135679999997 6788889999999986543321 1223345678999999998888887
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 124 ~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
+.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++.|.|||+||||+ ..+.++||++++
T Consensus 166 ---~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~~~~d~i~~ 241 (520)
T TIGR03269 166 ---ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP-EVIEDLSDKAIW 241 (520)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEE
Confidence 4559999999999999999999999999999999999999999999999655689999999997 478889999999
Q ss_pred EeCCeEEEEcCHHHHHHH
Q psy2520 204 LADSRTAFIGSKDAALAF 221 (290)
Q Consensus 204 l~~G~i~~~g~~~~~~~~ 221 (290)
|++|++++.|++++++..
T Consensus 242 l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 242 LENGEIKEEGTPDEVVAV 259 (520)
T ss_pred EeCCEEeeecCHHHHHHH
Confidence 999999999998877653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=325.65 Aligned_cols=202 Identities=22% Similarity=0.358 Sum_probs=165.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccc-cccEEEEccCCCCC--CCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF-RSACGFMYQHDLFS--PSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~-~~~ig~v~Q~~~~~--~~lTv~e~ 80 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... ++.++|+||++.+. ...++.++
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~ 100 (272)
T PRK15056 24 RDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDV 100 (272)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhh
Confidence 4899999999999999999999999999999999984 899999999875433 34699999987542 23478888
Q ss_pred HHHHHHhc-CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 81 LYFMALLK-LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 81 l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
+.++.... .............+.++++.+++.+..++. +.+||||||||++|||||+.+|++|||||||+|
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~LSgG~~qrv~laraL~~~p~llllDEPt~~ 172 (272)
T PRK15056 101 VMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ--------IGELSGGQKKRVFLARAIAQQGQVILLDEPFTG 172 (272)
T ss_pred eecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 86542110 000001112234567889999998888887 455999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+.++..+.++|++++ ++|.|||++||++ .++.++||+++++ +|+++..|++++++
T Consensus 173 LD~~~~~~l~~~L~~~~-~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 173 VDVKTEARIISLLRELR-DEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred CCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 99999999999999995 4589999999997 5788999999877 89999999988653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=352.22 Aligned_cols=199 Identities=21% Similarity=0.369 Sum_probs=168.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccC---CCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQH---DLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~---~~~~~~l 75 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|+++|+++.. ..++.+||+||+ ..+++.+
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 5899999999999999999999999999999999984 7999999998743 235679999998 4688899
Q ss_pred CHHHHHHHHHHhc---Cc---hhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 76 TVYEHLYFMALLK---LD---RRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 76 Tv~e~l~~~~~~~---~~---~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
||+||+.+....+ .. .........+.+.++++.+++. +..+++ +.+|||||||||+|||||+.+|
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGq~qrv~lAral~~~p 428 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN--------ITELSGGNQQKVLISKWLCCCP 428 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCc--------cccCChHHHHHHHHHHHHhcCC
Confidence 9999998753211 00 0001112234578899999996 778888 4559999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCH
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 215 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~ 215 (290)
++|||||||+|||+.++..++++|++++ +.|.|||++|||+ .++..+||++++|++|+++..++.
T Consensus 429 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 429 EVIIFDEPTRGIDVGAKAEIYKVMRQLA-DDGKVILMVSSEL-PEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred CEEEECCCCCCcCHHHHHHHHHHHHHHH-HCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999995 4589999999997 578899999999999999988765
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=316.77 Aligned_cols=193 Identities=29% Similarity=0.388 Sum_probs=156.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. .+++.++|++|++.+++ .||.|
T Consensus 21 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 96 (220)
T cd03245 21 DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRD 96 (220)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHH
Confidence 4899999999999999999999999999999999884 7999999998743 24567999999988876 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccC---CcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG---SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~---~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+.+..... . ...+.++++.+++.+..++.+. ......+.+||||||||++|||||+.+|++||||||
T Consensus 97 ~l~~~~~~~-----~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEP 167 (220)
T cd03245 97 NITLGAPLA-----D----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEP 167 (220)
T ss_pred HhhcCCCCC-----C----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 997642110 1 1234567777777665554321 000001356999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+|||+.++..+++.|++++ +. .|||++||++. .+ ++||++++|++|++++.|
T Consensus 168 t~~LD~~~~~~l~~~l~~~~-~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 168 TSAMDMNSEERLKERLRQLL-GD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred cccCCHHHHHHHHHHHHHhc-CC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999984 43 89999999974 44 799999999999997654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=352.13 Aligned_cols=202 Identities=20% Similarity=0.341 Sum_probs=169.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC-CCCCCccEEEECCEecCc-----cccccEEEEccCC---CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP-DDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD---LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~-~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~---~~~~~ 74 (290)
.|+||++++||+++|+||||||||||+++|+|+++ |+ +|+|.++|+++.. ..++.++|++|++ .+++.
T Consensus 279 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (506)
T PRK13549 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPV 355 (506)
T ss_pred cceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCC
Confidence 57999999999999999999999999999999998 44 7999999998752 1356799999985 47888
Q ss_pred CCHHHHHHHHHH--hcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 75 LTVYEHLYFMAL--LKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 75 lTv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
+||.||+.+... .............+.+.++++.+++. +..+++ +.+|||||||||+|||||+.+|++|
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgG~kqrv~lA~al~~~p~ll 427 (506)
T PRK13549 356 MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA--------IARLSGGNQQKAVLAKCLLLNPKIL 427 (506)
T ss_pred CCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc--------cccCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999987532 11100011222335678899999996 567887 4559999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
||||||+|||+.++..++++|+++++ .|.|||++|||+ .++.++||++++|++|+++..|+++++
T Consensus 428 lLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 428 ILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999954 589999999997 578899999999999999998877653
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=322.29 Aligned_cols=200 Identities=21% Similarity=0.354 Sum_probs=165.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. ...+|+|.++|+++.. .+++.++|+||++.+++.
T Consensus 37 ~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~- 115 (274)
T PRK14265 37 VDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK- 115 (274)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-
Confidence 4899999999999999999999999999999998631 1137999999998742 246789999999888874
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.++....... . ...+.+.++++.+++. +..++. +..|||||||||+|||||+.+|++|
T Consensus 116 tv~~nl~~~~~~~~~~---~-~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LSgGq~qrv~LAraL~~~p~ll 183 (274)
T PRK14265 116 SIYENIAFAPRANGYK---G-NLDELVEDSLRRAAIWEEVKDKLKEK--------GTALSGGQQQRLCIARAIAMKPDVL 183 (274)
T ss_pred cHHHHHHhHHHhcCch---H-HHHHHHHHHHHHcccchhhHHHhcCC--------cccCCHHHHHHHHHHHHHhhCCCEE
Confidence 9999998865432111 1 1123356677777763 334555 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe---------CCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA---------DSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~---------~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ ++ +.|||++||++ .++.++||++++|+ +|+++..|++++++
T Consensus 184 lLDEPt~~LD~~~~~~l~~~L~~~-~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 184 LMDEPCSALDPISTRQVEELCLEL-KE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 999999999999999999999999 44 68999999997 57889999999997 89999999998764
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=318.83 Aligned_cols=200 Identities=26% Similarity=0.427 Sum_probs=166.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEEC------CEecCc----cccccEEEEccCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVN------GKPVEG----KFRSACGFMYQHDLFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~------G~~~~~----~~~~~ig~v~Q~~~~~~ 73 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|. +|+|.++ |.++.. .+++.++|++|++.+++
T Consensus 27 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 103 (257)
T PRK14246 27 KDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---DSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFP 103 (257)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---cCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCC
Confidence 5899999999999999999999999999999999984 5555555 455432 24678999999999999
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
.+||+||+.+....... .......+.+.++++.+++.. ..++. +..||+|||||++|||||+.+|+
T Consensus 104 ~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~LS~G~~qrl~laral~~~P~ 173 (257)
T PRK14246 104 HLSIYDNIAYPLKSHGI--KEKREIKKIVEECLRKVGLWKEVYDRLNSP--------ASQLSGGQQQRLTIARALALKPK 173 (257)
T ss_pred CCcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCCccchhhhcCC--------cccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999987543211 112223345778899999863 34555 55699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
++||||||+|||+.++..+.+.|.++ ++ +.|||++||++ ..+..+||++++|++|+++..|+++++.
T Consensus 174 llllDEPt~~LD~~~~~~l~~~l~~~-~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 174 VLLMDEPTSMIDIVNSQAIEKLITEL-KN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHH-hc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999998 44 58999999997 5778899999999999999999988654
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-44 Score=321.28 Aligned_cols=200 Identities=21% Similarity=0.341 Sum_probs=165.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPD--DCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~--~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|++++ ...++|+|+++|+++.. .+++.++|++|++.+++ .
T Consensus 27 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~ 105 (264)
T PRK14243 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-K 105 (264)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc-c
Confidence 579999999999999999999999999999999753 10147999999998731 24667999999988887 4
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.+........ ....+.+.++++.+++.+ ..++. +.+||||||||++|||||+.+|++|
T Consensus 106 tv~enl~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LSgGq~qrv~laral~~~p~ll 173 (264)
T PRK14243 106 SIYDNIAYGARINGYK----GDMDELVERSLRQAALWDEVKDKLKQS--------GLSLSGGQQQRLCIARAIAVQPEVI 173 (264)
T ss_pred cHHHHHHhhhhhcCcc----hHHHHHHHHHHHHhCchhhHHHHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998865432111 112234566777777743 34444 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe---------CCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA---------DSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~---------~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.+.|++++ + +.|||++||++ .++..+||++++|+ +|+++..|+++++.
T Consensus 174 lLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 174 LMDEPCSALDPISTLRIEELMHELK-E-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999999999999999999999994 4 48999999997 57899999999998 89999999998764
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=311.25 Aligned_cols=182 Identities=25% Similarity=0.332 Sum_probs=157.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++|++.+++.+||.||
T Consensus 18 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~ 94 (204)
T PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALEN 94 (204)
T ss_pred ecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHH
Confidence 4899999999999999999999999999999999984 8999999998753 356789999999989999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+....... ...+.+.++++.+|+.+..++. +..||||||||++||+||+.+|+++||||||++|
T Consensus 95 l~~~~~~~~~------~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 95 LRFYQRLHGP------GDDEALWEALAQVGLAGFEDVP--------VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred HHHHHHhcCc------cHHHHHHHHHHHcCCHHHhhCC--------hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 9887543211 1224567899999998777777 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
|+.++..+.++|++++ ++|.|||++||++ .++....+|++++
T Consensus 161 D~~~~~~l~~~l~~~~-~~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 161 DKQGVARLEALLAQHA-EQGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred CHHHHHHHHHHHHHHH-HCCCEEEEEecCh-hhhccCCceEEec
Confidence 9999999999999985 4588999999997 4676766787776
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=317.11 Aligned_cols=202 Identities=19% Similarity=0.328 Sum_probs=167.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++.+||+++|+||||||||||+++|+|+.. |....+|+|.++|+++.. ..++.++|+||++.+++.
T Consensus 20 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~- 98 (250)
T PRK14266 20 KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK- 98 (250)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-
Confidence 58999999999999999999999999999999864 211147999999998742 246789999999888875
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|+.||+.++....... ......+++.++++.+++.+ ..++. +..||||||||++|||||+.+|++|
T Consensus 99 t~~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~Gq~qrv~laral~~~p~ll 168 (250)
T PRK14266 99 SIFDNVAYGLRIHGED--DEDFIEERVEESLKAAALWDEVKDKLDKS--------ALGLSGGQQQRLCIARTIAVSPEVI 168 (250)
T ss_pred hHHHHHHhHHhhcCCC--CHHHHHHHHHHHHHHcCCchhHHHHHhCC--------cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998764322111 11223355778888888853 33444 4569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..+.++|+++ ++ +.|||++||++ .++..++|++++|++|++++.|+++++.
T Consensus 169 llDEP~~gLD~~~~~~l~~~l~~~-~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 169 LMDEPCSALDPISTTKIEDLIHKL-KE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHH-hc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999 44 78999999997 5789999999999999999999998653
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=307.43 Aligned_cols=203 Identities=28% Similarity=0.385 Sum_probs=174.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
+++|+++.|||+++|+||||||||||||.|+|-+.|+ +|++.++|.++.. .+.+.-+.+||+..+-...||+|
T Consensus 18 ~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~e 94 (259)
T COG4559 18 DGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQE 94 (259)
T ss_pred cCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHH
Confidence 5899999999999999999999999999999999995 7999999999865 35677899999987766679999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh------CCCeEEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT------DPALLLC 153 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~------~p~llll 153 (290)
-+.++..-..... ...+..+.+..+|...++.+++.+. ...|||||||||.+||+|++ ++++|+|
T Consensus 95 VV~mGr~p~~~g~-~~~e~~~i~~~ala~~d~~~la~R~--------y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~L 165 (259)
T COG4559 95 VVQMGRIPHRSGR-EPEEDERIAAQALAATDLSGLAGRD--------YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFL 165 (259)
T ss_pred HHHhcccccccCC-CchhhHHHHHHHHHHcChhhhhccc--------hhhcCchHHHHHHHHHHHHHccCCCCCCceEEe
Confidence 9999864322111 1123334567899999999999888 45599999999999999985 5568999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||+||...+..++++.++++++ |..|++|-||++ ....|||||++|++|+++..|+|.+++.
T Consensus 166 DEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 166 DEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred cCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccch-HHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 9999999999999999999999765 789999999985 7889999999999999999999998764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=350.23 Aligned_cols=202 Identities=19% Similarity=0.360 Sum_probs=170.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC---CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD---LFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~---~~~~~l 75 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+||++|++ .+++.+
T Consensus 269 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 269 NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred ccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence 5899999999999999999999999999999999984 7999999998753 2356799999985 578889
Q ss_pred CHHHHHHHHHHhcCc---hhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLD---RRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
||.||+.+....... .........+.+.++++.+++. +..+++ +.+|||||||||+|||||+.+|++|
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGekqrv~lA~al~~~p~ll 417 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA--------IGLLSGGNQQKVAIARGLMTRPKVL 417 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc--------hhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999875321100 0011122235578899999995 677888 4559999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
||||||+|||+.++..+.++|++++. .|.|||++|||+ .++..+||++++|++|+++..|+++++
T Consensus 418 lLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 418 ILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSEM-PEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999954 589999999997 578999999999999999998887654
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=351.22 Aligned_cols=202 Identities=21% Similarity=0.302 Sum_probs=170.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC---CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD---LFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~---~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.++|+||++ .+++.+
T Consensus 270 ~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 5899999999999999999999999999999999984 7999999998742 2356799999985 488899
Q ss_pred CHHHHHHHHHHhcCc--h-hhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMALLKLD--R-RVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|+.||+.++...... . ........+.+.++++.+++. +..+++ +..|||||||||+||+||+.+|++|
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGq~qrl~la~al~~~p~ll 418 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL--------IMNLSGGNQQKAILGRWLSEDMKVI 418 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc--------cccCCHHHHHHHHHHHHHccCCCEE
Confidence 999999875321100 0 001122234578899999994 677888 4559999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
||||||+|||+.++..++++|++++ +.|.|||++|||+ .++.++||++++|++|++++.|+++++
T Consensus 419 lLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELA-AQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHH-hCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999995 4589999999997 578999999999999999999987753
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=307.32 Aligned_cols=166 Identities=44% Similarity=0.773 Sum_probs=147.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++|++++|+|||||||||||++|+|+.+ | .+|+|.++|+++...+++.++|++|++.+++.+||+||+
T Consensus 24 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 100 (192)
T cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV---ITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREAL 100 (192)
T ss_pred EccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---cceEEEECCEehHHHhhhceEEecccCccccCCcHHHHH
Confidence 47999999999999999999999999999999864 5 489999999987644567899999999889999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.+.... + . ||||||||++|||||+.+|++|||||||++||
T Consensus 101 ~~~~~~-------------------~----------~-----------LSgGe~qrv~la~al~~~p~vlllDEP~~~LD 140 (192)
T cd03232 101 RFSALL-------------------R----------G-----------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140 (192)
T ss_pred HHHHHH-------------------h----------c-----------CCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCC
Confidence 874210 0 2 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC-CeEEEEc
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-SRTAFIG 213 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~-G~i~~~g 213 (290)
+.++..+++.|++++ +.|.|||++||++..++..+||++++|++ |++++.|
T Consensus 141 ~~~~~~l~~~l~~~~-~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 141 SQAAYNIVRFLKKLA-DSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHHHHH-HcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999984 45899999999974246789999999999 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=306.71 Aligned_cols=166 Identities=49% Similarity=0.844 Sum_probs=148.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~--~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++|++++|+||||||||||+++|+|++ +|. +|+|.++|+++.. .+++.++|+||++.+++.+|++||
T Consensus 26 ~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 102 (194)
T cd03213 26 KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRET 102 (194)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHH
Confidence 4899999999999999999999999999999999 884 8999999998864 356789999999989999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+..... . ||||||||++|||||+.+|+++||||||++|
T Consensus 103 i~~~~~~~-----------------------------~-----------LS~G~~qrv~laral~~~p~illlDEP~~~L 142 (194)
T cd03213 103 LMFAAKLR-----------------------------G-----------LSGGERKRVSIALELVSNPSLLFLDEPTSGL 142 (194)
T ss_pred HHHHHHhc-----------------------------c-----------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 97642110 2 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+.++..+.+.|++++ ++|+|+|++||++..++..+||++++|++|++++.|
T Consensus 143 D~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 143 DSSSALQVMSLLRRLA-DTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999984 458999999999743678899999999999998654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=349.68 Aligned_cols=202 Identities=19% Similarity=0.314 Sum_probs=169.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC---CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD---LFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~---~~~~~l 75 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. ..++.++|+||++ .+++.+
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 356 (510)
T PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA 356 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence 5899999999999999999999999999999999984 7999999998753 1345799999974 478889
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
|+.+|+.+................+.+.++++.+++. +..+++ +.+|||||||||+|||||+.+|++||||
T Consensus 357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgG~kqrl~la~al~~~p~lLlLD 428 (510)
T PRK15439 357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA--------ARTLSGGNQQKVLIAKCLEASPQLLIVD 428 (510)
T ss_pred cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc--------cccCCcHHHHHHHHHHHHhhCCCEEEEC
Confidence 9999986432110000001112234578899999997 678888 4559999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||+|||+.++..+.++|++++. .|.|||++|||+ .++.++||++++|++|+++..|+++++
T Consensus 429 EPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 429 EPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred CCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999954 589999999997 588999999999999999998877643
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=312.71 Aligned_cols=186 Identities=28% Similarity=0.346 Sum_probs=156.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..+...+++.+||.||+.+
T Consensus 39 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--------~~~~~~~~~~~tv~enl~~ 107 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSL--------LGLGGGFNPELTGRENIYL 107 (224)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchh--------hcccccCCCCCcHHHHHHH
Confidence 4899999999999999999999999999999999984 8999999987531 1112345677899999988
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....... ......+.+.++++.+++.+..++. +.+||||||||++|||+|+.+|+++||||||+|||+.
T Consensus 108 ~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~ 176 (224)
T cd03220 108 NGRLLGL---SRKEIDEKIDEIIEFSELGDFIDLP--------VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176 (224)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHcCChhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 7543221 1122334567889999998888887 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
++..+.+.|+++++ .|.|||++||++ .++..+||++++|++|+++..|
T Consensus 177 ~~~~~~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 177 FQEKCQRRLRELLK-QGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999854 489999999997 5788899999999999998754
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=308.71 Aligned_cols=179 Identities=26% Similarity=0.335 Sum_probs=157.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+++.++|++|++.+++.+||+||
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 93 (201)
T cd03231 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLEN 93 (201)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHH
Confidence 5899999999999999999999999999999999984 8999999998743 356789999999988889999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+..... ..+++.++++.+++.+..++. +.+||||||||++|||||+.+|+++||||||+||
T Consensus 94 l~~~~~~~---------~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 94 LRFWHADH---------SDEQVEEALARVGLNGFEDRP--------VAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred HHhhcccc---------cHHHHHHHHHHcCChhhhcCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 98753111 123467899999998877777 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
|+.++..+.+.|++++ +.|.|+|++||++ .++...+++++++
T Consensus 157 D~~~~~~l~~~l~~~~-~~g~tiii~sH~~-~~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHC-ARGGMVVLTTHQD-LGLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEEecCc-hhhhhccceeEec
Confidence 9999999999999984 4589999999997 4788899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=316.18 Aligned_cols=190 Identities=25% Similarity=0.402 Sum_probs=156.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.++|++|++.+++ .||+|
T Consensus 31 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~ 106 (226)
T cd03248 31 QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQD 106 (226)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHH
Confidence 5899999999999999999999999999999999984 8999999988743 24567999999988776 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+.++.................+.++++.+ |+....++. +.+|||||||||+|||+|+.+|++|||||||
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~--------~~~LSgG~~qrv~laral~~~p~llllDEPt 178 (226)
T cd03248 107 NIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK--------GSQLSGGQKQRVAIARALIRNPQVLILDEAT 178 (226)
T ss_pred HhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC--------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 998754321111111111122356778888 777777776 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
+|||+.++..+.+.|+++ .+ +.|||++||++. ++ ..||++++|++|++
T Consensus 179 ~~LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~~-~~-~~~d~i~~l~~g~i 226 (226)
T cd03248 179 SALDAESEQQVQQALYDW-PE-RRTVLVIAHRLS-TV-ERADQILVLDGGRI 226 (226)
T ss_pred ccCCHHHHHHHHHHHHHH-cC-CCEEEEEECCHH-HH-HhCCEEEEecCCcC
Confidence 999999999999999998 44 589999999974 56 46999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=305.67 Aligned_cols=173 Identities=29% Similarity=0.411 Sum_probs=146.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCC-CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDL-FSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~-~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++|++. .+...|
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 85 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAAD 85 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhcccccc
Confidence 5899999999999999999999999999999999984 8999999998741 24567999999863 233579
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.+....... ......+++.++++.+++.+..++. +.+||||||||++|||||+.+|+++|||||
T Consensus 86 v~~nl~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 86 VDQDVAFGPLNLGL---SEAEVERRVREALTAVGASGLRERP--------THCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCchhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999986543211 1222334578899999998888887 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
|+|||+.++..+.++|++++ ++|.|||++||++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~-~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLR-AEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHH-HcCCEEEEEeeccc
Confidence 99999999999999999995 45899999999973
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=309.79 Aligned_cols=184 Identities=26% Similarity=0.309 Sum_probs=159.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..++.++|++|++.+++.+|++||+.
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 104 (214)
T PRK13543 28 GPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLH 104 (214)
T ss_pred ecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHH
Confidence 4799999999999999999999999999999999984 7999999998754 23457999999988899899999998
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+....+.. . ..+.+.++++.+++.+..++. +..||||||||++|||+++.+|+++||||||++||+
T Consensus 105 ~~~~~~~~---~---~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 170 (214)
T PRK13543 105 FLCGLHGR---R---AKQMPGSALAIVGLAGYEDTL--------VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170 (214)
T ss_pred HHHHhcCC---c---HHHHHHHHHHHcCChhhccCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 86543211 1 123456789999998888887 455999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
.++..+.+.|++++ ++|.|||++||++ .++.++||++++++.
T Consensus 171 ~~~~~l~~~l~~~~-~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 171 EGITLVNRMISAHL-RGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHHHHHH-hCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999984 4589999999997 578999999999864
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=312.76 Aligned_cols=203 Identities=22% Similarity=0.243 Sum_probs=162.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~--~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++|++++|+||||||||||+++|+|+. +| ++|+|.++|+++.. . .+..++|++|++.+++.+|
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 94 (248)
T PRK09580 18 RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVS 94 (248)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEEECCCccccCCHHHHhhcceEEEecCchhccchh
Confidence 5899999999999999999999999999999995 46 48999999988743 1 2356999999988888888
Q ss_pred HHHHHHHHHHh-cC--c-hhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 77 VYEHLYFMALL-KL--D-RRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 77 v~e~l~~~~~~-~~--~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
+.+++.+.... .. . .........+.+.++++.+++. +..++.+. ..|||||||||+|||||+.+|++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------~~LS~G~~qrv~laral~~~p~il 167 (248)
T PRK09580 95 NQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN-------VGFSGGEKKRNDILQMAVLEPELC 167 (248)
T ss_pred HHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC-------CCCCHHHHHHHHHHHHHHcCCCEE
Confidence 77766543211 00 0 0011112234567888999985 34555421 259999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhh-cCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~ 218 (290)
||||||++||+.++..+.+.|++++ +.|.|||++||++ ..+... +|++++|++|++++.|+++.+
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tiii~sH~~-~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 168 ILDESDSGLDIDALKIVADGVNSLR-DGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999994 4589999999997 466666 899999999999999998854
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=346.13 Aligned_cols=201 Identities=22% Similarity=0.396 Sum_probs=168.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC---CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD---LFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~---~~~~~l 75 (290)
.|+||++.+||+++|+|||||||||||++|+|+++|. .+|+|.++|+++.. .+++.+||+||+. .+++.+
T Consensus 277 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 354 (500)
T TIGR02633 277 DDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPIL 354 (500)
T ss_pred ccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCC
Confidence 4799999999999999999999999999999999851 37999999998742 2456799999985 588999
Q ss_pred CHHHHHHHHHH--hcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 76 TVYEHLYFMAL--LKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 76 Tv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||++|+.++.. .............+.+.++++.+++.+ ..+++ +..|||||||||+|||||+.+|++||
T Consensus 355 tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGqkqrv~la~al~~~p~lll 426 (500)
T TIGR02633 355 GVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP--------IGRLSGGNQQKAVLAKMLLTNPRVLI 426 (500)
T ss_pred CHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc--------cccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 99999987532 110001111223355788999999964 56777 45599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
|||||+|||+.++..++++|+++++ .|.|||++|||+ .++.++||++++|++|+++..++.+
T Consensus 427 LDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999954 589999999997 5788999999999999999877554
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=316.13 Aligned_cols=202 Identities=22% Similarity=0.326 Sum_probs=166.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CCccEEEECCEecC---c-----cccccEEEEccCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVE---G-----KFRSACGFMYQHDLFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~--~~~G~I~i~G~~~~---~-----~~~~~ig~v~Q~~~~~~ 73 (290)
.|+||++++||+++|+||||||||||+++|+|+.+|.. .++|+|.++|.++. . .+++.++|++|++.+++
T Consensus 33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 112 (265)
T PRK14252 33 KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFP 112 (265)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCc
Confidence 58999999999999999999999999999999987521 14899999998753 1 24667999999988888
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC----CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
. ||+||+.++....... ......+.+.++++.+++. +..++. +..|||||||||+|||||+.+|+
T Consensus 113 ~-tv~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~qrv~laral~~~p~ 181 (265)
T PRK14252 113 K-SIFENVAYGLRIRGVK--RRSILEERVENALRNAALWDEVKDRLGDL--------AFNLSGGQQQRLCIARALATDPE 181 (265)
T ss_pred c-hHHHHHHhHHHHcCCC--hHHHHHHHHHHHHHHcCCchhhhHHHhCC--------cccCCHHHHHHHHHHHHHHcCCC
Confidence 5 9999998865432111 1111234466778888764 234455 45699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
++||||||+|||+.++..+.+.|++++ + +.|||++||++ .++.++||++++|++|+++..|+.+++.
T Consensus 182 llllDEPt~gLD~~~~~~l~~~l~~l~-~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 182 ILLFDEPTSALDPIATASIEELISDLK-N-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHH-h-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999994 4 58999999997 5788899999999999999999988653
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=358.64 Aligned_cols=192 Identities=29% Similarity=0.375 Sum_probs=164.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||.+||+||||||||||+|+|+|+++|. +|+|.+||+++.. .+|+.||||+|++.+|+. |++|
T Consensus 470 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~e 545 (686)
T TIGR03797 470 DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFE 545 (686)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999865 478899999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.. . + .+++.++++..++. +..++.+++. ...||||||||++|||||+++|++||
T Consensus 546 Ni~~~~~-~-----~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~----G~~LSGGQrQRialARAll~~p~iLi 611 (686)
T TIGR03797 546 NIAGGAP-L-----T----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG----GGTLSGGQRQRLLIARALVRKPRILL 611 (686)
T ss_pred HHhcCCC-C-----C----HHHHHHHHHHcCcHHHHHhccccccccccCC----CCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998632 1 1 12234455555543 3457777775 34699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+||+.+..++.+.|+++ ++|+|++||++ ...+.||+|++|++|+++..|+.++++
T Consensus 612 LDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 612 FDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred EeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999876 47999999997 346779999999999999999999765
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=321.48 Aligned_cols=194 Identities=23% Similarity=0.337 Sum_probs=162.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||.|++||+++|+||||||||||+++|+|++++ +|+|+++|.++.. .+++.++|+||++.+|+. ||++
T Consensus 21 ~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~----~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~ 95 (275)
T cd03289 21 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT----EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRK 95 (275)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCC----CcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHH
Confidence 589999999999999999999999999999999873 6999999998853 357789999999998874 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCccc-------CCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI-------GSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v-------~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.+... .. .+.+.++++.+||.+..++.+ ++. ...||||||||++|||||+.+|++||
T Consensus 96 nl~~~~~------~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~----g~~LS~G~~qrl~LaRall~~p~ill 161 (275)
T cd03289 96 NLDPYGK------WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG----GCVLSHGHKQLMCLARSVLSKAKILL 161 (275)
T ss_pred HhhhccC------CC----HHHHHHHHHHcCCHHHHHhCcccccceecCC----CCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9964211 11 123456777888876555542 221 23499999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||++||+.+...+.+.|+++ .. ++|||++||++ ..+. .||||++|++|++++.|++++++.
T Consensus 162 lDEpts~LD~~~~~~l~~~l~~~-~~-~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 162 LDEPSAHLDPITYQVIRKTLKQA-FA-DCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EECccccCCHHHHHHHHHHHHHh-cC-CCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 99999999999999999999987 43 79999999997 4554 599999999999999999998753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=351.66 Aligned_cols=203 Identities=29% Similarity=0.434 Sum_probs=169.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||.+||+||||||||||+++|+|+++|. +|+|.+||.++.. .+|+.|+||||++.+|. -||+|
T Consensus 346 ~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~ 421 (567)
T COG1132 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRE 421 (567)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHH
Confidence 4799999999999999999999999999999999994 8999999999975 47899999999999888 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.++..-....++.+..+...+.+.+.. +++..|+.+|+. ...||||||||++|||||+.+|++|+||||||+
T Consensus 422 NI~~g~~~at~eei~~a~k~a~~~d~I~~--lp~g~dt~vge~----G~~LSgGQrQrlaiARall~~~~ILILDEaTSa 495 (567)
T COG1132 422 NIALGRPDATDEEIEEALKLANAHEFIAN--LPDGYDTIVGER----GVNLSGGQRQRLAIARALLRNPPILILDEATSA 495 (567)
T ss_pred HHhcCCCCCCHHHHHHHHHHhChHHHHHh--CcccccceecCC----CccCCHHHHHHHHHHHHHhcCCCEEEEeccccc
Confidence 99997532211122222222223344443 356788999875 345999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+.+...+.+.++++ . +++|+|+++|+++ .+ ..||+|++|++|++++.|++++++.
T Consensus 496 lD~~tE~~I~~~l~~l-~-~~rT~iiIaHRls-ti-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 496 LDTETEALIQDALKKL-L-KGRTTLIIAHRLS-TI-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred cCHHhHHHHHHHHHHH-h-cCCEEEEEeccHh-HH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999988 3 4689999999984 44 4599999999999999999998764
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-43 Score=321.57 Aligned_cols=204 Identities=25% Similarity=0.378 Sum_probs=165.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCCccEEEECCEecCc------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD--CIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~--~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~l 75 (290)
.++||++.+||+++|+|||||||||||++|+|+++|. ...+|+|.++|.++.. .+++.++|+||++.+++ .
T Consensus 62 ~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~ 140 (305)
T PRK14264 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-K 140 (305)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-c
Confidence 4799999999999999999999999999999998621 0148999999998742 24568999999988887 5
Q ss_pred CHHHHHHHHHHhcCc----------hhhhHHHHHHHHHHHHHHcCCCC----ccCcccCCcCCCCCCCCChHHHHHHHHH
Q psy2520 76 TVYEHLYFMALLKLD----------RRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQKVVLSGGERKRLSFA 141 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~l~~----~~~~~v~~~~~~~~~~LSgGqrqRv~ia 141 (290)
||+||+.++...... .........+.+.++++.+++.+ ..++. +.+|||||||||+||
T Consensus 141 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgGq~qrv~LA 212 (305)
T PRK14264 141 SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDN--------ALGLSGGQQQRLCIA 212 (305)
T ss_pred cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCc--------cccCCHHHHHHHHHH
Confidence 999999986532110 00011122345778888888743 34555 556999999999999
Q ss_pred HHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE-EEEeCCeEEEEcCHHHHH
Q psy2520 142 TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI-ILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 142 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v-~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++||++ ..+..+||++ ++|++|+++..|+++++.
T Consensus 213 raL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~-~-~~tiiivtH~~-~~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 213 RCLAVDPEVILMDEPASALDPIATSKIEDLIEELA-E-EYTVVVVTHNM-QQAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCH-HHHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999994 4 48999999997 5788899996 578999999999988654
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=313.74 Aligned_cols=192 Identities=22% Similarity=0.267 Sum_probs=165.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+ +++++|+..+.+.+|+.+|+.+
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G~I~~~g~---------~~~~~~~~~~~~~~tv~enl~~ 108 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VGKVDRNGE---------VSVIAISAGLSGQLTGIENIEF 108 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCE---------EeEEecccCCCCCCcHHHHHHH
Confidence 4799999999999999999999999999999999984 799999985 4567787777788999999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....... ........+..+++.+++.+..++. +..|||||+|||+||+||+.+|++|||||||+|||+.
T Consensus 109 ~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~ 177 (264)
T PRK13546 109 KMLCMGF---KRKEIKAMTPKIIEFSELGEFIYQP--------VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQT 177 (264)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHcCCchhhcCC--------cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 6443221 1222334567788888998888877 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
++..+++.|.++ ++.|.|||++||++ .++..+||++++|++|+++..|+++++.+
T Consensus 178 ~~~~l~~~L~~~-~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 178 FAQKCLDKIYEF-KEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHHHHHHHHHH-HHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999 45689999999997 57888999999999999999999987654
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=315.06 Aligned_cols=186 Identities=27% Similarity=0.373 Sum_probs=158.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCC--CHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL--TVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~l--Tv~e~l 81 (290)
.++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|. ..++|+||++.+++.+ |+.+++
T Consensus 21 ~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~-------~~i~~v~q~~~~~~~l~~~~~~~~ 90 (251)
T PRK09544 21 SDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK-------LRIGYVPQKLYLDTTLPLTVNRFL 90 (251)
T ss_pred EeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc-------cCEEEeccccccccccChhHHHHH
Confidence 4799999999999999999999999999999999984 899999872 3699999998777653 777776
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.+.. ... .+.+.++++.+++.+..++. +..|||||||||+|||||+.+|++|||||||+|||
T Consensus 91 ~~~~------~~~----~~~~~~~l~~~gl~~~~~~~--------~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 152 (251)
T PRK09544 91 RLRP------GTK----KEDILPALKRVQAGHLIDAP--------MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152 (251)
T ss_pred hccc------ccc----HHHHHHHHHHcCChHHHhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 4321 011 13456789999998888887 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+++.|++++++.|.|||++||++ .++.++||++++|+ ++++..|+++++.
T Consensus 153 ~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 153 VNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 99999999999998544489999999997 57889999999996 4799999988654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=380.21 Aligned_cols=203 Identities=26% Similarity=0.338 Sum_probs=180.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||||.+++||++||+||||||||||+|+|+|+++|+ +|+|+++|+++.. ..++.|||+||++.+++.+||+|+
T Consensus 1956 ~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~ 2032 (2272)
T TIGR01257 1956 DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREH 2032 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHH
Confidence 4799999999999999999999999999999999995 8999999999853 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+.+.++.. ...+..+.++++++.++|.+..+++ ++.|||||||||+||+||+.+|+||||||||+||
T Consensus 2033 L~l~a~l~g~---~~~~~~~~v~~lLe~lgL~~~~dk~--------~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGL 2101 (2272)
T TIGR01257 2033 LYLYARLRGV---PAEEIEKVANWSIQSLGLSLYADRL--------AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGM 2101 (2272)
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHcCCHHHhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 9987765432 1223345678899999999988988 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 222 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 222 (290)
||.+++.++++|+++++ +|+|||++||++ +++..+|||+++|.+|+++..|+++++...+
T Consensus 2102 Dp~sr~~l~~lL~~l~~-~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2102 DPQARRMLWNTIVSIIR-EGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 99999999999999954 589999999997 5899999999999999999999999886544
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=291.67 Aligned_cols=198 Identities=26% Similarity=0.398 Sum_probs=175.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----------cccccEEEEccCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----------KFRSACGFMYQHDLFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----------~~~~~ig~v~Q~~~~~~ 73 (290)
.||+++.++||.+.++||||||||||++.|.-+..|. +|+..|-|....- .+|+++|+|||+-.++|
T Consensus 19 fdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwp 95 (242)
T COG4161 19 FDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWP 95 (242)
T ss_pred eeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCc
Confidence 5899999999999999999999999999999888884 8999998876531 37889999999999999
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
.+||.||+.-+...-. ..++.+...++.++++++.|.+++|+. +-.|||||+|||+|||||+++|.+|++
T Consensus 96 hltv~enlieap~kv~--gl~~~qa~~~a~ellkrlrl~~~adr~--------plhlsggqqqrvaiaralmmkpqvllf 165 (242)
T COG4161 96 HLTVQENLIEAPCRVL--GLSKDQALARAEKLLKRLRLKPYADRY--------PLHLSGGQQQRVAIARALMMEPQVLLF 165 (242)
T ss_pred hhHHHHHHHhhhHHHh--CCCHHHHHHHHHHHHHHhccccccccC--------ceecccchhhhHHHHHHHhcCCcEEee
Confidence 9999999976542211 234455667788999999999999998 667999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
||||++|||.-..++.++++++ ++.|.|-+++||.. +.+.+.+.+|+.|.+|+|+..|+..
T Consensus 166 deptaaldpeitaqvv~iikel-~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 166 DEPTAALDPEITAQIVSIIKEL-AETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred cCcccccCHHHHHHHHHHHHHH-HhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999 67799999999997 4778899999999999999999876
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=340.54 Aligned_cols=195 Identities=33% Similarity=0.457 Sum_probs=168.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++||++++|+.++|+|+||||||||+++|+|+.+| ++|+|.+||.++.+ .|+++++||+|+|.+|+. |++|
T Consensus 338 ~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~---~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-Tire 413 (559)
T COG4988 338 SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP---TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRE 413 (559)
T ss_pred CCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC---CCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHH
Confidence 579999999999999999999999999999999999 48999999998865 489999999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC------ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN------SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
|+.++..-. + .+.+.++++..++.+ -.|+.+|+. ...|||||+|||++||||+.+++++|+
T Consensus 414 Ni~l~~~~~-----s----~e~i~~al~~a~l~~~v~~p~GLdt~ige~----G~~LSgGQ~QRlaLARAll~~~~l~ll 480 (559)
T COG4988 414 NILLARPDA-----S----DEEIIAALDQAGLLEFVPKPDGLDTVIGEG----GAGLSGGQAQRLALARALLSPASLLLL 480 (559)
T ss_pred HhhccCCcC-----C----HHHHHHHHHHhcHHHhhcCCCcccchhccC----CCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 999864211 1 133456666666644 456677775 456999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||++||..+...|++.|.+++ + ++|+|++||++ ....-+|+|++|++|+++..|.++++.
T Consensus 481 DEpTA~LD~etE~~i~~~l~~l~-~-~ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 481 DEPTAHLDAETEQIILQALQELA-K-QKTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred cCCccCCCHhHHHHHHHHHHHHH-h-CCeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHHHHh
Confidence 99999999999999999999994 3 58999999996 356789999999999999999999764
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=305.37 Aligned_cols=204 Identities=26% Similarity=0.379 Sum_probs=183.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++|++|++|.+++|+|||||||||||.+++.+++.+ +|+|+++|.++.. .+.+.++.+-|+..+...+||+|
T Consensus 18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~d 94 (252)
T COG4604 18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRD 94 (252)
T ss_pred ccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHH
Confidence 5899999999999999999999999999999999885 8999999999865 47788999999998889999999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
-+.|+..-+..... ..+....++++++.++|.+..++.+ .+||||||||.-||+.|+++.+.++||||.++
T Consensus 95 Lv~FGRfPYSqGRl-t~eD~~~I~~aieyl~L~~l~dryL--------d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNN 165 (252)
T COG4604 95 LVGFGRFPYSQGRL-TKEDRRIINEAIEYLHLEDLSDRYL--------DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNN 165 (252)
T ss_pred HhhcCCCcccCCCC-chHHHHHHHHHHHHhcccchHHHhH--------HhcccchhhhhhhheeeeccCcEEEecCcccc
Confidence 99997533222222 2344567899999999999999994 45999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||.....++++.|++++++-|+||++|.||++ ++..++|.|+-|++|+++..|+++++++
T Consensus 166 LDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 166 LDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 99999999999999998888999999999985 8899999999999999999999998874
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=350.56 Aligned_cols=196 Identities=27% Similarity=0.379 Sum_probs=165.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+|+++++||.++|+||||||||||+++|+|+++|+ +|+|.+||.++.. .+++.|+|+||++.+|+ -|++|
T Consensus 360 ~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~ 435 (582)
T PRK11176 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIAN 435 (582)
T ss_pred cCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHH
Confidence 5899999999999999999999999999999999994 7999999999864 46788999999998887 49999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++..- ..+ .+++.++++..+ +.+..++.+|+. ...||||||||++|||||+++|++||
T Consensus 436 Ni~~~~~~----~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~----g~~LSGGqrQRi~LARall~~~~ili 503 (582)
T PRK11176 436 NIAYARTE----QYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN----GVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_pred HHhcCCCC----CCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC----CCcCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99875311 011 122344444444 344567778775 34599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...+++.|+++ .+ ++|+|+|||++ ...+.||+|++|++|+++..|+.++++
T Consensus 504 lDEptsaLD~~t~~~i~~~l~~~-~~-~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 504 LDEATSALDTESERAIQAALDEL-QK-NRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred EECccccCCHHHHHHHHHHHHHH-hC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999998 43 68999999997 356789999999999999999998765
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=297.87 Aligned_cols=154 Identities=34% Similarity=0.575 Sum_probs=140.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.++|+||++.+++.+|+.||
T Consensus 17 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (173)
T cd03230 17 DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVREN 93 (173)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHH
Confidence 4799999999999999999999999999999999884 8999999998753 356789999999988888999988
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+. ||||||||++|||||+.+|+++||||||++|
T Consensus 94 ~~-----------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 94 LK-----------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred hh-----------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 63 6999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
|+.++..+.+.|++++++ |.|+|++||++ .++..+||++++|++|++
T Consensus 127 D~~~~~~l~~~l~~~~~~-g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 127 DPESRREFWELLRELKKE-GKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 999999999999999544 89999999997 478889999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=335.75 Aligned_cols=198 Identities=27% Similarity=0.372 Sum_probs=176.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.||||++.+||++||+|.||||||||+|+|+|.++|+ +|+|+++|++... .....|+.|+|+..++|+|||.
T Consensus 25 ~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVa 101 (500)
T COG1129 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVA 101 (500)
T ss_pred ccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHH
Confidence 5899999999999999999999999999999999995 8999999999853 2456799999999999999999
Q ss_pred HHHHHHHHhcC-chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
||+.++..... ...+......+++.++|+.+++....+.+++ +||.||||.|+|||||..+++||||||||
T Consensus 102 eNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~--------~LsiaqrQ~VeIArAl~~~arllIlDEPT 173 (500)
T COG1129 102 ENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG--------DLSIAQRQMVEIARALSFDARVLILDEPT 173 (500)
T ss_pred HHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh--------hCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99998765433 2334455556778899999999655777754 49999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
|+|+......++++++++ +++|.+||++||.+ ++++++|||+.+|.+|+++...+
T Consensus 174 aaLt~~E~~~Lf~~ir~L-k~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 174 AALTVKETERLFDLIRRL-KAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred ccCCHHHHHHHHHHHHHH-HhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999 56799999999997 58999999999999999998777
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=309.80 Aligned_cols=185 Identities=26% Similarity=0.323 Sum_probs=153.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+.+|+ +|+|.++|.++.. .+++.++|+||++.+++ .||+|
T Consensus 21 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~e 96 (221)
T cd03244 21 KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRS 96 (221)
T ss_pred cceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHH
Confidence 4899999999999999999999999999999999984 8999999998753 35678999999988776 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCcc-----------CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-----------HTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
|+.+... . .. +.+.++++.+++.+.. ++. +..||+|||||++|||||+.+|
T Consensus 97 nl~~~~~--~----~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~--------~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 97 NLDPFGE--Y----SD----EELWQALERVGLKEFVESLPGGLDTVVEEG--------GENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred HhCcCCC--C----CH----HHHHHHHHHhCcHHHHHhcccccccccccC--------CCcCCHHHHHHHHHHHHHhcCC
Confidence 9875321 1 11 1233445555554332 333 5669999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
+++||||||+|||+.++..+.+.|+++ ++ +.|||++||++ .++. .||++++|++|+++..|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREA-FK-DCTVLTIAHRL-DTII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHh-cC-CCEEEEEeCCH-HHHh-hCCEEEEEECCeEEecCC
Confidence 999999999999999999999999998 44 68999999997 4564 599999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=308.08 Aligned_cols=186 Identities=26% Similarity=0.348 Sum_probs=154.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEEC--CE--ecCc-------cc-cccEEEEccCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVN--GK--PVEG-------KF-RSACGFMYQHDLF 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~--G~--~~~~-------~~-~~~ig~v~Q~~~~ 71 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++ |. ++.. .+ ++.++|+||++.+
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 5799999999999999999999999999999999984 7999998 43 4321 11 3579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCe
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~l 150 (290)
++.+||.||+.+....... ......+.+.++++.+++.+. .++. +.+||||||||++|||||+.+|++
T Consensus 102 ~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LS~G~~qrl~laral~~~p~l 170 (224)
T TIGR02324 102 IPRVSALEVVAEPLLERGV---PREAARARARELLARLNIPERLWHLP--------PATFSGGEQQRVNIARGFIADYPI 170 (224)
T ss_pred CCCccHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchhhhhCC--------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999875433211 112233456789999999764 4666 456999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
+||||||+|||+.++..+.+.|++++ ++|.|||++||++ ..+..+||+++.+.
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 171 LLLDEPTASLDAANRQVVVELIAEAK-ARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 99999999999999999999999994 4589999999996 46778999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=300.08 Aligned_cols=158 Identities=30% Similarity=0.522 Sum_probs=142.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC---CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD---LFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~---~~~~~l 75 (290)
.++||++++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.++|+||++ .+++.+
T Consensus 17 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 17 RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 4899999999999999999999999999999999984 8999999998753 2456899999984 578889
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|++||+.+... ||||||||++|||||+.+|++|||||
T Consensus 94 t~~e~l~~~~~-------------------------------------------LS~G~~qrl~la~al~~~p~llllDE 130 (182)
T cd03215 94 SVAENIALSSL-------------------------------------------LSGGNQQKVVLARWLARDPRVLILDE 130 (182)
T ss_pred cHHHHHHHHhh-------------------------------------------cCHHHHHHHHHHHHHccCCCEEEECC
Confidence 99999876320 79999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
||+|||+.++..+.+.|++++ +.|.|+|++||++ .++.++||++++|++|++
T Consensus 131 P~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 131 PTRGVDVGAKAEIYRLIRELA-DAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCcCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 999999999999999999994 4589999999997 578899999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=349.12 Aligned_cols=194 Identities=23% Similarity=0.342 Sum_probs=166.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||.+||+|+||||||||+++|+|+++|. +|+|.+||.++.. .+++.|+||+|++.+|+. |+++
T Consensus 358 ~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~ 433 (592)
T PRK10790 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLA 433 (592)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHH
Confidence 4899999999999999999999999999999999995 7999999999864 478999999999999986 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++. .. + .+++.++++.+|+. +..|+.+++. ...||||||||++|||||+.+|++||
T Consensus 434 NI~~~~-~~-----~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~----g~~LSGGqrQRialARaLl~~~~ill 499 (592)
T PRK10790 434 NVTLGR-DI-----S----EEQVWQALETVQLAELARSLPDGLYTPLGEQ----GNNLSVGQKQLLALARVLVQTPQILI 499 (592)
T ss_pred HHHhCC-CC-----C----HHHHHHHHHHcCcHHHHHhccccccccccCC----CCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999863 11 1 12245556665543 4457777764 34599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...+.+.|+++ .. ++|+|++||++ .....||+|++|++|+++..|++++++
T Consensus 500 lDEpts~LD~~t~~~i~~~l~~~-~~-~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 500 LDEATANIDSGTEQAIQQALAAV-RE-HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred EeCCcccCCHHHHHHHHHHHHHH-hC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999998 33 68999999997 356779999999999999999999775
|
|
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=345.60 Aligned_cols=203 Identities=26% Similarity=0.423 Sum_probs=174.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||+++|||++||+||||+||||+.++|-.++.|+ +|+|.+||.|+.+ .+|++||+|.|+|.+|.. ||+|
T Consensus 485 k~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~e 560 (716)
T KOG0058|consen 485 KNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRE 560 (716)
T ss_pred cCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHH
Confidence 5899999999999999999999999999999999994 8999999999975 478999999999999875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
||.|+........+....+.+.+.+.+. ++++.+++.+|+.+. +||||||||+||||||++||.||||||.||+
T Consensus 561 NI~YG~~~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~----qLSGGQKQRIAIARALlr~P~VLILDEATSA 634 (716)
T KOG0058|consen 561 NIAYGLDNATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGS----QLSGGQKQRIAIARALLRNPRVLILDEATSA 634 (716)
T ss_pred HHhcCCCCCCHHHHHHHHHHhChHHHHH--hCccccccccCCccc----cccchHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 9999876322222222223333444443 567889999999644 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||..+...+.+.|.++.+ ++|||++.|.++ ..+.+|+|+++++|+++..|+.++++.
T Consensus 635 LDaeSE~lVq~aL~~~~~--~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 635 LDAESEYLVQEALDRLMQ--GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred cchhhHHHHHHHHHHhhc--CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999999999998843 599999999973 578899999999999999999998763
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=343.46 Aligned_cols=192 Identities=25% Similarity=0.298 Sum_probs=164.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCC--C-C---
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLF--S-P--- 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~--~-~--- 73 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.. .+++.++|++|++.+ + +
T Consensus 20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 96 (490)
T PRK10938 20 QLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGED 96 (490)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhcccchh
Confidence 5899999999999999999999999999999999984 7999999987642 234569999998542 1 1
Q ss_pred --CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 74 --SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 74 --~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
.+||++++.+.. ...+++.++++.++|.+..+++ +.+|||||||||+||+||+.+|++|
T Consensus 97 ~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~ll 157 (490)
T PRK10938 97 DTGRTTAEIIQDEV-----------KDPARCEQLAQQFGITALLDRR--------FKYLSTGETRKTLLCQALMSEPDLL 157 (490)
T ss_pred hccccHHHhcccch-----------hHHHHHHHHHHHcCCHhhhhCC--------cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 468888765320 1124567899999998888888 4559999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+|||+.++..++++|+++++ .|.|||++||++ .++.++||++++|++|+++..|+++++.
T Consensus 158 lLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 158 ILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999954 589999999997 5788999999999999999999987654
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=357.47 Aligned_cols=194 Identities=25% Similarity=0.333 Sum_probs=163.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||.+||+||||||||||+++|+|+++|+ +|+|.+||.++.. .+|+.||||+|++.+|+ .|++|
T Consensus 496 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~e 571 (710)
T TIGR03796 496 ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-GTVRD 571 (710)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-ccHHH
Confidence 4899999999999999999999999999999999994 8999999999864 47899999999998886 49999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++..- .+. +++.++++..++ .+..++.+++. ...||||||||++|||||+++|++||
T Consensus 572 Ni~l~~~~-----~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~----G~~LSGGQrQRiaLARall~~p~ili 638 (710)
T TIGR03796 572 NLTLWDPT-----IPD----ADLVRACKDAAIHDVITSRPGGYDAELAEG----GANLSGGQRQRLEIARALVRNPSILI 638 (710)
T ss_pred HhhCCCCC-----CCH----HHHHHHHHHhCCHHHHHhCcCcccceeccC----CCCCCHHHHHHHHHHHHHhhCCCEEE
Confidence 99875211 111 223344444444 33457777775 34699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||||+||+.+..++++.|++ .++|+|++||++. ....||+|++|++|+++..|+.+++++
T Consensus 639 LDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 639 LDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999975 3789999999973 457799999999999999999997753
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=314.09 Aligned_cols=199 Identities=21% Similarity=0.268 Sum_probs=158.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+|+||||||||+++|+|+++|. +|+|+++|+++.. .+++.++|++|++.+++ .|++|
T Consensus 38 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~ 113 (257)
T cd03288 38 KHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIRF 113 (257)
T ss_pred eEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHHH
Confidence 4799999999999999999999999999999999884 8999999998753 35678999999988776 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+...... .............+.++++.+ ++....+.. +..||+|||||++|||||+.+|++|||||||
T Consensus 114 nl~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~--------~~~LS~G~~qrl~laral~~~p~llllDEPt 184 (257)
T cd03288 114 NLDPECKC-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEG--------GENFSVGQRQLFCLARAFVRKSSILIMDEAT 184 (257)
T ss_pred hcCcCCCC-CHHHHHHHHHHhCcHHHHhhcccccCcEeccC--------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 98542100 000000000111233444444 454444444 4569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+++.|+++ .+ +.|||++||++. .+. .||++++|++|+++..|+++++.
T Consensus 185 ~gLD~~~~~~l~~~l~~~-~~-~~tiii~sh~~~-~~~-~~dri~~l~~G~i~~~g~~~~~~ 242 (257)
T cd03288 185 ASIDMATENILQKVVMTA-FA-DRTVVTIAHRVS-TIL-DADLVLVLSRGILVECDTPENLL 242 (257)
T ss_pred cCCCHHHHHHHHHHHHHh-cC-CCEEEEEecChH-HHH-hCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999997 44 799999999974 555 59999999999999999988654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=376.43 Aligned_cols=200 Identities=28% Similarity=0.410 Sum_probs=179.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++.+||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.+||+||++.+++.+||+||
T Consensus 947 ~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~ 1023 (2272)
T TIGR01257 947 DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEH 1023 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHH
Confidence 4799999999999999999999999999999999994 8999999999854 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.|.+..+... ..+..+++.++++.+||.+..++. +.+|||||||||+||+||+.+|++|||||||+||
T Consensus 1024 L~f~~~lkg~~---~~~~~~~v~~lL~~vgL~~~~~~~--------~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGL 1092 (2272)
T TIGR01257 1024 ILFYAQLKGRS---WEEAQLEMEAMLEDTGLHHKRNEE--------AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGV 1092 (2272)
T ss_pred HHHHHHhcCCC---HHHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCC
Confidence 99987654321 223345678999999999988888 5559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+.++..++++|+++ ++ |+|||++||++ +++..+|||+++|++|+++..|++..+.+
T Consensus 1093 Dp~sr~~l~~lL~~l-~~-g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1093 DPYSRRSIWDLLLKY-RS-GRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred CHHHHHHHHHHHHHH-hC-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999 44 89999999997 57888999999999999999999987764
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=302.33 Aligned_cols=170 Identities=26% Similarity=0.323 Sum_probs=146.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~--~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+. +| .+|+|.++|+++.. . .+..++|+||++.+++.+|
T Consensus 17 ~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (200)
T cd03217 17 KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVK 93 (200)
T ss_pred eccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCcc
Confidence 4899999999999999999999999999999994 56 48999999998854 1 2345999999988888888
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+.+++. .. ...||||||||++|||||+.+|+++|||||
T Consensus 94 ~~~~l~----------------------------------~~--------~~~LS~G~~qrv~laral~~~p~illlDEP 131 (200)
T cd03217 94 NADFLR----------------------------------YV--------NEGFSGGEKKRNEILQLLLLEPDLAILDEP 131 (200)
T ss_pred HHHHHh----------------------------------hc--------cccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 877650 00 123999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHh-hcCeEEEEeCCeEEEEcCHHHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADSRTAFIGSKDAALAF 221 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 221 (290)
|++||+.++..+.+.|++++ +++.|||++||++ ..+.. +||++++|++|++++.|+.+ +...
T Consensus 132 t~~LD~~~~~~l~~~L~~~~-~~~~tiii~sh~~-~~~~~~~~d~i~~l~~G~i~~~~~~~-~~~~ 194 (200)
T cd03217 132 DSGLDIDALRLVAEVINKLR-EEGKSVLIITHYQ-RLLDYIKPDRVHVLYDGRIVKSGDKE-LALE 194 (200)
T ss_pred CccCCHHHHHHHHHHHHHHH-HCCCEEEEEecCH-HHHHHhhCCEEEEEECCEEEEEccHH-HHhh
Confidence 99999999999999999994 4589999999997 46666 79999999999999999544 4433
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=302.11 Aligned_cols=178 Identities=28% Similarity=0.349 Sum_probs=152.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.++|++|++.+++.+||.||
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALEN 93 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHH
Confidence 4799999999999999999999999999999999984 8999999998753 245789999999888888999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+...... .. .+.+.++++.+++.+..++. +..|||||||||+|||||+.+|+++||||||+||
T Consensus 94 l~~~~~~~~----~~---~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 158 (198)
T TIGR01189 94 LHFWAAIHG----GA---QRTIEDALAAVGLTGFEDLP--------AAQLSAGQQRRLALARLWLSRAPLWILDEPTTAL 158 (198)
T ss_pred HHHHHHHcC----Cc---HHHHHHHHHHcCCHHHhcCC--------hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 988654321 11 23467889999998888887 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
|+.++..+.+.|++++ +.|.|||++||++. .-.+++++.
T Consensus 159 D~~~~~~l~~~l~~~~-~~~~tii~~sH~~~---~~~~~~~~~ 197 (198)
T TIGR01189 159 DKAGVALLAGLLRAHL-ARGGIVLLTTHQDL---GLVEARELR 197 (198)
T ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEEEcccc---cccceEEee
Confidence 9999999999999984 45899999999974 234677654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=303.38 Aligned_cols=179 Identities=26% Similarity=0.349 Sum_probs=149.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||.+.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+++.++|+||++.+++ .||+|
T Consensus 25 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~ 100 (207)
T cd03369 25 KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRS 100 (207)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHH
Confidence 4899999999999999999999999999999999984 8999999998743 24678999999988776 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.+... ... +.+.++++ .++. +..|||||+||++|||||+.+|+++||||||+|
T Consensus 101 ~l~~~~~------~~~----~~~~~~l~-------~~~~--------~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 155 (207)
T cd03369 101 NLDPFDE------YSD----EEIYGALR-------VSEG--------GLNLSQGQRQLLCLARALLKRPRVLVLDEATAS 155 (207)
T ss_pred HhcccCC------CCH----HHHHHHhh-------ccCC--------CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 9975321 111 11233333 2333 456999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 215 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~ 215 (290)
||+.++..+++.|+++ .+ |.|+|++||++. ++. .||++++|++|+++..|++
T Consensus 156 LD~~~~~~l~~~l~~~-~~-~~tiii~th~~~-~~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 156 IDYATDALIQKTIREE-FT-NSTILTIAHRLR-TII-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCHHHHHHHHHHHHHh-cC-CCEEEEEeCCHH-HHh-hCCEEEEEECCEEEecCCC
Confidence 9999999999999998 44 899999999974 555 4999999999999887753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=354.33 Aligned_cols=197 Identities=28% Similarity=0.412 Sum_probs=166.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||.+||+||||||||||+++|+|+++|. +|+|.+||.++.. .+|+.++||+|++.+|+. |++|
T Consensus 482 ~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~e 557 (694)
T TIGR03375 482 DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRD 557 (694)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHH
Confidence 4899999999999999999999999999999999994 8999999999864 478899999999988875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++.... +. +++.++++..+ +.+..++.+++. ...||||||||++|||||+.+|+++|
T Consensus 558 Ni~~~~~~~-----~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~----G~~LSgGQrQRlalARall~~p~ili 624 (694)
T TIGR03375 558 NIALGAPYA-----DD----EEILRAAELAGVTEFVRRHPDGLDMQIGER----GRSLSGGQRQAVALARALLRDPPILL 624 (694)
T ss_pred HHhCCCCCC-----CH----HHHHHHHHHcChHHHHHhCcccccceecCC----CCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998753211 11 12233344433 344567777775 34599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 221 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 221 (290)
||||||+||+.+...+.+.|.++ .+ ++|+|++||+++ ..+.||+|++|++|+++..|+.+++++.
T Consensus 625 LDE~Ts~LD~~te~~i~~~l~~~-~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 625 LDEPTSAMDNRSEERFKDRLKRW-LA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHH-hC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999998 33 799999999973 5688999999999999999999987653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=297.84 Aligned_cols=156 Identities=32% Similarity=0.550 Sum_probs=140.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------cccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~~~~~lTv 77 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|++|++.+++.+|+
T Consensus 17 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (178)
T cd03229 17 NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTV 93 (178)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCH
Confidence 4789999999999999999999999999999999984 8999999998742 245789999999888888999
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
+||+.+. ||||||||++|||||+.+|+++||||||
T Consensus 94 ~~~l~~~---------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 94 LENIALG---------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred HHheeec---------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 8886531 6999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
+|||+.++..++++|++++++.|.|+|++||++ .++..+||++++|++|+
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 999999999999999999554479999999997 57778999999999884
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=343.04 Aligned_cols=203 Identities=31% Similarity=0.494 Sum_probs=163.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.++|+||||||||||+++|+|+++|. +|+|.++|.++.. .+++.++|++|++.+|+. |++|
T Consensus 335 ~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~ 410 (544)
T TIGR01842 335 RGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAE 410 (544)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999864 367899999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.++.............+...+.++++.+ .+..++.+++. ...||||||||++|||||+++|++|||||||++
T Consensus 411 Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~----g~~LSgGq~qrl~lARall~~~~ililDEpts~ 484 (544)
T TIGR01842 411 NIARFGENADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPG----GATLSGGQRQRIALARALYGDPKLVVLDEPNSN 484 (544)
T ss_pred HHhccCCCCCHHHHHHHHHHhChHHHHHhC--ccccccccCCC----cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 998543111101111111111233444443 23345555553 456999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+.++..+.+.|+++ ...|+|+|++||++. ..+.||++++|++|+++..|+++++.
T Consensus 485 LD~~~~~~i~~~l~~~-~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 485 LDEEGEQALANAIKAL-KARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred cCHHHHHHHHHHHHHH-hhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999998 445799999999973 46789999999999999999988764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=301.90 Aligned_cols=181 Identities=26% Similarity=0.418 Sum_probs=154.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++.. .+++.++|++|++.+++.+||.||+.
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~ 95 (207)
T PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLE 95 (207)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHH
Confidence 5899999999999999999999999999999999884 8999999988642 25677999999888888999999998
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+....... . .+.+.++++.+++.+..+++ +..||||||||++|||||+.+|+++||||||+|||+
T Consensus 96 ~~~~~~~~---~----~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 160 (207)
T PRK13539 96 FWAAFLGG---E----ELDIAAALEAVGLAPLAHLP--------FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160 (207)
T ss_pred HHHHhcCC---c----HHHHHHHHHHcCCHHHHcCC--------hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 76543211 1 12367899999998777777 455999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
.++..+++.|+++++ +|.|||++||++ .++.. |+++.+..
T Consensus 161 ~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 161 AAVALFAELIRAHLA-QGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 999999999999844 589999999997 45554 88887743
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=327.44 Aligned_cols=199 Identities=29% Similarity=0.407 Sum_probs=178.0
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCH
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv 77 (290)
-.+|||++.+||+.||+|.||||||||+++|.|+++|+ +|+|+++|+++.- ..+..||+|+|+..+++++||
T Consensus 20 nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV 96 (501)
T COG3845 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTV 96 (501)
T ss_pred cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeeccccccccch
Confidence 36899999999999999999999999999999999995 8999999999853 367789999999999999999
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
.||+.++............+..+++.++.+.+||.-..+.++++ ||-||||||.|.++|.++|++|||||||
T Consensus 97 ~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~d--------LsVG~qQRVEIlKaLyr~a~iLILDEPT 168 (501)
T COG3845 97 AENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD--------LSVGEQQRVEILKALYRGARLLILDEPT 168 (501)
T ss_pred hhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeec--------CCcchhHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999986532222334556667889999999999888988554 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
+-|-|....+++++|+++ ++.|+|||++||.+ .|+.++|||+.+|..|+++...+
T Consensus 169 aVLTP~E~~~lf~~l~~l-~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 169 AVLTPQEADELFEILRRL-AAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred ccCCHHHHHHHHHHHHHH-HHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999 45699999999998 58999999999999999876544
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=298.39 Aligned_cols=161 Identities=35% Similarity=0.527 Sum_probs=139.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.++|+||
T Consensus 16 ~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~i~~~~q------------ 80 (180)
T cd03214 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELARKIAYVPQ------------ 80 (180)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHHHHHHhHHHH------------
Confidence 4799999999999999999999999999999999984 8999999998753 23456777777
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
+++.+++.+..++. +..||||||||++|||||+.+|+++||||||++
T Consensus 81 -------------------------~l~~~gl~~~~~~~--------~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 81 -------------------------ALELLGLAHLADRP--------FNELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred -------------------------HHHHcCCHhHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 45566666655665 455999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
||+.++..+.+.|++++++.|.|+|++||++ .++.++||++++|++|+++..|
T Consensus 128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 128 LDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999543378999999997 4778999999999999987643
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=307.15 Aligned_cols=187 Identities=21% Similarity=0.249 Sum_probs=155.6
Q ss_pred cceEEEEe-----CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAAL-----SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~-----~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.++++++. +||+++|+||||||||||+++|+|+++|+ +|+|.++|+ .++|++|+...++.+||.
T Consensus 11 ~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~--------~i~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 11 GEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD--------TVSYKPQYIKADYEGTVR 79 (246)
T ss_pred CcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc--------eEEEecccccCCCCCCHH
Confidence 36777776 79999999999999999999999999984 799999985 499999998777789999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|++.+....... ....+.++++.+++.+..++. +..|||||||||+||+||+.+|+++||||||+
T Consensus 80 e~l~~~~~~~~~-------~~~~~~~~l~~l~l~~~~~~~--------~~~LSgGe~qrv~iaraL~~~p~llllDEPt~ 144 (246)
T cd03237 80 DLLSSITKDFYT-------HPYFKTEIAKPLQIEQILDRE--------VPELSGGELQRVAIAACLSKDADIYLLDEPSA 144 (246)
T ss_pred HHHHHHhhhccc-------cHHHHHHHHHHcCCHHHhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 998764322110 012346788899998888887 45599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE--EEcCHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA--FIGSKDA 217 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~--~~g~~~~ 217 (290)
+||+.++..+.++|++++++.|+|||++||++ .++..+||++++|+++..+ ..+++.+
T Consensus 145 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 145 YLDVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 99999999999999999655689999999997 5788899999999765433 3455544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=353.51 Aligned_cols=195 Identities=27% Similarity=0.378 Sum_probs=164.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.+||+||||||||||+++|+|+++|+ +|+|++||.++.. .+|+.||||+|++.+|+. |++|
T Consensus 491 ~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~e 566 (708)
T TIGR01193 491 SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILE 566 (708)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHH
Confidence 4899999999999999999999999999999999994 8999999999864 478899999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++.... .+. +++.++++..++ ....++.+++. ...||||||||++|||||+++|++||
T Consensus 567 Ni~l~~~~~----~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~----G~~LSgGQrQRialARall~~p~ili 634 (708)
T TIGR01193 567 NLLLGAKEN----VSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE----GSSISGGQKQRIALARALLTDSKVLI 634 (708)
T ss_pred HHhccCCCC----CCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC----CCCCCHHHHHHHHHHHHHhhCCCEEE
Confidence 999863111 111 122334444333 34567777774 35699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...+++.|+++ +|+|+|++||+++ ..+.||+|++|++|+++..|+.++++
T Consensus 635 LDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~ 696 (708)
T TIGR01193 635 LDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELL 696 (708)
T ss_pred EeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999875 3689999999973 56789999999999999999999765
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=300.87 Aligned_cols=177 Identities=23% Similarity=0.303 Sum_probs=151.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|+++|+++.. .+++.++|++|+..+++.+||.||
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 94 (200)
T PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLREN 94 (200)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHH
Confidence 4799999999999999999999999999999999984 8999999998753 356789999999888889999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.+..... . . ...+.++++.+++.+..++. +..|||||+||++|||||+.+|++|||||||+||
T Consensus 95 ~~~~~~~~--~--~----~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~~rv~laral~~~p~~lilDEP~~~L 158 (200)
T PRK13540 95 CLYDIHFS--P--G----AVGITELCRLFSLEHLIDYP--------CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL 158 (200)
T ss_pred HHHHHhcC--c--c----hHHHHHHHHHcCCchhhhCC--------hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 98864221 1 1 13467899999998777777 4459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEE
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 202 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~ 202 (290)
|+.++..+.+.|++++ +.|.|||++||++. ..+.+|...
T Consensus 159 D~~~~~~l~~~l~~~~-~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 159 DELSLLTIITKIQEHR-AKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred CHHHHHHHHHHHHHHH-HcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999984 45899999999963 446677654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=318.80 Aligned_cols=202 Identities=26% Similarity=0.435 Sum_probs=183.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCC--CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~--~~~~~ 74 (290)
++|||++++||.++|+|.||||||||-.+|.+++++ +|+|.|+|+++.. .+|+.+-.||||| .+-|.
T Consensus 304 d~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 304 DGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred ccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 589999999999999999999999999999999987 5999999999964 2678899999997 68899
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+||.+-+.-+...+.+ ..+..++.+++.++|+.+||.. ..+++ +.++|||||||++||||++.+|++++|
T Consensus 380 mtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY--------PhEFSGGQRQRIAIARAliLkP~~i~L 450 (534)
T COG4172 380 MTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY--------PHEFSGGQRQRIAIARALILKPELILL 450 (534)
T ss_pred cCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC--------CcccCcchhhHHHHHHHHhcCCcEEEe
Confidence 9999999988876653 3467788889999999999964 56777 566999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+||..-+.+++++|+++.++.|.+-+++|||+ ..+..+||+|++|.+|+||+.|+.++++
T Consensus 451 DEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 451 DEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred cCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 9999999999999999999999888899999999997 5788899999999999999999999776
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=345.27 Aligned_cols=195 Identities=31% Similarity=0.487 Sum_probs=167.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.++|+||||||||||+++|+|+++|+ +|+|++||.++.. .+|+.++||+|++.+|+. |++|
T Consensus 357 ~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ 432 (574)
T PRK11160 357 KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRD 432 (574)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHH
Confidence 5899999999999999999999999999999999994 8999999999864 478899999999988874 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc------cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS------QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
|+.++... .+ .+.+.++++.+++.++ .|+.+|+. ...||||||||++|||||+++|++|||
T Consensus 433 Ni~~~~~~-----~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~----g~~LSgGqrqRialARall~~~~ilil 499 (574)
T PRK11160 433 NLLLAAPN-----AS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG----GRQLSGGEQRRLGIARALLHDAPLLLL 499 (574)
T ss_pred HhhcCCCc-----cC----HHHHHHHHHHcCCHHHHcCccccCchhcCC----CCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99886321 11 2335667777777543 56667764 456999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||++||+.+...+.+.|.++ . +++|+|++||++. . ...||++++|++|+++..|+.++++
T Consensus 500 DE~ts~lD~~t~~~i~~~l~~~-~-~~~tviiitHr~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 500 DEPTEGLDAETERQILELLAEH-A-QNKTVLMITHRLT-G-LEQFDRICVMDNGQIIEQGTHQELL 561 (574)
T ss_pred eCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEecChh-H-HHhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999999998 4 3799999999974 4 4679999999999999999998765
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=293.86 Aligned_cols=151 Identities=30% Similarity=0.496 Sum_probs=136.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++||++++||+++|+|||||||||||++|+|+++|. +|+|.++|+++.. .+++.++|++|++.+++ .||+|
T Consensus 19 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 94 (173)
T cd03246 19 RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-GSIAE 94 (173)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHHHhheEEECCCCcccc-CcHHH
Confidence 4799999999999999999999999999999999984 8999999998753 35678999999988777 48988
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+ ||||||||++|||||+.+|++|||||||++
T Consensus 95 ~l------------------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~ 126 (173)
T cd03246 95 NI------------------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSH 126 (173)
T ss_pred HC------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 76 599999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
||+.++..+++.|++++ ++|+|||++||++ ..+ .+||++++|++|++
T Consensus 127 LD~~~~~~l~~~l~~~~-~~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 127 LDVEGERALNQAIAALK-AAGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 99999999999999994 4589999999997 455 68999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=357.53 Aligned_cols=203 Identities=25% Similarity=0.414 Sum_probs=169.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||.+++|+.+||+|||||||||++++|.+++.|+ +|+|++||.++.. .+|.+||.|+|+|.+|. .|++|
T Consensus 370 ~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~tI~e 445 (1228)
T KOG0055|consen 370 KGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRE 445 (1228)
T ss_pred CCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhhc-ccHHH
Confidence 3799999999999999999999999999999999995 8999999999865 47889999999997765 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.|+..-.....+.+..+...+.+.+. .|.+..++.+|+.+. +|||||||||+|||||+.+|+|||||||||+
T Consensus 446 NI~~G~~dat~~~i~~a~k~ana~~fi~--~lp~g~~T~vge~g~----qLSGGQKQRIAIARalv~~P~ILLLDEaTSa 519 (1228)
T KOG0055|consen 446 NIRYGKPDATREEIEEAAKAANAHDFIL--KLPDGYDTLVGERGV----QLSGGQKQRIAIARALVRNPKILLLDEATSA 519 (1228)
T ss_pred HHhcCCCcccHHHHHHHHHHccHHHHHH--hhHHhhcccccCCCC----CCChHHHHHHHHHHHHHhCCCEEEecCcccc
Confidence 9999753221112222222222233332 456778889998643 5999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+.+...+.+.|.+. . .|+|.|+|+|+++ .+ +.+|+|++|++|++++.|+++|++.
T Consensus 520 LD~~se~~Vq~ALd~~-~-~grTTivVaHRLS-tI-rnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 520 LDAESERVVQEALDKA-S-KGRTTIVVAHRLS-TI-RNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred cCHHHHHHHHHHHHHh-h-cCCeEEEEeeehh-hh-hccCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999998 4 4889999999974 45 5599999999999999999999874
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=343.42 Aligned_cols=195 Identities=26% Similarity=0.382 Sum_probs=163.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++.. .+++.|+||+|++.+|+. |++|
T Consensus 352 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~ 427 (588)
T PRK13657 352 EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIED 427 (588)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHH
Confidence 5899999999999999999999999999999999994 8999999999864 478899999999988864 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++..- ... +++.++++.+++ ++..++.+++. ...||||||||++|||||+.+|+++|
T Consensus 428 Ni~~~~~~-----~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~----g~~LSgGq~QRialARall~~~~ili 494 (588)
T PRK13657 428 NIRVGRPD-----ATD----EEMRAAAERAQAHDFIERKPDGYDTVVGER----GRQLSGGERQRLAIARALLKDPPILI 494 (588)
T ss_pred HHhcCCCC-----CCH----HHHHHHHHHhCHHHHHHhCcccccchhcCC----CCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99885211 111 112334444443 33456666664 34599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...+++.|+++ . +++|+|++||++ ...+.||++++|++|+++..|+.++++
T Consensus 495 LDEpts~LD~~t~~~i~~~l~~~-~-~~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 495 LDEATSALDVETEAKVKAALDEL-M-KGRTTFIIAHRL--STVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred EeCCccCCCHHHHHHHHHHHHHH-h-cCCEEEEEEecH--HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999987 3 379999999997 356789999999999999999998764
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=351.86 Aligned_cols=194 Identities=26% Similarity=0.356 Sum_probs=161.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||+++|||.++|+||||||||||+++|+|+++|. +|+|.+||+++.+ .++++|+||+|++.+|+ .|++|
T Consensus 498 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIre 573 (711)
T TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRE 573 (711)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHHH
Confidence 4899999999999999999999999999999999994 8999999999864 47889999999998886 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++.... + .+++.++++..++. +..|+.+++. ..+||||||||++|||||+++|+|||
T Consensus 574 NI~~g~~~~-----~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~----G~~LSGGQkQRlalARALl~~p~ILI 640 (711)
T TIGR00958 574 NIAYGLTDT-----P----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK----GSQLSGGQKQRIAIARALVRKPRVLI 640 (711)
T ss_pred HHhcCCCCC-----C----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC----CCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999863211 1 12234555555543 3467777764 34699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||||+||+.+...+.+ .. ...++|+|++||+++ ....||+|++|++|+++..|+++++++
T Consensus 641 LDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 641 LDEATSALDAECEQLLQE-SR---SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEccccccCHHHHHHHHH-hh---ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999999999999999988 22 224789999999973 467899999999999999999997653
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=294.07 Aligned_cols=157 Identities=33% Similarity=0.543 Sum_probs=140.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||+++|+|||||||||||++|+|+.+|. +|+|.++|+++.. .+++.++|++|++.+++ .|++||
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~ 94 (178)
T cd03247 19 KNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNN 94 (178)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHh
Confidence 4799999999999999999999999999999999984 8999999998743 35678999999987776 699888
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+ + ..||||||||++|||||+.+|++|||||||++|
T Consensus 95 i-------------------------------------~--------~~LS~G~~qrv~laral~~~p~~lllDEP~~~L 129 (178)
T cd03247 95 L-------------------------------------G--------RRFSGGERQRLALARILLQDAPIVLLDEPTVGL 129 (178)
T ss_pred h-------------------------------------c--------ccCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 6 1 129999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|+.++..+++.|+++ .+ +.|||++||++. ++ ..||++++|++|++++.|
T Consensus 130 D~~~~~~l~~~l~~~-~~-~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 130 DPITERQLLSLIFEV-LK-DKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred CHHHHHHHHHHHHHH-cC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 999999999999998 44 799999999974 55 579999999999998654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=291.26 Aligned_cols=188 Identities=27% Similarity=0.386 Sum_probs=167.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
+|+||.+.+||..+|+||||||||||+|+++.+.+|+ +|.+++.|++++. .+|++|+|+.|.+.+|+. ||++
T Consensus 20 ~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tVeD 95 (223)
T COG4619 20 NNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVED 95 (223)
T ss_pred cceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCcccccc-chhh
Confidence 5899999999999999999999999999999999994 8999999999865 489999999999999987 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.|....+.... ..+.+.++++.+++.+. .++. +.+||||||||++|+|.|..-|+|||||||||
T Consensus 96 NlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k~--------it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts 162 (223)
T COG4619 96 NLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTKN--------ITELSGGEKQRIALIRNLQFMPKILLLDEITS 162 (223)
T ss_pred ccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcch--------hhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence 9999776653221 23456789999999764 5555 55699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
+||+.+++.|-++|.++.++++..++.+|||. ++..+.||+++-+..|++
T Consensus 163 ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred hcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 99999999999999999777899999999997 578899999999999875
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=328.38 Aligned_cols=192 Identities=20% Similarity=0.245 Sum_probs=163.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+. ++.+...+.+.+||+||+.+
T Consensus 41 ~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~---------~i~~~~~l~~~lTV~EnL~l 108 (549)
T PRK13545 41 NNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA---------LIAISSGLNGQLTGIENIEL 108 (549)
T ss_pred eeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee---------eEEeccccCCCCcHHHHHHh
Confidence 5799999999999999999999999999999999984 89999999752 12223456677899999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....... ...+..+.+.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+|||+.
T Consensus 109 ~~~~~~~---~~~e~~e~i~elLe~lgL~~~ld~~--------~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 109 KGLMMGL---TKEKIKEIIPEIIEFADIGKFIYQP--------VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQT 177 (549)
T ss_pred hhhhcCC---CHHHHHHHHHHHHHHcCChhHhhCC--------cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 5433221 1222334567899999998888888 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
++..+++.|+++ +++|.|||++||++ .++..+||++++|++|+++..|+++++..
T Consensus 178 sr~~LlelL~el-~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 178 FTKKCLDKMNEF-KEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred HHHHHHHHHHHH-HhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999998 45689999999997 57889999999999999999999987754
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=341.18 Aligned_cols=196 Identities=28% Similarity=0.394 Sum_probs=165.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||.++|+|+||||||||+++|+|+++|. +|+|++||.++.. .+++.++|++|++.+|+. |++|
T Consensus 349 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~ 424 (571)
T TIGR02203 349 DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIAN 424 (571)
T ss_pred cCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHH
Confidence 4899999999999999999999999999999999995 7999999999864 467889999999988865 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++... ... .+++.++++.+++ .+..|+.+++.+ ..||||||||++||||++.+|+++|
T Consensus 425 Ni~~~~~~----~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g----~~LSgGqrQRiaLARall~~~~ill 492 (571)
T TIGR02203 425 NIAYGRTE----QAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENG----VLLSGGQRQRLAIARALLKDAPILI 492 (571)
T ss_pred HHhcCCCC----CCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCC----CcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99876310 111 1234455555554 344677777653 4599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...+++.|+++ . .++|+|++||++ ...+.||+|++|++|+++..|+.++++
T Consensus 493 LDEpts~LD~~~~~~i~~~L~~~-~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 493 LDEATSALDNESERLVQAALERL-M-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred EeCccccCCHHHHHHHHHHHHHH-h-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999988 3 368999999997 467889999999999999999999764
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=328.80 Aligned_cols=195 Identities=29% Similarity=0.458 Sum_probs=167.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++||+|++||-+||+|+|||||||++|+|.+++.. +|+|++||+++.. .+|+.||||||+..+|++ ||.+
T Consensus 369 ~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~----sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~ 443 (591)
T KOG0057|consen 369 KGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY----SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILY 443 (591)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc----CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHH
Confidence 479999999999999999999999999999999883 7999999999965 488999999999888876 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.|+...... +++.++.+..+ +++...+.+|+.+ ..|||||||||+||||++.+|+|++
T Consensus 444 NI~YGn~sas~---------eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG----~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 444 NIKYGNPSASD---------EEVVEACKRAGLHDVISRLPDGYQTLVGERG----LMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HhhcCCCCcCH---------HHHHHHHHHcCcHHHHHhccccchhhHhhcc----cccccchHHHHHHHHHHhcCCCeEE
Confidence 99998643221 12333444444 3456677788854 4599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+|||||+||..+..++++.+.+. ..|+|+|++-|+. ....-||+|++|++|++...|+.++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999995 3589999999996 4678899999999999999999998875
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=297.43 Aligned_cols=192 Identities=19% Similarity=0.151 Sum_probs=156.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEE-ECCEecCccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR-VNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~-i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.||||+|++|++++|+||||||||||+++|+|+++|+ +|+|. ++|..+ .+.+.+.+++.+|+.||+.
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~---------~~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL---------PLGANSFILPGLTGEENAR 71 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee---------ccccccccCCcCcHHHHHH
Confidence 5899999999999999999999999999999999984 89997 777543 1234567889999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+....+... ..+.. ..+.+.+++....++. +..||+|||||++|||||+.+|+++||||||+++|+
T Consensus 72 ~~~~~~~~~---~~~~~---~~~~~~~~l~~~~~~~--------~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 72 MMASLYGLD---GDEFS---HFCYQLTQLEQCYTDR--------VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHcCCC---HHHHH---HHHHHHhChhHHhhch--------HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 876543211 11111 2334556777777777 455999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 224 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 224 (290)
.++..+.+.|.+..+ +.|+|++||++ .++..+||++++|++|++++.++.+++.+++..
T Consensus 138 ~~~~~~~~~l~~~~~--~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 138 ATQLRMQAALACQLQ--QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHHhh--CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 999999998866423 36899999997 478889999999999999999999987665443
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=339.25 Aligned_cols=195 Identities=23% Similarity=0.381 Sum_probs=163.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.. .+++.++|++|++.+|+. |++|
T Consensus 332 ~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~ 407 (569)
T PRK10789 332 ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVAN 407 (569)
T ss_pred cCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999854 467889999999988875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.... .. +.+.++++..++ .+..++.+++. ...||||||||++|||||+++|+++|
T Consensus 408 Ni~~~~~~~-----~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~----g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 408 NIALGRPDA-----TQ----QEIEHVARLASVHDDILRLPQGYDTEVGER----GVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred HHhcCCCCC-----CH----HHHHHHHHHcCCHHHHHhCcCcccceecCC----CCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998753111 11 122333444333 34456666664 35699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...+.+.|+++ . +++|+|++||++. ..+.||++++|++|+++..|+.++++
T Consensus 475 lDEpts~LD~~~~~~i~~~l~~~-~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 475 LDDALSAVDGRTEHQILHNLRQW-G-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred EECccccCCHHHHHHHHHHHHHH-h-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999998 3 4799999999973 45679999999999999999998764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=346.04 Aligned_cols=195 Identities=27% Similarity=0.407 Sum_probs=163.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.++|+|+||||||||+++|+|+++|+ +|+|++||.++.. .+|+.++||+|++.+|+ .|++|
T Consensus 474 ~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~e 549 (694)
T TIGR01846 474 SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RSIRD 549 (694)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeehh-hhHHH
Confidence 5899999999999999999999999999999999995 8999999999864 47889999999988886 49999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.... +. +.+.++++..++ .+..++.+++. ..+||||||||++|||||+++|++||
T Consensus 550 Ni~~~~~~~-----~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~----g~~LSgGq~qri~lARall~~~~ili 616 (694)
T TIGR01846 550 NIALCNPGA-----PF----EHVIHAAKLAGAHDFISELPQGYNTEVGEK----GANLSGGQRQRIAIARALVGNPRILI 616 (694)
T ss_pred HHhcCCCCC-----CH----HHHHHHHHHcChHHHHHhCcCccCcEecCC----CCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 998753111 11 122333333333 33456677664 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...+.+.|+++ . .++|+|++||++. . ...||++++|++|+++..|+.++++
T Consensus 617 lDEpts~LD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~-~-~~~~d~ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 617 FDEATSALDYESEALIMRNMREI-C-RGRTVIIIAHRLS-T-VRACDRIIVLEKGQIAESGRHEELL 679 (694)
T ss_pred EECCCcCCCHHHHHHHHHHHHHH-h-CCCEEEEEeCChH-H-HHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999999999998 3 4799999999973 4 4679999999999999999998765
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=332.60 Aligned_cols=200 Identities=18% Similarity=0.276 Sum_probs=163.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCC---CCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHD---LFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~---~~~~~l 75 (290)
.++||.+++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. ..++.++|+||++ .+++.+
T Consensus 265 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 341 (491)
T PRK10982 265 RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYL 341 (491)
T ss_pred ceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCC
Confidence 5899999999999999999999999999999999984 8999999998753 1356699999984 478888
Q ss_pred CHHHHHHHHH-H-h-cCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 76 TVYEHLYFMA-L-L-KLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~-~-~-~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
|+.+|..+.. . . ............+.+.++++.+++. +..+++ +.+|||||||||+|||+|+.+|+||
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGq~qrv~la~al~~~p~il 413 (491)
T PRK10982 342 DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ--------IGSLSGGNQQKVIIGRWLLTQPEIL 413 (491)
T ss_pred cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc--------cccCCcHHHHHHHHHHHHhcCCCEE
Confidence 8887743321 0 0 0000001122234567889999995 456777 5569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
||||||+|||+.++..+++.|++++ +.|.|||++|||+ .++..+|||+++|++|+++..++++
T Consensus 414 lLDEPt~gLD~~~~~~~~~~l~~l~-~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 414 MLDEPTRGIDVGAKFEIYQLIAELA-KKDKGIIIISSEM-PELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred EEcCCCcccChhHHHHHHHHHHHHH-HCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999995 4589999999997 5788999999999999999877553
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=338.94 Aligned_cols=195 Identities=25% Similarity=0.354 Sum_probs=163.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||+++|||.++|+||||||||||+++|+|+++|. +|+|.+||.++.. .+++.++|+||++.+|+. |++|
T Consensus 357 ~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~ 432 (576)
T TIGR02204 357 DGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVME 432 (576)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHH
Confidence 4899999999999999999999999999999999994 7999999999864 467889999999988764 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.... + .+++.++++.+++. +..++.+++. ...||||||||++||||++.+|++||
T Consensus 433 Ni~~~~~~~-----~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~----g~~LSgGq~Qrl~laRal~~~~~ili 499 (576)
T TIGR02204 433 NIRYGRPDA-----T----DEEVEAAARAAHAHEFISALPEGYDTYLGER----GVTLSGGQRQRIAIARAILKDAPILL 499 (576)
T ss_pred HHhcCCCCC-----C----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCC----CCcCCHHHHHHHHHHHHHHhCCCeEE
Confidence 998753111 1 12234455555543 3345566654 34699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.++..+++.|+++ .+ ++|+|++||++ .....+|++++|++|+++..|+++++.
T Consensus 500 lDEpts~lD~~~~~~i~~~l~~~-~~-~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 500 LDEATSALDAESEQLVQQALETL-MK-GRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred EeCcccccCHHHHHHHHHHHHHH-hC-CCEEEEEecch--HHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 99999999999999999999998 43 79999999997 356789999999999999999988653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=296.04 Aligned_cols=180 Identities=27% Similarity=0.418 Sum_probs=139.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||+|++|++++|+||||||||||+++|+|+.+|+ +|+|.++| .|+|++|++.++ ..|++||+.+
T Consensus 22 ~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g---------~i~~~~q~~~l~-~~t~~enl~~ 88 (204)
T cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG---------SIAYVSQEPWIQ-NGTIRENILF 88 (204)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC---------EEEEEecCchhc-cCcHHHHhcc
Confidence 4899999999999999999999999999999999984 89999998 599999998887 4699999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
..... ........+...+.+.+..+ ++....++. +..||+|||||++|||||+.+|+++||||||++||
T Consensus 89 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 89 GKPFD-EERYEKVIKACALEPDLEILPDGDLTEIGEK--------GINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CCCcC-HHHHHHHHHHcCcHHHHHhccCcccceecCC--------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 53211 00000000000111222222 222233333 45699999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 162 SFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 162 ~~~~~~i~~-~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
+.++..+++ +++.+ .+.|.|||++||++ ..+.. ||++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~-~~~~~tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGL-LLNNKTRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHh-ccCCCEEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 999999998 46666 34489999999997 45655 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=297.61 Aligned_cols=180 Identities=24% Similarity=0.352 Sum_probs=145.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|+++.. ..++.++|++|++.++ ..
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~ 93 (218)
T cd03290 18 SNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NA 93 (218)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccchhhcceEEEEcCCCccc-cc
Confidence 4799999999999999999999999999999999884 8999999987642 1346799999998877 57
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-----------cCcccCCcCCCCCCCCChHHHHHHHHHHHH
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-----------QHTRIGSSSITQKVVLSGGERKRLSFATEL 144 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL 144 (290)
|++||+.+.... ... .+.++++.+++.+. .++. +..|||||||||+|||||
T Consensus 94 t~~~nl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~LS~G~~qrv~laral 155 (218)
T cd03290 94 TVEENITFGSPF------NKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGER--------GINLSGGQRQRICVARAL 155 (218)
T ss_pred cHHHHHhhcCcC------CHH----HHHHHHHHhCcHHHHHhCcCccccCcccC--------CCcCCHHHHHHHHHHHHH
Confidence 999999875311 111 11233444444322 2233 456999999999999999
Q ss_pred HhCCCeEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 145 LTDPALLLCDEPTTGLDSFSASKLIR--MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 145 ~~~p~llllDEPtsgLD~~~~~~i~~--~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
+.+|++|||||||++||+.++..+++ +++.+ ++.|.|+|++||++. .+ ..||++++|++|.
T Consensus 156 ~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 156 YQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL-QDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred hhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH-hcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 99999999999999999999999998 67766 456899999999974 55 5799999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=293.97 Aligned_cols=175 Identities=21% Similarity=0.257 Sum_probs=148.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFM 84 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~ 84 (290)
++||++++||+++|+||||||||||+++|+|+.+|+ +|+|+++|.++....++.++|++|++.+++.+||.||+.+.
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~ 94 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFW 94 (195)
T ss_pred EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHH
Confidence 599999999999999999999999999999999984 89999999987542245699999998888889999999886
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHH
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~ 164 (290)
..... ..+.+.++++.+++.+..++. +..||||||||++|||||+.+|+++||||||+|||+.+
T Consensus 95 ~~~~~--------~~~~~~~~l~~~~l~~~~~~~--------~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~ 158 (195)
T PRK13541 95 SEIYN--------SAETLYAAIHYFKLHDLLDEK--------CYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN 158 (195)
T ss_pred HHhcc--------cHHHHHHHHHHcCCHhhhccC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 53321 123456788999998777777 45599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 201 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v 201 (290)
+..+.++|+.. .+.|.|+|++||++. . ...+|.+
T Consensus 159 ~~~l~~~l~~~-~~~~~tiii~sh~~~-~-i~~~~~~ 192 (195)
T PRK13541 159 RDLLNNLIVMK-ANSGGIVLLSSHLES-S-IKSAQIL 192 (195)
T ss_pred HHHHHHHHHHH-HhCCCEEEEEeCCcc-c-cchhhee
Confidence 99999999876 456899999999974 3 4456654
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=337.33 Aligned_cols=195 Identities=24% Similarity=0.345 Sum_probs=160.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+++.++|++|++.+++ .|++|
T Consensus 352 ~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~ 427 (585)
T TIGR01192 352 FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRE 427 (585)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHH
Confidence 4799999999999999999999999999999999994 8999999998854 46788999999998886 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.... +.++ +.++++..+ +.+..++.+++. ...||||||||++|||||+.+|++||
T Consensus 428 Ni~~~~~~~-----~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~----~~~LSgGq~qrl~lARall~~p~ili 494 (585)
T TIGR01192 428 NIRLGREGA-----TDEE----VYEAAKAAAAHDFILKRSNGYDTLVGER----GNRLSGGERQRLAIARAILKNAPILV 494 (585)
T ss_pred HHhcCCCCC-----CHHH----HHHHHHHhCcHHHHHhccccccchhcCC----CCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998853211 1111 112222222 233345555553 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.++..+.+.|.++ .+ ++|+|++||++ +.+ ..||++++|++|+++..|+.+++.
T Consensus 495 lDEpts~LD~~~~~~i~~~l~~~-~~-~~tvI~isH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 495 LDEATSALDVETEARVKNAIDAL-RK-NRTTFIIAHRL-STV-RNADLVLFLDQGRLIEKGSFQELI 557 (585)
T ss_pred EECCccCCCHHHHHHHHHHHHHH-hC-CCEEEEEEcCh-HHH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999988 43 79999999997 344 679999999999999999998765
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=286.22 Aligned_cols=149 Identities=35% Similarity=0.562 Sum_probs=134.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. +|+|+++|+++.. .+++.++|+||++.+++ .|++|
T Consensus 19 ~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e 94 (171)
T cd03228 19 KDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRE 94 (171)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHH
Confidence 4899999999999999999999999999999999984 7999999998753 24567999999987776 58887
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+ ||+||||||+|||||+.+|++|||||||+|
T Consensus 95 ~l------------------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~g 126 (171)
T cd03228 95 NI------------------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSA 126 (171)
T ss_pred Hh------------------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence 75 599999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
||+.++..+.++|+++ .+ ++|||++||++ .++.. ||++++|++|+
T Consensus 127 LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 127 LDPETEALILEALRAL-AK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCHHHHHHHHHHHHHh-cC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 9999999999999998 44 69999999997 46665 99999999884
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=363.83 Aligned_cols=200 Identities=26% Similarity=0.365 Sum_probs=166.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-------------------------------------------
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD------------------------------------------- 40 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~------------------------------------------- 40 (290)
.|+||+|++|+.+||+||||||||||+++|.|+++|.
T Consensus 1185 ~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 (1466)
T PTZ00265 1185 KDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEG 1264 (1466)
T ss_pred cCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence 4799999999999999999999999999999999982
Q ss_pred --------CCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHH
Q psy2520 41 --------CIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE 108 (290)
Q Consensus 41 --------~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (290)
...+|+|++||.++.. .+|+.||||+|++.+|+ .|++|||.|+..-. +. +.+.++++.
T Consensus 1265 ~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~~a-----t~----eeI~~A~k~ 1334 (1466)
T PTZ00265 1265 GSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDA-----TR----EDVKRACKF 1334 (1466)
T ss_pred ccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCCCC-----CH----HHHHHHHHH
Confidence 0138999999999864 47899999999999885 69999999973211 11 112333333
Q ss_pred c-------CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc
Q psy2520 109 L-------GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181 (290)
Q Consensus 109 ~-------~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 181 (290)
. .|.+.+|+.+|+.+ ..||||||||++|||||+++|+|||||||||+||+.+...+.+.|.++...+++
T Consensus 1335 A~l~~fI~~LP~GydT~VGe~G----~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~ 1410 (1466)
T PTZ00265 1335 AAIDEFIESLPNKYDTNVGPYG----KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADK 1410 (1466)
T ss_pred cCCHHHHHhCccccCCccCCCC----CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCC
Confidence 3 35667889998853 459999999999999999999999999999999999999999999998323589
Q ss_pred EEEEEeCCCcHHHHhhcCeEEEEeC----CeEE-EEcCHHHHH
Q psy2520 182 TVLCTIHQPSSELIDMFDKIILLAD----SRTA-FIGSKDAAL 219 (290)
Q Consensus 182 tii~~tH~~~~~~~~~~d~v~~l~~----G~i~-~~g~~~~~~ 219 (290)
|+|+|+|++. ..+.||+|++|++ |+++ ..|+.++++
T Consensus 1411 TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1411 TIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred EEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999973 5678999999999 8965 799999765
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=328.61 Aligned_cols=193 Identities=23% Similarity=0.308 Sum_probs=160.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. ..+||++|++.+++.+||+|++.+
T Consensus 18 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~-------~~i~~~~q~~~~~~~~tv~e~l~~ 87 (530)
T PRK15064 18 ENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN-------ERLGKLRQDQFAFEEFTVLDTVIM 87 (530)
T ss_pred eCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC-------CEEEEEeccCCcCCCCcHHHHHHH
Confidence 5899999999999999999999999999999999984 799999873 359999999888999999999987
Q ss_pred HHH-hc----------Cchh------------------hhHHHHHHHHHHHHHHcCCCCcc-CcccCCcCCCCCCCCChH
Q psy2520 84 MAL-LK----------LDRR------------------VKAYQRIALINSLLIELGLMNSQ-HTRIGSSSITQKVVLSGG 133 (290)
Q Consensus 84 ~~~-~~----------~~~~------------------~~~~~~~~~~~~~l~~~~l~~~~-~~~v~~~~~~~~~~LSgG 133 (290)
+.. .. .... ....+...++.++++.+|+.+.. ++. +.+||||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~~LSgG 159 (530)
T PRK15064 88 GHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL--------MSEVAPG 159 (530)
T ss_pred hhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc--------hhhcCHH
Confidence 531 00 0000 00001234577899999997643 455 4559999
Q ss_pred HHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE-EEE
Q psy2520 134 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT-AFI 212 (290)
Q Consensus 134 qrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i-~~~ 212 (290)
|||||+||++|+.+|++|||||||++||+.++..+.++|++ .|.|||+|||++ ..+..+||++++|++|++ ++.
T Consensus 160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~-~~~~~~~d~i~~l~~g~i~~~~ 234 (530)
T PRK15064 160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDR-HFLNSVCTHMADLDYGELRVYP 234 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCH-HHHHhhcceEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999863 378999999997 578899999999999999 478
Q ss_pred cCHHHHH
Q psy2520 213 GSKDAAL 219 (290)
Q Consensus 213 g~~~~~~ 219 (290)
|++++.+
T Consensus 235 g~~~~~~ 241 (530)
T PRK15064 235 GNYDEYM 241 (530)
T ss_pred CCHHHHH
Confidence 9888654
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=298.53 Aligned_cols=169 Identities=25% Similarity=0.346 Sum_probs=152.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
+||||.+++||+++|+|+||||||||-|+|.|+.+| ++|+|+++|+++....
T Consensus 30 d~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~------------------------- 81 (268)
T COG4608 30 DGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLS------------------------- 81 (268)
T ss_pred cceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcc-------------------------
Confidence 589999999999999999999999999999999999 4899999999864311
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
...+.+++.++|+.+|+.. .+.+. +.+||||||||++|||||+.+|+++++|||+|+||.
T Consensus 82 -----------~~~~~~~v~elL~~Vgl~~~~~~ry--------PhelSGGQrQRi~IARALal~P~liV~DEpvSaLDv 142 (268)
T COG4608 82 -----------KEERRERVLELLEKVGLPEEFLYRY--------PHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142 (268)
T ss_pred -----------hhHHHHHHHHHHHHhCCCHHHhhcC--------CcccCchhhhhHHHHHHHhhCCcEEEecCchhhcch
Confidence 2234466889999999964 67777 566999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
..+.+++++|+++..+.|.|.+++|||+ ..+..++||+.+|+.|+++..|+.++++.
T Consensus 143 SiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 143 SVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred hHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999877899999999997 57888999999999999999999998763
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=328.20 Aligned_cols=198 Identities=21% Similarity=0.282 Sum_probs=157.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCC--CCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSP--SLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~--~lT 76 (290)
.|+||++++||+++|+||||||||||+++|+|+.++. ++|+|+++|+++.. ..++.+||++|++.++. ..+
T Consensus 277 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 354 (490)
T PRK10938 277 HNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTS 354 (490)
T ss_pred eeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCc
Confidence 4799999999999999999999999999999987641 37999999987532 23567999999865543 346
Q ss_pred HHHHHHHHHHh--cCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 77 VYEHLYFMALL--KLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 77 v~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
+.+++.+.... ....... ....+.+.++++.++|.+ ..+++ +.+|||||||||+|||||+.+|++|||
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGq~qrv~la~al~~~p~lllL 425 (490)
T PRK10938 355 VRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP--------FHSLSWGQQRLALIVRALVKHPTLLIL 425 (490)
T ss_pred HHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 77666543211 0000011 122345788999999987 77887 455999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHh-hcCeEEEEeCCeEEEEc
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADSRTAFIG 213 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~-~~d~v~~l~~G~i~~~g 213 (290)
||||+|||+.++..++++|++++++.+.|||++||++ .++.. +||++++|++|+++..-
T Consensus 426 DEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 426 DEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred cCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999654345799999997 46766 59999999999988654
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=284.16 Aligned_cols=214 Identities=26% Similarity=0.318 Sum_probs=183.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.+||++|++||+.+|+||||||||||.++|+|.- .+..++|+|.++|+++.. +.|..+...||.|.-+|..|+.
T Consensus 21 kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p-~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~ 99 (251)
T COG0396 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP-KYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNS 99 (251)
T ss_pred cCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC-CceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHH
Confidence 4799999999999999999999999999999973 334579999999999865 4677899999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
+.|..+............+..+.+.+.++.+++.. +++|.+.. ++|||||||..|+.+++.+|++.|||||-
T Consensus 100 ~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~-------GFSGGEkKR~EilQ~~~lePkl~ILDE~D 172 (251)
T COG0396 100 DFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE-------GFSGGEKKRNEILQLLLLEPKLAILDEPD 172 (251)
T ss_pred HHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC-------CcCcchHHHHHHHHHHhcCCCEEEecCCC
Confidence 99988765432211112344566788999999976 77888665 49999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhc--CeEEEEeCCeEEEEcCHHHHHHHHHHCCCCC
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF--DKIILLADSRTAFIGSKDAALAFLESQGYPC 229 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~--d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~ 229 (290)
||||..+-+.+.+.+..+ ++.|.+++++||.. .+..+. |++.+|.+|+|+..|.+ ++...++..|+.|
T Consensus 173 SGLDIdalk~V~~~i~~l-r~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 173 SGLDIDALKIVAEGINAL-REEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred cCccHHHHHHHHHHHHHH-hcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence 999999999999999999 56699999999984 677876 99999999999999999 7888888888754
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=332.23 Aligned_cols=199 Identities=29% Similarity=0.424 Sum_probs=173.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c----ccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K----FRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~----~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. . .++.++|+||++.+++.+
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 101 (648)
T PRK10535 25 KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHL 101 (648)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCC
Confidence 4899999999999999999999999999999999984 8999999999754 1 146799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|+.||+.+...... ....+..+++.++++.++|.+..++. +..||+||+||++|||||+.+|++|||||
T Consensus 102 tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~lgl~~~~~~~--------~~~LS~Gq~qrv~LAraL~~~P~lLllDE 170 (648)
T PRK10535 102 TAAQNVEVPAVYAG---LERKQRLLRAQELLQRLGLEDRVEYQ--------PSQLSGGQQQRVSIARALMNGGQVILADE 170 (648)
T ss_pred CHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999988653322 12233445678899999998888888 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+|||+.++..+.++|++++ ++|.|+|++||++ .. ...||++++|++|++++.|++++..
T Consensus 171 P~~gLD~~s~~~l~~ll~~l~-~~g~tilivsH~~-~~-~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 171 PTGALDSHSGEEVMAILHQLR-DRGHTVIIVTHDP-QV-AAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-hcCCEEEEECCCH-HH-HHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999984 4589999999997 34 4679999999999999999998664
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=328.68 Aligned_cols=191 Identities=26% Similarity=0.334 Sum_probs=159.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.+++ ...+||++|++.+++.+||.||+.+
T Consensus 24 ~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~-------~~~i~~v~Q~~~~~~~~tv~e~l~~ 93 (556)
T PRK11819 24 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAP-------GIKVGYLPQEPQLDPEKTVRENVEE 93 (556)
T ss_pred eCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecC-------CCEEEEEecCCCCCCCCcHHHHHHH
Confidence 4899999999999999999999999999999999984 79999975 2469999999999999999999987
Q ss_pred HHHh-c-------------Cchh--hh-----------------HHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCC
Q psy2520 84 MALL-K-------------LDRR--VK-----------------AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130 (290)
Q Consensus 84 ~~~~-~-------------~~~~--~~-----------------~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~L 130 (290)
+... . .... .. ......++.++++.+|+.. .+++ +.+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~--------~~~L 164 (556)
T PRK11819 94 GVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAK--------VTKL 164 (556)
T ss_pred hhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCc--------hhhc
Confidence 5321 0 0000 00 0011345778899999964 6777 4559
Q ss_pred ChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE
Q psy2520 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 210 (290)
Q Consensus 131 SgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~ 210 (290)
||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ . .|||++||++ .++..+||++++|++|+++
T Consensus 165 SgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~-~---~tviiisHd~-~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 165 SGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY-P---GTVVAVTHDR-YFLDNVAGWILELDRGRGI 239 (556)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC-C---CeEEEEeCCH-HHHHhhcCeEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999987 2 4999999997 5788899999999999986
Q ss_pred -EEcCHHHH
Q psy2520 211 -FIGSKDAA 218 (290)
Q Consensus 211 -~~g~~~~~ 218 (290)
+.|+.++.
T Consensus 240 ~~~g~~~~~ 248 (556)
T PRK11819 240 PWEGNYSSW 248 (556)
T ss_pred EecCCHHHH
Confidence 77887754
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=299.50 Aligned_cols=185 Identities=26% Similarity=0.413 Sum_probs=147.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++||++++||+++|+||||||||||+++|+|+++|. +|+|.++| .++|++|++.+++. ||+||+.+
T Consensus 54 ~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g---------~i~yv~q~~~l~~~-tv~enl~~ 120 (282)
T cd03291 54 KNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG---------RISFSSQFSWIMPG-TIKENIIF 120 (282)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------EEEEEeCccccccc-CHHHHhhc
Confidence 4799999999999999999999999999999999984 79999988 39999999888774 99999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-------cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNS-------QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
..... .. .+.++++.+++.+. .++.++.. +..||||||||++|||+|+.+|++||||||
T Consensus 121 ~~~~~---~~-------~~~~~l~~~~l~~~l~~~~~~~~~~~~~~----~~~LSgGq~qrv~lAraL~~~p~iLiLDEP 186 (282)
T cd03291 121 GVSYD---EY-------RYKSVVKACQLEEDITKFPEKDNTVLGEG----GITLSGGQRARISLARAVYKDADLYLLDSP 186 (282)
T ss_pred ccccC---HH-------HHHHHHHHhCCHHHHHhccccccceecCC----CCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 53211 00 01122222232211 11122111 456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMM-RELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l-~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+++.+ +.+ ++ +.|||++||++. .+ ..||++++|++|++++.|+++++.
T Consensus 187 t~gLD~~~~~~l~~~ll~~~-~~-~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 187 FGYLDVFTEKEIFESCVCKL-MA-NKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CccCCHHHHHHHHHHHHHHh-hC-CCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999864 566 33 789999999974 54 689999999999999999988764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=278.00 Aligned_cols=141 Identities=33% Similarity=0.497 Sum_probs=127.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.++||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.++|+||
T Consensus 17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~~i~~~~q----------- 82 (163)
T cd03216 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDARRAGIAMVYQ----------- 82 (163)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHHHhcCeEEEEe-----------
Confidence 4799999999999999999999999999999999984 7999999998753 13456777777
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
||||||||++|||||+.+|+++||||||+
T Consensus 83 ---------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~~ 111 (163)
T cd03216 83 ---------------------------------------------------LSVGERQMVEIARALARNARLLILDEPTA 111 (163)
T ss_pred ---------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 69999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
+||+.++..+.+.|++++ ++|.|+|++||++ .++..+||++++|++|++++
T Consensus 112 ~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 112 ALTPAEVERLFKVIRRLR-AQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 999999999999999994 4589999999997 46888999999999999874
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=295.44 Aligned_cols=203 Identities=27% Similarity=0.368 Sum_probs=172.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEc-cCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMY-QHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~-Q~~~~~~~lTv~e 79 (290)
-||||++.+|++++++|||||||||+||+|+|++.|+ +|.|.++|.+... .+-+.+++|+ |...+.-.+.+.+
T Consensus 41 qdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred heeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 3899999999999999999999999999999999994 8999999987643 2445677775 4355555556777
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
.+......+ .+....-.++.+.+.+.++|....+.+ ++.||-|||.|+.||.+|+++|+||+|||||-|
T Consensus 118 s~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~--------vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 118 SLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP--------VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh--------hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 766544443 233445556778888899999888888 455999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 221 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 221 (290)
||..++..+.+.|++.+.+++.||+++||++ ..+..+||||++|++|+++++|+.+++...
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 9999999999999999888899999999998 479999999999999999999999977543
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=278.88 Aligned_cols=147 Identities=34% Similarity=0.476 Sum_probs=130.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|. +.++|++|++.++ ..|+.||+.+
T Consensus 18 ~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~-------~~i~~~~q~~~~~-~~tv~~nl~~ 86 (166)
T cd03223 18 KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG-------EDLLFLPQRPYLP-LGTLREQLIY 86 (166)
T ss_pred ecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC-------ceEEEECCCCccc-cccHHHHhhc
Confidence 4899999999999999999999999999999999984 899999873 5699999997765 5799999875
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
. . +..||||||||++|||||+.+|+++||||||++||+.
T Consensus 87 ~---------------------------------~--------~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~ 125 (166)
T cd03223 87 P---------------------------------W--------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125 (166)
T ss_pred c---------------------------------C--------CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHH
Confidence 2 1 2349999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
++..+.+.|+++ +.|+|++||++. ...+||++++|+++.
T Consensus 126 ~~~~l~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 126 SEDRLYQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 999999999876 479999999973 457999999998764
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=314.55 Aligned_cols=206 Identities=30% Similarity=0.453 Sum_probs=177.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++||.+.+|+.++||||||||||||.|+|.|..+| ++|.|.+||-++.+ .+-+.|||+||+-.+|+. ||.|
T Consensus 353 ~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p---~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIae 428 (580)
T COG4618 353 KGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAE 428 (580)
T ss_pred ecceeEecCCceEEEECCCCccHHHHHHHHHccccc---CCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHH
Confidence 589999999999999999999999999999999999 48999999999865 367899999999888875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
||.-+.......++-+..+...+.+++- .+.+-+|+.+|+.+ ..||||||||+++||||..+|.+++||||-++
T Consensus 429 NIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~G----~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsN 502 (580)
T COG4618 429 NIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEGG----ATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502 (580)
T ss_pred HHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCCC----CCCCchHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 9975432222223333444445666653 56788999999974 45999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 222 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 222 (290)
||......+.+.|.++ +.+|.|+|++||.| .+...+|+|++|++|++-.+|+.++++..+
T Consensus 503 LD~~GE~AL~~Ai~~~-k~rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 503 LDSEGEAALAAAILAA-KARGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred cchhHHHHHHHHHHHH-HHcCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999 56799999999998 367889999999999999999999987644
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=318.71 Aligned_cols=195 Identities=30% Similarity=0.437 Sum_probs=168.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||.+||+|+||||||||+..|+|.++|+ +|+|.++|.++.. .+++.+++++|...+|.. |+++
T Consensus 355 ~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~ 430 (573)
T COG4987 355 KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRD 430 (573)
T ss_pred hccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHH
Confidence 5899999999999999999999999999999999995 8999999998854 378899999999888875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-------ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++..-. + .+.+.++++.+||.+ ..++.+|+.+ ..||||||||++|||+|+++.+++|
T Consensus 431 NL~lA~~~A-----s----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G----~~LSGGE~rRLAlAR~LL~dapl~l 497 (573)
T COG4987 431 NLRLANPDA-----S----DEELWAALQQVGLEKLLESAPDGLNTWLGEGG----RRLSGGERRRLALARALLHDAPLWL 497 (573)
T ss_pred HHhhcCCCC-----C----HHHHHHHHHHcCHHHHHHhChhhhhchhccCC----CcCCchHHHHHHHHHHHHcCCCeEE
Confidence 998864221 1 233556777777754 3455778764 4599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||.|||+.+.+++++.|.+.. +|+|+|++||+.. -.+.||||++|++|+++++|++.+++
T Consensus 498 LDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~Ll 560 (573)
T COG4987 498 LDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAELL 560 (573)
T ss_pred ecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHhhh
Confidence 999999999999999999999873 3899999999974 36789999999999999999999765
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=324.48 Aligned_cols=185 Identities=25% Similarity=0.381 Sum_probs=158.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCC--CCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL--FSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~--~~~~lTv~e~l 81 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+ +.+||++|++. +++.+||.+++
T Consensus 336 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~-------~~i~~~~q~~~~~~~~~~t~~~~~ 405 (530)
T PRK15064 336 KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN-------ANIGYYAQDHAYDFENDLTLFDWM 405 (530)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc-------eEEEEEcccccccCCCCCcHHHHH
Confidence 4799999999999999999999999999999999984 799999873 46999999863 56679999998
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
.+... . . ...+.+.++++.+++. +..+++ +.+|||||||||+|||+|+.+|++|||||||+||
T Consensus 406 ~~~~~---~-~----~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~L 469 (530)
T PRK15064 406 SQWRQ---E-G----DDEQAVRGTLGRLLFSQDDIKKS--------VKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHM 469 (530)
T ss_pred HHhcc---C-C----ccHHHHHHHHHHcCCChhHhcCc--------ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 65211 0 0 0123467899999994 567777 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAAL 219 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 219 (290)
|+.++..+.+.|+++ +.|||++|||+ .++..+||++++|++|+++ +.|++.+++
T Consensus 470 D~~~~~~l~~~l~~~----~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 470 DMESIESLNMALEKY----EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred CHHHHHHHHHHHHHC----CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 999999999999876 24999999997 5788899999999999998 789888653
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=324.99 Aligned_cols=193 Identities=26% Similarity=0.323 Sum_probs=158.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||+|++|++++|+|||||||||||++|+|+.+|+ +|+|.+++ +..|||++|++.+++.+||.||+.+
T Consensus 22 ~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~-------~~~i~~v~Q~~~~~~~~tv~e~i~~ 91 (552)
T TIGR03719 22 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAP-------GIKVGYLPQEPQLDPTKTVRENVEE 91 (552)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecC-------CCEEEEEeccCCCCCCCcHHHHHHH
Confidence 5899999999999999999999999999999999984 79999975 2469999999999999999999987
Q ss_pred HHHh-c-------------CchhhhH-------------------HHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCC
Q psy2520 84 MALL-K-------------LDRRVKA-------------------YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130 (290)
Q Consensus 84 ~~~~-~-------------~~~~~~~-------------------~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~L 130 (290)
+... . ....... .....++.++++.+++.. .+++ +..|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~--------~~~L 162 (552)
T TIGR03719 92 GVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDAD--------VTKL 162 (552)
T ss_pred hhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCc--------hhhc
Confidence 5321 0 0000000 001134567788888853 5666 4559
Q ss_pred ChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE
Q psy2520 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 210 (290)
Q Consensus 131 SgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~ 210 (290)
||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+|||++ ..+..+||++++|++|+++
T Consensus 163 SgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~-~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDR-YFLDNVAGWILELDRGRGI 237 (552)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCH-HHHHhhcCeEEEEECCEEE
Confidence 999999999999999999999999999999999999999999876 24999999997 5788899999999999976
Q ss_pred -EEcCHHHHHH
Q psy2520 211 -FIGSKDAALA 220 (290)
Q Consensus 211 -~~g~~~~~~~ 220 (290)
+.|+.++..+
T Consensus 238 ~~~g~~~~~~~ 248 (552)
T TIGR03719 238 PWEGNYSSWLE 248 (552)
T ss_pred EecCCHHHHHH
Confidence 7788886543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=339.90 Aligned_cols=272 Identities=30% Similarity=0.481 Sum_probs=236.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc-ccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-FRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~-~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|+|+.++||+++.++||.||||||||++++|-++......|+|.+||.+.+.. -++.++|+.|++..+|.|||+|.|.
T Consensus 132 ~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTld 211 (1391)
T KOG0065|consen 132 KDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLD 211 (1391)
T ss_pred cCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhh
Confidence 479999999999999999999999999999998876544578999999998763 3578999999999999999999999
Q ss_pred HHHHhcCchh----hhHHHHH-HHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 83 FMALLKLDRR----VKAYQRI-ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 83 ~~~~~~~~~~----~~~~~~~-~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
|+++.+.+.. ..+.+.. ...+.+++.+||.+++|+.+|++.+ ++.|||||+||++|.+++.+|+++++||+|
T Consensus 212 Fa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~---RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 212 FAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMV---RGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred HHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceeccccc---ccccCcccceeeeeeeeecCcceeeeeccc
Confidence 9998876521 2222221 2467899999999999999999876 569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHHHCCCCCCCCCChHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPAD 237 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~~~~~~~~~ 237 (290)
+|||..++.++++.|+.+++..+.|.+++.+|+..++++++|.|++|.+|+++|+|+.++++++|++.|+.||.+..++|
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~AD 368 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTAD 368 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHH
Confidence 99999999999999999988789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCc-------hhhhHHHHHHHHHHHhhhchhHHhHhhhhh
Q psy2520 238 FLIKSLAVTTN-------DELSSRRRLKRICDEFSVCDFAKEVDLEIN 278 (290)
Q Consensus 238 ~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 278 (290)
++.++.+.... ...-......++.+.|..++.+++...+.+
T Consensus 369 fLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~ 416 (1391)
T KOG0065|consen 369 FLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELS 416 (1391)
T ss_pred HHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhc
Confidence 99998761110 001111234788999999999999888876
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=326.38 Aligned_cols=182 Identities=23% Similarity=0.253 Sum_probs=157.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++ ..++|+||+..+++.+||+|++.+
T Consensus 356 ~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~---------~~i~y~~Q~~~~~~~~tv~e~l~~ 423 (590)
T PRK13409 356 EVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE---------LKISYKPQYIKPDYDGTVEDLLRS 423 (590)
T ss_pred EecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe---------eeEEEecccccCCCCCcHHHHHHH
Confidence 3678999999999999999999999999999999994 7999985 159999999888889999999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
..... .. ...+.++++.++|.+..++. +.+|||||||||+||+||+.+|++|||||||+|||+.
T Consensus 424 ~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~--------~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~ 487 (590)
T PRK13409 424 ITDDL-----GS---SYYKSEIIKPLQLERLLDKN--------VKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE 487 (590)
T ss_pred Hhhhc-----Ch---HHHHHHHHHHCCCHHHHhCC--------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 53211 11 12357899999998888888 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 215 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~ 215 (290)
++..+.++|++++++.|.|||++|||+ .++..+|||+++|+ |++...|..
T Consensus 488 ~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 488 QRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeeec
Confidence 999999999999665689999999997 57888999999996 577776653
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=339.81 Aligned_cols=203 Identities=27% Similarity=0.416 Sum_probs=171.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+|+++++|+.+||+|||||||||.+.+|-.++.|. +|.|.+||.++.+ .+|+++|.|.|+|.||.. |++|
T Consensus 1007 ~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrE 1082 (1228)
T KOG0055|consen 1007 NNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRE 1082 (1228)
T ss_pred cCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHH
Confidence 4789999999999999999999999999999999994 8999999999976 479999999999999875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
||.|+..--...++.+..+.+.+.+.+ .+|++-+|+.+|+. ..+||||||||++||||+++||+||||||.||+
T Consensus 1083 NI~YG~~~vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vGer----G~QLSGGQKQRIAIARAilRnPkILLLDEATSA 1156 (1228)
T KOG0055|consen 1083 NIAYGSEEVSEEEIIEAAKLANAHNFI--SSLPQGYDTRVGER----GVQLSGGQKQRIAIARAILRNPKILLLDEATSA 1156 (1228)
T ss_pred HHhccCCCCCHHHHHHHHHHhhhHHHH--hcCcCcccCccCcc----cCcCCchHHHHHHHHHHHHcCCCeeeeeccchh
Confidence 999982110101111111112222222 36788999999986 456999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||.++.+-+.+.|.+. . .|+|.|+|.|.++ ..+.||.|+++++|++++.|+.++++.
T Consensus 1157 LDseSErvVQeALd~a-~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDRA-M-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred hhhhhHHHHHHHHHHh-h-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999999999998 4 4899999999974 568899999999999999999998764
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=327.23 Aligned_cols=168 Identities=32% Similarity=0.404 Sum_probs=142.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.|+||++++||.+||+||||||||||+++|+|+++|+ +|+|.+||.++.+ .+|+.++||||++.+|+. |++||
T Consensus 352 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eN 427 (529)
T TIGR02868 352 DGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDN 427 (529)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHH
Confidence 4899999999999999999999999999999999995 8999999998864 477899999999998875 99999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llll 153 (290)
|.++.... + .+++.++++..++ ++..|+.+|+.+ ..||||||||++|||||+.+|++|||
T Consensus 428 I~~g~~~~-----~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G----~~LSGGQrQRiaiARall~~~~iliL 494 (529)
T TIGR02868 428 LRLGRPDA-----T----DEELWAALERVGLADWLRSLPDGLDTVLGEGG----ARLSGGERQRLALARALLADAPILLL 494 (529)
T ss_pred HhccCCCC-----C----HHHHHHHHHHcCCHHHHHhCcccccchhcccc----CcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99863211 1 1223445555444 455688888753 45999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
|||||+||+.+...+.+.|.++ . +++|+|++||++
T Consensus 495 DE~TSaLD~~te~~I~~~l~~~-~-~~~TvIiItHrl 529 (529)
T TIGR02868 495 DEPTEHLDAGTESELLEDLLAA-L-SGKTVVVITHHL 529 (529)
T ss_pred eCCcccCCHHHHHHHHHHHHHh-c-CCCEEEEEecCC
Confidence 9999999999999999999987 3 479999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=325.21 Aligned_cols=180 Identities=34% Similarity=0.460 Sum_probs=151.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+|+++++|+.++|+||||||||||+++|+|+++|+ +|+|.+||.++.. .+++.++||+|++.+|+ .|++|
T Consensus 339 ~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~ 414 (529)
T TIGR02857 339 RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA-GTIAE 414 (529)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCcccC-cCHHH
Confidence 4899999999999999999999999999999999995 8999999999864 47889999999998886 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.... + .+.+.++++..++. +..|+.+++. ...||||||||++|||||+++|+++|
T Consensus 415 Ni~~~~~~~-----~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~----g~~LSgGq~qri~laRal~~~~~ili 481 (529)
T TIGR02857 415 NIRLARPDA-----S----DAEIRRALERAGLDEFVAALPQGLDTLIGEG----GAGLSGGQAQRLALARAFLRDAPLLL 481 (529)
T ss_pred HHhccCCCC-----C----HHHHHHHHHHcCcHHHHHhCcccccchhccc----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998853211 1 12234555555553 3456777764 35699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
|||||++||+.+...+.+.|.++ . .++|+|++||++. ..+.||+|++|
T Consensus 482 lDE~ts~lD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 482 LDEPTAHLDAETEALVTEALRAL-A-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred EeCcccccCHHHHHHHHHHHHHh-c-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 99999999999999999999998 3 4799999999973 45789999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=353.84 Aligned_cols=194 Identities=24% Similarity=0.252 Sum_probs=165.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||+|++||.+||+||||||||||+++|.|+++|. +|+|.+||.++.. .+|++++||||++.+|+. |++|
T Consensus 1253 ~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~ 1328 (1495)
T PLN03232 1253 HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRF 1328 (1495)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999864 478999999999999875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++.. . + .+++.++++..++ .+..|+.+++. ..+||||||||++|||||+++|+|||
T Consensus 1329 NL~~~~~-~-----s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~----G~~LSgGQrQrlaLARALLr~~~ILI 1394 (1495)
T PLN03232 1329 NIDPFSE-H-----N----DADLWEALERAHIKDVIDRNPFGLDAEVSEG----GENFSVGQRQLLSLARALLRRSKILV 1394 (1495)
T ss_pred HcCCCCC-C-----C----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC----CCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9976421 1 1 1224455555554 34567777775 34599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+||+.+...|.+.|++. . +++|+|+|+|+++ ....||+|++|++|++++.|++++++
T Consensus 1395 LDEATSaLD~~Te~~Iq~~L~~~-~-~~~TvI~IAHRl~--ti~~~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1395 LDEATASVDVRTDSLIQRTIREE-F-KSCTMLVIAHRLN--TIIDCDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999987 3 4799999999973 34569999999999999999999875
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=353.46 Aligned_cols=195 Identities=25% Similarity=0.279 Sum_probs=166.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||+|+|||.+||+|+||||||||+++|.|+++|. +|+|+|||.++.. .+|++|++|||++.+|.. |++|
T Consensus 1256 ~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIre 1331 (1622)
T PLN03130 1256 HGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRF 1331 (1622)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHH
Confidence 5899999999999999999999999999999999994 8999999999875 478999999999999875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.++.. . + .+.+.++++..++ ....|+.+++. ..+||||||||++|||||+++|+|||
T Consensus 1332 NLd~~~~-~-----t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~----G~nLSgGQrQrlaLARALLr~p~ILI 1397 (1622)
T PLN03130 1332 NLDPFNE-H-----N----DADLWESLERAHLKDVIRRNSLGLDAEVSEA----GENFSVGQRQLLSLARALLRRSKILV 1397 (1622)
T ss_pred HhCcCCC-C-----C----HHHHHHHHHHcCcHHHHHhCccccCccccCC----CCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9986421 1 1 1223444444443 34567788775 34599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||||+||+.+...|.+.|++. . .++|+|+|+|+++ ....||||++|++|++++.|++++++.
T Consensus 1398 LDEATSaLD~~Te~~Iq~~I~~~-~-~~~TvI~IAHRL~--tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1398 LDEATAAVDVRTDALIQKTIREE-F-KSCTMLIIAHRLN--TIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EECCCCCCCHHHHHHHHHHHHHH-C-CCCEEEEEeCChH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999987 3 3799999999974 345699999999999999999998763
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=279.65 Aligned_cols=199 Identities=29% Similarity=0.388 Sum_probs=168.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc----ccccEEEEccCC--CCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFMYQHD--LFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~----~~~~ig~v~Q~~--~~~~~lTv 77 (290)
.++|+++..|+++.|+|.||||||||+++|+|-+.|+ +|+|.|+|.++++. ....++-|||+| ..++.||+
T Consensus 23 ~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTi 99 (263)
T COG1101 23 NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTI 99 (263)
T ss_pred hcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccH
Confidence 4789999999999999999999999999999999994 89999999999762 234688899996 57899999
Q ss_pred HHHHHHHHHhc---CchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 78 YEHLYFMALLK---LDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 78 ~e~l~~~~~~~---~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
.||+..+.... ....--...+.+...+.+..+ ||++..+.+++- |||||||-++++.|.++.|+|||
T Consensus 100 eENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl--------LSGGQRQalsL~MAtl~~pkiLL 171 (263)
T COG1101 100 EENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL--------LSGGQRQALSLLMATLHPPKILL 171 (263)
T ss_pred HHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh--------ccchHHHHHHHHHHhcCCCcEEE
Confidence 99999875421 111111233444455666665 557888888554 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
|||-|++|||.++..+++.-.++.++.+.|.++|||++ ..+.++.+|.++|++|+|+.+-.
T Consensus 172 LDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 172 LDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred ecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999999999999999999888899999999998 57899999999999999998743
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=293.04 Aligned_cols=184 Identities=24% Similarity=0.277 Sum_probs=152.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEE-----------ECCEecCc---ccc---ccEEEEc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR-----------VNGKPVEG---KFR---SACGFMY 66 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~-----------i~G~~~~~---~~~---~~ig~v~ 66 (290)
.|+| .+++|++++|+|||||||||||++|+|+++|+ +|+|+ ++|+++.. ..+ ..++|++
T Consensus 18 ~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 18 HRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 4677 48999999999999999999999999999995 89996 78887743 111 2478999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 67 Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
|...+++. ++.+++.+.... ......+.++++.+++.+..++. +..||||||||++|||+|+.
T Consensus 94 ~~~~~~~~-~~~~~i~~~l~~--------~~~~~~~~~~l~~~gl~~~~~~~--------~~~LS~G~~qrv~laral~~ 156 (255)
T cd03236 94 QYVDLIPK-AVKGKVGELLKK--------KDERGKLDELVDQLELRHVLDRN--------IDQLSGGELQRVAIAAALAR 156 (255)
T ss_pred chhccCch-HHHHHHHHHhch--------hHHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHHHHh
Confidence 98777774 888888764311 11224567899999998877777 45599999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
+|+++||||||++||+.++..+.+.|+++++ .++|||++||++ .++..+||++++|+ |++.+
T Consensus 157 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 157 DADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCc
Confidence 9999999999999999999999999999954 589999999997 57778999999995 65654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=298.58 Aligned_cols=206 Identities=24% Similarity=0.367 Sum_probs=178.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCCccEEEECCEecCc-------ccc-ccEEEEccCC--CC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPD--DCIIDGDIRVNGKPVEG-------KFR-SACGFMYQHD--LF 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~--~~~~~G~I~i~G~~~~~-------~~~-~~ig~v~Q~~--~~ 71 (290)
.+|||++.+||.+||+|.||||||-..+.++|+++. ....+|+|.|+|+++-. .+| .+|+++||+| .+
T Consensus 27 k~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSL 106 (534)
T COG4172 27 KGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSL 106 (534)
T ss_pred ccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEeccccccc
Confidence 479999999999999999999999999999999875 23458999999999743 133 4799999997 56
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCcc---CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ---HTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
.|-.|+...+.-....+.. .+..+.++++.++|+.+|+.+-. +.+ +.+|||||||||.||.||+.+|
T Consensus 107 NPl~tIg~Qi~E~l~~Hrg--~~~~~Ar~r~lelL~~VgI~~p~~rl~~y--------PHeLSGGqRQRVMIAMALan~P 176 (534)
T COG4172 107 NPLHTIGKQLAEVLRLHRG--LSRAAARARALELLELVGIPEPEKRLDAY--------PHELSGGQRQRVMIAMALANEP 176 (534)
T ss_pred CcHhHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHcCCCchhhhhhhC--------CcccCcchhhHHHHHHHHcCCC
Confidence 7878999888877766532 34556667889999999997643 444 6779999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
++||.||||++||...+.+|+++|+++.++.|+.++++|||+ ..+.+++|||++|.+|+++..|+++.++.
T Consensus 177 ~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 177 DLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVETGTTETLFA 247 (534)
T ss_pred CeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeecCcHHHHhh
Confidence 999999999999999999999999999888899999999998 57888999999999999999999998773
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=318.75 Aligned_cols=187 Identities=26% Similarity=0.324 Sum_probs=156.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCC-CCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD-LFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~-~~~~~lTv~e~l~ 82 (290)
.||||++++|++++|+|||||||||||++|+|+++|+ +|+|.+++ + ..+||++|++ .+++.+||+||+.
T Consensus 341 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~-~------~~i~~v~q~~~~~~~~~tv~e~l~ 410 (556)
T PRK11819 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGE-T------VKLAYVDQSRDALDPNKTVWEEIS 410 (556)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECC-c------eEEEEEeCchhhcCCCCCHHHHHH
Confidence 4799999999999999999999999999999999984 79999954 2 1599999986 7888999999998
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
+......... . ...+..+++.+++.. ..++. +.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 411 ~~~~~~~~~~-~----~~~~~~~l~~~~l~~~~~~~~--------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 477 (556)
T PRK11819 411 GGLDIIKVGN-R----EIPSRAYVGRFNFKGGDQQKK--------VGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477 (556)
T ss_pred hhcccccccc-c----HHHHHHHHHhCCCChhHhcCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 8643221110 1 112346899999964 56777 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC-CeEE-EEcCHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-SRTA-FIGSKDAA 218 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~-G~i~-~~g~~~~~ 218 (290)
+.++..+++.|+++ . | |||++|||+ .++..+||++++|++ |++. +.|+.++.
T Consensus 478 ~~~~~~l~~~l~~~-~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 478 VETLRALEEALLEF-P--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHHHHHHHHhC-C--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 99999999999987 2 4 899999997 578899999999986 7876 56776643
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=349.41 Aligned_cols=194 Identities=24% Similarity=0.319 Sum_probs=166.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|++||.+||+|+||||||||+++|.|+++|. +|+|.+||.++.. .+|+.|+||||++.+|+. |+++
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIre 1402 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQ 1402 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHH
Confidence 4899999999999999999999999999999999994 7999999999865 478999999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC-CCeE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD-PALL 151 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~-p~ll 151 (290)
||..+. ..+ .+.+.++++..++. +..|+.+++.+ .+||||||||++|||||+++ |+||
T Consensus 1403 NIdp~~------~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G----~nLSgGQrQrLaLARALL~~~~~IL 1468 (1560)
T PTZ00243 1403 NVDPFL------EAS----SAEVWAALELVGLRERVASESEGIDSRVLEGG----SNYSVGQRQLMCMARALLKKGSGFI 1468 (1560)
T ss_pred HhCccc------CCC----HHHHHHHHHHCCChHHHhhCcccccccccCCc----CcCCHHHHHHHHHHHHHhcCCCCEE
Confidence 996431 111 13355666666664 34677777753 45999999999999999996 8999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||||+||+.+...|.+.|++. . +++|+|+|+|++ .....||+|++|++|+++..|++++++
T Consensus 1469 lLDEATSaLD~~te~~Iq~~L~~~-~-~~~TvI~IAHRl--~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1469 LMDEATANIDPALDRQIQATVMSA-F-SAYTVITIAHRL--HTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHH-C-CCCEEEEEeccH--HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999986 3 379999999997 356789999999999999999999875
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=320.09 Aligned_cols=187 Identities=21% Similarity=0.314 Sum_probs=153.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.. .+++.++|++|++.+|+. |+++
T Consensus 340 ~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~ 415 (547)
T PRK10522 340 GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGP 415 (547)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhcc
Confidence 4899999999999999999999999999999999994 8999999999864 477899999999887764 7777
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
| + . . ...+.+.++++.+++....+.. +... +...||||||||++|||||+.+|++|||||||++
T Consensus 416 n---~---~---~----~~~~~~~~~~~~~~l~~~~~~~--~~~~-~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~ 479 (547)
T PRK10522 416 E---G---K---P----ANPALVEKWLERLKMAHKLELE--DGRI-SNLKLSKGQKKRLALLLALAEERDILLLDEWAAD 479 (547)
T ss_pred c---c---C---c----hHHHHHHHHHHHcCCchhhhcc--ccCC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 6 1 0 0 1123456788888886543321 1000 0245999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEE
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 212 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~ 212 (290)
||+.+...+.+.|.+..++.++|+|++||++ .....||++++|++|+++..
T Consensus 480 LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 480 QDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 9999999999998866344589999999997 35678999999999999876
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=317.17 Aligned_cols=186 Identities=24% Similarity=0.313 Sum_probs=154.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCC-CCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD-LFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~-~~~~~lTv~e~l~ 82 (290)
.|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|++++ + ..|||++|++ .+++.+||.||+.
T Consensus 339 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~-~------~~i~~v~q~~~~~~~~~tv~e~l~ 408 (552)
T TIGR03719 339 DDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGE-T------VKLAYVDQSRDALDPNKTVWEEIS 408 (552)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECC-c------eEEEEEeCCccccCCCCcHHHHHH
Confidence 4799999999999999999999999999999999984 89999954 2 1599999986 4788899999998
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
++........ . ...+.++++.+++.. ..++. +..|||||||||+|||+|+.+|++|||||||+|||
T Consensus 409 ~~~~~~~~~~---~--~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD 475 (552)
T TIGR03719 409 GGLDIIQLGK---R--EVPSRAYVGRFNFKGSDQQKK--------VGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475 (552)
T ss_pred hhccccccCc---c--hHHHHHHHHhCCCChhHhcCc--------hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 8643221111 1 112457899999964 46777 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC-CeEE-EEcCHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-SRTA-FIGSKDA 217 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~-G~i~-~~g~~~~ 217 (290)
+.++..+.++|+++ . + |||++|||+ .++..+||++++|++ |++. +.|+.++
T Consensus 476 ~~~~~~l~~~l~~~-~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 476 VETLRALEEALLEF-A--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HHHHHHHHHHHHHC-C--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 99999999999987 2 4 899999997 578889999999986 5776 5576654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=276.57 Aligned_cols=202 Identities=25% Similarity=0.373 Sum_probs=176.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECC-EecCc----c-ccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG-KPVEG----K-FRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G-~~~~~----~-~~~~ig~v~Q~~~~~~~lTv 77 (290)
.++||++.+||+-+|||||||||||++.+|+|..+|. +|+|+++| .++.. . .+..||-=||.|..|..+||
T Consensus 22 n~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV 98 (249)
T COG4674 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTV 98 (249)
T ss_pred eeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccH
Confidence 4799999999999999999999999999999999994 79999999 77764 2 45679999999999999999
Q ss_pred HHHHHHHHHhcCch-----hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 78 YEHLYFMALLKLDR-----RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 78 ~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
+|||..+....... .....+...+++++|...||.+.++.. ...||-||||++.|++.++++|++|+
T Consensus 99 ~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~--------A~~LSHGqKQwLEIGMll~Q~P~lLL 170 (249)
T COG4674 99 RENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL--------AALLSHGQKQWLEIGMLLAQDPKLLL 170 (249)
T ss_pred HHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh--------hhhhccchhhhhhhheeeccCCcEEE
Confidence 99999875432110 011123345789999999999999988 55699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||++|+--....+.-++|+.++ . ..+|+++.||+ .++..++++|.+|+.|.+..+|+.+++-
T Consensus 171 lDEPvAGMTd~Et~~taeLl~~la-~-~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 171 LDEPVAGMTDAETEKTAELLKSLA-G-KHSILVVEHDM-GFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred ecCccCCCcHHHHHHHHHHHHHHh-c-CceEEEEeccH-HHHHHhhheeEEEeccceeecccHHHhh
Confidence 999999999999999999999994 3 57999999997 5899999999999999999999998763
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=284.94 Aligned_cols=199 Identities=28% Similarity=0.423 Sum_probs=169.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccC--CCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQH--DLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~--~~~~~~lT 76 (290)
.|||+++++||-.+|+|||||||||||++++|..+|. +|.+.+.|+.+.. ++|+.||||.-. ..+.+..+
T Consensus 48 ~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~ 124 (257)
T COG1119 48 GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRET 124 (257)
T ss_pred cccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccc
Confidence 4899999999999999999999999999999999994 8999999998753 478999999753 45666778
Q ss_pred HHHHHHHHHH--hcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 77 VYEHLYFMAL--LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 77 v~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
|+|-+.-+.. .-.......+...+++..+++.+|+.+.+++.+++ ||-||||||.|||||+.+|++||||
T Consensus 125 v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~--------LS~Ge~rrvLiaRALv~~P~LLiLD 196 (257)
T COG1119 125 VRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS--------LSQGEQRRVLIARALVKDPELLILD 196 (257)
T ss_pred cceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhh--------cCHhHHHHHHHHHHHhcCCCEEEec
Confidence 8887765432 11111112244556788999999999999999555 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQ-RKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~-~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
|||+|||...++.+.+.|.+++.. .+.++|+|||+. +++...+++++++++|++++.|.
T Consensus 197 EP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 197 EPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred CccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999543 378999999997 58999999999999999998773
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=348.05 Aligned_cols=195 Identities=22% Similarity=0.245 Sum_probs=166.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|++||.+||+|+||||||||+++|.|+++|. +|+|.|||.++.. .+|++++||||++.+|+. |+++
T Consensus 1303 ~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~ 1378 (1522)
T TIGR00957 1303 RHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRM 1378 (1522)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHH
Confidence 4899999999999999999999999999999999994 7999999999975 478999999999999986 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||..... . + .+.+.++++..++. +..|+.+++. ...||||||||++|||||+++|+|||
T Consensus 1379 NLdp~~~-~-----s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~----G~~LSgGQrQrl~LARALLr~~~ILi 1444 (1522)
T TIGR00957 1379 NLDPFSQ-Y-----S----DEEVWWALELAHLKTFVSALPDKLDHECAEG----GENLSVGQRQLVCLARALLRKTKILV 1444 (1522)
T ss_pred HcCcccC-C-----C----HHHHHHHHHHcCcHHHHhhCccCCCceecCC----CCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9973211 1 1 12244555555543 4567778774 34599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||||+||+.+...|.+.|++. . +++|+|+|+|++. ....||||++|++|++++.|++++++.
T Consensus 1445 LDEaTSalD~~Te~~Iq~~l~~~-~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1445 LDEATAAVDLETDNLIQSTIRTQ-F-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999986 3 4799999999973 456799999999999999999998763
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=265.01 Aligned_cols=186 Identities=26% Similarity=0.370 Sum_probs=162.3
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
|+|++|.+||++.|+|||||||||||..+.|.+.+....+|++++|+++++. ..++++|++||++.+||.++|.+|+.
T Consensus 20 ~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~ 99 (213)
T COG4136 20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLL 99 (213)
T ss_pred eeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceE
Confidence 7999999999999999999999999999999998866679999999999864 45788999999999999999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
|+... ..+...+++.+..++++.||....++. +..||||||-||++-|+|+..|+.++||||+|.||.
T Consensus 100 fAlp~----~~KG~aRr~~a~aAL~~~gL~g~f~~d--------P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ 167 (213)
T COG4136 100 FALPA----TLKGNARRNAANAALERSGLDGAFHQD--------PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167 (213)
T ss_pred EecCc----ccccHHHHhhHHHHHHHhccchhhhcC--------hhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHH
Confidence 97532 233345667788999999999999988 666999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
.-+.++.++...-.+..|..+|.||||.. ++. ...||+-|
T Consensus 168 ALR~qfR~wVFs~~r~agiPtv~VTHD~~-Dvp-agsrVie~ 207 (213)
T COG4136 168 ALRDQFRQWVFSEVRAAGIPTVQVTHDLQ-DVP-AGSRVIEM 207 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEecccc-cCC-CCCeeeee
Confidence 99999999988765677999999999964 443 44555544
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=318.44 Aligned_cols=188 Identities=22% Similarity=0.276 Sum_probs=153.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+++.++||+|++.+|.. |+++
T Consensus 359 ~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~ 434 (555)
T TIGR01194 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGP 434 (555)
T ss_pred ccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhc
Confidence 4799999999999999999999999999999999995 8999999999864 467889999999887764 7777
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+. + . ...+.+.++++.+++.+..+..+.. +.. ...||||||||++|||||+.+|++|||||||++
T Consensus 435 n~~-------~-~----~~~~~~~~~~~~~~l~~~~~~lp~g-~~t-~~~LSgGq~qRlalaRall~~~~ililDE~ts~ 500 (555)
T TIGR01194 435 DEG-------E-H----ASLDNAQQYLQRLEIADKVKIEDGG-FST-TTALSTGQQKRLALICAWLEDRPILLFDEWAAD 500 (555)
T ss_pred ccc-------c-c----hhHHHHHHHHHHcCCchhhcccccc-cCC-cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 731 0 1 1123466788888887665433111 000 245999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH-HHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEE
Q psy2520 160 LDSFSASKLIRMMR-ELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 212 (290)
Q Consensus 160 LD~~~~~~i~~~l~-~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~ 212 (290)
||+.+...+.+.+. .+ +..|+|+|++||++. ..+.||+|++|++|+++..
T Consensus 501 LD~~~~~~i~~~l~~~~-~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 501 QDPAFKRFFYEELLPDL-KRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCHHHHHHHHHHHHHHH-HhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999988654 45 345899999999973 5678999999999998754
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=346.08 Aligned_cols=194 Identities=22% Similarity=0.355 Sum_probs=156.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEE-CCEecCc----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV-NGKPVEG----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i-~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++||++||+||||||||||+++|+|+++|+ +|+|++ +|.++.. .+|+.||||+|++.+|+ .||+
T Consensus 402 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~ 477 (1466)
T PTZ00265 402 KDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSIK 477 (1466)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecccccchh-ccHH
Confidence 4899999999999999999999999999999999994 899999 5677743 36788999999999887 4999
Q ss_pred HHHHHHHHhc-C--------ch------------------------------hhh---------HHHHHHHHHHHHHHcC
Q psy2520 79 EHLYFMALLK-L--------DR------------------------------RVK---------AYQRIALINSLLIELG 110 (290)
Q Consensus 79 e~l~~~~~~~-~--------~~------------------------------~~~---------~~~~~~~~~~~l~~~~ 110 (290)
|||.++.... . .. ... .....+.+.++++.++
T Consensus 478 eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~ 557 (1466)
T PTZ00265 478 NNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVL 557 (1466)
T ss_pred HHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhC
Confidence 9999863100 0 00 000 0011234566766666
Q ss_pred CCC-------ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Q psy2520 111 LMN-------SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183 (290)
Q Consensus 111 l~~-------~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ti 183 (290)
+.+ ..++.+++. ...||||||||++|||||+++|+||||||||++||+.++..+.+.|+++.++.|+|+
T Consensus 558 l~~~i~~lp~g~dT~vg~~----g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~Tv 633 (1466)
T PTZ00265 558 IHDFVSALPDKYETLVGSN----ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRIT 633 (1466)
T ss_pred cHHHHHhCccccCceeCCC----CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEE
Confidence 543 345666654 567999999999999999999999999999999999999999999999854458999
Q ss_pred EEEeCCCcHHHHhhcCeEEEEeCC
Q psy2520 184 LCTIHQPSSELIDMFDKIILLADS 207 (290)
Q Consensus 184 i~~tH~~~~~~~~~~d~v~~l~~G 207 (290)
|++||++. . .+.||+|++|++|
T Consensus 634 IiIsHrls-~-i~~aD~Iivl~~g 655 (1466)
T PTZ00265 634 IIIAHRLS-T-IRYANTIFVLSNR 655 (1466)
T ss_pred EEEeCCHH-H-HHhCCEEEEEeCC
Confidence 99999974 4 4789999999986
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=265.92 Aligned_cols=202 Identities=23% Similarity=0.353 Sum_probs=176.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---c-ccccEEEEccCC--CCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---K-FRSACGFMYQHD--LFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~-~~~~ig~v~Q~~--~~~~~lTv 77 (290)
..|||+++.|+.+||+|.||||||||.|+|+|..+| ++|+|.+||+++.. . ..+.|-++||++ .+-|.+.+
T Consensus 30 ~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P---TsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred cceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC---CCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 368999999999999999999999999999999999 48999999999854 2 346799999996 46677777
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
..-+.+...+. ......++.+++.+.|..+|| .+.++-. +..||-||||||++||||+.+|+++|.||.
T Consensus 107 GqiLd~PL~l~--T~~~~~~R~~~i~~TL~~VGL~Pdhan~~--------~~~la~~QKQRVaLARALIL~P~iIIaDeA 176 (267)
T COG4167 107 GQILDFPLRLN--TDLEPEQRRKQIFETLRMVGLLPDHANYY--------PHMLAPGQKQRVALARALILRPKIIIADEA 176 (267)
T ss_pred hhHhcchhhhc--ccCChHHHHHHHHHHHHHhccCccccccc--------hhhcCchhHHHHHHHHHHhcCCcEEEehhh
Confidence 77776655443 344556777888999999998 4566666 566999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.++||...+.++++++.++..+.|.+-|.|+.++ ..+..++|.|++|+.|++++.|++.+++
T Consensus 177 l~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred hhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCChhhhh
Confidence 9999999999999999999777899999999997 5789999999999999999999999765
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=268.51 Aligned_cols=152 Identities=30% Similarity=0.363 Sum_probs=127.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||+++.+ .+|+|.++|... ...+..++|++|
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~~~~~-~~~~~~~~~~~q---------------- 67 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLISFLP-KFSRNKLIFIDQ---------------- 67 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEECCccc-ccccccEEEEhH----------------
Confidence 58999999999999999999999999999853 269999988632 222345788876
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC--CCeEEEeCCCCCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTD--PALLLCDEPTTGL 160 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~--p~llllDEPtsgL 160 (290)
.++++.+++... .+++ +..||||||||++|||||+.+ |+++||||||++|
T Consensus 68 -------------------~~~l~~~~L~~~~~~~~--------~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 -------------------LQFLIDVGLGYLTLGQK--------LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred -------------------HHHHHHcCCCccccCCC--------cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 135677888653 6666 556999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
|+.++..+.+.|++++ +.|.|||++||++. ++ ..||++++|.+|..
T Consensus 121 D~~~~~~l~~~l~~~~-~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 121 HQQDINQLLEVIKGLI-DLGNTVILIEHNLD-VL-SSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEEeCCHH-HH-HhCCEEEEECCCCC
Confidence 9999999999999984 46899999999973 54 68999999976543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=316.92 Aligned_cols=185 Identities=25% Similarity=0.360 Sum_probs=155.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCC--CCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD--LFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~--~~~~~lTv~e~l 81 (290)
.|+||+|.+|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..+||++|+. .+.+..|+.+++
T Consensus 329 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~-------~~igy~~Q~~~~~l~~~~~~~~~~ 398 (638)
T PRK10636 329 DSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG-------IKLGYFAQHQLEFLRADESPLQHL 398 (638)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC-------EEEEEecCcchhhCCccchHHHHH
Confidence 5899999999999999999999999999999999984 899999742 2599999974 355667887765
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
.. .. . ......+.++++.+++. +..+++ +..|||||||||+||++|+.+|++|||||||++|
T Consensus 399 ~~---~~--~----~~~~~~~~~~L~~~~l~~~~~~~~--------~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~L 461 (638)
T PRK10636 399 AR---LA--P----QELEQKLRDYLGGFGFQGDKVTEE--------TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHL 461 (638)
T ss_pred HH---hC--c----hhhHHHHHHHHHHcCCChhHhcCc--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 32 11 1 11124567899999996 467777 4559999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 220 (290)
|+.++..+.++|+++ .| |||+||||+ .++..+||++++|++|+++ +.|+.++...
T Consensus 462 D~~~~~~l~~~L~~~---~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 462 DLDMRQALTEALIDF---EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CHHHHHHHHHHHHHc---CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999987 24 999999997 5788999999999999997 7899887643
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=339.82 Aligned_cols=193 Identities=24% Similarity=0.338 Sum_probs=165.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|++||.+||+|+||||||||+++|+|++++ +|+|+|||.++.. .+|+.++||||++.+|+. |+++
T Consensus 1236 ~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~----~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~ 1310 (1490)
T TIGR01271 1236 QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST----EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRK 1310 (1490)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCC----CcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHH
Confidence 489999999999999999999999999999999863 7999999999865 478999999999999985 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||..... .. .+.+.++++.+++. +..|+.+++.+ ..||||||||++|||||+++|+|||
T Consensus 1311 NLdp~~~------~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G----~nLSgGQrQrL~LARALLr~~~ILl 1376 (1490)
T TIGR01271 1311 NLDPYEQ------WS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG----YVLSNGHKQLMCLARSILSKAKILL 1376 (1490)
T ss_pred HhCcccC------CC----HHHHHHHHHHCCCHHHHHhCccccccccccCC----CcCCHHHHHHHHHHHHHhCCCCEEE
Confidence 9964321 11 23355677777663 34677777643 4599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.+...|.+.|++. . .++|||+++|++. ....||+|++|++|+++..|++.+++
T Consensus 1377 LDEaTS~lD~~Te~~I~~~L~~~-~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1377 LDEPSAHLDPVTLQIIRKTLKQS-F-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred EeCCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999987 3 4799999999973 45679999999999999999999876
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=272.04 Aligned_cols=196 Identities=24% Similarity=0.315 Sum_probs=172.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEcc-CCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQ-HDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q-~~~~~~~lTv~e~l~ 82 (290)
.||||++++||.+||+|+||||||||||+|+|.++|+ +|+|.++|+- +++.. ...+-|.+|.+||+.
T Consensus 44 ~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt---~G~v~v~G~v---------~~li~lg~Gf~pelTGreNi~ 111 (249)
T COG1134 44 KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVKVTGKV---------APLIELGAGFDPELTGRENIY 111 (249)
T ss_pred cCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC---CceEEEcceE---------ehhhhcccCCCcccchHHHHH
Confidence 5899999999999999999999999999999999995 8999999964 22222 234567899999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+...+... +..+..+.++++.+..+|.++.+.+ ++.+|.||+-|+++|.|...+|++||+||-.+--|+
T Consensus 112 l~~~~~G~---~~~ei~~~~~eIieFaELG~fi~~P--------vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~ 180 (249)
T COG1134 112 LRGLILGL---TRKEIDEKVDEIIEFAELGDFIDQP--------VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA 180 (249)
T ss_pred HHHHHhCc---cHHHHHHHHHHHHHHHHHHHHhhCc--------hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCH
Confidence 98766543 3455567788999999999999999 555999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 224 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 224 (290)
.-+++-.+.+.++ .+++.|||++|||+ ..+.++|||+++|++|++.+.|+++++++.+..
T Consensus 181 ~F~~K~~~rl~e~-~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 181 AFQEKCLERLNEL-VEKNKTIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred HHHHHHHHHHHHH-HHcCCEEEEEECCH-HHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 9999999999999 44579999999997 589999999999999999999999999886654
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=315.15 Aligned_cols=187 Identities=26% Similarity=0.373 Sum_probs=156.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCC-CCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD-LFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~-~~~~~lTv~e~l~ 82 (290)
.|+||+|.+|++++|+|||||||||||++|+|+++|+ +|+|.+ |.++ .+||++|+. .+++.+||.||+.
T Consensus 336 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~~------~i~y~~q~~~~l~~~~tv~e~l~ 405 (635)
T PRK11147 336 KDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTKL------EVAYFDQHRAELDPEKTVMDNLA 405 (635)
T ss_pred cCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCCc------EEEEEeCcccccCCCCCHHHHHH
Confidence 4799999999999999999999999999999999984 899998 5432 599999975 6889999999998
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
++..... .. .....+.++++.+++. +..+++ +..|||||||||+||++|+.+|++|||||||++||
T Consensus 406 ~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD 472 (635)
T PRK11147 406 EGKQEVM---VN--GRPRHVLGYLQDFLFHPKRAMTP--------VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472 (635)
T ss_pred hhccccc---cc--chHHHHHHHHHhcCCCHHHHhCh--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 7532110 01 0123467889999985 456777 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe-CCeEEE-EcCHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DSRTAF-IGSKDAA 218 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~-~G~i~~-~g~~~~~ 218 (290)
+.++..+.++|+++ +.|||+||||. .++..+||++++|+ +|++.. .|+.++-
T Consensus 473 ~~~~~~l~~~l~~~----~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 473 VETLELLEELLDSY----QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHHHHHHHHhC----CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999876 34999999996 57888999999998 899864 5776653
|
|
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=300.41 Aligned_cols=203 Identities=26% Similarity=0.417 Sum_probs=173.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++.||+.+||+||||+||||++++|..+..- .+|.|.|||+++.. .+|+.||.||||..+|++ |+..
T Consensus 555 ~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv---~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~y 630 (790)
T KOG0056|consen 555 SDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV---NSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILY 630 (790)
T ss_pred ecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc---cCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeee
Confidence 589999999999999999999999999999999887 48999999999975 589999999999888876 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
||.|+-.-..++++.+..+.+.+.+ +.+++.+..++++|+.+.+ |||||||||+|||+++.+|.+++|||.||+
T Consensus 631 NIryak~~AsneevyaAAkAA~IHd--rIl~fPegY~t~VGERGLk----LSGGEKQRVAiARtiLK~P~iIlLDEATSA 704 (790)
T KOG0056|consen 631 NIRYAKPSASNEEVYAAAKAAQIHD--RILQFPEGYNTRVGERGLK----LSGGEKQRVAIARTILKAPSIILLDEATSA 704 (790)
T ss_pred heeecCCCCChHHHHHHHHHhhHHH--HHhcCchhhhhhhhhcccc----cCCcchhhHHHHHHHhcCCcEEEEcchhhh
Confidence 9998743333333333333332332 2367889999999997664 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||..+.+.|...|.++++ |+|-|++.|.++ ..-.+|.|+++++|+|++.|..++++.
T Consensus 705 LDT~tER~IQaaL~rlca--~RTtIVvAHRLS--TivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 705 LDTNTERAIQAALARLCA--NRTTIVVAHRLS--TIVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred cCCccHHHHHHHHHHHhc--CCceEEEeeeeh--heecccEEEEEeCCeEeecCcHHHHHh
Confidence 999999999999999964 679999999974 345699999999999999999998763
|
|
| >KOG0059|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=325.22 Aligned_cols=203 Identities=29% Similarity=0.401 Sum_probs=183.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.++|+.+++||+.+++|||||||||++++|+|..+|+ +|+++++|.++.. ..++.+||+||.+.+.+.+|.+
T Consensus 582 ~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~r 658 (885)
T KOG0059|consen 582 RGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGR 658 (885)
T ss_pred cceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCccccccchhhhhhhcccCCchhhhhhhccHH
Confidence 5899999999999999999999999999999999994 8999999999864 2678899999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|++.+.+++++... ....+.++.+++.++|.+.++++++ .+|||+|+|+++|.||+.+|++++|||||+
T Consensus 659 EhL~~~arlrG~~~---~di~~~v~~ll~~~~L~~~~~~~~~--------~ySgG~kRkLs~aialig~p~vi~LDEPst 727 (885)
T KOG0059|consen 659 EHLEFYARLRGLPR---SDIGSAIEKLLRLVGLGPYANKQVR--------TYSGGNKRRLSFAIALIGDPSVILLDEPST 727 (885)
T ss_pred HHHHHHHHHcCCCh---hHHHHHHHHHHHHcCChhhhccchh--------hCCCcchhhHHHHHHHhcCCCEEEecCCCC
Confidence 99999998876432 2334457899999999999999954 499999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 222 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 222 (290)
|+||.+++.+++++.++. ++|+.||++||.+ +|+..+|||+.+|.+|++...|++.++...+
T Consensus 728 GmDP~arr~lW~ii~~~~-k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 728 GLDPKARRHLWDIIARLR-KNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred CCCHHHHHHHHHHHHHHH-hcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHhhc
Confidence 999999999999999994 5566999999997 6899999999999999999999999887544
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=312.90 Aligned_cols=186 Identities=23% Similarity=0.313 Sum_probs=151.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||+|.+|++++|+|||||||||||++|+|+++|. +|+|.+++. ..+||++|++ ++.+++.++..+
T Consensus 526 ~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~-------~~igyv~Q~~--~~~l~~~~~~~~ 593 (718)
T PLN03073 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK-------VRMAVFSQHH--VDGLDLSSNPLL 593 (718)
T ss_pred eccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc-------eeEEEEeccc--cccCCcchhHHH
Confidence 4799999999999999999999999999999999994 799998752 3699999975 244566666443
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
......+. .. .+.+.++++.+++.. ..+++ +..|||||||||+||++|+.+|++|||||||++||+
T Consensus 594 ~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~~--------~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~ 660 (718)
T PLN03073 594 YMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQP--------MYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDL 660 (718)
T ss_pred HHHHhcCC-CC----HHHHHHHHHHCCCChHHhcCC--------ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 22111111 11 234678999999974 56777 456999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAAL 219 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 219 (290)
.++..+++.|.+. .| |||++|||+ .++..+||++++|++|+++ +.|++++..
T Consensus 661 ~s~~~l~~~L~~~---~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 661 DAVEALIQGLVLF---QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred HHHHHHHHHHHHc---CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 9999999888765 24 999999997 5788899999999999998 778877543
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=263.96 Aligned_cols=139 Identities=27% Similarity=0.369 Sum_probs=122.6
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 86 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~ 86 (290)
++++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+ ++|++|+..
T Consensus 19 ~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~--------i~~~~q~~~---------------- 71 (177)
T cd03222 19 LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT--------PVYKPQYID---------------- 71 (177)
T ss_pred CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE--------EEEEcccCC----------------
Confidence 4799999999999999999999999999999994 7999999864 788887421
Q ss_pred hcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHH
Q psy2520 87 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSAS 166 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 166 (290)
||||||||++|||+|+.+|+++||||||++||+.++.
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEE--cCHH
Q psy2520 167 KLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI--GSKD 216 (290)
Q Consensus 167 ~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~--g~~~ 216 (290)
.+.+.|++++++.+.|||++||++ .++..+||++++|+++-.++. |.|.
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999998544348999999997 577889999999998766544 5544
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=310.19 Aligned_cols=191 Identities=27% Similarity=0.300 Sum_probs=151.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.||||.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.. .++|++|++..+ ..|+.+++.-
T Consensus 18 ~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~~-------~i~~~~q~~~~~-~~~~~~~v~~ 86 (638)
T PRK10636 18 DNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGNW-------QLAWVNQETPAL-PQPALEYVID 86 (638)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCCC-------EEEEEecCCCCC-CCCHHHHHHH
Confidence 5899999999999999999999999999999999985 8999998742 389999864333 2466555432
Q ss_pred HHHhc-------------Cc----hhh-------hHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHH
Q psy2520 84 MALLK-------------LD----RRV-------KAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRL 138 (290)
Q Consensus 84 ~~~~~-------------~~----~~~-------~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv 138 (290)
..... .. ... .......++.++++.+|+. +..+++ +..|||||||||
T Consensus 87 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~--------~~~LSgGerqRv 158 (638)
T PRK10636 87 GDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP--------VSDFSGGWRMRL 158 (638)
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc--------hhhcCHHHHHHH
Confidence 10000 00 000 0011234678899999997 467877 445999999999
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHHH
Q psy2520 139 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDA 217 (290)
Q Consensus 139 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 217 (290)
+||++|+.+|++|||||||++||+.++..+.++|+++ +.|||+||||. .++..+||++++|++|+++ +.|+...
T Consensus 159 ~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 159 NLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDR-DFLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCH-HHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 9999999999999999999999999999999999876 35999999997 5788999999999999996 5677764
Q ss_pred H
Q psy2520 218 A 218 (290)
Q Consensus 218 ~ 218 (290)
.
T Consensus 234 ~ 234 (638)
T PRK10636 234 F 234 (638)
T ss_pred H
Confidence 3
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=255.19 Aligned_cols=128 Identities=37% Similarity=0.508 Sum_probs=118.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++||++++||+++|+||||||||||+++|+|+++|. +|+|+++|+ ..++|++|
T Consensus 17 ~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~-------~~i~~~~~---------------- 70 (144)
T cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST-------VKIGYFEQ---------------- 70 (144)
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe-------EEEEEEcc----------------
Confidence 4799999999999999999999999999999999984 899999985 36899988
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
||+||+||++|||||+.+|+++||||||++||+.
T Consensus 71 ----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~ 104 (144)
T cd03221 71 ----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE 104 (144)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
++..+.+.|+++ +.|+|++||++ .++..+||++++|++|+
T Consensus 105 ~~~~l~~~l~~~----~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 105 SIEALEEALKEY----PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHc----CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 999999999886 36999999997 57888999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=307.35 Aligned_cols=191 Identities=26% Similarity=0.313 Sum_probs=149.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.||||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.. .++|++|.+......+|.+++..
T Consensus 20 ~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~~-------~~~~l~q~~~~~~~~~v~~~~~~ 89 (635)
T PRK11147 20 DNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQDL-------IVARLQQDPPRNVEGTVYDFVAE 89 (635)
T ss_pred eCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCCC-------EEEEeccCCCCCCCCCHHHHHHH
Confidence 4899999999999999999999999999999999984 7999998732 26788876543334566665431
Q ss_pred HHH--------h-------cCc---------hh----h---hHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCCh
Q psy2520 84 MAL--------L-------KLD---------RR----V---KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132 (290)
Q Consensus 84 ~~~--------~-------~~~---------~~----~---~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSg 132 (290)
+.. . ... .. . .......++.++++.+|+. .+++ +.+|||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~--------~~~LSg 159 (635)
T PRK11147 90 GIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAA--------LSSLSG 159 (635)
T ss_pred hhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCc--------hhhcCH
Confidence 100 0 000 00 0 0001234578899999996 3666 455999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-E
Q psy2520 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-F 211 (290)
Q Consensus 133 GqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~ 211 (290)
||||||+||++|+.+|+||||||||++||+.++..+.++|+++ . .|||+||||. .++..+||++++|++|+++ +
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~-~---~tvlivsHd~-~~l~~~~d~i~~L~~G~i~~~ 234 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF-Q---GSIIFISHDR-SFIRNMATRIVDLDRGKLVSY 234 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC-C---CEEEEEeCCH-HHHHHhcCeEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987 2 4999999997 5788899999999999997 4
Q ss_pred EcCHHHHH
Q psy2520 212 IGSKDAAL 219 (290)
Q Consensus 212 ~g~~~~~~ 219 (290)
.|+..+.+
T Consensus 235 ~g~~~~~~ 242 (635)
T PRK11147 235 PGNYDQYL 242 (635)
T ss_pred cCCHHHHH
Confidence 58877543
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=308.67 Aligned_cols=177 Identities=28% Similarity=0.324 Sum_probs=148.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEE-----------ECCEecCcc------ccccEEEEc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR-----------VNGKPVEGK------FRSACGFMY 66 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~-----------i~G~~~~~~------~~~~ig~v~ 66 (290)
++++ .+++|++++|+||||||||||||+|+|+++|+ +|+|. ++|+++... .+..+++.+
T Consensus 91 ~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~ 166 (590)
T PRK13409 91 YGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKP 166 (590)
T ss_pred ecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecc
Confidence 5677 79999999999999999999999999999995 79997 999887431 123466666
Q ss_pred cCCCCCCC---CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHH
Q psy2520 67 QHDLFSPS---LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 143 (290)
Q Consensus 67 Q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~a 143 (290)
|...++|. .||.|++.+. .....+.++++.++|.+..++. +.+|||||||||+||+|
T Consensus 167 q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~--------~~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 167 QYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRD--------ISELSGGELQRVAIAAA 226 (590)
T ss_pred cchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCC--------hhhCCHHHHHHHHHHHH
Confidence 65433332 3999988631 1123567899999999888888 45599999999999999
Q ss_pred HHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCC
Q psy2520 144 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 207 (290)
Q Consensus 144 L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G 207 (290)
|+.+|++|||||||++||+.++..+.++|+++ .+ |.|||++||++ .++..++|++++|+++
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l-~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIREL-AE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999 45 89999999997 5788999999999863
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=257.90 Aligned_cols=170 Identities=29% Similarity=0.397 Sum_probs=149.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc---ccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~---~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.++||++.+||++.|.||||||||||||+|+|+..|. +|+|+++|.++... +++.+-|+-.++.+-+.+||+||
T Consensus 19 ~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~EN 95 (209)
T COG4133 19 SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALEN 95 (209)
T ss_pred cceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHH
Confidence 4789999999999999999999999999999999995 89999999988652 45678888888889999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.|........ ....+.++++.+||....|.++ .+||-|||+||+|||-++..+++.||||||++|
T Consensus 96 L~F~~~~~~~~------~~~~i~~Al~~vgL~g~~dlp~--------~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taL 161 (209)
T COG4133 96 LHFWQRFHGSG------NAATIWEALAQVGLAGLEDLPV--------GQLSAGQQRRVALARLWLSPAPLWILDEPFTAL 161 (209)
T ss_pred HHHHHHHhCCC------chhhHHHHHHHcCcccccccch--------hhcchhHHHHHHHHHHHcCCCCceeecCccccc
Confidence 99988765421 1234678999999999999994 459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
|......+-.++..-+ .+|-.||.+||++.
T Consensus 162 Dk~g~a~l~~l~~~H~-~~GGiVllttHq~l 191 (209)
T COG4133 162 DKEGVALLTALMAAHA-AQGGIVLLTTHQPL 191 (209)
T ss_pred CHHHHHHHHHHHHHHh-cCCCEEEEecCCcc
Confidence 9999999999999874 45778999999974
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=308.67 Aligned_cols=183 Identities=21% Similarity=0.272 Sum_probs=145.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++||+++|+||||||||||+++|+|+++|. +|+|.+++ ++.++|++|++.+++. |++||+.+
T Consensus 469 ~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~~ 537 (659)
T TIGR00954 469 ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA-------KGKLFYVPQRPYMTLG-TLRDQIIY 537 (659)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC-------CCcEEEECCCCCCCCc-CHHHHHhc
Confidence 4799999999999999999999999999999999884 79998864 4579999999988876 99999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcC-CCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS-ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~-~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+........ .....+.+.++++.+++.+..+++.|-+. ......||||||||++|||||+.+|+++||||||++||+
T Consensus 538 ~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~ 615 (659)
T TIGR00954 538 PDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV 615 (659)
T ss_pred CCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 532110000 00112346788889998776554321000 000356999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
.++..+.+.+++. |.|+|++||++. ..+.||++++|+
T Consensus 616 ~~~~~l~~~l~~~----~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 616 DVEGYMYRLCREF----GITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHHHHHHHHHHHc----CCEEEEEeCchH--HHHhCCEEEEEe
Confidence 9999999988653 789999999973 468999999997
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=322.31 Aligned_cols=192 Identities=26% Similarity=0.398 Sum_probs=152.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++| .|+|++|++.+++. ||+||+.|
T Consensus 443 ~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eNI~~ 509 (1490)
T TIGR01271 443 KNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG---------RISFSPQTSWIMPG-TIKDNIIF 509 (1490)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC---------EEEEEeCCCccCCc-cHHHHHHh
Confidence 4899999999999999999999999999999999994 89999988 39999999988875 99999998
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
+.... ........+...+.+.++.+ .+...+.+|+. ...|||||||||+||||++.+|+++||||||++||+.
T Consensus 510 g~~~~-~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~----g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 510 GLSYD-EYRYTSVIKACQLEEDIALF--PEKDKTVLGEG----GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred ccccc-hHHHHHHHHHHhHHHHHHhc--cccccccccCc----CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 74321 00000000011112223222 22234455553 4569999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 164 SASKLIRM-MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 164 ~~~~i~~~-l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
++.++++. +..+ . +|+|+|++||++. .+ ..||++++|++|+++..|+++++.
T Consensus 583 ~~~~i~~~~l~~~-~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 583 TEKEIFESCLCKL-M-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHH-h-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999974 6666 3 3899999999974 44 569999999999999999998875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=325.80 Aligned_cols=186 Identities=23% Similarity=0.364 Sum_probs=153.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|+.++|+||+|||||||+++|+|.++|. +|.+. .+++.|+||+|++.+++. |++|||.|
T Consensus 634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~--------~~~~~Iayv~Q~p~Lf~g-TIreNI~f 701 (1495)
T PLN03232 634 SDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV--------VIRGSVAYVPQVSWIFNA-TVRENILF 701 (1495)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE--------EecCcEEEEcCccccccc-cHHHHhhc
Confidence 4899999999999999999999999999999999984 67663 246789999999998864 99999999
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcC-------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+... .. +++.++++..+ +.+..++.+|+.+. .||||||||++||||++.+|+|+|||||
T Consensus 702 g~~~------~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~----~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 702 GSDF------ES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGV----NISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred CCcc------CH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCc----ccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 7421 11 12233333333 34556788888644 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRM-MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~-l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+||+.+..++++. ++.. . .++|+|++||++. ....||+|++|++|+++..|+.+++.
T Consensus 768 tSaLD~~t~~~I~~~~l~~~-l-~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 768 LSALDAHVAHQVFDSCMKDE-L-KGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred ccccCHHHHHHHHHHHhhhh-h-cCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999988765 5544 2 4799999999973 56789999999999999999998875
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=324.99 Aligned_cols=185 Identities=23% Similarity=0.379 Sum_probs=154.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCc-cEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIID-GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~-G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|+||++++|+.++|+||+|||||||+++|.|.++| .+ |+|.+ +..|+||+|++.+++ .|++|||.
T Consensus 634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~---~~GG~I~l---------~~~Iayv~Q~p~Lfn-gTIreNI~ 700 (1622)
T PLN03130 634 SNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP---RSDASVVI---------RGTVAYVPQVSWIFN-ATVRDNIL 700 (1622)
T ss_pred eceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc---CCCceEEE---------cCeEEEEcCccccCC-CCHHHHHh
Confidence 589999999999999999999999999999999998 48 89985 456999999999886 49999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|+... . .+++.++++..+| .+..++.+|+.+ ..|||||||||+||||++.+|+++||||
T Consensus 701 fg~~~------d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G----~~LSGGQKQRIaLARAly~~~~IlLLDE 766 (1622)
T PLN03130 701 FGSPF------D----PERYERAIDVTALQHDLDLLPGGDLTEIGERG----VNISGGQKQRVSMARAVYSNSDVYIFDD 766 (1622)
T ss_pred CCCcc------c----HHHHHHHHHHhCcHHHHHhCCCcccccccCCC----CCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence 97431 1 1223344444443 445678888864 4599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~-~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+||+.+..++++ .++.+ . +|+|+|++||++ .....||+|++|++|+++..|+.+++.
T Consensus 767 ptSALD~~~~~~I~~~~l~~~-l-~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 767 PLSALDAHVGRQVFDKCIKDE-L-RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred CccccCHHHHHHHHHHHhhHH-h-cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999988864 56655 2 479999999997 356789999999999999999998875
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=251.38 Aligned_cols=197 Identities=26% Similarity=0.346 Sum_probs=157.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe---cC-----c-----cccccEEEEccCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP---VE-----G-----KFRSACGFMYQHDL 70 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~---~~-----~-----~~~~~ig~v~Q~~~ 70 (290)
.||||++.|||+++|+|.|||||||||+||++.+.|+ .|+|.|.-.+ .. + -.|...|||.|+|.
T Consensus 23 ~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~ 99 (258)
T COG4107 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR 99 (258)
T ss_pred cccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcc
Confidence 5899999999999999999999999999999999995 7999886532 21 1 14567999999863
Q ss_pred --CCCC----CCHHHHHHH-HHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHH
Q psy2520 71 --FSPS----LTVYEHLYF-MALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFAT 142 (290)
Q Consensus 71 --~~~~----lTv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~ 142 (290)
+-.. -.+-|-++- +.+-+ ...++.+.+|++.+.+.. ..|.. +..+||||+||+.|||
T Consensus 100 DGLRm~VSAG~NiGERlma~G~RHY-------G~iR~~a~~WL~~VEI~~~RiDD~--------PrtFSGGMqQRLQiAR 164 (258)
T COG4107 100 DGLRMQVSAGGNIGERLMAIGARHY-------GNIRAEAQDWLEEVEIDLDRIDDL--------PRTFSGGMQQRLQIAR 164 (258)
T ss_pred ccceeeeccCCccchhHHhhhhhhh-------hhHHHHHHHHHHhcccCcccccCc--------ccccchHHHHHHHHHH
Confidence 2221 233333322 22111 112345678999999854 34555 6779999999999999
Q ss_pred HHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 143 ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 143 aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.|+..|+++++||||.|||...+.+++++++.+..+-|..++++|||+ ..+.-++||.++|++|+++..|-++.++
T Consensus 165 nLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred HhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeecCCCEeccccccccc
Confidence 999999999999999999999999999999999888899999999997 4555579999999999999999887543
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=249.38 Aligned_cols=138 Identities=38% Similarity=0.655 Sum_probs=124.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++||++.+|++++|+||||||||||+++|+|+++|. +|+|+++|.++.. .+++.++|++|
T Consensus 16 ~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q------------ 80 (157)
T cd00267 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQ------------ 80 (157)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHhceEEEee------------
Confidence 4789999999999999999999999999999999884 7999999988653 23466888887
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
||+||+||++||++++.+|+++||||||++
T Consensus 81 --------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 81 --------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 599999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
||+.++..+.+.|++++. .+.|++++||++ .++..+||++++|++|+
T Consensus 111 lD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 111 LDPASRERLLELLRELAE-EGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 999999999999999854 478999999997 57888899999999874
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=322.90 Aligned_cols=193 Identities=26% Similarity=0.431 Sum_probs=153.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++| .++||+|++.+++ .||+||+.|
T Consensus 655 ~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g---------~i~yv~Q~~~l~~-~Ti~eNI~~ 721 (1522)
T TIGR00957 655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG---------SVAYVPQQAWIQN-DSLRENILF 721 (1522)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC---------EEEEEcCCccccC-CcHHHHhhc
Confidence 4899999999999999999999999999999999994 89999987 4999999988764 699999998
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCC-CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+... .. ........+..+.+.++. .+..++.+|+. ..+||||||||++||||++.+|+++||||||++||+
T Consensus 722 g~~~--~~--~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~----g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 722 GKAL--NE--KYYQQVLEACALLPDLEILPSGDRTEIGEK----GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred CCcc--CH--HHHHHHHHHhCCHHHHHhcCCCCCceecCC----CCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 6421 11 111111111122333333 23345566664 456999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 163 FSASKLIRMMRELT-SQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 163 ~~~~~i~~~l~~l~-~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.+...+++.+.+.. ..+++|+|++||++. . ...||+|++|++|+++..|+++++.
T Consensus 794 ~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~-~-l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 794 HVGKHIFEHVIGPEGVLKNKTRILVTHGIS-Y-LPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred HHHHHHHHHHhhhhhhhcCCEEEEEeCChh-h-hhhCCEEEEecCCeEEeeCCHHHHH
Confidence 99999999987531 124789999999973 4 4569999999999999999998875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=281.56 Aligned_cols=203 Identities=30% Similarity=0.427 Sum_probs=170.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.++||++.+|+.+||+||+|+||||++++|..++.++ +|.|.++|+++.. .+|+.||.|||+..+|.+ |.+.
T Consensus 280 ~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~y 355 (497)
T COG5265 280 NGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAY 355 (497)
T ss_pred cCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHH
Confidence 4799999999999999999999999999999999985 8999999999864 478999999999888876 8999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.|+..-....+.........+...++ .+.+..++.||+.+.. |||||||||+|||+++.+|++|+|||.||+
T Consensus 356 ni~ygr~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgerglk----lSggekqrvaiar~ilk~p~il~~deatsa 429 (497)
T COG5265 356 NIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGLK----LSGGEKQRVAIARTILKNPPILILDEATSA 429 (497)
T ss_pred HHhccCccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchheee----ccCchHHHHHHHHHHhcCCCEEEEehhhhH
Confidence 9998754332222222222233334443 3577889999987654 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||..+.+.|...|++. . .|+|.+++.|.++ - .--+|.|++|++|+|++.|+.++++.
T Consensus 430 ldt~te~~iq~~l~~~-~-~~rttlviahrls-t-i~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 430 LDTHTEQAIQAALREV-S-AGRTTLVIAHRLS-T-IIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred hhhhHHHHHHHHHHHH-h-CCCeEEEEeehhh-h-ccCCceEEEeeCCEEEecCcHHHHHH
Confidence 9999999999999998 4 4889999999974 3 34589999999999999999997764
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=318.65 Aligned_cols=190 Identities=25% Similarity=0.394 Sum_probs=149.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++|. +|+|.+. +.|||++|++.++ +.||+||+.|
T Consensus 677 ~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~---------~~i~yv~Q~~~l~-~~Tv~enI~~ 743 (1560)
T PTZ00243 677 RDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE---------RSIAYVPQQAWIM-NATVRGNILF 743 (1560)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC---------CeEEEEeCCCccC-CCcHHHHHHc
Confidence 3889999999999999999999999999999999984 7999863 4699999998876 4699999998
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
+.... ........+...+.+.++.+ |+....+++ ...|||||||||+|||||+.+|+++||||||++||
T Consensus 744 ~~~~~-~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~--------g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD 814 (1560)
T PTZ00243 744 FDEED-AARLADAVRVSQLEADLAQLGGGLETEIGEK--------GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814 (1560)
T ss_pred CChhh-HHHHHHHHHHhhhHHHHHHhhccchHHhcCC--------CCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 53210 00011111111233445544 444333333 45699999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMM-RELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l-~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+++.+ ... . .|+|+|++||++. . ...||+|++|++|++++.|+.++++
T Consensus 815 ~~~~~~i~~~~~~~~-~-~~~TvIlvTH~~~-~-~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 815 AHVGERVVEECFLGA-L-AGKTRVLATHQVH-V-VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHHHHHHHHHHHHHh-h-CCCEEEEEeCCHH-H-HHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999988754 333 2 4899999999973 4 4789999999999999999998865
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=286.47 Aligned_cols=191 Identities=27% Similarity=0.337 Sum_probs=157.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+|+.+.+|+.+||||+||||||||||+|+|...|+ +|+|...+. ..++|++|++.+.+..||.+.+..
T Consensus 20 ~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~-------~~v~~l~Q~~~~~~~~tv~~~v~~ 89 (530)
T COG0488 20 ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG-------LRVGYLSQEPPLDPEKTVLDYVIE 89 (530)
T ss_pred cCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC-------ceEEEeCCCCCcCCCccHHHHHHh
Confidence 4899999999999999999999999999999999985 799987542 259999999999999999998876
Q ss_pred HHHhcC--chhhhH-------------------------HHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHH
Q psy2520 84 MALLKL--DRRVKA-------------------------YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 136 (290)
Q Consensus 84 ~~~~~~--~~~~~~-------------------------~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrq 136 (290)
+..-.. ...... .....++..++..+|+... +++ +++||||||.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~--------~~~LSGG~r~ 160 (530)
T COG0488 90 GFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRP--------VSSLSGGWRR 160 (530)
T ss_pred hhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCc--------hhhcCHHHHH
Confidence 532100 000000 1112456788888998877 777 4559999999
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCH
Q psy2520 137 RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSK 215 (290)
Q Consensus 137 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~ 215 (290)
||+||++|+.+|++|||||||+.||..+...+.+.|++. .| |+|+|||| ..++-+.|++|+-++.|++. |.|..
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHD-RYFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCC-HHHHHHHhhheEEecCCceeEecCCH
Confidence 999999999999999999999999999999999999876 36 99999999 57899999999999999886 55766
Q ss_pred HHH
Q psy2520 216 DAA 218 (290)
Q Consensus 216 ~~~ 218 (290)
+..
T Consensus 236 ~~~ 238 (530)
T COG0488 236 SSY 238 (530)
T ss_pred HHH
Confidence 543
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=252.22 Aligned_cols=185 Identities=24% Similarity=0.321 Sum_probs=130.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHH-HHHHcCCCCCCCCccEEEEC-----------C-EecCc--ccc-ccEEEEcc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLL-AALSQRLPDDCIIDGDIRVN-----------G-KPVEG--KFR-SACGFMYQ 67 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl-~~l~G~~~~~~~~~G~I~i~-----------G-~~~~~--~~~-~~ig~v~Q 67 (290)
.+|||++++||+++|+||||||||||+ ..+.. +|++.+. | -.... ..+ ...++..|
T Consensus 12 ~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T cd03270 12 KNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAID 83 (226)
T ss_pred ccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCCceEEec
Confidence 589999999999999999999999995 44431 1222110 0 00000 111 23444445
Q ss_pred CCC--CCCCCCHHH---HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHH
Q psy2520 68 HDL--FSPSLTVYE---HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFA 141 (290)
Q Consensus 68 ~~~--~~~~lTv~e---~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia 141 (290)
++. +.+..+|.. ...+...+. ....... ..++++.+++.+ ..+++ +.+|||||||||+||
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~-~~~~l~~~~l~~~~~~~~--------~~~LSgG~~qrv~la 149 (226)
T cd03270 84 QKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRE-RLGFLVDVGLGYLTLSRS--------APTLSGGEAQRIRLA 149 (226)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHH-HHHHHHHCCCCcccccCc--------cCcCCHHHHHHHHHH
Confidence 432 234445542 222211111 1111112 246889999976 46777 556999999999999
Q ss_pred HHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEc
Q psy2520 142 TELLTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIG 213 (290)
Q Consensus 142 ~aL~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g 213 (290)
++|+.+| ++|||||||+|||+.++..+.+.|++++ +.|.|||++||++ .++ .+||++++| ++|+|+++|
T Consensus 150 ral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~-~~g~tii~itH~~-~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 150 TQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLR-DLGNTVLVVEHDE-DTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEEeCH-HHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 9999998 5999999999999999999999999994 4589999999997 354 699999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=235.75 Aligned_cols=132 Identities=41% Similarity=0.623 Sum_probs=115.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|||+++++|++++|+||||||||||+++|+|..+| .+|+|.++|+++.. ..++.++|++|++.+++.+||.|
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence 479999999999999999999999999999999988 48999999999865 36788999999999999999999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
| .....+.++++.+++.+..++.++.. +..||+||||||+||+||+.+|+++||||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~----~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQR----ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSC----GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------cccccccccccccccccccccccccc----cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 11233577888888887777776442 35699999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=252.76 Aligned_cols=192 Identities=28% Similarity=0.353 Sum_probs=148.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHH-----cCC-----CCC--C------CCccEEEECCEecCccc-------
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALS-----QRL-----PDD--C------IIDGDIRVNGKPVEGKF------- 58 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~-----G~~-----~~~--~------~~~G~I~i~G~~~~~~~------- 58 (290)
.|||..|+.|.+++|+|+||||||||++.+. ..+ .|. . ...--|.++..++....
T Consensus 12 ~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ty 91 (261)
T cd03271 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPATY 91 (261)
T ss_pred CCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHHH
Confidence 4789999999999999999999999998552 110 010 0 01124777877774311
Q ss_pred -------cc----------------cEEEEccCCCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-c
Q psy2520 59 -------RS----------------ACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-S 114 (290)
Q Consensus 59 -------~~----------------~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~ 114 (290)
|+ .+.|..++...+..+||.|++.|+...+ ...++.++++.+||.. .
T Consensus 92 ~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~~l~ 162 (261)
T cd03271 92 TGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLGYIK 162 (261)
T ss_pred HHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCchhh
Confidence 10 1445555555567899999999876432 1234567999999987 4
Q ss_pred cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTD---PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 115 ~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~---p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
.++. +..|||||+||++||++|+.+ |+++||||||+|||+..+..+++.|+++. +.|.|||+++|++
T Consensus 163 l~~~--------~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~-~~g~tvIiitH~~- 232 (261)
T cd03271 163 LGQP--------ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLV-DKGNTVVVIEHNL- 232 (261)
T ss_pred hcCc--------cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-
Confidence 6776 456999999999999999996 79999999999999999999999999994 5589999999997
Q ss_pred HHHHhhcCeEEEE------eCCeEEEEcCH
Q psy2520 192 SELIDMFDKIILL------ADSRTAFIGSK 215 (290)
Q Consensus 192 ~~~~~~~d~v~~l------~~G~i~~~g~~ 215 (290)
..+ ..||+++.| ++|++++.|++
T Consensus 233 ~~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DVI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 344 689999999 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=291.06 Aligned_cols=200 Identities=24% Similarity=0.264 Sum_probs=142.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------------------cccccEEEE
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------------------KFRSACGFM 65 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------------------~~~~~ig~v 65 (290)
.|+||++.+|+++||+|||||||||||++|+|........+|+|.+.++.+.. .++..++|+
T Consensus 194 ~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~ 273 (718)
T PLN03073 194 VDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLV 273 (718)
T ss_pred ECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999998641101136888765543210 012336677
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcC-ch---------------hhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCC
Q psy2520 66 YQHDLFSPSLTVYEHLYFMALLKL-DR---------------RVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKV 128 (290)
Q Consensus 66 ~Q~~~~~~~lTv~e~l~~~~~~~~-~~---------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~ 128 (290)
+|++.+... ++.++... ..... .. .........++.+++..+|+. +..+++ +.
T Consensus 274 ~q~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~--------~~ 343 (718)
T PLN03073 274 AQQRELEFE-TETGKGKG-ANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKA--------TK 343 (718)
T ss_pred HHHHHhhhc-cccccccc-ccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCc--------hh
Confidence 775432211 11111100 00000 00 000112234567788889986 445666 45
Q ss_pred CCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 129 ~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
+|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||. .++..+||++++|++|+
T Consensus 344 ~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~-~~l~~~~d~i~~l~~g~ 418 (718)
T PLN03073 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHAR-EFLNTVVTDILHLHGQK 418 (718)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCH-HHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999886 57999999996 57888999999999999
Q ss_pred EE-EEcCHHHH
Q psy2520 209 TA-FIGSKDAA 218 (290)
Q Consensus 209 i~-~~g~~~~~ 218 (290)
+. +.|+.+..
T Consensus 419 i~~~~g~~~~~ 429 (718)
T PLN03073 419 LVTYKGDYDTF 429 (718)
T ss_pred EEEeCCCHHHH
Confidence 96 67776643
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=246.57 Aligned_cols=166 Identities=18% Similarity=0.262 Sum_probs=130.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC------CCCccEEEECCEecCc-cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD------CIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~------~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lT 76 (290)
.++++++.+| +++|+||||||||||+++|+|++++. ....|++.++|++... ..++.++|+||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 3689999999 99999999999999999999997653 1124578888877643 2356799999987655
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH----hCCCeEE
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL----TDPALLL 152 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~----~~p~lll 152 (290)
|.. . . .+++.++++. .+..++. +..||||||||++||++|+ .+|+++|
T Consensus 89 ------~~~--~-----~----~~~~~~~l~~---~~~~~~~--------~~~LS~G~kqrl~la~~l~~~~~~~~~ill 140 (197)
T cd03278 89 ------YSI--I-----S----QGDVSEIIEA---PGKKVQR--------LSLLSGGEKALTALALLFAIFRVRPSPFCV 140 (197)
T ss_pred ------eeE--E-----e----hhhHHHHHhC---CCccccc--------hhhcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 110 0 0 1234556655 4455666 4569999999999999997 4669999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
|||||++||+..+..+++.|+++ ++ +.|||++||++ .. ..+||+++.|..
T Consensus 141 lDEP~~~LD~~~~~~l~~~l~~~-~~-~~tiIiitH~~-~~-~~~~d~v~~~~~ 190 (197)
T cd03278 141 LDEVDAALDDANVERFARLLKEF-SK-ETQFIVITHRK-GT-MEAADRLYGVTM 190 (197)
T ss_pred EeCCcccCCHHHHHHHHHHHHHh-cc-CCEEEEEECCH-HH-HhhcceEEEEEe
Confidence 99999999999999999999998 44 68999999997 34 578999999874
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=289.88 Aligned_cols=188 Identities=28% Similarity=0.425 Sum_probs=158.2
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
-.||||+|++|+.+||+||-|||||+||.+|.|-++. .+|+|.++|. ++||+|.+.+++ .||+|||.
T Consensus 537 L~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~gs---------iaYv~Q~pWI~n-gTvreNIL 603 (1381)
T KOG0054|consen 537 LKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNGS---------VAYVPQQPWIQN-GTVRENIL 603 (1381)
T ss_pred ccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcCe---------EEEeccccHhhC-CcHHHhhh
Confidence 3689999999999999999999999999999999987 5899999885 999999998876 49999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
|+..+. .++.+++++...| ...-.+.||+.++ +||||||||++||||+.++++++|||.
T Consensus 604 FG~~~d----------~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi----nLSGGQKqRIsLARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 604 FGSPYD----------EERYDKVIKACALKKDLEILPFGDLTEIGERGI----NLSGGQKQRISLARAVYQDADIYLLDD 669 (1381)
T ss_pred cCcccc----------HHHHHHHHHHccCHhHHhhcCCCCcceecCCcc----CCcHhHHHHHHHHHHHhccCCEEEEcC
Confidence 986431 1223344444433 3445677898765 499999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+|++|.....++++-.-.- .-+++|+|++||+. +..+.||.|++|++|+|...|+.+|+.+
T Consensus 670 plSAVDahvg~~if~~ci~~-~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 670 PLSAVDAHVGKHIFEECIRG-LLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred cchhhhHhhhHHHHHHHHHh-hhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 99999999999988655443 23579999999985 5678999999999999999999999874
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=287.64 Aligned_cols=202 Identities=23% Similarity=0.306 Sum_probs=164.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|+|||.+||+|..|||||||+++|..+..|. +|+|.|||.++.. .+|++++.+||+|.+|.. ||+.
T Consensus 1157 k~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~ 1232 (1381)
T KOG0054|consen 1157 KGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRF 1232 (1381)
T ss_pred cCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-cccc
Confidence 5899999999999999999999999999999999984 7999999999976 589999999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
||.=... +....+.+.-......+.++ .+....|..+.+.+ .++|-||||.++|||||+++++||+|||.|++
T Consensus 1233 NLDPf~e-~sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~egG----~N~SvGQRQLlCLARALLr~skILvLDEATAs 1305 (1381)
T KOG0054|consen 1233 NLDPFDE-YSDDEIWEALERCQLKDVVS--SLPGGLDSEVSEGG----ENFSVGQRQLLCLARALLRKSKILVLDEATAS 1305 (1381)
T ss_pred ccCcccc-cCHHHHHHHHHHhChHHHHh--hCCcCCCceecCCC----ccCChHHHHHHHHHHHHhccCCEEEEeccccc
Confidence 9864322 11111111111112223333 33445677777753 45999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+|+.+-..|.+.|++- -.++|||.+.|+++ -+. -+|||+||++|+++++|+|.++++
T Consensus 1306 VD~~TD~lIQ~tIR~~--F~dcTVltIAHRl~-TVm-d~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1306 VDPETDALIQKTIREE--FKDCTVLTIAHRLN-TVM-DSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred CChHHHHHHHHHHHHH--hcCCeEEEEeeccc-hhh-hcCeEEEeeCCeEeecCChHHHHh
Confidence 9999999999999985 34799999999986 343 489999999999999999997763
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=238.00 Aligned_cols=194 Identities=27% Similarity=0.408 Sum_probs=166.2
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.+|+.+..||++-+||||||||||||-.++|+.+. +|+|.++|.++.. ++.+.-+|+.|+..-...|.|+.+
T Consensus 17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred ccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 46889999999999999999999999999999875 7999999999864 466778899987655556789998
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh-------CCCeEEE
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT-------DPALLLC 153 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~-------~p~llll 153 (290)
+.+. .+ ...+...+.++...++|.+...+. +..|||||.|||-+|...++ ..++|||
T Consensus 93 L~L~----qP----~~~~a~~i~~i~~~L~l~DKL~Rs--------~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll 156 (248)
T COG4138 93 LTLH----QP----DKTRTELLNDVAGALALDDKLGRS--------TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156 (248)
T ss_pred hhhc----Cc----hHHHHHHHHHHHhhhcccchhhhh--------hhhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence 8753 22 234455678888899999888887 55699999999999988763 3479999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||.++||...+..+-.+|.+++ ..|.+||+++||++ ...+.+|++++++.|++...|..++++.
T Consensus 157 DEP~~~LDvAQ~~aLdrll~~~c-~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 157 DEPMNSLDVAQQSALDRLLSALC-QQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred cCCCcchhHHHHHHHHHHHHHHH-hCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 99999999999999999999996 46999999999985 6889999999999999999999998763
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=256.60 Aligned_cols=199 Identities=25% Similarity=0.425 Sum_probs=168.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccC---CCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQH---DLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~---~~~~~~l 75 (290)
.|+||++++||+++|.|-=|||+|-|+++|.|..++ .+|+|.++|+++.. .++..++|||.| ..++..+
T Consensus 276 ~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 276 RDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred eCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC---CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 589999999999999999999999999999998776 37999999998853 356789999987 5788999
Q ss_pred CHHHHHHHHHHhcCc-h-hhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 76 TVYEHLYFMALLKLD-R-RVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
+|.+|+.+....+.. . ........+.++++.+.+++. ...+.. +..||||.||||.|||.|+.+|++||
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~--------v~~LSGGNQQKVvlarwL~~~p~vLi 424 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP--------IGTLSGGNQQKVVLARWLATDPKVLI 424 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch--------hhcCCchhhhhHHHHHHHhcCCCEEE
Confidence 999999987322111 1 234444456678899999884 344555 45599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 215 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~ 215 (290)
|||||.|+|.-++.+|.++|++++ ++|++||++|.++ .|+..+||||++|.+|+++..-+.
T Consensus 425 lDEPTRGIDVGAK~eIy~li~~lA-~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 425 LDEPTRGIDVGAKAEIYRLIRELA-AEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred ECCCCcCcccchHHHHHHHHHHHH-HCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEecc
Confidence 999999999999999999999995 4599999999997 589999999999999999875433
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-32 Score=227.07 Aligned_cols=187 Identities=26% Similarity=0.356 Sum_probs=152.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe--cC--c-------c-ccccEEEEccCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP--VE--G-------K-FRSACGFMYQHDLF 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~--~~--~-------~-~~~~ig~v~Q~~~~ 71 (290)
.|+||+++.||++++=|||||||||||++|-|.+.|+ +|+|++.-+. +. . . .++.||||.|--..
T Consensus 28 ~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv 104 (235)
T COG4778 28 RNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV 104 (235)
T ss_pred eceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence 4899999999999999999999999999999999995 8999985432 21 1 1 34679999998777
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCe
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~l 150 (290)
.|.....|-++-.+.-+. ...+....++..++.++++.+. +.-. +..+||||||||.|||.++.+=+|
T Consensus 105 iPRV~aLdVvaePll~~g---v~~~~a~~~a~~Ll~rLnlperLW~La--------PaTFSGGEqQRVNIaRgfivd~pI 173 (235)
T COG4778 105 IPRVSALDVVAEPLLARG---VPREVARAKAADLLTRLNLPERLWSLA--------PATFSGGEQQRVNIARGFIVDYPI 173 (235)
T ss_pred ccCcchHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCCHHHhcCC--------CcccCCchheehhhhhhhhccCce
Confidence 787777776665443332 2344455667899999999664 4444 566999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
|||||||++||..++.-++++|.+- +.+|..+|=+-|| .+.-...|||++-|..
T Consensus 174 LLLDEPTasLDa~Nr~vVveli~e~-Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 174 LLLDEPTASLDATNRAVVVELIREA-KARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred EEecCCcccccccchHHHHHHHHHH-HhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999997 6679999999999 3444558999998864
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=260.26 Aligned_cols=182 Identities=33% Similarity=0.372 Sum_probs=151.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCC-CCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD-LFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~-~~~~~lTv~e~l~ 82 (290)
.++||.+.+|+.+||+||||||||||||+|+|...|. +|+|.+.-. -.+||..|+. .+.+..|+.|++.
T Consensus 339 ~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~-------v~igyf~Q~~~~l~~~~t~~d~l~ 408 (530)
T COG0488 339 KDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET-------VKIGYFDQHRDELDPDKTVLEELS 408 (530)
T ss_pred cCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc-------eEEEEEEehhhhcCccCcHHHHHH
Confidence 4899999999999999999999999999999999884 799987432 3599999985 4457789999886
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
-...- . . ...+...|..|++.. ...++ +..||||||.|+.+|+.++.+|.+|||||||+.||
T Consensus 409 ~~~~~----~-~----e~~~r~~L~~f~F~~~~~~~~--------v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLD 471 (530)
T COG0488 409 EGFPD----G-D----EQEVRAYLGRFGFTGEDQEKP--------VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471 (530)
T ss_pred hhCcc----c-c----HHHHHHHHHHcCCChHHHhCc--------hhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCC
Confidence 43211 0 0 244678999999954 45666 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE-EcCHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF-IGSKDAA 218 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 218 (290)
..+...+.+.|..+ . | |||+||||. .++.++|++++.+.+ ++.. .|..++.
T Consensus 472 i~s~~aLe~aL~~f-~--G-tvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 472 IESLEALEEALLDF-E--G-TVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHHHHHHHHHHHhC-C--C-eEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 99999999999987 2 3 999999995 689999999999998 5544 4777643
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-32 Score=241.78 Aligned_cols=181 Identities=16% Similarity=0.169 Sum_probs=137.5
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCE-ecCc------cccccEEEEccCC---------CCC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK-PVEG------KFRSACGFMYQHD---------LFS 72 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~-~~~~------~~~~~ig~v~Q~~---------~~~ 72 (290)
.+.+| +++|+||||||||||+++|++++.+. ..|++.+.|. ++-. ..+..|+++||++ .+.
T Consensus 22 ~~~~~-~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~ 98 (251)
T cd03273 22 GFDPQ-FNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENY 98 (251)
T ss_pred cCCCC-eEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCC
Confidence 34445 99999999999999999999998763 2467877776 3211 1234799999984 345
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC--------------------CccCcccCCcCCCCCCCCCh
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM--------------------NSQHTRIGSSSITQKVVLSG 132 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--------------------~~~~~~v~~~~~~~~~~LSg 132 (290)
+.+||.+++.+......... ......+.+.++++.+++. +..+++ +.+||+
T Consensus 99 ~~ltV~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~--------~~~lS~ 169 (251)
T cd03273 99 PEITVTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKES--------LTELSG 169 (251)
T ss_pred ceEEEEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhccc--------ccccCH
Confidence 67899888866432211000 0112235678899999985 233445 556999
Q ss_pred HHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 133 GERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 133 GqrqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
|||||++||++|+ .+|+++|+||||++||+..+..+++.|+++ .+ |.|+|++||+. ++.+.||+++-+.
T Consensus 170 G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~-~~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 170 GQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH-FK-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-cC-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9999999999998 578999999999999999999999999998 44 78999999994 6778899998875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=231.48 Aligned_cols=175 Identities=20% Similarity=0.332 Sum_probs=124.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC----------------CCCCCCCcc--------EEEECCEe----cC-c--ccccc
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR----------------LPDDCIIDG--------DIRVNGKP----VE-G--KFRSA 61 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~----------------~~~~~~~~G--------~I~i~G~~----~~-~--~~~~~ 61 (290)
|++++|+||||||||||+++|+++ ..++ +| +|.+++.+ +. . .+++.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ 99 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRT 99 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCCCccCCCCCEEEEEEE
Confidence 789999999999999999999843 3332 34 55565532 11 1 35667
Q ss_pred EEEEccCCCCCC-CCCHHHHHHHHHHhcCchhhhHH-HHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHH
Q psy2520 62 CGFMYQHDLFSP-SLTVYEHLYFMALLKLDRRVKAY-QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLS 139 (290)
Q Consensus 62 ig~v~Q~~~~~~-~lTv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ 139 (290)
++|++|+..+++ ..|..|...+............. .... .+.+.+++....+.. +..||||||||++
T Consensus 100 ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg---~i~~l~~l~~~~~~~--------~~~lS~G~~~r~~ 168 (243)
T cd03272 100 IGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQG---KINSLTNMKQDEQQE--------MQQLSGGQKSLVA 168 (243)
T ss_pred EECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcC---chHHhhhcccccccc--------ccccCHHHHHHHH
Confidence 999999877776 45776665554433211100000 0011 223334455455555 4569999999999
Q ss_pred HHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 140 FATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 140 ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
||++|+. +|+++||||||++||+.++..+++.|+++ .+ +.+||+++|++ ++.++||++++|.
T Consensus 169 la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~-~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 169 LALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL-SD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH-hC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 9999974 58999999999999999999999999998 44 78889888874 5789999999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=225.75 Aligned_cols=165 Identities=27% Similarity=0.355 Sum_probs=125.0
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHH----cCCCCCCCCccEEEECCEecCc-cccccEEEEccCC-----CCCCCC
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALS----QRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHD-----LFSPSL 75 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~----G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~-----~~~~~l 75 (290)
.++.+.+| +++|+|||||||||||++|. |..+|+ +|.+..+.+.+.. ..+..|+++||++ .....+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 45677888 99999999999999999995 887774 4555422222222 2456799999987 334556
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHH------HHHHHHHHhCCC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR------LSFATELLTDPA 149 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqR------v~ia~aL~~~p~ 149 (290)
|+++++.+.. .. .+.+.+ ++. +..||+||+|| ++||++++.+|+
T Consensus 92 ~~~~~~~~~~---------~~----~~~~~~---------~~~--------~~~LS~G~~~~~~la~rlala~al~~~p~ 141 (204)
T cd03240 92 AILENVIFCH---------QG----ESNWPL---------LDM--------RGRCSGGEKVLASLIIRLALAETFGSNCG 141 (204)
T ss_pred hHhhceeeec---------hH----HHHHHH---------hcC--------ccccCccHHHHHHHHHHHHHHHHhccCCC
Confidence 8888886531 01 112222 344 45699999996 789999999999
Q ss_pred eEEEeCCCCCCCHHHHH-HHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 150 LLLCDEPTTGLDSFSAS-KLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 150 llllDEPtsgLD~~~~~-~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
++|+||||++||+..+. .+.++|++++++.|.|||++||++ . ....||+++.|.+
T Consensus 142 illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~-~-~~~~~d~i~~l~~ 197 (204)
T cd03240 142 ILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE-E-LVDAADHIYRVEK 197 (204)
T ss_pred EEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH-H-HHhhCCEEEEEee
Confidence 99999999999999999 999999999544478999999996 3 4578999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=221.93 Aligned_cols=178 Identities=19% Similarity=0.133 Sum_probs=122.1
Q ss_pred ceEEEEe-CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECC-Ee-cCc-cccccEEEEccCCCCCCCCCHHHH
Q psy2520 5 ELTGAAL-SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG-KP-VEG-KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 5 ~is~~~~-~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G-~~-~~~-~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
+|+|... +|++++|+|||||||||||++|++.+... ..+....+. .. +.. .....|+++||++.... ++..+
T Consensus 19 ~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 19 VIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred EEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 4565543 48899999999999999999999644211 123333221 01 111 24456999999753211 11111
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh----------CCCe
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT----------DPAL 150 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~----------~p~l 150 (290)
. ........+. ..+...++.+..++. +..||+||+||++||++|+. +|++
T Consensus 95 ~----------gl~~~~~~~~--~~l~~g~l~~~l~~~--------~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ 154 (213)
T cd03279 95 R----------GLDYDQFTRI--VLLPQGEFDRFLARP--------VSTLSGGETFLASLSLALALSEVLQNRGGARLEA 154 (213)
T ss_pred c----------CCCHHHHHHh--hhhhhcchHHHhcCC--------ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCE
Confidence 1 0111111110 123333445555666 45599999999999999985 5789
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
+||||||++||+.++..+.+.|++++ +++.|||++||++ ..+..++|++++|++|.
T Consensus 155 lllDEp~~~lD~~~~~~~~~~l~~~~-~~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 155 LFIDEGFGTLDPEALEAVATALELIR-TENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 99999999999999999999999994 4589999999997 57888999999999885
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-31 Score=235.37 Aligned_cols=168 Identities=15% Similarity=0.164 Sum_probs=125.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcCch--
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-- 91 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-- 91 (290)
++++|+||||||||||+++|.-. +|.+.....++++++++|+..+++.+|+.+++.+........
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLL 92 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHH
Confidence 79999999999999999999722 222221112356999999988889899988877654321100
Q ss_pred ---hhhHHHHHH--HHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCH
Q psy2520 92 ---RVKAYQRIA--LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT----DPALLLCDEPTTGLDS 162 (290)
Q Consensus 92 ---~~~~~~~~~--~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~----~p~llllDEPtsgLD~ 162 (290)
......... ...++++.+++.+..+++ +..||+|||||++||+|++. .|++++|||||+|||+
T Consensus 93 ~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~--------~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~ 164 (212)
T cd03274 93 KSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN--------ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDF 164 (212)
T ss_pred HHCCcCCCCCceEEcCCcEEEeeccccccccc--------hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCH
Confidence 000000000 014566677887777777 45599999999999999975 4799999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
.++..+.+.|+++ ++ +.|+|++||++ ++.++||++++|..
T Consensus 165 ~~~~~l~~~l~~~-~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 165 RNVSIVANYIKER-TK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHHHHH-cC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999999998 44 57899999984 68899999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=262.96 Aligned_cols=138 Identities=27% Similarity=0.267 Sum_probs=111.2
Q ss_pred CCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHH---h
Q psy2520 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELL---T 146 (290)
Q Consensus 71 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~---~ 146 (290)
.+...||.|++.+...-.........+..+++ ++++.+||.+. .++. +.+|||||+|||+||++|+ .
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~--------~~tLSGGE~QRV~LAraL~~~~~ 829 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP--------LSSLSGGEIQRLKLAYELLAPSK 829 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc--------cccCCHHHHHHHHHHHHHhhcCC
Confidence 45678999999987542211011122233344 58899999876 6777 4569999999999999998 6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe------CCeEEEEcCHHHHHH
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA------DSRTAFIGSKDAALA 220 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~ 220 (290)
+|++|||||||+|||+.++..++++|++++ +.|.|||+++|++ ..+ ++||++++|. +|++++.|+++++..
T Consensus 830 ~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~-~~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 830 KPTLYVLDEPTTGLHTHDIKALIYVLQSLT-HQGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999999999994 5699999999997 455 8999999996 789999999988753
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=245.33 Aligned_cols=125 Identities=30% Similarity=0.394 Sum_probs=105.6
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC---Ce
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP---AL 150 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p---~l 150 (290)
+||.|++.|+..... .....++++.+||.. ..++. +..|||||+||+.||++|+.+| ++
T Consensus 792 ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~--------~~tLSgGEkQRl~LAraL~~~p~~~~l 854 (943)
T PRK00349 792 MTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQP--------ATTLSGGEAQRVKLAKELSKRSTGKTL 854 (943)
T ss_pred CcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCC--------cccCCHHHHHHHHHHHHHhcCCCCCeE
Confidence 688888888654321 122357899999976 46776 4559999999999999999999 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 219 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~ 219 (290)
+||||||+|||+..+..+++.|+++. +.|.|||+++|++ ..+ ..||+++.| .+|++++.|+++++.
T Consensus 855 lILDEPtsGLD~~~~~~L~~~L~~l~-~~G~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 855 YILDEPTTGLHFEDIRKLLEVLHRLV-DKGNTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999999994 5689999999997 344 689999999 799999999998764
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=223.84 Aligned_cols=201 Identities=25% Similarity=0.326 Sum_probs=170.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec-Cc-----cccccEEEEccCC---CCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-EG-----KFRSACGFMYQHD---LFSPS 74 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~-~~-----~~~~~ig~v~Q~~---~~~~~ 74 (290)
.+|||++.+||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|+++ .. ..+..+||||.|. .+.+.
T Consensus 275 ~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~ 351 (501)
T COG3845 275 KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD 351 (501)
T ss_pred eeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccCCHHHHHhcCCccCChhhccCccccC
Confidence 4799999999999999999999999999999999874 69999999997 22 2346799999974 67889
Q ss_pred CCHHHHHHHHHHhcC----chhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 75 LTVYEHLYFMALLKL----DRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 75 lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
+|+.||+.+...... .......+..+.+.++++.+++.. ....+ +.+||||++||+-+||.|..+|+
T Consensus 352 ~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~--------a~~LSGGNqQK~IlaREl~~~p~ 423 (501)
T COG3845 352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP--------ARSLSGGNQQKLILARELARRPD 423 (501)
T ss_pred ccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc--------hhhcCCcceehhhhhhhhccCCC
Confidence 999999988654211 112334455667889999998862 23333 56699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
+||+.+||.|||..+...+.+.|.+. ++.|+.|+++|-++ +++..+||||.+|++|+++...++++
T Consensus 424 lLI~~qPTrGLDvgA~~~I~~~l~e~-r~~G~AVLLiS~dL-DEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 424 LLIAAQPTRGLDVGAIEFIHERLLEL-RDAGKAVLLISEDL-DEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred EEEEcCCCccccHHHHHHHHHHHHHH-HhcCCEEEEEehhH-HHHHHhhheeeeeeCCceeccccccc
Confidence 99999999999999999999999999 56799999999997 68999999999999999998777764
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-28 Score=209.44 Aligned_cols=210 Identities=20% Similarity=0.252 Sum_probs=162.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCC-CccEEEECCEecCc----c----ccccEEEEccCCC--CC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCI-IDGDIRVNGKPVEG----K----FRSACGFMYQHDL--FS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~-~~G~I~i~G~~~~~----~----~~~~ig~v~Q~~~--~~ 72 (290)
+++|++++.||+-+++|.||||||-..++|+|..+.+.. +..+..+++.++-. + ..+.|+++||++. +-
T Consensus 24 D~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLD 103 (330)
T COG4170 24 DRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLD 103 (330)
T ss_pred eeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcC
Confidence 579999999999999999999999999999999876431 23445666666532 1 3356899999974 44
Q ss_pred CCCCHHHHHHHHHHh---cCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 73 PSLTVYEHLYFMALL---KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
|.-+|...+.-.... +......-..+++++-++|.++|+.+..|---.. +.+|.-||-|+|.||.|++.+|+
T Consensus 104 PS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SY-----P~ElTeGE~QKVMIA~A~AnqPr 178 (330)
T COG4170 104 PSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSY-----PYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred hHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhC-----cchhccCcceeeeeehhhccCCc
Confidence 554554443322111 1111111122445678999999997654421111 56799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+||.||||+++||.++.+++.+|.++++.+|+||++++||+ ..+.++||++-+|.-|+-+..++.++++
T Consensus 179 LLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~~ESa~~e~l~ 247 (330)
T COG4170 179 LLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQTVESAPSEELV 247 (330)
T ss_pred eEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEecccccccchhHHh
Confidence 99999999999999999999999999877899999999998 4799999999999999999999988776
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=206.36 Aligned_cols=168 Identities=17% Similarity=0.181 Sum_probs=120.1
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
++++.+.+| +.+|+|||||||||||.+|...+.... . ....|..+.. .....|.+.+|+..+++
T Consensus 14 ~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------ 82 (198)
T cd03276 14 HLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------ 82 (198)
T ss_pred eeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccC------
Confidence 467778887 889999999999999999884332210 0 1111221111 12345888888766554
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHH----HhCCCeEEEeC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL----LTDPALLLCDE 155 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL----~~~p~llllDE 155 (290)
| .. ... ....+.++++. .+..+++ +.+||+|||||++||++| +.+|+++||||
T Consensus 83 ~-------~~-~~~----~~~~~~~~l~~---~~~~~~~--------~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 83 N-------PL-CVL----SQDMARSFLTS---NKAAVRD--------VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred C-------cC-CHH----HHHHHHHHhcc---ccccCCc--------ccccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 1 00 001 12345566665 5556666 556999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQ--RKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~--~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
||+|||+..+..+.++|++++++ .+.|||++||++. ++..+ |+|.+|..++
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLASS-DDVKVFRMKD 192 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-ccccc-cceeEEEecC
Confidence 99999999999999999998544 2468999999974 56654 9999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-28 Score=222.25 Aligned_cols=183 Identities=24% Similarity=0.357 Sum_probs=148.5
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||++++.||++-|+|.||||||||++.|+|+++|. +|+|++||+++.. ++|+-++-||-|-.+|+.+--.|+
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~ 417 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG 417 (546)
T ss_pred ceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc
Confidence 589999999999999999999999999999999995 8999999999975 477778888877777664211111
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC---ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
+ .....++.+++++.+.+ ..|..+. .-.||.|||||+++..||+-+-+|+++||=-
T Consensus 418 -------~--------as~q~i~~~LqrLel~~ktsl~d~~fs------~~kLStGQkKRlAll~AllEeR~Ilv~DEWA 476 (546)
T COG4615 418 -------K--------ASPQLIEKWLQRLELAHKTSLNDGRFS------NLKLSTGQKKRLALLLALLEERDILVLDEWA 476 (546)
T ss_pred -------C--------CChHHHHHHHHHHHHhhhhcccCCccc------ccccccchHHHHHHHHHHHhhCCeEEeehhh
Confidence 0 11233456666666643 2333322 2459999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
+..||.-++.+...+--+-++.|+||+.+||| + ..+..+||++.|.+|+++..-
T Consensus 477 ADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHD-d-~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 477 ADQDPAFRREFYQVLLPLLKEQGKTIFAISHD-D-HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred ccCChHHHHHHHHHHhHHHHHhCCeEEEEecC-c-hhhhhHHHHHHHhcCceeecc
Confidence 99999999999988777668889999999998 3 578899999999999998653
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=236.27 Aligned_cols=124 Identities=29% Similarity=0.370 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh---CCCe
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLT---DPAL 150 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~---~p~l 150 (290)
+||.|.+.|+..+.. .....++|+.+||.. ..++. +..|||||+||+.||++|+. +|++
T Consensus 790 ~tv~e~~~f~~~~~~---------i~~~l~~L~~~gL~~l~l~~~--------~~tLSgGe~QRl~LA~aL~~~~~~p~l 852 (924)
T TIGR00630 790 MTVEEAYEFFEAVPS---------ISRKLQTLCDVGLGYIKLGQP--------ATTLSGGEAQRIKLAKELSKRSTGRTL 852 (924)
T ss_pred CcHHHHHHHHHhccc---------hhHHHHHHHHcCCCchhhcCc--------cccCCHHHHHHHHHHHHHhhcCCCCCE
Confidence 566666666543321 112457888999975 35666 45699999999999999997 5999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAA 218 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 218 (290)
+||||||+|||+..+..+++.|+++. +.|.|||+++|++ ..+ ..||++++| ++|++++.|+++++
T Consensus 853 lILDEPtsgLD~~~~~~L~~~L~~l~-~~G~TVIvi~H~~-~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 853 YILDEPTTGLHFDDIKKLLEVLQRLV-DQGNTVVVIEHNL-DVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999999994 5689999999997 344 689999999 79999999998864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=224.80 Aligned_cols=177 Identities=31% Similarity=0.375 Sum_probs=138.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.+.++.+++|+.+.|.||||||||||+|+|+|+-|-. +|+|.+- ....+-|+||.|.+... |.+|-+.+
T Consensus 410 ~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P-------~~~~~lflpQ~PY~p~G-tLre~l~Y 478 (604)
T COG4178 410 SELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP-------ADSALLFLPQRPYLPQG-TLREALCY 478 (604)
T ss_pred ccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC-------CCCceEEecCCCCCCCc-cHHHHHhC
Confidence 4689999999999999999999999999999998764 6877653 12358999999886554 99999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCC-cCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS-SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~-~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
...... ...+.+.++|.++||.+..++.=.. ++ -..||+||||||++||.|+++|++++|||.|++||+
T Consensus 479 P~~~~~-------~~d~~l~~vL~~vgL~~L~~rl~~~~~W---~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 479 PNAAPD-------FSDAELVAVLHKVGLGDLAERLDEEDRW---DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred CCCCCC-------CChHHHHHHHHHcCcHHHHHHHhccCcH---hhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 532211 1124466788888886654332110 01 134999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
.+...+++.+++-. .+.|||.|.|.+ .+..+.++.+-+.
T Consensus 549 ~~e~~l~q~l~~~l--p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 549 ETEDRLYQLLKEEL--PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHHhhC--CCCEEEEeccch--hhHHHHhhheeec
Confidence 99999999998842 479999999986 4778877766654
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=215.74 Aligned_cols=169 Identities=23% Similarity=0.307 Sum_probs=137.5
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL 87 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~ 87 (290)
++|..||+++++||||-||||+.++|+|.++|+ +|+ .. .-+|+|=||--.--...||.+.+.-....
T Consensus 362 G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~------~~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EE------DLKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred CeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Cc------cceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 456778999999999999999999999999995 676 11 23488999853333567999987654432
Q ss_pred cCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHH
Q psy2520 88 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASK 167 (290)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~ 167 (290)
..... -...++++-++|.+..++.+. +|||||.|||+||.+|..+++++|||||++.||...+..
T Consensus 429 ~~~~s-------~~~~ei~~pl~l~~i~e~~v~--------~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~ 493 (591)
T COG1245 429 AFGSS-------YFKTEIVKPLNLEDLLERPVD--------ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRII 493 (591)
T ss_pred hcccc-------hhHHhhcCccchHHHHhcccc--------cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHH
Confidence 11111 112467888999999999954 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 168 LIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 168 i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
+.+.|+++..++++|.++|.||+. .+--++||+++..
T Consensus 494 vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 494 VAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence 999999997778999999999974 5556789998885
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=207.89 Aligned_cols=186 Identities=16% Similarity=0.202 Sum_probs=118.5
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe-c-Cc-------cccccEEEEc--cCCCC-CCC
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP-V-EG-------KFRSACGFMY--QHDLF-SPS 74 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~-~-~~-------~~~~~ig~v~--Q~~~~-~~~ 74 (290)
++.+.++ +++|+|||||||||||.+|++.+.+. .|++...+.. + .. .....+...| |++.. ...
T Consensus 17 ~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~ 92 (247)
T cd03275 17 VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFR 92 (247)
T ss_pred eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEE
Confidence 3444455 99999999999999999999988653 3555443211 0 00 0122333444 33211 111
Q ss_pred CCHHHHH-HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccC--------------cccCCcCCCCCCCCChHHHHHHH
Q psy2520 75 LTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH--------------TRIGSSSITQKVVLSGGERKRLS 139 (290)
Q Consensus 75 lTv~e~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--------------~~v~~~~~~~~~~LSgGqrqRv~ 139 (290)
.++.+.. .|. ... .... .+.++++++.+|+..... ..+.......+..||+|||||++
T Consensus 93 ~~~~~~~~~~~--ing-k~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~ 165 (247)
T cd03275 93 RIITGGSSSYR--ING-KVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAA 165 (247)
T ss_pred EEEECCceEEE--ECC-EEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHH
Confidence 1111110 000 011 1111 233567888888853211 11000000013669999999999
Q ss_pred HHHHHHhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 140 FATELLTD----PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 140 ia~aL~~~----p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
||++++.+ |+++||||||++||+..+..+.+.|++++ +.|.+||++||++ ++...||++++|..
T Consensus 166 la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~-~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 166 LALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQA-GPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred HHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhc-cCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 99999975 89999999999999999999999999994 4589999999995 46789999999874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-27 Score=221.56 Aligned_cols=182 Identities=25% Similarity=0.301 Sum_probs=142.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCC--CCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD--LFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~--~~~~~lTv~e~l 81 (290)
.+++|-+..++.+++|||||||||||||+++|.+.|. .|.|.-.- ...+++.-|+. .+.-..++.|++
T Consensus 407 ~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~-------H~~~~~y~Qh~~e~ldl~~s~le~~ 476 (614)
T KOG0927|consen 407 KKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHS-------HNKLPRYNQHLAEQLDLDKSSLEFM 476 (614)
T ss_pred hhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---cccccccc-------cccchhhhhhhHhhcCcchhHHHHH
Confidence 4678899999999999999999999999999999994 78886432 23355555652 333345666655
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
.-. ... ..+.+.+..++.++||. +..+.+ +++||+|||.||.+|+.++.+|.+|+|||||++|
T Consensus 477 ~~~---~~~-----~~~~e~~r~ilgrfgLtgd~q~~p--------~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhL 540 (614)
T KOG0927|consen 477 MPK---FPD-----EKELEEMRSILGRFGLTGDAQVVP--------MSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHL 540 (614)
T ss_pred HHh---ccc-----cchHHHHHHHHHHhCCCccccccc--------hhhcccccchhHHHHHHHhcCCcEEEecCCCcCC
Confidence 421 111 22345678899999997 445555 5669999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKD 216 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~ 216 (290)
|..+...+-+.|.++ . -+||++|||.. .+.++++++++..+|.+. +.|+..
T Consensus 541 Di~tid~laeaiNe~-~---Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 541 DIETIDALAEAINEF-P---GGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred CchhHHHHHHHHhcc-C---Cceeeeechhh-HHHHHHHHhHhhccCceeecCccHH
Confidence 999999999999887 2 37999999974 789999999999988765 456554
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-26 Score=215.57 Aligned_cols=197 Identities=24% Similarity=0.251 Sum_probs=134.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
-|++|++.+|+-++|+|||||||||+|++|+|...|... .=.++.-.+++.....+.+-++.+. .-..+.-+.+
T Consensus 92 kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~-~~d~y~ls~e~~ps~~~av~~v~~~-----~~~e~~rle~ 165 (614)
T KOG0927|consen 92 KDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE-HIDFYLLSREIEPSEKQAVQAVVME-----TDHERKRLEY 165 (614)
T ss_pred eeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc-ccchhhhcccCCCchHHHHHHHhhh-----hHHHHHHHHH
Confidence 378899999999999999999999999999999888421 1223333333322111111111100 0000000110
Q ss_pred HHH-hc----------------CchhhhHHHHHHHHHHHHHHcCC-CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH
Q psy2520 84 MAL-LK----------------LDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 145 (290)
Q Consensus 84 ~~~-~~----------------~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~ 145 (290)
... +. .......+....++.++|..+|. .+..++. +.+||||+|.|++|||+|.
T Consensus 166 ~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~--------~~~~SgGwrmR~aLAr~Lf 237 (614)
T KOG0927|consen 166 LAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKK--------VKDLSGGWRMRAALARALF 237 (614)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHH--------hhccCchHHHHHHHHHHHh
Confidence 000 00 00011112233445667777766 4566777 5669999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE-EEEcCHHHH
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT-AFIGSKDAA 218 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i-~~~g~~~~~ 218 (290)
.+|.+|||||||++||+.+...+-+.|.+. .. + ++++++|.- +.+-.+|.+|+-|++++. .|.|+.+..
T Consensus 238 ~kP~LLLLDEPtnhLDleA~~wLee~L~k~-d~-~-~lVi~sh~Q-Dfln~vCT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 238 QKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-DR-I-ILVIVSHSQ-DFLNGVCTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred cCCCEEEecCCccCCCHHHHHHHHHHHHhc-cC-c-eEEEEecch-hhhhhHhhhhheecccceeeecCCHHHH
Confidence 999999999999999999999999999887 32 2 899999995 689999999999999994 566777654
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=188.23 Aligned_cols=144 Identities=19% Similarity=0.134 Sum_probs=107.7
Q ss_pred ceEEEEeCCe-EEEEECCCCChHHHHHHHHH--------cCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCC
Q psy2520 5 ELTGAALSGT-LVAIMGASGAGKSTLLAALS--------QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 5 ~is~~~~~Ge-~~~IiGpnGaGKSTLl~~l~--------G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~l 75 (290)
++|+++.+|+ +++|+|||||||||||++|+ |...|. ... ..++|+.|....+
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~---~~~-------------~~~~~~~~~~~~l--- 79 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA---AEG-------------SSLPVFENIFADI--- 79 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc---ccc-------------ccCcCccEEEEec---
Confidence 6899999994 89999999999999999998 443331 000 1233433321100
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
+..+..+.. ...+|+||||++.+++++ .+|+++|+||
T Consensus 80 ----------------------------------g~~~~l~~~--------~s~fs~g~~~~~~i~~~~-~~p~llllDE 116 (200)
T cd03280 80 ----------------------------------GDEQSIEQS--------LSTFSSHMKNIARILQHA-DPDSLVLLDE 116 (200)
T ss_pred ----------------------------------CchhhhhcC--------cchHHHHHHHHHHHHHhC-CCCcEEEEcC
Confidence 000111112 234999999999999884 8999999999
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 156 PTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 156 PtsgLD~~~~~~i~-~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
|++|+|+..+..+. ..++.+ .+.|.++|++||+. ++..+||+++.|.+|++.+.+
T Consensus 117 p~~glD~~~~~~i~~~~l~~l-~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 117 LGSGTDPVEGAALAIAILEEL-LERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 99999999999996 467777 45589999999983 678999999999999998774
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-24 Score=186.26 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=68.2
Q ss_pred CCCCChHHHHHHHHHHHH----HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEeCCCcHHHHhhcC--
Q psy2520 127 KVVLSGGERKRLSFATEL----LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK-KTVLCTIHQPSSELIDMFD-- 199 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL----~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g-~tii~~tH~~~~~~~~~~d-- 199 (290)
+..||+|||||+.++++| +.+|+++|+||||++||+.++..+++.|++++++.| .|+|++||++. +...++|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCce
Confidence 556999999999887655 479999999999999999999999999999854424 58999999974 5667776
Q ss_pred eEEEEeCCe
Q psy2520 200 KIILLADSR 208 (290)
Q Consensus 200 ~v~~l~~G~ 208 (290)
++++|.+|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG2355|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=178.69 Aligned_cols=189 Identities=21% Similarity=0.236 Sum_probs=144.3
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---------------cccccEEEEccCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---------------KFRSACGFMYQHD 69 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---------------~~~~~ig~v~Q~~ 69 (290)
++|++++.|....++|.||||||||||+|+|-.--. -|.|.++|++.-. .|++.+++-- +-
T Consensus 32 Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-ev 107 (291)
T KOG2355|consen 32 DFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EV 107 (291)
T ss_pred EEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCccccccccccCceeEecccccccccccc-cc
Confidence 689999999999999999999999999999975442 4899999987522 2444444433 22
Q ss_pred CCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC
Q psy2520 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 149 (290)
Q Consensus 70 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ 149 (290)
.+..++++.+. .|+..--. .++. +++++.+.+.-.+. ...+|-|||+||.|++.|++.-+
T Consensus 108 plq~D~sae~m-ifgV~g~d------p~Rr---e~LI~iLDIdl~WR----------mHkvSDGqrRRVQicMGLL~Pfk 167 (291)
T KOG2355|consen 108 PLQGDISAEHM-IFGVGGDD------PERR---EKLIDILDIDLRWR----------MHKVSDGQRRRVQICMGLLKPFK 167 (291)
T ss_pred cccccccHHHH-HhhccCCC------hhHh---hhhhhheeccceEE----------EeeccccchhhhHHHHhccccee
Confidence 33445666554 34432111 1222 45666666642221 12389999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
+|||||-|-.||..++..+++.|++-+.++|.||++.||-.. -+..+..+++.|++|+++..-+...+
T Consensus 168 VLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 168 VLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred EEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhEEEecCCeeeeccccchh
Confidence 999999999999999999999999998889999999999874 68899999999999999875554443
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-24 Score=202.83 Aligned_cols=183 Identities=27% Similarity=0.331 Sum_probs=127.5
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccC-CCCCCCCCHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH-DLFSPSLTVYEHLYF 83 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~-~~~~~~lTv~e~l~~ 83 (290)
+-++++..|..++|+|+||+|||||||+|+. |+|. +-++.+..+. -+++-. ..+..+..+.+.+.-
T Consensus 98 ~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~--~f~veqE~~g--~~t~~~~~~l~~D~~~~dfl~~ 164 (582)
T KOG0062|consen 98 KANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVS--GFHVEQEVRG--DDTEALQSVLESDTERLDFLAE 164 (582)
T ss_pred CCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcC--ccCchhheec--cchHHHhhhhhccHHHHHHHHh
Confidence 3467888999999999999999999999996 2222 2222222111 122211 122223333332221
Q ss_pred HHHhcCchhhhHH-HHHHHHHHHHHHcCCCCcc-CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 84 MALLKLDRRVKAY-QRIALINSLLIELGLMNSQ-HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
-..+ ... ...+...++|..+|....+ .++ .++||||=|.|++|||||..+|++|||||||+.||
T Consensus 165 e~~l------~~~~~l~ei~~~~L~glGFt~emq~~p--------t~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLD 230 (582)
T KOG0062|consen 165 EKEL------LAGLTLEEIYDKILAGLGFTPEMQLQP--------TKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD 230 (582)
T ss_pred hhhh------hccchHHHHHHHHHHhCCCCHHHHhcc--------ccccCcchhhHHHHHHHHhcCCCEEeecCCcccch
Confidence 1111 111 2223334488899997544 444 45699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 219 (290)
..+...+.+.|..+ ..|+|+|||| +.++-..|..|+.+++-++- |.|+.++..
T Consensus 231 v~av~WLe~yL~t~----~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 231 VVAVAWLENYLQTW----KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred hHHHHHHHHHHhhC----CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 99999999999876 3699999999 56888899999999887764 568776544
|
|
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-23 Score=195.93 Aligned_cols=184 Identities=22% Similarity=0.227 Sum_probs=138.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||.+..|+-+.|.||||||||+|||+++|+-+. .+|.+.--... -.+.+-|+||.|.+.- -|.+|.+.|
T Consensus 452 e~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~---~~G~l~k~~~~----~~~~lfflPQrPYmt~-GTLRdQvIY 523 (659)
T KOG0060|consen 452 ENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS---TGGKLTKPTDG----GPKDLFFLPQRPYMTL-GTLRDQVIY 523 (659)
T ss_pred eeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc---CCCeEEecccC----CCCceEEecCCCCccc-cchhheeec
Confidence 479999999999999999999999999999999875 37988753322 1256999999987544 499999988
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCc------ccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHT------RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
....-.. ..+....+++...|+.++|.|...+ .+--+| ...||+||+||+++||.+.++|++-||||-|
T Consensus 524 P~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW---~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~T 598 (659)
T KOG0060|consen 524 PLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDW---MDVLSPGEQQRLAFARLFYHKPKFAILDECT 598 (659)
T ss_pred cCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccH---HhhcCHHHHHHHHHHHHHhcCCceEEeechh
Confidence 6321110 0111122345556666666544322 221112 2459999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
+++|......+.+.+++. |.|.|-|+|.. .+.++-|.++-|+.
T Consensus 599 SAv~~dvE~~~Yr~~r~~----giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 599 SAVTEDVEGALYRKCREM----GITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred hhccHHHHHHHHHHHHHc----CCeEEEeccHH--HHHhhhhEEEEecC
Confidence 999999999998887665 89999999985 47888899999975
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-23 Score=196.00 Aligned_cols=171 Identities=29% Similarity=0.353 Sum_probs=124.8
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEE-----------EECCEecCcccc----cc--EEEEccC----
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI-----------RVNGKPVEGKFR----SA--CGFMYQH---- 68 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I-----------~i~G~~~~~~~~----~~--ig~v~Q~---- 68 (290)
.++|++++|+||||-||||-+++|+|.+.|+. |+- .+-|..+...++ .. +..=+|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 47899999999999999999999999999963 432 111111111010 11 1122221
Q ss_pred CCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 69 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
|..+. -||.|-|.-. ...-..+++++.++|.+..++. +.+|||||.||++||.++++++
T Consensus 174 Pk~~K-G~v~elLk~~------------de~g~~devve~l~L~nvl~r~--------v~~LSGGELQr~aIaa~l~rdA 232 (591)
T COG1245 174 PKVVK-GKVGELLKKV------------DERGKFDEVVERLGLENVLDRD--------VSELSGGELQRVAIAAALLRDA 232 (591)
T ss_pred HHHhc-chHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhh--------hhhcCchHHHHHHHHHHHhccC
Confidence 11111 1444433211 1112457899999999999999 4559999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
+++++|||||-||...+....+.+++++ +.+++||+|.||+ ..+--++|.|.++..
T Consensus 233 DvY~FDEpsSyLDi~qRl~~ar~Irel~-~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 233 DVYFFDEPSSYLDIRQRLNAARVIRELA-EDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred CEEEEcCCcccccHHHHHHHHHHHHHHh-ccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 9999999999999999999999999995 4489999999997 345557899988863
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-23 Score=194.60 Aligned_cols=182 Identities=25% Similarity=0.305 Sum_probs=140.9
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFM 84 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~ 84 (290)
++++.++.-+..+++|+||+||||+++++.|-+.| ..|-+.+.+ |.+|+|-+|...-+-.+.|.+- .+.
T Consensus 382 ~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~---~rgi~~~~~-------r~ri~~f~Qhhvd~l~~~v~~v-d~~ 450 (582)
T KOG0062|consen 382 QLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP---TRGIVGRHP-------RLRIKYFAQHHVDFLDKNVNAV-DFM 450 (582)
T ss_pred ccCCccchhhhhheeccCchhHHHHHHHHhccCCc---ccceeeecc-------cceecchhHhhhhHHHHHhHHH-HHH
Confidence 45666677778899999999999999999998887 378777654 5679999997543333444332 222
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
...+... -.+.+..-+..+||+. .+... +.+||||||-||++|.+...+|.+|+|||||+.||..
T Consensus 451 ~~~~pG~------~~ee~r~hl~~~Gl~g~la~~s--------i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~d 516 (582)
T KOG0062|consen 451 EKSFPGK------TEEEIRRHLGSFGLSGELALQS--------IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRD 516 (582)
T ss_pred HHhCCCC------CHHHHHHHHHhcCCCchhhhcc--------ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHH
Confidence 2222211 1234567889999964 45555 4559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE-EcCHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF-IGSKD 216 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~-~g~~~ 216 (290)
+...+.+.|+.+ . | .||+||||. +++...|+.+|+.++|++.. .|...
T Consensus 517 sl~AL~~Al~~F-~--G-GVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ieg~~~ 565 (582)
T KOG0062|consen 517 SLGALAKALKNF-N--G-GVVLVSHDE-EFISSLCKELWVVEDGKVTPIEGGID 565 (582)
T ss_pred HHHHHHHHHHhc-C--C-cEEEEECcH-HHHhhcCceeEEEcCCcEEeeeccHH
Confidence 999999999987 2 3 699999995 68889999999999999874 45553
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=189.87 Aligned_cols=180 Identities=28% Similarity=0.355 Sum_probs=135.6
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccC--CCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH--DLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~--~~~~~~lTv~e~l~ 82 (290)
+++|-|.-...+||+||||.||||||++|.|-+.|. .|+..-| .|-+||+.-|+ ..+-..-|..|+|.
T Consensus 605 kldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKn-------hrL~iG~FdQh~~E~L~~Eetp~EyLq 674 (807)
T KOG0066|consen 605 KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKN-------HRLRIGWFDQHANEALNGEETPVEYLQ 674 (807)
T ss_pred cccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhcc-------ceeeeechhhhhHHhhccccCHHHHHH
Confidence 355666667789999999999999999999999995 6766533 24469998886 35556667777765
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
-...+ +. ..+.+.|..+||...+++. .+..|||||+-||++|-.-+..|+||||||||++||.
T Consensus 675 r~FNl--py--------q~ARK~LG~fGL~sHAHTi-------kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDI 737 (807)
T KOG0066|consen 675 RKFNL--PY--------QEARKQLGTFGLASHAHTI-------KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDI 737 (807)
T ss_pred HhcCC--Ch--------HHHHHHhhhhhhhhccceE-------eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcch
Confidence 43322 11 1235788999998888875 2567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKD 216 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~ 216 (290)
.+...+.+.|.++ . -.||+||||-. .+.+.--.++++.+-.|- ..|+.+
T Consensus 738 ESIDALaEAIney-~---GgVi~VsHDeR-Li~eT~C~LwVvE~Q~i~eIdGdFe 787 (807)
T KOG0066|consen 738 ESIDALAEAINEY-N---GGVIMVSHDER-LIVETDCNLWVVENQGIDEIDGDFE 787 (807)
T ss_pred hhHHHHHHHHHhc-c---CcEEEEecccc-eeeecCceEEEEccCChhhccccHH
Confidence 9999999999987 2 36999999953 444444466666553332 235444
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=167.33 Aligned_cols=74 Identities=22% Similarity=0.334 Sum_probs=67.4
Q ss_pred CChHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 130 LSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
||+|||||++||++++ .+|+++|+|||+++||+..+..+.+.|.+++ +.|.|+|++||++ +....+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~-~~g~tiIiiSH~~--~~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMA-KHTSQFIVITLKK--EMFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEECCH--HHHhhCCeEEEEE
Confidence 9999999999999997 6999999999999999999999999999984 4479999999996 3567899999997
Q ss_pred C
Q psy2520 206 D 206 (290)
Q Consensus 206 ~ 206 (290)
.
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=177.02 Aligned_cols=77 Identities=30% Similarity=0.453 Sum_probs=68.6
Q ss_pred CCCChHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 128 VVLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
..|||||+||+++|++++. +|+++|+||||++||+..+..+.+.|++++ + +.|+|++||++. +..+||++++
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~-~~tii~isH~~~--~~~~~d~~~~ 244 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-R-SHQVLCITHLPQ--VAAMADNHFL 244 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEechHH--HHHhcCcEEE
Confidence 3499999999999997664 999999999999999999999999999983 3 689999999973 5689999999
Q ss_pred EeCCe
Q psy2520 204 LADSR 208 (290)
Q Consensus 204 l~~G~ 208 (290)
|.+|.
T Consensus 245 l~~~~ 249 (276)
T cd03241 245 VEKEV 249 (276)
T ss_pred EEEec
Confidence 98763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0064|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-22 Score=191.95 Aligned_cols=182 Identities=22% Similarity=0.291 Sum_probs=127.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
+.+||++++|-.+.|+||||||||+|+++|.|+-|- ..|...+ | .+.++-|+||.|.+- .-|.+|.+.|
T Consensus 499 ~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---y~g~L~~---P----~~~~mFYIPQRPYms-~gtlRDQIIY 567 (728)
T KOG0064|consen 499 PKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---YNGLLSI---P----RPNNIFYIPQRPYMS-GGTLRDQIIY 567 (728)
T ss_pred cceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---cCCeeec---C----CCcceEeccCCCccC-cCcccceeec
Confidence 578999999999999999999999999999999765 2454443 1 234599999998765 4577777765
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCC-CCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ-KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~-~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
.-..-... .+....+....+|+.+.|.+...+..|=+.+.- ...||||||||+++||.+.++|+.-+|||.|++..+
T Consensus 568 PdS~e~~~--~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsi 645 (728)
T KOG0064|consen 568 PDSSEQMK--RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSI 645 (728)
T ss_pred CCcHHHHH--hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhccccc
Confidence 32110000 000011233455555555444433321000000 134999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
.....+.+..++. |.+.|-+||+|. ++++-..++-.
T Consensus 646 dvE~~i~~~ak~~----gi~llsithrps--lwk~h~~ll~~ 681 (728)
T KOG0064|consen 646 DVEGKIFQAAKDA----GISLLSITHRPS--LWKYHTHLLEF 681 (728)
T ss_pred chHHHHHHHHHhc----CceEEEeecCcc--HHHHHHHHHhc
Confidence 9999988887664 899999999984 67766555544
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-21 Score=163.08 Aligned_cols=74 Identities=31% Similarity=0.423 Sum_probs=67.3
Q ss_pred CChHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 130 LSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
||+||+||++||++|+. +|+++|+|||++|+|+..+..+.+.+.++..+ +.++|++||++ ++...+|+++.|.
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 89999999999999997 78999999999999999999999999998555 88999999996 4567899999986
Q ss_pred C
Q psy2520 206 D 206 (290)
Q Consensus 206 ~ 206 (290)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-22 Score=175.77 Aligned_cols=149 Identities=21% Similarity=0.238 Sum_probs=109.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEE-EEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACG-FMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig-~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|+++...++++++|.||||+||||||++++-. .+..++| |||.+...++ +
T Consensus 21 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~---~----- 72 (222)
T cd03285 21 NDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP---I----- 72 (222)
T ss_pred eeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe---c-----
Confidence 578999999999999999999999999998821 0111233 4444322111 0
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHH--HhCCCeEEEeCC---C
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL--LTDPALLLCDEP---T 157 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL--~~~p~llllDEP---t 157 (290)
+++++..+++.+... ..+|.|+++++.+++++ +.+|+++||||| |
T Consensus 73 -------------------~~~il~~~~l~d~~~-----------~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT 122 (222)
T cd03285 73 -------------------VDCILARVGASDSQL-----------KGVSTFMAEMLETAAILKSATENSLIIIDELGRGT 122 (222)
T ss_pred -------------------cceeEeeeccccchh-----------cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCC
Confidence 123344455543332 23999999999999999 899999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
+++|+.+... .+++.+.++.|.++|++||+ .++.++||++..+.+|++...++
T Consensus 123 ~~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 123 STYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred ChHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9999988854 33455533347899999996 47889999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=200.98 Aligned_cols=126 Identities=26% Similarity=0.284 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC---CCe
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTD---PAL 150 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~---p~l 150 (290)
|||.|.+.|+... .+.....+.|..+||... +.+. ...|||||.||+-||..|..+ +.+
T Consensus 1661 mtv~ea~~~F~~~---------~~i~~~L~~L~~vGLgYl~LGq~--------~~tLSGGE~qRikLa~~l~~~~~~~~l 1723 (1809)
T PRK00635 1661 TPIEEVAETFPFL---------KKIQKPLQALIDNGLGYLPLGQN--------LSSLSLSEKIAIKIAKFLYLPPKHPTL 1723 (1809)
T ss_pred CCHHHHHHHhhcc---------HHHHHHHHHHHHcCCCeeeCCCc--------CCccCchHHHHHHHHHHHhcCCCCCcE
Confidence 5666666664211 123344678999999754 3444 456999999999999999865 789
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAALA 220 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 220 (290)
++|||||+||++....++++.|.++ .+.|.|||++.|++ ++.+.||.|+-| ..|+|++.|+|+++..
T Consensus 1724 yilDEPt~GLh~~d~~~Ll~~l~~L-~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1724 FLLDEIATSLDNQQKSALLVQLRTL-VSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHH-HhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 9999999999999999999999999 56799999999996 467779999998 4579999999998753
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=170.36 Aligned_cols=142 Identities=16% Similarity=0.112 Sum_probs=101.1
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 86 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~ 86 (290)
++++.+|++++|+||||||||||||+|+|...- ...|.++.. -.+++|.+.+++.+|+.|++.++..
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l--------~~~G~~v~a-----~~~~~q~~~l~~~~~~~d~l~~~~s 85 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGVNVIL--------AQAGAPVCA-----SSFELPPVKIFTSIRVSDDLRDGIS 85 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHHHHHH--------HHcCCEEec-----CccCcccceEEEeccchhccccccC
Confidence 456777899999999999999999999985421 124444322 1367777788999999999987542
Q ss_pred hcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHH
Q psy2520 87 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSAS 166 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 166 (290)
.. . ....++.++++.+++ .+|+++|+||||+|+|+..+.
T Consensus 86 ~~------~-~e~~~~~~iL~~~~~----------------------------------~~p~llllDEp~~glD~~~~~ 124 (199)
T cd03283 86 YF------Y-AELRRLKEIVEKAKK----------------------------------GEPVLFLLDEIFKGTNSRERQ 124 (199)
T ss_pred hH------H-HHHHHHHHHHHhccC----------------------------------CCCeEEEEecccCCCCHHHHH
Confidence 11 1 112345666665431 589999999999999999998
Q ss_pred HHH-HHHHHHHhcCCcEEEEEeCCCcHHHHhh--cCeEEEE
Q psy2520 167 KLI-RMMRELTSQRKKTVLCTIHQPSSELIDM--FDKIILL 204 (290)
Q Consensus 167 ~i~-~~l~~l~~~~g~tii~~tH~~~~~~~~~--~d~v~~l 204 (290)
.+. .+++.+. +.|.|+|++||++ +.+... .+++-.+
T Consensus 125 ~l~~~ll~~l~-~~~~tiiivTH~~-~~~~~~~~~~~v~~~ 163 (199)
T cd03283 125 AASAAVLKFLK-NKNTIGIISTHDL-ELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHH-HCCCEEEEEcCcH-HHHHhhhcCCCeEEE
Confidence 775 4788884 4589999999997 344443 3444443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-21 Score=177.48 Aligned_cols=180 Identities=25% Similarity=0.325 Sum_probs=136.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-----CCCccEEEECCEecCccccccEEEEccC-CCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD-----CIIDGDIRVNGKPVEGKFRSACGFMYQH-DLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~-----~~~~G~I~i~G~~~~~~~~~~ig~v~Q~-~~~~~~lTv 77 (290)
.|+|++++||++++|+|+|||||||||++|+|..... ..++|.|.+--.. ..+++|-+ ..-|..-|+
T Consensus 400 r~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~f~~~ti 472 (593)
T COG2401 400 RNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEYEPEFGEVTI 472 (593)
T ss_pred eceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCcccccccCchhH
Confidence 4899999999999999999999999999999865321 1146766552211 23445543 223445566
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc--cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS--QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
.|.+.-- . . +...+.++|...|+.+- ..++ .++||-|||.|+.||.+++..|.+++.||
T Consensus 473 lehl~s~----t-G------D~~~AveILnraGlsDAvlyRr~--------f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 473 LEHLRSK----T-G------DLNAAVEILNRAGLSDAVLYRRK--------FSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred HHHHhhc----c-C------chhHHHHHHHhhccchhhhhhcc--------HhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 6665321 0 1 11234678999999653 3444 45699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhh-cCeEEEEeCCeEE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSRTA 210 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~-~d~v~~l~~G~i~ 210 (290)
=.|.||+.++..+..-|.+++++.|.|++++||++ +..-.+ -|+++++.-|+..
T Consensus 534 F~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 99999999999999999999888899999999997 455556 5899888777653
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-20 Score=182.62 Aligned_cols=126 Identities=31% Similarity=0.420 Sum_probs=102.8
Q ss_pred CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCcc-CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC---Ce
Q psy2520 75 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-HTRIGSSSITQKVVLSGGERKRLSFATELLTDP---AL 150 (290)
Q Consensus 75 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p---~l 150 (290)
|||.|...|+.... ...+..+.|..+||.-.. -+. ...|||||.|||-||..|.... -+
T Consensus 784 MTveEA~~FF~~~p---------~I~rkLqtL~dVGLgYi~LGQp--------atTLSGGEaQRvKLA~EL~k~~tg~Tl 846 (935)
T COG0178 784 MTVEEALEFFEAIP---------KIARKLQTLVDVGLGYIKLGQP--------ATTLSGGEAQRVKLAKELSKRSTGKTL 846 (935)
T ss_pred ccHHHHHHHHhcch---------HHHHHHHHHHHcCcceEecCCc--------cccccchHHHHHHHHHHHhhccCCCeE
Confidence 67777777654321 123345678889986432 333 5569999999999999998877 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHHHH
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAALA 220 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 220 (290)
+||||||+||-.....++++.|.++ .+.|-|||++.|++ ++.+.||.|+-| ..|+|++.|+|+++.+
T Consensus 847 YiLDEPTTGLH~~Di~kLl~VL~rL-vd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 847 YILDEPTTGLHFDDIKKLLEVLHRL-VDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999 56799999999996 588999999998 4689999999998764
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-20 Score=191.67 Aligned_cols=136 Identities=24% Similarity=0.364 Sum_probs=109.1
Q ss_pred CCCCCHHHHHHHHHHhcCchh---h---hHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHH
Q psy2520 72 SPSLTVYEHLYFMALLKLDRR---V---KAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATEL 144 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~---~---~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL 144 (290)
+..+||.|.+.|.-.+..... . -..+...++ ++|+.+||.+. .++. +.+|||||+|||.||++|
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl-~~L~~vGL~~l~l~r~--------~~~LSgGE~QRv~LA~aL 504 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERL-KFLVDVGLDYLTLSRS--------AGTLSGGEAQRIRLATQI 504 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHhhccccCCCCCCCc--------hhhCCHHHHHHHHHHHHH
Confidence 456899999998544322211 0 011222333 47888999876 6888 455999999999999999
Q ss_pred HhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHH
Q psy2520 145 LTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKD 216 (290)
Q Consensus 145 ~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~ 216 (290)
+.+| ++|||||||+|||+..+..++++|+++ ++.|.|||+|+|++. ++ ..||+|++| .+|++++.|+++
T Consensus 505 ~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L-~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~ 581 (943)
T PRK00349 505 GSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHL-RDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPE 581 (943)
T ss_pred hhCCCCcEEEecCCccCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHH
Confidence 9997 999999999999999999999999999 456999999999974 55 579999999 999999999998
Q ss_pred HHH
Q psy2520 217 AAL 219 (290)
Q Consensus 217 ~~~ 219 (290)
++.
T Consensus 582 e~~ 584 (943)
T PRK00349 582 EIM 584 (943)
T ss_pred HHh
Confidence 864
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-21 Score=165.62 Aligned_cols=153 Identities=16% Similarity=0.109 Sum_probs=104.0
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
.++++.+|++++|+|||||||||||++|++..-.. ..|.... . .+..+++..|. +..++..++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~--~~g~~~~-~------~~~~i~~~dqi---~~~~~~~d~----- 84 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA--QIGCFVP-A------ESASIPLVDRI---FTRIGAEDS----- 84 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH--HcCCCcc-c------cccccCCcCEE---EEEecCccc-----
Confidence 46788899999999999999999999999543210 1232110 0 11224433221 111111111
Q ss_pred HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHH
Q psy2520 86 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 165 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 165 (290)
.... .+.+|.+++| ++.+.+++.+|+++|+||||+|+|+...
T Consensus 85 -----------------------------i~~~--------~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~ 126 (202)
T cd03243 85 -----------------------------ISDG--------RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEG 126 (202)
T ss_pred -----------------------------ccCC--------ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHH
Confidence 1111 2337766665 6666788899999999999999999988
Q ss_pred HHHHH-HHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 166 SKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 166 ~~i~~-~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
..+.. +++.+ .+.+.++|++||+. ++...++++..+..|++...++..
T Consensus 127 ~~l~~~ll~~l-~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~ 175 (202)
T cd03243 127 LAIAYAVLEHL-LEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTG 175 (202)
T ss_pred HHHHHHHHHHH-HhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCC
Confidence 88765 56666 45589999999985 567889999999999988887654
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-20 Score=189.44 Aligned_cols=136 Identities=26% Similarity=0.355 Sum_probs=106.8
Q ss_pred CCCCHHHHHHHHHHhcCchhhhH--H---HHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKA--Y---QRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~--~---~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
-.|||.|.+.|...+........ . .......+.+..+||... .++. +.+|||||+|||.||++|+.
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl~~L~~vgL~~l~l~r~--------~~tLSGGE~QRv~LA~aL~~ 504 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERLGFLIDVGLDYLTLSRA--------AGTLSGGEAQRIRLATQIGS 504 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHhhccccccccCCC--------cCcCCHHHHHHHHHHHHHhh
Confidence 35789888888765432211000 0 011122345778888765 6777 45699999999999999999
Q ss_pred CC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHH
Q psy2520 147 DP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAA 218 (290)
Q Consensus 147 ~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 218 (290)
+| .+|||||||+|||+..+..++++|++++ +.|.|||+|+|++ +.+ ..||++++| ++|++++.|+++++
T Consensus 505 ~~~~~llILDEPtagLD~~~~~~L~~~L~~L~-~~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 505 GLTGVLYVLDEPSIGLHQRDNERLINTLKRLR-DLGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred CCCCcEEEEcCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHH
Confidence 86 8999999999999999999999999994 5699999999997 455 599999999 89999999999876
Q ss_pred H
Q psy2520 219 L 219 (290)
Q Consensus 219 ~ 219 (290)
.
T Consensus 582 ~ 582 (924)
T TIGR00630 582 L 582 (924)
T ss_pred h
Confidence 4
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-19 Score=159.64 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=63.1
Q ss_pred CCCChHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 128 VVLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
..+|+||||+++||++|+ .+|+++|+||||++||+..+..+++.|+++ + .+++++|+. ..+..+|
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~-~~~~~~~ 255 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDL-ADFDALW 255 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCc-hhccchh
Confidence 448999999999999986 799999999999999999999999999875 2 345555553 3566777
Q ss_pred ---CeEEEEeCCeE
Q psy2520 199 ---DKIILLADSRT 209 (290)
Q Consensus 199 ---d~v~~l~~G~i 209 (290)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-19 Score=153.15 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=93.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEE-EEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACG-FMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig-~v~Q~~~~~~~lTv~e~l~ 82 (290)
.|+++.+++|++++|+||||+|||||+++++++.-- .++| || +..++.+++.|++.
T Consensus 20 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l--------------------a~~G~~v---pa~~~~l~~~d~I~ 76 (204)
T cd03282 20 NDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM--------------------AQIGCFV---PAEYATLPIFNRLL 76 (204)
T ss_pred eeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH--------------------HHcCCCc---chhhcCccChhhee
Confidence 478999999999999999999999999999986421 1122 22 33445566777664
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
... +..+...+. .+.+|+|++|+ +.+.+++.+|+++|||||++|+|+
T Consensus 77 ~~~------------------------~~~d~~~~~--------~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 77 SRL------------------------SNDDSMERN--------LSTFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred Eec------------------------CCccccchh--------hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 321 111112222 34499999975 566668899999999999999999
Q ss_pred HHHHHH-HHHHHHHHhcCCcEEEEEeCCC
Q psy2520 163 FSASKL-IRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 163 ~~~~~i-~~~l~~l~~~~g~tii~~tH~~ 190 (290)
.....+ ..+++.+ .+.|.++|++||+.
T Consensus 124 ~~~~~l~~~il~~l-~~~~~~~i~~TH~~ 151 (204)
T cd03282 124 ADGFAISLAILECL-IKKESTVFFATHFR 151 (204)
T ss_pred HHHHHHHHHHHHHH-HhcCCEEEEECChH
Confidence 776655 4567777 44589999999985
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-19 Score=170.01 Aligned_cols=193 Identities=26% Similarity=0.329 Sum_probs=137.6
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcC---CCCCCCCccEEEECCEecCc-----------cccccEEEEccC--
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQR---LPDDCIIDGDIRVNGKPVEG-----------KFRSACGFMYQH-- 68 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~---~~~~~~~~G~I~i~G~~~~~-----------~~~~~ig~v~Q~-- 68 (290)
|.|++|-.|..++++||||-||||||+.|+.+ ++|+ =.|++..+.+.. .-.++..++-.+
T Consensus 282 nA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn----IDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~ 357 (807)
T KOG0066|consen 282 NASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN----IDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAK 357 (807)
T ss_pred ccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC----CceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHH
Confidence 67899999999999999999999999999865 3453 355555554421 001112222111
Q ss_pred ---CCCCCCCCHHHHHHHHH-HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHH
Q psy2520 69 ---DLFSPSLTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 144 (290)
Q Consensus 69 ---~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL 144 (290)
..--...|+.|-+.-.+ .++... ......++..+|.-+|++..+..++ ...+|||-|.||++||||
T Consensus 358 L~~q~e~Gd~taaErl~~v~~ELraiG---A~sAEarARRILAGLGFskEMQ~rP-------t~kFSGGWRMRvSLARAL 427 (807)
T KOG0066|consen 358 LMSQIEEGDTTAAERLKEVADELRAIG---ADSAEARARRILAGLGFSKEMQERP-------TTKFSGGWRMRVSLARAL 427 (807)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHhc---cccchhHHHHHHhhcCCChhHhcCC-------ccccCCceeeehhHHHHH
Confidence 11123456666554322 222111 1222345567888899876544332 345999999999999999
Q ss_pred HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEE-cCHH
Q psy2520 145 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI-GSKD 216 (290)
Q Consensus 145 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~-g~~~ 216 (290)
...|-+|.|||||+.||......+-+.|..+ + +|+++|+||. .++-..|..|+.|++-++.|+ |+..
T Consensus 428 flEPTLLMLDEPTNHLDLNAVIWLdNYLQgW-k---KTLLIVSHDQ-gFLD~VCtdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 428 FLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW-K---KTLLIVSHDQ-GFLDSVCTDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred hcCceeeeecCCccccccceeeehhhHHhhh-h---heeEEEeccc-chHHHHHHHHhhhhhhhhhhhcchHH
Confidence 9999999999999999999999999999988 3 5999999996 589999999999999888654 6543
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-18 Score=149.94 Aligned_cols=153 Identities=19% Similarity=0.119 Sum_probs=101.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++++...+ ++++|+|||||||||||+++++..-. |+ .|..+.. .+..++++.| +++.+++.+++..
T Consensus 22 n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~-~~~~i~~~~~---i~~~~~~~~~ls~ 88 (216)
T cd03284 22 NDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPA-SKAEIGVVDR---IFTRIGASDDLAG 88 (216)
T ss_pred eeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeecc-ccceecceee---EeccCCchhhhcc
Confidence 356777766 89999999999999999999875432 21 1222211 1345777754 4666777776654
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHH--HHhCCCeEEEeCC---CC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE--LLTDPALLLCDEP---TT 158 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~a--L~~~p~llllDEP---ts 158 (290)
+. |.=...++.++++ .+.+|+++||||| |+
T Consensus 89 g~---------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 89 GR---------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred Cc---------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 31 1111112233333 3569999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
++|.... ...++..+.+..+.++|++||+. ++.+++|++..+.+|++...+..+++
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 8888653 23344445332378999999984 67889999888888988877766544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.1e-18 Score=152.01 Aligned_cols=139 Identities=20% Similarity=0.270 Sum_probs=97.2
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
.-++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ++...+++++|.+ +.+.++|.++..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k----- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK----- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH-----
Confidence 568999999999999999999999985 7999999999742 2445567788754 3344555444110
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 168 (290)
..| ..+.+++++|+++|+|||++ ...+
T Consensus 183 ------------------------------------------~~~-----~~~~i~~~~P~villDE~~~------~e~~ 209 (270)
T TIGR02858 183 ------------------------------------------AEG-----MMMLIRSMSPDVIVVDEIGR------EEDV 209 (270)
T ss_pred ------------------------------------------HHH-----HHHHHHhCCCCEEEEeCCCc------HHHH
Confidence 001 12233346999999999974 3445
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCcHH-H-----------HhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 169 IRMMRELTSQRKKTVLCTIHQPSSE-L-----------IDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 169 ~~~l~~l~~~~g~tii~~tH~~~~~-~-----------~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
..+++.+ . .|.++|+++|+.... + ..+|||+++|++|+ ..|+++++
T Consensus 210 ~~l~~~~-~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 210 EALLEAL-H-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHHHHH-h-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 5666665 3 489999999975321 2 25689999999876 55665543
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-17 Score=155.35 Aligned_cols=172 Identities=25% Similarity=0.302 Sum_probs=130.6
Q ss_pred eEEEEeCC-----eEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHH
Q psy2520 6 LTGAALSG-----TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 6 is~~~~~G-----e~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
..+.|+.| |++..+|.||.|||||+++++|.++|+. .|+|-. -.|+|=||.-.--..-||++.
T Consensus 355 F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p~----------lnVSykpqkispK~~~tvR~l 422 (592)
T KOG0063|consen 355 FCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIPV----------LNVSYKPQKISPKREGTVRQL 422 (592)
T ss_pred EEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCcccc----------cceeccccccCccccchHHHH
Confidence 44555554 6889999999999999999999999962 344432 247888886433344578876
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.--.+ +.......+.++++-+.+++..|.. +.+|||||+|||++|.+|=..+++++.|||.+-|
T Consensus 423 l~~kIr-------~ay~~pqF~~dvmkpL~ie~i~dqe--------vq~lSggelQRval~KOGGKpAdvYliDEpsAyl 487 (592)
T KOG0063|consen 423 LHTKIR-------DAYMHPQFVNDVMKPLQIENIIDQE--------VQGLSGGELQRVALALCLGKPADVYLIDEPSAYL 487 (592)
T ss_pred HHHHhH-------hhhcCHHHHHhhhhhhhHHHHHhHH--------hhcCCchhhHHHHHHHhcCCCCceEEecCchhhc
Confidence 543221 1112234467788888888888888 4459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
|+..+..--..++++--...+|-.+|.||.. ..--++||+++..
T Consensus 488 DSeQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 488 DSEQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred ChHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEEe
Confidence 9999998888888864445789999999964 2334789998875
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-17 Score=139.46 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=56.7
Q ss_pred CCCChHHHHHHHHHHHHH--hCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 128 VVLSGGERKRLSFATELL--TDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~--~~p~llllDEPtsgLD~~~~~~i~-~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
+.+|+|++| +++++. .+|+++|+|||++|+|+.....+. .+++.+.++.+.++|++||++ ++.+++|+.--+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v 134 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGV 134 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccc
Confidence 448888776 444444 499999999999999999877764 566777432488999999985 577888754444
Q ss_pred eCCeEE
Q psy2520 205 ADSRTA 210 (290)
Q Consensus 205 ~~G~i~ 210 (290)
.+++..
T Consensus 135 ~~~~~~ 140 (185)
T smart00534 135 RNLHMS 140 (185)
T ss_pred eEEEEE
Confidence 444443
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.5e-15 Score=137.84 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=65.7
Q ss_pred CCCChHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 128 VVLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
..+|.||+|+++||+.|+ .+|+|+|||||+++||+..+..+++.+.++ +..+++++|+.. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~-~~~~~~ 346 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLE-DLADLL 346 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChh-hhhhhh
Confidence 569999999999999996 699999999999999999999999998764 347899999863 455553
Q ss_pred --CeEEEEeCCeE
Q psy2520 199 --DKIILLADSRT 209 (290)
Q Consensus 199 --d~v~~l~~G~i 209 (290)
++++.|.+|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 57999999986
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=132.46 Aligned_cols=124 Identities=23% Similarity=0.227 Sum_probs=85.0
Q ss_pred EEEEeCC--eEEEEECCCCChHHHHHHHHH--cCCCCCCCCccEEEECCEecCccccccEEEEccCCC-CCCCCCHHHHH
Q psy2520 7 TGAALSG--TLVAIMGASGAGKSTLLAALS--QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL-FSPSLTVYEHL 81 (290)
Q Consensus 7 s~~~~~G--e~~~IiGpnGaGKSTLl~~l~--G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~-~~~~lTv~e~l 81 (290)
++.+.++ .+++|+||||+||||||+.++ +.+.. .|...... .-.++|..|... +-...++.++
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~----~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~~- 88 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAH----IGSFVPAD-------SATIGLVDKIFTRMSSRESVSSG- 88 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHh----CCCeeEcC-------CcEEeeeeeeeeeeCCccChhhc-
Confidence 4455555 789999999999999999998 33332 46554321 224677766421 1111122111
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCC--hHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS--GGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LS--gGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
+| .-+-||+++|++++.+|+++|+|||++|
T Consensus 89 ------------------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~g 120 (213)
T cd03281 89 ------------------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKG 120 (213)
T ss_pred ------------------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCC
Confidence 12 2456899999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhc--CCcEEEEEeCCC
Q psy2520 160 LDSFSASKL-IRMMRELTSQ--RKKTVLCTIHQP 190 (290)
Q Consensus 160 LD~~~~~~i-~~~l~~l~~~--~g~tii~~tH~~ 190 (290)
+|+.....+ ..+++.+.+. .+.++|++||++
T Consensus 121 td~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 121 TDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 999765444 5688888443 135899999996
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-16 Score=139.91 Aligned_cols=72 Identities=32% Similarity=0.527 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 130 LSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
||||||.+++||.-|+ ..++++|||||.++||...+..+.++|+++ .+ +.-+|++||+. ..+..+|+.+.+.
T Consensus 137 lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~-~~-~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 137 LSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKEL-SK-QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp S-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHH-TT-TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-cc-ccccccccccc--ccccccccccccc
Confidence 9999999999998775 577899999999999999999999999998 43 47899999984 5788999887654
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.5e-16 Score=157.35 Aligned_cols=128 Identities=24% Similarity=0.226 Sum_probs=88.5
Q ss_pred eEEEEeCC-eEEEEECCCCChHHHHHHHHHcC-CCCCCCCccE-EEECCEecCccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 6 LTGAALSG-TLVAIMGASGAGKSTLLAALSQR-LPDDCIIDGD-IRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 6 is~~~~~G-e~~~IiGpnGaGKSTLl~~l~G~-~~~~~~~~G~-I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
+++.+.++ ++++|+||||+||||||++++|. +.+. .|. |... ....++|+.|...
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq---~G~~Vpa~-------~~~~~~~~d~i~~------------ 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQ---SGIPIPAN-------EHSEIPYFEEIFA------------ 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHH---hCCCccCC-------ccccccchhheee------------
Confidence 57888877 99999999999999999999987 2331 231 1100 0011222222100
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
.+. . . +.+. .. .+.+|+|+++++.|++.+ .+|+++|+|||++|+||
T Consensus 372 ---~i~--~----~------~si~----------~~--------LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~ 417 (771)
T TIGR01069 372 ---DIG--D----E------QSIE----------QN--------LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDP 417 (771)
T ss_pred ---ecC--h----H------hHHh----------hh--------hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCH
Confidence 000 0 0 0011 11 344999999999998876 89999999999999999
Q ss_pred HHHHHH-HHHHHHHHhcCCcEEEEEeCCC
Q psy2520 163 FSASKL-IRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 163 ~~~~~i-~~~l~~l~~~~g~tii~~tH~~ 190 (290)
.....+ ..++..+ .+.|.++|++||+.
T Consensus 418 ~eg~ala~aiLe~l-~~~g~~viitTH~~ 445 (771)
T TIGR01069 418 DEGSALAISILEYL-LKQNAQVLITTHYK 445 (771)
T ss_pred HHHHHHHHHHHHHH-HhcCCEEEEECChH
Confidence 999998 5778887 45689999999985
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-15 Score=138.91 Aligned_cols=176 Identities=20% Similarity=0.229 Sum_probs=118.3
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEE--------cc---CCCCCCCCCHHH
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFM--------YQ---HDLFSPSLTVYE 79 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v--------~Q---~~~~~~~lTv~e 79 (290)
.||++.+++|.||-||||-|++++|..+|+. |.- +....|...++|. |+ ++.+-.. .=.+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl---g~~-----~~pp~w~~il~~frgselq~yftk~le~~lk~~-~kpQ 168 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRY-----DNPPDWQEILTYFRGSELQNYFTKILEDNLKAI-IKPQ 168 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC---CCC-----CCCcchHHHhhhhhhHHHhhhhhhhccccccCc-CChH
Confidence 5799999999999999999999999999852 321 1111111112211 01 0000000 0011
Q ss_pred HHHHHHH-hcC--chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 80 HLYFMAL-LKL--DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 80 ~l~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
++....+ .+. ..............++++.+.|.+..++. +..|||||-||.+||.+.+++.++.++|||
T Consensus 169 yvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re--------~~~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 169 YVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDRE--------VEQLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhh--------hhhcccchhhhhhhhhhhhhhcceeEecCC
Confidence 1111110 000 00111111122346778888888888888 445999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
.+.||...+..-...++.+ -..+.=||+|.||++ .+.-+.|-+..+.
T Consensus 241 SsYLDVKQRLkaA~~IRsl-~~p~~YiIVVEHDLs-VLDylSDFiCcLY 287 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSL-INPDRYIIVVEHDLS-VLDYLSDFICCLY 287 (592)
T ss_pred cccchHHHhhhHHHHHHHh-hCCCCeEEEEEeech-HHHhhhcceeEEe
Confidence 9999999999999999999 456788999999973 4555678888876
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.2e-15 Score=128.46 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=43.6
Q ss_pred CChH--HHHHHHHHHHHHhCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHH
Q psy2520 130 LSGG--ERKRLSFATELLTDPALLLCDEPT-----TGLDSFSASKLIRMMRELT 176 (290)
Q Consensus 130 LSgG--qrqRv~ia~aL~~~p~llllDEPt-----sgLD~~~~~~i~~~l~~l~ 176 (290)
.||+ |++++.||++++.+|+++++|||| ++||+..+..+.+.+++++
T Consensus 151 ~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 151 KSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 4444 999999999999999999999999 9999999999999999984
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-14 Score=139.92 Aligned_cols=77 Identities=25% Similarity=0.425 Sum_probs=69.4
Q ss_pred CCCChHHHHHHHHHHHHHhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 128 VVLSGGERKRLSFATELLTD----PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~~~----p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
..|||||+||++||++++.. |++|||||||+|||+.++..+.+.|++++ + +.+||++||++ .+..+||++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~-~~~vi~iTH~~--~~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-E-RHQVLCVTHLP--QVAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEEChH--HHHHhcCeEEE
Confidence 46899999999999999985 69999999999999999999999999994 4 79999999997 34579999999
Q ss_pred EeCCe
Q psy2520 204 LADSR 208 (290)
Q Consensus 204 l~~G~ 208 (290)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=120.11 Aligned_cols=135 Identities=17% Similarity=0.173 Sum_probs=84.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHc-CCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G-~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.++++.+.+|++++|+||||+||||||+++++ .+.+ ..|..... ... .++|..| ++..+...|++.
T Consensus 22 n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la---~~G~~v~a-~~~------~~~~~~~---i~~~~~~~d~~~ 88 (222)
T cd03287 22 NDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA---QIGSFVPA-SSA------TLSIFDS---VLTRMGASDSIQ 88 (222)
T ss_pred EeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH---hCCCEEEc-Cce------EEeccce---EEEEecCccccc
Confidence 47899999999999999999999999999999 3344 25665432 211 2333222 111111111111
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCC--hHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS--GGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LS--gGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
-+ +| ..|-++++-+..-+.+|+++|+|||.+|.
T Consensus 89 ~~---------------------------------------------~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 89 HG---------------------------------------------MSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred cc---------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 00 11 11223333333335689999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 161 DSFSASKL-IRMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 161 D~~~~~~i-~~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
|+.....+ ..+++.+.+..+.++|++||++ ++..+.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 87776664 5677777443488999999996 344544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-14 Score=111.21 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=57.7
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHH
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
-++++|.+++|++++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ .++ .|++
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~-lf~--~ti~ 72 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL-GLE--IRLR 72 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh-cch--hhHH
Confidence 47899999999999999999999999999986 3899999998853 345667788776 333 4899
Q ss_pred HHHHH
Q psy2520 79 EHLYF 83 (290)
Q Consensus 79 e~l~~ 83 (290)
|||.+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 99987
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=123.61 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=61.6
Q ss_pred CCChHH--------HHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcC
Q psy2520 129 VLSGGE--------RKRLSFATELLTDPALLLCDEPTTGLDSFSASK-LIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 199 (290)
Q Consensus 129 ~LSgGq--------rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~-i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d 199 (290)
.+|||+ +||+++||++..+++|.+| ||+.+|+.+... ++ +..+ +..+.|.|+.+|++ .....+|
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~-~~~~~~~ivls~~l--a~~~~~p 201 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEF-KGTGNMELVLDRRL--AERRIFP 201 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHH-hcCCCcEEEEchHH--hhCCCCC
Confidence 389999 9999999999899999999 999999655544 54 5555 32467999999986 3467899
Q ss_pred eEEEEeCCeE
Q psy2520 200 KIILLADSRT 209 (290)
Q Consensus 200 ~v~~l~~G~i 209 (290)
.|.+|+.|.+
T Consensus 202 aI~vl~s~sr 211 (249)
T cd01128 202 AIDILKSGTR 211 (249)
T ss_pred eEEEcCCCCc
Confidence 9999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=146.35 Aligned_cols=79 Identities=23% Similarity=0.219 Sum_probs=72.4
Q ss_pred CCCCChHHHHHHHHHHHHHh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHh
Q psy2520 127 KVVLSGGERKRLSFATELLT----------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 196 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~~----------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~ 196 (290)
+..|||||++||+||+||+. +|++||+||||++||+.+...+++.|..+. ..|++|+||||++ .....
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~-~~g~~i~iisH~~-~~~~~ 1025 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIR-EGSKMIGIISHVP-EFRER 1025 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCcH-HHHHh
Confidence 56799999999999999986 799999999999999999999999999995 4689999999997 57888
Q ss_pred hcCeEEEEeCC
Q psy2520 197 MFDKIILLADS 207 (290)
Q Consensus 197 ~~d~v~~l~~G 207 (290)
++|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.5e-14 Score=138.61 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=68.7
Q ss_pred CCCCChHHHHHHHHHHHHH----------hCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHH
Q psy2520 127 KVVLSGGERKRLSFATELL----------TDPALLLCDEPT-TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 195 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~----------~~p~llllDEPt-sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~ 195 (290)
+..||||||||++||++|+ .+|+++|||||| ++||+.++..+.+.|.++ .|.|||++||++ ...
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~--~~~ 540 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKD--HDP 540 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECch--hch
Confidence 4679999999999999987 599999999998 789999999999999987 378999999996 356
Q ss_pred hhcCeEEEEeC-CeE
Q psy2520 196 DMFDKIILLAD-SRT 209 (290)
Q Consensus 196 ~~~d~v~~l~~-G~i 209 (290)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999986 543
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.6e-14 Score=144.64 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=62.8
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
.+.+|+||+|++.|++++ .+|+++|+|||++|+||.....+.. ++..+ .+.|.++|++||++ ......+++..++
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l-~~~~~~vIitTH~~-el~~~~~~~~~v~- 463 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYL-RKRGAKIIATTHYK-ELKALMYNREGVE- 463 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH-HHCCCEEEEECChH-HHHHHHhcCCCeE-
Confidence 345999999999999988 8999999999999999999988854 67777 45689999999995 3333345554443
Q ss_pred CCeEEE
Q psy2520 206 DSRTAF 211 (290)
Q Consensus 206 ~G~i~~ 211 (290)
++.+.+
T Consensus 464 ~~~~~~ 469 (782)
T PRK00409 464 NASVEF 469 (782)
T ss_pred EEEEEE
Confidence 455544
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-13 Score=135.78 Aligned_cols=75 Identities=25% Similarity=0.511 Sum_probs=68.4
Q ss_pred CCChHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 129 VLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 129 ~LSgGqrqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
.|||||+|||+||++++. +|+++|||||++|||+.++..+.+.|+++ ++ +.+||+|||++ .+..+||+.+.+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l-~~-~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL-GE-STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-hc-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 489999999999999997 68999999999999999999999999999 44 68999999997 356899999999
Q ss_pred eCC
Q psy2520 205 ADS 207 (290)
Q Consensus 205 ~~G 207 (290)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 875
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=124.47 Aligned_cols=166 Identities=20% Similarity=0.219 Sum_probs=108.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec---Cc---------cccccEEEEccCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV---EG---------KFRSACGFMYQHDLF 71 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~---~~---------~~~~~ig~v~Q~~~~ 71 (290)
+++ +.+.+|++++|+|+||+|||||+++|+|..+++ .|.|.+.|+.- .. .+++.+.++.+.+.
T Consensus 150 d~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~- 224 (438)
T PRK07721 150 DSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ- 224 (438)
T ss_pred hee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC-
Confidence 345 899999999999999999999999999999884 79999865443 21 24567888876432
Q ss_pred CCCCCHHHHH--HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC--ccCcccCCcCCCCCCCCChHHHHHHHHH-HHHHh
Q psy2520 72 SPSLTVYEHL--YFMALLKLDRRVKAYQRIALINSLLIELGLMN--SQHTRIGSSSITQKVVLSGGERKRLSFA-TELLT 146 (290)
Q Consensus 72 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~v~~~~~~~~~~LSgGqrqRv~ia-~aL~~ 146 (290)
++.+-+ .+.+ -.+.+.+...|-.- ..|. |+ |.+-| |.+.
T Consensus 225 ----~~~~r~~~~~~a--------------~~iAEyfr~~g~~Vll~~Ds------------lt-----r~A~A~rEis- 268 (438)
T PRK07721 225 ----PALMRIKGAYTA--------------TAIAEYFRDQGLNVMLMMDS------------VT-----RVAMAQREIG- 268 (438)
T ss_pred ----CHHHHHHHHHHH--------------HHHHHHHHHCCCcEEEEEeC------------hH-----HHHHHHHHHH-
Confidence 111111 1110 00112222222110 0111 11 11111 1111
Q ss_pred CCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 147 DPALLLCDEP--TTGLDSFSASKLIRMMRELTS-QRKK-----TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 147 ~p~llllDEP--tsgLD~~~~~~i~~~l~~l~~-~~g~-----tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
+.+.|| |+|+||.....+.+++.++.. +.|. ||++.+||+. ..+||++..|.+|+++.+++..+
T Consensus 269 ----l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 ----LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN---EPIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ----HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC---chhhhhEEEecCEEEEEeccHHH
Confidence 112454 789999999999999999853 3575 9999999985 37899999999999999987763
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.6e-13 Score=115.94 Aligned_cols=62 Identities=37% Similarity=0.579 Sum_probs=52.5
Q ss_pred CCCChHHHHHHHHHHHHHhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 128 VVLSGGERKRLSFATELLTDP---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
..+|.|++|.+.|+..|...+ .++++|||-++|+|..+..++++|+..+. .+..+|++||.|
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp 299 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSP 299 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-G
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccc
Confidence 447999999999999998777 89999999999999999999999988843 578999999987
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=111.11 Aligned_cols=78 Identities=17% Similarity=0.052 Sum_probs=63.2
Q ss_pred CCCCChHHHH------HHHHHHHHHhCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH-----
Q psy2520 127 KVVLSGGERK------RLSFATELLTDPALLLCDEPTTGLD---SFSASKLIRMMRELTSQRKKTVLCTIHQPSS----- 192 (290)
Q Consensus 127 ~~~LSgGqrq------Rv~ia~aL~~~p~llllDEPtsgLD---~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~----- 192 (290)
+..+|+|++| ......+...+|+++++|||++.+| ...+..+.++++.++ +.|.|+|+++|+...
T Consensus 69 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~-~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 69 PDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALK-RFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHH-HCCCEEEEEeccccCCCccc
Confidence 4459999998 5555555678999999999999999 888888899999984 458999999998532
Q ss_pred ---HHHhhcCeEEEEe
Q psy2520 193 ---ELIDMFDKIILLA 205 (290)
Q Consensus 193 ---~~~~~~d~v~~l~ 205 (290)
.+..+||.++.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 1567899999887
|
A related protein is found in archaea. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-13 Score=116.31 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=62.2
Q ss_pred CCChHHHHHHHHHHHHHhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 129 VLSGGERKRLSFATELLTDPALLLCDEP--TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 129 ~LSgGqrqRv~ia~aL~~~p~llllDEP--tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
.+||+++-++.+++..+.+|+++++||| +.++|+. +.+.+..+. +.|.++|+++|+. .+..++|++..+.+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~-~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVL-DSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHH-hCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 4999999999999999999999999995 4455543 456666653 4578999999983 56788999999999
Q ss_pred CeEEEE
Q psy2520 207 SRTAFI 212 (290)
Q Consensus 207 G~i~~~ 212 (290)
|++...
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 988654
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-12 Score=114.34 Aligned_cols=151 Identities=21% Similarity=0.280 Sum_probs=90.6
Q ss_pred EEEEeCCeEEEEECCCCChHHHH-HHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTL-LAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTL-l~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
++-+++|++++|+|||||||||| ++++++..++. +. +.|+..+ .+..+.+....
T Consensus 18 ~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~----------------~~yi~~e------~~~~~~~~~~~ 72 (230)
T PRK08533 18 GGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNG---YS----------------VSYVSTQ------LTTTEFIKQMM 72 (230)
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC---Cc----------------EEEEeCC------CCHHHHHHHHH
Confidence 45688999999999999999999 78989876542 11 3343321 24444444432
Q ss_pred HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH----hCCCeEEEeCCCCCC-
Q psy2520 86 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL----TDPALLLCDEPTTGL- 160 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~----~~p~llllDEPtsgL- 160 (290)
.+... . +++... +.-...+- ...+|+++.++..+.+.+- .+|+++++||||+++
T Consensus 73 ~~g~~--~---------~~~~~~-~~l~~~~~---------~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~ 131 (230)
T PRK08533 73 SLGYD--I---------NKKLIS-GKLLYIPV---------YPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLIS 131 (230)
T ss_pred HhCCc--h---------HHHhhc-CcEEEEEe---------cccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhc
Confidence 22110 0 111111 10000010 0126777666655555443 369999999999999
Q ss_pred ---CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHH-------HHhhcCeEEEEe
Q psy2520 161 ---DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE-------LIDMFDKIILLA 205 (290)
Q Consensus 161 ---D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~-------~~~~~d~v~~l~ 205 (290)
|+.....+++.++.++ +.|.|+++++|. ... +..++|-|+.|.
T Consensus 132 ~~~d~~~~~~l~~~l~~l~-~~g~tvi~t~~~-~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 132 NDASEVAVNDLMAFFKRIS-SLNKVIILTANP-KELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred CCcchHHHHHHHHHHHHHH-hCCCEEEEEecc-cccccccceeEEEeeeEEEEEE
Confidence 8888899999999984 457777665553 210 123456677665
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.1e-12 Score=124.81 Aligned_cols=137 Identities=27% Similarity=0.385 Sum_probs=103.3
Q ss_pred CCCCHHHHHHHHHHhcCchhh--hHHHHHHHH---HHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 73 PSLTVYEHLYFMALLKLDRRV--KAYQRIALI---NSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~--~~~~~~~~~---~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
..|++.+.+.|+..+...... ......+.+ ...|..+||.-. +++. ...|||||.||+-||..+=.
T Consensus 427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~--------a~TLSGGEaQRIRLAtqiGS 498 (935)
T COG0178 427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRS--------AGTLSGGEAQRIRLATQIGS 498 (935)
T ss_pred hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCccccccc--------CCCcChhHHHHHHHHHHhcc
Confidence 446777877777665432211 111111111 234556788654 4555 45699999999999999854
Q ss_pred C--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHH
Q psy2520 147 D--PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAA 218 (290)
Q Consensus 147 ~--p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 218 (290)
+ -=+++||||+.||-+..-.++++.|+++ ++.|-|+|+|.||. +....||+|+-| +.|+|++.|+++++
T Consensus 499 ~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~L-RDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i 575 (935)
T COG0178 499 GLTGVLYVLDEPSIGLHQRDNERLIETLKRL-RDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEEL 575 (935)
T ss_pred cceeeEEEecCCccCCChhhHHHHHHHHHHH-HhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHH
Confidence 3 3578999999999999999999999999 67799999999994 678999999987 56899999999998
Q ss_pred HH
Q psy2520 219 LA 220 (290)
Q Consensus 219 ~~ 220 (290)
+.
T Consensus 576 ~~ 577 (935)
T COG0178 576 LA 577 (935)
T ss_pred Hh
Confidence 74
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-12 Score=135.49 Aligned_cols=77 Identities=34% Similarity=0.419 Sum_probs=66.8
Q ss_pred CCCCChHHHHH------HHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCe
Q psy2520 127 KVVLSGGERKR------LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 200 (290)
Q Consensus 127 ~~~LSgGqrqR------v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~ 200 (290)
+..|||||+|+ ++||++++.+|+++||||||++||+..+..+.++|..+. ..+.+||++||++ .+...||+
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~-~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYL-RKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHH-hcCCEEEEEECCH--HHHHhCCe
Confidence 56799999995 555567889999999999999999999999999999984 4478999999996 46789999
Q ss_pred EEEEeC
Q psy2520 201 IILLAD 206 (290)
Q Consensus 201 v~~l~~ 206 (290)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-12 Score=114.61 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=83.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+++..++|++++|+||||+|||||++++++..--. ..|. .+... ...++++ +.++..+...|++..
T Consensus 21 ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G~------~vpa~-~~~i~~~---~~i~~~~~~~d~~~~ 88 (218)
T cd03286 21 NDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMGM------DVPAK-SMRLSLV---DRIFTRIGARDDIMK 88 (218)
T ss_pred eeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcCC------ccCcc-ccEeccc---cEEEEecCccccccc
Confidence 5789999999999999999999999999998753210 0121 11000 0112211 111222222222221
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
+.. .+. .|-++++-....+.+|+++|+|||++|+|+.
T Consensus 89 ~~S------------------------------------------tF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~ 125 (218)
T cd03286 89 GES------------------------------------------TFM-VELSETANILRHATPDSLVILDELGRGTSTH 125 (218)
T ss_pred Ccc------------------------------------------hHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCch
Confidence 100 000 1223333333335689999999999999999
Q ss_pred HHHHHHHH-HHHHHhcCCcEEEEEeCCCcHHHHhh
Q psy2520 164 SASKLIRM-MRELTSQRKKTVLCTIHQPSSELIDM 197 (290)
Q Consensus 164 ~~~~i~~~-l~~l~~~~g~tii~~tH~~~~~~~~~ 197 (290)
....+... ++.+.+..+.++|++||++ ..+..+
T Consensus 126 dg~~la~ail~~L~~~~~~~~i~~TH~~-el~~~~ 159 (218)
T cd03286 126 DGYAIAHAVLEYLVKKVKCLTLFSTHYH-SLCDEF 159 (218)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeccH-HHHHHh
Confidence 99888887 7777433389999999996 334444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-12 Score=117.12 Aligned_cols=141 Identities=19% Similarity=0.255 Sum_probs=94.5
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe-cCccccccEEEEccCCC-CCCCCCHHHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP-VEGKFRSACGFMYQHDL-FSPSLTVYEHLYFM 84 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~-~~~~~~~~ig~v~Q~~~-~~~~lTv~e~l~~~ 84 (290)
++.++.|+.++|+||+|||||||+++|++.+++. .|.+.+.... +....+..+.++.+... -...
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~---------- 204 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGGQGLAK---------- 204 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCCCCcCc----------
Confidence 4567789999999999999999999999999874 5777774311 00001122222222100 0000
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHH
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~ 164 (290)
.+- .-.++.+|.++|+++++|||.+
T Consensus 205 ---------------------------------------------~~~----~~~l~~~Lr~~pd~ii~gE~r~------ 229 (308)
T TIGR02788 205 ---------------------------------------------VTP----KDLLQSCLRMRPDRIILGELRG------ 229 (308)
T ss_pred ---------------------------------------------cCH----HHHHHHHhcCCCCeEEEeccCC------
Confidence 111 1134556778999999999996
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.+.+++++.+. ..+.+++.++|..+ +....+|+..|..|++...|.+.+.+
T Consensus 230 -~e~~~~l~a~~-~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 230 -DEAFDFIRAVN-TGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred -HHHHHHHHHHh-cCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 34567777773 32345799999964 67779999999999988888877665
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-12 Score=131.71 Aligned_cols=77 Identities=30% Similarity=0.369 Sum_probs=66.3
Q ss_pred CCCCChHHHHHHHH------HHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-C-cEEEEEeCCCcHHHHhhc
Q psy2520 127 KVVLSGGERKRLSF------ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR-K-KTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 127 ~~~LSgGqrqRv~i------a~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~-g-~tii~~tH~~~~~~~~~~ 198 (290)
+..|||||++|++| |++|+.+|++++|||||++||+..+..+.++|....+.. | .+||++||++ .+...|
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~~ 876 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSVA 876 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHhc
Confidence 56799999999976 489999999999999999999999999999998643433 3 4899999996 356899
Q ss_pred CeEEEEe
Q psy2520 199 DKIILLA 205 (290)
Q Consensus 199 d~v~~l~ 205 (290)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=103.87 Aligned_cols=76 Identities=21% Similarity=0.391 Sum_probs=58.7
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhh-cCeEEEEeCCe
Q psy2520 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSR 208 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~-~d~v~~l~~G~ 208 (290)
.|-||-=.--+.+. .++.-++|||||-++|.|.-+..++.+|++++ +.|..+|++||.|. +..+ --.|+-++.+.
T Consensus 130 ~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la-~sGaQ~IiATHSPi--LlAiP~A~I~~~~~~g 205 (233)
T COG3910 130 MSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLA-DSGAQIIIATHSPI--LLAIPGAEIYEISESG 205 (233)
T ss_pred hccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHH-hcCCeEEEEecChh--heeCCCcEEEEEecCC
Confidence 78888654444444 45678999999999999999999999999994 56899999999984 3333 35677777664
Q ss_pred E
Q psy2520 209 T 209 (290)
Q Consensus 209 i 209 (290)
+
T Consensus 206 ~ 206 (233)
T COG3910 206 I 206 (233)
T ss_pred c
Confidence 3
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.7e-12 Score=132.87 Aligned_cols=78 Identities=24% Similarity=0.150 Sum_probs=68.8
Q ss_pred CCCCChHHHHHHHHHHHHHh--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 127 KVVLSGGERKRLSFATELLT--------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~~--------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
+..|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+ ++.|+||++|||.. ....++.
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l-~~~g~~v~iisH~~-~l~~~i~ 1024 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDAL-NASGKTIGVISHVE-AMKERIP 1024 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-HHCCCEEEEEecHH-HHHHhcc
Confidence 56799999999999999996 89999999999999999999999999999 45699999999975 4555667
Q ss_pred CeEEEEeC
Q psy2520 199 DKIILLAD 206 (290)
Q Consensus 199 d~v~~l~~ 206 (290)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 77777764
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.4e-12 Score=134.60 Aligned_cols=71 Identities=25% Similarity=0.306 Sum_probs=62.5
Q ss_pred CCCCChHHHH------HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEeCCCcHHHHh
Q psy2520 127 KVVLSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS----QRKKTVLCTIHQPSSELID 196 (290)
Q Consensus 127 ~~~LSgGqrq------Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~----~~g~tii~~tH~~~~~~~~ 196 (290)
.+.||||||| |++||++|+.+|++|+|||||+|||+.+...+.+.|..+.. ..|.+||++||++ .++..
T Consensus 1197 ~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~ 1275 (1311)
T TIGR00606 1197 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVEL 1275 (1311)
T ss_pred CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHH
Confidence 3459999999 99999999999999999999999999999999999988732 2478999999997 57777
Q ss_pred hc
Q psy2520 197 MF 198 (290)
Q Consensus 197 ~~ 198 (290)
+|
T Consensus 1276 ~~ 1277 (1311)
T TIGR00606 1276 LG 1277 (1311)
T ss_pred Hh
Confidence 65
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-11 Score=100.03 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 130 LSGGERKRLSFATELLTDPALLLCDEPTT----------GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~~p~llllDEPts----------gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
.+.++.+++..+++...+|+++++|||++ +.|......+.+++... ++.+.|+|+++|...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~ 138 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPS 138 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCC
Confidence 45666677888889999999999999995 45555556666666665 556999999999864
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-10 Score=119.27 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=59.4
Q ss_pred HhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHH---------hhcCeEEEEeCCeEEEEcC
Q psy2520 145 LTDPALLLCDEPTTGL-DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI---------DMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 145 ~~~p~llllDEPtsgL-D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~---------~~~d~v~~l~~G~i~~~g~ 214 (290)
..+|+++++|||+.+| |+..+..+.+.++.+ ++.|.+++++||++. ++. ..|+++++|.+|++...+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~-RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVL-RKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 4799999999999999 799999999999999 456889999999984 444 5799999999999876654
Q ss_pred H
Q psy2520 215 K 215 (290)
Q Consensus 215 ~ 215 (290)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-11 Score=130.33 Aligned_cols=75 Identities=17% Similarity=0.347 Sum_probs=65.9
Q ss_pred CCCCChHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEE
Q psy2520 127 KVVLSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 202 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~ 202 (290)
+..|||||++|++||++++ ..|+++||||||++||+.++..+.++|+.++ + +.++|+|||++. ...+||+++
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~-~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFS-K-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhc-c-CCEEEEEEcChh--HHHHhhhHe
Confidence 5679999999999999985 5779999999999999999999999999984 4 478999999974 457899998
Q ss_pred EEe
Q psy2520 203 LLA 205 (290)
Q Consensus 203 ~l~ 205 (290)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=111.54 Aligned_cols=148 Identities=20% Similarity=0.106 Sum_probs=103.8
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
..+.+.+|+.++|+|+||+|||||+++|++..+++ .|.|.+.|+.- .+|.|.+....
T Consensus 149 ~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg--------------------~ev~e~~~~~l 205 (432)
T PRK06793 149 SMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERG--------------------REVKDFIRKEL 205 (432)
T ss_pred ccceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCc--------------------ccHHHHHHHHh
Confidence 45899999999999999999999999999998874 57666555431 35666544221
Q ss_pred HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH-------hCCCeEEEeCCCC
Q psy2520 86 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-------TDPALLLCDEPTT 158 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~-------~~p~llllDEPts 158 (290)
.. -++... ..+-. ..+.|.|+|+|++.+.+.+ .++-++++|+||.
T Consensus 206 ~~---------------------~gl~~t--vvv~~-----tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 206 GE---------------------EGMRKS--VVVVA-----TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred hh---------------------ccccee--EEEEE-----CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 11 111100 00111 3568999999999999887 7999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEE
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 212 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~ 212 (290)
..|+. +++-..+.+... .|.+..+.+|. . ++++|......|.|...
T Consensus 258 ~a~A~--reisl~~~e~p~-~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~ 303 (432)
T PRK06793 258 FADAR--RSVDIAVKELPI-GGKTLLMESYM-K----KLLERSGKTQKGSITGI 303 (432)
T ss_pred HHHHH--HHHHHHhcCCCC-CCeeeeeeccc-h----hHHHHhccCCCcceEEE
Confidence 99996 666666666633 48888888883 2 34444444578887544
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.15 E-value=9e-11 Score=125.27 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=67.5
Q ss_pred CCCCChHHHHHHHHHHHHHh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEE
Q psy2520 127 KVVLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 202 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~ 202 (290)
+..||||||++++||++|+. .|+++|||||+++||+..+..+.++|..+ .. +.++|++||++ ....+||+++
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~-~~-~~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREK-AG-EAQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHh-cC-CCeEEEEECcH--HHHHhcceeE
Confidence 56799999999999999985 67999999999999999999999999998 43 47899999996 4668999998
Q ss_pred EEeC
Q psy2520 203 LLAD 206 (290)
Q Consensus 203 ~l~~ 206 (290)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8764
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-10 Score=98.54 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=41.9
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 139 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 139 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
+++++|..+|+++++|||. |+.... ..++ . ...|..++.++|..+ .....+|++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~---~~l~-~-a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIR---LALT-A-AETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHH---HHHH-H-HHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778888999999999996 555433 3333 3 235889999999963 457789987774
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-10 Score=120.75 Aligned_cols=78 Identities=28% Similarity=0.423 Sum_probs=66.1
Q ss_pred CCCCChHHHH------HHHHHHHHHhC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEeCCCcHH
Q psy2520 127 KVVLSGGERK------RLSFATELLTD-----P-ALLLCDEPTTGLDSFSASKLIRMMRELTSQRK-KTVLCTIHQPSSE 193 (290)
Q Consensus 127 ~~~LSgGqrq------Rv~ia~aL~~~-----p-~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g-~tii~~tH~~~~~ 193 (290)
+..||||||+ |+++|++++.+ | +++||||||++||+..+..+.++|..+. ..| .+||++||++.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~-~~~~~qviiish~~~-- 855 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMR-RLGVEQIVVVSHDDE-- 855 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHH-hcCCCeEEEEECChH--
Confidence 5679999999 89999998864 3 6799999999999999999999999984 445 48999999973
Q ss_pred HHhhcCeEEEEeCC
Q psy2520 194 LIDMFDKIILLADS 207 (290)
Q Consensus 194 ~~~~~d~v~~l~~G 207 (290)
....||+++.|...
T Consensus 856 ~~~~ad~~~~~~~~ 869 (880)
T PRK02224 856 LVGAADDLVRVEKD 869 (880)
T ss_pred HHHhcCeeEEeecC
Confidence 45789999999643
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-09 Score=94.16 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=57.2
Q ss_pred CChHHHHHHHHHHHHHh--CCCeEEEeCCCCC---CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH------HHHhhc
Q psy2520 130 LSGGERKRLSFATELLT--DPALLLCDEPTTG---LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS------ELIDMF 198 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~--~p~llllDEPtsg---LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~------~~~~~~ 198 (290)
.|.++.+.+..+..++. +|+++++||||+. .|......++..++.++ +.|.|+++++|+... .+..++
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~-~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLV-DLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 67889999999999987 9999999999964 55555566666677764 458899999997531 145567
Q ss_pred CeEEEEeC
Q psy2520 199 DKIILLAD 206 (290)
Q Consensus 199 d~v~~l~~ 206 (290)
|-++.|..
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 77777763
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-10 Score=112.41 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=47.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCcc-EEEECCEecCc---cccccEEEEccC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG-DIRVNGKPVEG---KFRSACGFMYQH 68 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G-~I~i~G~~~~~---~~~~~ig~v~Q~ 68 (290)
.+||+++.+||+++|+|||||||||||+ +|+..|. +| +|.++|.++.. .....+-+|||+
T Consensus 23 ~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~ 86 (504)
T TIGR03238 23 VKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHSFSPNKNAMETLDEIFDG 86 (504)
T ss_pred hCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEECCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999999 7777774 56 89999999853 111112278885
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=97.14 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=40.1
Q ss_pred HHhCCCeEEEeCCCCC------CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 144 LLTDPALLLCDEPTTG------LDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 144 L~~~p~llllDEPtsg------LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
...+|+++++| |+++ +|+.....+++.|++++++.|.+||+++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 7754 7999999999999999777799999999985
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-08 Score=79.44 Aligned_cols=119 Identities=29% Similarity=0.382 Sum_probs=77.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcCch
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR 91 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~ 91 (290)
++..+.|+||+|+||||+++.|+..+.... .+-+.++....... +..+...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~------------------~~~~~~~--------- 51 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEE------------------VLDQLLL--------- 51 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEcccc------------------CHHHHHh---------
Confidence 367899999999999999999999877520 13445544332110 0000000
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH-
Q psy2520 92 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR- 170 (290)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~- 170 (290)
. ..... .....+++..+..++++-..+|.++++||+..-.+.........
T Consensus 52 ------------~---------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~ 102 (148)
T smart00382 52 ------------I---------IVGGK--------KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLL 102 (148)
T ss_pred ------------h---------hhhcc--------CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhh
Confidence 0 00000 12367788888888888888899999999999999988877664
Q ss_pred ----HHHHHHhcCCcEEEEEeC
Q psy2520 171 ----MMRELTSQRKKTVLCTIH 188 (290)
Q Consensus 171 ----~l~~l~~~~g~tii~~tH 188 (290)
.........+..+|+++|
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 103 EELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred hhhHHHHHHHhcCCCEEEEEeC
Confidence 122222345778888888
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=104.14 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=89.7
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFM 84 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~ 84 (290)
+.+..+..|++++++|||||||||++..|++.+... .|. ++|+++.++. ...+++|+|.++
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~-------------~kV~LI~~Dt---~RigA~EQLr~~ 308 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA-------------SKVALLTTDS---YRIGGHEQLRIY 308 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC-------------CeEEEEeCCc---cchhHHHHHHHH
Confidence 345567789999999999999999999999977542 342 2478888875 346899999988
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHH-HHHHHHHHHhCC-----CeEEEeCCCC
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK-RLSFATELLTDP-----ALLLCDEPTT 158 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrq-Rv~ia~aL~~~p-----~llllDEPts 158 (290)
+........... ...+......++.+.....|.+ ...+++. .+.-..+++.++ .+|+||.++.
T Consensus 309 AeilGVpv~~~~---~~~Dl~~aL~~L~d~d~VLIDT--------aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 309 GKILGVPVHAVK---DAADLRLALSELRNKHIVLIDT--------IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHhCCCeeccC---CchhHHHHHHhccCCCeEEeCC--------CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 765432211111 1122334445666655555433 3323322 233344444454 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeC
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIH 188 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH 188 (290)
+ ..+.+.++.+ +..+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f-~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAY-RGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHh-ccCCCCEEEEeC
Confidence 7 3445555555 334555555554
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=91.83 Aligned_cols=78 Identities=22% Similarity=0.197 Sum_probs=58.4
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCC--CCCCCCCHHHHHHHH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHD--LFSPSLTVYEHLYFM 84 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~--~~~~~lTv~e~l~~~ 84 (290)
+.+++|+.++|+||||||||||+++|+|+++|+ .|.|.+.+..-.. ..+..+++++|.+ ...+..++.+.+...
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHH
Confidence 457889999999999999999999999999874 6999997743211 2234567776643 345678899988876
Q ss_pred HHhc
Q psy2520 85 ALLK 88 (290)
Q Consensus 85 ~~~~ 88 (290)
.+..
T Consensus 97 lR~~ 100 (186)
T cd01130 97 LRMR 100 (186)
T ss_pred hccC
Confidence 6543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.3e-09 Score=98.19 Aligned_cols=124 Identities=25% Similarity=0.352 Sum_probs=76.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcCc
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD 90 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~ 90 (290)
.++.++.|.||+||||||+++.+.+.+.+. ..|.|...+.++........+.+.|..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~tiEdp~E~~~~~~~~~i~q~e--------------------- 176 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIITIEDPIEYVHRNKRSLINQRE--------------------- 176 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEEEcCChhhhccCccceEEccc---------------------
Confidence 467899999999999999999999866532 246666544332211000111111100
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2520 91 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~ 170 (290)
.|. ...+ ---+++++|-++|+++++||+. |+.+....++
T Consensus 177 ------------------vg~----------------~~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~ 215 (343)
T TIGR01420 177 ------------------VGL----------------DTLS----FANALRAALREDPDVILIGEMR---DLETVELALT 215 (343)
T ss_pred ------------------cCC----------------CCcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH
Confidence 000 0001 1224667888999999999997 8877754443
Q ss_pred HHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 171 MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 171 ~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
. ...|.+++.+.|-.+ .....+|++-|-
T Consensus 216 ---a--a~tGh~v~~T~Ha~~--~~~~~~Rl~~~~ 243 (343)
T TIGR01420 216 ---A--AETGHLVFGTLHTNS--AAQTIERIIDVF 243 (343)
T ss_pred ---H--HHcCCcEEEEEcCCC--HHHHHHHHHHhc
Confidence 2 345889999999853 456778876653
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-09 Score=96.12 Aligned_cols=42 Identities=29% Similarity=0.414 Sum_probs=30.8
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHH--cCCCCCCCCccEEEECCE
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALS--QRLPDDCIIDGDIRVNGK 52 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~--G~~~~~~~~~G~I~i~G~ 52 (290)
.+=+++|++++|.||+|||||||...++ ++ .+. ++-+++..+
T Consensus 14 ~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g---~~~~~is~e 57 (229)
T TIGR03881 14 EGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDG---DPVIYVTTE 57 (229)
T ss_pred cCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcC---CeEEEEEcc
Confidence 3457899999999999999999987654 43 332 345666654
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-10 Score=111.62 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=94.9
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHH--HcCCCCCCCCccEEEECCEecCccc---cccEEEEccCCCCCCCCCHHHHHH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAAL--SQRLPDDCIIDGDIRVNGKPVEGKF---RSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l--~G~~~~~~~~~G~I~i~G~~~~~~~---~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
+=+.+|..+.|.||+|||||||..-+ .|..... +.-+++..+.-...+ .+.+|+-+++..--..+.+.+
T Consensus 16 GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~--- 89 (484)
T TIGR02655 16 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILD--- 89 (484)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEe---
Confidence 44778999999999999999998755 4554432 355666554432221 233555444211000000000
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHH--HHHHhCCCeEEEeCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA--TELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia--~aL~~~p~llllDEPtsgL 160 (290)
.. ... ....+++.+++.+..++. ...+|+|++|||.|+ .+|...|+..
T Consensus 90 ------~~---~~~----~~~~~~~~~~l~~~l~~i--------~~~ls~g~~qRVvIDSl~aL~~~~~~~--------- 139 (484)
T TIGR02655 90 ------AS---PDP----EGQDVVGGFDLSALIERI--------NYAIRKYKAKRVSIDSVTAVFQQYDAV--------- 139 (484)
T ss_pred ------cC---chh----ccccccccCCHHHHHHHH--------HHHHHHhCCcEEEEeehhHhhhhcCch---------
Confidence 00 000 000122233333344443 234999999999999 5666665443
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHH-------H-HhhcCeEEEEe
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE-------L-IDMFDKIILLA 205 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~-------~-~~~~d~v~~l~ 205 (290)
+..+..++++++.+ ++.|.|+|+++|++... + ..+||.|+.|+
T Consensus 140 -~~~r~~l~~Li~~L-~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -SVVRREIFRLVARL-KQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -HHHHHHHHHHHHHH-HHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 56778899999998 55699999999986310 1 45789999886
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-09 Score=103.58 Aligned_cols=83 Identities=23% Similarity=0.194 Sum_probs=65.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----------cccccEEEEccCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----------KFRSACGFMYQHDLFSP 73 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----------~~~~~ig~v~Q~~~~~~ 73 (290)
+++ +.+.+|++++|+|+||||||||+++|+|+.+++...-|.|-.+|+++.. ..+..+++++|+...+.
T Consensus 147 D~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~ 225 (434)
T PRK07196 147 NGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLM 225 (434)
T ss_pred cce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhh
Confidence 356 9999999999999999999999999999988752122555555555432 12457999999999999
Q ss_pred CCCHHHHHHHHHHh
Q psy2520 74 SLTVYEHLYFMALL 87 (290)
Q Consensus 74 ~lTv~e~l~~~~~~ 87 (290)
.+++.+++.+.+..
T Consensus 226 rl~a~e~a~~iAEy 239 (434)
T PRK07196 226 RIKATELCHAIATY 239 (434)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999877654
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.4e-09 Score=100.23 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=54.8
Q ss_pred CCCChHHHHHHHHHHHHHh---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 128 VVLSGGERKRLSFATELLT---------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~~---------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
..+|.||+|++.||.+|+. +|+|||||||+++||+..+..+++.|... |.++++++|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChh
Confidence 3599999999999999999 99999999999999999999999999753 679999999863
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.1e-09 Score=108.79 Aligned_cols=77 Identities=32% Similarity=0.352 Sum_probs=68.0
Q ss_pred CCCCChHHHHHHHHHHHHH------hC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 127 KVVLSGGERKRLSFATELL------TD--PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~------~~--p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
+..|||||+-.++||.+|+ .+ -++|+|||||..||+.....++++|..+. ..+.+|+||||+. ++...+
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~-~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELL-SDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHH-hcCCeEEEEeChH--HHHHhC
Confidence 6779999999999888875 35 69999999999999999999999999994 4589999999984 678899
Q ss_pred CeEEEEeC
Q psy2520 199 DKIILLAD 206 (290)
Q Consensus 199 d~v~~l~~ 206 (290)
|.++.+..
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99988864
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.1e-09 Score=97.15 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=63.0
Q ss_pred CCCChHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 128 VVLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
.-+|+||++++++|..|+ .+|+++|||||+++||+..+..+++.|... . .++|-+|+. ...+
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~-~---q~~it~t~~-----~~~~ 332 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL-P---QAIVAGTEA-----PPGA 332 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC-C---cEEEEcCCC-----CCCC
Confidence 358999999999999999 899999999999999999999999888654 1 244444432 4689
Q ss_pred CeEEEEeCCeEEEEc
Q psy2520 199 DKIILLADSRTAFIG 213 (290)
Q Consensus 199 d~v~~l~~G~i~~~g 213 (290)
|+++.+.+|++.-..
T Consensus 333 ~~~~~~~~~~~~~~~ 347 (349)
T PRK14079 333 ALTLRIEAGVFTPEA 347 (349)
T ss_pred ceEEEEeccEecCCC
Confidence 999999999875443
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-09 Score=90.90 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=64.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcC-chhh
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL-DRRV 93 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~-~~~~ 93 (290)
+++|.||||||||||.++|++++. .|.+.+-+.+ + ++..++..+.......... +...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-----~~~~~v~~~D---------------~-~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-----NPKVVIISQD---------------S-YYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----CCCeEEEEec---------------c-cccccccccHHHhccCCCCCCCcc
Confidence 579999999999999999999872 2444333222 1 1111222221111100000 0001
Q ss_pred hHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 94 KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 94 ~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
. .+...+.+..+...+..+.+ ..+.|.|++++..+ .+..|+++|+|.|+.+.++
T Consensus 60 ~----~~~~~~~l~~l~~~~~~~~p--------~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 D----FDLLISHLQDLKNGKSVEIP--------VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred c----HHHHHHHHHHHHCCCCEecc--------ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1 12233455555554444444 34488888876555 5788999999999999987
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-07 Score=96.98 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=53.2
Q ss_pred HHHHHHhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHh--hcCeEEEEeCCeEE
Q psy2520 140 FATELLTDPALLLCDEPTTGL-DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID--MFDKIILLADSRTA 210 (290)
Q Consensus 140 ia~aL~~~p~llllDEPtsgL-D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~--~~d~v~~l~~G~i~ 210 (290)
|++++..+|+++++|||+.+| |+..+..+.+.++.++ +.|.+++++||++. ++.. .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~R-K~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLR-KANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 567788999999999999999 7999999999999994 55889999999985 5544 33443333344443
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-08 Score=105.75 Aligned_cols=67 Identities=24% Similarity=0.163 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHHHh--CCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCe
Q psy2520 130 LSGGERKRLSFATELLT--DPALLLCDEP---TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 200 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~--~p~llllDEP---tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~ 200 (290)
+|.=+.....++.+|-. ++.++|+||| |+.+|..+ ..+.++..+.+..+.+++++||.. ++..++++
T Consensus 667 ~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 667 RSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 66666666666666654 8999999999 88899544 455666666443368999999983 67777765
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=91.14 Aligned_cols=163 Identities=21% Similarity=0.219 Sum_probs=99.0
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------------cccccEEEEccCCCCCCCC
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------------~~~~~ig~v~Q~~~~~~~l 75 (290)
+.+.+|+.++|+|+||+|||||+++|++...++ .|.+...|+.-.. .+++.+-++.+.+.
T Consensus 158 ~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~----- 229 (440)
T TIGR01026 158 LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQ----- 229 (440)
T ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCC-----
Confidence 889999999999999999999999999998874 5666665554321 12233444443221
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC--ccCcccCCcCCCCCCCCChHHHHHHHHHHHH--HhCCCeE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN--SQHTRIGSSSITQKVVLSGGERKRLSFATEL--LTDPALL 151 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL--~~~p~ll 151 (290)
++.+-..- +.. .-.+.+.+...|-.- ..|. |+ | .|+|+ +. +
T Consensus 230 ~p~~r~~~-~~~-----------a~t~AE~frd~G~~Vll~~Ds------------lT-----r--~A~A~REis----l 274 (440)
T TIGR01026 230 SPLLRLKG-AYV-----------ATAIAEYFRDQGKDVLLLMDS------------VT-----R--FAMAQREIG----L 274 (440)
T ss_pred CHHHHHHH-HHH-----------HHHHHHHHHHCCCCEEEEEeC------------hH-----H--HHHHHHHHH----H
Confidence 11111110 000 000112222223210 0111 22 1 11111 10 2
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHhcCCc-------EEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 152 LCDEP--TTGLDSFSASKLIRMMRELTSQRKK-------TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 152 llDEP--tsgLD~~~~~~i~~~l~~l~~~~g~-------tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
.+.|| +.|+||.....+.+++.+.. ..+. ||++.+||+. ..++|++..+.+|+++.+....+
T Consensus 275 ~~ge~P~~~Gypp~~~~~l~~l~ERag-~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 275 AAGEPPATKGYTPSVFSTLPRLLERAG-ASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred hcCCCCcccccChhHHHHHHHHHHHhc-cCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence 23565 45999999999999999984 4466 8888899863 45899999999999999886654
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.9e-09 Score=88.05 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=46.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc--cc-ccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK--FR-SACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~--~~-~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
+|++++|+|+||||||||+++|++++.+ +.++|.++... .+ ...|+.+|+...++..++..++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998765 46788776431 22 235666666544455555555554
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.9e-08 Score=107.71 Aligned_cols=60 Identities=30% Similarity=0.396 Sum_probs=52.8
Q ss_pred CCCCChHHHHHHH----HHHH--------HHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 127 KVVLSGGERKRLS----FATE--------LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 127 ~~~LSgGqrqRv~----ia~a--------L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
...|||||||+++ +|++ +..+|+++||||||+|||+.++..+++++..+ |.++|++||..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 4679999999996 5655 45899999999999999999999999999888 57899999863
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.4e-07 Score=93.50 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=41.8
Q ss_pred HHhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 144 LLTDPALLLCDEPTTGLD-SFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 144 L~~~p~llllDEPtsgLD-~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
+..+|.++++|||...|| +..+..+.+.++.+ ++.|..++++||++.
T Consensus 639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~-RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVL-RKLNTFVIFATQSVE 686 (800)
T ss_pred hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHH
Confidence 456899999999999999 89999999999999 456889999999974
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=102.02 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=36.0
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCE
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK 52 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~ 52 (290)
++..+.+++++|+|++|+|||||++++++.+... ..|.+++++.
T Consensus 201 ~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~ 244 (1153)
T PLN03210 201 HLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRA 244 (1153)
T ss_pred ccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeecc
Confidence 4556789999999999999999999997766542 4799998753
|
syringae 6; Provisional |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-07 Score=90.97 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=45.2
Q ss_pred hCCCeEEEeCCCCCC---------CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH-------HHHhhcCeEEEEeCCe
Q psy2520 146 TDPALLLCDEPTTGL---------DSFSASKLIRMMRELTSQRKKTVLCTIHQPSS-------ELIDMFDKIILLADSR 208 (290)
Q Consensus 146 ~~p~llllDEPtsgL---------D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~-------~~~~~~d~v~~l~~G~ 208 (290)
.+|+++++|.-++=. +....++++..|.+++++.|.|+++++|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999775421 12335566677888877889999999996431 1566899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-07 Score=81.62 Aligned_cols=38 Identities=42% Similarity=0.629 Sum_probs=31.6
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG 56 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~ 56 (290)
|++++|+||||||||||+++|++...+ .+.+++..+..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~------~~~~~~~~~~~ 39 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT------QLLVAHRYITR 39 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC------eEEEcCEECCC
Confidence 789999999999999999999998654 46777766543
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-07 Score=83.78 Aligned_cols=73 Identities=26% Similarity=0.312 Sum_probs=49.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccE----EEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD----IRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 86 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~----I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~ 86 (290)
.+..+++|.||||||||||.++|++++++. .|. |.+++...........|++++.. .+..+++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~---~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD---GELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc---cCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 346799999999999999999999999884 577 55554333222334467766532 3355667666655443
Q ss_pred h
Q psy2520 87 L 87 (290)
Q Consensus 87 ~ 87 (290)
+
T Consensus 107 l 107 (229)
T PRK09270 107 L 107 (229)
T ss_pred H
Confidence 3
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.49 E-value=3e-06 Score=76.49 Aligned_cols=55 Identities=7% Similarity=0.094 Sum_probs=39.4
Q ss_pred HHHHHHHHHHH--hCCCeEEEeCCCCCCCH-------H-HHHHHHHHHHHHHhcCCcEEEEEeCC
Q psy2520 135 RKRLSFATELL--TDPALLLCDEPTTGLDS-------F-SASKLIRMMRELTSQRKKTVLCTIHQ 189 (290)
Q Consensus 135 rqRv~ia~aL~--~~p~llllDEPtsgLD~-------~-~~~~i~~~l~~l~~~~g~tii~~tH~ 189 (290)
...+..++.++ .+|+++++|..+.-.+. . ....++..|+.++++.+.||++++|-
T Consensus 126 ~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 126 DSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred HHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 34555566555 47999999998664332 1 24567778888877789999999984
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-07 Score=89.22 Aligned_cols=60 Identities=30% Similarity=0.369 Sum_probs=48.7
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECC---EecCc--------cccccEEEEccCCC
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG---KPVEG--------KFRSACGFMYQHDL 70 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G---~~~~~--------~~~~~ig~v~Q~~~ 70 (290)
..+.+||.++|+|||||||||||++|+++.+|+ .|.|.+.| +++.. ..++.|+|++|.+.
T Consensus 160 ~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 160 TPLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred ceecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 479999999999999999999999999998884 68888854 55432 12467999999653
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-07 Score=65.39 Aligned_cols=34 Identities=38% Similarity=0.410 Sum_probs=28.3
Q ss_pred eEEEEeC-CeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 6 LTGAALS-GTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 6 is~~~~~-Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.++.+.+ |.++.|.|||||||||||.+|.=++-+
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5677776 569999999999999999998866554
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-07 Score=88.22 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=64.8
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECC---EecCc----cc---cccEEEE-----ccCC--
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG---KPVEG----KF---RSACGFM-----YQHD-- 69 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G---~~~~~----~~---~~~ig~v-----~Q~~-- 69 (290)
.+.+.+|+.++|+|+||||||||+++|+|..++. ..|.|.+.| +++.. .+ ....+++ +|++
T Consensus 158 ~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p~~ 235 (442)
T PRK06315 158 MLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQL 235 (442)
T ss_pred cccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCHHH
Confidence 4899999999999999999999999999987542 246777644 54432 11 1234555 8865
Q ss_pred CCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC
Q psy2520 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM 112 (290)
Q Consensus 70 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 112 (290)
.+.+.+ +...++-..+.+............++.++++.++|.
T Consensus 236 rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 236 RLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred HhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 233333 444443333322221112234556778899999984
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.8e-07 Score=84.77 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=43.9
Q ss_pred hCCCeEEEeCCCC----CCC-----HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH-------HHHhhcCeEEEEeCC
Q psy2520 146 TDPALLLCDEPTT----GLD-----SFSASKLIRMMRELTSQRKKTVLCTIHQPSS-------ELIDMFDKIILLADS 207 (290)
Q Consensus 146 ~~p~llllDEPts----gLD-----~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~-------~~~~~~d~v~~l~~G 207 (290)
.+|+++++|+-.+ .+| ....++++..|.+++++.|.|++++.|-..+ .+..++|.++.++..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 4899999999633 333 2334556677777777789999999885321 257789999998754
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.2e-07 Score=68.91 Aligned_cols=48 Identities=31% Similarity=0.461 Sum_probs=37.2
Q ss_pred CCCCChHHH-HHHHHHHHHH------h------CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q psy2520 127 KVVLSGGER-KRLSFATELL------T------DPALLLCDEPTTGLDSFSASKLIRMMRE 174 (290)
Q Consensus 127 ~~~LSgGqr-qRv~ia~aL~------~------~p~llllDEPtsgLD~~~~~~i~~~l~~ 174 (290)
.+.+||||| ..+++|.+++ . .|++++|||||++||+..+..++++|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 345999999 5555544442 2 3799999999999999999999999874
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.9e-07 Score=78.95 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH-HHHhhcCeEEEEeCC
Q psy2520 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS-ELIDMFDKIILLADS 207 (290)
Q Consensus 132 gGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~-~~~~~~d~v~~l~~G 207 (290)
.|+-+|..||.++..+|+.+..+| +.+||.....+.+.+.+. .+.|.+||+.+|.+.. .+..+||.+++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~-~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQF-QSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHh-hcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 478899999999999999988887 789999999999999887 4446799999998631 256789999888764
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.3e-08 Score=83.59 Aligned_cols=29 Identities=31% Similarity=0.554 Sum_probs=26.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999998764
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.5e-07 Score=90.19 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=70.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCC-----CCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPDDC-----IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL 87 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~-----~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~ 87 (290)
.+.++|+||||+|||||++++.+..++.. ...+-|.++|..+.... ....+-.|+.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~-----------------~~i~~~llg~-- 235 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDP-----------------REVTNPLLGS-- 235 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCH-----------------HHHhHHhcCC--
Confidence 45799999999999999999998875420 01233555554321000 0001111110
Q ss_pred cCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHH
Q psy2520 88 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASK 167 (290)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~ 167 (290)
. . ......+.+.++.+|+.+..... +..+||| +|+||| +..||+..+..
T Consensus 236 -~----~-~~~~~~a~~~l~~~gl~~~~~g~--------v~~asgG----------------vL~LDE-i~~Ld~~~Q~~ 284 (615)
T TIGR02903 236 -V----H-DPIYQGARRDLAETGVPEPKTGL--------VTDAHGG----------------VLFIDE-IGELDPLLQNK 284 (615)
T ss_pred -c----c-HHHHHHHHHHHHHcCCCchhcCc--------hhhcCCC----------------eEEEec-cccCCHHHHHH
Confidence 0 0 00011234457778887776666 4458998 999999 79999999999
Q ss_pred HHHHHHH
Q psy2520 168 LIRMMRE 174 (290)
Q Consensus 168 i~~~l~~ 174 (290)
+++.|.+
T Consensus 285 Ll~~Le~ 291 (615)
T TIGR02903 285 LLKVLED 291 (615)
T ss_pred HHHHHhh
Confidence 9999975
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-07 Score=84.97 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=50.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEECCEec---CccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL 87 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i~G~~~---~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~ 87 (290)
-.++||.||||||||||+++|.+++. | .+|.|.+-+.+- ....++..+++ |+..+.+.+++.+.+.+...+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~---~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWP---EHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcC---CCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHH
Confidence 36999999999999999999999886 4 257776644442 22233345554 666667778888877775544
Q ss_pred c
Q psy2520 88 K 88 (290)
Q Consensus 88 ~ 88 (290)
+
T Consensus 138 k 138 (290)
T TIGR00554 138 K 138 (290)
T ss_pred H
Confidence 3
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.9e-06 Score=77.61 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=64.3
Q ss_pred CCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC-----HHHH----------HHHHHHHHHHHhcCCcEEEEEeCCCcH
Q psy2520 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLD-----SFSA----------SKLIRMMRELTSQRKKTVLCTIHQPSS 192 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD-----~~~~----------~~i~~~l~~l~~~~g~tii~~tH~~~~ 192 (290)
.+=||-.-|=.+|..||-...++||+||=|++-- ...+ .-+.+.++.+..+.|.+.|+|+--. .
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggs-g 399 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGS-G 399 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccc-h
Confidence 3479999999999999999999999999999643 2223 2346667777666798888887664 5
Q ss_pred HHHhhcCeEEEEeCCeE
Q psy2520 193 ELIDMFDKIILLADSRT 209 (290)
Q Consensus 193 ~~~~~~d~v~~l~~G~i 209 (290)
..+..+|+|++|++=+.
T Consensus 400 dy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 400 DYFDVADRVIMMDEYRP 416 (448)
T ss_pred hhHhhCCEEEEecCccc
Confidence 78899999999998653
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-07 Score=80.55 Aligned_cols=56 Identities=29% Similarity=0.340 Sum_probs=42.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 68 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~ 68 (290)
.+|.+++|+|+||||||||.+.|++.+.+. -.|.+.++|.++...+...++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~--~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHEL--GVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhC--CCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 578999999999999999999999987653 14789999987654333345665554
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.6e-07 Score=85.84 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=53.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----------cccccEEEEccCCCCCCCCCHHHH
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----------KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----------~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.+|++++++|||||||||++..|++.+.+. .++|.+.+.+... ..+..+.+++|.....|..+++++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 578999999999999999999999998763 5799988877632 124568888886554554556666
Q ss_pred HHHH
Q psy2520 81 LYFM 84 (290)
Q Consensus 81 l~~~ 84 (290)
+...
T Consensus 189 l~~~ 192 (318)
T PRK10416 189 IQAA 192 (318)
T ss_pred HHHH
Confidence 5543
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.1e-07 Score=85.22 Aligned_cols=71 Identities=24% Similarity=0.255 Sum_probs=54.2
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.+.+|++++|+|+||+|||||++.|+|...+. .|+|.+++..-.. ..++.+++++|+..+++. ....++.+
T Consensus 191 ~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~l 262 (356)
T PRK01889 191 WLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQL 262 (356)
T ss_pred HhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhcc
Confidence 45689999999999999999999999998874 7999998754322 235679999998776653 34444443
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.6e-07 Score=74.22 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=32.9
Q ss_pred CCCChHHHHHHHHHHHHH-----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2520 128 VVLSGGERKRLSFATELL-----TDPALLLCDEPTTGLDSFSASKLIRMMREL 175 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~-----~~p~llllDEPtsgLD~~~~~~i~~~l~~l 175 (290)
..+|++++++........ ..|+++ |++++|.....++++.|.++
T Consensus 121 D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 121 DKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 347889888876665532 345554 99999999999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-06 Score=74.57 Aligned_cols=27 Identities=48% Similarity=0.740 Sum_probs=24.6
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
|++++|+||||||||||++.|++.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 678999999999999999999998754
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-05 Score=69.77 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=35.1
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
.+..++|+||+..|=++.....+.. +++.+.+..+..+|++||.. ++.++.
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~--~l~~~~ 172 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH--ELAELL 172 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G--GGGGHH
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc--hhHHHh
Confidence 3567899999999999998877654 44555332478899999986 344443
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-05 Score=81.87 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=47.9
Q ss_pred HhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHH--------HHhhcCeEEEEeCC
Q psy2520 145 LTDPALLLCDEPTTGLD-SFSASKLIRMMRELTSQRKKTVLCTIHQPSSE--------LIDMFDKIILLADS 207 (290)
Q Consensus 145 ~~~p~llllDEPtsgLD-~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~--------~~~~~d~v~~l~~G 207 (290)
-.+|+++++|||+.+|| +..+..+.+.++.++ +.|.+++++||++.+. +.+.|+..++|.+.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~ 703 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLR-KKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNE 703 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCc
Confidence 35899999999999999 788999999999984 5688999999997421 33345555555554
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.8e-07 Score=86.31 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=51.4
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQH 68 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~ 68 (290)
++ +.+.+||.++|+|+||+|||||+++|++...++...-|.|-.+|+++.. ...+++++|+..
T Consensus 144 ~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 144 GL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred ee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 45 8999999999999999999999999999988753234899999998753 123678888874
|
|
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.3e-07 Score=83.55 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=33.3
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCC-CC--CCCccEE-EECCEe
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLP-DD--CIIDGDI-RVNGKP 53 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~-~~--~~~~G~I-~i~G~~ 53 (290)
+=+.+|+++.|.||||||||||+..++.... |. ....|.+ +|+++.
T Consensus 113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 113 GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 4478999999999999999999998875433 21 0024665 777654
|
|
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.4e-07 Score=86.80 Aligned_cols=66 Identities=23% Similarity=0.250 Sum_probs=53.0
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc-------ccccEEEEccCCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-------FRSACGFMYQHDL 70 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~-------~~~~ig~v~Q~~~ 70 (290)
|.-+.+.+|++++|+|+||+|||||+++|+|+.+++....|.|.+.|+++... -....++|+|+..
T Consensus 167 D~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 167 NALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred eecccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 44589999999999999999999999999999888533358999999988541 1245788888643
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.8e-06 Score=86.23 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=46.8
Q ss_pred HHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeC---------------CCcHHHHhhcCeEEEEeCCe
Q psy2520 144 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH---------------QPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 144 L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH---------------~~~~~~~~~~d~v~~l~~G~ 208 (290)
|..+|+++++||.-..-| ++++..++ ..|..++.+.| ++ ..+...+|+++++.+|+
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~-~ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~G~ 391 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMR-LAGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIEDGE 391 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHH-HcCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeCCE
Confidence 678999999999985322 44444442 23677888999 75 36778999999999999
Q ss_pred E--EEEcCH
Q psy2520 209 T--AFIGSK 215 (290)
Q Consensus 209 i--~~~g~~ 215 (290)
+ ++.++.
T Consensus 392 I~~v~~~~~ 400 (602)
T PRK13764 392 VSKVYDLEF 400 (602)
T ss_pred EEEEEeeee
Confidence 9 666653
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-06 Score=83.05 Aligned_cols=59 Identities=31% Similarity=0.370 Sum_probs=39.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHD 69 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~ 69 (290)
.+|.+++|+||+||||||+|++|++.+.+.....+.|.....++.- ..+...+++.|..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~ 193 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSE 193 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeee
Confidence 4788999999999999999999999874321012356555544432 1233457788864
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.9e-07 Score=77.27 Aligned_cols=28 Identities=54% Similarity=0.760 Sum_probs=26.2
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 290 | ||||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-13 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-13 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 7e-13 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-12 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 6e-12 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 6e-12 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 6e-12 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-12 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 7e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 7e-12 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 9e-12 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-11 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-11 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-11 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-11 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 6e-11 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 8e-11 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-10 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-10 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-10 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-10 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-10 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 4e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 9e-10 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-09 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 4e-09 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 4e-09 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-09 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 5e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 5e-09 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 5e-09 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 7e-09 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 7e-09 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 8e-09 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-08 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-08 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 9e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-07 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 2e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 3e-07 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 6e-07 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-07 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 8e-07 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 9e-07 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 9e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-06 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 1e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-06 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 3e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 6e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 6e-06 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-05 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-05 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-05 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-05 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-05 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-05 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-05 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 3e-05 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-05 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-05 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 8e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-04 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 1e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-04 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-04 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 2e-04 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-04 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-04 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 4e-04 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 4e-04 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 5e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 6e-04 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-04 |
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 107 bits (271), Expect = 1e-28
Identities = 42/192 (21%), Positives = 83/192 (43%), Gaps = 23/192 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G +V G +G GK+TLL +S L G+I NG P+ K + F+ + +
Sbjct: 35 GNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT-KVKGKIFFLPEEIIVP 90
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
++V ++L +A L + K I L + +++ ++G LS
Sbjct: 91 RKISVEDYLKAVASLYGVKVNKNE-----IMDALESVEVLD-LKKKLGE--------LSQ 136
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G +R+ A+ LL + + + D+P +D S K+++ + E+ ++ ++ +
Sbjct: 137 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS-----R 191
Query: 193 ELIDMFDKIILL 204
E + D L
Sbjct: 192 EELSYCDVNENL 203
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 6e-27
Identities = 54/220 (24%), Positives = 90/220 (40%), Gaps = 26/220 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF-------RSACGFM 65
G + G +GAGK+TLL L+ P G + + GK GK R GF+
Sbjct: 47 GDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMP-GKVGYSAETVRQHIGFV 102
Query: 66 YQ--HDLFSPSLTVYEHLY--FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
+ F V + + + + + + R + LL +G+ IG
Sbjct: 103 SHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR-NEAHQLLKLVGMSAKAQQYIGY 161
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LS GE++R+ A L+ P +L+ DEP GLD + L+ ++ L+
Sbjct: 162 --------LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPT 213
Query: 182 -TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
++ H E+ F KI+LL D ++ G+ + L
Sbjct: 214 LAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDILT 252
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-26
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE---GKFRSACGFMYQHD 69
G + ++G +GAGK+T L +S + G + V GK V + R ++ +
Sbjct: 41 GEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEA 97
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
++ E+L F+A + + ++ GL R+ +
Sbjct: 98 GAYRNMQGIEYLRFVAGF---YASSSSEIEEMVERATEIAGLGEKIKDRVST-------- 146
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
S G ++L A L+ +P L + DEPT+GLD +A ++ +++++ SQ T+L + H
Sbjct: 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA-SQEGLTILVSSH 204
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 4e-23
Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 28/207 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH-DLF 71
G V I+G +G+GK+TLL A+S LP G+I +NG V K R+ + + +
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLLPYS----GNIFINGMEVR-KIRNYIRYSTNLPEAY 84
Query: 72 SPSLTVYEHLYF-MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
+TV + +Y L LDR L +L L L R + + L
Sbjct: 85 EIGVTVNDIVYLYEELKGLDRD--------LFLEMLKALKLGEEILRR----KLYK---L 129
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
S G+ + + L + P ++ DEP +D+ + R ++E K + H+
Sbjct: 130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY----GKEGILVTHE- 184
Query: 191 SSELIDMFDKIILL-ADSRTAFIGSKD 216
L + +R S
Sbjct: 185 LDMLNLYKEYKAYFLVGNRLQGPISVS 211
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 1e-21
Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 35/226 (15%)
Query: 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA---- 61
L+G +G ++ ++G +GAGKSTLLA ++ G I+ G+P+E +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALH 74
Query: 62 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 121
++ Q + V+ L L + R L+N + L L +
Sbjct: 75 RAYLSQQQTPPFATPVWH------YLTLHQH--DKTRTELLNDVAGALALDDKLGRSTNQ 126
Query: 122 SSITQKVVLSGGERKRLSFA-------TELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174
LSGGE +R+ A + LLL DEP LD S L +++
Sbjct: 127 --------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 175 LTSQRKKTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGSKDAAL 219
L+ Q+ ++ + H + + LL + G ++ L
Sbjct: 179 LS-QQGLAIVMSSHDLN--HTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 4e-21
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 27/169 (15%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
+ I+G +G GK+T + L+ +G + + + Q+
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDLTVA---------YKPQYIKAEYEG 432
Query: 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 135
TVYE L + KL+ LL LG+++ + LSGGE
Sbjct: 433 TVYELLSKIDSSKLNSN-------FYKTELLKPLGIIDLYDRNVED--------LSGGEL 477
Query: 136 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+R++ A LL D + L DEP+ LD + R +R L + +KT L
Sbjct: 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 8e-18
Identities = 37/183 (20%), Positives = 70/183 (38%), Gaps = 28/183 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI---IDGDIRVNGKP------VEGKFRSACG 63
G +V I+G +G GK+T + L+ +L + D + + ++
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 176
Query: 64 FM-YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGS 121
+ + + +L ++V + ++ L +E +
Sbjct: 177 RPVVKPQYVD----LLPKAVKGKVRELLKKVDEVGKFEEVVKELELE---------NVLD 223
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
+ Q LSGGE +R++ A LL DEP++ LD K+ R++R L + K
Sbjct: 224 RELHQ---LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL-ANEGK 279
Query: 182 TVL 184
VL
Sbjct: 280 AVL 282
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 87.9 bits (219), Expect = 5e-21
Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 41/210 (19%)
Query: 13 GTLVAIMGASGAGKSTL---LAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRS-A 61
G V+I+GASG+GKSTL L L P + G + + GK V+ R+
Sbjct: 30 GEFVSIIGASGSGKSTLLYILGLLDA--PTE----GKVFLEGKEVDYTNEKELSLLRNRK 83
Query: 62 CGFMYQ-HDLFSPSLTVYEH----LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH 116
GF++Q H L P LT E+ + M K + + + LL ELGL +
Sbjct: 84 LGFVFQFHYLI-PELTALENVIVPMLKMGKPKKEAKERGEY-------LLSELGLGDKLS 135
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 176
+ LSGGE++R++ A L +P LL DEPT LDS + +++ + ++
Sbjct: 136 RKPYE--------LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 177 SQRKKTVLCTIHQPSSELIDMFDKIILLAD 206
V+ T H+ EL ++ + + + D
Sbjct: 188 EGGTSIVMVT-HER--ELAELTHRTLEMKD 214
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 8e-21
Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 25/173 (14%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G ++ I+G +G GK+T L + D +G + + + + Q
Sbjct: 293 EGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL--------SYKPQRIFP 341
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
+ TV + L+ + + L L + + LS
Sbjct: 342 NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND--------LS 387
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
GGE ++L A L + L + D+P++ LD + + ++ +T +RK
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 7e-19
Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 23/185 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
T++ ++G +G GK+T+L L+ + + D + +V V +FR + Y +L+S
Sbjct: 25 NTILGVLGKNGVGKTTVLKILAGEIIPN-FGDPNSKVGKDEVLKRFRGKEIYNYFKELYS 83
Query: 73 PSLTVYEH---------LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 123
L + + ++ ++ + + LL L N
Sbjct: 84 NELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNK--------D 135
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGG +RL A LL + + + D+P++ LD + + +REL + K V
Sbjct: 136 ANI---LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL--LKNKYV 190
Query: 184 LCTIH 188
+ H
Sbjct: 191 IVVDH 195
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 2e-20
Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 13 GTLVAIMGASGAGKSTL---LAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSAC 62
G V+IMG SG+GKST+ + L + P + G++ ++ K R
Sbjct: 31 GEFVSIMGPSGSGKSTMLNIIGCLDK--PTE----GEVYIDNIKTNDLDDDELTKIRRDK 84
Query: 63 -GFMYQ--HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
GF++Q + + P LT E++ + K + +R L L R
Sbjct: 85 IGFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE----RF 138
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
+ Q LSGG+++R++ A L +P ++L D+PT LDS + K+++++++L +
Sbjct: 139 ANHKPNQ---LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED 195
Query: 180 KKTVLCTIHQPSSELIDMFDKIILLAD 206
KTV+ H + ++II L D
Sbjct: 196 GKTVVVVTHDI--NVARFGERIIYLKD 220
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 5e-19
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 26/203 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G ++A++G +G GKSTLL L I G I V GF+ Q
Sbjct: 30 KGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEVYQS---------IGFVPQFFSS 77
Query: 72 SPSLTVYEHLYFM---ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
+ +V + + M + + K++ + L L L + S
Sbjct: 78 PFAYSVLD-IVLMGRSTHINTFAKPKSHDY-QVAMQALDYLNLTHLAKREFTS------- 128
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
LSGG+R+ + A + ++ L+L DEPT+ LD + ++ ++ +L + TV+ T H
Sbjct: 129 -LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
Query: 189 QPSSELIDMFDKIILLADSRTAF 211
QP+ + + +K +LL F
Sbjct: 188 QPNQVV-AIANKTLLLNKQNFKF 209
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 6e-19
Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 40/219 (18%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVEGK------FRSACGF 64
G + AI+G +G GKSTL + L P G I + KP++ R + G
Sbjct: 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSS----GRILFDNKPIDYSRKGIMKLRESIGI 88
Query: 65 MYQ---HDLFSPSLTVYEHLYF------MALLKLDRRVKAYQRIALINSLLIELGLMNSQ 115
++Q + LFS +VY+ + F + ++ +RV L G+
Sbjct: 89 VFQDPDNQLFSA--SVYQDVSFGAVNMKLPEDEIRKRVDNA---------LKRTGI---- 133
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+ LS G++KR++ A L+ +P +L+ DEPT GLD S++++++ E+
Sbjct: 134 -EHLKDKPTHC---LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189
Query: 176 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
+ T++ H + D + ++ + R G+
Sbjct: 190 QKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGN 227
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 2e-18
Identities = 41/213 (19%), Positives = 75/213 (35%), Gaps = 28/213 (13%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDD-CIIDGDIRV-------NGKPVEGKFRSACG- 63
G ++ ++G +G GKST L L+ + + D G ++ F
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 64 -----FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
Q+ P LLKL + + + L L
Sbjct: 163 DIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQL-----EN 213
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+ I + LSGGE +R + + + + + DEP++ LD +++R L
Sbjct: 214 VLKRDIEK---LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL-A 269
Query: 179 RKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211
K V+C H S L + D + ++ + +
Sbjct: 270 PTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 2e-18
Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 29/174 (16%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
++ +MG +G GK+TL+ L+ L PD+ + V+ KP Q
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKP-------------QKIA 423
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
TV + + + + ++ L + + + L
Sbjct: 424 PKFPGTVRQLFF-------KKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQH--------L 468
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
SGGE +R++ L + L DEP+ LDS +++R KKT
Sbjct: 469 SGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 5e-18
Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 27/173 (15%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G ++ I+G +G GK+T + L+ +G I + + Q+
Sbjct: 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA---------YKPQYIKA 358
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
TVYE L LL LG+++ + LS
Sbjct: 359 DYEGTVYELL-------SKIDASKLNSNFYKTELLKPLGIIDLYDREVNE--------LS 403
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
GGE +R++ A LL D + L DEP+ LD + R +R L + +KT L
Sbjct: 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-14
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 30/185 (16%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPD---DCIIDGDIRVNGKPV------EGKFRSAC 62
G +V I+G +G GKST + L+ +L D + K ++
Sbjct: 46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105
Query: 63 GFM-YQHDLFS--PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 119
+ P + + + +++ + + ++L
Sbjct: 106 IRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVL------------- 152
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 179
I LSGGE +R++ A LL + DEP++ LD R +R L S+
Sbjct: 153 -EREIQH---LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL-SEE 207
Query: 180 KKTVL 184
K+VL
Sbjct: 208 GKSVL 212
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 3e-17
Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 31/225 (13%)
Query: 13 GTLVAIMGASGAGKSTL---LAALSQRLPDDCIIDGDIRVNGKPVEGK-FRSACGFMYQ- 67
G + + G +G+GKSTL +A L P GD+ +G+ +G R G +Q
Sbjct: 33 GECLLVAGNTGSGKSTLLQIVAGL--IEPTS----GDVLYDGERKKGYEIRRNIGIAFQY 86
Query: 68 --HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
F+ V++ + F A+ + + +GL S
Sbjct: 87 PEDQFFAE--RVFDEVAF-AVKNFYPDRDPVPLV---KKAMEFVGL--------DFDSFK 132
Query: 126 QKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+V LSGGE++R++ A+ ++ +P +L+ DEP GLD + L+R++ + KTV
Sbjct: 133 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTV 191
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYP 228
+ H +I+ D++++L + F G++ L + + +
Sbjct: 192 ILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFT 235
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 4e-14
Identities = 34/151 (22%), Positives = 53/151 (35%), Gaps = 33/151 (21%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
I G +G GKSTL+ A++ D + R ++ +
Sbjct: 461 ARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT-------------VYVEHDIDGT 507
Query: 73 PS-LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQKVVL 130
S +V + ++ I LIE G I + L
Sbjct: 508 HSDTSVLDFVF----------ESGVGTKEAIKDKLIEFGFTDEMIAMPISA--------L 549
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLD 161
SGG + +L+ A +L + +LL DEPT LD
Sbjct: 550 SGGWKMKLALARAVLRNADILLLDEPTNHLD 580
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-08
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 102 INSLLIELGLM--NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159
I LGL H+RI LSGG++ +L A P L++ DEPT
Sbjct: 880 IEEHCSMLGLDPEIVSHSRIRG--------LSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADSR 208
LD S L + ++E + V+ H S+E + +++ + D R
Sbjct: 932 LDRDSLGALSKALKEF----EGGVIIITH--SAEFTKNLTEEVWAVKDGR 975
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 1e-13
Identities = 59/216 (27%), Positives = 110/216 (50%), Gaps = 26/216 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G +A++G SGAGKST+L L R D I G IR++G+ + RS G + Q
Sbjct: 80 GQTLALVGPSGAGKSTILRLLF-RFYD--ISSGCIRIDGQDISQVTQASLRSHIGVVPQ- 135
Query: 69 D--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSI 124
D LF+ T+ +++ + + + V+A + A I+ ++ G T++G
Sbjct: 136 DTVLFND--TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGY----RTQVGE--- 186
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
+ + LSGGE++R++ A +L P ++L DE T+ LD+ + + + ++ + R T +
Sbjct: 187 -RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR--TTI 243
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ + D+I+++ D G +A L+
Sbjct: 244 VVAHRLST--VVNADQILVIKDGCIVERGRHEALLS 277
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-13
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 35/191 (18%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL------PDDCIIDGDIRVNGKPVEG-------KFR 59
G + ++GASGAGKSTL+ R P + G + V+G+ + K R
Sbjct: 54 GQIYGVIGASGAGKSTLI-----RCVNLLERPTE----GSVLVDGQELTTLSESELTKAR 104
Query: 60 SACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 118
G ++QH +L S S TV+ ++ L+LD K + + LL +GL + +
Sbjct: 105 RQIGMIFQHFNLLS-SRTVFGNVAL--PLELDNTPKD-EVKRRVTELLSLVGLGDKHDSY 160
Query: 119 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 178
+ LSGG+++R++ A L ++P +LLCD+ T+ LD + ++ +++++ +
Sbjct: 161 PSN--------LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 179 RKKTVLCTIHQ 189
T+L H+
Sbjct: 213 LGLTILLITHE 223
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 6e-13
Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 27/217 (12%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
SGT A++G +G+GKST+ A L R D +GDI++ GK V RS G + Q
Sbjct: 45 SGTTCALVGHTGSGKSTI-AKLLYRFYD---AEGDIKIGGKNVNKYNRNSIRSIIGIVPQ 100
Query: 68 HD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSS 123
D LF+ T+ ++ + L D V + A + + L T +G+
Sbjct: 101 -DTILFNE--TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKW----DTIVGNKG 153
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
+ LSGGER+R++ A LL DP +++ DE T+ LDS + + + +L R T+
Sbjct: 154 ----MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNR--TL 207
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
+ H+ S+ I + IILL + G+ L
Sbjct: 208 IIIAHRLST--ISSAESIILLNKGKIVEKGTHKDLLK 242
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 8e-13
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 23/157 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------KFRSACGFMY 66
G +V ++G SG+GKST L L+ L D +G+I ++G ++ K R G ++
Sbjct: 50 GEVVVVIGPSGSGKSTFLRCLN-LLED--FDEGEIIIDGINLKAKDTNLNKVREEVGMVF 106
Query: 67 QH-DLFSPSLTVYEHLYFMALLKLDRRVKAY-QRIALINSLLIELGLMNSQHTRIGSSSI 124
Q +LF P +TV ++ +A +K+ + + + A+ LL ++GL + H S
Sbjct: 107 QRFNLF-PHMTVLNNI-TLAPMKVRKWPREKAEAKAM--ELLDKVGLKDKAHAYPDS--- 159
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LSGG+ +R++ A L +P ++L DEPT+ LD
Sbjct: 160 -----LSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 3e-12
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 21/161 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
+++A G SG GKST+ +L +R G+I ++G+P++ +RS GF+ Q
Sbjct: 27 PNSIIAFAGPSGGGKSTI-FSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQ 83
Query: 68 HD-LFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSS 123
+ + T+ E+L Y + D + +A S + + L +T +G
Sbjct: 84 DSAIMAG--TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL----NTEVGERG 137
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
+ +SGG+R+RL+ A L +P +L+ DE T LDS S
Sbjct: 138 VK----ISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 6e-12
Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 28/214 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
SG VA++G SG GKST L QRL D +DG + ++G+ + R G + Q
Sbjct: 415 SGQTVALVGNSGCGKSTT-VQLMQRLYD--PLDGMVSIDGQDIRTINVRYLREIIGVVSQ 471
Query: 68 HDLFSPSL---TVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSS 122
P L T+ E++ + ++ + A +++L T +G
Sbjct: 472 E----PVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF----DTLVGER 523
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGG+++R++ A L+ +P +LL DE T+ LD+ S + + + + R T
Sbjct: 524 GAQ----LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGR--T 577
Query: 183 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
+ H+ S+ + D I G+ D
Sbjct: 578 TIVIAHRLST--VRNADVIAGFDGGVIVEQGNHD 609
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 28/165 (16%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
G +A++G+SG GKST++ L +R D + G + ++GK ++ R+ G + Q
Sbjct: 1058 KGQTLALVGSSGCGKSTVVQ-LLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114
Query: 68 H-DLFSPSLTVYEHLYFMALLKLDRRV-----KAYQRIALINSLLIEL--GLMNSQHTRI 119
LF ++ E++ A R V + A I+ + L +TR+
Sbjct: 1115 EPILFD--CSIAENI---AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKY----NTRV 1165
Query: 120 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
G TQ LSGG+++R++ A L+ P +LL DE T+ LD+ S
Sbjct: 1166 GDKG-TQ---LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 31/180 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G VA++G SG+GKST+ A+L R D I +G I ++G + R+ + Q+
Sbjct: 369 GKTVALVGRSGSGKSTI-ASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 69 D-LFSPSLTVYEHLYFMALLKLDR-RVKAYQRIA----LINSLLIELGLMNSQHTRIGSS 122
LF+ TV ++ + + R +++ R+A IN + + GL T IG +
Sbjct: 426 VHLFND--TVANNIAYARTEEYSREQIEEAARMAYAMDFINKM--DNGL----DTIIGEN 477
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-----RMMRELTS 177
+ LSGG+R+R++ A LL D +L+ DE T+ LD+ S + I + + TS
Sbjct: 478 GVL----LSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTS 532
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 2e-11
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 27/157 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMY--- 66
G +V ++GA+GAGK+T L+A++ + G I NG+ + K + G
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHVINRMGIALVPE 88
Query: 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSL---LIELGLMNSQHTRIGSSS 123
+F P LTVYE+L A + D+ + + I SL L E R+
Sbjct: 89 GRRIF-PELTVYENLMMGAYNRKDKEGIK-RDLEWIFSLFPRLKE---------RLKQLG 137
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160
T LSGGE++ L+ L++ P LL+ DEP+ GL
Sbjct: 138 GT----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGL 170
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-11
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 31/172 (18%)
Query: 12 SGTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGK--FRSACGFMY 66
G +V ++G SG+GK+T+L A L + P GD+ + GK V + G ++
Sbjct: 40 EGEMVGLLGPSGSGKTTILRLIAGLER--PTK----GDVWIGGKRVTDLPPQKRNVGLVF 93
Query: 67 QH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSL-LIELGLMNSQHTRIGSSSI 124
Q+ LF +TVY+++ F L+ R K + L + L +
Sbjct: 94 QNYALF-QHMTVYDNVSFG--LREKRVPKDEMDARVRELLRFMRLESY-------ANRFP 143
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR-EL 175
+ LSGG+++R++ A L P +LL DEP +D +++ R +R +
Sbjct: 144 HE---LSGGQQQRVALARALAPRPQVLLFDEPFAAID----TQIRRELRTFV 188
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 3e-11
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 31/180 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G VA++G SG+GKST+ A L R D + G I ++G V R + Q+
Sbjct: 369 GKTVALVGRSGSGKSTI-ANLFTRFYD--VDSGSICLDGHDVRDYKLTNLRRHFALVSQN 425
Query: 69 D-LFSPSLTVYEHLYFMALLKLDR-RVKAYQRIA----LINSLLIELGLMNSQHTRIGSS 122
LF+ T+ ++ + A + R +++ R A I ++ GL T IG +
Sbjct: 426 VHLFND--TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENM--PQGL----DTVIGEN 477
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-----RMMRELTS 177
+ LSGG+R+R++ A LL D +L+ DE T+ LD+ S + I + + T
Sbjct: 478 GTS----LSGGQRQRVAIARALLRDAPVLILDEATSALDTES-ERAIQAALDELQKNKTV 532
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 4e-11
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 37/213 (17%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGK--FRSACGFMYQ 67
++G +GAGKS L A + + PD G++R+NG + R GF+ Q
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVK--PDR----GEVRLNGADITPLPPERRGIGFVPQ 77
Query: 68 H-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 126
LF P L+VY ++ + L R V+ +R + + +LG+ + +
Sbjct: 78 DYALF-PHLSVYRNIAY-GL----RNVERVERDRRVREMAEKLGIAHLLDRKPAR----- 126
Query: 127 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMRELTSQRKKTVLC 185
LSGGER+R++ A L+ P LLL DEP + +D K +M EL +++ +
Sbjct: 127 ---LSGGERQRVALARALVIQPRLLLLDEPLSAVD----LKTKGVLMEELRFVQREFDVP 179
Query: 186 TIH----QPSSELIDMFDKIILLADSRTAFIGS 214
+H E + D++ ++ + R G
Sbjct: 180 ILHVTHDL--IEAAMLADEVAVMLNGRIVEKGK 210
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 6e-11
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 43/173 (24%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI-----ID-GDIRVNGKPVEG---------- 56
G +++I+G+SG+GKST L R CI G I VNG+ +
Sbjct: 32 GDVISIIGSSGSGKSTFL-----R----CINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82
Query: 57 -------KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE 108
R+ ++QH +L+ +TV E++ A +++ K L +
Sbjct: 83 ADKNQLRLLRTRLTMVFQHFNLW-SHMTVLENV-MEAPIQVLGLSKH-DARERALKYLAK 139
Query: 109 LGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
+G+ + LSGG+++R+S A L +P +LL DEPT+ LD
Sbjct: 140 VGIDERAQGKYPVH-------LSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 9e-11
Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 30/219 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
G ++ I+G SG+GKSTL L QR +G + ++G + R G + Q
Sbjct: 34 QGEVIGIVGRSGSGKSTL-TKLIQRFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQ 90
Query: 68 HD-LFSPSLTVYEHLYFMALLKLD---RRVKAYQRIALINSLLIEL--GLMNSQHTRIGS 121
+ L + ++ +++ +L +V ++A + + EL G +T +G
Sbjct: 91 DNVLLNR--SIIDNI---SLANPGMSVEKVIYAAKLAGAHDFISELREGY----NTIVGE 141
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ R
Sbjct: 142 ----QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR-- 195
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
TV+ H+ S+ + D+II++ + G L+
Sbjct: 196 TVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLS 232
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 1e-10
Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 39/193 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK---FRSACGFM--YQ 67
G + I+G +G+GKSTL+ ++ L D +G + K + K G + +Q
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQ 89
Query: 68 H-DLFSPSLTVYE-----------HLYFMALLKLDRRV-KAYQRIALINSLLIELGLMNS 114
+TV E K + A +L L L +
Sbjct: 90 TPQPLK-EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAF--KILEFLKLSHL 146
Query: 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL---DSFSASKLIRM 171
+ G LSGG+ K + L+T+P +++ DEP G+ + +
Sbjct: 147 YDRKAGE--------LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 172 MRELTSQRKKTVL 184
++ + T L
Sbjct: 199 LKA----KGITFL 207
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 5e-10
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 33/174 (18%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSA------CG 63
G ++ I+GASG GK+TLL A Q PD G+I ++GK + K + G
Sbjct: 30 GEILFIIGASGCGKTTLLRCLAGFEQ--PDS----GEISLSGKTIFSKNTNLPVRERRLG 83
Query: 64 FMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 122
++ Q LF P LTVY ++ + L + A Q I ++L G+ + +
Sbjct: 84 YLVQEGVLF-PHLTVYRNIAYG--LGNGKGRTA-QERQRIEAMLELTGI-----SELAGR 134
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMREL 175
+ LSGG+++R + A L DP L+L DEP + LD +L ++ ++
Sbjct: 135 YPHE---LSGGQQQRAALARALAPDPELILLDEPFSALD----EQLRRQIREDM 181
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 5e-10
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 28/161 (17%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G VA +G SG GKSTL+ + R D + G I ++G ++ G R+ G + Q
Sbjct: 367 GETVAFVGMSGGGKSTLINLIP-RFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQ- 422
Query: 69 D--LFSPSLTVYEHLYFMALLKLD---RRVKAYQRIALINSLLIEL--GLMNSQHTRIGS 121
D LFS TV E++ L + V ++A + ++ L G T +G
Sbjct: 423 DNILFSD--TVKENI---LLGRPTATDEEVVEAAKMANAHDFIMNLPQGY----DTEVGE 473
Query: 122 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162
+ LSGG+++RLS A L +P +L+ DE T+ LD
Sbjct: 474 RGVK----LSGGQKQRLSIARIFLNNPPILILDEATSALDL 510
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 7e-10
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 45/182 (24%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL------PDDCIIDGDIRVNGKPVEGK--FRSACGF 64
G I+G +GAGK+ L L PD G I ++GK V + F
Sbjct: 26 GEYFVILGPTGAGKTLFL-----ELIAGFHVPDS----GRILLDGKDVTDLSPEKHDIAF 76
Query: 65 MYQH-DLFSPSLTVYEHLYF---MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 120
+YQ+ LF P + V ++L F M +K +RV R +++ +
Sbjct: 77 VYQNYSLF-PHMNVKKNLEFGMRMKKIKDPKRVLDTAR-------DLKIEHL-------L 121
Query: 121 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMRELTS-Q 178
+ LSGGE++R++ A L+T+P +LL DEP + LD + L+
Sbjct: 122 DRNPLT---LSGGEQQRVALARALVTNPKILLLDEPLSALD----PRTQENAREMLSVLH 174
Query: 179 RK 180
+K
Sbjct: 175 KK 176
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 1e-09
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 130 LSGGERKRLSFATEL------LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 183
LSGGER L A L + +LL+ DEPT LD KLI +M + + +
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 184 LCTIHQPSSELIDMFDKIILL 204
L + H EL D D +I +
Sbjct: 309 LVS-HDE--ELKDAADHVIRI 326
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-09
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 42/221 (19%)
Query: 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV----EGKFRSACGFM 65
G+LVA++G +G+GKST L L RL D G + V+ V R +
Sbjct: 366 VKPGSLVAVLGETGSGKST-LMNLIPRLID--PERGRVEVDELDVRTVKLKDLRGHISAV 422
Query: 66 YQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIA----LINSLLIELGLMNSQHTRIG 120
Q LFS T+ E+L + D + +IA I SL G
Sbjct: 423 PQETVLFSG--TIKENLKWGREDATDDEIVEAAKIAQIHDFIISL--PEGY--------- 469
Query: 121 SSSITQKVV-LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA------SKLIRMMR 173
S + + SGG+++RLS A L+ P +L+ D D S+ +++ ++
Sbjct: 470 DSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD------DCTSSVDPITEKRILDGLK 523
Query: 174 ELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
T + T I Q + DKI++L + + A G+
Sbjct: 524 RYT--KGCTTF-IITQKIPTALLA-DKILVLHEGKVAGFGT 560
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 6e-09
Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 16/117 (13%)
Query: 92 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL------L 145
K + + + L + LSGGER L A L
Sbjct: 27 EGKYSEVVVRAEENKVRLFV---VWEGKERPLTF----LSGGERIALGLAFRLAMSLYLA 79
Query: 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 202
+ +LL+ DEPT LD KLI +M + V+ H EL D D +I
Sbjct: 80 GEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAADHVI 133
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 7e-09
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 21/161 (13%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQ 67
G + A++G +G+GKST+ AAL Q L G + ++G+P+ + + Q
Sbjct: 44 PGKVTALVGPNGSGKSTV-AALLQNLYQ--PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ 100
Query: 68 H-DLFSPSLTVYEH-LYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSS 123
LF + E+ Y + + A + + + G T +G +
Sbjct: 101 EPLLFG--RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY----DTEVGETG 154
Query: 124 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164
LSGG+R+ ++ A L+ P LL+ D T+ LD+ +
Sbjct: 155 NQ----LSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 8e-09
Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 41/211 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G L+A+ G++GAGK++LL + L +G I+ +G+ F Q
Sbjct: 34 GQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGR---------ISFCSQ----F 77
Query: 73 P---SLTVYEHLYFMALLKLDRRVKAYQRI----ALINSLLIELGLMNSQHTRIGSSSIT 125
T+ E++ F R Y+ + L + + +G IT
Sbjct: 78 SWIMPGTIKENIIFGVSYDEYR----YRSVIKACQLEEDISK---FAEKDNIVLGEGGIT 130
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMRELTSQRKKTV 183
LSGG+R R+S A + D L L D P LD + ++ + + + KT
Sbjct: 131 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTR 183
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
+ + E + DKI++L + + F G+
Sbjct: 184 ILVTSK--MEHLKKADKILILHEGSSYFYGT 212
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-08
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 42/211 (19%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G L+A+ G++GAGK++LL + L +G I+ +G+ F Q +
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGR---------ISFCSQ----N 107
Query: 73 P---SLTVYEHLYFMALLKLDRRVKAYQRI----ALINSLLIELGLMNSQHTRIGSSSIT 125
T+ E++ + D Y+ + L + + +G IT
Sbjct: 108 SWIMPGTIKENIIG---VSYDE--YRYRSVIKACQLEEDISK---FAEKDNIVLGEGGIT 159
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMRELTSQRKKTV 183
LSGG+R R+S A + D L L D P LD + ++ + + + KT
Sbjct: 160 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTR 212
Query: 184 LCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
+ + E + DKI++L + + F G+
Sbjct: 213 ILVTSK--MEHLKKADKILILHEGSSYFYGT 241
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 8e-08
Identities = 49/213 (23%), Positives = 93/213 (43%), Gaps = 43/213 (20%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G LVA++G G GKS+LL+AL + ++G + + G ++ Q
Sbjct: 31 GALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKGS---------VAYVPQ----Q 74
Query: 73 P---SLTVYEHLYFMALLKLDRRVKAYQRI----ALINSLLIELGLMNSQHTRIGSSSIT 125
+ ++ E++ F L+ Y+ + AL+ L I L + T IG +
Sbjct: 75 AWIQNDSLRENILFGCQLEEPY----YRSVIQACALLPDLEI---LPSGDRTEIGEKGVN 127
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL----IRMMRELTSQRKK 181
LSGG+++R+S A + ++ + L D+P + +D+ + I L + K
Sbjct: 128 ----LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML---KNK 180
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214
T + H + D II+++ + + +GS
Sbjct: 181 TRILVTHS--MSYLPQVDVIIVMSGGKISEMGS 211
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 2e-07
Identities = 58/353 (16%), Positives = 100/353 (28%), Gaps = 99/353 (28%)
Query: 4 LELTGAAL---SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI---RVNGKPVEGK 57
L+L A L V I G G+GK+ + + C +D I +
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL------KN 191
Query: 58 FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI--------------N 103
S + + + + D RI I N
Sbjct: 192 CNSP------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 104 SLLIELGLMNSQH-------------TRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150
LL+ L + N++ TR +T LS +S L ++
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTR--FKQVTD--FLSAATTTHIS-----LDHHSM 296
Query: 151 LLCDEPTTGLDSFSASKLIRM-MRELTSQRKKT---VLCTIHQPSSELIDMFDKII---- 202
L + L K + ++L + T L I + + D
Sbjct: 297 TLTPDEVKSL--L--LKYLDCRPQDLPREVLTTNPRRLSII---AESIRDGLATWDNWKH 349
Query: 203 LLADSRTAFIGSKDAALAFLESQGYPCPYGYN-----PADFLI--KSLAV-----TTND- 249
+ D T I S L E + ++ P I L++ +D
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKM-----FDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 250 -----ELSSRRRLKRICDEFSV----CDFAKEVDLEINYQTH---VGTYDVHK 290
+L +++ E ++ +V LE Y H V Y++ K
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Length = 183 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 7e-06
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
++ I G G GK+ L +RLP + + +
Sbjct: 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEE 39
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 49/180 (27%)
Query: 13 GTLVAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC------- 62
G I+G SGAGK+T + A L G++ + + V +
Sbjct: 31 GERFGILGPSGAGKTTFMRIIAGLDV------PSTGELYFDDRLVASNGKLIVPPEDRKI 84
Query: 63 GFMYQ-HDLFSPSLTVYEHLYFMALLKL--------DRRVKAYQRIALINSLLIELGLMN 113
G ++Q L+ P+LT +E++ F L +RV+ +I I+ +L
Sbjct: 85 GMVFQTWALY-PNLTAFENIAFP--LTNMKMSKEEIRKRVEEVAKILDIHHVL------- 134
Query: 114 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
LSG +++R++ A L+ DP+LLL DEP + LD +++ R
Sbjct: 135 ---NHFPRE-------LSGAQQQRVALARALVKDPSLLLLDEPFSNLD----ARMRDSAR 180
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-05
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
L I G +G GKST L+ +L + I+GDI
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDI 36
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 7e-05
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 22/157 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----GKFRSACGFMYQH 68
G VA++G +G+GK+T++ L R D + G I V+G + RS+ G + Q
Sbjct: 381 GQKVALVGPTGSGKTTIVNLLM-RFYD--VDRGQILVDGIDIRKIKRSSLRSSIGIVLQ- 436
Query: 69 D--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSI 124
D LFS TV E+L + D +K ++ + + L G T + +
Sbjct: 437 DTILFST--TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGY----ETVLTDNGE 490
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
LS G+R+ L+ L +P +L+ DE T+ +D
Sbjct: 491 D----LSQGQRQLLAITRAFLANPKILILDEATSNVD 523
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 42/202 (20%), Positives = 88/202 (43%), Gaps = 38/202 (18%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH-DL 70
V ++G +G+GKSTLL+A RL + +G+I+++G + ++R A G + Q +
Sbjct: 50 VGLLGRTGSGKSTLLSAFL-RLLN---TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFI 105
Query: 71 FSPSL-------TVYEHLYFMALLKLDRRV-KAYQRIALINSLLIELGLMNSQHTRIGSS 122
FS + + D+ + K + L + + G ++ G
Sbjct: 106 FSGTFRKNLDPNAAHS----------DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCV 155
Query: 123 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LS G ++ + A +L+ +LL DEP+ LD + + R +++ + T
Sbjct: 156 -------LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADC--T 206
Query: 183 VLCTIHQPSSELIDMFDKIILL 204
V+ + + + D+ +++
Sbjct: 207 VILCEARIEA--MLECDQFLVI 226
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDC-IIDGD 46
TL+ + G KST+ A LS+ L II G
Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKEL--KYPIIKGS 33
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK------PVEGKFRSACG-F 64
G + A+MG +GAGKSTL L+ P+ + G+I ++G+ P E R+ G F
Sbjct: 28 KGEVHALMGPNGAGKSTLGKILAGD-PEYTVERGEILLDGENILELSPDE---RARKGLF 83
Query: 65 M-YQHDLFSPSLTVYEHLYFMALLKLDRR---VKAYQRIALINSLLIELGLMNSQHTRIG 120
+ +Q+ + P +T+ F+ L + V + + L L
Sbjct: 84 LAFQYPVEVPGVTI---ANFLRLALQAKLGREVGVAEFWTKVKKALELLDW--------- 131
Query: 121 SSSITQKVV---LSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
S + + SGGE+KR L+ +P + DE +GLD
Sbjct: 132 DESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 1e-04
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSP 73
L+ + G GK+TL AL+ L ++ D + G+ +S
Sbjct: 6 ALIIVTGHPATGKTTLSQALATGLR-LPLLSKDA------FKEVMFDGLGW--SDREWSR 56
Query: 74 SLT--VYEHLYFMALLKLDR 91
+ LY A L
Sbjct: 57 RVGATAIMMLYHTAATILQS 76
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 130 LSGGERKRLSFATEL-------LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182
LSGGE+ ++ + L ++ DEPT LD +KL + R++ S +
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 183 VLCTI-HQPSSELIDMFDKII 202
+ I H EL D+ D II
Sbjct: 341 I---ITHHR--ELEDVADVII 356
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 5e-04
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCI-IDGD 46
L G ++ + G G+GKST+ AL+ + D
Sbjct: 4 TDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 43
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 6e-04
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 34/168 (20%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK------PVEGKFRSACG-F 64
G + AIMG +G+GKSTL A L+ R D + G + GK P + R+ G F
Sbjct: 45 PGEVHAIMGPNGSGKSTLSATLAGR-EDYEVTGGTVEFKGKDLLALSPED---RAGEGIF 100
Query: 65 M-YQHDLFSPSLTVYEHLYFM-----ALLKL--DRRVKAYQRIALINSLLIELGLMNSQH 116
M +Q+ + P ++ +F+ A+ + + L+ + L +
Sbjct: 101 MAFQYPVEIPGVSN---QFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM----- 152
Query: 117 TRIGSSSITQKVV---LSGGERKRLSFATELLTDPALLLCDEPTTGLD 161
+ + V SGGE+KR + +P L + DE +GLD
Sbjct: 153 ----PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 196
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 8e-04
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 54/177 (30%)
Query: 16 VAIMGASGAGKSTLL---AALSQRLPDDCIIDGDIRVNGKPV---EGKFRS-ACGF---- 64
+A++G SG+GKSTLL A + + G I + K V K R+ F
Sbjct: 32 MALLGPSGSGKSTLLYTIAGIYK------PTSGKIYFDEKDVTELPPKDRNVGLVFQNWA 85
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKL--------DRRVKAYQRIALINSLLIELGLMNSQH 116
+Y H +TVY+++ F L+L D++V+ ++ I+ LL
Sbjct: 86 LYPH------MTVYKNIAFP--LELRKAPREEIDKKVREVAKMLHIDKLL---------- 127
Query: 117 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173
R LSGG+++R++ A L+ +P +LL DEP + LD + L +R
Sbjct: 128 NRYPWQ-------LSGGQQQRVAIARALVKEPEVLLLDEPLSNLD----ALLRLEVR 173
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 100.0 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 100.0 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.96 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.96 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.95 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.95 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.94 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.94 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.94 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.94 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.92 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.91 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.91 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.9 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.9 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.9 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.9 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.9 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.89 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.89 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.89 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.88 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.87 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.87 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.87 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.86 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.86 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.86 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.86 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.86 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.85 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.85 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.85 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.84 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.84 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.84 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.83 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.83 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.82 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.81 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.8 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.8 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.8 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.79 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.79 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.78 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.77 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.75 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.74 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.73 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.7 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.7 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.69 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.69 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.68 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.67 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.66 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.66 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.66 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.66 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.65 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.65 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.64 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.63 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.61 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.57 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.57 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.57 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.57 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.54 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.54 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.53 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.52 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.52 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.51 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.5 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.49 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.48 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.43 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.4 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.4 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.36 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.34 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.33 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.31 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.31 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.3 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.25 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.23 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.22 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.2 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.2 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.19 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.19 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.13 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.13 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.12 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.1 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.09 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.0 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.0 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.91 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.89 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.85 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.83 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.71 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.7 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.67 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.65 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.62 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.6 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.6 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.59 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.59 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.58 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.56 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.55 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.53 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.38 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.37 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.36 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.35 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.33 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.32 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.31 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.29 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.27 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.27 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.24 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.24 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.23 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.21 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.2 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.17 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.15 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 98.13 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.13 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.12 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.09 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.06 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.06 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.99 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.97 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.94 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.93 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.92 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.91 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.85 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.84 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.82 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.81 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.81 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.75 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.74 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.72 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.71 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.67 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.65 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.65 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.64 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.64 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.59 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.59 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.57 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.57 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.53 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.52 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.47 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.42 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.41 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.41 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.36 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.36 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.36 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.35 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.33 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 97.28 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 97.27 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 97.26 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.25 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.25 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.25 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.24 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.23 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 97.22 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.17 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.17 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.14 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.12 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.12 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.12 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.11 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.1 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.08 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.07 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.07 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.05 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.0 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.0 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.0 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.99 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.99 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.95 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.95 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.94 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.94 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.93 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.9 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.89 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.89 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.85 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.84 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.83 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.82 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.8 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.79 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.78 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.78 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.76 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.76 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.76 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.75 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.73 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.71 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.71 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.69 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.68 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.67 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.65 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.65 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.65 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.64 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.64 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.63 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.62 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.62 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.62 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.61 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.61 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.6 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.59 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.58 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.57 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.57 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.57 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.57 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.57 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.57 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.57 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.55 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.55 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.54 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.54 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.53 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.53 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.52 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.51 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.5 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.5 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.5 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.49 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.49 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.48 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.48 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.48 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.47 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.47 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.46 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.46 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.46 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.45 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.45 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.45 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.43 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.42 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.42 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.42 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.39 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.39 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.39 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.39 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.38 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.38 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.38 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.37 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.36 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.36 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.35 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.34 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.33 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.32 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.32 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 96.31 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.3 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.29 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.28 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.28 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.28 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.27 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.27 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.27 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.25 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.24 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.24 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.24 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.23 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 96.23 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.22 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.22 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.21 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.21 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.21 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.2 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 96.2 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.19 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.19 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.18 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.18 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 96.18 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.17 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.16 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.16 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.15 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.14 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.13 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 96.12 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.12 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 96.12 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.12 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 96.12 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 96.11 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.11 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.1 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 96.1 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 96.09 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 96.09 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 96.08 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.08 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 96.08 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.08 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.07 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.07 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 96.07 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 96.06 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.06 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 96.05 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.05 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 96.04 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 96.04 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 96.03 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 96.0 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.98 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.98 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.97 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.95 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.94 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.94 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.94 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.93 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.93 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.93 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.93 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.92 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.92 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.92 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.91 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.88 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.88 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.88 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.88 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.86 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.85 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.83 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.82 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.79 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.78 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.78 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.76 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.76 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.76 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.72 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.7 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.7 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.68 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.68 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.67 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.64 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.64 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.64 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.63 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 95.62 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 95.59 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 95.58 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.57 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.56 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.56 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.56 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.54 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.48 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.47 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.43 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.32 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.29 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 95.26 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.26 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.22 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.17 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 95.16 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.11 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 95.08 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.07 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 95.02 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 95.01 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.0 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.95 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.93 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.91 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 94.91 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.9 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 94.89 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 94.88 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.88 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 94.87 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 94.83 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.81 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 94.78 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.74 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 94.73 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.7 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 94.68 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 94.65 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 94.64 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 94.61 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 94.58 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 94.56 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 94.54 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 94.4 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-54 Score=406.64 Aligned_cols=201 Identities=23% Similarity=0.387 Sum_probs=182.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. .+|+.||||||++.+++.+|
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~T 121 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 121 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSC
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCC
Confidence 4899999999999999999999999999999999994 8999999999863 24678999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.|+...... ...+..+++.++++.+||.+..+++ +.+|||||||||+|||||+.+|++||||||
T Consensus 122 V~env~~~~~~~~~---~~~~~~~~v~~lL~~vgL~~~~~~~--------~~~LSGGqkQRVaIArAL~~~P~lLLlDEP 190 (366)
T 3tui_C 122 VFGNVALPLELDNT---PKDEVKRRVTELLSLVGLGDKHDSY--------PSNLSGGQKQRVAIARALASNPKVLLCDQA 190 (366)
T ss_dssp HHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCGGGTTCC--------TTTSCHHHHHHHHHHHHTTTCCSEEEEEST
T ss_pred HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchHhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99999998765432 2344556788999999999999988 566999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..++++|++++++.|+|||+||||+ .++..+||||++|++|++++.|++++++
T Consensus 191 Ts~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 191 TSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999666799999999997 5788999999999999999999999875
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-54 Score=404.61 Aligned_cols=202 Identities=25% Similarity=0.366 Sum_probs=182.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.||||++++||+++|+||||||||||||+|+|+++|+ +|+|+++|+++.. ..++.||||||++.+||.+||+||+
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni 96 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENM 96 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHH
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHH
Confidence 4899999999999999999999999999999999994 8999999999864 2456799999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+.. ...+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 97 ~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~~~r~--------p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD 165 (381)
T 3rlf_A 97 SFGLKLAGA---KKEVINQRVNQVAEVLQLAHLLDRK--------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 (381)
T ss_dssp THHHHHTTC---CHHHHHHHHHHHHHHTTCGGGTTCC--------GGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHcCCchhhcCC--------hhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCC
Confidence 998765432 3344556788999999999999998 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+..+.++++.|+++.++.|.|+|+||||+ .++..+||||++|++|+++..|++++++.
T Consensus 166 ~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 166 AALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999666699999999997 58999999999999999999999998763
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-54 Score=404.01 Aligned_cols=202 Identities=26% Similarity=0.357 Sum_probs=179.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC----c--cccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE----G--KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~----~--~~~~~ig~v~Q~~~~~~~lTv 77 (290)
.||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++. . ..++.||||||++.+||.+||
T Consensus 21 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV 97 (359)
T 3fvq_A 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTV 97 (359)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCH
T ss_pred EeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCH
Confidence 4899999999999999999999999999999999994 899999999982 2 245789999999999999999
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
+||+.|+...+.. ...+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||
T Consensus 98 ~eni~~~l~~~~~---~~~~~~~~v~~~l~~~gL~~~~~r~--------~~~LSGGq~QRValArAL~~~P~lLLLDEPt 166 (359)
T 3fvq_A 98 YRNIAYGLGNGKG---RTAQERQRIEAMLELTGISELAGRY--------PHELSGGQQQRAALARALAPDPELILLDEPF 166 (359)
T ss_dssp HHHHHTTSTTSSC---CSHHHHHHHHHHHHHHTCGGGTTSC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred HHHHHHHHHHcCC---ChHHHHHHHHHHHHHcCCchHhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 9999997654321 2233456688999999999999998 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+|||+..+.++++.|+++.++.|.|+|+||||+ .++..+||||++|++|+++..|+++++..
T Consensus 167 s~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 167 SALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999988887666799999999997 58899999999999999999999998753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-54 Score=382.55 Aligned_cols=202 Identities=25% Similarity=0.377 Sum_probs=173.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c----ccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K----FRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~----~~~~ig~v~Q~~~~~~~l 75 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. . .++.+|||||++.+++.+
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 98 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL 98 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC
Confidence 4799999999999999999999999999999999994 8999999999853 1 134699999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
||+||+.++............+..+++.++++.+++.+. .+++ +.+|||||||||+|||||+.+|++||||
T Consensus 99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK--------PNQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999997654321122334445678899999999875 4777 4559999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|||+|||+.++..++++|++++++.|+|||+||||+ . +..+||++++|++|+++..++++++
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~-~-~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEEECC--
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEEECCEEEEEcChhhh
Confidence 999999999999999999999655589999999997 3 4689999999999999999887653
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-53 Score=387.24 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=177.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC--c----cccccEEEEccCC-CCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE--G----KFRSACGFMYQHD-LFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~--~----~~~~~ig~v~Q~~-~~~~~lT 76 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++. . .+++.||||||++ ..++.+|
T Consensus 25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t 101 (275)
T 3gfo_A 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS 101 (275)
T ss_dssp EEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence 4899999999999999999999999999999999994 899999999984 1 2567899999986 3444789
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.|+...... ...+..+++.++++.++|.+..++++ .+|||||||||+|||||+.+|++||||||
T Consensus 102 v~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LSgGqkQRv~iAraL~~~P~lLlLDEP 170 (275)
T 3gfo_A 102 VYQDVSFGAVNMKL---PEDEIRKRVDNALKRTGIEHLKDKPT--------HCLSFGQKKRVAIAGVLVMEPKVLILDEP 170 (275)
T ss_dssp HHHHHHHHHHTSCC---CHHHHHHHHHHHHHHTTCGGGTTSBG--------GGSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchhhcCCc--------ccCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 99999998765322 23344567889999999999999884 45999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+|||+.++..++++|++++++.|+|||++||++. ++..+|||+++|++|++++.|++++++.
T Consensus 171 ts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred cccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999995344899999999985 6888999999999999999999998753
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-53 Score=396.03 Aligned_cols=201 Identities=23% Similarity=0.376 Sum_probs=180.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..++.+|||||+..+|+.+||+||+
T Consensus 32 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 108 (355)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNV 108 (355)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHH
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999994 8999999999854 3467899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+.. ...+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 109 ~~~l~~~~~---~~~~~~~~v~~~l~~~gL~~~~~r~--------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD 177 (355)
T 1z47_A 109 SFGLREKRV---PKDEMDARVRELLRFMRLESYANRF--------PHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177 (355)
T ss_dssp HHHHHHTTC---CHHHHHHHHHHHHHHTTCGGGTTSC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSS
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHcCChhHhcCC--------cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 998765321 2233456788999999999999998 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+..+.++++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|++++++
T Consensus 178 ~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 178 TQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999655589999999997 5788999999999999999999999875
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-53 Score=380.63 Aligned_cols=200 Identities=26% Similarity=0.370 Sum_probs=175.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----------------cccccEEEEc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----------------KFRSACGFMY 66 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----------------~~~~~ig~v~ 66 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.+||||
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 99 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVF 99 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEEC
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcceEEEe
Confidence 4799999999999999999999999999999999994 8999999998751 2356799999
Q ss_pred cCCCCCCCCCHHHHHHHHH-HhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHH
Q psy2520 67 QHDLFSPSLTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATEL 144 (290)
Q Consensus 67 Q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL 144 (290)
|++.+++.+||+||+.++. ..... ......+++.++++.++|.+. .++++ .+|||||||||+|||||
T Consensus 100 Q~~~l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~~LSgGq~qRv~lAraL 168 (262)
T 1b0u_A 100 QHFNLWSHMTVLENVMEAPIQVLGL---SKHDARERALKYLAKVGIDERAQGKYP--------VHLSGGQQQRVSIARAL 168 (262)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHTTCCHHHHTSCG--------GGSCHHHHHHHHHHHHH
T ss_pred cCcccCCCCcHHHHHHhhHHHhcCC---CHHHHHHHHHHHHHHcCCCchhhcCCc--------ccCCHHHHHHHHHHHHH
Confidence 9999999999999999864 33211 122334567899999999988 88884 45999999999999999
Q ss_pred HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 145 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 145 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.+|++|||||||+|||+.++..++++|++++++ |+|||++|||+ .++..+||++++|++|++++.|++++++
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999554 89999999997 5788899999999999999999998764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-53 Score=379.44 Aligned_cols=200 Identities=25% Similarity=0.390 Sum_probs=176.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC--c----cccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE--G----KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~--~----~~~~~ig~v~Q~~~~~~~lTv 77 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++. . .+++.+|||||++.+++.+||
T Consensus 41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 117 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTV 117 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCH
Confidence 4799999999999999999999999999999999994 899999999984 1 245679999999999999999
Q ss_pred HHHHHHHH-HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 78 YEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 78 ~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+||+.|+. ..... ......+++.++++.++|.+..++++ .+|||||||||+|||||+.+|++||||||
T Consensus 118 ~e~l~~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LSgGqkQRv~lAraL~~~p~lllLDEP 186 (263)
T 2olj_A 118 LNNITLAPMKVRKW---PREKAEAKAMELLDKVGLKDKAHAYP--------DSLSGGQAQRVAIARALAMEPKIMLFDEP 186 (263)
T ss_dssp HHHHHHHHHHTSCC---CHHHHHHHHHHHHHHTTCGGGTTSCG--------GGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHCCCchHhcCCh--------hhCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 99999864 33221 12233456789999999998888884 45999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..++++|++++++ |+|||++|||+ .++..+||++++|++|++++.|++++++
T Consensus 187 ts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 187 TSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999554 99999999997 5788899999999999999999998764
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-53 Score=395.06 Aligned_cols=202 Identities=24% Similarity=0.365 Sum_probs=180.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..++.+|||||+..+|+.+||+||+
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 96 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNI 96 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHH
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHH
Confidence 4899999999999999999999999999999999994 8999999999854 2456899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+.. ...+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 97 ~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~~~r~--------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD 165 (362)
T 2it1_A 97 AFPLELRKA---PREEIDKKVREVAKMLHIDKLLNRY--------PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165 (362)
T ss_dssp HHHHHHTTC---CHHHHHHHHHHHHHHTTCTTCTTCC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSC
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHcCCchHhhCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 998754321 2233456688999999999999998 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+..+.++++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|++++++.
T Consensus 166 ~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 166 ALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999655589999999997 57889999999999999999999998753
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-53 Score=395.52 Aligned_cols=202 Identities=23% Similarity=0.345 Sum_probs=179.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..++.+|||||++.+|+.+||+||+
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 96 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENI 96 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHH
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 4899999999999999999999999999999999994 8999999999854 2457899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. ....+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 97 ~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~--------~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD 165 (359)
T 2yyz_A 97 AFPLRARR---ISKDEVEKRVVEIARKLLIDNLLDRK--------PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165 (359)
T ss_dssp HGGGSSSC---SHHHHTTHHHHHHHHHTTCGGGTTSC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred HHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 99754332 12233345688999999999999998 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+..+..+++.|+++.++.|.|+|++|||+ .++..+||++++|++|+++..|++++++.
T Consensus 166 ~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 166 ANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999655589999999997 57889999999999999999999998753
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=394.13 Aligned_cols=202 Identities=23% Similarity=0.358 Sum_probs=180.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..++.||||||+..+|+.+
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 96 (372)
T 1g29_1 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM 96 (372)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTS
T ss_pred eeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCC
Confidence 4899999999999999999999999999999999994 8999999998743 2356799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||+||+.|+...+.. ...+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||
T Consensus 97 tv~eni~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~~~r~--------~~~LSGGq~QRvalArAL~~~P~lLLLDE 165 (372)
T 1g29_1 97 TVYDNIAFPLKLRKV---PRQEIDQRVREVAELLGLTELLNRK--------PRELSGGQRQRVALGRAIVRKPQVFLMDE 165 (372)
T ss_dssp CHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHTCGGGTTCC--------GGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHCCCchHhcCC--------cccCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 999999998765321 2233446688999999999999998 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||++||+..+.++++.|+++.++.|.|+|+||||+ .++..+||++++|++|+++..|++++++.
T Consensus 166 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 166 PLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999655589999999997 57889999999999999999999998753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-53 Score=380.19 Aligned_cols=199 Identities=28% Similarity=0.399 Sum_probs=176.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. .+++.++|++|++.+++.+||+|
T Consensus 28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (266)
T 4g1u_C 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE 104 (266)
T ss_dssp EEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHH
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHH
Confidence 4799999999999999999999999999999999994 8999999999864 24567999999998888899999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh------CCCeEEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT------DPALLLC 153 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~------~p~llll 153 (290)
|+.++...... ....+++.++++.+++.+..++.+ .+|||||||||+|||||+. +|++|||
T Consensus 105 ~l~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~QRv~iAraL~~~~~~~~~p~lLll 171 (266)
T 4g1u_C 105 VIQMGRAPYGG-----SQDRQALQQVMAQTDCLALAQRDY--------RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFL 171 (266)
T ss_dssp HHHGGGTTSCS-----TTHHHHHHHHHHHTTCSTTTTSBG--------GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEE
T ss_pred HHHhhhhhcCc-----HHHHHHHHHHHHHcCChhHhcCCc--------ccCCHHHHHHHHHHHHHhcccccCCCCCEEEE
Confidence 99987543211 112345788999999999988884 4599999999999999999 9999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||+|||+.++..++++|++++++.|+|||++|||+ .++..+|||+++|++|++++.|++++++
T Consensus 172 DEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 172 DEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred eCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999665578999999997 5788899999999999999999999764
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-53 Score=394.78 Aligned_cols=201 Identities=22% Similarity=0.340 Sum_probs=179.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..++.+|||||++.+|+.+|
T Consensus 22 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~lt 98 (353)
T 1oxx_K 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLT 98 (353)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSC
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCC
Confidence 3899999999999999999999999999999999994 8999999998743 24678999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.|+...+. ....+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++||||||
T Consensus 99 v~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~--------~~~LSGGq~QRvalAraL~~~P~lLLLDEP 167 (353)
T 1oxx_K 99 AFENIAFPLTNMK---MSKEEIRKRVEEVAKILDIHHVLNHF--------PRELSGAQQQRVALARALVKDPSLLLLDEP 167 (353)
T ss_dssp HHHHHHGGGTTSS---CCHHHHHHHHHHHHHHTTCGGGTTSC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCC--------hhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 9999999764432 12233456788999999999999998 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|++||+..+.++++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|++++++
T Consensus 168 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 168 FSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp TTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999655589999999997 5788999999999999999999999875
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-53 Score=392.05 Aligned_cols=198 Identities=28% Similarity=0.398 Sum_probs=178.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..++.+|||||++.+|+.+||+||+
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl 93 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNL 93 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHH
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999994 8999999999854 2456899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+.... . +++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 94 ~~~~~~~~~~~---~---~~v~~~l~~~~L~~~~~~~--------~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD 159 (348)
T 3d31_A 94 EFGMRMKKIKD---P---KRVLDTARDLKIEHLLDRN--------PLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159 (348)
T ss_dssp HHHHHHHCCCC---H---HHHHHHHHHTTCTTTTTSC--------GGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSC
T ss_pred HHHHHHcCCCH---H---HHHHHHHHHcCCchHhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 99865432111 1 4578899999999999998 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|++++++
T Consensus 160 ~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 160 PRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999666699999999997 5788999999999999999999999765
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-52 Score=374.93 Aligned_cols=201 Identities=23% Similarity=0.327 Sum_probs=176.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.+||+||++.+++.+||+||
T Consensus 32 ~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 108 (256)
T 1vpl_A 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEY 108 (256)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHH
Confidence 4799999999999999999999999999999999994 8999999999853 356789999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.++...... ......+++.++++.++|.+..++++ .+|||||||||+|||||+.+|++|||||||+||
T Consensus 109 l~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LSgGq~qRv~lAraL~~~p~lllLDEPts~L 177 (256)
T 1vpl_A 109 LRFVAGFYAS---SSSEIEEMVERATEIAGLGEKIKDRV--------STYSKGMVRKLLIARALMVNPRLAILDEPTSGL 177 (256)
T ss_dssp HHHHHHHHCC---CHHHHHHHHHHHHHHHCCGGGGGSBG--------GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTC
T ss_pred HHHHHHHcCC---ChHHHHHHHHHHHHHCCCchHhcCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccc
Confidence 9987543221 12223356788999999998888884 459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+.++..++++|++++ +.|+|||++||++ .++..+||++++|++|++++.|+++++..
T Consensus 178 D~~~~~~l~~~l~~l~-~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 178 DVLNAREVRKILKQAS-QEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp CHHHHHHHHHHHHHHH-HTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-hCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999995 4589999999997 57788999999999999999999987653
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-52 Score=367.61 Aligned_cols=194 Identities=27% Similarity=0.401 Sum_probs=170.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------ccc-ccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFR-SACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~-~~ig~v~Q~~~~~~~l 75 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .++ +.+|||||++.+++.+
T Consensus 21 ~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 97 (224)
T 2pcj_A 21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL 97 (224)
T ss_dssp EEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCC
Confidence 4799999999999999999999999999999999994 8999999999853 122 6799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||+||+.++...... ......+++.++++.++|.+..++++ .+|||||||||+|||||+.+|++|||||
T Consensus 98 tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~laral~~~p~lllLDE 166 (224)
T 2pcj_A 98 TALENVIVPMLKMGK---PKKEAKERGEYLLSELGLGDKLSRKP--------YELSGGEQQRVAIARALANEPILLFADE 166 (224)
T ss_dssp CHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHTTCTTCTTCCG--------GGSCHHHHHHHHHHHHTTTCCSEEEEES
T ss_pred CHHHHHHhHHHHcCC---CHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999999987654321 12233456789999999999888884 4599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
||+|||+.++..+++.|++++++ |+|||++|||+ ..+ .+||++++|++|++++.|+
T Consensus 167 Pt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 167 PTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999555 89999999996 455 8999999999999999885
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-52 Score=394.90 Aligned_cols=202 Identities=23% Similarity=0.317 Sum_probs=173.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..++.||||||+..+|+.+||+||+
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 104 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENI 104 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHH
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 4799999999999999999999999999999999994 8999999999854 2456899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. ....+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||++||
T Consensus 105 ~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~--------~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD 173 (372)
T 1v43_A 105 AFPLKIKK---FPKDEIDKRVRWAAELLQIEELLNRY--------PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173 (372)
T ss_dssp HTTCC--C---CCHHHHHHHHHHHHHHTTCGGGTTSC--------TTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred HHHHHhcC---CCHHHHHHHHHHHHHHcCChhHhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 99753322 12333456688999999999999998 56699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+..+.++++.|+++.++.|.|+|++|||+ .++..+||++++|++|+++..|++++++.
T Consensus 174 ~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 174 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999655589999999997 57889999999999999999999998753
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-52 Score=372.35 Aligned_cols=198 Identities=25% Similarity=0.374 Sum_probs=174.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||++++ |+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.+||+||++.+++.+||+||+
T Consensus 16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHH
Confidence 479999999 999999999999999999999999994 8999999999853 3467899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. .. ...+++.++++.++|.+..++++ .+|||||||||+|||||+.+|++|||||||+|||
T Consensus 92 ~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD 158 (240)
T 2onk_A 92 AYGLRNVE---RV--ERDRRVREMAEKLGIAHLLDRKP--------ARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158 (240)
T ss_dssp HTTCTTSC---HH--HHHHHHHHHHHTTTCTTTTTCCG--------GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCC
T ss_pred HHHHHHcC---Cc--hHHHHHHHHHHHcCCHHHhcCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 98643221 11 12456788999999998888884 4599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+.++..+++.|++++++.|+|||++||++ .++..+||++++|++|+++..|++++++
T Consensus 159 ~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 159 LKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999554589999999997 5788999999999999999999998764
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-52 Score=370.81 Aligned_cols=199 Identities=24% Similarity=0.345 Sum_probs=172.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. . .++.+||+||++.+++.+||+
T Consensus 23 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 99 (240)
T 1ji0_A 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVY 99 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHH
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHH
Confidence 4799999999999999999999999999999999994 8999999999853 1 245699999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELG-LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
||+.++...... .....+.+.++++.++ +.+..+++ +.+|||||||||+|||||+.+|++|||||||
T Consensus 100 enl~~~~~~~~~----~~~~~~~~~~~l~~~~~l~~~~~~~--------~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 167 (240)
T 1ji0_A 100 ENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQL--------GGTLSGGEQQMLAIGRALMSRPKLLMMDEPS 167 (240)
T ss_dssp HHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSB--------SSSSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred HHHHHhhhcCCC----HHHHHHHHHHHHHHcccHhhHhcCC--------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 999986421111 1122345678899994 88888888 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+|||+.++..+++.|+++++ .|+|||++||++ .++..+||++++|++|++++.|++++++
T Consensus 168 s~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 168 LGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999954 589999999997 4788999999999999999999988764
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-52 Score=375.31 Aligned_cols=201 Identities=21% Similarity=0.290 Sum_probs=174.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. .+++.+|||||++.+++.+||+
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 100 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVL 100 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHH
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHH
Confidence 4799999999999999999999999999999999994 8999999999853 1356799999999999999999
Q ss_pred HHHHHHHHh-cCch---------hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 79 EHLYFMALL-KLDR---------RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 79 e~l~~~~~~-~~~~---------~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
||+.++... .... ........+++.++++.+||.+..++++ .+|||||||||+|||||+.+|
T Consensus 101 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGqkQrv~iAraL~~~p 172 (257)
T 1g6h_A 101 ENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA--------GELSGGQMKLVEIGRALMTNP 172 (257)
T ss_dssp HHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG--------GGSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc--------hhCCHHHHHHHHHHHHHHcCC
Confidence 999986432 1110 0111223456789999999998888884 459999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
++|||||||+|||+.++..++++|+++++ .|+|||++||++. ++..+||++++|++|++++.|++++
T Consensus 173 ~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 173 KMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999954 4899999999984 6788999999999999999999887
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-51 Score=369.09 Aligned_cols=200 Identities=24% Similarity=0.406 Sum_probs=173.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCC-CCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHD-LFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~-~~~~~lTv~e~l 81 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.+|||||++ .+++.+||+||+
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl 100 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEV 100 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHH
Confidence 4799999999999999999999999999999999994 8999999998754 3567899999995 566779999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCC--CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLM--NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
.|+.... ... ....+++.++++.+||. +..++++ .+|||||||||+|||||+.+|++|||||||+|
T Consensus 101 ~~~~~~~-~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~--------~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 101 AFAVKNF-YPD---RDPVPLVKKAMEFVGLDFDSFKDRVP--------FFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHTTTTT-CTT---SCSHHHHHHHHHHTTCCHHHHTTCCG--------GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHhc-CCH---HHHHHHHHHHHHHcCcCCcccccCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence 9864322 111 11124567899999998 8888884 45999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+.++..+++.|++++++ |.|||++||++. ++..+||++++|++|++++.|++++++.
T Consensus 169 LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTL-GKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHT-TCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999555 899999999984 6778999999999999999999987653
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-51 Score=368.96 Aligned_cols=202 Identities=22% Similarity=0.295 Sum_probs=168.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. .+++.||||||++.+++ .||+|
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e 111 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRE 111 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHH
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHH
Confidence 4799999999999999999999999999999999994 8999999999853 24567999999998887 59999
Q ss_pred HHHHHHHhcCc-hhhhHHHHHHHHHHHHHHc--CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 80 HLYFMALLKLD-RRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 80 ~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~--~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+.|+...... ...........+.++++.+ |+....+++ +.+|||||||||+|||||+.+|++||||||
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~--------~~~LSgGq~QRv~lAraL~~~p~lllLDEP 183 (271)
T 2ixe_A 112 NIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET--------GNQLSGGQRQAVALARALIRKPRLLILDNA 183 (271)
T ss_dssp HHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG--------GTTSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC--------cCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99986422111 1111111223356778887 777777777 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+++.|++++++.|+|||++||++ ..+ ..||++++|++|+++..|++++++
T Consensus 184 ts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~-~~~d~v~~l~~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 184 TSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLA-ERAHHILFLKEGSVCEQGTHLQLM 244 (271)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHH-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999998544589999999997 355 469999999999999999998765
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=361.69 Aligned_cols=194 Identities=26% Similarity=0.382 Sum_probs=171.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+|||||||||||++|+|+++| + |+|.++|+++.. .+++.+||+||++.+++.+||+|
T Consensus 17 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 92 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH 92 (249)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHH
Confidence 479999999999999999999999999999999998 6 999999999753 24567999999998899999999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC-------eEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA-------LLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~-------lll 152 (290)
|+.++.. .. .. .+++.++++.++|.+..++++ .+|||||||||+|||||+.+|+ +||
T Consensus 93 ~l~~~~~-~~---~~----~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll 156 (249)
T 2qi9_C 93 YLTLHQH-DK---TR----TELLNDVAGALALDDKLGRST--------NQLSGGEWQRVRLAAVVLQITPQANPAGQLLL 156 (249)
T ss_dssp HHHTTCS-ST---TC----HHHHHHHHHHTTCGGGTTSBG--------GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred HHHHhhc-cC---Cc----HHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE
Confidence 9987521 11 11 345678999999998888884 4599999999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..+++.|++++++ |+|||++|||+ .++..+||++++|++|++++.|++++++
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 157 LDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp ESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999544 89999999997 4778899999999999999999988653
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-51 Score=363.02 Aligned_cols=199 Identities=23% Similarity=0.239 Sum_probs=164.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcC--CCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~--~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++.. . .+..++|+||++.+++.+|
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 96 (250)
T 2d2e_A 20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVT 96 (250)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCB
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCC
Confidence 479999999999999999999999999999998 677 48999999999853 1 2346999999999999999
Q ss_pred HHHHHHHHHHh-cCchhhhHHHHHHHHHHHHHHcCC-CCccCcccCCcCCCCCCC-CChHHHHHHHHHHHHHhCCCeEEE
Q psy2520 77 VYEHLYFMALL-KLDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQKVV-LSGGERKRLSFATELLTDPALLLC 153 (290)
Q Consensus 77 v~e~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~v~~~~~~~~~~-LSgGqrqRv~ia~aL~~~p~llll 153 (290)
|+||+.++... ... ........+++.++++.+++ .+..+++ +.+ |||||||||+|||||+.+|++|||
T Consensus 97 v~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~~~LSgGqkQrv~iAraL~~~p~lllL 167 (250)
T 2d2e_A 97 IANFLRLALQAKLGR-EVGVAEFWTKVKKALELLDWDESYLSRY--------LNEGFSGGEKKRNEILQLLVLEPTYAVL 167 (250)
T ss_dssp HHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHTCCGGGGGSB--------TTCC----HHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHhhccc-cCCHHHHHHHHHHHHHHcCCChhHhcCC--------cccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999986532 110 01112234567889999999 4777877 666 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhh-cCeEEEEeCCeEEEEcCHH
Q psy2520 154 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 154 DEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~-~d~v~~l~~G~i~~~g~~~ 216 (290)
||||+|||+.++..++++|+++ ++.|+|||++||++. ++..+ ||++++|++|++++.|+++
T Consensus 168 DEPts~LD~~~~~~l~~~l~~l-~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 168 DETDSGLDIDALKVVARGVNAM-RGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp ECGGGTTCHHHHHHHHHHHHHH-CSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHH
T ss_pred eCCCcCCCHHHHHHHHHHHHHH-HhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999 446899999999974 66667 5999999999999999987
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=367.70 Aligned_cols=203 Identities=26% Similarity=0.349 Sum_probs=170.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC--c----cccccEEEEccCCCC--CCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE--G----KFRSACGFMYQHDLF--SPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~--~----~~~~~ig~v~Q~~~~--~~~l 75 (290)
.||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++. . .+++.||||||++.+ .+.+
T Consensus 38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~l 114 (279)
T 2ihy_A 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGE 114 (279)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTS
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCC
Confidence 4799999999999999999999999999999999994 899999999875 2 346789999998643 3457
Q ss_pred CHHHHHHHHHHhc-CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 76 TVYEHLYFMALLK-LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 76 Tv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
||+||+.++.... ...........+++.++++.++|.+..++++ .+|||||||||+|||||+.+|++||||
T Consensus 115 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGqkqRv~lAraL~~~p~lLlLD 186 (279)
T 2ihy_A 115 RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI--------GYLSTGEKQRVMIARALMGQPQVLILD 186 (279)
T ss_dssp BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG--------GGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred CHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 9999998853210 0000011223456788999999998888884 459999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEE--EEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTV--LCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~ti--i~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+|||+.++..++++|++++++ |+|| |++|||+. ++..+||++++|++|++++.|++++++
T Consensus 187 EPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 187 EPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGG-GCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred CCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999555 8999 99999974 677899999999999999999988653
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-50 Score=368.00 Aligned_cols=196 Identities=24% Similarity=0.418 Sum_probs=162.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.||||||++.+|+ .||+|
T Consensus 71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~e 146 (306)
T 3nh6_A 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIAD 146 (306)
T ss_dssp EEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHH
T ss_pred eeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHH
Confidence 4799999999999999999999999999999999994 8999999999864 36788999999998885 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-------ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.|+...... +.+.++++.+++.+ ..++.+++. ..+|||||||||+|||||+.+|+|||
T Consensus 147 Ni~~~~~~~~~---------~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~----g~~LSGGqrQRvaiARAL~~~p~iLl 213 (306)
T 3nh6_A 147 NIRYGRVTAGN---------DEVEAAAQAAGIHDAIMAFPEGYRTQVGER----GLKLSGGEKQRVAIARTILKAPGIIL 213 (306)
T ss_dssp HHHTTSTTCCH---------HHHHHHHHHHTCHHHHHHSTTGGGCEESTT----SBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHhhcccCCH---------HHHHHHHHHhCcHHHHHhccchhhhHhcCC----cCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99986432211 11223333333322 234444442 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||++||+.+...+++.|+++. + ++|+|+|||++. .+. .||+|++|++|+++..|++++++.
T Consensus 214 LDEPts~LD~~~~~~i~~~l~~l~-~-~~Tvi~itH~l~-~~~-~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 214 LDEATSALDTSNERAIQASLAKVC-A-NRTTIVVAHRLS-TVV-NADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHH-T-TSEEEEECCSHH-HHH-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEEcChH-HHH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999984 3 689999999974 555 599999999999999999998764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=355.55 Aligned_cols=194 Identities=24% Similarity=0.329 Sum_probs=166.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|. +++.+||+||++.+++.+||+||+.+
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~---------~~~~i~~v~q~~~~~~~~tv~enl~~ 89 (253)
T 2nq2_C 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIE---------VYQSIGFVPQFFSSPFAYSVLDIVLM 89 (253)
T ss_dssp EEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEE---------ECSCEEEECSCCCCSSCCBHHHHHHG
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEE---------EeccEEEEcCCCccCCCCCHHHHHHH
Confidence 4799999999999999999999999999999999994 89998 24679999999988889999999998
Q ss_pred HHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 84 MALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+...... .........+++.++++.++|.+..++++ .+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~ 161 (253)
T 2nq2_C 90 GRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF--------TSLSGGQRQLILIARAIASECKLILLDEPTSALDL 161 (253)
T ss_dssp GGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG--------GGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCH
T ss_pred hhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 6432110 00001122355788999999998888884 45999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.++..+++.|++++++.|+|||++|||+ .++..+||++++|++|+ ++.|++++++
T Consensus 162 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 162 ANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 9999999999999554589999999997 57888999999999999 9999988653
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=357.79 Aligned_cols=209 Identities=23% Similarity=0.249 Sum_probs=172.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCCccEEEECCEecCc----cc-cccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEG----KF-RSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~--~~~~~~~G~I~i~G~~~~~----~~-~~~ig~v~Q~~~~~~~lT 76 (290)
.||||++++||+++|+||||||||||||+|+|+. +| ++|+|.++|+++.. .. ++.++|+||++.+++.+|
T Consensus 37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~t 113 (267)
T 2zu0_C 37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVS 113 (267)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCB
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccccc
Confidence 4799999999999999999999999999999994 46 48999999999853 12 345999999999999999
Q ss_pred HHHHHHHHHH-hc---CchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCC-CCChHHHHHHHHHHHHHhCCCe
Q psy2520 77 VYEHLYFMAL-LK---LDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKV-VLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 77 v~e~l~~~~~-~~---~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~-~LSgGqrqRv~ia~aL~~~p~l 150 (290)
|.||+.+... .. ...........+++.++++.++|. +..+++ +. +|||||||||+|||||+.+|++
T Consensus 114 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~~~LSgGq~QRv~iAraL~~~p~l 185 (267)
T 2zu0_C 114 NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS--------VNVGFSGGEKKRNDILQMAVLEPEL 185 (267)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB--------TTTTCCHHHHHHHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC--------cccCCCHHHHHHHHHHHHHHhCCCE
Confidence 9999987542 11 100111222345678999999996 567777 44 3999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhh-cCeEEEEeCCeEEEEcCHHHHHHHHHHCC
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSRTAFIGSKDAALAFLESQG 226 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~~~~~g 226 (290)
|||||||+|||+.++..++++|+++ ++.|+|||++|||+. ++..+ ||++++|++|++++.|+++++.. +...+
T Consensus 186 LlLDEPts~LD~~~~~~l~~~l~~l-~~~g~tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~ 259 (267)
T 2zu0_C 186 CILDESDSGLDIDALKVVADGVNSL-RDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQG 259 (267)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHTT-CCSSCEEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCEEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcc
Confidence 9999999999999999999999998 455899999999974 56665 89999999999999999987653 34433
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-50 Score=356.64 Aligned_cols=195 Identities=23% Similarity=0.379 Sum_probs=162.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.||||||++.+++ .||+|
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e 101 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIID 101 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHH
Confidence 4799999999999999999999999999999999994 8999999999853 25678999999988886 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcc-------cCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR-------IGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.|+.. . .. .+.+.++++.+++.+..++. ++. .+.+|||||||||+|||||+.+|++||
T Consensus 102 nl~~~~~--~---~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~----~~~~LSgGq~qRv~iAraL~~~p~lll 168 (247)
T 2ff7_A 102 NISLANP--G---MS----VEKVIYAAKLAGAHDFISELREGYNTIVGE----QGAGLSGGQRQRIAIARALVNNPKILI 168 (247)
T ss_dssp HHTTTCT--T---CC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST----TTTCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHhccCC--C---CC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC----CCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9987521 1 11 12345566667765443332 111 145699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..+++.|+++ ++ |+|||++||++. .+ ..||++++|++|++++.|++++++
T Consensus 169 LDEPts~LD~~~~~~i~~~l~~~-~~-g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 169 FDEATSALDYESEHVIMRNMHKI-CK-GRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp ECCCCSCCCHHHHHHHHHHHHHH-HT-TSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHH-cC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999 44 899999999974 45 569999999999999999998764
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-49 Score=351.92 Aligned_cols=200 Identities=26% Similarity=0.351 Sum_probs=166.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .+++.+|||||++.+++ .||+|
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~e 94 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRE 94 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHH
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHH
Confidence 4799999999999999999999999999999999994 8999999999853 35678999999998887 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccC---CcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG---SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~---~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+.|+.... .. .+.+.++++.+++.+..++.+. ......+.+|||||||||+|||||+.+|++||||||
T Consensus 95 nl~~~~~~~----~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEP 166 (243)
T 1mv5_A 95 NLTYGLEGD----YT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA 166 (243)
T ss_dssp HTTSCTTSC----SC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred HHhhhccCC----CC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 998752111 11 1235678888998776654321 000001456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+++.|++++ + |+|||++||++ ..+ ..||++++|++|+++..|++++++
T Consensus 167 ts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 167 TASLDSESESMVQKALDSLM-K-GRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp SCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999994 4 89999999997 345 569999999999999999998765
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-49 Score=343.91 Aligned_cols=185 Identities=23% Similarity=0.322 Sum_probs=159.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++. .+++.++|+||++.+++.+||+||+.+
T Consensus 26 ~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~-~~~~~i~~v~q~~~~~~~~tv~enl~~ 101 (214)
T 1sgw_A 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT-KVKGKIFFLPEEIIVPRKISVEDYLKA 101 (214)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG-GGGGGEEEECSSCCCCTTSBHHHHHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh-hhcCcEEEEeCCCcCCCCCCHHHHHHH
Confidence 4799999999999999999999999999999999994 899999999886 457789999999999999999999998
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
+...... ... .+++.++++.+++.+. +++ +.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 102 ~~~~~~~-~~~----~~~~~~~l~~~gl~~~-~~~--------~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~ 167 (214)
T 1sgw_A 102 VASLYGV-KVN----KNEIMDALESVEVLDL-KKK--------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 167 (214)
T ss_dssp HHHHTTC-CCC----HHHHHHHHHHTTCCCT-TSB--------GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred HHHhcCC-chH----HHHHHHHHHHcCCCcC-CCC--------hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHH
Confidence 7543321 111 2456789999999887 777 4459999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
++..+++.|+++++ .|+|||++||++. ++..+||+++++ .|+|
T Consensus 168 ~~~~l~~~l~~~~~-~g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 168 SKHKVLKSILEILK-EKGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp THHHHHHHHHHHHH-HHSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 99999999999954 4899999999985 678889998865 4554
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-48 Score=347.25 Aligned_cols=194 Identities=28% Similarity=0.411 Sum_probs=160.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++|++++|+|||||||||||++|+|+++| +|+|.++|+++.. .+++.||||||++.+++ .||+|
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e 111 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKY 111 (260)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHH
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHH
Confidence 479999999999999999999999999999999876 6999999999853 25678999999998886 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-------ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.|+.. . ... +.+.++++.+++.+ ..++.++.. +.+|||||||||+|||||+.+|++||
T Consensus 112 nl~~~~~-~----~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~----~~~LSgGqkqRv~lAraL~~~p~lll 178 (260)
T 2ghi_A 112 NILYGKL-D----ATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNK----GMKLSGGERQRIAIARCLLKDPKIVI 178 (260)
T ss_dssp HHHTTCT-T----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSS----SBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHhccCC-C----CCH----HHHHHHHHHhCCHHHHHhccccccccccCC----cCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9987521 1 111 22345566666533 223222221 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..+++.|+++ ++ |+|||++||++. .+ ..||++++|++|+++..|++++++
T Consensus 179 LDEPts~LD~~~~~~i~~~l~~l-~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 179 FDEATSSLDSKTEYLFQKAVEDL-RK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHH-TT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHh-cC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999 44 799999999974 44 569999999999999999998765
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-48 Score=347.84 Aligned_cols=189 Identities=24% Similarity=0.259 Sum_probs=165.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEE-EEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACG-FMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig-~v~Q~~~~~~~lTv~e~l 81 (290)
.|+||+++ |++++|+|||||||||||++|+|++ |+ +|+|.++|+++.. ..++.++ |+||++.+ .+||+||+
T Consensus 22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl 94 (263)
T 2pjz_A 22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIV 94 (263)
T ss_dssp EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHH
T ss_pred EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHH
Confidence 47999999 9999999999999999999999999 84 8999999998753 1256799 99999876 88999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
.++..... . ..+++.++++.++|. +..++++ .+|||||||||+|||||+.+|++|||||||+||
T Consensus 95 ~~~~~~~~---~----~~~~~~~~l~~~gl~~~~~~~~~--------~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 95 YLYEELKG---L----DRDLFLEMLKALKLGEEILRRKL--------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHTC---C----CHHHHHHHHHHTTCCGGGGGSBG--------GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHhhhhcc---h----HHHHHHHHHHHcCCChhHhcCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 98754321 1 123467899999998 8888884 459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcC-eEEEEeCCeEEEEcCHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD-KIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d-~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+.++..+++.|+++ .+ |||++||++ .++.++|| ++++|++|++++.|++++++
T Consensus 160 D~~~~~~l~~~L~~~-~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 160 DAARRHVISRYIKEY-GK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp CHHHHHHHHHHHHHS-CS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred CHHHHHHHHHHHHHh-cC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999999999999988 33 999999997 46778999 99999999999999998765
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-48 Score=364.63 Aligned_cols=198 Identities=23% Similarity=0.294 Sum_probs=165.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++||+++|+|||||||||||++|+|+++ + +|+|+++|+++.. .+++.+|||||++.+|+ +||+|
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~e 112 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRK 112 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHH
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHH
Confidence 58999999999999999999999999999999986 3 7999999999864 25678999999999887 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCC---cCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS---SSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~---~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+.+.. . .. .+++.++++.++|.+..++.+.. ........|||||||||+|||||+.+|++||||||
T Consensus 113 nl~~~~--~----~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEP 182 (390)
T 3gd7_A 113 NLDPNA--A----HS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEP 182 (390)
T ss_dssp HHCTTC--C----SC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESH
T ss_pred Hhhhcc--c----cC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 996421 1 11 23467889999998877777221 00000123999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|++||+..+.++++.|+++ . .++|+|++||++. ....||||++|++|+++..|++++++.
T Consensus 183 ts~LD~~~~~~l~~~l~~~-~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 183 SAHLDPVTYQIIRRTLKQA-F-ADCTVILCEARIE--AMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp HHHSCHHHHHHHHHHHHTT-T-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHH-h-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999986 3 4799999999963 456799999999999999999998764
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=332.03 Aligned_cols=185 Identities=26% Similarity=0.421 Sum_probs=149.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++||++++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++|+||++.+++. ||+||+.|
T Consensus 25 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g---------~i~~v~q~~~~~~~-tv~enl~~ 91 (229)
T 2pze_A 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG---------RISFCSQFSWIMPG-TIKENIIF 91 (229)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS---------CEEEECSSCCCCSB-CHHHHHHT
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC---------EEEEEecCCcccCC-CHHHHhhc
Confidence 4799999999999999999999999999999999994 89999998 39999999988885 99999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCcc-------CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQ-------HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+... .. . .+.++++.+++.+.. ++.++.. +.+|||||||||+|||||+.+|++||||||
T Consensus 92 ~~~~---~~---~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~LSgGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 92 GVSY---DE---Y----RYRSVIKACQLEEDISKFAEKDNIVLGEG----GITLSGGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp TSCC---CH---H----HHHHHHHHTTCHHHHTTSTTGGGSCBCTT----CTTSCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred cCCc---Ch---H----HHHHHHHHhCcHHHHHhCcccccccccCC----CCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 5311 10 0 112233333432221 2222221 456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRM-MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~-l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+++. ++++ .+ |+|||++||++ ..+ ..||++++|++|++++.|+++++.
T Consensus 158 ts~LD~~~~~~i~~~l~~~~-~~-~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 158 FGYLDVLTEKEIFESCVCKL-MA-NKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp TTTSCHHHHHHHHHHCCCCC-TT-TSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHh-hC-CCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999997 4565 33 78999999997 355 469999999999999999998764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=333.59 Aligned_cols=187 Identities=25% Similarity=0.428 Sum_probs=150.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++| .+|||||++.+ +.+||+||+.+
T Consensus 22 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g---------~i~~v~Q~~~~-~~~tv~enl~~ 88 (237)
T 2cbz_A 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG---------SVAYVPQQAWI-QNDSLRENILF 88 (237)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS---------CEEEECSSCCC-CSEEHHHHHHT
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC---------EEEEEcCCCcC-CCcCHHHHhhC
Confidence 4799999999999999999999999999999999984 89999998 39999999764 57899999988
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCC-----ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMN-----SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
+.... . ..........++++.+++.. ..+++ +.+|||||||||+|||||+.+|++|||||||+
T Consensus 89 ~~~~~--~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 156 (237)
T 2cbz_A 89 GCQLE--E--PYYRSVIQACALLPDLEILPSGDRTEIGEK--------GVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156 (237)
T ss_dssp TSCCC--T--THHHHHHHHTTCHHHHTTSTTGGGSEESTT--------SBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred ccccC--H--HHHHHHHHHHhhHHHHHhccccccccccCC--------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 53211 1 11111111112233344321 13344 45699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH---HHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 159 GLDSFSASKLIRMMR---ELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 159 gLD~~~~~~i~~~l~---~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||+.++..+++.|. ++ . .|+|||++||++. .+ ..||++++|++|+++..|++++++
T Consensus 157 ~LD~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 157 AVDAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp TSCHHHHHHHHHHTTSTTST-T-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 999999999999995 44 3 4899999999985 44 579999999999999999998765
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=368.69 Aligned_cols=203 Identities=23% Similarity=0.386 Sum_probs=162.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .++++++||||++.+|+. ||+|
T Consensus 360 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~e 435 (587)
T 3qf4_A 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKE 435 (587)
T ss_dssp EEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHH
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHH
Confidence 5899999999999999999999999999999999994 8999999999864 367889999999988865 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.++.............+...+.+.++ .+.+..++.+++. +.+||||||||++|||||+.+|++|||||||++
T Consensus 436 ni~~~~~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~~~~~----~~~LSgGqrQrv~lARal~~~p~illlDEpts~ 509 (587)
T 3qf4_A 436 NLKWGREDATDDEIVEAAKIAQIHDFII--SLPEGYDSRVERG----GRNFSGGQKQRLSIARALVKKPKVLILDDCTSS 509 (587)
T ss_dssp HHTTTCSSCCHHHHHHHHHHTTCHHHHH--TSSSGGGCEECSS----SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTT
T ss_pred HHhccCCCCCHHHHHHHHHHhCcHHHHH--hcccchhhHhcCC----CCCcCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 9987632111000000000111122222 2233445555553 567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+.+...+.+.|+++ . +|+|+|++||++. . ...||+|++|++|++++.|++++++.
T Consensus 510 LD~~~~~~i~~~l~~~-~-~~~tvi~itH~l~-~-~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 510 VDPITEKRILDGLKRY-T-KGCTTFIITQKIP-T-ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp SCHHHHHHHHHHHHHH-S-TTCEEEEEESCHH-H-HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-C-CCCEEEEEecChH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999998 4 4899999999973 4 46899999999999999999998764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=363.16 Aligned_cols=196 Identities=27% Similarity=0.377 Sum_probs=165.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+|||||++.+++. ||+|
T Consensus 360 ~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~e 435 (582)
T 3b5x_A 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIAN 435 (582)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999853 367889999999988875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-------cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-------QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.. . ... .+++.++++.+++.+. .++.+++. ..+||||||||++|||||+.+|++||
T Consensus 436 ni~~~~~-~---~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~----~~~LSgGq~qr~~iAral~~~p~ill 503 (582)
T 3b5x_A 436 NIAYAAE-G---EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN----GTSLSGGQRQRVAIARALLRDAPVLI 503 (582)
T ss_pred HHhccCC-C---CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC----CCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9998631 1 111 1235566777766543 34444543 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||++||+.++..+.+.|+++ .+ |+|+|++||++. .+ ..||++++|++|+++..|++++++
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 504 LDEATSALDTESERAIQAALDEL-QK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred EECccccCCHHHHHHHHHHHHHH-cC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999998 44 899999999973 44 579999999999999999999765
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=366.02 Aligned_cols=196 Identities=27% Similarity=0.394 Sum_probs=164.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+|||||++.+++. ||+|
T Consensus 358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~e 433 (578)
T 4a82_A 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKE 433 (578)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHH
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999864 367789999999988876 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.... .. +.+.++++..++ .+..++.+++. ..+|||||||||+|||||+.+|++||
T Consensus 434 ni~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~----g~~LSgGq~Qrv~lAral~~~p~ill 500 (578)
T 4a82_A 434 NILLGRPTA-----TD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER----GVKLSGGQKQRLSIARIFLNNPPILI 500 (578)
T ss_dssp HHGGGCSSC-----CH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG----GTTSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHhcCCCCC-----CH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC----CCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 998863211 11 123334444443 33455666654 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||++||+.++..+.+.|+++ .+ ++|+|++||++. .+ ..||++++|++|++++.|++++++.
T Consensus 501 lDEpts~LD~~~~~~i~~~l~~~-~~-~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 501 LDEATSALDLESESIIQEALDVL-SK-DRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHH-TT-TSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHH-cC-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999998 43 789999999985 44 5699999999999999999998753
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=364.05 Aligned_cols=197 Identities=27% Similarity=0.389 Sum_probs=165.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+++.+|||||++.+++. ||+|
T Consensus 360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~e 435 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVAN 435 (582)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHH
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHH
Confidence 4799999999999999999999999999999999994 8999999999864 357789999999988875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-------ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++.. .. .. .+++.++++.+++.+ ..++.+++. ..+||||||||++|||||+++|++||
T Consensus 436 ni~~~~~-~~---~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~----~~~LSgGq~qrl~iAral~~~p~ill 503 (582)
T 3b60_A 436 NIAYART-EE---YS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN----GVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_dssp HHHTTTT-SC---CC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT----SCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHhccCC-CC---CC----HHHHHHHHHHcCCHHHHHhccccccccccCC----CCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9998631 11 11 123456666666643 334455543 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||++||+.++..+.+.|+++ .+ |+|+|++||++. .+ +.||++++|++|+++..|++++++.
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 504 LDEATSALDTESERAIQAALDEL-QK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EETTTSSCCHHHHHHHHHHHHHH-HT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHH-hC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999998 44 899999999974 44 5799999999999999999997753
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=364.55 Aligned_cols=196 Identities=26% Similarity=0.343 Sum_probs=162.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+|+.+|||||++.+|+ .||+|
T Consensus 372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~e 447 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKE 447 (598)
T ss_dssp CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHH
T ss_pred cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHH
Confidence 5899999999999999999999999999999999994 8999999999864 36788999999998886 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++...... +.+.++++..++ .+..++.+++. ..+||||||||++|||||+.+|++||
T Consensus 448 ni~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~----g~~LSgGq~Qrv~iAral~~~p~ill 514 (598)
T 3qf4_B 448 NLKYGNPGATD---------EEIKEAAKLTHSDHFIKHLPEGYETVLTDN----GEDLSQGQRQLLAITRAFLANPKILI 514 (598)
T ss_dssp HHHSSSTTCCT---------THHHHHTTTTTCHHHHHTSTTGGGCBCHHH----HTTSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred HHhcCCCCCCH---------HHHHHHHHHhCCHHHHHhccccccchhcCC----CCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99875321110 112333333333 23344444443 34699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||++||+.+...+.+.|+++ .+ |+|+|++||++. .+ ..||+|++|++|+++..|++++++.
T Consensus 515 lDEpts~LD~~~~~~i~~~l~~~-~~-~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 515 LDEATSNVDTKTEKSIQAAMWKL-ME-GKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp ECCCCTTCCHHHHHHHHHHHHHH-HT-TSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred EECCccCCCHHHHHHHHHHHHHH-cC-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999998 43 899999999985 45 5699999999999999999998753
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=329.68 Aligned_cols=184 Identities=27% Similarity=0.416 Sum_probs=147.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|++++|+|||||||||||++|+|+++| ++|+|.++| .++|+||++.+++. ||+||+.
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~enl~- 120 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG---------RISFCSQNSWIMPG-TIKENII- 120 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS---------CEEEECSSCCCCSS-BHHHHHH-
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC---------EEEEEeCCCccCcc-cHHHHhh-
Confidence 479999999999999999999999999999999999 489999988 39999999888875 9999997
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCcc-------CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQ-------HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
+. ... . . .+.++++.+++.+.. ++.++.. +.+|||||||||+|||||+.+|++||||||
T Consensus 121 ~~--~~~-~---~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~~LSgGq~QRv~lAraL~~~p~lllLDEP 186 (290)
T 2bbs_A 121 GV--SYD-E---Y----RYRSVIKACQLEEDISKFAEKDNIVLGEG----GITLSGGQRARISLARAVYKDADLYLLDSP 186 (290)
T ss_dssp TT--CCC-H---H----HHHHHHHHTTCHHHHHTSTTGGGCBC--------CCCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred Cc--ccc-h---H----HHHHHHHHhChHHHHHhccccccchhcCc----cCcCCHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 32 111 0 0 112233444443221 1122211 356999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMM-RELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l-~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++..+++.+ +++ . .|+|||++||++ ..+ ..||++++|++|+++..|++++++
T Consensus 187 ts~LD~~~~~~i~~~ll~~~-~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 187 FGYLDVLTEKEIFESCVCKL-M-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp TTTCCHHHHHHHHHHCCCCC-T-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHh-h-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 9999999999999974 555 3 389999999997 455 569999999999999999998775
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-43 Score=373.61 Aligned_cols=198 Identities=23% Similarity=0.337 Sum_probs=170.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|+|||.+||+||||||||||+++|.|+++|. +|+|.+||.++.. .+|++|+||||++.+|+. |++|
T Consensus 1096 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIre 1171 (1321)
T 4f4c_A 1096 KGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAE 1171 (1321)
T ss_dssp EEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHH
T ss_pred cceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999975 488999999999998875 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.|+... ...+ .+++.++++..++ .+..|+.+|+.+ .+||||||||++|||||+++|+|||
T Consensus 1172 NI~~gld~---~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G----~~LSgGQrQriaiARAllr~~~ILi 1240 (1321)
T 4f4c_A 1172 NIIYGLDP---SSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRG----TQLSGGQKQRIAIARALVRNPKILL 1240 (1321)
T ss_dssp HHSSSSCT---TTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS----CSSCHHHHHHHHHHHHHHSCCSEEE
T ss_pred HHhccCCC---CCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCC----cccCHHHHHHHHHHHHHHhCCCEEE
Confidence 99886321 1111 1234455555544 566888999864 4599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||||+||+.+...|.+.|+++ . .|+|+|+|+|+++ ....||+|++|++|+|++.|++++++.
T Consensus 1241 LDEaTSaLD~~tE~~Iq~~l~~~-~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1241 LDEATSALDTESEKVVQEALDRA-R-EGRTCIVIAHRLN--TVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EESCCCSTTSHHHHHHHHHHTTT-S-SSSEEEEECSSSS--TTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred EeCccccCCHHHHHHHHHHHHHH-c-CCCEEEEeccCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999887 3 4899999999985 357799999999999999999998764
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=368.10 Aligned_cols=195 Identities=25% Similarity=0.323 Sum_probs=168.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++|+.+||+||||||||||+++|.|+++|. +|+|.+||.++.. .+|++||||+|++.+|.. |++|
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~e 510 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEE 510 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHH
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhH
Confidence 4899999999999999999999999999999999994 8999999999975 478899999999988865 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.|+.... +. +++.++++..+ |++..++.+|+.+. .||||||||++||||++++|+|||
T Consensus 511 NI~~g~~~~-----~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~----~LSGGQkQRiaiARAl~~~~~Ili 577 (1321)
T 4f4c_A 511 NISLGKEGI-----TR----EEMVAACKMANAEKFIKTLPNGYNTLVGDRGT----QLSGGQKQRIAIARALVRNPKILL 577 (1321)
T ss_dssp HHHTTCTTC-----CH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSC----CCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHhhhcccc-----hH----HHHHHHHHHccchhHHHcCCCCCccEecCCCC----CCCHHHHHHHHHHHHHccCCCEEE
Confidence 999874211 11 12333444333 46678899998654 599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||||||+||+.+...+.+.|.++. +|+|+|++||++. ..+.||+|++|++|+|+..|+.++++
T Consensus 578 LDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 578 LDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred EecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHH
Confidence 999999999999999999999984 3899999999984 46889999999999999999999876
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=338.12 Aligned_cols=187 Identities=25% Similarity=0.302 Sum_probs=160.8
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
+||++.+||+++|+|||||||||||++|+|+++|+ +|+|.+ ...+||+||+..+++.+||.|++.+..
T Consensus 375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~---------~~~i~~v~Q~~~~~~~~tv~e~~~~~~ 442 (607)
T 3bk7_A 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW---------DLTVAYKPQYIKAEYEGTVYELLSKID 442 (607)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC---------CCCEEEECSSCCCCCSSBHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE---------eeEEEEEecCccCCCCCcHHHHHHhhh
Confidence 45668999999999999999999999999999994 799976 246999999987778899999886641
Q ss_pred HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHH
Q psy2520 86 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 165 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 165 (290)
... . ...+.+.++++.+++.+..++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 443 ~~~----~---~~~~~~~~~l~~~~l~~~~~~~~--------~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~ 507 (607)
T 3bk7_A 443 SSK----L---NSNFYKTELLKPLGIIDLYDRNV--------EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 507 (607)
T ss_dssp HHH----H---HCHHHHHHTHHHHTCTTTTTSBG--------GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred ccC----C---CHHHHHHHHHHHcCCchHhcCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHH
Confidence 110 0 11244678999999998889884 44999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC--CeEEEEcCHHHHHH
Q psy2520 166 SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFIGSKDAALA 220 (290)
Q Consensus 166 ~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~~ 220 (290)
..++++|++++++.|.|||+||||+ .++..+|||+++|++ |+++..|++++++.
T Consensus 508 ~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 508 LAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999655689999999997 578899999999986 88888999988764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-42 Score=364.03 Aligned_cols=203 Identities=23% Similarity=0.321 Sum_probs=165.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++||++||+||||||||||+++|+|+++|+ +|+|.++|.++.. .+|+.||||+|++.+++. ||+|
T Consensus 407 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~e 482 (1284)
T 3g5u_A 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAE 482 (1284)
T ss_dssp EEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHH
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHH
Confidence 4899999999999999999999999999999999994 8999999999864 367889999999998876 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
|+.|+.............+...+.+.++. +.+..++.+++. ..+|||||||||+|||||+.+|+||||||||++
T Consensus 483 Ni~~g~~~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~----g~~LSgGq~QriaiARal~~~p~iliLDEpts~ 556 (1284)
T 3g5u_A 483 NIRYGREDVTMDEIEKAVKEANAYDFIMK--LPHQFDTLVGER----GAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556 (1284)
T ss_dssp HHHHHCSSCCHHHHHHHHHHTTCHHHHHH--STTGGGCCCSSS----SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCS
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHh--ccccccccccCC----CCccCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 99987421111111111111112233333 344566777764 456999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||+.+...+.+.++.+ . .|+|+|++||++. .+ ..||+|++|++|++++.|++++++.
T Consensus 557 LD~~~~~~i~~~l~~~-~-~~~t~i~itH~l~-~i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 557 LDTESEAVVQAALDKA-R-EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp SCHHHHHHHHHHHHHH-H-TTSEEEEECSCHH-HH-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-c-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999887 3 3899999999973 45 5699999999999999999998764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=334.42 Aligned_cols=187 Identities=25% Similarity=0.299 Sum_probs=159.3
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
+||++.+||+++|+||||||||||+++|+|+++|. +|+|.+ ...+||+||+....+.+||.|++....
T Consensus 305 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~---------~~~i~~v~Q~~~~~~~~tv~~~~~~~~ 372 (538)
T 1yqt_A 305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW---------DLTVAYKPQYIKADYEGTVYELLSKID 372 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC---------CCCEEEECSSCCCCCSSBHHHHHHHHH
T ss_pred CccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE---------CceEEEEecCCcCCCCCcHHHHHHhhh
Confidence 45667999999999999999999999999999994 799975 236999999987778899988876531
Q ss_pred HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHH
Q psy2520 86 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 165 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 165 (290)
... .. ..+.+.++++.+++.+..++++ .+|||||||||+|||+|+.+|++|||||||+|||+.++
T Consensus 373 ~~~----~~---~~~~~~~~l~~~~l~~~~~~~~--------~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~ 437 (538)
T 1yqt_A 373 ASK----LN---SNFYKTELLKPLGIIDLYDREV--------NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 437 (538)
T ss_dssp HHH----HT---CHHHHHHTTTTTTCGGGTTSBG--------GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred ccC----CC---HHHHHHHHHHHcCChhhhcCCh--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 110 00 1234678899999988888884 45999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC--CeEEEEcCHHHHHH
Q psy2520 166 SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFIGSKDAALA 220 (290)
Q Consensus 166 ~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~~ 220 (290)
..++++|++++++.|.|||+||||+ .++..+|||+++|++ |+++..|++++++.
T Consensus 438 ~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 438 LAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999998555689999999997 578899999999986 78888999987764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=361.62 Aligned_cols=198 Identities=24% Similarity=0.364 Sum_probs=164.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.|+||++++||++||+||||||||||+++|+|+++|. +|+|.++|+++.. .+|+.++||||++.+++ .||+|
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~e 1125 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAE 1125 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHH
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHH
Confidence 4899999999999999999999999999999999994 8999999999864 36788999999997775 69999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc-------CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL-------GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++...... ... .+.+.++.. .+.+..++.+++. ..+|||||||||+|||||+.+|++||
T Consensus 1126 Ni~~~~~~~~~---~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~----G~~LSgGq~Qrv~iARal~~~p~iLi 1194 (1284)
T 3g5u_A 1126 NIAYGDNSRVV---SYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDK----GTQLSGGQKQRIAIARALVRQPHILL 1194 (1284)
T ss_dssp HHTCCCSSCCC---CHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTT----SCSSCHHHHHHHHHHHHHHHCCSSEE
T ss_pred HHhccCCCCCC---CHH----HHHHHHHHhCcHHHHHhCccccccccCCC----CCccCHHHHHHHHHHHHHHcCCCEEE
Confidence 99876422111 111 112223332 2345667777774 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||++||+.+...+.+.|++. . .|+|+|++||++. .+ ..||||++|++|+++..|++++++.
T Consensus 1195 LDEpTs~lD~~~~~~i~~~l~~~-~-~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1195 LDEATSALDTESEKVVQEALDKA-R-EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp EESCSSSCCHHHHHHHHHHHHHH-S-SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHh-C-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999886 4 4899999999985 45 5699999999999999999998763
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=330.13 Aligned_cols=186 Identities=22% Similarity=0.278 Sum_probs=156.7
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 86 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~ 86 (290)
||++++||+++|+||||||||||+++|+|+++|+ +|+|.+++ +.++|++|+....+.+||++|+.+...
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~--------~~i~~~~q~~~~~~~~tv~~~l~~~~~ 356 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK--------QILSYKPQRIFPNYDGTVQQYLENASK 356 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC--------CCEEEECSSCCCCCSSBHHHHHHHHCS
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC--------eeeEeechhcccccCCCHHHHHHHhhh
Confidence 5678999999999999999999999999999994 89999765 358999998766678899999987421
Q ss_pred hcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHH
Q psy2520 87 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSAS 166 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 166 (290)
... .. ....+.++++.+++.+..++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 357 ~~~-~~-----~~~~~~~~l~~~~l~~~~~~~~--------~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~ 422 (538)
T 3ozx_A 357 DAL-ST-----SSWFFEEVTKRLNLHRLLESNV--------NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERY 422 (538)
T ss_dssp STT-CT-----TSHHHHHTTTTTTGGGCTTSBG--------GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred hcc-ch-----hHHHHHHHHHHcCCHHHhcCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 110 01 1123578899999998889884 459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC--CeEEEEcCHHHH
Q psy2520 167 KLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFIGSKDAA 218 (290)
Q Consensus 167 ~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~--G~i~~~g~~~~~ 218 (290)
.++++|++++++.|.|||+||||+ .++..+||||++|++ |.....+++.++
T Consensus 423 ~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 423 IVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 999999999666799999999997 578899999999986 556666666543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=328.37 Aligned_cols=189 Identities=22% Similarity=0.257 Sum_probs=159.4
Q ss_pred cceEEEEeCC-----eEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSG-----TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~G-----e~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.++||++.+| |+++|+|||||||||||++|+|+++|+ +|+. + .+..++|++|+.......||+
T Consensus 364 ~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~---~~~~i~~~~q~~~~~~~~tv~ 431 (608)
T 3j16_B 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I---PKLNVSMKPQKIAPKFPGTVR 431 (608)
T ss_dssp SSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C---CSCCEEEECSSCCCCCCSBHH
T ss_pred CceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c---cCCcEEEecccccccCCccHH
Confidence 3789999988 789999999999999999999999994 6862 1 134699999987666667999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
+++... .+... .. ...+.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+
T Consensus 432 e~~~~~--~~~~~-~~----~~~~~~~l~~l~l~~~~~~~--------~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 432 QLFFKK--IRGQF-LN----PQFQTDVVKPLRIDDIIDQE--------VQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp HHHHHH--CSSTT-TS----HHHHHHTHHHHTSTTTSSSB--------SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHHHH--hhccc-cc----HHHHHHHHHHcCChhhhcCC--------hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 987542 11111 11 13356789999999999998 55599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC--CeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~--G~i~~~g~~~~~~~ 220 (290)
|||+.++..++++|++++++.|.|||+||||+ .++..+|||+++|++ |+++..|+|++++.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 99999999999999998655689999999997 588899999999996 89999999988764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-40 Score=328.88 Aligned_cols=205 Identities=24% Similarity=0.296 Sum_probs=136.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHH---------------------HHHHcCCCCCCC----CccEEEECCEecCccc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLL---------------------AALSQRLPDDCI----IDGDIRVNGKPVEGKF 58 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl---------------------~~l~G~~~~~~~----~~G~I~i~G~~~~~~~ 58 (290)
.||||++++||+++|+||||||||||+ +++.|+..|+.. ..|.|.++|.+.....
T Consensus 35 ~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~ 114 (670)
T 3ux8_A 35 KNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNP 114 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----
T ss_pred eccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccc
Confidence 589999999999999999999999998 888888887410 1466777776654333
Q ss_pred cccEEEEccCCC-------------------CCCCCCHHHHHHHHHHhcCchhhhH--HH---HHHHHHHHHHHcCCCCc
Q psy2520 59 RSACGFMYQHDL-------------------FSPSLTVYEHLYFMALLKLDRRVKA--YQ---RIALINSLLIELGLMNS 114 (290)
Q Consensus 59 ~~~ig~v~Q~~~-------------------~~~~lTv~e~l~~~~~~~~~~~~~~--~~---~~~~~~~~l~~~~l~~~ 114 (290)
+..+|+++|... .++.+||+||+.+............ .. ......++++.+||.+.
T Consensus 115 ~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 194 (670)
T 3ux8_A 115 RSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYL 194 (670)
T ss_dssp CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCTTC
T ss_pred hhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 445566655432 2467899999987532211110000 00 00112246888999765
Q ss_pred -cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 115 -QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 115 -~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
.++++ .+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|++++ +.|.|||+||||+
T Consensus 195 ~~~~~~--------~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~-~~g~tvi~vtHd~- 264 (670)
T 3ux8_A 195 TLSRSA--------GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLIVVEHDE- 264 (670)
T ss_dssp CTTCBG--------GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-HTTCEEEEECCCH-
T ss_pred hhcCCc--------ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCH-
Confidence 57774 4599999999999999999998 999999999999999999999999995 4599999999997
Q ss_pred HHHHhhcCeEEEE------eCCeEEEEcCHHHHH
Q psy2520 192 SELIDMFDKIILL------ADSRTAFIGSKDAAL 219 (290)
Q Consensus 192 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~ 219 (290)
.. ...||++++| ++|++++.|+++++.
T Consensus 265 ~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 265 DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 34 4579999999 899999999998875
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-39 Score=315.34 Aligned_cols=178 Identities=26% Similarity=0.274 Sum_probs=146.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEE---------EECCEecCc------cccccEEEEccC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI---------RVNGKPVEG------KFRSACGFMYQH 68 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I---------~i~G~~~~~------~~~~~ig~v~Q~ 68 (290)
.++| .+++||+++|+||||||||||||+|+|+++|+ +|++ .++|.++.. ..+..+++++|.
T Consensus 39 ~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~ 114 (538)
T 1yqt_A 39 YRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY 114 (538)
T ss_dssp ECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSC
T ss_pred cCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhh
Confidence 4677 88999999999999999999999999999985 6885 456765432 123458899997
Q ss_pred CCCCCC---CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH
Q psy2520 69 DLFSPS---LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 145 (290)
Q Consensus 69 ~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~ 145 (290)
..+++. .|+.|++... .. .+++.++++.+|+.+..++++ .+|||||||||+||+||+
T Consensus 115 ~~~~~~~~~~~v~e~~~~~---~~---------~~~~~~~l~~lgl~~~~~~~~--------~~LSgGekQRv~iAraL~ 174 (538)
T 1yqt_A 115 VDLIPKAVKGKVIELLKKA---DE---------TGKLEEVVKALELENVLEREI--------QHLSGGELQRVAIAAALL 174 (538)
T ss_dssp GGGSGGGCCSBHHHHHHHH---CS---------SSCHHHHHHHTTCTTTTTSBG--------GGCCHHHHHHHHHHHHHH
T ss_pred hhhcchhhhccHHHHHhhh---hH---------HHHHHHHHHHcCCChhhhCCh--------hhCCHHHHHHHHHHHHHh
Confidence 443332 3888887531 10 123568999999998888884 459999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCC
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 207 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G 207 (290)
.+|++|||||||++||+.++..++++|+++++ .|.|||+||||+ .++..+||+|++|.+|
T Consensus 175 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~-~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 175 RNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDL-AVLDYLSDIIHVVYGE 234 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHHHHHCSEEEEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999955 599999999997 5788899999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=318.52 Aligned_cols=178 Identities=26% Similarity=0.295 Sum_probs=146.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEE---------EECCEecCc------cccccEEEEccC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI---------RVNGKPVEG------KFRSACGFMYQH 68 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I---------~i~G~~~~~------~~~~~ig~v~Q~ 68 (290)
.++| .+++||+++|+|||||||||||++|+|+++|+ +|++ .++|.++.. ..+..+++++|.
T Consensus 109 ~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 109 YRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp ECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred CCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 4677 78999999999999999999999999999995 6885 456765532 123458899986
Q ss_pred CCCCC---CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH
Q psy2520 69 DLFSP---SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 145 (290)
Q Consensus 69 ~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~ 145 (290)
..+++ ..||.|++... .. .+++.++++.+||.+..++.+ .+|||||||||+|||||+
T Consensus 185 ~~~~~~~~~~tv~e~l~~~----~~--------~~~~~~~L~~lgL~~~~~~~~--------~~LSGGekQRvaIAraL~ 244 (607)
T 3bk7_A 185 VDLLPKAVKGKVRELLKKV----DE--------VGKFEEVVKELELENVLDREL--------HQLSGGELQRVAIAAALL 244 (607)
T ss_dssp GGGGGGTCCSBHHHHHHHT----CC--------SSCHHHHHHHTTCTTGGGSBG--------GGCCHHHHHHHHHHHHHH
T ss_pred hhhchhhccccHHHHhhhh----HH--------HHHHHHHHHHcCCCchhCCCh--------hhCCHHHHHHHHHHHHHh
Confidence 43222 23899988531 00 123568999999999999884 459999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCC
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 207 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G 207 (290)
.+|++|||||||++||+.++..++++|+++++ .|.|||+||||+ .++..+||+|++|+++
T Consensus 245 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl-~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 245 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDL-AVLDYLSDVIHVVYGE 304 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHHHHHCSEEEEEESC
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecCh-HHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999954 589999999997 5788899999999865
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=310.22 Aligned_cols=192 Identities=29% Similarity=0.367 Sum_probs=145.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHH----------------------cCCCCCCCCccEEEECCEecCccc---
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALS----------------------QRLPDDCIIDGDIRVNGKPVEGKF--- 58 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~----------------------G~~~~~~~~~G~I~i~G~~~~~~~--- 58 (290)
.||||+|++||+++|+||||||||||+++|+ |+..+ .|.|.++|.++....
T Consensus 339 ~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 339 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSSTTCC
T ss_pred ccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCCCCcc
Confidence 5899999999999999999999999998754 33333 467888887763200
Q ss_pred ------------------------------------------cccEEEEccCCCCCC-----------------------
Q psy2520 59 ------------------------------------------RSACGFMYQHDLFSP----------------------- 73 (290)
Q Consensus 59 ------------------------------------------~~~ig~v~Q~~~~~~----------------------- 73 (290)
....|+++|+..+++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 011244444333222
Q ss_pred ---------CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHH
Q psy2520 74 ---------SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATE 143 (290)
Q Consensus 74 ---------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~a 143 (290)
.+||.||+.|.... .. .+++.+.+..+++.. ..+++ +.+|||||||||+||||
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~------~~---~~~~~~~l~~~~l~~~~~~~~--------~~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASI------PK---IKRKLETLYDVGLGYMKLGQP--------ATTLSGGEAQRVKLAAE 557 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTC------HH---HHHHHHHHHHTTCTTSBTTCC--------GGGCCHHHHHHHHHHHH
T ss_pred cCCCHHHHhhCCHHHHHHHHHHh------hh---HHHHHHHHHHcCCchhhccCC--------chhCCHHHHHHHHHHHH
Confidence 47899998875321 11 123457788899864 45666 44599999999999999
Q ss_pred HHhCCC---eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcC
Q psy2520 144 LLTDPA---LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGS 214 (290)
Q Consensus 144 L~~~p~---llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~ 214 (290)
|+.+|+ +|||||||+|||+.++..++++|++++ +.|.|||+||||+. . ...||||++| ++|++++.|+
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~-~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~ 634 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV-DNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGT 634 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEEC
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecC
Confidence 999874 999999999999999999999999995 45999999999973 4 4789999999 8999999999
Q ss_pred HHHHH
Q psy2520 215 KDAAL 219 (290)
Q Consensus 215 ~~~~~ 219 (290)
++++.
T Consensus 635 ~~~~~ 639 (670)
T 3ux8_A 635 PEEVA 639 (670)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99764
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=316.12 Aligned_cols=181 Identities=23% Similarity=0.299 Sum_probs=150.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCC-CCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD-LFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~-~~~~~lTv~e~l~ 82 (290)
.|+||++++|++++|+||||||||||||+|+| |+| +|.+.... ..++|++|+. .+++.+||.||+.
T Consensus 452 ~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~~--~~~~~v~q~~~~~~~~ltv~e~l~ 518 (986)
T 2iw3_A 452 NKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQEE--CRTVYVEHDIDGTHSDTSVLDFVF 518 (986)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTTT--SCEEETTCCCCCCCTTSBHHHHHH
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccccc--eeEEEEcccccccccCCcHHHHHH
Confidence 47999999999999999999999999999995 222 34332211 2378999874 6788999999997
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
+ .... . .+++.++++.+|+. +..+++++ +|||||||||+|||||+.+|++|||||||++||
T Consensus 519 ~--~~~~---~-----~~~v~~~L~~lgL~~~~~~~~~~--------~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD 580 (986)
T 2iw3_A 519 E--SGVG---T-----KEAIKDKLIEFGFTDEMIAMPIS--------ALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580 (986)
T ss_dssp T--TCSS---C-----HHHHHHHHHHTTCCHHHHHSBGG--------GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCC
T ss_pred H--hhcC---H-----HHHHHHHHHHcCCChhhhcCCcc--------cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCC
Confidence 5 1111 1 34567899999995 56777744 499999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE-EEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 220 (290)
+.++..++++|++ .|.|||++|||+ .++..+||++++|++|+++ +.|++++++.
T Consensus 581 ~~~~~~l~~~L~~----~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 581 TVNVAWLVNYLNT----CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHHHHHHHH----SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHh----CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999987 388999999997 5788999999999999997 6899987653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=302.23 Aligned_cols=173 Identities=25% Similarity=0.308 Sum_probs=138.6
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEE-----------EECCEecCcc----c--cccEEEEccC----
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI-----------RVNGKPVEGK----F--RSACGFMYQH---- 68 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I-----------~i~G~~~~~~----~--~~~ig~v~Q~---- 68 (290)
.++||++||+||||||||||+|+|+|+++|+ +|+| .++|+++... . ...+...+|.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 4689999999999999999999999999995 7998 6777765321 1 1234444443
Q ss_pred CCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 69 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
+.++ ..||.+++... .. .+++.++++.+++.+..++.+. +|||||||||+||+||+.+|
T Consensus 99 ~~~~-~~~v~~~l~~~---~~---------~~~~~~~l~~l~l~~~~~~~~~--------~LSgGe~Qrv~iA~aL~~~p 157 (538)
T 3ozx_A 99 SKFL-KGTVNEILTKI---DE---------RGKKDEVKELLNMTNLWNKDAN--------ILSGGGLQRLLVAASLLREA 157 (538)
T ss_dssp GTTC-CSBHHHHHHHH---CC---------SSCHHHHHHHTTCGGGTTSBGG--------GCCHHHHHHHHHHHHHHSCC
T ss_pred hhhc-cCcHHHHhhcc---hh---------HHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHHcCC
Confidence 2222 34787765321 10 1235678999999999999844 49999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
++|||||||++||+.++..++++|+++ ++ |+|||+|||++ .++..+||+|++|++|..
T Consensus 158 ~illlDEPts~LD~~~~~~l~~~l~~l-~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 158 DVYIFDQPSSYLDVRERMNMAKAIREL-LK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHH-CT-TSEEEEECSCH-HHHHHHCSEEEEEEEETT
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHH-hC-CCEEEEEEeCh-HHHHhhCCEEEEecCCcc
Confidence 999999999999999999999999999 55 89999999997 588999999999987543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=312.65 Aligned_cols=188 Identities=24% Similarity=0.303 Sum_probs=147.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCC----CCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF----SPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~----~~~lTv~e 79 (290)
.|+||++++|++++|+||||||||||+|+|+|+++|+ +|+|+++|. ..+||++|++.. ....|+.+
T Consensus 690 ~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~-------~~I~yv~Q~~~~~l~~~~~~t~~e 759 (986)
T 2iw3_A 690 TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN-------CRIAYIKQHAFAHIESHLDKTPSE 759 (986)
T ss_dssp EEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT-------CCEEEECHHHHHHGGGCTTSCHHH
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc-------cceEeeccchhhhhhcccccCHHH
Confidence 4799999999999999999999999999999999994 899999863 248999997421 23457888
Q ss_pred HHHHHHHhc----------------------------------------------------------------C------
Q psy2520 80 HLYFMALLK----------------------------------------------------------------L------ 89 (290)
Q Consensus 80 ~l~~~~~~~----------------------------------------------------------------~------ 89 (290)
++.+..... .
T Consensus 760 ~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~ 839 (986)
T 2iw3_A 760 YIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMS 839 (986)
T ss_dssp HHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCG
T ss_pred HHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccch
Confidence 776532100 0
Q ss_pred ------chh-hhH---------------------HHHHHHHHHHHHHcCCCC-c-cCcccCCcCCCCCCCCChHHHHHHH
Q psy2520 90 ------DRR-VKA---------------------YQRIALINSLLIELGLMN-S-QHTRIGSSSITQKVVLSGGERKRLS 139 (290)
Q Consensus 90 ------~~~-~~~---------------------~~~~~~~~~~l~~~~l~~-~-~~~~v~~~~~~~~~~LSgGqrqRv~ 139 (290)
+.. ... ....+++.++++.+||.. . .+++ +.+|||||||||+
T Consensus 840 ~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~--------~~~LSGGQkQRVa 911 (986)
T 2iw3_A 840 VDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSR--------IRGLSGGQKVKLV 911 (986)
T ss_dssp GGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSC--------GGGCCHHHHHHHH
T ss_pred hhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCC--------ccccCHHHHHHHH
Confidence 000 000 001245788999999975 3 4666 3459999999999
Q ss_pred HHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 140 FATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 140 ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
|||+|+.+|++|||||||+|||+.+...+++.|+++ +.|||++|||+ .++..+||++++|++|+++..|+
T Consensus 912 LArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~-e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 912 LAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSA-EFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCH-HHHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999888654 56999999996 57888999999999999987764
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=297.39 Aligned_cols=180 Identities=22% Similarity=0.284 Sum_probs=137.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEE-----------EECCEecCc----cccccE--EEEccCCCC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI-----------RVNGKPVEG----KFRSAC--GFMYQHDLF 71 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I-----------~i~G~~~~~----~~~~~i--g~v~Q~~~~ 71 (290)
.+++||+++|+||||||||||||+|+|+++|+ +|+| ++.|.++.. ...+.+ .+.+|....
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDN 175 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhh
Confidence 45789999999999999999999999999995 7987 344433321 011122 233332111
Q ss_pred ------CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH
Q psy2520 72 ------SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 145 (290)
Q Consensus 72 ------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~ 145 (290)
.+..++.+++... .. ...+++.++++.++|.+..++. +.+|||||||||+||+||+
T Consensus 176 ~~~~~~~~~~~v~~~l~~~----~~------~~~~~~~~~l~~~gl~~~~~~~--------~~~LSgGe~Qrv~iAraL~ 237 (608)
T 3j16_B 176 IPRAIKGPVQKVGELLKLR----ME------KSPEDVKRYIKILQLENVLKRD--------IEKLSGGELQRFAIGMSCV 237 (608)
T ss_dssp HHHHCSSSSSHHHHHHHHH----CC------SCHHHHHHHHHHHTCTGGGGSC--------TTTCCHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHHHHHhhh----hh------hHHHHHHHHHHHcCCcchhCCC--------hHHCCHHHHHHHHHHHHHH
Confidence 1122455444321 00 0123567899999999999998 5559999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
.+|++|||||||++||+.++..++++|+++ .+.|.|||+|||++ .++..+||++++|++|..++
T Consensus 238 ~~p~llllDEPts~LD~~~~~~l~~~l~~l-~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSL-LAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHGG-GTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTE
T ss_pred hCCCEEEEECcccCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999999999999 45689999999997 58889999999999876544
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=288.44 Aligned_cols=196 Identities=28% Similarity=0.376 Sum_probs=149.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHH---------HHHHcCCCCCC---CCc------cEEEECCEecCcc--------
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLL---------AALSQRLPDDC---IID------GDIRVNGKPVEGK-------- 57 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl---------~~l~G~~~~~~---~~~------G~I~i~G~~~~~~-------- 57 (290)
.||||++++|++++|+||||||||||+ +.+.+...+.. ..+ +.+.+++.++...
T Consensus 601 k~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~ 680 (916)
T 3pih_A 601 KNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATY 680 (916)
T ss_dssp CSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHH
T ss_pred cccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccch
Confidence 589999999999999999999999997 44554433211 012 2355555443210
Q ss_pred -------------------------------------ccccEEEEccCCCCCCC--------------------------
Q psy2520 58 -------------------------------------FRSACGFMYQHDLFSPS-------------------------- 74 (290)
Q Consensus 58 -------------------------------------~~~~ig~v~Q~~~~~~~-------------------------- 74 (290)
..+..|+++++..+++.
T Consensus 681 ~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~ 760 (916)
T 3pih_A 681 TKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKN 760 (916)
T ss_dssp SSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBC
T ss_pred hhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCC
Confidence 01235788877666553
Q ss_pred ------CCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC
Q psy2520 75 ------LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTD 147 (290)
Q Consensus 75 ------lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 147 (290)
+||.|++.|+... . ...++.++|+.+||... .+++ +.+|||||||||+|||+|+.+
T Consensus 761 i~~vl~~tv~eal~f~~~~------~---~~~~~~~~L~~vGL~~~~lgq~--------~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 761 ISDILDMTVDEALEFFKNI------P---SIKRTLQVLHDVGLGYVKLGQP--------ATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp HHHHHSSBHHHHHHHTTTC------H---HHHHHHHHHHHTTGGGSBTTCC--------STTCCHHHHHHHHHHHHHTSC
T ss_pred HHHHhhCCHHHHHHHHhcc------h---hHHHHHHHHHHcCCchhhccCC--------ccCCCHHHHHHHHHHHHHhhC
Confidence 6788888775321 1 12345688999999653 3555 456999999999999999987
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHH
Q psy2520 148 P---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAA 218 (290)
Q Consensus 148 p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 218 (290)
| ++|||||||+|||+.++..+++.|++++ +.|.|||+|+|++ +. ...||+|++| ++|++++.|+++++
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~-~~G~TVIvI~HdL-~~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel 900 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLV-DRGNTVIVIEHNL-DV-IKNADHIIDLGPEGGKEGGYIVATGTPEEI 900 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEESHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCH-HH-HHhCCEEEEecCCCCCCCCEEEEEcCHHHH
Confidence 6 7999999999999999999999999994 4599999999997 34 4669999999 89999999999987
Q ss_pred H
Q psy2520 219 L 219 (290)
Q Consensus 219 ~ 219 (290)
+
T Consensus 901 ~ 901 (916)
T 3pih_A 901 A 901 (916)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=293.17 Aligned_cols=196 Identities=30% Similarity=0.395 Sum_probs=149.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHH-cCC---------CCCC--CCcc------EEEECCEecCccc-------
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALS-QRL---------PDDC--IIDG------DIRVNGKPVEGKF------- 58 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~-G~~---------~~~~--~~~G------~I~i~G~~~~~~~------- 58 (290)
.||||+|++|++++|+|+||||||||+++|+ |.+ .+.. ...| .|.++|.++....
T Consensus 641 k~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty 720 (972)
T 2r6f_A 641 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATY 720 (972)
T ss_dssp CSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHH
T ss_pred ccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhh
Confidence 5899999999999999999999999999853 211 2210 0123 4888888763210
Q ss_pred ----------------cccEEEEccCCCCC----------------------C---------------------------
Q psy2520 59 ----------------RSACGFMYQHDLFS----------------------P--------------------------- 73 (290)
Q Consensus 59 ----------------~~~ig~v~Q~~~~~----------------------~--------------------------- 73 (290)
.+.+||++|...+. +
T Consensus 721 ~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~s 800 (972)
T 2r6f_A 721 TGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKN 800 (972)
T ss_dssp HTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBC
T ss_pred hhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCC
Confidence 13357777743221 1
Q ss_pred -----CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC
Q psy2520 74 -----SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 147 (290)
Q Consensus 74 -----~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 147 (290)
.+||.|++.|+... .. ..++.++++.+||.. ..++. +.+|||||||||+||++|+.+
T Consensus 801 I~dvl~ltv~e~l~~~~~~------~~---~~~~~~~L~~~gL~~~~l~~~--------~~~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 801 IAEVLDMTVEDALDFFASI------PK---IKRKLETLYDVGLGYMKLGQP--------ATTLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp HHHHHTSBHHHHHHHTCSC------HH---HHHHHHHHHHTTCSSSBTTCC--------GGGCCHHHHHHHHHHHHHSSC
T ss_pred HHHhhhcCHHHHHHHHhcc------hh---HHHHHHHHHHcCCCcccccCc--------hhhCCHHHHHHHHHHHHHhcC
Confidence 35778887764211 11 123467899999987 66777 445999999999999999986
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHH
Q psy2520 148 P---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAA 218 (290)
Q Consensus 148 p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 218 (290)
| ++|||||||+|||+.++..++++|++++ +.|.|||++||++ .+ ...||+|++| ++|++++.|+++++
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~-~~G~TVIvisHdl-~~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el 940 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLV-DNGDTVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECCCH-HH-HTTCSEEEEECSSSTTSCCSEEEEESHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEcCCH-HH-HHhCCEEEEEcCCCCCCCCEEEEecCHHHH
Confidence 5 9999999999999999999999999995 4699999999997 34 4689999999 78999999999976
Q ss_pred H
Q psy2520 219 L 219 (290)
Q Consensus 219 ~ 219 (290)
.
T Consensus 941 ~ 941 (972)
T 2r6f_A 941 A 941 (972)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-34 Score=289.69 Aligned_cols=109 Identities=28% Similarity=0.323 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2520 100 ALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTD---PALLLCDEPTTGLDSFSASKLIRMMREL 175 (290)
Q Consensus 100 ~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~---p~llllDEPtsgLD~~~~~~i~~~l~~l 175 (290)
+++.++|+.++|... .++. +..|||||||||+||++|+.+ |++|||||||+|||+..+..++++|+++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~--------~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 779 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP--------ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL 779 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC--------GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCC--------cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 356789999999773 5676 445999999999999999996 7999999999999999999999999999
Q ss_pred HhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHHH
Q psy2520 176 TSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 219 (290)
Q Consensus 176 ~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~ 219 (290)
+ +.|.|||++|||+ .++ ..||+|++| ++|++++.|++++++
T Consensus 780 ~-~~G~tVIvisHdl-~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 780 V-DAGNTVIAVEHKM-QVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp H-HTTCEEEEECCCH-HHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred H-hCCCEEEEEcCCH-HHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 5 4599999999997 456 889999999 799999999999764
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=258.51 Aligned_cols=204 Identities=20% Similarity=0.253 Sum_probs=141.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-----------------------------------CCCccEEE
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDD-----------------------------------CIIDGDIR 48 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~-----------------------------------~~~~G~I~ 48 (290)
.++||.+.+| +++|+|||||||||||++|+++..+. ...+|+++
T Consensus 52 ~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~i~ 130 (415)
T 4aby_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAAR 130 (415)
T ss_dssp EEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEEEE
T ss_pred eeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceEEE
Confidence 4789999999 99999999999999999998776421 01268899
Q ss_pred ECCEecCc----cc-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCch--------------------------------
Q psy2520 49 VNGKPVEG----KF-RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-------------------------------- 91 (290)
Q Consensus 49 i~G~~~~~----~~-~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~-------------------------------- 91 (290)
+||+++.. .+ +..+++++|++.++.. +..+...|.-......
T Consensus 131 ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~ 209 (415)
T 4aby_A 131 LSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPTS 209 (415)
T ss_dssp ETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcc
Confidence 99999864 22 3348999998755432 4444444321110000
Q ss_pred -------------------hh------hHHHHHHHHHHHHHHcCCCCcc----------------Cc---ccCCcC---C
Q psy2520 92 -------------------RV------KAYQRIALINSLLIELGLMNSQ----------------HT---RIGSSS---I 124 (290)
Q Consensus 92 -------------------~~------~~~~~~~~~~~~l~~~~l~~~~----------------~~---~v~~~~---~ 124 (290)
.. ........+.+.++.+++.... ++ .+.... .
T Consensus 210 i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 289 (415)
T 4aby_A 210 LVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEEL 289 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCcc
Confidence 00 0000112344455556554310 00 010000 0
Q ss_pred CCCCC-CChHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE
Q psy2520 125 TQKVV-LSGGERKRLSFATELLTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 201 (290)
Q Consensus 125 ~~~~~-LSgGqrqRv~ia~aL~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v 201 (290)
..+.. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++ . +|.|||+|||++ ++...||++
T Consensus 290 ~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l-~-~~~~vi~itH~~--~~~~~~d~i 365 (415)
T 4aby_A 290 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL-A-DTRQVLVVTHLA--QIAARAHHH 365 (415)
T ss_dssp CBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHH-T-TTSEEEEECSCH--HHHTTCSEE
T ss_pred cchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-h-CCCEEEEEeCcH--HHHhhcCeE
Confidence 00112 6999999999999999999 999999999999999999999999999 4 489999999996 456889999
Q ss_pred EEE----eCCeEEEEc
Q psy2520 202 ILL----ADSRTAFIG 213 (290)
Q Consensus 202 ~~l----~~G~i~~~g 213 (290)
++| .+|+++...
T Consensus 366 ~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 366 YKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred EEEEEeccCCceEEEE
Confidence 999 999987653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=290.69 Aligned_cols=185 Identities=14% Similarity=0.088 Sum_probs=146.1
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCcc-E-EEECCEecCccccccEEEEccCCC---CCCCCCHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG-D-IRVNGKPVEGKFRSACGFMYQHDL---FSPSLTVYE 79 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G-~-I~i~G~~~~~~~~~~ig~v~Q~~~---~~~~lTv~e 79 (290)
++||.+++|++++|+||||||||||+|+|+|+.+| .+| + |+++|. .++.++|+||+.. +.+.+||+|
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p---~~G~~pI~vdg~-----~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK---FNAYQPLYINLD-----PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH---HHCCCCEEEECC-----TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc---cCCceeEEEcCC-----ccCCeeeeccchhhcccccccchhh
Confidence 57889999999999999999999999999999988 489 8 999982 3678999999874 455679999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHH--HHhCCCe----EEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE--LLTDPAL----LLC 153 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~a--L~~~p~l----lll 153 (290)
|+ |+........ . ...+.++++.+|+.+..+ + .+|||||||||+|||+ |+.+|++ |||
T Consensus 202 ni-~~~~~~~~~~-~----~~~~~~ll~~~gl~~~~~--~--------~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 202 PT-WGQSLTSGAT-L----LHNKQPMVKNFGLERINE--N--------KDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp TT-CSCBCBSSCC-S----SCCBCCEECCCCSSSGGG--C--------HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hh-cccccccCcc-h----HHHHHHHHHHhCCCcccc--h--------hhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 98 6432211100 0 122345677788876554 2 3499999999999999 9999999 999
Q ss_pred eC-CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc--H---HHHhhcCe-----EEEEe-CCeEEEEcCHHHHH
Q psy2520 154 DE-PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS--S---ELIDMFDK-----IILLA-DSRTAFIGSKDAAL 219 (290)
Q Consensus 154 DE-PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~--~---~~~~~~d~-----v~~l~-~G~i~~~g~~~~~~ 219 (290)
|| ||++||+. ...+.+++++ .+.|+|+++|+.. . ++..+||+ |++|+ +|+++ .|+++++.
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred eCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 99 99999999 5555555544 3679999999964 1 56689999 99999 99999 99987653
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-29 Score=233.91 Aligned_cols=82 Identities=22% Similarity=0.339 Sum_probs=74.7
Q ss_pred CCCCChHHHHHHHHHHHHH------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCe
Q psy2520 127 KVVLSGGERKRLSFATELL------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 200 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~ 200 (290)
+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++ +.|.|||+|||++ . ....||+
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~-~~g~tvi~itH~~-~-~~~~~d~ 353 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELE-RLNKVIVFITHDR-E-FSEAFDR 353 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGG-GSSSEEEEEESCH-H-HHTTCSC
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEEecch-H-HHHhCCE
Confidence 4569999999999999999 6999999999999999999999999999994 5699999999997 3 4788999
Q ss_pred EEEEeCCeEEE
Q psy2520 201 IILLADSRTAF 211 (290)
Q Consensus 201 v~~l~~G~i~~ 211 (290)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=229.16 Aligned_cols=87 Identities=18% Similarity=0.338 Sum_probs=72.7
Q ss_pred CCCCChHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE-
Q psy2520 127 KVVLSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI- 201 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v- 201 (290)
+..||+|||||++||++|+ .+|++|||||||++||+..+..++++|+++ .+ |.|||++||++ ++...||++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~-~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SK-HTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TT-TSEEEEECCCT--TGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CCeEEEEECCH--HHHhhCceEE
Confidence 3459999999999999998 578999999999999999999999999998 44 78999999995 467899987
Q ss_pred -EEEeCCeE-EEEcCHHH
Q psy2520 202 -ILLADSRT-AFIGSKDA 217 (290)
Q Consensus 202 -~~l~~G~i-~~~g~~~~ 217 (290)
++|.+|.. +.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 78887754 44455444
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-31 Score=233.02 Aligned_cols=145 Identities=16% Similarity=0.180 Sum_probs=96.1
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHHH-HHHH
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEHL-YFMA 85 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~l-~~~~ 85 (290)
+++|++++|+|||||||||||++|+|+ +|+ +|+|. +.++.. ..++.+||+||++ +||+ .+..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~--~~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~ 84 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVS--RIILTRPAVEAGEKLGFLPGTL--------NEKIDPYLR 84 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCS--EEEEEECSCCTTCCCCSSCC--------------CTTTH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeee--eEEecCCchhhhcceEEecCCH--------HHHHHHHHH
Confidence 478999999999999999999999999 884 79884 222221 3567899999975 4444 2211
Q ss_pred ----HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 86 ----LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 86 ----~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
..... .. .+.+.++++. + | ||||||+|||||+.+|++|||||||++
T Consensus 85 ~~~~~~~~~--~~----~~~~~~~l~~-g-------------------l--Gq~qrv~lAraL~~~p~lllLDEPts~-- 134 (208)
T 3b85_A 85 PLHDALRDM--VE----PEVIPKLMEA-G-------------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT-- 134 (208)
T ss_dssp HHHHHHTTT--SC----TTHHHHHHHT-T-------------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC--
T ss_pred HHHHHHHHh--cc----HHHHHHHHHh-C-------------------C--chHHHHHHHHHHhcCCCEEEEeCCccc--
Confidence 01100 00 1223444442 1 4 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
++..++++|+++ . .|+||| +|||+. ++ ++....++|.
T Consensus 135 --~~~~l~~~l~~l-~-~g~tii-vtHd~~-~~----~~~~~~~~G~ 171 (208)
T 3b85_A 135 --TPAQMKMFLTRL-G-FGSKMV-VTGDIT-QV----DLPGGQKSGL 171 (208)
T ss_dssp --CHHHHHHHHTTB-C-TTCEEE-EEEC-----------------CC
T ss_pred --cHHHHHHHHHHh-c-CCCEEE-EECCHH-HH----hCcCCCCCcH
Confidence 889999999988 4 489999 999973 33 3344445553
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-29 Score=213.08 Aligned_cols=146 Identities=16% Similarity=0.225 Sum_probs=101.4
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCC-CCCCCHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF-SPSLTVYEHLYF 83 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~-~~~lTv~e~l~~ 83 (290)
||||++++||+++|+||||||||||++++.+ |...+++. . ..|+++|++.- ...-++++.+.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d----~---~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSD----F---CRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHH----H---HHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccH----H---HHHHhcCcccchhhHHHHHHHHHH
Confidence 6999999999999999999999999998542 22222111 1 12667776421 000011221111
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
........+.....+.. ...|+|||||++||++++.+|++|+|||||++||+.
T Consensus 65 ------------------~~~~~~~~g~~~~~~~~---------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~ 117 (171)
T 4gp7_A 65 ------------------IVSKRLQLGKLTVVDAT---------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQER 117 (171)
T ss_dssp ------------------HHHHHHHTTCCEEEESC---------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred ------------------HHHHHHhCCCeEEEECC---------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHH
Confidence 11122234544333332 337999999999999999999999999999999999
Q ss_pred ----------------HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHH
Q psy2520 164 ----------------SASKLIRMMRELTSQRKKTVLCTIHQPSSELI 195 (290)
Q Consensus 164 ----------------~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~ 195 (290)
.+..+++.|++++++ |.|+|++||++ .++.
T Consensus 118 ~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~-~~~~ 163 (171)
T 4gp7_A 118 NKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP-EEVE 163 (171)
T ss_dssp HHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH-HHHH
T ss_pred HhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH-HHhh
Confidence 668899999998555 99999999997 3443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-30 Score=245.38 Aligned_cols=172 Identities=15% Similarity=0.186 Sum_probs=137.3
Q ss_pred ceEEEEeCCe--------------------EEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEE
Q psy2520 5 ELTGAALSGT--------------------LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGF 64 (290)
Q Consensus 5 ~is~~~~~Ge--------------------~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~ 64 (290)
+||+.+++|+ +++|+||||||||||+|+|+|+.+|+ +|+|.++|.+++ + .+|
T Consensus 41 ~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---~--~~~ 112 (413)
T 1tq4_A 41 LIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---M--ERH 112 (413)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------C--CCE
T ss_pred hccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---e--eEE
Confidence 6888999999 99999999999999999999999984 799999998753 2 278
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChH--HHHHHHHHH
Q psy2520 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG--ERKRLSFAT 142 (290)
Q Consensus 65 v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgG--qrqRv~ia~ 142 (290)
++|++ .++.+|++|++.++.. ...+.++++.+++.+.. .. +. ||+| |+||++||+
T Consensus 113 v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~~-~~--------~~-lS~G~~~kqrv~la~ 169 (413)
T 1tq4_A 113 PYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEYD-FF--------II-ISATRFKKNDIDIAK 169 (413)
T ss_dssp EEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGCS-EE--------EE-EESSCCCHHHHHHHH
T ss_pred ecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCccC-Ce--------EE-eCCCCccHHHHHHHH
Confidence 99975 5778899988755310 12356788888886543 22 22 9999 999999999
Q ss_pred HHHh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh----cC----CcEEEEEeCCCcHH--HHhhcCeEE
Q psy2520 143 ELLT----------DPALLLCDEPTTGLDSFSASKLIRMMRELTS----QR----KKTVLCTIHQPSSE--LIDMFDKII 202 (290)
Q Consensus 143 aL~~----------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~----~~----g~tii~~tH~~~~~--~~~~~d~v~ 202 (290)
+|+. +|++++|||||+|||+.++.++++.|+++.. +. ..+|++++|+.. + +.+++|++.
T Consensus 170 aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~-~~~~e~L~d~I~ 248 (413)
T 1tq4_A 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVC-HYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTT-STTHHHHHHHHH
T ss_pred HHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCC-ccCHHHHHHHHH
Confidence 9999 9999999999999999999999999999841 22 367889999874 4 788899885
Q ss_pred -EEeCCe
Q psy2520 203 -LLADSR 208 (290)
Q Consensus 203 -~l~~G~ 208 (290)
.|..|.
T Consensus 249 ~~Lpeg~ 255 (413)
T 1tq4_A 249 SDLPIYK 255 (413)
T ss_dssp HHSCGGG
T ss_pred HhCccch
Confidence 566665
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-31 Score=231.56 Aligned_cols=175 Identities=15% Similarity=0.097 Sum_probs=119.8
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL 87 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~ 87 (290)
.++++|++++|+||||||||||+++|+|+++. ..+.+.+.+.+.....++.++|+||++.+++.+|+.+++.+....
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~ 91 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEI 91 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhh
Confidence 57899999999999999999999999999853 233222222221112356799999998777777777765421100
Q ss_pred cC---chhhhHHHHHHHHHHH------HHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 88 KL---DRRVKAYQRIALINSL------LIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 88 ~~---~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
.. ..........+++.+. ++.+|+.+..++. +..|| +|+.+|++++|||||+
T Consensus 92 ~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--------~~~lS-----------~l~~~p~~~~LDep~~ 152 (207)
T 1znw_A 92 HGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM--------PEAVT-----------VFLAPPSWQDLQARLI 152 (207)
T ss_dssp GGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC--------TTSEE-----------EEEECSCHHHHHHHHH
T ss_pred cCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc--------CCcEE-----------EEEECCCHHHHHHHHH
Confidence 00 0011222233334444 4455555455555 34476 8999999999999999
Q ss_pred CC----CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 159 GL----DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 159 gL----D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
++ |+..+.++.+.+++++++.|.|+|++|||+ +++..+||++++|.
T Consensus 153 ~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 153 GRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 98 788999999999999655689999999997 58999999999984
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-28 Score=224.72 Aligned_cols=174 Identities=17% Similarity=0.170 Sum_probs=135.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cc--cccEEEEccCCC-CC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KF--RSACGFMYQHDL-FS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~--~~~ig~v~Q~~~-~~ 72 (290)
..+||.+++|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. .+ +..++|++|++. ++
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 3688899999999999999999999999999999884 7999999998743 12 346999999988 88
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC--e
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--L 150 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--l 150 (290)
+.+||+|++.++..... . ..+++.+|+.+..++.+ .+|| |||++|||+|+.+|+ +
T Consensus 168 ~~~~v~e~l~~~~~~~~-d-----------~~lldt~gl~~~~~~~~--------~eLS---kqr~~iaral~~~P~e~l 224 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEGY-D-----------VVLCDTSGRLHTNYSLM--------EELI---ACKKAVGKIVSGAPNEIL 224 (302)
T ss_dssp HHHHHHHHHHHHHHTTC-S-----------EEEECCCCCSSCCHHHH--------HHHH---HHHHHHHTTSTTCCSEEE
T ss_pred HHHHHHHHHHHHHHcCC-c-----------chHHhcCCCCcchhHHH--------HHHH---HHHHHHHHhhccCCCeeE
Confidence 88999999987642110 0 12456778877666664 4499 999999999999999 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC--------cHHHHhhcCeEEEEeCCeEE
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP--------SSELIDMFDKIILLADSRTA 210 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~--------~~~~~~~~d~v~~l~~G~i~ 210 (290)
|+|| ||+|||+..+. +++.++.|.|+|++||.- ...+....+.|.++..|+.+
T Consensus 225 LvLD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 225 LVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp EEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred EEEe-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9999 99999998652 445334589999999931 12344567889999999753
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-28 Score=203.99 Aligned_cols=144 Identities=16% Similarity=0.126 Sum_probs=101.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHHHHHHHHHhcCc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD 90 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~ 90 (290)
.++|+||||||||||+++|+|++. |.++|.+... ..++.+||++|+. ++.+++ + ....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~-- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF-- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc--
Confidence 589999999999999999999874 2234433211 2456799999975 222222 0 0000
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHH-----HHhCCCeEEEeC--CCCCCCHH
Q psy2520 91 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE-----LLTDPALLLCDE--PTTGLDSF 163 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~a-----L~~~p~llllDE--PtsgLD~~ 163 (290)
+.-.+..+++ +..||||||||++||++ |+.+|+++|||| ||++||+.
T Consensus 64 ------------------~~~~~~~~~~--------~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~ 117 (178)
T 1ye8_A 64 ------------------FTSKKLVGSY--------GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKK 117 (178)
T ss_dssp ------------------CCCSSEETTE--------EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHH
T ss_pred ------------------CCcccccccc--------ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHH
Confidence 0000234444 34599999999999996 999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeC---CCcHHHHhhcCeEEEEeCCeEEE
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIH---QPSSELIDMFDKIILLADSRTAF 211 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH---~~~~~~~~~~d~v~~l~~G~i~~ 211 (290)
.+..+.+.+.+ .+.|+|+++| +. ..+..++++ .+|+++.
T Consensus 118 ~~~~l~~~l~~----~~~~~i~~~H~~h~~-~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 118 FRDLVRQIMHD----PNVNVVATIPIRDVH-PLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHHHHHTC----TTSEEEEECCSSCCS-HHHHHHHTC----TTCEEEE
T ss_pred HHHHHHHHHhc----CCCeEEEEEccCCCc-hHHHHHHhc----CCcEEEE
Confidence 99998888754 4677888885 64 578888987 4556554
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-27 Score=221.28 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=136.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cc--cccEEEEccCCC-CC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KF--RSACGFMYQHDL-FS 72 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~--~~~ig~v~Q~~~-~~ 72 (290)
..+||.+++|++++|+||||||||||++.|+|+++|. +|+|.++|.++.. .+ +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 3688899999999999999999999999999999884 7999999998743 12 346999999987 88
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC--e
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--L 150 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--l 150 (290)
|.+|+++++.++...... ..+++.+|+.+..++.+ .+|| |||++|||+|+.+|+ +
T Consensus 225 p~~tv~e~l~~~~~~~~d------------~~lldt~Gl~~~~~~~~--------~eLS---kqr~~iaral~~~P~e~l 281 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGYD------------VVLCDTSGRLHTNYSLM--------EELI---ACKKAVGKIVSGAPNEIL 281 (359)
T ss_dssp HHHHHHHHHHHHHHTTCS------------EEEEECCCCSSCCHHHH--------HHHH---HHHHHHHHHSTTCCSEEE
T ss_pred hhhhHHHHHHHHHhCCCH------------HHHHHhcCCChhhhhHH--------HHHH---HHHHHHHHHHhcCCCceE
Confidence 889999999886431110 12456678877666663 4499 999999999999999 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC--------cHHHHhhcCeEEEEeCCeE
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP--------SSELIDMFDKIILLADSRT 209 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~--------~~~~~~~~d~v~~l~~G~i 209 (290)
|+|| ||+|||+..+. +.+.+..|.|+|++||.- ...+......|.++..|+.
T Consensus 282 LvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 282 LVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp EEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9999 99999998653 344334589999999931 1234556788999998875
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-27 Score=214.02 Aligned_cols=146 Identities=17% Similarity=0.171 Sum_probs=95.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHHHHHHhcCchhh
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRV 93 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~ 93 (290)
.++|+||||||||||+|+|+|+..|. +|+|.++|+++.. ..++.++|++|++.+++.+||.||+.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-NC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-TC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-HH
Confidence 47999999999999999999999984 7999999998754 3457899999999999999999999886533211 10
Q ss_pred hHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2520 94 KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 173 (290)
Q Consensus 94 ~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~ 173 (290)
. +.+.+++. ....+.. +.+||||||||+++|||++. ++++|||++|||+.. .++++
T Consensus 80 ~-----~~i~~~~~----~~~~~~~--------~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~ 135 (270)
T 3sop_A 80 W-----EPIEKYIN----EQYEKFL--------KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMK 135 (270)
T ss_dssp S-----HHHHHHHH----HHHHHHH--------HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHH
T ss_pred H-----HHHHHHHH----HHHHhhh--------HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHH
Confidence 0 11222222 1222333 23499999999999999876 999999999999987 55666
Q ss_pred HHHhcCCcEEEEEeCCC
Q psy2520 174 ELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 174 ~l~~~~g~tii~~tH~~ 190 (290)
.+ ++. .+||++.|..
T Consensus 136 ~L-~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 136 HL-SKV-VNIIPVIAKA 150 (270)
T ss_dssp HH-HTT-SEEEEEETTG
T ss_pred HH-Hhc-CcEEEEEecc
Confidence 77 344 7899998874
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-29 Score=218.39 Aligned_cols=150 Identities=12% Similarity=0.071 Sum_probs=99.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----cccccEEEEccCCCCCCCCCH-
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTV- 77 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~ig~v~Q~~~~~~~lTv- 77 (290)
.||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++.. ..+..++|+||++.+|+.++.
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4899999999999999999999999999999987 5 88999 776532 235679999998665543321
Q ss_pred HHHHHHHHHhcCc-hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHH-----HHHHHhCCCeE
Q psy2520 78 YEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSF-----ATELLTDPALL 151 (290)
Q Consensus 78 ~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~i-----a~aL~~~p~ll 151 (290)
.+++.+. ..... ..... ..++++++...+. ..+. .|||||+||++| +++|+..|+++
T Consensus 87 ~~~l~~~-~~~~~~~g~~~----~~i~~~l~~~~~~-il~~-----------~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 87 EDFLEYD-NYANNFYGTLK----SEYDKAKEQNKIC-LFEM-----------NINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp TCEEEEE-EETTEEEEEEH----HHHHHHHHTTCEE-EEEE-----------CHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred cchhhhh-hcccccCCCcH----HHHHHHHhCCCcE-EEEe-----------cHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 1111100 00000 00111 2245556543321 1121 389999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTS 177 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~ 177 (290)
+|||||+++|..+...+.+.|.....
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998887643
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=195.97 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=74.2
Q ss_pred CCChHHHHHHHHHHHHH---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcC
Q psy2520 129 VLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 199 (290)
Q Consensus 129 ~LSgGqrqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d 199 (290)
.||||||||++||++|+ .+|+||||||||++||+..+..+++.|.++ . .|+|++||. . . .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~-~---qt~i~~th~-~-~---~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV-P---QAIVTGTEL-A-P---GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS-S---EEEEEESSC-C-T---TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc-C---cEEEEEEec-c-c---cCC
Confidence 59999999999999999 899999999999999999999999999887 2 699999994 3 3 899
Q ss_pred eEEEEeCCeEEEEcCHHHH
Q psy2520 200 KIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 200 ~v~~l~~G~i~~~g~~~~~ 218 (290)
++++|++|+++..|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999988754
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=192.63 Aligned_cols=76 Identities=37% Similarity=0.493 Sum_probs=67.1
Q ss_pred CCCCChHHHH------HHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCe
Q psy2520 127 KVVLSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 200 (290)
Q Consensus 127 ~~~LSgGqrq------Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~ 200 (290)
+..||||||| |+++|++|+.+|++|||||||++||+..+..++++|+++. ..|.|||++||++ ++...||+
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL-KKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTG-GGSSEEEEEESCG--GGGGGCSE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEEChH--HHHHhCCE
Confidence 4569999999 5677778888999999999999999999999999999984 4588999999995 46789999
Q ss_pred EEEEe
Q psy2520 201 IILLA 205 (290)
Q Consensus 201 v~~l~ 205 (290)
+++|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-24 Score=218.37 Aligned_cols=163 Identities=28% Similarity=0.412 Sum_probs=124.6
Q ss_pred HHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcCchh--h---hHHHHHHHH
Q psy2520 28 TLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR--V---KAYQRIALI 102 (290)
Q Consensus 28 TLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~--~---~~~~~~~~~ 102 (290)
|...|..+++.|. .|+|.|+|+++.. +..++|.+++.|......... . .........
T Consensus 383 ~C~~C~g~rl~~~---~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (916)
T 3pih_A 383 TCSVCGGRRLNRE---ALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKR 444 (916)
T ss_dssp ECTTTCSCCBCTT---GGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHH
T ss_pred cchhcccccCChH---hcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHH
Confidence 3445566677774 7999999998632 234577777776443221110 0 001112334
Q ss_pred HHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q psy2520 103 NSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--LLLCDEPTTGLDSFSASKLIRMMRELTSQR 179 (290)
Q Consensus 103 ~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 179 (290)
.+++..+||... .++.+ .+|||||||||+|||||+.+|+ +|||||||+|||+.....++++|+++ ++.
T Consensus 445 ~~~L~~vgL~~l~l~r~~--------~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L-~~~ 515 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSA--------TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKL-RDL 515 (916)
T ss_dssp HHHHHTTTCTTCBTTSBG--------GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHT-TTT
T ss_pred HHHHHHcCCccccccCCc--------ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHH-Hhc
Confidence 567888999765 57774 4599999999999999999887 99999999999999999999999999 556
Q ss_pred CcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHHH
Q psy2520 180 KKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 219 (290)
Q Consensus 180 g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~ 219 (290)
|.|||+||||+ +. ...||+|++| ++|++++.|++++++
T Consensus 516 G~TvivVtHd~-~~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 516 GNTVIVVEHDE-EV-IRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp TCEEEEECCCH-HH-HHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred CCEEEEEeCCH-HH-HHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 99999999996 34 4569999999 899999999999875
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-28 Score=220.83 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=113.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHH-HHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYE-HLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e-~l~ 82 (290)
.++||.+++|++++|+||||||||||+++|+|++ +|+|. +|++|++.++.. |+++ |+.
T Consensus 117 ~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~--------------~~v~q~~~lf~~-ti~~~ni~ 175 (305)
T 2v9p_A 117 KLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL--------------SFANHKSHFWLA-SLADTRAA 175 (305)
T ss_dssp HHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE--------------CGGGTTSGGGGG-GGTTCSCE
T ss_pred ccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE--------------EEecCccccccc-cHHHHhhc
Confidence 3688999999999999999999999999999997 38883 467787776653 7776 766
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
|... ... .+.+.++.+ |.+..+ + ..|||||||| ||||+.+|+||| |++||+
T Consensus 176 ~~~~------~~~-----~~~~~i~~~-L~~gld---g-------~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 176 LVDD------ATH-----ACWRYFDTY-LRNALD---G-------YPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp EEEE------ECH-----HHHHHHHHT-TTGGGG---T-------CCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred cCcc------ccH-----HHHHHHHHH-hHccCC---c-------cCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 5310 111 233455543 433333 1 3499999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 223 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 223 (290)
.+...+.. .+|++. ....||+| +|++|++++.|+++++...+.
T Consensus 227 ~~~~~i~~---------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~ 269 (305)
T 2v9p_A 227 QAEDRYLY---------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFV 269 (305)
T ss_dssp TTCGGGGG---------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHH
T ss_pred HHHHHHHH---------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHH
Confidence 99888752 188864 45789999 999999999999998744443
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-26 Score=219.54 Aligned_cols=172 Identities=16% Similarity=0.083 Sum_probs=136.0
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCE---ecCc---------cccccEEEEccC-CCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK---PVEG---------KFRSACGFMYQH-DLF 71 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~---~~~~---------~~~~~ig~v~Q~-~~~ 71 (290)
++ |.+.+|++++|+|||||||||||++|+|+.+|+ +|.|.++|+ ++.. .+++.++|++|+ ..+
T Consensus 150 ~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~ 225 (438)
T 2dpy_A 150 AL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSP 225 (438)
T ss_dssp HH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCH
T ss_pred ee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCH
Confidence 56 889999999999999999999999999999884 899999998 4432 245779999995 566
Q ss_pred CCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 72 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
++.+||.+|+.+.+...... .+ ......+. +..||+|| |||+|| +.+|++
T Consensus 226 ~~~~~v~~~~~~~ae~~~~~-------~~---------~v~~~ld~---------l~~lS~g~-qrvslA---l~~p~~- 275 (438)
T 2dpy_A 226 LLRMQGAAYATRIAEDFRDR-------GQ---------HVLLIMDS---------LTRYAMAQ-REIALA---IGEPPA- 275 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-------TC---------EEEEEEEC---------HHHHHHHH-HHHHHH---TTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhC-------CC---------CHHHHHHh---------HHHHHHHH-HHHHHH---hCCCcc-
Confidence 77889999988865431100 00 00011111 23399999 999999 888888
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh---cCCc-----EEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTS---QRKK-----TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~---~~g~-----tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|+|||+.....+.+++.++.+ +.|. ||+++|||+. ..+||++++|.+|+++..+++.++
T Consensus 276 -----t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 276 -----TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp -----SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred -----cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 999999999999999999844 2375 9999999984 578999999999999999887754
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-24 Score=197.47 Aligned_cols=180 Identities=13% Similarity=0.070 Sum_probs=117.2
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCcc-EEEECCEecCc-cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG-DIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G-~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
++++.+.+|++++|+||||||||||++.|+|...+. +| .|.+.+.+... .+++++.+++++.. +++.+++.
T Consensus 27 ~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~~l~ 99 (296)
T 1cr0_A 27 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSDSLK 99 (296)
T ss_dssp HHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCHHHH
T ss_pred HHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhccccc
Confidence 567889999999999999999999999999998873 47 67554433322 23333444444321 12334443
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHH-HHHHHHHHHHHhCCCeEEEeCCCC---
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE-RKRLSFATELLTDPALLLCDEPTT--- 158 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGq-rqRv~ia~aL~~~p~llllDEPts--- 158 (290)
... + ...+..+.+.++++..++. .... +..+|.+| +||+. |+++..+|+++|+||||+
T Consensus 100 ~~~-~------~~~~~~~~~~~~l~~~~l~--i~~~--------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 100 REI-I------ENGKFDQWFDELFGNDTFH--LYDS--------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHH-H------HHTHHHHHHHHHHSSSCEE--EECC--------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred cCC-C------CHHHHHHHHHHHhccCCEE--EECC--------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 321 1 1111222334444322221 1111 23489998 66776 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhcCCcEEEEEeCCCc-H--------------------HHHhhcCeEEEEeCCeE
Q psy2520 159 G---LDS-FSASKLIRMMRELTSQRKKTVLCTIHQPS-S--------------------ELIDMFDKIILLADSRT 209 (290)
Q Consensus 159 g---LD~-~~~~~i~~~l~~l~~~~g~tii~~tH~~~-~--------------------~~~~~~d~v~~l~~G~i 209 (290)
+ +|+ .....+++.|++++++.|+|||+++|+.. . .+..+||+|++|++|+.
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 67788999999997666999999999951 2 57789999999998874
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-23 Score=200.11 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=69.9
Q ss_pred CCCC-ChHHHHHHHHHHHHHhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 127 KVVL-SGGERKRLSFATELLTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 127 ~~~L-SgGqrqRv~ia~aL~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ + |.|||+|||++ . +...||++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~-~-~~~vi~itH~~-~-~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLA-Q-IAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHH-H-HSEEEEECCCH-H-HHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHh-C-CCEEEEEecCH-H-HHHhCCEEEE
Confidence 4567 999999999999999999 9999999999999999999999999994 4 79999999996 3 5568999999
Q ss_pred EeCC
Q psy2520 204 LADS 207 (290)
Q Consensus 204 l~~G 207 (290)
|.++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-24 Score=201.69 Aligned_cols=128 Identities=17% Similarity=0.272 Sum_probs=103.2
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
++|+.+++|++++|+||||||||||+++|+|+++|+ +|.|.++|.+... ..++.+++++
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~---------------- 223 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF---------------- 223 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC----------------
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe----------------
Confidence 578889999999999999999999999999999984 7999999864211 0222233322
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+ |||+||++||+||..+|++||+||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 0 689999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeE
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 209 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i 209 (290)
.++++.|+.+ ...+.|+|+++|+++ +...+||+++|.+|..
T Consensus 252 ---~e~~~~l~~~-~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 ---SEAYDFYNVL-CSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp ---THHHHHHHHH-HTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred ---HHHHHHHHHH-hcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2456778887 343458999999974 6789999999998863
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-23 Score=204.44 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=118.9
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 86 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~ 86 (290)
++.+.+|++++|+||||||||||+++++|..++ .|+ +.+.|++|++. .++.+++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~-------------~vi~~~~ee~~----~~l~~~~~---~ 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE-------------RAILFAYEESR----AQLLRNAY---S 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC-------------CEEEEESSSCH----HHHHHHHH---T
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC-------------CEEEEEEeCCH----HHHHHHHH---H
Confidence 457899999999999999999999999998876 243 12456676531 12222221 1
Q ss_pred hcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH---
Q psy2520 87 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF--- 163 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~--- 163 (290)
+.. . +.+ +...|+....+.. +..|||||+||+++|+++..+|++||+| ||++||+.
T Consensus 331 ~g~----~-------~~~-~~~~g~~~~~~~~--------p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~ 389 (525)
T 1tf7_A 331 WGM----D-------FEE-MERQNLLKIVCAY--------PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSN 389 (525)
T ss_dssp TSC----C-------HHH-HHHTTSEEECCCC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCH
T ss_pred cCC----C-------HHH-HHhCCCEEEEEec--------cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCCh
Confidence 111 1 112 2245666666666 4459999999999999999999999999 99999999
Q ss_pred --HHHHHHHHHHHHHhcCCcEEEEEeCCCc---------HHHHhhcCeEEEEeCCe
Q psy2520 164 --SASKLIRMMRELTSQRKKTVLCTIHQPS---------SELIDMFDKIILLADSR 208 (290)
Q Consensus 164 --~~~~i~~~l~~l~~~~g~tii~~tH~~~---------~~~~~~~d~v~~l~~G~ 208 (290)
.+..+.++++.+ ++.|.|||+++|+.. ..+..+||+|++|.+|+
T Consensus 390 ~~~~~~i~~ll~~l-~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 390 NAFRQFVIGVTGYA-KQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHH-HHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHH-HhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999999998 456999999999971 35677899999999886
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.7e-25 Score=200.56 Aligned_cols=123 Identities=14% Similarity=0.099 Sum_probs=97.2
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 89 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~ 89 (290)
+++|+++||+||||||||||+++|+|+++|. .|. +.++||+|++.+++. |+.||+.+... +.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~g 148 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH-------------PRVDLVTTDGFLYPN-AELQRRNLMHR-KG 148 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTTC-TT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC-------------CeEEEEecCccCCcc-cHHHHHHHHHh-cC
Confidence 7899999999999999999999999999883 342 459999999888887 99999865321 11
Q ss_pred chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 90 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
.. .....+.+.++++.++ ....+..+ ..|||||+||+++|++++.+|+|||||||+..+|+
T Consensus 149 ~~---~~~d~~~~~~~L~~l~-~~~~~~~~--------~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 149 FP---ESYNRRALMRFVTSVK-SGSDYACA--------PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp SG---GGBCHHHHHHHHHHHH-TTCSCEEE--------EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CC---hHHHHHHHHHHHHHhC-CCcccCCc--------ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 11 1112244567788777 44455553 34999999999999999999999999999999986
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=200.66 Aligned_cols=135 Identities=23% Similarity=0.354 Sum_probs=109.6
Q ss_pred CCCCHHHHHHHHHHhcCchhhh------HHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHH
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVK------AYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELL 145 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~ 145 (290)
..+||.|++.|...+..+.... ..+..+++ ++|..+||... .++.++ +|||||+|||+||++|+
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~--------tLSGGEkQRV~LA~aL~ 520 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG--------TLSGGEAQRIRLATQIG 520 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG--------GCCHHHHHHHHHHHHHT
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc--------cCCHHHHHHHHHHHHHh
Confidence 3589999999976554332100 01223334 46899999865 688844 49999999999999999
Q ss_pred hCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHH
Q psy2520 146 TDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDA 217 (290)
Q Consensus 146 ~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~ 217 (290)
.+| ++|||||||+|||+.....++++|+++ ++.|.|||+|+|++ ++ ...||+|++| .+|++++.|++++
T Consensus 521 ~~~~~~llILDEPTagLdp~~~~~L~~~L~~L-r~~G~TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e 597 (972)
T 2r6f_A 521 SRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM-RDLGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEE 597 (972)
T ss_dssp TCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH-HTTTCEEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTT
T ss_pred hCCCCCEEEEeCcccCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHH
Confidence 985 999999999999999999999999999 56799999999996 44 4679999999 7999999999887
Q ss_pred HH
Q psy2520 218 AL 219 (290)
Q Consensus 218 ~~ 219 (290)
+.
T Consensus 598 ~~ 599 (972)
T 2r6f_A 598 VM 599 (972)
T ss_dssp TT
T ss_pred HH
Confidence 64
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-23 Score=185.35 Aligned_cols=173 Identities=14% Similarity=0.120 Sum_probs=111.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+.+++.+
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~------~~~~~i~~v~~d~-~~~~l~~~~~~~~ 81 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE------QRQRKVVILSQDR-FYKVLTAEQKAKA 81 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC------GGGCSEEEEEGGG-GBCCCCHHHHHHH
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc------ccCCceEEEeCCc-CccccCHhHhhhh
Confidence 4799999999999999999999999999999965 333343 2467799999985 7788999999877
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
......... ......+.+.+.++.+ .+..+.. +..||+||+||+++ ++++.+|+++|+|||....+..
T Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~--------~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 82 LKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE--------VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp HTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE--------ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred hccCCCCCC-cccccHHHHHHHHHHH--HCCCCee--------cccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 543221110 0001112234444443 3344555 34599999999988 5888899999999998888763
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHh-hcCeEEEEeCCeEEEEcCHHHHHHHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADSRTAFIGSKDAALAFL 222 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~ 222 (290)
+.++ .+.+|++++|+. ..+.+ +++++ .+|+ +.+++...+
T Consensus 150 --------l~~~---~~~~i~v~th~~-~~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 150 --------IRDM---FHLRLFVDTDSD-VRLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp --------HHTT---CSEEEEEECCHH-HHHHHHHHHHT---C--------CHHHHHHHH
T ss_pred --------HHHh---cCeEEEEECCHH-HHHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 2222 378999999973 34444 34444 6664 566665433
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-23 Score=182.58 Aligned_cols=155 Identities=16% Similarity=0.177 Sum_probs=98.6
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC----CCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDC----IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~----~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
+-+++|++++|+||||||||||+++|+|...+.. ...|.|++++++.. ..+.+++++|...+++. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--CHHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--CHHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 3588999999999999999999999999554310 01346666664321 11234455554433332 33333322
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHH-HHHHHHHHHHHh-------CCCeEEEeC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE-RKRLSFATELLT-------DPALLLCDE 155 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGq-rqRv~ia~aL~~-------~p~llllDE 155 (290)
.. ..+.++ ++.+..+++++. +|+++++||
T Consensus 97 ~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe 133 (231)
T 4a74_A 97 AR-------------------------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS 133 (231)
T ss_dssp EE-------------------------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEET
T ss_pred Ee-------------------------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECC
Confidence 10 023332 233455555554 999999999
Q ss_pred CCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEeCCCc---HHHHhhcCeEEEEeCCe
Q psy2520 156 PTTGLDSFS------------ASKLIRMMRELTSQRKKTVLCTIHQPS---SELIDMFDKIILLADSR 208 (290)
Q Consensus 156 PtsgLD~~~------------~~~i~~~l~~l~~~~g~tii~~tH~~~---~~~~~~~d~v~~l~~G~ 208 (290)
||+++|+.. ..++++.|++++++.|.|||++||... ..+...+|++++|++|+
T Consensus 134 ~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 134 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp SSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 999999842 237888888886666999999999542 23778899999998763
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-22 Score=202.61 Aligned_cols=177 Identities=16% Similarity=0.199 Sum_probs=124.9
Q ss_pred CCChHHHHHHHHHcCCCCCC------CCccEEEECCEecCc----cccccEEEEccC---CCCCC----CCCH-HHHHHH
Q psy2520 22 SGAGKSTLLAALSQRLPDDC------IIDGDIRVNGKPVEG----KFRSACGFMYQH---DLFSP----SLTV-YEHLYF 83 (290)
Q Consensus 22 nGaGKSTLl~~l~G~~~~~~------~~~G~I~i~G~~~~~----~~~~~ig~v~Q~---~~~~~----~lTv-~e~l~~ 83 (290)
+..||++|.+.+....-|.. ..+|+|.++|+++.. .....++++.|. +.... .++. ...+.+
T Consensus 271 ~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 350 (842)
T 2vf7_A 271 SASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRPEQAIALQ 350 (842)
T ss_dssp CHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCSSHHHHHH
T ss_pred CHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcchhhHHHHH
Confidence 45689999998876433311 136889999988754 122223333221 11000 0000 011111
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC--CeEEEeCCCCCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDP--ALLLCDEPTTGL 160 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p--~llllDEPtsgL 160 (290)
.. ..+...++. .+..+||... .++.+ .+|||||||||+||++|+.+| .+|||||||++|
T Consensus 351 ~i---------~~ei~~rl~-~L~~vGL~~l~l~r~~--------~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~L 412 (842)
T 2vf7_A 351 RM---------AADLVKRLD-VLLHLGLGYLGLDRST--------PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGL 412 (842)
T ss_dssp HH---------HHHHHHHHH-HHHHTTCTTSBTTCBG--------GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTC
T ss_pred HH---------HHHHHHHHH-HHHhCCCCcCCccCCc--------CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccC
Confidence 00 112233344 6889999865 68874 459999999999999999999 599999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE------eCCeEEEEcCHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 219 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~ 219 (290)
|+.....++++|+++ ++.|.|||+|+|++ + +...||+|++| .+|++++.|+++++.
T Consensus 413 d~~~~~~L~~~l~~L-~~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 413 HPADTEALLSALENL-KRGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp CGGGHHHHHHHHHHH-HTTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred CHHHHHHHHHHHHHH-HHcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 999999999999999 56799999999996 3 56789999999 799999999988754
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-25 Score=218.51 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=111.2
Q ss_pred cceEE-EEeCCeEEEEECCCCChHHHHHHH--HHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCH
Q psy2520 4 LELTG-AALSGTLVAIMGASGAGKSTLLAA--LSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTV 77 (290)
Q Consensus 4 ~~is~-~~~~Ge~~~IiGpnGaGKSTLl~~--l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv 77 (290)
++||| .+.+|++++|+||||||||||+++ ++|+.+|+ +|.|+++|++... ..++.+||++|++...++
T Consensus 29 d~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~--- 102 (525)
T 1tf7_A 29 DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK--- 102 (525)
T ss_dssp HHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS---
T ss_pred HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc---
Confidence 36788 999999999999999999999999 78998874 7999999987532 234678999997432111
Q ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH-hCCCeEEEeCC
Q psy2520 78 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-TDPALLLCDEP 156 (290)
Q Consensus 78 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~-~~p~llllDEP 156 (290)
+.+ ...... . ...++++. +.-++ +.-.++.+|. .+|++++||||
T Consensus 103 ---l~~---~~~~~~-~------~~~~~l~~---------------------~~l~~-~~~~~~~~LS~g~~~~lilDe~ 147 (525)
T 1tf7_A 103 ---LFI---LDASPD-P------EGQEVVGG---------------------FDLSA-LIERINYAIQKYRARRVSIDSV 147 (525)
T ss_dssp ---EEE---EECCCC-S------SCCSCCSS---------------------HHHHH-HHHHHHHHHHHHTCSEEEEECS
T ss_pred ---EEE---EecCcc-c------chhhhhcc---------------------cCHHH-HHHHHHHHHHHcCCCEEEECCH
Confidence 100 000000 0 00011111 22222 2233333332 46889999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHH--------HHhhcCeEEEEeC
Q psy2520 157 TT-----GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE--------LIDMFDKIILLAD 206 (290)
Q Consensus 157 ts-----gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~--------~~~~~d~v~~l~~ 206 (290)
|+ +||+..+..++++++.+++ .|+|||++||++... +..+||+|++|++
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 98 4699999999999999954 699999999998521 3456999999988
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-23 Score=211.55 Aligned_cols=147 Identities=16% Similarity=0.125 Sum_probs=106.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHH--------HcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAAL--------SQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l--------~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~l 75 (290)
.|+||.+.+|++++|+||||||||||||++ .|...|. ++.. ++.+. .++
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa---~~~~--------------~~~~d---~i~--- 709 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC---ESAE--------------VSIVD---CIL--- 709 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE---EEEE--------------EECCS---EEE---
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc---cccc--------------chHHH---HHH---
Confidence 379999999999999999999999999999 4544431 1110 11100 000
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHH--HhCCCeEEE
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL--LTDPALLLC 153 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL--~~~p~llll 153 (290)
..+|+.+.. ...+|+|+++++.+|+++ +.+|+++||
T Consensus 710 -------------------------------~~ig~~d~l-----------~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 710 -------------------------------ARVGAGDSQ-----------LKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp -------------------------------EECC--------------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred -------------------------------HhcCchhhH-----------HHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 011111111 123888888888888888 899999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHH
Q psy2520 154 DEPTTGLDSFSASKL-IRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 217 (290)
Q Consensus 154 DEPtsgLD~~~~~~i-~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 217 (290)
||||+|+|+.....+ +.++..++++.|.++|++||+. ++..++|++..+.+|++.+.++.++
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCc
Confidence 999999999999888 7777888544689999999995 4678999999999999887665543
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-23 Score=213.68 Aligned_cols=155 Identities=18% Similarity=0.156 Sum_probs=110.2
Q ss_pred cceEEEEeC-------CeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEE-EEccCCCCCCCC
Q psy2520 4 LELTGAALS-------GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACG-FMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~-------Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig-~v~Q~~~~~~~l 75 (290)
.|++|.+.+ |++++|+||||||||||||++ |++.+ ..++| ||||+.. .+
T Consensus 773 ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~---~l 829 (1022)
T 2o8b_B 773 NDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC---RL 829 (1022)
T ss_dssp EEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE---EE
T ss_pred eeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC---CC
Confidence 367888877 899999999999999999999 98753 12355 8999752 34
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||.+++.. .+|+.+..... ...+|+++++ +++|++++.+|+++||||
T Consensus 830 ~v~d~I~~------------------------rig~~d~~~~~--------~stf~~em~~-~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 830 TPIDRVFT------------------------RLGASDRIMSG--------ESTFFVELSE-TASILMHATAHSLVLVDE 876 (1022)
T ss_dssp CCCSBEEE------------------------ECC-----------------CHHHHHHHH-HHHHHHHCCTTCEEEEEC
T ss_pred CHHHHHHH------------------------HcCCHHHHhhc--------hhhhHHHHHH-HHHHHHhCCCCcEEEEEC
Confidence 55554421 11221111111 2337887775 999999999999999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEE--EEcCHH
Q psy2520 156 PTTGLDSFSA-SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA--FIGSKD 216 (290)
Q Consensus 156 PtsgLD~~~~-~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~--~~g~~~ 216 (290)
|++|+|+... ..++.+|+.++++.|.++|++||++ ..+..++|++.++ +|++. ..|+++
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMACMVENECE 938 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEEC------
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEEEEecCcc
Confidence 9999999985 5578999998544489999999996 4677789999887 58887 455554
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-23 Score=188.08 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=109.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cc--cccEEEEccCCCCCCCCCHHHHH
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KF--RSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~--~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
+|++++|+||||||||||+++|+|+++|. +|+|.+.|.++.. .+ +..++|++|++.++|.++|++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 69999999999999999999999999984 7999999998743 12 34699999998888888999998
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.++...... ..+++..|+.+..+.. ++..++||++|||+++.+|+.++| .||
T Consensus 178 ~~~~~~~~d------------~~llDt~G~~~~~~~~-----------~~eLs~~r~~iaRal~~~P~~~lL-----vLD 229 (304)
T 1rj9_A 178 QAMKARGYD------------LLFVDTAGRLHTKHNL-----------MEELKKVKRAIAKADPEEPKEVWL-----VLD 229 (304)
T ss_dssp HHHHHHTCS------------EEEECCCCCCTTCHHH-----------HHHHHHHHHHHHHHCTTCCSEEEE-----EEE
T ss_pred HHHHhCCCC------------EEEecCCCCCCchHHH-----------HHHHHHHHHHHHHhhcCCCCeEEE-----EEc
Confidence 865321100 0123334444333333 556669999999999999994444 455
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
+.+...+++.++.+.+..|.|+|++||+.
T Consensus 230 a~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 230 AVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp TTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 55555667777777444589999999973
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-23 Score=192.28 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=122.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----------cccccEEEEccCCCCCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----------KFRSACGFMYQHDLFSP 73 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----------~~~~~ig~v~Q~~~~~~ 73 (290)
++ |.+.+|++++|+||||||||||+++|+|+.+|+ .|.|.+.|++... .+++.+.+++|.+.
T Consensus 64 ~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~--- 136 (347)
T 2obl_A 64 GL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR--- 136 (347)
T ss_dssp HH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS---
T ss_pred ee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC---
Confidence 45 889999999999999999999999999999984 7999999976311 13345788887432
Q ss_pred CCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCcc--CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 74 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ--HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 74 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
...+.+...... ..+.+.+...+ .+.. -.. +..||+|| |||++| +.+|++
T Consensus 137 --~~~~r~~~~~~~------------~~~ae~~~~~~-~~vl~~ld~--------~~~lS~g~-r~v~la---l~~p~~- 188 (347)
T 2obl_A 137 --PALERMKAAFTA------------TTIAEYFRDQG-KNVLLMMDS--------VTRYARAA-RDVGLA---SGEPDV- 188 (347)
T ss_dssp --CHHHHHHHHHHH------------HHHHHHHHTTT-CEEEEEEET--------HHHHHHHH-HHHHHH---TTCCCC-
T ss_pred --CHHHHHHHHHHH------------HHHHHHHHhcc-ccHHHHHhh--------HHHHHHHH-HHHHHH---cCCCCc-
Confidence 233322211100 00111111111 0000 012 34499999 899999 688877
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHH
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRELTS-QRKK-----TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 218 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~l~~-~~g~-----tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 218 (290)
|+|||+.....+.+++.++.+ +.|. ||+++|||+. ..+||++++|.+|+++.++++.+.
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 999999999999999999844 4587 9999999985 578999999999999999877653
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-22 Score=179.43 Aligned_cols=129 Identities=22% Similarity=0.331 Sum_probs=93.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFM 84 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~ 84 (290)
++| +++|++++|+||||||||||+++|+|+++|. .+|+|.++|.++. |++|+...+
T Consensus 19 ~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~--------~~~~~~~~~------------ 74 (261)
T 2eyu_A 19 ELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE--------YVFKHKKSI------------ 74 (261)
T ss_dssp HGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC--------SCCCCSSSE------------
T ss_pred HHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce--------eecCCccee------------
Confidence 455 8999999999999999999999999999873 1699999887643 333321100
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHH
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~ 164 (290)
. .. ..+++.. ..| |++||++|+.+|+++++|||| |+.+
T Consensus 75 --v---~q--------------~~~gl~~--------------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 --V---NQ--------------REVGEDT--------------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp --E---EE--------------EEBTTTB--------------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred --e---eH--------------HHhCCCH--------------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 0 00 0122211 113 899999999999999999999 9888
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
...++ +.. . .|.+|++++|+.. +...+||+++|..
T Consensus 113 ~~~~l---~~~-~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETAL---RAA-E-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HHH-H-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HHH-c-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 65543 333 3 4899999999963 5788999887754
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-24 Score=186.69 Aligned_cols=146 Identities=17% Similarity=0.158 Sum_probs=114.2
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCC--CCCCHHHHHHHHHHh
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS--PSLTVYEHLYFMALL 87 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~--~~lTv~e~l~~~~~~ 87 (290)
.++|++++|+||||||||||+++|+|++.| .++|++|++.++ ..+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNYD- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT-
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCCC-
Confidence 578999999999999999999999998643 489999988766 56799888665321
Q ss_pred cCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHH----HHHHHHHHHHHhCCCeEEEeCCCCC----
Q psy2520 88 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE----RKRLSFATELLTDPALLLCDEPTTG---- 159 (290)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGq----rqRv~ia~aL~~~p~llllDEPtsg---- 159 (290)
.+.... .+.+.++++.+++.+..+.+ +..+|+|| +||+++|++++.+|.++++||||++
T Consensus 61 -~~~~~~----~~~~~~~l~~~~~~~~~~~~--------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~ 127 (211)
T 3asz_A 61 -HPDAFD----LALYLEHAQALLRGLPVEMP--------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDL 127 (211)
T ss_dssp -SGGGBC----HHHHHHHHHHHHTTCCEEEC--------CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSE
T ss_pred -Chhhhh----HHHHHHHHHHHHcCCCcCCC--------cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCE
Confidence 111111 23356677888887766665 34599996 4788999999999999999999999
Q ss_pred ---CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 160 ---LDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 160 ---LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
||+....++.+.+++...++|.|++.++|+.
T Consensus 128 ~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 128 KVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999886455689999999974
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=155.36 Aligned_cols=80 Identities=35% Similarity=0.462 Sum_probs=70.8
Q ss_pred CCCCChHHHHHHHHH------HHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCe
Q psy2520 127 KVVLSGGERKRLSFA------TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 200 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia------~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~ 200 (290)
+..||||||||++|| |+|+.+|+++||||||+|||+.++..+.+.|+++. +.|.|||++||++ ++..+||+
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~~tiiivsH~~--~~~~~~d~ 131 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL-KKIPQVILVSHDE--ELKDAADH 131 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTG-GGSSEEEEEESCG--GGGGGCSE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHH-ccCCEEEEEEChH--HHHHhCCE
Confidence 456999999999886 89999999999999999999999999999999984 4489999999996 46789999
Q ss_pred EEEE--eCCeE
Q psy2520 201 IILL--ADSRT 209 (290)
Q Consensus 201 v~~l--~~G~i 209 (290)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=177.47 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=67.8
Q ss_pred CCCChHHHHHHHHHHHHH----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 128 VVLSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++ ...+.++|++||+. .....||+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRH-RNPDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHH-CBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHH-hcCCCEEEEEECCH--HHHHhCCEEEE
Confidence 359999999999999999 579999999999999999999999999998 44478999999984 46788999999
Q ss_pred Ee
Q psy2520 204 LA 205 (290)
Q Consensus 204 l~ 205 (290)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=193.37 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=95.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||.+++|++++|+||||||||||||+++++.... ..|. .+.. ....++++ +.++..+.+.++
T Consensus 664 ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa-~~~~i~~~---d~i~~~ig~~d~--- 728 (918)
T 3thx_B 664 NNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPA-EEATIGIV---DGIFTRMGAADN--- 728 (918)
T ss_dssp EEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSS-SEEEEECC---SEEEEEC--------
T ss_pred ccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccc-hhhhhhHH---HHHHHhCChHHH---
Confidence 3799999999999999999999999999998653210 0111 0000 00112211 111221122111
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
.... .+.+|+||+|++.|+++ +.+|+++||||||+|||+.
T Consensus 729 -------------------------------l~~~--------~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 729 -------------------------------IYKG--------RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTH 768 (918)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHH
T ss_pred -------------------------------HHHh--------HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHH
Confidence 1112 24499999999999999 8999999999999999999
Q ss_pred HHHHHH-HHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE
Q psy2520 164 SASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 201 (290)
Q Consensus 164 ~~~~i~-~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v 201 (290)
....+. .+++.++++.|.|+|++||++ ++..++|+.
T Consensus 769 ~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 769 DGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 999987 788887555689999999996 355677654
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-22 Score=199.36 Aligned_cols=165 Identities=16% Similarity=0.180 Sum_probs=112.4
Q ss_pred EEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC-------ccccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE-------GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~-------~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
++|+|||||||||||++|+|+..|. .+|.|+++|.++. ..+++.+||+||+..+++.+||.+|+.+.....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC---------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998772 3799999999862 146778999999999999999999998754221
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC------CCCCCH
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP------TTGLDS 162 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP------tsgLD~ 162 (290)
... ..++ | ++++.++.+....|+++|+||| |+|||+
T Consensus 126 ~~~----------------~~~~-------------------s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~ 167 (608)
T 3szr_A 126 AGE----------------GMGI-------------------S---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPA 167 (608)
T ss_dssp HCS----------------SSCC-------------------C---SCCEEEEEEESSSCCEEEEECCC------CCSSC
T ss_pred cCC----------------cccc-------------------c---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCH
Confidence 000 0011 1 0112222233458999999999 999999
Q ss_pred HHHHHHHHHHHHHHh-cCCcEEEEEeCCCc------HHHHhhc-----CeEEEEeCCeEEEEcCHHHHHH
Q psy2520 163 FSASKLIRMMRELTS-QRKKTVLCTIHQPS------SELIDMF-----DKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~-~~g~tii~~tH~~~------~~~~~~~-----d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
..+.++.++++++.. ..+.++++++|+.. ..+.+.. ..|+++.++.++..|+.+++..
T Consensus 168 ~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 168 DIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp SHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 999999999999633 34788999999864 1122222 4578899998887777654433
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-21 Score=194.44 Aligned_cols=127 Identities=24% Similarity=0.180 Sum_probs=95.6
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC-CCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLP-DDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~-~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
|+||. |++++|+||||||||||||+|+|+.. +. .|.+. . ..+..+++++| +++.+++.||+.+
T Consensus 571 disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------p-a~~~~i~~v~~---i~~~~~~~d~l~~ 634 (765)
T 1ewq_A 571 DLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------P-AEEAHLPLFDG---IYTRIGASDDLAG 634 (765)
T ss_dssp EEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------S-SSEEEECCCSE---EEEECCC------
T ss_pred eccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------e-hhccceeeHHH---hhccCCHHHHHHh
Confidence 56666 99999999999999999999999864 32 46542 1 12345788776 4555666655321
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHH--HhCCCeEEEeCC---CC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL--LTDPALLLCDEP---TT 158 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL--~~~p~llllDEP---ts 158 (290)
++|+|+++++.+|+++ +.+|+++||||| |+
T Consensus 635 ---------------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs 669 (765)
T 1ewq_A 635 ---------------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTS 669 (765)
T ss_dssp ---------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSC
T ss_pred ---------------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCC
Confidence 2899999999999999 999999999999 99
Q ss_pred CCCHHHH-HHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 159 GLDSFSA-SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 159 gLD~~~~-~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
+||+.+. ..+++.|.+ .|.|+|++||+. ++..++
T Consensus 670 ~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 670 SLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp HHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC
T ss_pred CcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh
Confidence 9999876 467777765 378999999995 455555
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-21 Score=181.12 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=102.2
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCC-CCccE-EEECCEecCccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRL--PDDC-IIDGD-IRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~--~~~~-~~~G~-I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
++.+++|++++|+||||||||||++.+++.. +|+. ...|. |+|++++.. .++++++++|...+++. ++.+|+.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~v~~ni~ 201 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHIY 201 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-HHGGGEE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-HHhhCEE
Confidence 4678999999999999999999999999987 5420 00267 888886641 23456777776544432 4444432
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH-------hCCCeEEEeC
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-------TDPALLLCDE 155 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~-------~~p~llllDE 155 (290)
+... . -|.+++|++.++++++ .+|+++|+||
T Consensus 202 ~~~~-------------------------------~-----------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs 239 (349)
T 1pzn_A 202 VARA-------------------------------F-----------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS 239 (349)
T ss_dssp EEEC-------------------------------C-----------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEET
T ss_pred EEec-------------------------------C-----------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeC
Confidence 2100 0 1345566666666665 6899999999
Q ss_pred CCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 156 PTTGLDSFS------------ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 156 PtsgLD~~~------------~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
||+++|+.. ..+++..|++++++.|.|||+++|... .....++....+..|+++.++
T Consensus 240 ~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 240 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp SSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTT
T ss_pred chHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeec
Confidence 999999862 466777788876667999999999863 444344455556666655443
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=163.37 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=106.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
-+.+|++++|+||||||||||++.+++.... |.++ .|.+... ...+.|+..++... .+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~-----g~~~-~g~~~~~--~~~v~~~~~e~~~~---~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPDL-LEVGELP--TGPVIYLPAEDPPT---AIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCCT-TCCCCCC--CCCEEEEESSSCHH---HHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCc-CCCccCC--CccEEEEECCCCHH---HHHHHHH---HHH
Confidence 4789999999999999999999999986543 6653 3544321 34577876654210 1111111 111
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC--CCCHHHH-
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT--GLDSFSA- 165 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts--gLD~~~~- 165 (290)
. .... ....++++.+++.+..++. +..||+||+|++ ++++.+|+++++||||+ ++|+...
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~--------~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~ 154 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL--------PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASG 154 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC--------CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC--------cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchH
Confidence 1 0111 1235677888887777666 456999998765 68889999999999999 9998544
Q ss_pred --HHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 166 --SKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 166 --~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
.++++.|++++++.|+|||+++|+.
T Consensus 155 ~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 155 PMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 8888999998666699999999986
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-20 Score=161.73 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=105.2
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-ccc---ccEEEEccCCCCCCCCCHHHHHHHH
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-KFR---SACGFMYQHDLFSPSLTVYEHLYFM 84 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-~~~---~~ig~v~Q~~~~~~~lTv~e~l~~~ 84 (290)
.+.+|++++|+||||||||||++.|++...+. .|.|.+.+.+... .+. ..+++.+|+.... .+.+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------- 87 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII------- 87 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE-------
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE-------
Confidence 68899999999999999999999999877652 4667664433211 000 1122222210000 0000
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC--eEEEeCCCCCC--
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--LLLCDEPTTGL-- 160 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~--llllDEPtsgL-- 160 (290)
. +.+...++ .... ....|.++.++...+.+...+|+ ++++||||+.+
T Consensus 88 --~---------------~~~~~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~ 138 (235)
T 2w0m_A 88 --I---------------DALMKEKE-DQWS-----------LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD 138 (235)
T ss_dssp --E---------------ECCC-----CTTB-----------CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS
T ss_pred --E---------------eccccccC-ceee-----------ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC
Confidence 0 00000000 0001 12259999999888888888999 99999999887
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc-------HHHHhhcCeEEEEeCC
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPS-------SELIDMFDKIILLADS 207 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~-------~~~~~~~d~v~~l~~G 207 (290)
|+..+.++++.|++++++.|.|||+++|+.. ..+..+||++++|+..
T Consensus 139 d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 139 KPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp CGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9999999999999997677999999999962 2378899999999864
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-20 Score=191.34 Aligned_cols=153 Identities=17% Similarity=0.114 Sum_probs=104.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.|+||. ++|++++|+||||||||||||+|+|+.... ..|. .+.. .+..+++++| +++.+++.+++..
T Consensus 599 ndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G~------~vpa-~~~~i~~~~~---i~~~~~~~d~l~~ 665 (800)
T 1wb9_A 599 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIGS------YVPA-QKVEIGPIDR---IFTRVGAADDLAS 665 (800)
T ss_dssp EEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTTC------CBSS-SEEEECCCCE---EEEEEC-------
T ss_pred eccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcCc------ccch-hcccceeHHH---HHhhCCHHHHHHh
Confidence 468888 899999999999999999999999975321 1231 1111 1234666655 4555566655432
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
+ .+.+|+++++ ++.+..++.+|+++|||||++|+|+.
T Consensus 666 ~------------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 666 G------------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred h------------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 1 1126777664 44455568999999999999999998
Q ss_pred HHHHH-HHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcC
Q psy2520 164 SASKL-IRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 214 (290)
Q Consensus 164 ~~~~i-~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~ 214 (290)
....+ +.+++.++++.|.++|++||++ ++..++|++..+.+|++.+...
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEc
Confidence 77775 7888888543589999999996 3567899887788887766543
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-22 Score=171.48 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=103.7
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHHHHHHhcCc
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD 90 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~ 90 (290)
|++++|+||||||||||+++|+|+++ + +| |.++|.+... .+++.+||++|+. .... +++. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l~---~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPLS---RVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEEE---ECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehhh---ccc--
Confidence 78999999999999999999999987 4 69 9999987743 3678899999964 1111 1110 000
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHH-HHHH---HHHhCCCeEEEeC--CCCCCCHH
Q psy2520 91 RRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRL-SFAT---ELLTDPALLLCDE--PTTGLDSF 163 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv-~ia~---aL~~~p~llllDE--PtsgLD~~ 163 (290)
++..+ ..+..++.. ...+|+|||+++ ++++ |++.+|++||+|| |+..+|+.
T Consensus 66 ------------------~~~~~~~~~~~v~~~----~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~ 123 (189)
T 2i3b_A 66 ------------------LEPPPGKRECRVGQY----VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123 (189)
T ss_dssp ------------------CCCCSSSCCEESSSS----EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSH
T ss_pred ------------------ccCCccccccccceE----EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHH
Confidence 01111 011123321 234999999988 4444 5799999999999 89999997
Q ss_pred HHHHHHHHHHHHHhcCCcEEEE----EeCCCcHHHHhhcCeEEEEeCCeEEEE
Q psy2520 164 SASKLIRMMRELTSQRKKTVLC----TIHQPSSELIDMFDKIILLADSRTAFI 212 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~----~tH~~~~~~~~~~d~v~~l~~G~i~~~ 212 (290)
....+.++++ . ..++|+ ++|+.. ..+.|+|..+.+|+++.-
T Consensus 124 ~~~~l~~~l~----~-~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 124 FIQAVRQTLS----T-PGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp HHHHHHHHHH----C-SSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEEC
T ss_pred HHHHHHHHHh----C-CCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEe
Confidence 6665555554 2 234443 349852 246677777788887753
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-20 Score=172.41 Aligned_cols=151 Identities=17% Similarity=0.103 Sum_probs=85.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcC-CCCCCCCccEEEECCEecCcc-ccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQR-LPDDCIIDGDIRVNGKPVEGK-FRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~-~~~~~~~~G~I~i~G~~~~~~-~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.+++|.+ +|+||||||||||+++|+|. ..|. +| |.++|.++... ..+.+++++|.+.+...+||+|++
T Consensus 15 ~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~ 84 (301)
T 2qnr_A 15 KGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTP 84 (301)
T ss_dssp ---CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC
T ss_pred cCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhh
Confidence 3566766 99999999999999999997 6663 68 88888776442 235689999988888889999988
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC-CC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT-GL 160 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts-gL 160 (290)
.++..... . +.....+..+. +..+.. +.++|||||||+.+||+++ ++++||||+ +|
T Consensus 85 g~~~~~~~-~----e~~~~l~~~l~------~~~~~~--------~~~~sgg~rqrv~~ara~~----ll~ldePt~~~L 141 (301)
T 2qnr_A 85 GYGDAINC-R----DCFKTIISYID------EQFERY--------LHDESGLNRRHIIDNRVHC----CFYFISPFGHGL 141 (301)
T ss_dssp ----------------CTTHHHHHH------HHHHHH--------HHHHTSSCCTTCCCCCCCE----EEEEECSSSSSC
T ss_pred hhhhhcCc-H----HHHHHHHHHHH------HHHHHH--------HHHhCHHhhhhhhhhhhhh----eeeeecCcccCC
Confidence 77543210 0 00000111111 112333 2349999999999999885 999999998 59
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
|+... ++++++..+.+.++|+++||+.
T Consensus 142 d~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 142 KPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 99873 5666764434789999999974
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-20 Score=162.30 Aligned_cols=148 Identities=17% Similarity=0.178 Sum_probs=101.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCH----HHHHHHH
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTV----YEHLYFM 84 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv----~e~l~~~ 84 (290)
..++|++++|+||||||||||+++|+|+.+|+ ...|.|.+.+++.....+..++|+||++.+|+.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 46899999999999999999999999998862 257999998877644445679999997544443333 1111110
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHH
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~ 164 (290)
. . +.|-.+++ +..++..++++||| ||+.+
T Consensus 91 ~-------------------------------~------------~yg~~~~~---v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 91 G-------------------------------N------------YYGTSREA---IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp T-------------------------------E------------EEEEEHHH---HHHHHTTTCEEEEE-----CCHHH
T ss_pred h-------------------------------c------------cCCCCHHH---HHHHHhcCCeEEEE-----ECHHH
Confidence 0 0 11111221 34455668999999 99999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHHHH
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 223 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 223 (290)
+.++.+.+. .+.||++++|++. ++.. |+ +..| .++++++...+.
T Consensus 120 ~~~i~~~l~-----~~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 120 AQQIRQKMP-----HARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHHHHHCT-----TCEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred HHHHHHHcc-----CCEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHHHHH
Confidence 999998775 4799999999973 4444 43 6777 577887765443
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-19 Score=165.94 Aligned_cols=128 Identities=25% Similarity=0.329 Sum_probs=87.7
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
...+|++++|+|||||||||||++|+|+++|. ..|.|...+.++....+...++++|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeeccc---------------
Confidence 45688999999999999999999999998873 1466654433332222223334444211100
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 168 (290)
.++..+ +||+||.++|++|++|||| |+.+
T Consensus 182 ----------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~---- 210 (356)
T 3jvv_A 182 ----------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLET---- 210 (356)
T ss_dssp ----------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHH----
T ss_pred ----------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHH----
Confidence 123222 8999999999999999999 6555
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCC
Q psy2520 169 IRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 207 (290)
Q Consensus 169 ~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G 207 (290)
++.+.+. .+.|.+|++++|+.+ . ...+||++.|..|
T Consensus 211 ~~~~~~~-~~~G~~vl~t~H~~~-~-~~~~dRli~l~~~ 246 (356)
T 3jvv_A 211 IRLALTA-AETGHLVFGTLHTTS-A-AKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHH-HHTTCEEEEEESCSS-H-HHHHHHHHHTSCH
T ss_pred HHHHHHH-HhcCCEEEEEEccCh-H-HHHHHHHhhhcCc
Confidence 3344444 345899999999974 4 4889999988654
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-21 Score=163.44 Aligned_cols=170 Identities=18% Similarity=0.202 Sum_probs=112.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcCchh
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR 92 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~ 92 (290)
|++++|+||||||||||+++|++ + .+|.++++|.++... ..+++++|.....+.+++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~---~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---Q---LDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---H---SSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---c---cCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999998 3 258999988765322 235677775544455678888776543210000
Q ss_pred hhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCC--ChHHHHHHHHHH------HHHhCCCeEEEeCCCCCCCHHH
Q psy2520 93 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL--SGGERKRLSFAT------ELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~L--SgGqrqRv~ia~------aL~~~p~llllDEPtsgLD~~~ 164 (290)
. ..+++.+. .....+. ...+ |+|++|++.++. +++.+|+...+|+ ++|+..
T Consensus 74 ~---------~~ild~~~-~~~~~~~--------~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 74 N---------DVVLDYIA-FPDEAEA--------LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp C---------EEEEESCC-CHHHHHH--------HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred C---------cEEEeecc-CHHHHHH--------HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0 00000000 0000000 0124 888888888888 9999999888884 899988
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCC-CcHHHHhhcCeEEEEeCCeEEEEcCHH
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTIHQ-PSSELIDMFDKIILLADSRTAFIGSKD 216 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~tH~-~~~~~~~~~d~v~~l~~G~i~~~g~~~ 216 (290)
... ++.+..+ .+.+.++|.+||. +. ++.++||+|+ ++|++++.|+++
T Consensus 133 ~~~-~~~~~~~-~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~ 180 (189)
T 2bdt_A 133 LEL-VEEFESK-GIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGD 180 (189)
T ss_dssp GHH-HHHHHHT-TCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC----
T ss_pred HHH-HHHHhhc-CCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCC
Confidence 888 8888887 4557899999998 74 6889999998 999999999886
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-21 Score=180.94 Aligned_cols=162 Identities=12% Similarity=0.065 Sum_probs=102.6
Q ss_pred cceEEEEeC--CeEEEEECCCCChHHHHHHHHHcCCCCCCCCc----cEEEEC----CEecCc---cccccEEEEccCCC
Q psy2520 4 LELTGAALS--GTLVAIMGASGAGKSTLLAALSQRLPDDCIID----GDIRVN----GKPVEG---KFRSACGFMYQHDL 70 (290)
Q Consensus 4 ~~is~~~~~--Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~----G~I~i~----G~~~~~---~~~~~ig~v~Q~~~ 70 (290)
..|++.+.+ |+.++|+||||||||||+++|+|+++|. + |+|+++ |.++.. .+ ..|++++|+..
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHH
Confidence 458888999 9999999999999999999999999883 6 776653 222100 01 11333332211
Q ss_pred CCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH-hCCC
Q psy2520 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-TDPA 149 (290)
Q Consensus 71 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~-~~p~ 149 (290)
++ ..|+.+|+.++ ..+..++. +..+|+|++|+..+++++. .+|+
T Consensus 235 ~~-~~t~~~nl~~~--------------------------~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~ 279 (365)
T 1lw7_A 235 DY-AVRHSHKIAFI--------------------------DTDFITTQ--------AFCIQYEGKAHPFLDSMIKEYPFD 279 (365)
T ss_dssp HH-HHHHCSSEEEE--------------------------SSCHHHHH--------HHHHHHHSCCCHHHHHHHHHSCCS
T ss_pred HH-HHhccCCEEEE--------------------------eCCchHHH--------HHHHHHcCCCCHHHHHHHhhcCCC
Confidence 00 01111111110 00111111 1126677788888888774 6999
Q ss_pred eEEEeC---CC------CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 150 LLLCDE---PT------TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 150 llllDE---Pt------sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
++|||| |+ .++|+..+..+.+.|+++.++.|.+|++++|. . +..++++++.++++
T Consensus 280 lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 280 VTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK 343 (365)
T ss_dssp EEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH
T ss_pred EEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH
Confidence 999999 65 58999999999999998755558899999975 2 56778887776653
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-17 Score=136.80 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=71.1
Q ss_pred CCCCChHHHHHHHHHHHHHhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEE
Q psy2520 127 KVVLSGGERKRLSFATELLTD----PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 202 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL~~~----p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~ 202 (290)
+..||||||||++||++|+.+ |+++||||||++||+.++..+.++|+++ .+ +.++|++||+. .....||+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~-~~-~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKES-SK-ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH-TT-TSEEEEECSCH--HHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHh-cc-CCEEEEEEecH--HHHHhCCEEE
Confidence 456999999999999999854 6999999999999999999999999998 43 46899999984 5678999998
Q ss_pred EE--eCCeE-EEEcCHHHH
Q psy2520 203 LL--ADSRT-AFIGSKDAA 218 (290)
Q Consensus 203 ~l--~~G~i-~~~g~~~~~ 218 (290)
.+ .+|.. +...+.++.
T Consensus 138 ~v~~~~g~s~~~~~~~~~~ 156 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKA 156 (173)
T ss_dssp EEEEETTEEEEEECCHHHH
T ss_pred EEEecCCEEEEEEEEcHHH
Confidence 65 46643 233444443
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-17 Score=141.47 Aligned_cols=147 Identities=17% Similarity=0.127 Sum_probs=95.1
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
-+.+|++++|+||||||||||++.+++ .+. .+.++++. +..+ +.. .+.-.....
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~---~~v~~i~~----------------~~~~----~~~-~~~~~~~~~ 69 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL--LSG---KKVAYVDT----------------EGGF----SPE-RLVQMAETR 69 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH--HHC---SEEEEEES----------------SCCC----CHH-HHHHHHHTT
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH--HcC---CcEEEEEC----------------CCCC----CHH-HHHHHHHhc
Confidence 478999999999999999999999999 321 22233322 2111 111 111111110
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHH--HHHHHHHHHHHhC-CCeEEEeCCCCCCCHHH-
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE--RKRLSFATELLTD-PALLLCDEPTTGLDSFS- 164 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGq--rqRv~ia~aL~~~-p~llllDEPtsgLD~~~- 164 (290)
. ... +++++.+.+ ..+|+++ +++++.+++++.+ |+++++||||+.+|+..
T Consensus 70 ~---~~~-------~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~ 123 (220)
T 2cvh_A 70 G---LNP-------EEALSRFIL----------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEEN 123 (220)
T ss_dssp T---CCH-------HHHHHHEEE----------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGG
T ss_pred C---CCh-------HHHhhcEEE----------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCc
Confidence 0 000 122222211 1245554 5688888899886 99999999999999743
Q ss_pred -------HHHHHHHHHHHHhcCCcEEEEEeCCCcH------------HHHhhcCeEEEEeCC
Q psy2520 165 -------ASKLIRMMRELTSQRKKTVLCTIHQPSS------------ELIDMFDKIILLADS 207 (290)
Q Consensus 165 -------~~~i~~~l~~l~~~~g~tii~~tH~~~~------------~~~~~~d~v~~l~~G 207 (290)
..++++.|++++++.|.|||+++|.... .+...||++++|+..
T Consensus 124 ~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 124 RSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 3556667888866668999999998531 467789999999864
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.5e-20 Score=154.61 Aligned_cols=150 Identities=14% Similarity=0.071 Sum_probs=95.3
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc--ccccEEEEccCCCCCCCCCHHHHHHHHHH
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK--FRSACGFMYQHDLFSPSLTVYEHLYFMAL 86 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~--~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~ 86 (290)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++... .++.++|++|+.. +.+||.+++.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 4789999999999999999999999997 32 69999999765321 2234677777543 35688888876542
Q ss_pred hcCchhhhHHHHHHHHHHHHHHcCCCCcc--CcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHH
Q psy2520 87 LKLDRRVKAYQRIALINSLLIELGLMNSQ--HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~ 164 (290)
........ ..++.++..+++.... +.. +..+|+|++|++.++|++..+|+++ +|+..
T Consensus 78 ~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~--------~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~ 136 (191)
T 1zp6_A 78 RYAKEGYF-----VILDGVVRPDWLPAFTALARP--------LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLV 136 (191)
T ss_dssp HHHHTSCE-----EEECSCCCTTTTHHHHTTCSC--------EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHH
T ss_pred HHhccCCe-----EEEeccCcHHHHHHHHhcCCC--------eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHH
Confidence 21000000 0000000111111111 222 2349999999999999999999876 68888
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEe
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTI 187 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~t 187 (290)
...+.+.+..+. ..+..+|.++
T Consensus 137 ~~~~~~~~~~l~-~~~~~~i~t~ 158 (191)
T 1zp6_A 137 VADLHSQFADLG-AFEHHVLPVS 158 (191)
T ss_dssp HHHHHHHTTCCG-GGGGGEEECT
T ss_pred HHHHHHHHhccC-cccccEEECC
Confidence 888888777663 2233344444
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-20 Score=163.54 Aligned_cols=143 Identities=14% Similarity=0.082 Sum_probs=100.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHH---cCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHh-
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALS---QRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL- 87 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~---G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~- 87 (290)
++++++|+||||||||||+++|+ |+..++ +|+|.++|.+........+++++|+..+++..++.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999999999999 998874 79998877543222334456677887788888999999875421
Q ss_pred -------cCchhhhHHHHHHHHHHHHH--HcC------------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHH-H
Q psy2520 88 -------KLDRRVKAYQRIALINSLLI--ELG------------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL-L 145 (290)
Q Consensus 88 -------~~~~~~~~~~~~~~~~~~l~--~~~------------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL-~ 145 (290)
.... .... .+..+.. .++ +....++. +..||| |+ ++| +
T Consensus 103 ~~~~~il~g~~-~~~~----~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~--------~~~lSg----rv---~al~~ 162 (246)
T 2bbw_A 103 RGQHWLLDGFP-RTLG----QAEALDKICEVDLVISLNIPFETLKDRLSRRW--------IHPPSG----RV---YNLDF 162 (246)
T ss_dssp TTSCEEEESCC-CSHH----HHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE--------EETTTT----EE---EETTT
T ss_pred CCCeEEEECCC-CCHH----HHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC--------CcCCCC----Cc---ccccc
Confidence 1100 1111 1112211 112 12223444 344999 66 677 9
Q ss_pred hCCCeEEEe----CCCCCCCHHHHHHHHHHHHHHHh
Q psy2520 146 TDPALLLCD----EPTTGLDSFSASKLIRMMRELTS 177 (290)
Q Consensus 146 ~~p~llllD----EPtsgLD~~~~~~i~~~l~~l~~ 177 (290)
.+|++++|| |||++||+.+...+.+.|+.+.+
T Consensus 163 ~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 163 NPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp SCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999843
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-17 Score=157.21 Aligned_cols=125 Identities=21% Similarity=0.302 Sum_probs=94.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 89 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~ 89 (290)
+++|++++|+||||||||||+++|+|+++|. .+|+|.+.|.++...++..++|++|..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~-------------------- 190 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE-------------------- 190 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE--------------------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee--------------------
Confidence 6899999999999999999999999998873 169998777665434566788888841
Q ss_pred chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHH
Q psy2520 90 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI 169 (290)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~ 169 (290)
+|+. +..+ +.+|+++|..+|+++++|||+ |+.+..
T Consensus 191 -------------------~g~~--------------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~--- 225 (372)
T 2ewv_A 191 -------------------VGED--------------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE--- 225 (372)
T ss_dssp -------------------BTTT--------------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---
T ss_pred -------------------cCCC--------------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---
Confidence 1111 1125 469999999999999999999 776543
Q ss_pred HHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 170 RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 170 ~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
..++.. ..|.+++.++|+. + +...+||++.|.
T Consensus 226 ~~l~~~--~~g~~vi~t~H~~-~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 226 TALRAA--ETGHLVFGTLHTN-T-AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHH--TTTCEEEECCCCC-S-HHHHHHHHHHTS
T ss_pred HHHHHH--hcCCEEEEEECcc-h-HHHHHHHHHHhc
Confidence 344443 3588999999995 3 678888887664
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-20 Score=173.09 Aligned_cols=160 Identities=15% Similarity=0.153 Sum_probs=106.2
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC--------CCCCCCccEEEECCEecCc-------------------cccccEEEE-
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL--------PDDCIIDGDIRVNGKPVEG-------------------KFRSACGFM- 65 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~--------~~~~~~~G~I~i~G~~~~~-------------------~~~~~ig~v- 65 (290)
++++|+|+||||||||||.|.|.. .| ..|+|.++|.++.. .+++.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~---d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN---EFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS---SCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe---cCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 45 37999999988743 123457777
Q ss_pred --ccCCCCCCCCCHHHHHHHHHHhcCchhh---hHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHH
Q psy2520 66 --YQHDLFSPSLTVYEHLYFMALLKLDRRV---KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSF 140 (290)
Q Consensus 66 --~Q~~~~~~~lTv~e~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~i 140 (290)
+|+..+++..+|.|+..++......... ........+..++..+++.+..++. .++|+||+||+..
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~---------~~ls~g~~Q~~~a 152 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM---------NQFTIAQSQVGYA 152 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH---------HHCHHHHHHHHTC
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH---------hhchHHHHHHHhC
Confidence 6776666677777776543100000000 0000011112223334444444433 1389999999998
Q ss_pred HHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcC
Q psy2520 141 ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 199 (290)
Q Consensus 141 a~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d 199 (290)
+++++.+|+++ ||| ..+.+.|+++ . .+.+|+++||++. .+..++|
T Consensus 153 d~ill~k~dl~--de~---------~~l~~~l~~l-~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 153 DRILLTKTDVA--GEA---------EKLHERLARI-N-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp SEEEEECTTTC--SCT---------HHHHHHHHHH-C-SSSCEEECCSSCC-CGGGGSC
T ss_pred CEEEEECcccC--CHH---------HHHHHHHHHh-C-CCCeEEEecccCC-CHHHHhC
Confidence 89999999987 998 7788888887 3 4789999999864 3444443
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-17 Score=142.14 Aligned_cols=153 Identities=17% Similarity=0.207 Sum_probs=86.5
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHc--CCCCC--CCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQ--RLPDD--CIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G--~~~~~--~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
+-+.+|++++|+||||||||||++.|++ ..++. ....|.+++++++.. ....-...
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~--------------------~~~~~~~~ 78 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF--------------------RPERLLAV 78 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC--------------------CHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc--------------------CHHHHHHH
Confidence 3478999999999999999999999999 45441 002466666654310 01100000
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHH-HHHHHHHH--hCCCeEEEeCCCCCC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR-LSFATELL--TDPALLLCDEPTTGL 160 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqR-v~ia~aL~--~~p~llllDEPtsgL 160 (290)
....... . +++++.+.+ ....+..+... +.-+..++ .+|+++++|||++.+
T Consensus 79 ~~~~g~~---~--------~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~ 132 (243)
T 1n0w_A 79 AERYGLS---G--------SDVLDNVAY---------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALY 132 (243)
T ss_dssp HHHTTCC---H--------HHHHHTEEE---------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGG
T ss_pred HHHcCCC---H--------HHHhhCeEE---------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHH
Confidence 0001000 0 011111100 01144444332 22233333 589999999999999
Q ss_pred CHH-------H-----HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHh-------------------hcCeEEEEeCC
Q psy2520 161 DSF-------S-----ASKLIRMMRELTSQRKKTVLCTIHQPSSELID-------------------MFDKIILLADS 207 (290)
Q Consensus 161 D~~-------~-----~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~-------------------~~d~v~~l~~G 207 (290)
|+. . ..+++..|++++++.|.|||+++|... .... +||.+++|+.|
T Consensus 133 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 133 RTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 985 3 355677777776666999999999753 3222 78999999865
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-17 Score=152.00 Aligned_cols=130 Identities=18% Similarity=0.094 Sum_probs=90.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC-CCCCCccEEEEC-CEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLP-DDCIIDGDIRVN-GKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~-~~~~~~G~I~i~-G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
.+|++++|+||||||||||+|+|+|... +. +|+|.++ |+......+..+++++|+..+++..+|+++. +.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~-----l~ 284 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG-----LW 284 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC-------------CCCEEEECTTSCEEEECHHHHTCC-----CC
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh-----hc
Confidence 3799999999999999999999999998 74 7999987 7654333456799999998888888898841 11
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 168 (290)
.....+....+.++++.+++.++.+.. +.+|| ||+||++||+++ +++.-....
T Consensus 285 ---~l~~~e~~~~~~e~l~~~gl~~f~~~~--------~~~lS-G~~~r~ala~gl---------------i~~~R~~~y 337 (358)
T 2rcn_A 285 ---HLEPEQITQGFVEFHDYLGHCKYRDCK--------HDADP-GCAIREAVENGA---------------IAETRFENY 337 (358)
T ss_dssp ---CCCHHHHHHTSGGGGGGTTCSSSTTCC--------SSSCT-TCHHHHHHHHTS---------------SCHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHcCCchhcCCC--------cccCC-HHHHHHHHHhcC---------------CCHHHHHHH
Confidence 122233345567888999998888887 45599 999999999864 344444455
Q ss_pred HHHHHHH
Q psy2520 169 IRMMREL 175 (290)
Q Consensus 169 ~~~l~~l 175 (290)
.+++.++
T Consensus 338 ~~l~~e~ 344 (358)
T 2rcn_A 338 HRILESM 344 (358)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666665
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-19 Score=150.29 Aligned_cols=159 Identities=17% Similarity=0.070 Sum_probs=89.9
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCC-----CCCCCCccEEEECCEecCccccccEEEEccCCCCC----CCCC--
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRL-----PDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS----PSLT-- 76 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~-----~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~----~~lT-- 76 (290)
|.+.+|..++|+|+||||||||++.|+|.. .| +.|.+.+.+.-. +...+-++ .-+.+. +...
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~~~~~~---~~~~~~l~-Dt~G~~~~~~~~~~~~ 93 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK---TPGRTQLINLFE---VADGKRLV-DLPGYGYAEVPEEMKR 93 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEE---EETTEEEE-ECCCCC------CCHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC---CCccceeeEEEE---ecCCEEEE-ECcCCcccccCHHHHH
Confidence 667899999999999999999999999987 44 356654322100 00011111 111110 0000
Q ss_pred -HHHHHHHHHHh-cCc--------hhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHH-HHHHHHH
Q psy2520 77 -VYEHLYFMALL-KLD--------RRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKR-LSFATEL 144 (290)
Q Consensus 77 -v~e~l~~~~~~-~~~--------~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqR-v~ia~aL 144 (290)
....+...... ... ...........+.+++...++... ..++ +..+|+||+|| +..++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK--------~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 94 KWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK--------ADKLASGARKAQLNMVREA 165 (210)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC--------GGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec--------ccCCCchhHHHHHHHHHHH
Confidence 11112111110 000 000000111234556666776543 2344 34499999999 8999999
Q ss_pred HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE
Q psy2520 145 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 182 (290)
Q Consensus 145 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t 182 (290)
+.+|.++++|||||++|+.+..++++.|.++.. .|.|
T Consensus 166 ~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~-~~~~ 202 (210)
T 1pui_A 166 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS-EMQP 202 (210)
T ss_dssp HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred HHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh-hccc
Confidence 999999999999999999999999999999843 3543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-18 Score=165.58 Aligned_cols=153 Identities=13% Similarity=0.194 Sum_probs=105.9
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------c--ccccEEEEccCCCCC
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------K--FRSACGFMYQHDLFS 72 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~--~~~~ig~v~Q~~~~~ 72 (290)
..++||.+.+|++++|+||||||||||+++|+|++++. .|+|.++|.+... . .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46899999999999999999999999999999999874 6999998877632 1 256799999998888
Q ss_pred CCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHH-HhCC-Ce
Q psy2520 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL-LTDP-AL 150 (290)
Q Consensus 73 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL-~~~p-~l 150 (290)
+.+||++++.++....... -+++..|+.+.... +-.-.+|++.+++++ ...| .+
T Consensus 360 p~~tV~e~l~~a~~~~~Dv------------VLIDTaGrl~~~~~------------lm~EL~kiv~iar~l~~~~P~ev 415 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNIDV------------LIADTAGRLQNKSH------------LMEELKKIVRVMKKLDVEAPHEV 415 (503)
T ss_dssp HHHHHHHHHHHHHHTTCSE------------EEECCCCSCCCHHH------------HHHHHHHHHHHHHTTCTTCSSEE
T ss_pred HHHHHHHHHHHHHhcCCCE------------EEEeCCCccchhhh------------HHHHHHHHHHHHHHhccCCCCee
Confidence 8889999998865321100 01222232211111 122334788888866 3457 35
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeC
Q psy2520 151 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188 (290)
Q Consensus 151 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH 188 (290)
||...|++|.|.. +.++.+...-+.|.|++||
T Consensus 416 LLvLDattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 416 MLTIDASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred EEEecCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 5555588886554 3344443335789999999
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-17 Score=153.99 Aligned_cols=163 Identities=12% Similarity=0.117 Sum_probs=111.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------ccc--ccEEEEccCCCCCCCCCHHHH
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFR--SACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~--~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
++|++++|+||||||||||+++|+|+++|. .|+|.+.|.++.. .++ ..+.+++|...+.|.++|++|
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999999884 7999999999753 122 246699999888999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.++....... -+++..|+.+..... ..+.-.+++++..++.+++||.++.
T Consensus 204 l~~~~~~~~d~------------vliDtaG~~~~~~~l---------------~~eL~~i~ral~~de~llvLDa~t~-- 254 (328)
T 3e70_C 204 IQHAKARGIDV------------VLIDTAGRSETNRNL---------------MDEMKKIARVTKPNLVIFVGDALAG-- 254 (328)
T ss_dssp HHHHHHHTCSE------------EEEEECCSCCTTTCH---------------HHHHHHHHHHHCCSEEEEEEEGGGT--
T ss_pred HHHHHhccchh------------hHHhhccchhHHHHH---------------HHHHHHHHHHhcCCCCEEEEecHHH--
Confidence 98764321100 012223333222222 2333348899988888888885543
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc--------HHHHhhcCeEEEEeCCeEE
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPS--------SELIDMFDKIILLADSRTA 210 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~--------~~~~~~~d~v~~l~~G~i~ 210 (290)
.++++.++.+....+.|+|++||.-. ..+....-.|.++..|+-+
T Consensus 255 -----~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 255 -----NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp -----THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred -----HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 35566667775456899999999521 1122334567777777643
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.6e-18 Score=159.87 Aligned_cols=146 Identities=15% Similarity=0.090 Sum_probs=86.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++||.+ +|+||||||||||+++|+|...+.. ..|.+.+++.+ ......+++++|++.+++.+||+||+.+
T Consensus 28 ~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~-~~~~~~~~~~~--t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~ 98 (418)
T 2qag_C 28 RGFEFTL------MVVGESGLGKSTLINSLFLTDLYSP-EYPGPSHRIKK--TVQVEQSKVLIKEGGVQLLLTIVDTPGF 98 (418)
T ss_dssp -CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCC-CCCSCC-------CCEEEEEECC------CEEEEEEECC--
T ss_pred cCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCC-CCCCcccCCcc--ceeeeeEEEEEecCCcccceeeeechhh
Confidence 4667776 9999999999999999999987521 12222222211 1123568999998888888999999887
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCC---eEEEeCCC-CC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA---LLLCDEPT-TG 159 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~---llllDEPt-sg 159 (290)
+..... ......+.+.++ .. ++.+++||++|||+++.+|+ +|++|||| ++
T Consensus 99 ~~~~~~------~~~~~~i~~~i~---------~~-----------~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~ 152 (418)
T 2qag_C 99 GDAVDN------SNCWQPVIDYID---------SK-----------FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG 152 (418)
T ss_dssp ---------------CHHHHHHHH---------HH-----------HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCS
T ss_pred hhhccc------hhhHHHHHHHHH---------HH-----------HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccC
Confidence 643210 000011122222 12 67788889999999999999 99999999 69
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
||+... .+++.+ .. +.+||+|.|..
T Consensus 153 L~~~d~----~~lk~L-~~-~v~iIlVinK~ 177 (418)
T 2qag_C 153 LKPLDI----EFMKRL-HE-KVNIIPLIAKA 177 (418)
T ss_dssp CCHHHH----HHHHHH-TT-TSEEEEEEEST
T ss_pred CCHHHH----HHHHHH-hc-cCcEEEEEEcc
Confidence 999873 455666 33 67888887764
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-17 Score=158.57 Aligned_cols=175 Identities=15% Similarity=0.105 Sum_probs=109.3
Q ss_pred cceEEEEeCCeE--EEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTL--VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~--~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.++||.+++|++ ++|+||||||||||+|+|+|+.- .|..... .. ....++.++|++|++.+++.+||.||+
T Consensus 31 ~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~-~~-~~~~~~~i~~v~Q~~~l~~~ltv~D~~ 103 (427)
T 2qag_B 31 QLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATH-TQ-PGVQLQSNTYDLQESNVRLKLTIVSTV 103 (427)
T ss_dssp HHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CC-SSCEEEEEEEEEEC--CEEEEEEEEEE
T ss_pred CCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCC-CC-ccceEeeEEEEeecCccccccchhhhh
Confidence 368899999999 99999999999999999999842 2321110 00 112345799999998888889999998
Q ss_pred HHHHHhcCchhh--hHHHHHHHHHHHHHHc-CCCC----ccCcccCCc-C-CC-CCCCCChHHHHHHHHHHHHHhCCCeE
Q psy2520 82 YFMALLKLDRRV--KAYQRIALINSLLIEL-GLMN----SQHTRIGSS-S-IT-QKVVLSGGERKRLSFATELLTDPALL 151 (290)
Q Consensus 82 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~-~l~~----~~~~~v~~~-~-~~-~~~~LSgGqrqRv~ia~aL~~~p~ll 151 (290)
.|+......... -.......+.++|... ++.. ..+.++.-- + +. ....|+-.+ +.|+++|..+++++
T Consensus 104 ~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI 180 (427)
T 2qag_B 104 GFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNII 180 (427)
T ss_dssp CCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEE
T ss_pred hhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEE
Confidence 775321100000 0011223445566654 4431 122221000 0 00 002366665 78999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHH-HHhcCCcEEEEEeCC
Q psy2520 152 LCDEPTTGLDSFSASKLIRMMRE-LTSQRKKTVLCTIHQ 189 (290)
Q Consensus 152 llDEPtsgLD~~~~~~i~~~l~~-l~~~~g~tii~~tH~ 189 (290)
++|+|+..|.+.....+.+.+++ + ...|.+|+.++.+
T Consensus 181 ~Vi~KtD~Lt~~E~~~l~~~I~~~L-~~~gi~I~~is~~ 218 (427)
T 2qag_B 181 PIIAKADAISKSELTKFKIKITSEL-VSNGVQIYQFPTD 218 (427)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHH-BTTBCCCCCCC--
T ss_pred EEEcchhccchHHHHHHHHHHHHHH-HHcCCcEEecCCC
Confidence 99999999999999999999997 7 6679999998865
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-16 Score=148.66 Aligned_cols=135 Identities=18% Similarity=0.199 Sum_probs=99.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec-Cc-cccccEEEEc-cCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV-EG-KFRSACGFMY-QHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~-~~-~~~~~ig~v~-Q~~~~~~~lTv~e~ 80 (290)
.++|+.+++|++++|+||||||||||+++|+|+++|. +|.|.++|..- .. ..+..++|++ |++.+-
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~-------- 234 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEE-------- 234 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC--------------
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccc--------
Confidence 5688999999999999999999999999999999984 79999998431 11 2566799998 653310
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
++++..++..|+.++..+|+.+++|||..
T Consensus 235 -------------------------------------------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-- 263 (361)
T 2gza_A 235 -------------------------------------------------ENAPVTAATLLRSCLRMKPTRILLAELRG-- 263 (361)
T ss_dssp -----------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS--
T ss_pred -------------------------------------------------cccccCHHHHHHHHHhcCCCEEEEcCchH--
Confidence 11122345566666677899999999986
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCe
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 208 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~ 208 (290)
.++.+.|+.+ .....|++.++|..+ ....+||+..|..+.
T Consensus 264 -----~~~~~~l~~l-~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 -----GEAYDFINVA-ASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp -----THHHHHHHHH-HTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred -----HHHHHHHHHH-hcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677777 343457899999953 678899999998774
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-16 Score=132.89 Aligned_cols=47 Identities=11% Similarity=0.163 Sum_probs=40.9
Q ss_pred HhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH
Q psy2520 145 LTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192 (290)
Q Consensus 145 ~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~ 192 (290)
+.+|++|+||||++ ++|+..+..+.+++... .+.|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~-~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYR-YNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHH-HHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHH-HHcCCCEEEEcCCChh
Confidence 45999999999985 99999999999999987 4458999999998753
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.7e-16 Score=145.33 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=48.2
Q ss_pred hCCCeEEEeCCCCCCCHHHH------------HHHHHHHHHHHhcCCcEEEEEeCCCc------------------HHHH
Q psy2520 146 TDPALLLCDEPTTGLDSFSA------------SKLIRMMRELTSQRKKTVLCTIHQPS------------------SELI 195 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~------------~~i~~~l~~l~~~~g~tii~~tH~~~------------------~~~~ 195 (290)
.+|+++++|||++.+|+... .+++..|++++++.|.|||+++|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999997543 67888899987777999999999821 1246
Q ss_pred hhcCeEEEEeCCe
Q psy2520 196 DMFDKIILLADSR 208 (290)
Q Consensus 196 ~~~d~v~~l~~G~ 208 (290)
..+|.+++|..++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6789999998764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.8e-17 Score=133.19 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=61.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcccc-ccEEEEccCCCCCCCCCHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFR-SACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~-~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
.++||++++|++++|+||||||||||+++|+|++ |. +|+|.++|.++..... .. +++|+..++ .+||.|++.
T Consensus 24 ~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~--~~~q~~~l~-~ltv~e~l~ 96 (158)
T 1htw_A 24 ILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAG--KMIYHFDLY-RLADPEELE 96 (158)
T ss_dssp HHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETT--EEEEEEECT-TCSCTTHHH
T ss_pred hccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCC--cceeccccc-cCCcHHHHH
Confidence 3678999999999999999999999999999999 73 7999999988743221 22 799988888 899999996
Q ss_pred H
Q psy2520 83 F 83 (290)
Q Consensus 83 ~ 83 (290)
+
T Consensus 97 ~ 97 (158)
T 1htw_A 97 F 97 (158)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-17 Score=140.73 Aligned_cols=138 Identities=13% Similarity=0.162 Sum_probs=87.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------ccc-ccEE----EEccCCCCCCCCCHHHHH
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFR-SACG----FMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~-~~ig----~v~Q~~~~~~~lTv~e~l 81 (290)
++++|+|+||||||||+++|+|+++|.....|.|.++|.++.. .+| +.+| +++|+..++ +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 5899999999999999999999998742237999999987421 244 3566 788876544 000
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHH-cCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeE-------EE
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIE-LGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL-------LC 153 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~ll-------ll 153 (290)
.. .. ....+.+++.. +. ..+..+++ .|||||+||++||||++.+|++. .-
T Consensus 77 -------~~----~~-~~a~l~~~i~~~l~---g~dt~i~E-------glSgGq~qri~lARall~~p~i~~~~~~a~~~ 134 (171)
T 2f1r_A 77 -------VS----EE-EGNDLDWIYERYLS---DYDLVITE-------GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVC 134 (171)
T ss_dssp -------CC----HH-HHTCHHHHHHHHTT---TCSEEEEE-------SCGGGCCCEEEECSSGGGGGGGCSSCEEEEEC
T ss_pred -------CC----hh-hhhCHHHHHHhhCC---CCCEEEEC-------CcCCCCCcEEEEEecccCCCccCccceEEEEe
Confidence 00 00 01123455554 32 45777766 29999999999999999999873 22
Q ss_pred eCCCC---CCCHHHHHHHHHHHHHHHhcC
Q psy2520 154 DEPTT---GLDSFSASKLIRMMRELTSQR 179 (290)
Q Consensus 154 DEPts---gLD~~~~~~i~~~l~~l~~~~ 179 (290)
|.|.. -+|......+.+++.+...+.
T Consensus 135 ~~~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 135 DERVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp SSCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cCCcccCcccCcccHHHHHHHHHHHHhcc
Confidence 44432 234455677777776654553
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-15 Score=136.36 Aligned_cols=146 Identities=15% Similarity=0.188 Sum_probs=79.7
Q ss_pred EEEECCCCChHHHHHHHHHc-CCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHHHHHHhcCchh
Q psy2520 16 VAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR 92 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G-~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~~ 92 (290)
+.|.||||+|||||+++|++ +..|. .|.+.++|.+... ..+..+++++|.+.+....+ + . ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~----~~~-- 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D---M----GNN-- 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC-------------C--
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h---c----CCc--
Confidence 89999999999999999999 67774 6999999987643 23456888888654321111 0 0 000
Q ss_pred hhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2520 93 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM 172 (290)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l 172 (290)
... .+.+.++.+......+.. . .||| +..+|+++|+|||++ ||+.++..+++.|
T Consensus 105 -~~~----~~~~~i~~~~~~~~~~~~--------~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~l 158 (354)
T 1sxj_E 105 -DRI----VIQELLKEVAQMEQVDFQ--------D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTM 158 (354)
T ss_dssp -CHH----HHHHHHHHHTTTTC--------------------------------CCEEEEEECTTS-SCHHHHHHHHHHH
T ss_pred -chH----HHHHHHHHHHHhcccccc--------c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHH
Confidence 000 122233332211111111 0 1566 788999999999999 9999999999999
Q ss_pred HHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 173 RELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 173 ~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
.+. . .+.++|++||++......+.+|+..
T Consensus 159 e~~-~-~~~~~Il~t~~~~~l~~~l~sR~~~ 187 (354)
T 1sxj_E 159 EKY-S-KNIRLIMVCDSMSPIIAPIKSQCLL 187 (354)
T ss_dssp HHS-T-TTEEEEEEESCSCSSCHHHHTTSEE
T ss_pred Hhh-c-CCCEEEEEeCCHHHHHHHHHhhceE
Confidence 986 3 3689999999975433345555533
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.8e-15 Score=136.98 Aligned_cols=75 Identities=29% Similarity=0.402 Sum_probs=66.3
Q ss_pred CCCCChHHHHHH------HHHHHHHhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcC
Q psy2520 127 KVVLSGGERKRL------SFATELLTD-PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 199 (290)
Q Consensus 127 ~~~LSgGqrqRv------~ia~aL~~~-p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d 199 (290)
+..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|+++ .+ +.+||++||++ . +..+||
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~-~~~vi~~th~~-~-~~~~~d 353 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV-KS-IPQMIIITHHR-E-LEDVAD 353 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC-CS-CSEEEEEESCG-G-GGGGCS
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh-cc-CCeEEEEEChH-H-HHhhCC
Confidence 356999999988 567888999 9999999999999999999999999987 43 46899999996 3 678999
Q ss_pred eEEEEe
Q psy2520 200 KIILLA 205 (290)
Q Consensus 200 ~v~~l~ 205 (290)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-16 Score=144.17 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=81.6
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEE---CCEecCcc---cc-ccEEEEccCCCCC-----CCCCH
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV---NGKPVEGK---FR-SACGFMYQHDLFS-----PSLTV 77 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i---~G~~~~~~---~~-~~ig~v~Q~~~~~-----~~lTv 77 (290)
+.+|++++|+||||||||||+|+|+ +.+|. +|+|.+ +|++++.. ++ +.+||++|.+.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 4579999999999999999999999 88884 799999 99887541 22 3689999998553 67899
Q ss_pred HHHH--HHH------HHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHH
Q psy2520 78 YEHL--YFM------ALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFAT 142 (290)
Q Consensus 78 ~e~l--~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~ 142 (290)
|++ .|. +..+.- ....+....+.++++.++|.+ ..++. +..|||.++|++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~--~~~~e~~~~v~~~l~~~~L~~~~~~~~--------~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDC--THTNEPGCAVKEAVKNGEISCERYKSY--------LKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTC--CSSSCTTCHHHHHHHTTSSCHHHHHHH--------HHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCC--CCCCCCCCHHHHHHHcCCCCHHHHHHH--------HHHHHHHHHHHHHHhc
Confidence 887 443 112110 001111245788999999986 66776 3449999999999987
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-15 Score=144.30 Aligned_cols=170 Identities=18% Similarity=0.174 Sum_probs=96.5
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
+.+++++++.|+.++|+|+|||||||||++|+|..+. +.+.+.+ .+...+|++++++. ..++++++.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~---------i~~~~ft-Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPK---------IAPYPFT-TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCE---------ECCCTTC-SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCcc---------ccCcccc-eecceeeEEEecCc--ceEEEEeccc
Confidence 5689999999999999999999999999999997431 2222221 11223444444320 0011111100
Q ss_pred H---HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 83 F---MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 83 ~---~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
+ ......... ......+++..++..+++. +.. +.+||+|++|++++|++|+..|.++++ +.
T Consensus 215 li~~a~~~~~L~~-~fl~~~era~~lL~vvDls---~~~--------~~~ls~g~~el~~la~aL~~~P~ILVl----NK 278 (416)
T 1udx_A 215 IIEGASEGKGLGL-EFLRHIARTRVLLYVLDAA---DEP--------LKTLETLRKEVGAYDPALLRRPSLVAL----NK 278 (416)
T ss_dssp CCCCGGGSCCSCH-HHHHHHTSSSEEEEEEETT---SCH--------HHHHHHHHHHHHHHCHHHHHSCEEEEE----EC
T ss_pred cccchhhhhhhhH-HHHHHHHHHHhhhEEeCCc---cCC--------HHHHHHHHHHHHHHhHHhhcCCEEEEE----EC
Confidence 0 000000000 0000001112233333443 333 344999999999999999999999999 99
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE
Q psy2520 160 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 201 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v 201 (290)
+|+... ..++.+++..++.|.+++++|-.....+.++++.+
T Consensus 279 lDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 279 VDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred CChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 999877 44455544435557777766533233355555443
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-17 Score=153.62 Aligned_cols=157 Identities=17% Similarity=0.096 Sum_probs=103.3
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCC-
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSL- 75 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~l- 75 (290)
++|+.+.+|++++|+||||||||||+++|+|++.|. +|+|.+.|.++.. ..+..++|++|++.+++..
T Consensus 47 ~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 123 (337)
T 2qm8_A 47 AVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPS 123 (337)
T ss_dssp HHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECC
T ss_pred hCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccC
Confidence 578889999999999999999999999999999884 7999999988742 2456799999998776532
Q ss_pred -----------CHHHHHHHHHH-----------------------------hcCchhhhHHH-HHHHHHHHHHHcCCCCc
Q psy2520 76 -----------TVYEHLYFMAL-----------------------------LKLDRRVKAYQ-RIALINSLLIELGLMNS 114 (290)
Q Consensus 76 -----------Tv~e~l~~~~~-----------------------------~~~~~~~~~~~-~~~~~~~~l~~~~l~~~ 114 (290)
++.|.+..... ..........+ ....+.+....+.+ +.
T Consensus 124 ~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvl-NK 202 (337)
T 2qm8_A 124 PSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAV-NK 202 (337)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEE-EC
T ss_pred cccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEE-Ec
Confidence 13333211100 00000000000 00001111111111 22
Q ss_pred cCcccCCcCCCCCCCCChHHHHHHHHHHHHHh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy2520 115 QHTRIGSSSITQKVVLSGGERKRLSFATELLT------DPALLLCDEPTTGLDSFSASKLIRMMRELT 176 (290)
Q Consensus 115 ~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~------~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 176 (290)
.|... ...+|+|++|++..+++++. .|++++ +|++|......+++.|.++.
T Consensus 203 ~Dl~~-------~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 203 ADDGD-------GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CSTTC-------CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred hhccC-------chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 23110 12389999999999999887 688876 99999999999999998873
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-15 Score=122.10 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=35.0
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE-EEEEeCCC
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT-VLCTIHQP 190 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t-ii~~tH~~ 190 (290)
.+|++|++|||++ ++...+..+++++..+. +.|++ +|++||.+
T Consensus 82 ~~~~lLilDE~~~-~~~~~~~~l~~li~~~~-~~g~~~iiits~~~ 125 (149)
T 2kjq_A 82 FEAEYLAVDQVEK-LGNEEQALLFSIFNRFR-NSGKGFLLLGSEYT 125 (149)
T ss_dssp GGCSEEEEESTTC-CCSHHHHHHHHHHHHHH-HHTCCEEEEEESSC
T ss_pred hCCCEEEEeCccc-cChHHHHHHHHHHHHHH-HcCCcEEEEECCCC
Confidence 4689999999998 66666888999999984 45777 88888864
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-16 Score=141.42 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=84.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHH----
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL---- 86 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~---- 86 (290)
.++.+++|.||+|||||||.+.|++++.+ .|. . ++.+.+|+|++.+++. ++.+|+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g~----------~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KYG----------G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HHG----------G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cCC----------C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 46889999999999999999999998875 230 1 3346666999877754 88888887521
Q ss_pred hc--C-chhhhHHHHHHHHHHHHHHcCCC--Cc--cCcccCCcCCCCCCCCChHHHHHHHHH--HHHHhCCCeEEEeCCC
Q psy2520 87 LK--L-DRRVKAYQRIALINSLLIELGLM--NS--QHTRIGSSSITQKVVLSGGERKRLSFA--TELLTDPALLLCDEPT 157 (290)
Q Consensus 87 ~~--~-~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~~v~~~~~~~~~~LSgGqrqRv~ia--~aL~~~p~llllDEPt 157 (290)
+. . +.... ...+.+.++.+.-. .. ....++.. ...+||||+||+++| +++ +|+|||+||||
T Consensus 93 ~~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p~y----~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~ 162 (290)
T 1odf_A 93 LQGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLPKY----DKSQFKGEGDRCPTGQKIKL--PVDIFILEGWF 162 (290)
T ss_dssp GSSSCSTTSBC----HHHHHHHHHHHTC------CCEEEECCE----ETTHHHHTCEECSSCEEEES--SCSEEEEEESS
T ss_pred hhhccCcchhH----HHHHHHHHHHhhccCccccCcceeeccC----ccccCCccccccccccceEc--CCCEEEEeCcc
Confidence 10 0 11111 22344556655332 00 00001100 235999999999997 555 99999999999
Q ss_pred CCCCHHH
Q psy2520 158 TGLDSFS 164 (290)
Q Consensus 158 sgLD~~~ 164 (290)
+++|+..
T Consensus 163 ~~ld~~~ 169 (290)
T 1odf_A 163 LGFNPIL 169 (290)
T ss_dssp TTCCCCC
T ss_pred ccCCccc
Confidence 9999863
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-17 Score=153.49 Aligned_cols=127 Identities=18% Similarity=0.113 Sum_probs=88.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEc---------cCCCC--
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMY---------QHDLF-- 71 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~---------Q~~~~-- 71 (290)
.+|++++|+|||||||||||++|+|+++|. +|+|.+.|.++.. .+...+++.| |++.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~ 241 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVM 241 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEE
Confidence 689999999999999999999999998874 7999999887642 1334566655 88654
Q ss_pred CCC----CCHHHHHHHHHHhcC-chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 72 SPS----LTVYEHLYFMALLKL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 72 ~~~----lTv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
++. .|+.+++.++..-+. ......... ..+.+.|..+++.... . +..|||||+|| ||++|+.
T Consensus 242 vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~-~~~i~rL~~lgl~~~~--~--------~~~LSgg~~QR--LaraL~~ 308 (418)
T 1p9r_A 242 VGEIRDLETAQIAVQASLTGHLVMSTLHTNTA-VGAVTRLRDMGIEPFL--I--------SSSLLGVLAQR--LVRTLCP 308 (418)
T ss_dssp ESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS-HHHHHHHHHHTCCHHH--H--------HHHEEEEEEEE--EEEEECT
T ss_pred EcCcCCHHHHHHHHHHHHhCCCcccccchhhH-HHHHHHHHHcCCcHHH--H--------HHHHHHHHHHH--hhhhhcC
Confidence 343 588898887642111 000000000 1122346677886543 3 34599999999 9999999
Q ss_pred CCCeEEE
Q psy2520 147 DPALLLC 153 (290)
Q Consensus 147 ~p~llll 153 (290)
+|++..-
T Consensus 309 ~p~~~~~ 315 (418)
T 1p9r_A 309 DCKEPYE 315 (418)
T ss_dssp TTCEEEE
T ss_pred CCCccCC
Confidence 9998753
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-17 Score=158.34 Aligned_cols=169 Identities=14% Similarity=0.149 Sum_probs=104.3
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe-cCccccccEEEEccCCC-------------
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP-VEGKFRSACGFMYQHDL------------- 70 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~-~~~~~~~~ig~v~Q~~~------------- 70 (290)
++++.+++|+.++|+|||||||||||++|+|+++|+ +|.|+++|.+ +...-...++++.|...
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~ 328 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRA 328 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHT
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHH
Confidence 466778999999999999999999999999999884 7999998865 22111234555554322
Q ss_pred ---------CCCCCCHHHHHHHHHHhcCc----hhhhHHHHHHHHHHHHHHcCCC-----C----ccCcccCCcCCCCCC
Q psy2520 71 ---------FSPSLTVYEHLYFMALLKLD----RRVKAYQRIALINSLLIELGLM-----N----SQHTRIGSSSITQKV 128 (290)
Q Consensus 71 ---------~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~-----~----~~~~~v~~~~~~~~~ 128 (290)
+++.++..|++.+....... ..... ..+.++++++... . ..+-.+.. ..
T Consensus 329 ~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha----~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~-----~~ 399 (511)
T 2oap_1 329 ALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHA----GDINQMVYRLESEPLKVPRSMLQFLDIALVQ-----TM 399 (511)
T ss_dssp TGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEEC----SSHHHHHHHHHSTTTCCCGGGGGGCCEEEEE-----EE
T ss_pred hhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccccc----CCHHHHHHHHHhcccccHHHHHhhccEEEEE-----EE
Confidence 22344555544433222110 00000 0122333333221 1 11100000 22
Q ss_pred CCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE--EeCCCcHHHHhhcC
Q psy2520 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC--TIHQPSSELIDMFD 199 (290)
Q Consensus 129 ~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~--~tH~~~~~~~~~~d 199 (290)
.+|+||+||++++. + | |+|||+.....+++.|.++ ...+.|+++ +||++ .++...|+
T Consensus 400 ~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~-~~~~~tii~~~~sH~l-~ei~~~~g 458 (511)
T 2oap_1 400 WVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKW-DPKEDKHIEVSMPKKL-EKMADFLG 458 (511)
T ss_dssp EESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEE-ETTTTEEEECSCCTHH-HHHHHHHT
T ss_pred EEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEE-cccCCEEEEcccHHHH-HHHHHHcC
Confidence 47999999987752 2 7 9999998888888888777 445789875 89997 46777764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-16 Score=135.46 Aligned_cols=163 Identities=17% Similarity=0.104 Sum_probs=86.9
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 89 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~ 89 (290)
.++|++++|+||||||||||+++|+|+++|. | ..+|+|++++..+.. +..+++........
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G--------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T--------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C--------------CceEEEecCCCcCCH-HHHHHhcccccCCC
Confidence 4689999999999999999999999998762 2 124455544332221 11111110000000
Q ss_pred chhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHH-HHHHhCCCeEEEeCCCCCCCHHHHHHH
Q psy2520 90 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA-TELLTDPALLLCDEPTTGLDSFSASKL 168 (290)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia-~aL~~~p~llllDEPtsgLD~~~~~~i 168 (290)
+...... .+.+.+..+...+.....+.+. ...+|+||+||++++ ++++.++.++++|||..
T Consensus 80 ~~~~~~~----~~~~~l~~l~~~~~i~~p~~d~----~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~---------- 141 (208)
T 3c8u_A 80 PETFDFE----GFQRLCHALKHQERVIYPLFDR----ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW---------- 141 (208)
T ss_dssp GGGBCHH----HHHHHHHHHHHCSCEEEEEEET----TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG----------
T ss_pred CchhhHH----HHHHHHHHHhcCCceecccCCc----cccCCCCCceEEcCCCcEEEECCceeccCCchh----------
Confidence 0111111 1122222221111111112221 234899999999998 88888888888888841
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHHH
Q psy2520 169 IRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 221 (290)
Q Consensus 169 ~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 221 (290)
..+... --.+|++.+.....+.+...|. +..|. +.+++...
T Consensus 142 -~~l~~~----~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~ 182 (208)
T 3c8u_A 142 -RDLTAI----WDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVAR 182 (208)
T ss_dssp -GGGGGT----CSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHH
T ss_pred -HHHHHh----cCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHH
Confidence 111222 1357777777543356666662 34454 45555543
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-16 Score=150.58 Aligned_cols=167 Identities=16% Similarity=0.206 Sum_probs=115.8
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcC------------CCCCCCCccEEEECCEecCc-----cccccE---EEEccC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQR------------LPDDCIIDGDIRVNGKPVEG-----KFRSAC---GFMYQH 68 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~------------~~~~~~~~G~I~i~G~~~~~-----~~~~~i---g~v~Q~ 68 (290)
.+.+|..++|+|+||||||||+|+|+|. ..| .+|.|.++|..+.. ..++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p---~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP---EEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT---TEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc---eeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 5678999999999999999999999992 334 48999998854421 112223 467777
Q ss_pred CCCCCCCCHHHHH--HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh
Q psy2520 69 DLFSPSLTVYEHL--YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 146 (290)
Q Consensus 69 ~~~~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~ 146 (290)
+.++...+..|++ .|...++.. +.++..+...+ +.. +..+||+.
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~~--------i~~v~~~~------------ 138 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DAE--------IIHVEGDV------------ 138 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TTC--------SSCCSSSS------------
T ss_pred cccccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cce--------eeeecccc------------
Confidence 7787777766655 333322210 01111111111 222 23366653
Q ss_pred CC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEE-EEeCC-eEEEEcCH
Q psy2520 147 DP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII-LLADS-RTAFIGSK 215 (290)
Q Consensus 147 ~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~-~l~~G-~i~~~g~~ 215 (290)
+| +++++|||+.++|+....+.++.+.......|.|++ +|.. ..+..+||++. +|.+| ++++.|+.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCC
Confidence 89 999999999999999999999999887223467754 9996 57889999999 99999 88877654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.40 E-value=9.1e-15 Score=133.23 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=67.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEE---CCEecCcc---c-cccEEEEccCCC-----------
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV---NGKPVEGK---F-RSACGFMYQHDL----------- 70 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i---~G~~~~~~---~-~~~ig~v~Q~~~----------- 70 (290)
.+.+|++++|+||||||||||||+|+|+.+|. +|+|.+ +|++++.. + .+.+|||+|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 45679999999999999999999999999984 799999 89887541 2 236899999874
Q ss_pred -----CCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCC-CccCcc
Q psy2520 71 -----FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTR 118 (290)
Q Consensus 71 -----~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~ 118 (290)
++|.+|+ +|+.|....+. .+...++.++++.++|. +..++.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~~~~~------~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSDCNHV------DEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTTCCSS------SCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCCCcCC------CCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5888999 98887532111 11124567899999995 566665
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-16 Score=143.63 Aligned_cols=136 Identities=15% Similarity=0.187 Sum_probs=91.7
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc----ccccEEEEccCC-CCCCCCCHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFMYQHD-LFSPSLTVYE 79 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~----~~~~ig~v~Q~~-~~~~~lTv~e 79 (290)
++++.+.+| ++|+||||||||||+++|+|...+ |.|.++|.++... ..+.++++||.. ...|.+++.|
T Consensus 38 ~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~D 110 (274)
T 2x8a_A 38 ALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFD 110 (274)
T ss_dssp HTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeee
Confidence 456778888 999999999999999999998775 7999999876432 345688888863 4556666666
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC-
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT- 158 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts- 158 (290)
++.+....+. ... .. .+....++. +..|||||+||+.|++|+.++|++| |||+.
T Consensus 111 eid~~~~~r~-----~~~----~~------~~~~~~~~~--------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r 165 (274)
T 2x8a_A 111 EVDALCPRRS-----DRE----TG------ASVRVVNQL--------LTEMDGLEARQQVFIMAATNRPDII--DPAILR 165 (274)
T ss_dssp TCTTTCC------------------------CTTHHHHH--------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHS
T ss_pred hhhhhhcccC-----CCc----ch------HHHHHHHHH--------HHhhhcccccCCEEEEeecCChhhC--CHhhcC
Confidence 6654321110 000 00 011222333 2339999999999999999999985 99864
Q ss_pred -----------CCCHHHHHHHHHHH
Q psy2520 159 -----------GLDSFSASKLIRMM 172 (290)
Q Consensus 159 -----------gLD~~~~~~i~~~l 172 (290)
--|...+.+|++.+
T Consensus 166 ~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 166 PGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp TTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cccCCeEEEeCCcCHHHHHHHHHHH
Confidence 23566666665543
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.8e-15 Score=134.05 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=60.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCCccEEEE---CCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLP--DDCIIDGDIRV---NGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~--~~~~~~G~I~i---~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
.+|+++||+||||||||||+++|+|++. |+ +|+|.+ +|.......++.+|++ |...+++.+|+.+++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~ 153 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVS 153 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHH
Confidence 7899999999999999999999999887 74 799999 8876543344568888 8777778899999998865
Q ss_pred Hh
Q psy2520 86 LL 87 (290)
Q Consensus 86 ~~ 87 (290)
.+
T Consensus 154 ~l 155 (308)
T 1sq5_A 154 DL 155 (308)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-14 Score=130.06 Aligned_cols=118 Identities=20% Similarity=0.221 Sum_probs=66.5
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEE---CCEecCc--c-ccccEEEEccCCCCCC----CCCH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV---NGKPVEG--K-FRSACGFMYQHDLFSP----SLTV 77 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i---~G~~~~~--~-~~~~ig~v~Q~~~~~~----~lTv 77 (290)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|+.++. . ++..+||++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 456789999999999999999999999999884 799999 8887654 1 2222799999987655 6889
Q ss_pred HHHHH--HHH-H-h----cCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHH
Q psy2520 78 YEHLY--FMA-L-L----KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR 137 (290)
Q Consensus 78 ~e~l~--~~~-~-~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqR 137 (290)
|++. |.. . . +........+....+.++++.++|.+...... ..|+.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y--------~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY--------VEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH--------HHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH--------HHHHHHHhhc
Confidence 8883 321 0 1 00000000111234678999999976444332 2377787763
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-13 Score=117.71 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=50.5
Q ss_pred HHHHHHHH--hCCCeEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHH-------HHhhcCeEEEEeC
Q psy2520 138 LSFATELL--TDPALLLCDEPTTGL--DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE-------LIDMFDKIILLAD 206 (290)
Q Consensus 138 v~ia~aL~--~~p~llllDEPtsgL--D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~-------~~~~~d~v~~l~~ 206 (290)
...++.++ .+|+++++|+|++.+ |+....+++..|.+++++.|.|||+++|..... +.+++|.++.|+.
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344443 689999999999988 665566666777776567799999999986421 4578999999964
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-15 Score=137.02 Aligned_cols=151 Identities=19% Similarity=0.166 Sum_probs=95.2
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC----CCCCCCccEEEECCEecCc---c-ccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL----PDDCIIDGDIRVNGKPVEG---K-FRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~----~~~~~~~G~I~i~G~~~~~---~-~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
+.++|+||||+|||||+++|+|.+ .+ ++|.+..++.++.. . .+..|+|+.|.+.+.+ ++.|++....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~---~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~ 126 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHV---TSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAI 126 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEE---EETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEE---EechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHH
Confidence 789999999999999999999987 33 36777766655432 1 2457999999877765 7888885543
Q ss_pred HhcCchh-hhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHH
Q psy2520 86 LLKLDRR-VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 164 (290)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~ 164 (290)
......- .......+.+...+..+++.. +.+. +..||+|++||+.++ .+||+.+
T Consensus 127 ~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~--------~~~Ls~~l~sR~~l~----------------~~Ld~~~ 181 (334)
T 1in4_A 127 EDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR--------SGLLSSPLRSRFGII----------------LELDFYT 181 (334)
T ss_dssp HTSCCCC---------------CCCEEEE-EESC--------GGGSCHHHHTTCSEE----------------EECCCCC
T ss_pred HhcccceeeccCcccccccccCCCeEEEE-ecCC--------cccCCHHHHHhcCce----------------eeCCCCC
Confidence 3221000 001111122334444455533 4444 345999999998655 7888888
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCe
Q psy2520 165 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 200 (290)
Q Consensus 165 ~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~ 200 (290)
..++.++|++.++..+ ++|+. +.+..++++
T Consensus 182 ~~~l~~iL~~~~~~~~-----~~~~~-~~~~~ia~~ 211 (334)
T 1in4_A 182 VKELKEIIKRAASLMD-----VEIED-AAAEMIAKR 211 (334)
T ss_dssp HHHHHHHHHHHHHHTT-----CCBCH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC-----CCcCH-HHHHHHHHh
Confidence 9999999998865444 35664 345556654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-16 Score=135.07 Aligned_cols=57 Identities=14% Similarity=0.270 Sum_probs=43.2
Q ss_pred HHH-HHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 140 FAT-ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 140 ia~-aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
.++ +++.+|++++|||||+++|..+...|.+.|.....+ +.+.|.+ ..||+++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhcc-----CCceEEEECCC
Confidence 345 677888888999999999999999999999887433 2334521 56899988864
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-12 Score=116.60 Aligned_cols=112 Identities=14% Similarity=0.230 Sum_probs=78.8
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 85 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~ 85 (290)
+++...+|++++|+|||||||||++..|++.+.+. .|+|.+.+.+... . ...+.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r-----~-------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFR-----A-------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTC-----H-------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcccccc-----H-------------HHHHH-----
Confidence 45556789999999999999999999999998773 5788876655311 0 00111
Q ss_pred HhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHH---HHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 86 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL---SFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv---~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+..+.+.+++.. ...+|+|+.+++ +|++++..+|+++|+|+|.. .
T Consensus 151 ----------------L~~~~~~~gl~~-------------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~ 198 (306)
T 1vma_A 151 ----------------LKIWGERVGATV-------------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---L 198 (306)
T ss_dssp ----------------HHHHHHHHTCEE-------------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---C
T ss_pred ----------------HHHHHHHcCCcE-------------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---h
Confidence 123444555532 123789999999 89999999999999999974 3
Q ss_pred HHHHHHHHHHHHH
Q psy2520 163 FSASKLIRMMREL 175 (290)
Q Consensus 163 ~~~~~i~~~l~~l 175 (290)
.....+++.|+++
T Consensus 199 ~~~~~l~~eL~~l 211 (306)
T 1vma_A 199 HTKKNLMEELRKV 211 (306)
T ss_dssp SCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 3445555555554
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=111.44 Aligned_cols=159 Identities=13% Similarity=0.163 Sum_probs=98.2
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcCc
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD 90 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~ 90 (290)
.+|++++|+|||||||||++..|++.+.+. +| +++.++.++.. ..++.|++....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G--------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH--------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC--------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC--------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 479999999999999999999999998752 46 23666666542 234555554322
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2520 91 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR 170 (290)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~ 170 (290)
+..++.-.. ..+. ..-+.+|++ +.+|+++|+| |+|+|+.....+.+
T Consensus 158 ----------------~~~gl~~~~-------------~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~e 203 (296)
T 2px0_A 158 ----------------ELLQAPLEV-------------CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDE 203 (296)
T ss_dssp ----------------TTTTCCCCB-------------CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHH
T ss_pred ----------------HhcCCCeEe-------------cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHH
Confidence 112322110 0222 333555554 5999999999 99999877665555
Q ss_pred HHHHHH--hcCCcEEEE-EeCCCcHHHHhhcCeEEEEeCCeEEEEc---C--HHHHHHHHHHCCCCC
Q psy2520 171 MMRELT--SQRKKTVLC-TIHQPSSELIDMFDKIILLADSRTAFIG---S--KDAALAFLESQGYPC 229 (290)
Q Consensus 171 ~l~~l~--~~~g~tii~-~tH~~~~~~~~~~d~v~~l~~G~i~~~g---~--~~~~~~~~~~~g~~~ 229 (290)
+.+-+. ...+.++++ ++|.. .++.++++++..+..+.++..- + ...++......|.|.
T Consensus 204 l~~~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVltk~D~~~~~g~~~~~~~~~~~pi 269 (296)
T 2px0_A 204 LKETIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIGV 269 (296)
T ss_dssp HHHHSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEECTTTCSCCHHHHHHHHTCSCCC
T ss_pred HHHHHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEeCCCcccchhHHHHHHHHHCcCE
Confidence 444331 112334444 48875 4688888887777777777532 1 124555556666554
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-11 Score=114.34 Aligned_cols=173 Identities=9% Similarity=0.115 Sum_probs=103.8
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCcc-EEEECCEecCc-ccccc-EEEEccCCCCCCCCCHHHHHHHH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG-DIRVNGKPVEG-KFRSA-CGFMYQHDLFSPSLTVYEHLYFM 84 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G-~I~i~G~~~~~-~~~~~-ig~v~Q~~~~~~~lTv~e~l~~~ 84 (290)
+-+.+|+++.|.|++|+|||||+..+++...+. .| .|.|.+.+... .+..+ ++.... ... +.+
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~~l--- 263 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-QNL--- 263 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-HHH---
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-HHH---
Confidence 447899999999999999999999988765431 23 34433222111 00000 000000 000 000
Q ss_pred HHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHH--hCCCeEEEeCCCCCCC-
Q psy2520 85 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL--TDPALLLCDEPTTGLD- 161 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~--~~p~llllDEPtsgLD- 161 (290)
+.. .... ....++.+.+..++..+..-.. ...+|.++.+ +.++.++ .+|+++++|+++...+
T Consensus 264 ---~~g-~l~~-~~~~~~~~a~~~l~~~~l~i~d--------~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 264 ---RTG-KLTP-EDWGKLTMAMGSLSNAGIYIDD--------TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp ---HTS-CCCH-HHHHHHHHHHHHHHSSCEEEEC--------CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred ---hcC-CCCH-HHHHHHHHHHHHHhcCCEEEEC--------CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 000 0111 1122344455555443333222 2348999886 5667776 6899999999998774
Q ss_pred -------HHHHHHHHHHHHHHHhcCCcEEEEEeC---------C--Cc-------HHHHhhcCeEEEEeCCeE
Q psy2520 162 -------SFSASKLIRMMRELTSQRKKTVLCTIH---------Q--PS-------SELIDMFDKIILLADSRT 209 (290)
Q Consensus 162 -------~~~~~~i~~~l~~l~~~~g~tii~~tH---------~--~~-------~~~~~~~d~v~~l~~G~i 209 (290)
......+.+.|+.++++.|.+||+++| + |. ..+...||.|++|+.++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 334467888889887777999999999 2 32 036778999999987764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.4e-11 Score=108.04 Aligned_cols=128 Identities=18% Similarity=0.102 Sum_probs=87.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.++++. +|++++|+|+||+||||++..|++.+.+. .|+|.+.+.++.... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~~-----------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRPA-----------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCHH-----------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccHh-----------------HH-HHH--
Confidence 367777 99999999999999999999999998763 588888765542100 00 000
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC-CCCCCH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP-TTGLDS 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP-tsgLD~ 162 (290)
..+.+..++.-..... ..+-.+.+|.+|+.+...+++++|+||| +.++|.
T Consensus 146 -------------------~~~~~~~~l~~~~~~~----------~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~ 196 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEVMD----------GESPESIRRRVEEKARLEARDLILVDTAGRLQIDE 196 (295)
T ss_dssp -------------------HHHHHHHTCCEEECCT----------TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCH
T ss_pred -------------------HHhcccCCeEEEEcCC----------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccH
Confidence 0112334543221100 1234456789999998899999999999 999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEe
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTI 187 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~t 187 (290)
.....+.++.+.+ . ...+++++.
T Consensus 197 ~~~~~l~~~~~~~-~-~~~~~lv~~ 219 (295)
T 1ls1_A 197 PLMGELARLKEVL-G-PDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHHHH-C-CSEEEEEEE
T ss_pred HHHHHHHHHhhhc-C-CCEEEEEEe
Confidence 9888888888776 3 344555443
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-15 Score=130.78 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=23.3
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHH-cCCCC
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALS-QRLPD 39 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~-G~~~~ 39 (290)
..++||++++|++++|+||||||||||+++|+ |++++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 46899999999999999999999999999999 99754
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-12 Score=108.69 Aligned_cols=144 Identities=19% Similarity=0.154 Sum_probs=76.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCC--C------CccEEEECCEecCc------cccccEEEEccCCC-CCCCCCHHH
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPDDC--I------IDGDIRVNGKPVEG------KFRSACGFMYQHDL-FSPSLTVYE 79 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~~~--~------~~G~I~i~G~~~~~------~~~~~ig~v~Q~~~-~~~~lTv~e 79 (290)
.++|+|+||||||||++.++|...+.. . .+|+|.++|+++.. ...+..++++|... ....++|++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 689999999999999999999875410 0 36899999986531 11122222222100 000011111
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 159 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsg 159 (290)
..... ..........++ ....-....--.+++ ..+|..-..+.+.+|++|+.+|+++++| ||+
T Consensus 111 ~~~~~---------s~~~~~~~~~~~-~~~~~~~~~i~~v~n-----K~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IAKHL---------TYENVERWLKEL-RDHADSNIVIMLVGN-----KSDLRHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TTCHH---------HHHTHHHHHHHH-HHHSCTTCEEEEEEE-----CGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred CcCHH---------HHHHHHHHHHHH-HHhcCCCCcEEEEEE-----CcccccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 10000 000000000111 111000000001111 1123322234578899999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2520 160 LDSFSASKLIRMMREL 175 (290)
Q Consensus 160 LD~~~~~~i~~~l~~l 175 (290)
+|..+..++++.|.+.
T Consensus 174 ld~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 174 LDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988753
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.9e-13 Score=112.30 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=48.3
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
|+.+.+|++++|+||||||||||+++|+|+++ .+.+.+..+.. ..+..++|+||++.+++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 57788999999999999999999999999863 35666655543 2345689999987665555554443
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-14 Score=130.35 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=79.2
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCC-CCCCCCCHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHD-LFSPSLTVYE 79 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~-~~~~~lTv~e 79 (290)
++++.+.+| ++|+||||||||||+++|++... .|.|.+++.++.. ...+.++++||.. ...+.+++.|
T Consensus 67 ~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iD 139 (278)
T 1iy2_A 67 EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID 139 (278)
T ss_dssp HTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEE
T ss_pred HcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehh
Confidence 456777888 89999999999999999999875 4899998876532 1234577888874 3566778888
Q ss_pred HHHHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCe
Q psy2520 80 HLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 150 (290)
Q Consensus 80 ~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~l 150 (290)
++......+... ..........+..++. .|||||+||+.+++++..+|++
T Consensus 140 eid~l~~~~~~~~~~~~~~~~~~~~~ll~---------------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 140 EIDAVGRKRGSGVGGGNDEREQTLNQLLV---------------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp THHHHHCC--------CHHHHHHHHHHHH---------------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred hhHhhhcccccccCCcchHHHHHHHHHHH---------------------HHhCCCCCCCEEEEEecCCchh
Confidence 885433211100 0000111222333332 2899999999999999999976
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.5e-12 Score=124.85 Aligned_cols=175 Identities=15% Similarity=0.093 Sum_probs=102.0
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHc--CCCCCCCCccEEEECCEecCc-cccccEEEEccCCCCCCCC--CHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQ--RLPDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSL--TVYE 79 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G--~~~~~~~~~G~I~i~G~~~~~-~~~~~ig~v~Q~~~~~~~l--Tv~e 79 (290)
.+++.+.++..++|.|++||||||++++|.. +..+ ..|++.+.+.+... .+ +....+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~---~p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA---QPEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC---CTTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC---CCceEEEEEECCchhhh--------hhhccCCcccceeec
Confidence 4788889999999999999999999998875 3333 24777776666532 11 110011111 1222
Q ss_pred HHHHHHH-hcCchhhhHHHHHHHHHHHHHHcCCCCccCc--ccCCcCCCCCCCCChHHHHHH----------HHHHHHHh
Q psy2520 80 HLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHT--RIGSSSITQKVVLSGGERKRL----------SFATELLT 146 (290)
Q Consensus 80 ~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~v~~~~~~~~~~LSgGqrqRv----------~ia~aL~~ 146 (290)
+...+.. +.. ...+..++ .+++...|+.+.... .+. ..+|+||+|+. .+++++..
T Consensus 228 d~~~a~~~L~~----~~~EmerR-~~ll~~~Gv~~i~~yn~~~~-------~~~s~G~~~~~~~~~pg~~~~~~a~~l~~ 295 (512)
T 2ius_A 228 DMKDAANALRW----CVNEMERR-YKLMSALGVRNLAGYNEKIA-------EADRMMRPIPDPYWKPGDSMDAQHPVLKK 295 (512)
T ss_dssp SHHHHHHHHHH----HHHHHHHH-HHHHHHTTCSSHHHHHHHHH-------HHHHTTCCCBCTTC---------CCBCCC
T ss_pred CHHHHHHHHHH----HHHHHHHH-HHHHHHcCCccHHHHHHHHH-------HHhhcCCcccccccccccchhcccccccc
Confidence 2222111 110 01111122 367888888765332 111 13788887752 35566677
Q ss_pred CCC-eEEEeCCCCCCCHHHHHHHHHHHHHHH---hcCCcEEEEEeCCCcH------HHHhhcCeEEE
Q psy2520 147 DPA-LLLCDEPTTGLDSFSASKLIRMMRELT---SQRKKTVLCTIHQPSS------ELIDMFDKIIL 203 (290)
Q Consensus 147 ~p~-llllDEPtsgLD~~~~~~i~~~l~~l~---~~~g~tii~~tH~~~~------~~~~~~d~v~~ 203 (290)
.|. ++++||+++-++.. ...+.+.|.+++ +..|.++|++||++.. ....+.+||.+
T Consensus 296 lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred CCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 898 89999999988743 234455555442 3348899999999851 12345566665
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-14 Score=127.72 Aligned_cols=123 Identities=16% Similarity=0.200 Sum_probs=81.1
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCC-CCCCCCCHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHD-LFSPSLTVYE 79 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~-~~~~~lTv~e 79 (290)
++++.+.+| ++|+||||||||||+++|++... .|.|.++|.++.. ...+.++++||.. ...+.+++.|
T Consensus 43 ~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~D 115 (254)
T 1ixz_A 43 EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID 115 (254)
T ss_dssp HTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred HcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEeh
Confidence 456777888 89999999999999999999875 4899998876532 1234577888863 3556677778
Q ss_pred HHHHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 80 HLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 80 ~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
++......+... ..........+.+++. .|||||+||+.+++++..+|++ +|++.
T Consensus 116 eid~l~~~~~~~~~~~~~~~~~~~~~ll~---------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 116 EIDAVGRKRGSGVGGGNDEREQTLNQLLV---------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp THHHHHC---------CHHHHHHHHHHHH---------------------HHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred hhhhhhcccCccccccchHHHHHHHHHHH---------------------HHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 874432211100 0001111222333332 2899999999999999999987 56543
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-10 Score=108.68 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH---HhcCCcEEEEEeCCCcH-----
Q psy2520 136 KRLSFATELLTD--PALLLCDEPTTGL----------DS---FSASKLIRMMREL---TSQRKKTVLCTIHQPSS----- 192 (290)
Q Consensus 136 qRv~ia~aL~~~--p~llllDEPtsgL----------D~---~~~~~i~~~l~~l---~~~~g~tii~~tH~~~~----- 192 (290)
+-+.++++++.. |+++++|||++.+ |+ ...+.+.+.++++ +++.|.|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 446678888755 9999999999988 33 1222334444444 35668999999996421
Q ss_pred ----------HHHhhcCeEEEEeCCeEEEEc
Q psy2520 193 ----------ELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 193 ----------~~~~~~d~v~~l~~G~i~~~g 213 (290)
.+..+||.++.+..++++..|
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 145789999988876654443
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-11 Score=118.38 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=44.7
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE 55 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~ 55 (290)
.++||++++ ++++|+|||||||||||++|+|+++|+ +|+|.++|+++.
T Consensus 21 ~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~ 68 (483)
T 3euj_A 21 FARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSC
T ss_pred cceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEcc
Confidence 479999999 999999999999999999999999995 799999998774
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-11 Score=108.55 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=41.8
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc------------cccccEEEEccC
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG------------KFRSACGFMYQH 68 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~------------~~~~~ig~v~Q~ 68 (290)
++++.+ ++++|+|||||||||||++|+|++.|+ +|+|.++|.++.. ..+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566666 799999999999999999999999985 7999999988721 135679999984
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-12 Score=125.87 Aligned_cols=153 Identities=20% Similarity=0.125 Sum_probs=93.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCC--------------
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL-------------- 70 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~-------------- 70 (290)
++++.+.+|+.++|+||||||||||+++|++++++. .-|.+.+++.+... ....++++|+...
T Consensus 52 ~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~-~~p~i~~~p~g~~~~~~e~~~~~~~~~ 128 (604)
T 3k1j_A 52 VIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDE-NMPRIKTVPACQGRRIVEKYREKAKSQ 128 (604)
T ss_dssp HHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCT-TSCEEEEEETTHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccc-cCCcEEEEecchHHHHHHHHHHhhccc
Confidence 355677899999999999999999999999999874 24888888876542 3456888887420
Q ss_pred --------CCCCCCHHHHHHHHHHhcCchh-hhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHH
Q psy2520 71 --------FSPSLTVYEHLYFMALLKLDRR-VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA 141 (290)
Q Consensus 71 --------~~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia 141 (290)
.+..+++.+|+........... ... . ....-+.+|..+..... ...+|+|++|++..+
T Consensus 129 ~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~--~---~~~~~~L~G~~~~~~~~--------~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 129 ESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA--T---GAHAGALLGDVRHDPFQ--------SGGLGTPAHERVEPG 195 (604)
T ss_dssp TCC-----------CCCEEEECCTTCSSCCEEEC--T---TCCHHHHHCEECCCCC------------CCCCGGGGEECC
T ss_pred hhhhhhcccccccccccceeeccccCCCCCEEEc--C---CCCHHhcCceEEechhh--------cCCccccccccccCc
Confidence 1111111111110000000000 000 0 00011122221111111 245999999999999
Q ss_pred HHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q psy2520 142 TELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 174 (290)
Q Consensus 142 ~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 174 (290)
+....++.+|++||... |++..+..+++.|.+
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 899999999888875
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.8e-10 Score=103.28 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=45.3
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEE-EECCEecCc-cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI-RVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I-~i~G~~~~~-~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
=+.+|+++.|.||||||||||+..++....+. .|.| +++++.... .+.+++|+.+|+..+....++.+.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l 128 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQAL 128 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHH
Confidence 37899999999999999999999999876542 3554 666554322 2234456555554333334554433
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.2e-10 Score=95.83 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2520 138 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175 (290)
Q Consensus 138 v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 175 (290)
...|++|+.+|.++++| ||++|.....++++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999999999888764
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.85 E-value=6.5e-09 Score=97.00 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=85.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCC--------CCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHH-
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPDDC--------IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA- 85 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~~~--------~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~- 85 (290)
.++|+|++|||||||++.|+|...+.. .++|.|.++|.++. +....|++.+.+. ..|.. .....
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp~----~lve~-f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIPP----QIVDA-FFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCCG----GGHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCCH----HHHHH-HHHHHH
Confidence 389999999999999999999765210 24689999987642 2223555544221 11211 11000
Q ss_pred Hhc---------Cchhhh--HHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHH----HHH-HhCCC
Q psy2520 86 LLK---------LDRRVK--AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA----TEL-LTDPA 149 (290)
Q Consensus 86 ~~~---------~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia----~aL-~~~p~ 149 (290)
... ...... .......+.++++.+++.+..--.+.+. +..+|+|+++|+.++ +++ ..+|+
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK----~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK----IDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC----GGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC----CCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 010 000111 2223344567788877654431111111 234788889988887 444 33344
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy2520 150 LLLCDEPTTGLDSFSASKLIRMMRELTS 177 (290)
Q Consensus 150 llllDEPtsgLD~~~~~~i~~~l~~l~~ 177 (290)
+ +|+|++|..+...+++.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988643
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.4e-11 Score=99.78 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=40.1
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc---ccccEEEEccCC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK---FRSACGFMYQHD 69 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~---~~~~ig~v~Q~~ 69 (290)
..++|++++|+||||||||||+++|++.+ |.+.++|.++... .+..+|+++|+.
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDE 81 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCc
Confidence 45689999999999999999999999864 7888988776431 122467777753
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.71 E-value=6.1e-09 Score=86.69 Aligned_cols=35 Identities=31% Similarity=0.365 Sum_probs=32.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.++++.+.+| +++|+||||||||||+++|.+++.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5789999999 9999999999999999999998766
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.2e-09 Score=89.08 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=27.7
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++.+|++++|+||||||||||+++|++++.|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999866
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-08 Score=92.50 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=78.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
-+.+|+++.|.|++|+|||||+..++...... .+. +.|+.= .++..+...-..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~---------------Vl~fSl------Ems~~ql~~Rll--- 94 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALND---DRG---------------VAVFSL------EMSAEQLALRAL--- 94 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCE---------------EEEEES------SSCHHHHHHHHH---
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCe---------------EEEEeC------CCCHHHHHHHHH---
Confidence 47899999999999999999988777543211 122 334321 234433222110
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHH
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL 168 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 168 (290)
.....+.+..... ..||.++++|+..|...+.+++++|.|+|... ..++
T Consensus 95 ---------------s~~~~v~~~~l~~-----------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i 143 (338)
T 4a1f_A 95 ---------------SDLTSINMHDLES-----------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQI 143 (338)
T ss_dssp ---------------HHHHCCCHHHHHH-----------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHH
T ss_pred ---------------HHhhCCCHHHHhc-----------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHH
Confidence 0011111111111 12999999999999999999999999998654 3466
Q ss_pred HHHHHHHHhcC-CcEEEEEeC
Q psy2520 169 IRMMRELTSQR-KKTVLCTIH 188 (290)
Q Consensus 169 ~~~l~~l~~~~-g~tii~~tH 188 (290)
...++++.++. |..+|++-|
T Consensus 144 ~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 144 RLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEec
Confidence 67777775555 788888865
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.8e-09 Score=95.50 Aligned_cols=57 Identities=21% Similarity=0.238 Sum_probs=47.8
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHH---cCCCCCCCCccEEE--------ECCEecCc-----cccccEEEEccCC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALS---QRLPDDCIIDGDIR--------VNGKPVEG-----KFRSACGFMYQHD 69 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~---G~~~~~~~~~G~I~--------i~G~~~~~-----~~~~~ig~v~Q~~ 69 (290)
..+|++++|+|||||||||++++|+ |+..+ .+|.|+ .+|.++.. .+++.+++++|.+
T Consensus 24 ~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 24 TAIAPVITVDGPSGAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 3679999999999999999999999 98777 479998 89988743 3567799999753
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-08 Score=102.01 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=58.5
Q ss_pred CCCChHHHHHHHHHHHHHhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEE-eCCCcHHHHhhcCeEE
Q psy2520 128 VVLSGGERKRLSFATELLTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCT-IHQPSSELIDMFDKII 202 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~tii~~-tH~~~~~~~~~~d~v~ 202 (290)
.-+|.|+.+|..++.+++.+++++|+|||.. +||......+++.+... .....+|+++ ||++ ..+.++++...
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~-~~l~~~~~~~~ 263 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDA-EKFQRYFNDAP 263 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCC-HHHHHHTTSCC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHh-CCCceEEEEeccccH-HHHHHHhcCCC
Confidence 4489999999999999999999999999996 99988877777777665 3345677774 9986 46777877433
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-09 Score=91.68 Aligned_cols=43 Identities=37% Similarity=0.558 Sum_probs=36.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEE--EECCEecCc
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI--RVNGKPVEG 56 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I--~i~G~~~~~ 56 (290)
.++|++++|+||||||||||+++|++.+.. .|.+ +++|.++..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNVRH 66 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchhhh
Confidence 378999999999999999999999998763 4877 888876543
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.2e-11 Score=114.11 Aligned_cols=124 Identities=17% Similarity=0.211 Sum_probs=79.7
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc----ccccEEEEccCCC-CCCCCCHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK----FRSACGFMYQHDL-FSPSLTVYE 79 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~----~~~~ig~v~Q~~~-~~~~lTv~e 79 (290)
++++.+.+| +.|+||||+|||||+++|++... .+-|.++|.++... ..+.+..+||... ..|.+.+.|
T Consensus 58 ~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ID 130 (499)
T 2dhr_A 58 EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID 130 (499)
T ss_dssp TTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEE
T ss_pred hccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEe
Confidence 456777788 89999999999999999999864 48899998776431 2234667777642 345555666
Q ss_pred HHHHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
++......+... .....+....+..++.. ||||++|+..|+++..++|++ |||+..
T Consensus 131 EId~l~~~r~~~~~~~~~e~~~~l~~LL~~---------------------Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 131 EIDAVGRKRGSGVGGGNDEREQTLNQLLVE---------------------MDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp CGGGTCCCSSSSTTTSSHHHHHHHHHHHHH---------------------GGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred hHHHHHHhhccCcCCCcHHHHHHHHHHHHH---------------------hcccccCccEEEEEecCChhh--cCcccc
Confidence 653322111100 00011222333444432 788888888888888888887 788765
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.59 E-value=6.5e-08 Score=93.24 Aligned_cols=59 Identities=24% Similarity=0.350 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEeCCC----------CCCCHHHHHHHHHHHHHHH---hcCCcEEEEEeCCC
Q psy2520 132 GGERKRLSFATELLTDPALLLCDEPT----------TGLDSFSASKLIRMMRELT---SQRKKTVLCTIHQP 190 (290)
Q Consensus 132 gGqrqRv~ia~aL~~~p~llllDEPt----------sgLD~~~~~~i~~~l~~l~---~~~g~tii~~tH~~ 190 (290)
+++++|..+++|....|.+|++||+. .|.|+.....+.++|..+. ...+..||.+||++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 56778888999999999999999993 4667666666666666552 23477899999986
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-08 Score=85.68 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=30.2
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEE
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRV 49 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i 49 (290)
.+|++++|+||||||||||+++|++.+++. ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 379999999999999999999999987642 2455544
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.56 E-value=9.6e-09 Score=94.22 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=58.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cc-----cccEEEE-ccCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KF-----RSACGFM-YQHD 69 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~-----~~~ig~v-~Q~~ 69 (290)
.+++|.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.++.. .+ +..++++ +|..
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 4788889999999999999999999999999998773 6899998877642 12 5678999 6764
Q ss_pred CCCCCCCHHHHHH
Q psy2520 70 LFSPSLTVYEHLY 82 (290)
Q Consensus 70 ~~~~~lTv~e~l~ 82 (290)
...|..++++++.
T Consensus 173 ~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 173 NADPASVVFDAIK 185 (320)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4444334444443
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.6e-08 Score=91.36 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=48.2
Q ss_pred CCCChHHHHHHHHHHHHHhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe--CCCc
Q psy2520 128 VVLSGGERKRLSFATELLTDPALLLCD-EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI--HQPS 191 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL~~~p~llllD-EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~t--H~~~ 191 (290)
..+|+|++|++. +.+...++-++++| +|+.++|......++..+... .. +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~-~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE-FK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHH-TT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHh-cC-CCCEEEEEECcccC
Confidence 348999998876 55555777889999 999999999988888888776 22 67888888 7753
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-08 Score=86.84 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHH--HhhcCeEEEEeC
Q psy2520 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL--IDMFDKIILLAD 206 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~--~~~~d~v~~l~~ 206 (290)
.+.|+.+|..++..+..+|..+.++ .+.++|..+..+.+.+... .+.++|+.+|.+. +. ...||.+++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~-e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLI-ENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTT-TTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhh-hcCcHhhCCEEEEEEC
Confidence 4678889999998888887654333 3455666666665555432 2457888888763 33 567898888853
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=8.3e-08 Score=83.34 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=34.5
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~ 54 (290)
..++|++++|.|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 4578999999999999999999999997 28899988775
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5.3e-08 Score=97.58 Aligned_cols=131 Identities=14% Similarity=0.037 Sum_probs=75.6
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
|+.+++|..++|+|++|||||||++.|++...+. ...|+| .+|..+.. ..++.+++.+|...++.. ++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~--- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV--- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE---
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE---
Confidence 4567899999999999999999999999765431 136877 56665533 123456666554332211 1000
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
+..|+. |. ..++ .......-..++.++++| |+.|+++
T Consensus 77 ------------------------------nliDTp-G~------~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~ 113 (665)
T 2dy1_A 77 ------------------------------FLLDAP-GY------GDFV-----GEIRGALEAADAALVAVS-AEAGVQV 113 (665)
T ss_dssp ------------------------------EEEECC-CS------GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCH
T ss_pred ------------------------------EEEeCC-Cc------cchH-----HHHHHHHhhcCcEEEEEc-CCcccch
Confidence 011111 00 0011 111222235678899999 9999998
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
.+.. +++.++ +.+.++|++.|.++
T Consensus 114 qt~~-~~~~~~----~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 114 GTER-AWTVAE----RLGLPRMVVVTKLD 137 (665)
T ss_dssp HHHH-HHHHHH----HTTCCEEEEEECGG
T ss_pred hHHH-HHHHHH----HccCCEEEEecCCc
Confidence 8763 333332 34778888888864
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-07 Score=79.37 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=24.7
Q ss_pred CccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 2 TELELTGAALSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 2 ~~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
...||||.+.+|++++|+||+||||||+.+.|++.+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 357999999999999999999999999999999764
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.35 E-value=9.2e-07 Score=81.43 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=34.7
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCcEEEEEeCCC
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTS--QRKKTVLCTIHQP 190 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~--~~g~tii~~tH~~ 190 (290)
.+|.+|++||+... |+.....+...+..+.. ..+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888876632 1478999999986
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.6e-07 Score=78.96 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=27.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999999876
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.4e-06 Score=78.74 Aligned_cols=138 Identities=13% Similarity=0.137 Sum_probs=77.5
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcC--CCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQR--LPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 86 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~--~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~ 86 (290)
-+++|+++.|.||+|||||||+..++.. .++. .| |. ...+.|+.-+..+ ....-..+...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~---~g-----g~------~~~vlyi~~E~~~----~~~~l~~~~~~ 179 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA---GG-----YP------GGKIIFIDTENTF----RPDRLRDIADR 179 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT---TT-----BC------CCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc---cC-----CC------CCeEEEEECCCCC----CHHHHHHHHHH
Confidence 4789999999999999999999988864 2221 01 00 1224454433321 12221112111
Q ss_pred hcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHH-HHHHHHHHHHH----hCCCeEEEeCCCCCCC
Q psy2520 87 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE-RKRLSFATELL----TDPALLLCDEPTTGLD 161 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGq-rqRv~ia~aL~----~~p~llllDEPtsgLD 161 (290)
+.. . ..++++.+.+. +. .++.+ .+.+..++.++ .+++++++|+.++-..
T Consensus 180 ~g~----~-------~~~~l~~l~~~----~~-----------~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 180 FNV----D-------HDAVLDNVLYA----RA-----------YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp TTC----C-------HHHHHHTEEEE----EC-----------CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred cCC----C-------HHHHHhceeEe----ec-----------CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 111 0 01223322110 11 23332 34555566666 5799999999998664
Q ss_pred HH------------HHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 162 SF------------SASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 162 ~~------------~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
.. ...+++..|+.++++.|.+||++.|-.
T Consensus 234 ~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 234 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 32 135666777777677789999998864
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-07 Score=84.92 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHHHH--hCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhcCCc--EEEEEeCCCcHHHHhhcCeEE
Q psy2520 130 LSGGERKRLSFATELL--TDPALLLCDEPTTGLDSFS-ASKLIRMMRELTSQRKK--TVLCTIHQPSSELIDMFDKII 202 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~--~~p~llllDEPtsgLD~~~-~~~i~~~l~~l~~~~g~--tii~~tH~~~~~~~~~~d~v~ 202 (290)
+|.|++ .+++.+. ..|.++++ +.+|... +..+.+.+.+++...|. .+.+++|+- ..+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 888886 4566666 78999998 7899877 67788888888544443 566667764 34566666544
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=3.8e-06 Score=77.67 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEeC
Q psy2520 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK-KTVLCTIH 188 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g-~tii~~tH 188 (290)
.++.++++..+++..+.+|+++|+.-..+..|... ...+.+++.+ ...| .+|++++.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~-~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREV-DPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHS-CTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHh-cccCCCEEEEEeC
Confidence 56788999999999999999888874444455443 4556677776 3334 57777765
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=5.5e-07 Score=85.85 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=46.6
Q ss_pred hCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE-EeCCeEEEEcCH
Q psy2520 146 TDPALLLCDEPTTGLDS-FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL-LADSRTAFIGSK 215 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~-~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~-l~~G~i~~~g~~ 215 (290)
.+|++|++||+..-.+. ..+..++..+..+ .+.|..||++||++..++..+.+++.- +..|.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l-~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNEL-HDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHH-HTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHH-HHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 48999999999876654 6788899999988 566889999999853322112222222 345666555544
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.27 E-value=9.8e-06 Score=72.27 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH----------HHHHHHHHHHHHHHhc---CCcEEEEEeCCC---cHHH
Q psy2520 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDS----------FSASKLIRMMRELTSQ---RKKTVLCTIHQP---SSEL 194 (290)
Q Consensus 131 SgGqrqRv~ia~aL~~~p~llllDEPtsgLD~----------~~~~~i~~~l~~l~~~---~g~tii~~tH~~---~~~~ 194 (290)
+++++.|..++.+...+|.+|++||+.+-++. .....++..+...... .+..||.+|+++ ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 45667777778888889999999999776543 2233444444443111 245677788864 2234
Q ss_pred HhhcCeEEEEe
Q psy2520 195 IDMFDKIILLA 205 (290)
Q Consensus 195 ~~~~d~v~~l~ 205 (290)
.+-|++.+.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 45566655443
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.1e-06 Score=75.08 Aligned_cols=55 Identities=9% Similarity=0.148 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE--EEEEeCC
Q psy2520 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT--VLCTIHQ 189 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t--ii~~tH~ 189 (290)
||.++++|+..|...+.++++++.|+|... ..++...++++.++.|.. +|++-|-
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 899999999999999999999999998643 445666677775555777 8888763
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.4e-07 Score=80.16 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=34.6
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP 53 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~ 53 (290)
..+|++++|+|+||||||||+++|++.+++. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4689999999999999999999999988763 5788776544
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.23 E-value=3.8e-07 Score=77.91 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=26.7
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
....+|++++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4456899999999999999999999998865
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.2e-07 Score=75.59 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=31.3
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~ 54 (290)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccc
Confidence 469999999999999999999999863 6777876544
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.8e-06 Score=76.68 Aligned_cols=139 Identities=16% Similarity=0.177 Sum_probs=77.3
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCC-CCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHh
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRL-PDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL 87 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~-~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~ 87 (290)
-+++|+++.|.||+|||||||+..++... .+. ..| |. ...+.|+.-+..+ ....-......+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~g-----g~------~~~vlyi~~e~~~----~~~~l~~~~~~~ 165 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKG-----GL------SGKAVYIDTEGTF----RWERIENMAKAL 165 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGT-----CC------SCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc--ccC-----CC------CCeEEEEECCCCC----CHHHHHHHHHHh
Confidence 47899999999999999999998887532 221 011 10 1224454433221 122211111111
Q ss_pred cCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChH-HHHHHHHHHHHH---hCCCeEEEeCCCCCCCH-
Q psy2520 88 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG-ERKRLSFATELL---TDPALLLCDEPTTGLDS- 162 (290)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgG-qrqRv~ia~aL~---~~p~llllDEPtsgLD~- 162 (290)
.. .. .++++.+-+ .+ ..+.. +.+.+..++.++ .+|+++++|+.++-...
T Consensus 166 g~----~~-------~~~~~~l~~----~~-----------~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~ 219 (324)
T 2z43_A 166 GL----DI-------DNVMNNIYY----IR-----------AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAE 219 (324)
T ss_dssp TC----CH-------HHHHHTEEE----EE-----------CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHH
T ss_pred CC----CH-------HHHhccEEE----Ee-----------CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhh
Confidence 11 00 112221110 01 13333 335677777777 67999999999875532
Q ss_pred -------H----HHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 163 -------F----SASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 163 -------~----~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
. ...+++..|+.++++.|.+||++.|-.
T Consensus 220 ~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 220 YPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp SCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 1 135566677777666789999988753
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=8.4e-07 Score=75.26 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=27.7
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
-.+.+|.+++|+|++|||||||++.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3577899999999999999999999999753
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.5e-07 Score=88.90 Aligned_cols=43 Identities=42% Similarity=0.519 Sum_probs=36.4
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCcc-EEE-ECCEec
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG-DIR-VNGKPV 54 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G-~I~-i~G~~~ 54 (290)
.+++|++++|+|+||||||||+++|+|++.|. +| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcHH
Confidence 46789999999999999999999999999874 45 674 887654
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.8e-07 Score=77.68 Aligned_cols=40 Identities=35% Similarity=0.505 Sum_probs=31.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCcc--EEEECCEec
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG--DIRVNGKPV 54 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G--~I~i~G~~~ 54 (290)
.+|++++|+|++||||||++++|++.+++ .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 47999999999999999999999997754 25 566665443
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=9.1e-08 Score=82.12 Aligned_cols=55 Identities=27% Similarity=0.306 Sum_probs=42.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC---CCCCCCccEEEE--------CCEecCc-----cccccEEEEccCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL---PDDCIIDGDIRV--------NGKPVEG-----KFRSACGFMYQHD 69 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~---~~~~~~~G~I~i--------~G~~~~~-----~~~~~ig~v~Q~~ 69 (290)
.+.+++|+|||||||||+.++|++.+ .+ .+|+++. +|.++.. .+++.+++++|++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~---d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLL---DSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEE---EHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcc---cCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 35689999999999999999999865 33 3688877 6776642 2556788888853
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.12 E-value=9.4e-07 Score=72.45 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999754
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.09 E-value=7.2e-06 Score=78.00 Aligned_cols=124 Identities=14% Similarity=0.165 Sum_probs=69.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhcCch
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR 91 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~~~~ 91 (290)
++.+++++|||||||||++..|++.+.+. .++|.+-+.++. -+ ...+.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~~D~~----------------r~--~a~eqL~~-------- 146 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVAADVY----------------RP--AAYDQLLQ-------- 146 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCS----------------CH--HHHHHHHH--------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEecCcc----------------ch--hHHHHHHH--------
Confidence 57899999999999999999999887663 355655333210 00 12222222
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC-CC--CCHHHHHHH
Q psy2520 92 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT-TG--LDSFSASKL 168 (290)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt-sg--LD~~~~~~i 168 (290)
+-+..++.-..... ..+--.--+-+++.+...+++++|+|+|- .+ .|+....++
T Consensus 147 -------------~~~~~gv~~~~~~~----------~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el 203 (433)
T 3kl4_A 147 -------------LGNQIGVQVYGEPN----------NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEM 203 (433)
T ss_dssp -------------HHHTTTCCEECCTT----------CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHH
T ss_pred -------------HHHhcCCceeeccc----------cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHH
Confidence 12222332111000 01111112234455555689999999997 34 788877777
Q ss_pred HHHHHHHHhcCCcEEEEEeC
Q psy2520 169 IRMMRELTSQRKKTVLCTIH 188 (290)
Q Consensus 169 ~~~l~~l~~~~g~tii~~tH 188 (290)
.++++.+ ......+++.++
T Consensus 204 ~~i~~~~-~pd~vlLVlDa~ 222 (433)
T 3kl4_A 204 KEMYDVL-KPDDVILVIDAS 222 (433)
T ss_dssp HHHHHHH-CCSEEEEEEEGG
T ss_pred HHHHHhh-CCcceEEEEeCc
Confidence 7776665 333344444444
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.5e-06 Score=69.34 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=24.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~ 34 (290)
+.++.+.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 356677666 99999999999999999887
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.99 E-value=1.1e-06 Score=82.32 Aligned_cols=134 Identities=13% Similarity=0.042 Sum_probs=76.1
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCC-CCCCCCHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL-FSPSLTVYEHLYF 83 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~-~~~~lTv~e~l~~ 83 (290)
++|+.+++|++++|+||||||||||+++|+|.. .|.+..-..+ ...+...+|++||... ++.+.+....+.
T Consensus 161 ~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~~~~~-~~~~~~~lg~~~q~~~~l~dd~~~~~~~~- 232 (377)
T 1svm_A 161 CMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALNVNLP-LDRLNFELGVAIDQFLVVFEDVKGTGGES- 232 (377)
T ss_dssp HHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSC-TTTHHHHHGGGTTCSCEEETTCCCSTTTT-
T ss_pred hcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEEEecc-chhHHHHHHHhcchhHHHHHHHHHHHHHH-
Confidence 467889999999999999999999999999853 4777651111 1122234667777643 233333221100
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHH---cCCC-------------CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhC
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIE---LGLM-------------NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 147 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~---~~l~-------------~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~ 147 (290)
..+...... .....+...++. +.+. ...+.. ...+++|+++|+..+.+++..
T Consensus 233 -r~l~~~~~~---~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~--------~~~l~~~~~~rl~~~~~l~~~ 300 (377)
T 1svm_A 233 -RDLPSGQGI---NNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMN--------EYSVPKTLQARFVKQIDFRPK 300 (377)
T ss_dssp -TTCCCCSHH---HHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEEC--------SCCCCHHHHTTEEEEEECCCC
T ss_pred -hhccccCcc---hHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChh--------HHhhcHHHHHHHhhhhccCCC
Confidence 000000000 001112233320 0011 011112 345889999999988888888
Q ss_pred CCeEE-EeCCCC
Q psy2520 148 PALLL-CDEPTT 158 (290)
Q Consensus 148 p~lll-lDEPts 158 (290)
|++++ ||+|+.
T Consensus 301 pDLliyLd~~~~ 312 (377)
T 1svm_A 301 DYLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHHTCTH
T ss_pred CCeEEEEeCCHH
Confidence 88887 899887
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.4e-07 Score=79.23 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=30.3
Q ss_pred ceEEEEeC---CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 5 ELTGAALS---GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 5 ~is~~~~~---Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++||.+.+ |++++|+|++||||||+.++|++.+
T Consensus 37 ~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 37 KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 67888889 9999999999999999999999854
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.1e-06 Score=77.51 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=25.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.++..+.|.||+|+|||||++.+++...+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35778999999999999999999987643
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.7e-06 Score=77.01 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=23.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++||+||||||||||+++|++++.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999998763
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.2e-05 Score=69.64 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=26.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35788899999999999999999999865
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=9.3e-06 Score=77.16 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=40.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC-------C--CCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD-------D--CIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~-------~--~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.++|+|+||||||||++.|+|.... . ...+|.+.++|+++.- ..++..++.+|....+..+++.+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 7899999999999999999997531 0 0146899999986531 2344445555544445544555555
Q ss_pred HH
Q psy2520 82 YF 83 (290)
Q Consensus 82 ~~ 83 (290)
..
T Consensus 262 ~~ 263 (439)
T 1mky_A 262 EK 263 (439)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.2e-06 Score=78.20 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=33.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~ 54 (290)
++.+++|+|++|||||||++.|+|.+.+. .|+|.+.+.+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecC
Confidence 47899999999999999999999987663 57777766544
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=9.6e-06 Score=69.11 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=24.6
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~ 34 (290)
+.++.+.+| +++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 356677665 99999999999999999876
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00013 Score=63.10 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=29.0
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEeC
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ-RKKTVLCTIH 188 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~g~tii~~tH 188 (290)
.+|+++|+..+.+.++......+..++..+... ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 378999999998888886665555555433211 1257888888
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.1e-06 Score=72.64 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHHhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEE-eCCCcHHHHhhcCe
Q psy2520 131 SGGERKRLSFATELLTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCT-IHQPSSELIDMFDK 200 (290)
Q Consensus 131 SgGqrqRv~ia~aL~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~tii~~-tH~~~~~~~~~~d~ 200 (290)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+.... ..-.+++++ |... ..+.++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~-~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDT-SMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCC-HHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCH-HHHHHHcCC
Confidence 445555543 33578999999999976 688777655555555442 223455555 4553 445566653
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00035 Score=64.71 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=45.2
Q ss_pred HHHHHHHHHH--hCCCeEEEeCCCCCCCHH-------------HH---HHHHHHHHHHHhcCCcEEEEEeCCCcH-----
Q psy2520 136 KRLSFATELL--TDPALLLCDEPTTGLDSF-------------SA---SKLIRMMRELTSQRKKTVLCTIHQPSS----- 192 (290)
Q Consensus 136 qRv~ia~aL~--~~p~llllDEPtsgLD~~-------------~~---~~i~~~l~~l~~~~g~tii~~tH~~~~----- 192 (290)
+-..+++.++ .+|+++++|.+++-.... .. .+++..|..++++.+.+||++.|-...
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 3455666664 689999999999866321 11 233444444446678999998885321
Q ss_pred ----------HHHhhcCeEEEEeCCeE
Q psy2520 193 ----------ELIDMFDKIILLADSRT 209 (290)
Q Consensus 193 ----------~~~~~~d~v~~l~~G~i 209 (290)
.+..++|-++.+...+.
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r~~~ 234 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRRIGA 234 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEEEEE
T ss_pred CCCcccCCCcceeeeccEEEEEEEeee
Confidence 24557887777765543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.75 E-value=2.2e-06 Score=78.86 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=36.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP 53 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~ 53 (290)
++++.+.+|.+++|+|++|||||||++.|++.+.+. .|+|.+-+.+
T Consensus 48 ~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~d 93 (341)
T 2p67_A 48 AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAVD 93 (341)
T ss_dssp HHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred hCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEeec
Confidence 455667889999999999999999999999987653 4666664444
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.74 E-value=3.1e-05 Score=63.46 Aligned_cols=27 Identities=48% Similarity=0.583 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00019 Score=68.14 Aligned_cols=121 Identities=16% Similarity=0.160 Sum_probs=74.5
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 88 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~~~~~~ 88 (290)
=+.+|+++.|.|++|+|||||+..++...... .| ..+.|+.=+ ++..+...
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g--------------~~vl~~slE------~~~~~l~~------ 246 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG--------------VGVGIYSLE------MPAAQLTL------ 246 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC--------------CCEEEEESS------SCHHHHHH------
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC--------------CeEEEEECC------CCHHHHHH------
Confidence 37899999999999999999988777543210 11 124443321 23322111
Q ss_pred CchhhhHHHHHHHHHHHHHHcCCC--CccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHH
Q psy2520 89 LDRRVKAYQRIALINSLLIELGLM--NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSAS 166 (290)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 166 (290)
++. ....++. .... ..||..+.+|+.-|...+.+.++++.|+|.. +. .
T Consensus 247 ------------R~~--~~~~~i~~~~l~~-----------g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~---~ 296 (444)
T 2q6t_A 247 ------------RMM--CSEARIDMNRVRL-----------GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL---M 296 (444)
T ss_dssp ------------HHH--HHHTTCCTTTCCG-----------GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH---H
T ss_pred ------------HHH--HHHcCCCHHHHhC-----------CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH---H
Confidence 000 0112322 2211 2399999999999988888889999888743 33 4
Q ss_pred HHHHHHHHHHhcCCcEEEEEeC
Q psy2520 167 KLIRMMRELTSQRKKTVLCTIH 188 (290)
Q Consensus 167 ~i~~~l~~l~~~~g~tii~~tH 188 (290)
++...++++.++.+..+|++-+
T Consensus 297 ~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 297 EVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEcC
Confidence 4556666665555778888855
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.71 E-value=1.1e-05 Score=78.95 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=32.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEe
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKP 53 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~ 53 (290)
+|+.++|+||||+|||||+++|++.+.+. .|.|.+.|..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~~~ 145 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGGVR 145 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecccc
Confidence 79999999999999999999999988663 5888777643
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=8e-06 Score=69.55 Aligned_cols=42 Identities=31% Similarity=0.443 Sum_probs=34.6
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCcc--EEEECCEe
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDG--DIRVNGKP 53 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G--~I~i~G~~ 53 (290)
.+.+|.+++|+|++||||||+.+.|++.+.|. .| .+.++|..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 35789999999999999999999999987652 57 77777543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.65 E-value=1.6e-05 Score=69.01 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=27.3
Q ss_pred ceEEEEe---CCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 5 ELTGAAL---SGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 5 ~is~~~~---~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++|+++. +|.+++|.||+||||||+++.|+..+.+
T Consensus 15 ~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 15 TENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -----CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4556665 8999999999999999999999987764
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.65 E-value=1.8e-05 Score=67.02 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=25.9
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45899999999999999999999998663
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00036 Score=63.12 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=45.5
Q ss_pred HHHHHHHHHH---hCCCeEEEeCCCCCCC--------HH----HHHHHHHHHHHHHhcCCcEEEEEeCCCcH--------
Q psy2520 136 KRLSFATELL---TDPALLLCDEPTTGLD--------SF----SASKLIRMMRELTSQRKKTVLCTIHQPSS-------- 192 (290)
Q Consensus 136 qRv~ia~aL~---~~p~llllDEPtsgLD--------~~----~~~~i~~~l~~l~~~~g~tii~~tH~~~~-------- 192 (290)
+-+..++.++ .+++++++|.-++-.. .. ...+++..|+.++++.|.+||++.|-...
T Consensus 190 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~ 269 (322)
T 2i1q_A 190 LFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMA 269 (322)
T ss_dssp HHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------C
T ss_pred HHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCC
Confidence 3444455555 4589999999876321 11 13556677777777789999998773211
Q ss_pred -------HHHhhcCeEEEEeC
Q psy2520 193 -------ELIDMFDKIILLAD 206 (290)
Q Consensus 193 -------~~~~~~d~v~~l~~ 206 (290)
.+...+|.++.|..
T Consensus 270 ~~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 270 EQAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp CEESSHHHHHHHCSEEEEEEE
T ss_pred cCCCCcHHHHhcCcEEEEEEe
Confidence 24556788888764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00011 Score=66.38 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=32.4
Q ss_pred hCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 146 TDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 146 ~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
.+|.+|++||+-. .-+...+..+...+..+ .+.|..+|++++.+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~-~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTL-YLLEKQIILASDRH 141 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHH-HHCCCeEEEEecCC
Confidence 5699999999865 33457788899998887 34566777777643
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.59 E-value=2.6e-05 Score=65.56 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G 35 (290)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00015 Score=63.96 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++.-+.|.||+|+|||||++.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 466779999999999999999999764
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.57 E-value=2.6e-05 Score=65.10 Aligned_cols=39 Identities=36% Similarity=0.373 Sum_probs=29.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCE
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK 52 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~ 52 (290)
.+++|+|++|||||||++.|.+.+++....-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 579999999999999999999876442222466766553
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=3.2e-05 Score=64.36 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=26.4
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47888889999999999999999999999975
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.53 E-value=1.9e-05 Score=74.90 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=39.4
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE 55 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~ 55 (290)
.++++. +|++++++|+|||||||++..|++.+.+. .|+|.+.+.++.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecccc
Confidence 356776 89999999999999999999999998873 578888776653
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.52 E-value=3.5e-05 Score=63.94 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=28.2
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.....+|.+++|+|++||||||+.+.|+..+.+
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345568999999999999999999999987764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.47 E-value=5.4e-05 Score=70.28 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=24.9
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~ 34 (290)
+..+.+.+| +++|+|||||||||+|.+|.
T Consensus 18 ~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 18 NSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 356777776 99999999999999999876
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.42 E-value=5.3e-05 Score=66.42 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=32.8
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~ 54 (290)
...++.++.|+|++||||||+.+.|+..+.. +.+.+++-.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHHH
Confidence 3567889999999999999999999987642 5677777443
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00011 Score=60.35 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=7.8e-05 Score=60.34 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998653
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.36 E-value=7.5e-05 Score=62.74 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999754
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.36 E-value=1.7e-05 Score=71.79 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=36.3
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEec
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPV 54 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~ 54 (290)
+++..+ |++++++|+||+||||++..|++.+.+. .|+|.+.+.+.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D~ 136 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGADV 136 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecCC
Confidence 666665 9999999999999999999999988763 46777655443
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.36 E-value=9.6e-05 Score=60.95 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999853
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=7.3e-05 Score=70.23 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=33.8
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcC-----------CCCCCCCccEEEECCE
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQR-----------LPDDCIIDGDIRVNGK 52 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~-----------~~~~~~~~G~I~i~G~ 52 (290)
+-..+..|..++|+|+||+|||||++.|+|. ..| ..|.|.+.+.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p---~~g~v~v~~~ 69 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDP---NESRVPVPDE 69 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CC---SEEEEECCCH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCc---eeEEEEECCc
Confidence 4456678889999999999999999999997 333 3688877664
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00017 Score=62.58 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=40.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeC---------CCcHHHHhhcCeEEEEe
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH---------QPSSELIDMFDKIILLA 205 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH---------~~~~~~~~~~d~v~~l~ 205 (290)
+|+++++||--. |+.. +++.+..++. .|.+||++-| .....+..+||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999954 5543 5555666644 4899999999 45567888999999874
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0017 Score=59.68 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+..-+.|.||+|+|||||+++|+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999754
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.001 Score=57.61 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+..-+.|.||+|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999999753
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0045 Score=59.46 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=47.6
Q ss_pred HHHHHHHHHHH--hCCCeEEEeCCCCCC-------CH-HHHHHHHHHHHHHHhcCCcEEEEEeCCCc-------------
Q psy2520 135 RKRLSFATELL--TDPALLLCDEPTTGL-------DS-FSASKLIRMMRELTSQRKKTVLCTIHQPS------------- 191 (290)
Q Consensus 135 rqRv~ia~aL~--~~p~llllDEPtsgL-------D~-~~~~~i~~~l~~l~~~~g~tii~~tH~~~------------- 191 (290)
.+.++.++.++ .+|+++++|=-+. + +. ....+++..|+.++++.|.+||+++|-..
T Consensus 340 ~~i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p 418 (503)
T 1q57_A 340 DRLLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPV 418 (503)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCC
Confidence 34455555554 4799999995432 2 21 23356788888887778999999988531
Q ss_pred --------HHHHhhcCeEEEEe
Q psy2520 192 --------SELIDMFDKIILLA 205 (290)
Q Consensus 192 --------~~~~~~~d~v~~l~ 205 (290)
..+...+|-|++|.
T Consensus 419 ~l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 419 SITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp CSSSCSSSSHHHHHCSEEEEEE
T ss_pred ChhhhccchHhhecCcEEEEEE
Confidence 12556799999986
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00015 Score=58.77 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00015 Score=62.74 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.4
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-.-.+|.+++|+|++||||||+.+.|++.
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999999974
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00026 Score=58.77 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=20.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+..++. .++|+|++|+|||||++.+.+-
T Consensus 16 ~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 16 SLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 567777777 6799999999999999999973
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00018 Score=58.89 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=23.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00013 Score=60.02 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.++|+|++|+|||||++.++|...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998643
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00063 Score=74.13 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=25.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.+|+++.|.||+|+|||||+..++...
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 8899999999999999999998887644
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00014 Score=63.43 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
-+.|.||+|+|||||+++|++...
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 388999999999999999998754
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=4.8e-05 Score=70.53 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=20.5
Q ss_pred EEEECCCCChHHHHHHHHHcCCCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++|+|++|+|||||++.|.|....
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC-
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCC
Confidence 499999999999999999886543
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00024 Score=58.51 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998744
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00023 Score=62.06 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-+++|.||+||||||+.+.|+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999964
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00025 Score=63.54 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=28.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG 51 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G 51 (290)
..|.++.|.||||||||||.+.|+..++. |.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~-----~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEec
Confidence 35789999999999999999999875432 5566665
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00011 Score=68.90 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=30.2
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
|+++.+.+|+.++|+||+|||||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 577889999999999999999999999998764
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00012 Score=61.20 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=30.3
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCC----CCC-CCCccEEEECCE
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQRL----PDD-CIIDGDIRVNGK 52 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~----~~~-~~~~G~I~i~G~ 52 (290)
+|+..++++ ++|+|++|+|||||++.+.+-. .|+ ....+.+.++|.
T Consensus 19 ~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 19 LGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp HTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred hhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 345556664 7899999999999999998632 121 113456666653
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00025 Score=62.26 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.3
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999753
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00025 Score=58.58 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00028 Score=56.79 Aligned_cols=19 Identities=37% Similarity=0.635 Sum_probs=18.2
Q ss_pred EEEEECCCCChHHHHHHHH
Q psy2520 15 LVAIMGASGAGKSTLLAAL 33 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l 33 (290)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00031 Score=59.65 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHc
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0011 Score=61.57 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.5
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHc
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
=+.+|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999999876653
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00033 Score=58.93 Aligned_cols=24 Identities=50% Similarity=0.702 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999876543
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=8.9e-05 Score=68.61 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=27.3
Q ss_pred eEEEEeCCeE--EEEECCCCChHHHHHHHHHcCC
Q psy2520 6 LTGAALSGTL--VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 6 is~~~~~Ge~--~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 15 l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 15 LDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3455678888 9999999999999999999865
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00036 Score=57.98 Aligned_cols=23 Identities=52% Similarity=0.797 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999754
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00044 Score=57.70 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0004 Score=57.13 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00024 Score=64.67 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=27.2
Q ss_pred EEEeCCeE--EEEECCCCChHHHHHHHHHcCCCC
Q psy2520 8 GAALSGTL--VAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 8 ~~~~~Ge~--~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
..++.|++ +.+.||+|+|||||++++++.+.+
T Consensus 39 ~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 39 KFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34567877 999999999999999999987654
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00038 Score=57.15 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++.++.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999853
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0005 Score=57.48 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999976543
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00046 Score=56.17 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHHc
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G 35 (290)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00043 Score=56.68 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999753
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00037 Score=61.46 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
|||+.+.....++++.+.+...+...+..+..|.. .++.+.++++.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~-~~~e~~~~~l~~ 190 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD-EDIEREIKHISE 190 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC-HHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC-HHHHHHHHHHHH
Confidence 99999999999999999887555455555666664 466666665443
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00021 Score=60.12 Aligned_cols=25 Identities=48% Similarity=0.675 Sum_probs=22.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00051 Score=57.12 Aligned_cols=24 Identities=38% Similarity=0.536 Sum_probs=21.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999975
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00056 Score=57.38 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00059 Score=56.40 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++.+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00069 Score=55.74 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+.+++|+|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998853
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0013 Score=54.22 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999766653
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0031 Score=69.75 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=47.2
Q ss_pred HHHHHHHHHH--hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HhcCCcEEEEEeCCCcH-----
Q psy2520 136 KRLSFATELL--TDPALLLCDEPTTGLD-S------------FSASKLIRMMREL---TSQRKKTVLCTIHQPSS----- 192 (290)
Q Consensus 136 qRv~ia~aL~--~~p~llllDEPtsgLD-~------------~~~~~i~~~l~~l---~~~~g~tii~~tH~~~~----- 192 (290)
+-+.+++.++ .+|+++++|.-++-.. + ...+.+...|+.+ +++.|.+||++.|-...
T Consensus 448 ~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~ 527 (2050)
T 3cmu_A 448 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 527 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCS
T ss_pred HHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccccccccc
Confidence 3455666654 5799999999876552 1 1223344555554 56789999999874221
Q ss_pred ----------HHHhhcCeEEEEeCCe
Q psy2520 193 ----------ELIDMFDKIILLADSR 208 (290)
Q Consensus 193 ----------~~~~~~d~v~~l~~G~ 208 (290)
.+..++|-++.|....
T Consensus 528 g~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 528 GNPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp SCCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred CCCcCCCCcchhhhhCCEEEEEEecc
Confidence 2566789888876544
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00065 Score=57.03 Aligned_cols=27 Identities=37% Similarity=0.486 Sum_probs=24.1
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998644
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0044 Score=58.88 Aligned_cols=54 Identities=9% Similarity=0.144 Sum_probs=39.2
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE--EEEEeC
Q psy2520 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT--VLCTIH 188 (290)
Q Consensus 130 LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~t--ii~~tH 188 (290)
|+..+.+|+.-|...+.+.+++|.|+|. +++ .++...++++.++.|.. +|++-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~---~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSV---NYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBH---HHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH---HHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7888889998888888888899998874 444 44555556654445677 888855
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00063 Score=55.89 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987543
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.015 Score=63.54 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=44.9
Q ss_pred HHHHHHHH--hCCCeEEEeCCCCCCCHH-------------HHHHHHHHHHH---HHhcCCcEEEEEeCCCc--------
Q psy2520 138 LSFATELL--TDPALLLCDEPTTGLDSF-------------SASKLIRMMRE---LTSQRKKTVLCTIHQPS-------- 191 (290)
Q Consensus 138 v~ia~aL~--~~p~llllDEPtsgLD~~-------------~~~~i~~~l~~---l~~~~g~tii~~tH~~~-------- 191 (290)
+.+++.++ .+|+++++|..++-.... ..+.+.+.+++ ++++.|.+||++.|-..
T Consensus 450 l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~ 529 (1706)
T 3cmw_A 450 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 529 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSC
T ss_pred HHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCC
Confidence 34555554 579999999998766411 12233344444 34667999999988521
Q ss_pred -------HHHHhhcCeEEEEeCCe
Q psy2520 192 -------SELIDMFDKIILLADSR 208 (290)
Q Consensus 192 -------~~~~~~~d~v~~l~~G~ 208 (290)
..+..++|-++.+...+
T Consensus 530 ~~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 530 PETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp CEEESSCSHHHHHEEEEEEEEEEE
T ss_pred CccCCCCcceeeeCCEEEEEEecc
Confidence 13567889888876543
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00067 Score=55.76 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|||||||++.+++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00075 Score=55.93 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999876543
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00072 Score=56.45 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999753
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0012 Score=58.59 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0005 Score=63.92 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=37.8
Q ss_pred CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH
Q psy2520 147 DPALLLCDEPTTGLD---SFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192 (290)
Q Consensus 147 ~p~llllDEPtsgLD---~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~ 192 (290)
.|.++++||--.-++ +.....+.++++.. ++.|..++++||.+.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~-Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRI-RKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHG-GGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHh-hhhCeEEEEEcCCHHH
Confidence 589999999988774 67778888888887 6679999999999853
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00081 Score=53.52 Aligned_cols=23 Identities=17% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0009 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999754
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00093 Score=53.28 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0015 Score=60.50 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=28.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC-----C--C-CCCccEEEECC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP-----D--D-CIIDGDIRVNG 51 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~-----~--~-~~~~G~I~i~G 51 (290)
|-.++|+|.+|+|||||++.|+|-.. | + ....|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998331 0 0 12357787766
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00071 Score=55.38 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=18.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998643
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00093 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999988643
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0011 Score=56.25 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|-+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999864
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00096 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00096 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00084 Score=53.01 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998753
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.001 Score=55.12 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++.+++|+|++||||||+.+.|+..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.001 Score=53.09 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.5
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|+|++|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00074 Score=53.81 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
-++|+|++|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 378999999999999999987543
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.001 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999865
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.001 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0011 Score=52.83 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0011 Score=56.68 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++.+++|+|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=53.46 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|||||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=53.38 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00095 Score=53.78 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=55.38 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
..+-+++|+|+.||||||+.+.|+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44668999999999999999999864
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.001 Score=60.07 Aligned_cols=23 Identities=48% Similarity=0.566 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999864
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=55.70 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998743
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00085 Score=55.02 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.8
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
=.++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00099 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0014 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=54.09 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.001 Score=54.68 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0011 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0017 Score=52.31 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.-.++|+|++|+|||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34568999999999999999998743
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0011 Score=54.23 Aligned_cols=23 Identities=52% Similarity=0.615 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|||||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=53.44 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0011 Score=53.30 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=55.30 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999987543
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0013 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0016 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0015 Score=55.23 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0016 Score=54.34 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
..+++|+|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0015 Score=52.57 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0014 Score=52.34 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.3
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
=.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0015 Score=53.43 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
-++|+|+.|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4799999999999999999987654
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0012 Score=53.84 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.2
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=53.85 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999754
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0016 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
..+++|+|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0018 Score=56.73 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0013 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0015 Score=51.79 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.1
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999753
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0013 Score=55.91 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999864
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0016 Score=52.48 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.00085 Score=54.45 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHc
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
.=.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44689999999999999998874
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0016 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998753
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0017 Score=58.47 Aligned_cols=27 Identities=48% Similarity=0.601 Sum_probs=23.1
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++.| .++|+|++|+|||||++.|.|..
T Consensus 5 ~~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 5 TYSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp CEEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 3455 69999999999999999999853
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0017 Score=52.20 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=56.42 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998743
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0019 Score=57.46 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
...+.|.||+|+|||||.++|++...+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 468999999999999999999987654
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0015 Score=52.53 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0017 Score=53.10 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0015 Score=57.38 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999864
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0019 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.-+++|+|+.||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0018 Score=52.24 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0016 Score=60.43 Aligned_cols=21 Identities=48% Similarity=0.711 Sum_probs=19.8
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0023 Score=55.61 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++-+++|+||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999853
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=54.32 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|+|||||++.+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0014 Score=57.85 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999988753
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0019 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.002 Score=53.41 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0034 Score=53.44 Aligned_cols=29 Identities=41% Similarity=0.422 Sum_probs=24.7
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+....|..++|+||+|||||||...|+..
T Consensus 29 ~v~~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 29 LVDIYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 44457889999999999999999998864
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0018 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.002 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.002 Score=52.76 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0026 Score=51.37 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999998754
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0025 Score=53.14 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.3
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999997654
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0024 Score=54.59 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+++|+|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999854
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0019 Score=53.06 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0022 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0021 Score=52.42 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.=.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0022 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0022 Score=56.29 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|||||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0016 Score=54.18 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.002 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0012 Score=59.30 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=19.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998643
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.002 Score=55.98 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|||||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.002 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0037 Score=56.79 Aligned_cols=31 Identities=35% Similarity=0.356 Sum_probs=25.9
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+..+.+ .|.-++|+|+||+|||||...|.+.
T Consensus 137 ~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 137 GVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp SEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 444455 7889999999999999999998874
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0013 Score=55.45 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0022 Score=57.02 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.7
Q ss_pred CeEEEEECCCCChHHHHHHHHHc
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0025 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0025 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998643
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0024 Score=52.94 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0022 Score=56.81 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0043 Score=56.91 Aligned_cols=26 Identities=38% Similarity=0.644 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46799999999999999999999765
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0024 Score=53.81 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=21.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-.++|+|+.|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0026 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0026 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998643
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0022 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0024 Score=51.75 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G 35 (290)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0024 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0027 Score=52.09 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0025 Score=56.88 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0024 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999999754
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0027 Score=51.82 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0028 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0028 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0019 Score=56.53 Aligned_cols=34 Identities=26% Similarity=0.196 Sum_probs=23.8
Q ss_pred ccceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 3 ELELTGAALSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 3 ~~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
..|.+ ...++.+++|.|+.||||||+.+.|+..+
T Consensus 15 ~~~~~-~~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 15 FSASS-EGTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp ---------CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred Ccccc-cccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34444 34678899999999999999999988765
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0028 Score=52.74 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.=-++|+|+.|+|||||++.+.+-.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998653
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0026 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998643
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0027 Score=51.96 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
=.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35799999999999999999963
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0026 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.2
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0025 Score=52.97 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0029 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
=-++|+|+.|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999998754
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0033 Score=55.82 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHHc
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G 35 (290)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0037 Score=53.44 Aligned_cols=29 Identities=41% Similarity=0.651 Sum_probs=24.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
-+|.+++|.|++||||||+.+.|+..+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999876653
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.003 Score=53.60 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+|-.++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998643
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0027 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-.++|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0032 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.003 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999863
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.002 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0026 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999887643
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0031 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
-++|+|++|+|||||++.+.+...+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4799999999999999999986543
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0024 Score=51.53 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0025 Score=51.92 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999974
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0035 Score=51.77 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=20.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.=-++|+|+.|+|||||++.+.+-.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998653
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.003 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0035 Score=51.49 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999999888643
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0034 Score=50.71 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=21.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+..+.|.||+|+|||||++.++..+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998754
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0044 Score=53.13 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
..+..+.|+|+.||||||+.+.|+..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999864
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0044 Score=59.28 Aligned_cols=30 Identities=23% Similarity=0.578 Sum_probs=25.8
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.+-+|+..+|+||+|+|||||++.|+....
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 356899999999999999999999886543
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0036 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998654
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0032 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0045 Score=51.77 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=30.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~ 191 (290)
+|.++++||.-. +|+.....+.+.+.+. ..+..+|++|+++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 578999999765 7888777777776543 23677888888753
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.003 Score=55.82 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|..|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999865
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0035 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0039 Score=57.25 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=21.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999764
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0023 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=9.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998864
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.003 Score=53.32 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.9
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998753
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0033 Score=54.43 Aligned_cols=29 Identities=34% Similarity=0.555 Sum_probs=21.9
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
..+|.+++|.|++||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999987654
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0038 Score=58.72 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+..++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999998853
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0058 Score=52.13 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=42.4
Q ss_pred HhCCCeEEEeCCCC----CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHH---------HHhhcCeEEEEe
Q psy2520 145 LTDPALLLCDEPTT----GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE---------LIDMFDKIILLA 205 (290)
Q Consensus 145 ~~~p~llllDEPts----gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~---------~~~~~d~v~~l~ 205 (290)
..+|+++++|--+. .-|.....+++..|+.++++.|.++++++|-.... +...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 46889999986432 22455667788888888778899999998853211 234688888775
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0042 Score=54.06 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999876543
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.013 Score=65.01 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=25.9
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
=+.+|+++.|.|++|+|||||+..++....
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a 757 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999988876443
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0054 Score=55.77 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=22.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.+++|+||+|||||||...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999754
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0036 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999753
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0051 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+..++.|+||.||||+|..+.|+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44568899999999999999999854
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0039 Score=54.59 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0034 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
=-++|+|+.|+|||||++.+.+-
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998753
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0041 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999865
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0082 Score=49.97 Aligned_cols=29 Identities=31% Similarity=0.259 Sum_probs=24.2
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHc
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
++..-.|.-++|.|+||+|||||...|..
T Consensus 10 s~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 10 NFLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44455788999999999999999887764
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0041 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0053 Score=52.54 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
+|.++++-|++||||||+.+.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999876653
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0051 Score=52.28 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0052 Score=56.04 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999754
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0057 Score=52.67 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
|.+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999997653
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0066 Score=52.39 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999987553
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.005 Score=51.98 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-.++|+|+.|+|||||++.++.-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999888643
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0022 Score=53.87 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988864
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0044 Score=58.86 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0058 Score=52.43 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=25.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.+|.++++-|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999987654
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0023 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=4.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998875
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0051 Score=51.21 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998653
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0055 Score=54.04 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.++++|.+|+|||||+|.|.|....
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred heEEeCCCCCCHHHHHHHHhccccc
Confidence 7899999999999999999987543
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.036 Score=48.10 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=41.1
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCC---------CcHHHHhhcCeEEEEe
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ---------PSSELIDMFDKIILLA 205 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~---------~~~~~~~~~d~v~~l~ 205 (290)
.+.+++++||----.| +.++++.+ .+.|+.||++.++ ....+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l-~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAM-ANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHH-HHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHH-HhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999977654 44555554 3358999999999 6667889999999874
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0068 Score=50.46 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=36.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc---------HHHHhhcCeEEEEeC
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS---------SELIDMFDKIILLAD 206 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~---------~~~~~~~d~v~~l~~ 206 (290)
+++++++||--. +++ .+.+.|+.+..+ |..|+++.++.+ ..+..++|.+.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999743 443 355667766444 889999888432 345667998877753
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.02 Score=55.03 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=54.1
Q ss_pred CCCCChHHHHHHHHHHHH--Hh---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCC
Q psy2520 127 KVVLSGGERKRLSFATEL--LT---------------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL--~~---------------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~ 189 (290)
.+.+||||+|-.-+|.+. +. .-.+++|||. +-+|.......+++++++ |.-+|+++=+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP~ 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAPE 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEESS
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECcc
Confidence 456999999965544433 22 2257999999 999999999999999987 6788888865
Q ss_pred CcHHHHhhcCeEEEEe
Q psy2520 190 PSSELIDMFDKIILLA 205 (290)
Q Consensus 190 ~~~~~~~~~d~v~~l~ 205 (290)
.+..+.|.++.+-
T Consensus 452 ---~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 ---NISPERGTTYKLV 464 (483)
T ss_dssp ---SCCCSSSEEEECC
T ss_pred ---hhhhccCceEEEE
Confidence 2456778877764
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0062 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0034 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.0
Q ss_pred CeEEEEECCCCChHHHHHHHHHc
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
.=-++|+|+.|+|||||++.+.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34689999999999999999864
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0056 Score=51.72 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0056 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
=.++|+|+.|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999988854
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0073 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++.|+||.||||+|..+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0086 Score=54.32 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
..+++|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999999654
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0062 Score=50.74 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998643
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.007 Score=54.53 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=36.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 201 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v 201 (290)
++.++++|| ...+++.....+.+.+.+. .. ...+|++++++......+.+|+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~-~~-~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETY-SG-VTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHT-TT-TEEEEEEESCGGGSCHHHHHHS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhc-CC-CceEEEEeCchhhCcchhhccC
Confidence 567999999 7889999888888888876 33 4557777766543233344443
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.009 Score=49.33 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=29.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
++.++++||. ..+++.....+...+... . .+..+|+++..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-S-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-T-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-C-CCCeEEEEeCCh
Confidence 6789999995 557777777777777664 2 356677777664
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0087 Score=47.43 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=29.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~ 190 (290)
+..+|++||. ..|++..+..++..|... ..+..+|++|..+
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 3467999998 468888888888888443 2345677777754
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0094 Score=55.97 Aligned_cols=25 Identities=36% Similarity=0.642 Sum_probs=21.7
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-.+++|+||+|||||||...|+..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999998654
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0074 Score=54.78 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999998765
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0044 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.|.||+|+|||||+++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999999753
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.011 Score=52.48 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++..+.|.||+|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999888755
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.01 Score=54.41 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=22.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.-+++|+|+.|+|||||++.|++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999987653
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.013 Score=53.38 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=24.5
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHc
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3577888999999999999999998874
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0096 Score=55.74 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.3
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|+|.+++|||||++.|+|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.012 Score=53.23 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999865
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.013 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+...+.|.||+|+|||||.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4457889999999999999999975
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.01 Score=56.04 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.0041 Score=51.61 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G 35 (290)
-++|+|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 479999999999999988875
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.015 Score=52.36 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=22.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
+.-+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987543
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.013 Score=53.21 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
+|..+.|.||+|+|||||.+.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 466899999999999999999997654
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.91 E-value=0.008 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHH-HHcC
Q psy2520 15 LVAIMGASGAGKSTLLAA-LSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~-l~G~ 36 (290)
.++|+|+.|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999998 5554
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.014 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-.+||+|+.||||||+.+.|+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999854
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.018 Score=51.70 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=21.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+--++|+|++|+|||||++.+.+-.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3458999999999999999988753
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.016 Score=55.04 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999976654
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.017 Score=48.92 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=23.0
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
|.+++|=|+-||||||+.+.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999997664
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.015 Score=51.82 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
-.++|+|.+|+|||||+|.|.|...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 3689999999999999999998653
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.0078 Score=55.11 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.012 Score=56.31 Aligned_cols=24 Identities=54% Similarity=0.682 Sum_probs=21.4
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
|=.++|+|++|+|||||++.|+|.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 445899999999999999999984
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.81 E-value=0.016 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+..-+.|.||+|+|||+|.++++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4456899999999999999999875
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.015 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.9
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.-+.|.||+|+|||||.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999765
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.014 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.9
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
..+.|.||+|+|||+|.++|+..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467788999999999999999754
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.014 Score=53.94 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++..++++|++|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 3556899999999999999999986
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.015 Score=53.12 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++.-+.|.||+|+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999999765
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.017 Score=52.62 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+..+.|.||.|+|||||++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998754
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=94.65 E-value=0.011 Score=56.08 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=23.3
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.+++|+|++|+||||+...|++.+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987653
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.0026 Score=52.69 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999888643
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.014 Score=56.85 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.9
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-.++|+|..|+|||||+|.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999864
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.02 Score=51.07 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
|.++.|.||.|+|||||++.++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999998753
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.014 Score=57.54 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.9
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-.++|+|+.|+|||||+|.|+|..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 468999999999999999999964
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.01 Score=56.43 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.+.|.||+|+|||||.++|+.....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4899999999999999999987643
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.02 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
..+.|.||+|+|||||++.++....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999987643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 290 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-32 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-32 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-31 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-31 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-30 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 8e-29 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-28 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-28 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-28 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 7e-28 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 9e-28 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-27 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-27 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-26 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-26 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-20 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-20 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-18 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-09 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 1e-06 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 5e-06 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 6e-06 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 5e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 6e-05 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 2e-04 | |
| d1lvga_ | 190 | c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu | 3e-04 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 4e-04 | |
| d1y63a_ | 174 | c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma | 6e-04 | |
| d1kgda_ | 178 | c.37.1.1 (A:) Guanylate kinase-like domain of Cask | 7e-04 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 8e-04 | |
| d1ko7a2 | 169 | c.91.1.2 (A:130-298) HPr kinase HprK C-terminal do | 0.001 | |
| d1g8pa_ | 333 | c.37.1.20 (A:) ATPase subunit of magnesium chelata | 0.001 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 0.001 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 0.002 | |
| d2vp4a1 | 197 | c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr | 0.002 | |
| d1rz3a_ | 198 | c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci | 0.002 | |
| d1ly1a_ | 152 | c.37.1.1 (A:) Polynucleotide kinase, kinase domain | 0.002 | |
| d1lw7a2 | 192 | c.37.1.1 (A:220-411) Transcriptional regulator Nad | 0.002 | |
| d1bifa1 | 213 | c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct | 0.003 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 0.004 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 0.004 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 117 bits (295), Expect = 3e-32
Identities = 59/213 (27%), Positives = 97/213 (45%), Gaps = 18/213 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
G VA +G SG GKSTL+ + R D + G I ++G ++ R+ G + Q
Sbjct: 43 KGETVAFVGMSGGGKSTLINLIP-RFYD--VTSGQILIDGHNIKDFLTGSLRNQIG-LVQ 98
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
D S TV E++ D V ++A + ++ L T +G +
Sbjct: 99 QDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLP--QGYDTEVGERGVK-- 154
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+++RLS A L +P +L+ DE T+ LD S S + + L + +T L
Sbjct: 155 --LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL--SKDRTTLIVA 210
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S+ I DKI+++ + G+ +A
Sbjct: 211 HRLST--ITHADKIVVIENGHIVETGTHRELIA 241
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 116 bits (291), Expect = 6e-32
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 20/204 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGF 64
G V+IMG SG+GKST+L + +G++ ++ R GF
Sbjct: 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGF 87
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
++Q P LT E++ + K + +R L L +
Sbjct: 88 VFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ-- 145
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+++R++ A L +P ++L D+PT LDS + K+++++++L + KTV+
Sbjct: 146 -----LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVV 200
Query: 185 CTIHQPSSELIDMFDKIILLADSR 208
H + ++II L D
Sbjct: 201 VVTHDI--NVARFGERIIYLKDGE 222
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 115 bits (290), Expect = 1e-31
Identities = 45/206 (21%), Positives = 86/206 (41%), Gaps = 17/206 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDL 70
G + ++G SG GK+T L ++ +G I + V ++Q
Sbjct: 32 GEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYA 88
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
P +TVYE++ F + ++ + + L + + L
Sbjct: 89 VWPHMTVYENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQ--------L 137
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGG+R+R++ A ++ +P +LL DEP + LD+ + +++L + K T + H
Sbjct: 138 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 197
Query: 191 SSELIDMFDKIILLADSRTAFIGSKD 216
E + M D+I ++ + IGS
Sbjct: 198 -VEAMTMGDRIAVMNRGQLLQIGSPT 222
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 115 bits (289), Expect = 2e-31
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 13/210 (6%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRL--PDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
G VA++G SG+GKST+ + + R D+ I D + R+ + Q+
Sbjct: 41 GKTVALVGRSGSGKSTIASLI-TRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH 99
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
Y +++ R+A + ++ N T IG + + L
Sbjct: 100 LFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD--NGLDTIIGENGVL----L 153
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGG+R+R++ A LL D +L+ DE T+ LD+ S + + EL Q+ +T L H+
Sbjct: 154 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLVIAHRL 211
Query: 191 SSELIDMFDKIILLADSRTAFIGSKDAALA 220
S I+ D+I+++ D G+ LA
Sbjct: 212 S--TIEQADEIVVVEDGIIVERGTHSELLA 239
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 111 bits (279), Expect = 6e-30
Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 28/219 (12%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF-----RSACGFMYQ 67
G + I+G +G+GKSTL+ ++ L D +G + K + K +Q
Sbjct: 30 GDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQ 86
Query: 68 HDLFSPSLTVYEHLYF----------MALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 117
+TV E+L +L K + + +L L L +
Sbjct: 87 TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR 146
Query: 118 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 177
+ G LSGG+ K + L+T+P +++ DEP G+ A + + EL
Sbjct: 147 KAGE--------LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK- 197
Query: 178 QRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
+ T L H+ +++ D + ++ + + G +
Sbjct: 198 AKGITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGE 235
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 109 bits (273), Expect = 8e-29
Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 23/208 (11%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 72
G ++AI G++G+GK++LL + L +G I+ +G+ F Q
Sbjct: 62 GEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR---------VSFCSQFSWIM 109
Query: 73 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 132
P T+ E++ F R + L + +T +G +T LSG
Sbjct: 110 PG-TIKENIIFGVSYDEYRYKSVVKACQLQQDIT---KFAEQDNTVLGEGGVT----LSG 161
Query: 133 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 192
G+R R+S A + D L L D P LD F+ ++ KT + +
Sbjct: 162 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSKM-- 218
Query: 193 ELIDMFDKIILLADSRTAFIGSKDAALA 220
E + DKI++L + F G+ +
Sbjct: 219 EHLRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 107 bits (269), Expect = 2e-28
Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 31/221 (14%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---------------- 56
G +++I+G+SG+GKST L ++ L +G I VNG+ +
Sbjct: 28 GDVISIIGSSGSGKSTFLRCIN-FLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQL 84
Query: 57 -KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ 115
R+ ++QH +TV E++ + + + L ++G+
Sbjct: 85 RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERA 142
Query: 116 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175
+ LSGG+++R+S A L +P +LL DEPT+ LD +++R+M++
Sbjct: 143 QGKYPVH-------LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ- 194
Query: 176 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
++ KT++ H+ + +I L + G +
Sbjct: 195 LAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPE 234
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 105 bits (264), Expect = 6e-28
Identities = 47/211 (22%), Positives = 97/211 (45%), Gaps = 22/211 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFM 65
G + ++GASGAGKSTL+ ++ +G + V+G+ + K R G +
Sbjct: 31 GQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMI 87
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+QH S TV+ ++ L + + LL +GL + + +
Sbjct: 88 FQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGDKHDSYPSN---- 140
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSGG+++R++ A L ++P +LLCDE T+ LD + ++ +++++ + T+L
Sbjct: 141 ----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL 196
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
H+ + + D + ++++ +
Sbjct: 197 ITHEM-DVVKRICDCVAVISNGELIEQDTVS 226
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 105 bits (264), Expect = 6e-28
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 15/206 (7%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDC--IIDGDIRVNGKPVEGKFRSACGFMYQHDL 70
G +V ++GA+GAGK+T L+A++ + II + KP R + +
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR 91
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
P LTVYE+L A + D+ + + I SL L G+ L
Sbjct: 92 IFPELTVYENLMMGAYNRKDKE-GIKRDLEWIFSLF--PRLKERLKQLGGT--------L 140
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGGE++ L+ L++ P LL+ DEP+ GL S++ +++++ +Q T+L
Sbjct: 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLVEQNA 199
Query: 191 SSELIDMFDKIILLADSRTAFIGSKD 216
+ + +L + G
Sbjct: 200 -LGALKVAHYGYVLETGQIVLEGKAS 224
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 105 bits (263), Expect = 7e-28
Identities = 42/207 (20%), Positives = 91/207 (43%), Gaps = 19/207 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHD 69
G + ++G +GAGK+T L +S + G + V GK V + R ++ +
Sbjct: 28 GEIFGLIGPNGAGKTTTLRIISTLIKPSS---GIVTVFGKNVVEEPHEVRKLISYLPEEA 84
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
++ E+L F+A + + ++ GL R+ +
Sbjct: 85 GAYRNMQGIEYLRFVAGF---YASSSSEIEEMVERATEIAGLGEKIKDRVST-------- 133
Query: 130 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189
S G ++L A L+ +P L + DEPT+GLD +A ++ +++++ + + ++ + +
Sbjct: 134 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 193
Query: 190 PSSELIDMFDKIILLADSRTAFIGSKD 216
E+ + D+I L+ + G+ +
Sbjct: 194 --LEVEFLCDRIALIHNGTIVETGTVE 218
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 105 bits (263), Expect = 9e-28
Identities = 46/213 (21%), Positives = 94/213 (44%), Gaps = 18/213 (8%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
G ++ I+G SG+GKSTL + + + + ++G + R G + Q
Sbjct: 28 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENG---QVLIDGHDLALADPNWLRRQVGVVLQ 84
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
D + ++ +++ +V ++A + + EL + +
Sbjct: 85 -DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG---- 139
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ + +TV+
Sbjct: 140 --LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI--CKGRTVIIIA 195
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
H+ S + D+II++ + G L+
Sbjct: 196 HRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (263), Expect = 1e-27
Identities = 43/213 (20%), Positives = 84/213 (39%), Gaps = 15/213 (7%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQ 67
G + A++G +G+GKST+ A L + ++GKP+ + Q
Sbjct: 39 PGEVTALVGPNGSGKSTVAALLQNLYQPTGG---QLLLDGKPLPQYEHRYLHRQVAAVGQ 95
Query: 68 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 127
Y + + A + +S + GL T + +
Sbjct: 96 EPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFI--SGLPQGYDTEVDEAGSQ-- 151
Query: 128 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 187
LSGG+R+ ++ A L+ P +L+ D+ T+ LD+ S ++ +++ E + ++VL
Sbjct: 152 --LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLIT 209
Query: 188 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
S L++ D I+ L G+ +
Sbjct: 210 QHLS--LVEQADHILFLEGGAIREGGTHQQLME 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 103 bits (258), Expect = 5e-27
Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 24/224 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
+++A G SG GKST+ + L + G+I ++G+P++ +RS GF+ Q
Sbjct: 28 NSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQD 84
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
Y + D + +A S + + + +T +G +
Sbjct: 85 SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM--PDQLNTEVGERGVK--- 139
Query: 129 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 188
+SGG+R+RL+ A L +P +L+ DE T LDS S S + + + L + +T L H
Sbjct: 140 -ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL--MKGRTTLVIAH 196
Query: 189 QPSSELIDMFDKIILLADSRTAFIGSKDAALA-------FLESQ 225
+ S+ I DKI + + G + +A ++ Q
Sbjct: 197 RLST--IVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 102 bits (255), Expect = 1e-26
Identities = 51/219 (23%), Positives = 85/219 (38%), Gaps = 33/219 (15%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 68
G ++ ++G +GAGKSTLLA ++ G I+ G+P+E K ++ Q
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQ 80
Query: 69 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 128
+ V+ +L K R L+N + L L +
Sbjct: 81 QTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRSTNQ------- 125
Query: 129 VLSGGERKRLSFATELL-------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 181
LSGGE +R+ A +L LLL DEP LD S L +++ L Q+
Sbjct: 126 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC-QQGL 183
Query: 182 TVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220
++ + H + + + LL + G ++ L
Sbjct: 184 AIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (252), Expect = 2e-26
Identities = 40/193 (20%), Positives = 83/193 (43%), Gaps = 23/193 (11%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
G +V G +G GK+TLL +S L +I NG P+ K + F+ + +
Sbjct: 26 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKG---EIIYNGVPIT-KVKGKIFFLPEEIIV 81
Query: 72 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 131
++V ++L +A L + K I L + +++ + ++G LS
Sbjct: 82 PRKISVEDYLKAVASLYGVKVNKNE-----IMDALESVEVLDLKK-KLG--------ELS 127
Query: 132 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 191
G +R+ A+ LL + + + D+P +D S K+++ + E+ ++ ++ + +
Sbjct: 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-- 185
Query: 192 SELIDMFDKIILL 204
+ D L
Sbjct: 186 ---LSYCDVNENL 195
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 101 bits (252), Expect = 3e-26
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 17/206 (8%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDL 70
G V +G SG GKSTLL ++ D+ + K + G ++Q
Sbjct: 26 GEFVVFVGPSGCGKSTLLRMIAGLETITSG---DLFIGEKRMNDTPPAERGVGMVFQSYA 82
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
P L+V E++ F L ++ QR+ N + L L + + + L
Sbjct: 83 LYPHLSVAENMSFGLKLAGAKKEVINQRV---NQVAEVLQLAHLLDRKPKA--------L 131
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGG+R+R++ L+ +P++ L DEP + LD+ ++ + L + +T++ H
Sbjct: 132 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 191
Query: 191 SSELIDMFDKIILLADSRTAFIGSKD 216
E + + DKI++L R A +G
Sbjct: 192 -VEAMTLADKIVVLDAGRVAQVGKPL 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 94.2 bits (234), Expect = 1e-23
Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 23/212 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSA--------CGF 64
G + ++G SG GK+T L ++ I + K V +
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRG---QIYIGDKLVADPEKGIFVPPKDRDIAM 85
Query: 65 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 124
++Q P +TVY+++ F L R+V + + + LGL + +
Sbjct: 86 VFQSYALYPHMTVYDNIAFPLKL---RKVPRQEIDQRVREVAELLGLTELLNRKPRE--- 139
Query: 125 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 184
LSGG+R+R++ ++ P + L DEP + LD+ ++ +++L Q T +
Sbjct: 140 -----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 185 CTIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
H E + M D+I ++ +GS D
Sbjct: 195 YVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 86.3 bits (213), Expect = 1e-20
Identities = 45/211 (21%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSAC-------GFM 65
G I+G SGAGK+T + ++ G++ + + V + G +
Sbjct: 31 GERFGILGPSGAGKTTFMRIIAGLDVPST---GELYFDDRLVASNGKLIVPPEDRKIGMV 87
Query: 66 YQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 125
+Q P+LT +E++ F + + +R+ + L + + +
Sbjct: 88 FQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV---EEVAKILDIHHVLNHFPRE---- 140
Query: 126 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 185
LSG +++R++ A L+ DP+LLL DEP + LD+ +++E+ S+ T+L
Sbjct: 141 ----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196
Query: 186 TIHQPSSELIDMFDKIILLADSRTAFIGSKD 216
H P +++ + D++ +L + +G +
Sbjct: 197 VSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 85.9 bits (212), Expect = 1e-20
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 20/206 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKF--RSACGFMYQHDL 70
G I+G +GAGK+ L ++ D I ++GK V + F+YQ+
Sbjct: 26 GEYFVILGPTGAGKTLFLELIAGFHVPDSG---RILLDGKDVTDLSPEKHDIAFVYQNYS 82
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
P + V ++L F +K + K + +L + + + L
Sbjct: 83 LFPHMNVKKNLEFGMRMKKIKDPKR------VLDTARDLKIEHLLDRNPLT--------L 128
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGGE++R++ A L+T+P +LL DEP + LD + M+ L + K TVL H
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 191 SSELIDMFDKIILLADSRTAFIGSKD 216
+E M D+I ++ D + +G +
Sbjct: 189 -TEARIMADRIAVVMDGKLIQVGKPE 213
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 79.7 bits (196), Expect = 3e-18
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 19/206 (9%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE--GKFRSACGFMYQHDL 70
++G +GAGKS L ++ + D G++R+NG + R GF+ Q
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYA 80
Query: 71 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 130
P L+VY ++ + R V+ +R + + +LG+ + + L
Sbjct: 81 LFPHLSVYRNIAYG-----LRNVERVERDRRVREMAEKLGIAHLLDRKPAR--------L 127
Query: 131 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 190
SGGER+R++ A L+ P LLL DEP + +D + L+ +R + + +L H
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 191 SSELIDMFDKIILLADSRTAFIGSKD 216
E + D++ ++ + R G
Sbjct: 188 -IEAAMLADEVAVMLNGRIVEKGKLK 212
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 57.7 bits (138), Expect = 8e-11
Identities = 19/201 (9%), Positives = 50/201 (24%), Gaps = 39/201 (19%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
+ I G G GK+TL+ + +RL + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIF 59
Query: 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 135
+ + V+ ++
Sbjct: 60 SSKFFTSKKLVGSYGVNVQYFE--------------------------------ELAIPI 87
Query: 136 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 195
++ +++ DE K ++R++ V+ TI ++
Sbjct: 88 LERAYREAKKDRRKVIIIDEIGKMELFS--KKFRDLVRQIMHDPNVNVVATIPIR--DVH 143
Query: 196 DMFDKIILLADSRTAFIGSKD 216
+ +I L + + ++
Sbjct: 144 PLVKEIRRLPGAVLIELTPEN 164
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 45.7 bits (107), Expect = 1e-06
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCI-IDGDI 47
L G ++ + G G+GKST+ AL+ + D
Sbjct: 2 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 39
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 43.9 bits (102), Expect = 5e-06
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDI 47
L I G +G GKST L+ +L + I+GDI
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDI 36
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.4 bits (101), Expect = 6e-06
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G +V + G S GKST++ L +R+P+ +P E
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRF 58
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 41.0 bits (95), Expect = 5e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCI 42
GTL + SGAGKS+L+ AL + P
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDT 31
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.6 bits (96), Expect = 6e-05
Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 138 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 197
L FA + DE LD + ++ +R + + + + + +
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQ-FIVISLKN--TMFEK 401
Query: 198 FDKII 202
D ++
Sbjct: 402 SDALV 406
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 39.2 bits (90), Expect = 2e-04
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCI-IDGDIRVNGKP 53
++ ++ + G S AGKS ++ L LP+ + D + P
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMP 44
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.8 bits (89), Expect = 3e-04
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD 40
V + G SGAGKSTLL L Q
Sbjct: 2 PVVLSGPSGAGKSTLLKKLFQEHSSI 27
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (87), Expect = 4e-04
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDD 40
+ I G SG GKSTLL L PD
Sbjct: 3 PIVISGPSGTGKSTLLKKLFAEYPDS 28
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Score = 37.7 bits (86), Expect = 6e-04
Identities = 8/57 (14%), Positives = 20/57 (35%)
Query: 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
G + I G G GK+++ ++ L ++ V ++ + +
Sbjct: 5 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEE 61
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 7e-04
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPD 39
+ ++GA G G+ + L + PD
Sbjct: 5 TLVLLGAHGVGRRHIKNTLITKHPD 29
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 37.3 bits (85), Expect = 8e-04
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR 48
+ +MG SG+GKS + + ++ +L + +
Sbjct: 5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH 41
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Score = 36.8 bits (85), Expect = 0.001
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 10 ALSGTLVAIMGASGAGKSTLLAALSQR----LPDDCI----IDGDIRVNGKP 53
+ G V I G SG GKS L +R + DD + I D + P
Sbjct: 12 DVYGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDELIGRAP 63
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Score = 37.6 bits (86), Expect = 0.001
Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGD----IRVNGKPVEGKFR 59
L LT V + G G GKST + AL+ LP+ ++G V P
Sbjct: 19 LLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVL 78
Query: 60 SACGFMYQHDLFSPSLTVYEH 80
S + L V E
Sbjct: 79 STNVIRKPTPVVDLPLGVSED 99
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 36.6 bits (83), Expect = 0.001
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLF 71
SG VAI+G GKSTLL L I + K + G + D
Sbjct: 5 SGF-VAIVGKPNVGKSTLLNNLLGV--KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTP 61
Query: 72 SPSLTVYEHLYFM 84
+ FM
Sbjct: 62 GLHKPMDALGEFM 74
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 36.6 bits (83), Expect = 0.002
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSL 75
+AI+G GKSTLL L + I + + G D +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ--KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 65
Query: 76 TVYEHLYFM 84
+ +
Sbjct: 66 EEKRAINRL 74
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 36.5 bits (83), Expect = 0.002
Identities = 13/85 (15%), Positives = 26/85 (30%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPS 74
V I G G+GK+T L + D C++ + +
Sbjct: 11 TVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQ 70
Query: 75 LTVYEHLYFMALLKLDRRVKAYQRI 99
V + ++++K +R
Sbjct: 71 SYVTLTMLQSHTAPTNKKLKIMERS 95
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 36.7 bits (83), Expect = 0.002
Identities = 17/70 (24%), Positives = 28/70 (40%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPS 74
++ I G S +GK+TL LSQ L + I ++ VE R G + +
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQ 83
Query: 75 LTVYEHLYFM 84
V + +
Sbjct: 84 WDVEWLTHQL 93
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Score = 35.9 bits (81), Expect = 0.002
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 15 LVAIMGASGAGKSTLLAALSQRLPDDCIID 44
++ +G G+GKST + P I+
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPGFYNIN 33
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Score = 36.2 bits (82), Expect = 0.002
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 16 VAIMGASGAGKSTLLAALSQRLPDDCI 42
VAI+G +GKS L+ L+
Sbjct: 10 VAILGGESSGKSVLVNKLAAVFNTTSA 36
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.7 bits (81), Expect = 0.003
Identities = 17/145 (11%), Positives = 36/145 (24%), Gaps = 5/145 (3%)
Query: 14 TLVAIMGASGAGKSTLLAALSQRLP----DDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 69
TL+ ++G GK+ + L++ L + K +
Sbjct: 3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEG 62
Query: 70 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 129
L L L N+ ++ + + G + + +
Sbjct: 63 LKIRKQCALAALN-DVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121
Query: 130 LSGGERKRLSFATELLTDPALLLCD 154
E + L P + D
Sbjct: 122 CVDPEVIAANIVQVKLGSPDYVNRD 146
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 35.1 bits (79), Expect = 0.004
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
V I+G GKSTL L ++
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKK 23
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 35.1 bits (79), Expect = 0.004
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 16 VAIMGASGAGKSTLLAALSQR 36
V I G AGKS+LL AL+ R
Sbjct: 4 VVIAGRPNAGKSSLLNALAGR 24
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 290 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.9 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.76 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.42 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.3 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.13 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.55 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.5 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.48 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.95 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.94 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.92 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.84 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.76 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.75 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.73 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.62 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.62 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.59 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.55 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.52 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.5 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.49 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.46 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.45 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.39 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.39 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.37 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.36 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.33 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.3 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.28 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.27 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.24 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.23 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.21 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.18 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.16 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.09 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 97.09 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 97.07 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 97.06 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 97.04 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.01 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 97.01 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.01 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.0 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.0 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.98 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.96 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.95 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.94 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.94 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.93 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.91 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.89 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.88 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.88 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.87 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.85 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.82 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.79 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.78 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.78 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.72 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.7 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.69 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.69 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.68 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.67 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.67 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.66 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.63 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.61 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.58 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.57 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.56 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.55 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.55 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.54 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.53 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.51 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.49 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.49 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.48 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.46 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.4 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.4 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.37 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.37 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.37 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.32 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.31 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.31 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.28 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.27 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.25 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.25 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 96.25 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.24 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.21 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.21 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.19 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.18 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.17 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.16 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.15 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.14 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.14 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 96.12 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.12 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.12 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 96.11 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.11 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.07 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.06 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.05 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.04 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.01 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.96 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.96 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.96 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.93 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.93 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.92 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.92 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.86 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.83 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.83 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.83 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.8 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.8 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.78 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.74 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.71 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.69 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.68 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.68 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.68 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.67 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.67 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.66 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.65 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.64 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.63 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.61 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.6 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.59 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.56 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.52 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.52 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.47 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.47 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.44 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.43 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.43 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.41 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.41 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.39 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.39 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.38 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.37 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.37 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.37 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.32 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.3 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 95.3 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.29 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.25 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.21 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 95.2 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.17 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.17 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.16 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.13 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.12 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.09 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.07 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.04 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 95.04 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.96 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.95 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 94.9 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.9 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.87 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.85 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.85 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 94.83 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.82 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.76 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.69 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.61 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.37 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.21 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 94.14 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.05 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.04 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.95 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.93 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 93.83 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.75 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.71 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.68 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.57 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.46 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.18 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 93.14 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.87 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.85 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.85 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.73 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.58 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.25 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.71 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.34 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 91.1 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 90.71 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 90.62 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.61 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 90.43 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 90.38 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 90.09 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.04 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 89.97 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 89.52 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 89.32 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 89.15 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.96 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 88.66 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 88.58 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 88.54 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 88.02 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 87.92 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 87.64 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 87.51 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 87.28 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 86.99 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 86.95 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 86.75 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 86.44 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 86.39 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 86.13 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 85.43 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.28 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 84.08 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 83.11 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 81.89 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 81.27 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 80.44 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.4e-60 Score=419.86 Aligned_cols=201 Identities=23% Similarity=0.320 Sum_probs=177.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.||||||++.+|+.+||+||+
T Consensus 23 ~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl 99 (239)
T d1v43a3 23 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENI 99 (239)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHH
T ss_pred cceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEeechhhcccchHHHHH
Confidence 4899999999999999999999999999999999994 8999999999865 3567899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+. .+..+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 100 ~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~--------~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD 168 (239)
T d1v43a3 100 AFPLKIKK---FPKDEIDKRVRWAAELLQIEELLNRY--------PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 168 (239)
T ss_dssp HTTCC--C---CCHHHHHHHHHHHHHHTTCGGGTTSC--------TTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred HHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhcCC--------hhhCCHHHHHHHHHHhhhccCCCceeecCCcccCC
Confidence 98765543 34455667789999999999999998 66699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|.++.+++++|++++++.|+|||+||||+ .++.++|||+++|++|++++.|++++++
T Consensus 169 ~~~~~~i~~ll~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 169 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVY 225 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999666799999999997 5899999999999999999999999875
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-60 Score=419.09 Aligned_cols=202 Identities=25% Similarity=0.366 Sum_probs=148.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. ..++.||||||++.+++.+||+||+
T Consensus 17 ~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni 93 (232)
T d2awna2 17 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENM 93 (232)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC----------
T ss_pred eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhceeeeeccccccccchhHHHHH
Confidence 4899999999999999999999999999999999994 8999999999865 3567899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+.. +..+..+++.++++.++|.+..+++ +.+|||||||||+|||||+++|++|||||||+|||
T Consensus 94 ~~~~~~~~~---~~~~~~~~v~~~l~~~~l~~~~~~~--------~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD 162 (232)
T d2awna2 94 SFGLKLAGA---KKEVINQRVNQVAEVLQLAHLLDRK--------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 162 (232)
T ss_dssp --------------CHHHHHHHHHHHHC-----------------------------CHHHHHHTCCSEEEEESTTTTSC
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHhCCChhhhhCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 998765432 2334556789999999999999999 55699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|.++.++++.|+++.++.|+|||++|||+ .++..+|||+++|++|+++..|++++++.
T Consensus 163 ~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 163 AALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999777799999999997 58999999999999999999999998763
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6.7e-60 Score=415.94 Aligned_cols=201 Identities=23% Similarity=0.360 Sum_probs=183.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--------cccccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~ig~v~Q~~~~~~~l 75 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.||||||++.++|.+
T Consensus 20 ~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~l 96 (240)
T d1g2912 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM 96 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTS
T ss_pred cceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhcccccccceecccchhhcchh
Confidence 4899999999999999999999999999999999994 8999999999843 1257899999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeC
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 155 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDE 155 (290)
||+||+.|+...+.. +..+..+++.++++.++|.+..+++ +.+|||||||||+|||||+++|++|||||
T Consensus 97 tV~eni~~~~~~~~~---~~~e~~~~v~~~l~~~~l~~~~~~~--------p~~LSGGqkQRv~IAraL~~~P~iLllDE 165 (240)
T d1g2912 97 TVYDNIAFPLKLRKV---PRQEIDQRVREVAELLGLTELLNRK--------PRELSGGQRQRVALGRAIVRKPQVFLMDE 165 (240)
T ss_dssp CHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHTCGGGTTCC--------GGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred hhhHhhhhhHHHcCC---CHHHHHHHHHHHHHHcCChhHhcCC--------hhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 999999999877643 3455667899999999999999998 45599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 156 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 156 PtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
||+|||+.++..+++.|++++++.|+|||++|||+ .++..+||||++|++|++++.|++++++
T Consensus 166 Pt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~-~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 166 PLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999666699999999997 5899999999999999999999999876
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.8e-60 Score=419.57 Aligned_cols=202 Identities=22% Similarity=0.338 Sum_probs=183.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..+++||||||++.+||.+|
T Consensus 22 ~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~lt 98 (242)
T d1oxxk2 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLT 98 (242)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSC
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccceEEecccccccccc
Confidence 4899999999999999999999999999999999994 8999999999853 24678999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.|++..+. .+..+..+++.++++.+||.+..+++ +.+|||||||||+|||||+++|++||||||
T Consensus 99 v~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~--------p~~LSGGqkQRvaiARaL~~~P~llllDEP 167 (242)
T d1oxxk2 99 AFENIAFPLTNMK---MSKEEIRKRVEEVAKILDIHHVLNHF--------PRELSGAQQQRVALARALVKDPSLLLLDEP 167 (242)
T ss_dssp HHHHHHGGGTTSS---CCHHHHHHHHHHHHHHTTCGGGTTSC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHhhhhhHhhc---CCHHHHHHHHHHHHhhcChHhhhhCC--------hhhCCHHHHhHHHHHhHHhhcccceeecCC
Confidence 9999999876543 34455667899999999999999999 455999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|+|||+.++.++++.|++++++.|.|||++|||+ .++.++|||+++|++|++++.|++++++.
T Consensus 168 t~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 168 FSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp TTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999766799999999997 58999999999999999999999998763
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=8e-60 Score=412.51 Aligned_cols=198 Identities=28% Similarity=0.399 Sum_probs=181.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHL 81 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l 81 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.||||||++.+||.+||+||+
T Consensus 17 ~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl 93 (229)
T d3d31a2 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNL 93 (229)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHH
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeeccccccCccccHHHHH
Confidence 4899999999999999999999999999999999994 8999999999965 2467899999999999999999999
Q ss_pred HHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCC
Q psy2520 82 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD 161 (290)
.|+...+.... .+++.++++.+++.+..+++ +.+|||||||||+|||||+++|++|||||||+|||
T Consensus 94 ~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~--------~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD 159 (229)
T d3d31a2 94 EFGMRMKKIKD------PKRVLDTARDLKIEHLLDRN--------PLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159 (229)
T ss_dssp HHHHHHHCCCC------HHHHHHHHHHTTCTTTTTSC--------GGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSC
T ss_pred HHHHhhccccH------HHHHHHHHHHhcchhhHhCC--------hhhCCHHHhcchhhhhhhhccCCceeecCCCcCCC
Confidence 99887654221 24578899999999999998 45599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 162 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 162 ~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|.++.+++++|++++++.|.|||++|||+ .++..+||||++|++|++++.|++++++
T Consensus 160 ~~~~~~i~~~l~~l~~~~g~tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 160 PRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999777799999999997 5899999999999999999999999875
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-60 Score=417.37 Aligned_cols=201 Identities=23% Similarity=0.390 Sum_probs=182.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cccccEEEEccCCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLT 76 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~ig~v~Q~~~~~~~lT 76 (290)
.||||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. .+|+.||||||++.+++.+|
T Consensus 22 ~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~t 98 (240)
T d3dhwc1 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 98 (240)
T ss_dssp EEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSB
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhccccccccccccCCCcc
Confidence 4899999999999999999999999999999999994 8999999999853 24578999999999999999
Q ss_pred HHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Q psy2520 77 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 156 (290)
Q Consensus 77 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEP 156 (290)
|+||+.|++..+.. +..+..+++.++|+.+||.+..+++ +.+|||||||||+|||||+.+|++||||||
T Consensus 99 v~eni~~~l~~~~~---~~~~~~~~v~~~L~~vgL~~~~~~~--------~~~LSGG~~QRvaiAraL~~~P~lLllDEP 167 (240)
T d3dhwc1 99 VFGNVALPLELDNT---PKDEVKRRVTELLSLVGLGDKHDSY--------PSNLSGGQKQRVAIARALASNPKVLLCDEA 167 (240)
T ss_dssp HHHHHHHHHHTTTC---CTTHHHHHHHHHHHHHSTTTTTSSC--------BSCCCHHHHHHHHHHHHHHTCCSEEEEESG
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchhhhCC--------hhhCCHHHHHHHHHhhhhccCCCeEEeccc
Confidence 99999998876543 2334556789999999999999998 555999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 157 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 157 tsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|+|||+.++.++++.|++++++.|+|||++|||+ .++..+|||+++|++|++++.|++++++
T Consensus 168 t~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl-~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 168 TSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp GGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCH-HHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred cccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999766799999999997 5889999999999999999999999764
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.8e-59 Score=408.29 Aligned_cols=199 Identities=26% Similarity=0.390 Sum_probs=177.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-------cc-cccEEEEccCCCCCCCC
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-------KF-RSACGFMYQHDLFSPSL 75 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-------~~-~~~ig~v~Q~~~~~~~l 75 (290)
.||||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.. .+ +++||||||++.++|.+
T Consensus 22 ~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~ 98 (230)
T d1l2ta_ 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL 98 (230)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred eceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCc
Confidence 5899999999999999999999999999999999994 8999999999864 12 35799999999999999
Q ss_pred CHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCC-ccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEe
Q psy2520 76 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 154 (290)
Q Consensus 76 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllD 154 (290)
||+||+.++...+.....+..++.+++.++|+.++|.+ .++++ +.+|||||||||+|||||+++|++||||
T Consensus 99 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------p~~LSGGqkQRvaIAraL~~~P~lLllD 170 (230)
T d1l2ta_ 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK--------PNQLSGGQQQRVAIARALANNPPIILAD 170 (230)
T ss_dssp CHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC--------GGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCC--------hhhCCHHHHHHHHHHhhhhcCCCEEEec
Confidence 99999999887654444455666778899999999976 57877 4559999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCH
Q psy2520 155 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 215 (290)
Q Consensus 155 EPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~ 215 (290)
|||++||+.++..++++|++++++.|+|||++|||+ ++ .++|||+++|++|+|+.+|++
T Consensus 171 EPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~-a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 171 QPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NV-ARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HH-HTTSSEEEEEETTEEEEEEEC
T ss_pred CCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH-HH-HHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999777799999999997 44 589999999999999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=9.2e-59 Score=407.82 Aligned_cols=197 Identities=25% Similarity=0.390 Sum_probs=178.7
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc--cccccEEEEccCCCCCCCCCHHHHHH
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLY 82 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ig~v~Q~~~~~~~lTv~e~l~ 82 (290)
||||++. +|+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ..++.||||||++.++|.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 7888885 6899999999999999999999999994 8999999999975 35678999999999999999999999
Q ss_pred HHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCH
Q psy2520 83 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 162 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~ 162 (290)
|+... ....+..+++.++++.+||.+..+++ +.+|||||||||+|||||+.+|++|||||||+||||
T Consensus 93 ~~l~~-----~~~~~~~~~v~~~l~~~gl~~~~~~~--------~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~ 159 (240)
T d2onka1 93 YGLRN-----VERVERDRRVREMAEKLGIAHLLDRK--------PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDL 159 (240)
T ss_dssp TTCTT-----SCHHHHHHHHHHHHHTTTCTTTTTCC--------GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCH
T ss_pred hhhcc-----cCHHHHHHHHHHHHHhcCcHhhhhCC--------hhhCCHHHHHHHHHHHHHhccCCceEecCccccCCH
Confidence 87421 23344556789999999999999999 555999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 163 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 163 ~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.++..+++.|++++++.|.|||++|||+ .++..+|||+++|++|++++.|++++++
T Consensus 160 ~~~~~i~~~i~~l~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~ 215 (240)
T d2onka1 160 KTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHHHh
Confidence 9999999999999766799999999997 5899999999999999999999999875
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.1e-56 Score=398.57 Aligned_cols=201 Identities=26% Similarity=0.396 Sum_probs=178.1
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc-----------------cccccEEEEc
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG-----------------KFRSACGFMY 66 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~-----------------~~~~~ig~v~ 66 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. .++++|||||
T Consensus 19 ~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vf 95 (258)
T d1b0ua_ 19 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVF 95 (258)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEEC
T ss_pred cceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEE
Confidence 4899999999999999999999999999999999994 8999999999842 1456799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCc-cCcccCCcCCCCCCCCChHHHHHHHHHHHHH
Q psy2520 67 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELL 145 (290)
Q Consensus 67 Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~ 145 (290)
|++.+++.+||+||+.++...... ....+..+++.++++.++|.+. .++. +.+|||||||||+|||||+
T Consensus 96 Q~~~l~~~~tv~env~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~--------p~~LSGG~~QRv~iAraL~ 165 (258)
T d1b0ua_ 96 QHFNLWSHMTVLENVMEAPIQVLG--LSKHDARERALKYLAKVGIDERAQGKY--------PVHLSGGQQQRVSIARALA 165 (258)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHTTCCHHHHTSC--------GGGSCHHHHHHHHHHHHHH
T ss_pred echhhccchhcchhhhhhHHHhcC--CCHHHHHHHHHHHHHHcCCchhhhccC--------cccccHHHHHHHHHHHHHh
Confidence 999999999999999987533221 2344556778899999999774 4666 4559999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
.+|++|||||||+|||+.++.+++++|+++++ +|+|||+||||+ .++..+||||++|++|++++.|++++++
T Consensus 166 ~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vtHdl-~~~~~~adri~vm~~G~iv~~g~~~ev~ 237 (258)
T d1b0ua_ 166 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQVF 237 (258)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cCCceEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999954 599999999997 5899999999999999999999999875
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.7e-56 Score=390.66 Aligned_cols=201 Identities=23% Similarity=0.327 Sum_probs=182.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc---cccccEEEEccCCCCCCCCCHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEH 80 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~---~~~~~ig~v~Q~~~~~~~lTv~e~ 80 (290)
.||||++++||++||+||||||||||+++|+|+++|+ +|+|.++|+++.. ..++.+||+||++.+++++||.||
T Consensus 19 ~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~ 95 (238)
T d1vpla_ 19 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEY 95 (238)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred ccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHH
Confidence 5899999999999999999999999999999999994 8999999999865 357889999999999999999999
Q ss_pred HHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCC
Q psy2520 81 LYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 160 (290)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgL 160 (290)
+.|...++.. ...+..+.++.+++.++|.+..++++ .+|||||||||+|||||+.+|++|||||||+||
T Consensus 96 l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lSgG~~qrv~iA~al~~~p~illLDEPt~gL 164 (238)
T d1vpla_ 96 LRFVAGFYAS---SSSEIEEMVERATEIAGLGEKIKDRV--------STYSKGMVRKLLIARALMVNPRLAILDEPTSGL 164 (238)
T ss_dssp HHHHHHHHCC---CHHHHHHHHHHHHHHHCCGGGGGSBG--------GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTC
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHhCCCHHHHhhhh--------hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCC
Confidence 9998766543 23344566788999999999999984 459999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 161 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 161 D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||.++.+++++|++++ +.|+|||++||++ .++..+||||++|++|++++.|+++++..
T Consensus 165 D~~~~~~i~~~i~~~~-~~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 165 DVLNAREVRKILKQAS-QEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp CHHHHHHHHHHHHHHH-HTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999995 4599999999997 58999999999999999999999998864
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.9e-56 Score=393.19 Aligned_cols=199 Identities=24% Similarity=0.359 Sum_probs=173.6
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCcc-----ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGK-----FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... .+..++|+||+..+|+.+||+
T Consensus 23 ~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~ 99 (240)
T d1ji0a_ 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVY 99 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHH
T ss_pred eeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHHHhcccccCcccccCCcccHH
Confidence 5899999999999999999999999999999999994 89999999998651 245699999999999999999
Q ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHc-CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCC
Q psy2520 79 EHLYFMALLKLDRRVKAYQRIALINSLLIEL-GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 157 (290)
Q Consensus 79 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPt 157 (290)
||+.++....... ....+.++++++.+ ++.+..++. +.+|||||||||+|||||+.+|++|||||||
T Consensus 100 en~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~--------~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt 167 (240)
T d1ji0a_ 100 ENLMMGAYNRKDK----EGIKRDLEWIFSLFPRLKERLKQL--------GGTLSGGEQQMLAIGRALMSRPKLLMMDEPS 167 (240)
T ss_dssp HHHHGGGTTCCCS----SHHHHHHHHHHHHCHHHHTTTTSB--------SSSSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHHHHhhChHHHHhCc--------hhhCCHHHHHHHHHHHHHHhCCCEeeecCCC
Confidence 9998876443221 12223345666665 677888888 4559999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 158 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 158 sgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
+||||.++.+++++|+++++ .|+|||++||++ .++.++|||+++|++|++++.|++++++
T Consensus 168 ~gLD~~~~~~i~~~i~~l~~-~g~til~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 168 LGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999954 599999999997 5899999999999999999999999875
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-55 Score=393.41 Aligned_cols=204 Identities=21% Similarity=0.310 Sum_probs=178.3
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----c-ccccEEEEccCCCCCCCCCHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVY 78 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~-~~~~ig~v~Q~~~~~~~lTv~ 78 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. . .+..|+|+||++.+++.+||+
T Consensus 21 ~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~ 97 (254)
T d1g6ha_ 21 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVL 97 (254)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHH
T ss_pred cceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeee
Confidence 4899999999999999999999999999999999994 8999999999864 1 345699999999999999999
Q ss_pred HHHHHHHHhcCc----------hhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCC
Q psy2520 79 EHLYFMALLKLD----------RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 148 (290)
Q Consensus 79 e~l~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p 148 (290)
||+.++...+.. .........+++.++++.+++.+..+++++ +|||||||||+|||||+.+|
T Consensus 98 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~Qrv~iAraL~~~P 169 (254)
T d1g6ha_ 98 ENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG--------ELSGGQMKLVEIGRALMTNP 169 (254)
T ss_dssp HHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG--------GSCHHHHHHHHHHHHHHTCC
T ss_pred eeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchh--------hCCcHHHHHHHHHHHHHhCc
Confidence 999886432211 011223344667889999999999998844 49999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
++|||||||+|||+.++.+++++|++++ ++|+|||++|||+. ++.++||||++|++|+++++|+++++..
T Consensus 170 ~llilDEPt~gLD~~~~~~i~~~i~~l~-~~g~til~vsHdl~-~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 170 KMIVMDEPIAGVAPGLAHDIFNHVLELK-AKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred CchhhcCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcHH-HHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence 9999999999999999999999999994 56999999999985 7899999999999999999999987654
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.1e-54 Score=380.25 Aligned_cols=205 Identities=23% Similarity=0.330 Sum_probs=167.2
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|++||++||+||||||||||+++|+|+++|. +|+|++||+++.. .+++.++||||++.+|+ .||+|
T Consensus 31 ~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~e 106 (251)
T d1jj7a_ 31 QGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQE 106 (251)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHH
T ss_pred eceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhccccccccC-cchhh
Confidence 5899999999999999999999999999999999994 8999999999865 36788999999998886 59999
Q ss_pred HHHHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.|+....... ............+.++ .+.+..++.++.. +.+|||||||||+|||||+.+|+||||||||+
T Consensus 107 ni~~g~~~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~----~~~LSGGqkQRvaiARal~~~p~ililDEpTs 180 (251)
T d1jj7a_ 107 NIAYGLTQKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA----GSQLSGGQRQAVALARALIRKPCVLILDDATS 180 (251)
T ss_dssp HHHCSCSSCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS----CSSSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHH--hccccchhhHhcc----CccCChhHceEEEEeeccccCCcEEEecCcCc
Confidence 999864322111 1111111112223333 3444455555542 56799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+||+.++.++++.|+++.++.|+|+|+|||++ . ..+.||||++|++|+|++.|+++++++
T Consensus 181 ~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l-~-~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHL-S-LVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp TCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH-H-HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH-H-HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999998655689999999997 3 457799999999999999999998764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.3e-53 Score=373.51 Aligned_cols=202 Identities=23% Similarity=0.356 Sum_probs=164.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|++||++||+||||||||||+++|+|+++|. +|+|.|||+++.. .+|+.||||||++.+|+ .||+|
T Consensus 20 ~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~e 95 (241)
T d2pmka1 20 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIID 95 (241)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhhhceEEEEecccccCC-ccccc
Confidence 4899999999999999999999999999999999994 8999999999864 47889999999998775 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHc-CCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIEL-GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.++...... .......+...+.+.+ .+....++.++.. +..|||||||||+|||||+.+|+|||||||||
T Consensus 96 Ni~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~----g~~LSGGq~QRvalARal~~~p~ililDEpts 168 (241)
T d2pmka1 96 NISLANPGMSV---EKVIYAAKLAGAHDFISELREGYNTIVGEQ----GAGLSGGQRQRIAIARALVNNPKILIFDEATS 168 (241)
T ss_dssp HHCTTSTTCCH---HHHHHHHHHHTCHHHHTTSTTGGGSBCSTT----TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCS
T ss_pred cccccCccccH---HHHHHHHHHHhhHHHHHhhhcchhhhcCCC----CCccCHHHHHHHhhhhhhhcccchhhhhCCcc
Confidence 99886422111 1111111111122222 2344556666653 56799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+||+.++..+++.|+++. + |+|+|+|||++. . .+.||||++|++|+|++.|++++++.
T Consensus 169 ~LD~~~~~~i~~~l~~l~-~-~~Tvi~itH~l~-~-~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 169 ALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLS-T-VKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp CCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGG-G-GTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHh-C-CCEEEEEECCHH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999984 3 799999999974 3 47899999999999999999998763
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.9e-53 Score=376.36 Aligned_cols=197 Identities=28% Similarity=0.413 Sum_probs=164.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||++++||++||+||||||||||+++|+|+++|+ +|+|.+||+++.. .+|++||||||++.+|+. ||+|
T Consensus 19 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~e 94 (242)
T d1mv5a_ 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRE 94 (242)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHH
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEEEccccccCCc-chhh
Confidence 4899999999999999999999999999999999994 8999999999864 478899999999998876 9999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCC-------CCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
|+.++..... ... .+.+.++..++ .+..++.+++. +..|||||||||+|||||+.+|+|||
T Consensus 95 Ni~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----g~~LSGGqkQRv~iARal~~~p~ili 162 (242)
T d1mv5a_ 95 NLTYGLEGDY----TDE----DLWQVLDLAFARSFVENMPDQLNTEVGER----GVKISGGQRQRLAIARAFLRNPKILM 162 (242)
T ss_dssp HTTSCTTSCS----CHH----HHHHHHHHHTCTTTTTSSTTGGGCEESTT----SBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred heeccccccc----chh----hHHHHHHHHHhhhhhccCcccccccccCC----CCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9987543211 111 11223333332 33455566653 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
||||||+||+.++..+++.|++++ + |+|+|++||++ .. ...||||++|++|++++.|++++++.
T Consensus 163 lDEpts~LD~~~~~~i~~~l~~l~-~-~~Tvi~itH~l-~~-~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 163 LDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRL-ST-IVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp EECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSH-HH-HHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred ecCCccccCHHHHHHHHHHHHHHc-C-CCEEEEEECCH-HH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999994 3 89999999997 34 46799999999999999999998764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.9e-52 Score=370.10 Aligned_cols=203 Identities=28% Similarity=0.419 Sum_probs=163.5
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|++||++||+||||||||||+++|+|+++|+ +|+|+++|+++.. .+++.|+||||++.+++ .|+++
T Consensus 32 ~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ 107 (253)
T d3b60a1 32 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVAN 107 (253)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHH
T ss_pred eceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhhhhheEEEEeeccccCC-cchhh
Confidence 4899999999999999999999999999999999994 8999999999865 47788999999988775 49999
Q ss_pred HHHHHHHhcCch-hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCC
Q psy2520 80 HLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 158 (290)
Q Consensus 80 ~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPts 158 (290)
|+.++....... ......+...+.+.++.+ .+..++.+++. +..|||||||||+|||||+.+|+|||||||||
T Consensus 108 n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l--~~gl~t~~~~~----~~~LSGGqkQRvaiARal~~~p~ililDEpts 181 (253)
T d3b60a1 108 NIAYARTEEYSREQIEEAARMAYAMDFINKM--DNGLDTIIGEN----GVLLSGGQRQRIAIARALLRDSPILILDEATS 181 (253)
T ss_dssp HHHTTTTSCCCHHHHHHHHHTTTCHHHHHHS--TTGGGSBCCTT----SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTS
T ss_pred hhhhcCcccCCHHHHHHHHHHHhHHHHHHhc--cccchhhhcCC----CCCcCHHHHHHHHHHHHHhcCCCEEEeccccc
Confidence 998863211110 011000111122333332 23345555543 56799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 159 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 159 gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
+||+.++..|++.|+++. + ++|+|+|||++. . ...||+|++|++|+|++.|+++++++
T Consensus 182 ~LD~~~~~~i~~~l~~l~-~-~~Tvi~itH~l~-~-~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 182 ALDTESERAIQAALDELQ-K-NRTSLVIAHRLS-T-IEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp SCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGG-G-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhc-c-CCEEEEEECCHH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999994 3 799999999974 3 47899999999999999999998764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=7.1e-52 Score=368.40 Aligned_cols=196 Identities=28% Similarity=0.395 Sum_probs=165.8
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|+++.. .+|+.|+||+|++.+|+ .||+|
T Consensus 35 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~e 110 (255)
T d2hyda1 35 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKE 110 (255)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHHH
T ss_pred eceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHHHhhheeeeeeccccCCC-CCHHH
Confidence 4899999999999999999999999999999999994 8999999999865 47889999999988775 59999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcC-------CCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~lll 152 (290)
||.|+.... .. +.+.++++..+ +.+..++.+++. ...|||||||||+|||||+++|++||
T Consensus 111 Ni~~g~~~~-----~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~~----g~~LSgGq~QRi~iARal~~~p~ili 177 (255)
T d2hyda1 111 NILLGRPTA-----TD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER----GVKLSGGQKQRLSIARIFLNNPPILI 177 (255)
T ss_dssp HHGGGCSSC-----CH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG----GTTSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHhccCcCC-----CH----HHHHHHHHHhCCHHHHHhccccccchhcCC----CCCcCHHHHHHHHHHHHHhcCCCEEE
Confidence 998863211 11 11233444443 344566677664 45699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
|||||++||+.+...+++.|+++ .+ ++|+|+|||++. ....||||++|++|+++..|+++++++
T Consensus 178 lDEpts~LD~~t~~~i~~~l~~l-~~-~~TvI~itH~~~--~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 178 LDEATSALDLESESIIQEALDVL-SK-DRTTLIVAHRLS--TITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHH-TT-TSEEEEECSSGG--GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EeCccccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999998 43 789999999974 457899999999999999999998764
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.7e-50 Score=352.44 Aligned_cols=194 Identities=27% Similarity=0.392 Sum_probs=169.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCc----cccccEEEEccCCCCCCCCCHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYE 79 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~----~~~~~ig~v~Q~~~~~~~lTv~e 79 (290)
.||||+|++||++||+||||||||||+++|+|+.+. +|+|.++|+++.. .++...+|++|+.......++++
T Consensus 16 ~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~----~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 91 (231)
T d1l7vc_ 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH 91 (231)
T ss_dssp CSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCC----SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHH
T ss_pred cCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC----ceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHH
Confidence 589999999999999999999999999999998643 7999999999854 24556899999877666779999
Q ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHh-------CCCeEE
Q psy2520 80 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT-------DPALLL 152 (290)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~-------~p~lll 152 (290)
++.+....+ .+.+.+.++++.+++.+..++++ ..|||||||||+|||||++ +|+|||
T Consensus 92 ~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~--------~~LSgG~~Qrv~iA~al~~~~p~~~p~p~lll 155 (231)
T d1l7vc_ 92 YLTLHQHDK--------TRTELLNDVAGALALDDKLGRST--------NQLSGGEWQRVRLAAVVLQITPQANPAGQLLL 155 (231)
T ss_dssp HHHHHCSCT--------TCHHHHHHHHHHTTCTTTTTSBG--------GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred Hhhhccchh--------hHHHHHHHHHHhcCCHhHhCcCh--------hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEE
Confidence 988753211 11245678899999999999884 4599999999999999997 779999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHH
Q psy2520 153 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 219 (290)
Q Consensus 153 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 219 (290)
|||||+|||+.++..+.++|++++ +.|+|||++|||+ +++.++|||+++|++|++++.|++++++
T Consensus 156 lDEPt~gLD~~~~~~i~~~i~~l~-~~g~tii~vtHdl-~~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 156 LDEPMNSLDVAQQSALDKILSALC-QQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp ESSCSTTCCHHHHHHHHHHHHHHH-HTTCEEEECCCCH-HHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999995 4699999999997 5899999999999999999999999875
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.2e-48 Score=348.28 Aligned_cols=194 Identities=24% Similarity=0.338 Sum_probs=153.9
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++| +++|++|++.+++. ||+||+.|
T Consensus 53 ~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g---------~i~~v~Q~~~l~~~-tv~eni~~ 119 (281)
T d1r0wa_ 53 KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG---------RVSFCSQFSWIMPG-TIKENIIF 119 (281)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS---------CEEEECSSCCCCSE-EHHHHHTT
T ss_pred eCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC---------EEEEEeccccccCc-eeeccccc
Confidence 4899999999999999999999999999999999994 89999988 39999999988875 99999987
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
+.... ........+.+........+.+..++.++.. ..+|||||||||+|||||+++|+||||||||++||+.
T Consensus 120 ~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~----~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~ 192 (281)
T d1r0wa_ 120 GVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLGEG----GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 192 (281)
T ss_dssp TSCCC---HHHHHHHHHHTTCHHHHTTSTTGGGCEECTT----CTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHH
T ss_pred ccccc---chHHHHHHHHHHhHHHHHhchhhhhhhhhhh----ccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHH
Confidence 64211 1111111111111122234455555555543 4569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEcCHHHHHH
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 220 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 220 (290)
++..+++.+... ...++|+|++||++ +..+.||||++|++|++++.|++++++.
T Consensus 193 ~~~~i~~~~~~~-~~~~~tvi~itH~~--~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 193 TEEQVFESCVCK-LMANKTRILVTSKM--EHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp HHHHHHHHCCCC-CTTTSEEEEECSCH--HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHH-hhCCCEEEEEechH--HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999998764333 23589999999996 3567899999999999999999998764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.5e-45 Score=316.97 Aligned_cols=180 Identities=22% Similarity=0.315 Sum_probs=152.0
Q ss_pred cceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccCCCCCCCCCHHHHHHH
Q psy2520 4 LELTGAALSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 83 (290)
Q Consensus 4 ~~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~~~~~~~lTv~e~l~~ 83 (290)
.||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+..++|+||+..++..+|+.+++.+
T Consensus 18 ~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~-~~~~i~~~~~~~~~~~~~t~~~~l~~ 93 (200)
T d1sgwa_ 18 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITK-VKGKIFFLPEEIIVPRKISVEDYLKA 93 (200)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGG-GGGGEEEECSSCCCCTTSBHHHHHHH
T ss_pred eceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhH-hcCcEEEEeecccCCCCcCHHHHHHH
Confidence 4899999999999999999999999999999999994 8999999999863 56789999999999999999999998
Q ss_pred HHHhcCchhhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHH
Q psy2520 84 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~ 163 (290)
....+... ... ..+.++++.+++.+. ++++ .+|||||||||+|||||+.+|+++||||||+|||+.
T Consensus 94 ~~~~~~~~-~~~----~~~~~~l~~~~~~~~-~~~~--------~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~ 159 (200)
T d1sgwa_ 94 VASLYGVK-VNK----NEIMDALESVEVLDL-KKKL--------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 159 (200)
T ss_dssp HHHHTTCC-CCH----HHHHHHHHHTTCCCT-TSBG--------GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred HHHhcCCc-cCH----HHHHHHHHHcCCccc-cccc--------CcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHH
Confidence 87665322 121 235677888887654 3443 449999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 164 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 164 ~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
++.++++.|.++.++.+.+||.++|++ .+||++.+|++
T Consensus 160 ~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 160 SKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp THHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 999999999998666666666666653 47999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.76 E-value=8e-21 Score=156.51 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=99.9
Q ss_pred EEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecCccccccEEEEccC----CCCCCCCCHHHHHHHHHHhcCch
Q psy2520 16 VAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVEGKFRSACGFMYQH----DLFSPSLTVYEHLYFMALLKLDR 91 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~~~~~~~ig~v~Q~----~~~~~~lTv~e~l~~~~~~~~~~ 91 (290)
++|+||||||||||+++|+|.+++. .|.+.+.+.+.... .++.++.... ...+...+......+ . +.
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~-- 73 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPET-KKRTGFRIITTEGKKKIFSSKFFTSKKLV-G--SY-- 73 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC-------CCEEEEEETTCCEEEEEETTCCCSSEE-T--TE--
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCC---cceEEECCcchHHH-HHhhhhhhhhhhHHHHHHhhhhhhhhhhh-h--hh--
Confidence 7999999999999999999999884 79999887664321 1112221110 000000000000000 0 00
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCccCcccCCcCCCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2520 92 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM 171 (290)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~l~~~~~~~v~~~~~~~~~~LSgGqrqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~ 171 (290)
... .. ...+|+|+++|.++++++..+|+++++|||.... .....+...
T Consensus 74 ~~~----------------------~~--------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~ 121 (178)
T d1ye8a1 74 GVN----------------------VQ--------YFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDL 121 (178)
T ss_dssp EEC----------------------HH--------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHH
T ss_pred hcC----------------------cc--------hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHH
Confidence 000 00 0127999999999999999999999999985443 334556666
Q ss_pred HHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeCCeEEEEc
Q psy2520 172 MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 213 (290)
Q Consensus 172 l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~G~i~~~g 213 (290)
+.++..+.+.++|+++|+. ....+++++..+.+|+++.-+
T Consensus 122 l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 122 VRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp HHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEEEECC
T ss_pred HHHHhccCCCEEEEEEccH--HHHHhhceEEEEeCCEEEEEC
Confidence 6665455689999999985 356789999999999987644
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=6e-11 Score=108.52 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=63.6
Q ss_pred CCCChHHHHHHHHHHHH----HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 128 VVLSGGERKRLSFATEL----LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 128 ~~LSgGqrqRv~ia~aL----~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
..||||||.++++|..+ ..++++++||||+++||+..+..+.++|+++ ...+.-+|++||+| .+...+|+++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~-~~~~~Q~I~iTH~~--~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRH-RNPDLQFIVISLKN--TMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHH-CBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hCCCCEEEEEeCCH--HHHHhcccEEE
Confidence 56899999998887655 3577899999999999999999999999998 44567799999996 58899999875
Q ss_pred E
Q psy2520 204 L 204 (290)
Q Consensus 204 l 204 (290)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.55 E-value=1.1e-07 Score=83.14 Aligned_cols=77 Identities=19% Similarity=0.386 Sum_probs=64.8
Q ss_pred CCCCChHHHHHHHHHHHH----HhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEE
Q psy2520 127 KVVLSGGERKRLSFATEL----LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 202 (290)
Q Consensus 127 ~~~LSgGqrqRv~ia~aL----~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~ 202 (290)
...+|+|||+...++..+ ...|.++++|||-++|+|.....+.+.|+..+ + +.-||++||.| .+.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~-~-~~QviitTHsp--~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNK--IVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCT--TGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhc-c-CCEEEEEECCH--HHHHhcccEE
Confidence 456999999998887765 35789999999999999999999999999983 3 57899999997 3678999986
Q ss_pred E--EeCC
Q psy2520 203 L--LADS 207 (290)
Q Consensus 203 ~--l~~G 207 (290)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 5566
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=3.5e-07 Score=78.03 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=35.1
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEeCCC
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQP 190 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~-~~l~~l~~~~g~tii~~tH~~ 190 (290)
.+..++|+||+..|=++.....+. .++..+..+.+..+|++||..
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 345699999999999999998875 456667555567889999874
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.48 E-value=1.2e-06 Score=74.12 Aligned_cols=50 Identities=26% Similarity=0.333 Sum_probs=36.7
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEeCCCcHHHHhhc
Q psy2520 146 TDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMF 198 (290)
Q Consensus 146 ~~p~llllDEPtsgLD~~~~~~i~-~~l~~l~~~~g~tii~~tH~~~~~~~~~~ 198 (290)
.+..++|+||+..|=++.....+. .++..+ .+.+..++++||.. ++..+.
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L-~~~~~~~i~tTH~~--eL~~l~ 163 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEAL-HERRAYTLFATHYF--ELTALG 163 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHH-HHHTCEEEEECCCH--HHHTCC
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHH-hhcCcceEEeeech--hhhhhh
Confidence 355699999999999998877654 444445 44578899999974 565543
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=2e-05 Score=67.13 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=36.6
Q ss_pred HHHHhCCCeEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCC
Q psy2520 142 TELLTDPALLLCDEPTT-----GLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189 (290)
Q Consensus 142 ~aL~~~p~llllDEPts-----gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~ 189 (290)
...+.+|+++++|--++ --|......++..|+.++.+.|++||++.|-
T Consensus 127 ~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 127 KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 34467999999996543 2266677788888988877778999999885
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.94 E-value=2.8e-05 Score=66.48 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=30.7
Q ss_pred HhCCCeEEEeCCC-----CC--CCHHHHHHHHHHHHHHHhcCCcEEEEEeCC
Q psy2520 145 LTDPALLLCDEPT-----TG--LDSFSASKLIRMMRELTSQRKKTVLCTIHQ 189 (290)
Q Consensus 145 ~~~p~llllDEPt-----sg--LD~~~~~~i~~~l~~l~~~~g~tii~~tH~ 189 (290)
-.+|+++++|=-+ .+ -+......++..|+.++++.+.+||+++|-
T Consensus 145 ~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 145 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp TTCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ccCcceEEEcccccccccccccchhHHHHHHHHHHHHHhhhccccceeeccc
Confidence 3579999998431 11 112334567888999988889999999884
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=3.1e-07 Score=73.90 Aligned_cols=31 Identities=32% Similarity=0.296 Sum_probs=25.7
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 5 ELTGAALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 5 ~is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+.++.+.+| +++|+|||||||||+|.+|.-.
T Consensus 17 ~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 17 ARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred eEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 456667666 9999999999999999998743
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.76 E-value=1.2e-05 Score=63.44 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.|++++|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999997653
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.75 E-value=5.8e-06 Score=66.81 Aligned_cols=26 Identities=42% Similarity=0.787 Sum_probs=23.7
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
|.+++|+||||||||||.+.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.73 E-value=7.3e-06 Score=64.35 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
+++|+|++|||||||++.|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999986543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.62 E-value=1.5e-05 Score=67.23 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEE
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR 48 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~ 48 (290)
+|+.++++|+||+|||||+|.|.|-..-. .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 68999999999999999999999865432 46664
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=1.4e-05 Score=63.00 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999764
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.59 E-value=0.00035 Score=57.93 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=42.2
Q ss_pred hCCCeEEEeCCCC---CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc---------HHHHhhcCeEEEEe
Q psy2520 146 TDPALLLCDEPTT---GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS---------SELIDMFDKIILLA 205 (290)
Q Consensus 146 ~~p~llllDEPts---gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~---------~~~~~~~d~v~~l~ 205 (290)
.+|+++++|--++ +.+......++..|.+++++.+.+++++.|-.. ..+..++|-++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 5799999986543 456766677777777776777899998887420 12456789888875
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.55 E-value=1.2e-05 Score=63.78 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.2
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.+++|+|++|||||||++.|...+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999988776554
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.52 E-value=2.2e-05 Score=61.71 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=24.3
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+|-++.|+|++||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999665
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.50 E-value=1.9e-05 Score=68.35 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=23.3
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+.+.++ +++|+|||||||||+|++|+-.
T Consensus 20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~~~ 47 (308)
T d1e69a_ 20 IGFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (308)
T ss_dssp EECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred EeCCCC-eEEEECCCCCcHHHHHHHHHHH
Confidence 455555 9999999999999999999644
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.49 E-value=2.5e-05 Score=70.07 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=23.5
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~ 34 (290)
.+.+.++.+++|+|||||||||+|.+|+
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3556555699999999999999999984
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.46 E-value=3.1e-05 Score=61.01 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.6
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
..++|+||+|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999764
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=2.4e-05 Score=61.65 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.+.|+||+|+|||||++.++..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5889999999999999999988754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=4.1e-05 Score=63.36 Aligned_cols=27 Identities=48% Similarity=0.701 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.|.++.|+||||||||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999999886544
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.39 E-value=3.6e-05 Score=60.32 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=23.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998765
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.37 E-value=1.7e-05 Score=67.09 Aligned_cols=34 Identities=35% Similarity=0.457 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEE
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIR 48 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~ 48 (290)
+|..++++|+||+|||||+|.|.|-..- ..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~---~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHh---hhcccc
Confidence 5789999999999999999999986443 246664
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.36 E-value=4.9e-05 Score=58.55 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=24.3
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCE
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGK 52 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~ 52 (290)
+++.|.||+|||||||.+.|..-. .|.+.++.-
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~------~~~~~~~~d 35 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN------PGFYNINRD 35 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS------TTEEEECHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC------CCCEEechH
Confidence 578899999999999999775421 255655543
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.33 E-value=5.8e-05 Score=59.25 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|-.++|+||+||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 356779999999999999999999754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.30 E-value=6e-05 Score=58.71 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=22.0
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.++.|.||+||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997653
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.28 E-value=5.4e-05 Score=60.54 Aligned_cols=24 Identities=46% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
++||-||+|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986544
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.27 E-value=6.8e-05 Score=59.13 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.+++|.|++||||||+.+.|+-.+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999876543
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=6.9e-05 Score=57.60 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999764
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.23 E-value=6.9e-05 Score=58.54 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998643
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=6.2e-05 Score=60.20 Aligned_cols=26 Identities=46% Similarity=0.597 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999998654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.18 E-value=7.4e-05 Score=60.40 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|+|||||+|.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 39999999999999999999853
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.16 E-value=9.4e-05 Score=61.29 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+++|+||.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.09 E-value=0.00012 Score=59.17 Aligned_cols=23 Identities=52% Similarity=0.765 Sum_probs=20.2
Q ss_pred EEEECCCCChHHHHHHHHHcCCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
++|+||||||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999986543
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00016 Score=57.75 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=23.6
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHc
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
+.+|+++.|.||+|||||||...++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999877764
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.07 E-value=7.6e-05 Score=59.73 Aligned_cols=21 Identities=43% Similarity=0.648 Sum_probs=19.6
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.06 E-value=0.00011 Score=58.49 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.04 E-value=0.00016 Score=57.11 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00018 Score=57.98 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=21.0
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
..+.|+||||+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999888543
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.01 E-value=0.00015 Score=58.61 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++|||||||++.|.|-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00016 Score=59.20 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
++||.|++|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986653
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.00 E-value=0.00015 Score=55.53 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.00 E-value=0.00017 Score=58.12 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+..+++|+||+||||||+.+.|+-.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999853
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00018 Score=56.77 Aligned_cols=22 Identities=45% Similarity=0.670 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+++|+|.+|+|||||+|.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.96 E-value=0.00018 Score=58.38 Aligned_cols=22 Identities=59% Similarity=0.714 Sum_probs=19.4
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|+||||||||||.+.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987643
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.95 E-value=0.00018 Score=55.26 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.9
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|++|||||||++.+++-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998854
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.94 E-value=0.00019 Score=57.18 Aligned_cols=23 Identities=43% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-+||+|+.|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999753
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.94 E-value=0.00012 Score=57.65 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|++|||||||++.+.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.93 E-value=0.00019 Score=55.47 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|+|++|||||||++.+.+-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998754
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.91 E-value=0.00023 Score=56.51 Aligned_cols=23 Identities=48% Similarity=0.569 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++|+|++|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.89 E-value=0.00023 Score=55.99 Aligned_cols=22 Identities=45% Similarity=0.708 Sum_probs=19.6
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999999754
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.88 E-value=0.00025 Score=57.24 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+-.++.|+||.||||||+.+.|+..+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.88 E-value=0.00015 Score=57.77 Aligned_cols=22 Identities=45% Similarity=0.690 Sum_probs=20.2
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+||+|++|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998753
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.87 E-value=0.00027 Score=59.30 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=26.6
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNG 51 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G 51 (290)
...+.+.||+|||||||.+.|++.+.. +-+.+++
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~-----~~~~i~~ 65 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 65 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhc-----ceEEEec
Confidence 346889999999999999999987643 3455554
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.85 E-value=0.00019 Score=57.96 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+.+.++.|+||+||||||+.+.|+-.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.82 E-value=0.00028 Score=55.70 Aligned_cols=26 Identities=35% Similarity=0.555 Sum_probs=22.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.++.|.|++||||||+.+.|+..+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36788999999999999999987653
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.79 E-value=0.00028 Score=55.80 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999998543
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.00033 Score=54.26 Aligned_cols=23 Identities=52% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|+.|+|||||++.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00034 Score=56.16 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++.|+||.||||||..+.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999999999853
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.72 E-value=0.00036 Score=54.78 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.2
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.|+|++||||||+-+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4677999999999999999654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.70 E-value=0.00033 Score=56.23 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+.|+||.||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999854
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.69 E-value=0.00035 Score=54.46 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|+|+.|||||||++.|.+-.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999998754
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.69 E-value=0.00039 Score=54.95 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=19.4
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.|+||.||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998643
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.68 E-value=0.00044 Score=55.72 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++++|.+|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999644
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.00017 Score=56.87 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998853
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.67 E-value=0.00021 Score=63.16 Aligned_cols=28 Identities=29% Similarity=0.662 Sum_probs=24.9
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLPDD 40 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~~~ 40 (290)
|.-+.|.||.||||||||++|++..++.
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred CCCEEEEeeccccchHHHHHHhhhcccc
Confidence 4458999999999999999999998874
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.66 E-value=0.00051 Score=55.00 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHc
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
+|=.+.|+||.||||||+.+.|+-
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 566778999999999999999995
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.63 E-value=0.00049 Score=54.89 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=20.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHH
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~ 34 (290)
..-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345799999999999999998775
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.61 E-value=0.00051 Score=56.13 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++|-||+||||||+.+.|+.-+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47888999999999999999644
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.00055 Score=55.56 Aligned_cols=23 Identities=48% Similarity=0.736 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+++|.||+||||||+-+.|+..+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999654
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.57 E-value=0.0005 Score=55.79 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|||||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.56 E-value=0.00016 Score=56.02 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|+|++|+|||||+|.|+|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.55 E-value=0.0005 Score=55.12 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G 35 (290)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.55 E-value=0.0005 Score=54.83 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+||+|+..||||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.54 E-value=0.00062 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999643
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.53 E-value=0.00043 Score=55.61 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.0
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.-+++|-|+.||||||+++.|+..+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998754
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.51 E-value=0.00054 Score=53.70 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999985
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.49 E-value=0.00052 Score=58.31 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.49 E-value=0.00075 Score=55.53 Aligned_cols=44 Identities=30% Similarity=0.399 Sum_probs=30.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCCccEEEECCEecC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLPDDCIIDGDIRVNGKPVE 55 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~~~~~~~G~I~i~G~~~~ 55 (290)
++|-++-+.|.+|||||||.+.|.-.+.... ..-.+.++|-.+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CceEEEEcchHHH
Confidence 4788999999999999999999875432100 0135677776543
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.48 E-value=0.00067 Score=55.56 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.9
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHH
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~ 34 (290)
+.+|+++.|.||+|||||||..-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999987665
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.46 E-value=0.00066 Score=52.95 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=18.6
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++++|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988753
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.00054 Score=56.51 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998764
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.40 E-value=0.00079 Score=53.38 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=19.4
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.|+||.||||||+-+.|+..+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998543
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.37 E-value=0.00075 Score=55.70 Aligned_cols=26 Identities=35% Similarity=0.653 Sum_probs=20.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.+.+++++||+|+||||.+-=|+-.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999865455443
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.00054 Score=60.49 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=22.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.-++||.||.|||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999986543
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.00079 Score=53.29 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.9
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+.|+||.||||||..+.|+-.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999854
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.32 E-value=0.00094 Score=53.07 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=18.8
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+.|+||.||||||+.+.|+-.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999864
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.31 E-value=0.001 Score=55.24 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
..+.|.||+|+||||+.++|+..+
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999754
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.31 E-value=0.00092 Score=55.08 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=32.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
++.++++||- ..+.......+...+..- .....+|++++.+......+.+|...
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~--~~~~~~i~~~n~~~~i~~~l~sR~~~ 162 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQSRCAI 162 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccC--CcceEEEeccCChhhchHhHhCcccc
Confidence 5679999995 344455555566665543 23456777877764333445555544
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.28 E-value=0.00099 Score=53.71 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.++|+||.||||||+.+.|+-.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999964
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.27 E-value=0.001 Score=54.21 Aligned_cols=21 Identities=29% Similarity=0.639 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G 35 (290)
++||+|+.||||||+.+++..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.25 E-value=0.001 Score=55.19 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+.++.|.||.|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4678999999999999999987753
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.25 E-value=0.001 Score=52.16 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=18.9
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|++|+|||||++.+.+-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.0017 Score=51.48 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.9
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999988853
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.24 E-value=0.0013 Score=54.24 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHH
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAAL 33 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l 33 (290)
+.+|+++.|.||+|||||||.--+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 689999999999999999996543
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0012 Score=53.78 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987554
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.21 E-value=0.0014 Score=53.51 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHH
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~ 34 (290)
+.+|+++.|.|++|+|||||..-++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999976554
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.19 E-value=0.0011 Score=51.86 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.7
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999987653
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.18 E-value=0.0011 Score=54.66 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.+.+.||+|+|||||.++|+..+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 377999999999999999997654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.0013 Score=54.07 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
+.|-+++|-|+.||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999887554
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.0015 Score=53.76 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.7
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHH
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~ 34 (290)
+.+|+++.|.||+|||||||.-.++
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999977665
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=96.15 E-value=0.00092 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++.+.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.0011 Score=51.77 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=19.0
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999999988764
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.14 E-value=0.0015 Score=53.01 Aligned_cols=60 Identities=13% Similarity=0.011 Sum_probs=38.6
Q ss_pred hCCCeEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcH--------HHHhhcCeEEEEe
Q psy2520 146 TDPALLLCDEPTTGL----DSFSASKLIRMMRELTSQRKKTVLCTIHQPSS--------ELIDMFDKIILLA 205 (290)
Q Consensus 146 ~~p~llllDEPtsgL----D~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~--------~~~~~~d~v~~l~ 205 (290)
.+|+++++|--++-. +.....+.+..+...+++.+.|+++++|.... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 589999999765432 33444445555555546678999998885421 2445788888774
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.12 E-value=0.0016 Score=53.53 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=25.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
+|.+++|=|+.||||||+.+.|+..+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6899999999999999999999977664
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.0013 Score=51.83 Aligned_cols=21 Identities=43% Similarity=0.798 Sum_probs=18.6
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|+.|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977653
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.12 E-value=0.0011 Score=59.85 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+||+|.+|+|||||+|.|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.11 E-value=0.0014 Score=54.40 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.0013 Score=53.98 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=19.7
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+.|.||+|+|||||.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999653
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.07 E-value=0.0013 Score=57.30 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
|+.-+.++||+|||||+|.++|+..+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 34456789999999999999999864
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.06 E-value=0.0015 Score=50.89 Aligned_cols=20 Identities=20% Similarity=0.561 Sum_probs=17.9
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.05 E-value=0.0013 Score=54.50 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=22.2
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 6 LTGAALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 6 is~~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+++.-++-.+++++||+|+||||.+-=|+-.
T Consensus 4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3334455678999999999999876545543
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.04 E-value=0.0014 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-+.+.||+|+|||||.+++++.+
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999754
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.0017 Score=52.91 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G 35 (290)
++||+|+.||||||..+++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999874
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.96 E-value=0.0018 Score=56.94 Aligned_cols=24 Identities=42% Similarity=0.547 Sum_probs=21.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.-.++|.||.|||||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 457999999999999999988854
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0016 Score=56.91 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
++||-|++|||||||.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 899999999999999999987764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.0021 Score=50.43 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=17.9
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++|+|++|+|||||++-+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0018 Score=50.88 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=18.4
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987643
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0019 Score=50.36 Aligned_cols=20 Identities=45% Similarity=0.777 Sum_probs=18.1
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++|+|.+|+|||||++-+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999997775
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.0016 Score=50.78 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G 35 (290)
-++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.92 E-value=0.0016 Score=50.70 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=18.6
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++++|++|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987753
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0018 Score=50.75 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.5
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G 35 (290)
-++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999997664
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.0022 Score=50.08 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=19.5
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|+|+.|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.83 E-value=0.001 Score=57.62 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
++||.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999887654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.83 E-value=0.0021 Score=50.92 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=18.1
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997774
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.0019 Score=50.55 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=19.0
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988853
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.80 E-value=0.0021 Score=54.16 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.3
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.-+.+.||+|||||+|.+.|+..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhc
Confidence 34789999999999999999974
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.0023 Score=49.78 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|+.|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.74 E-value=0.0025 Score=49.36 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=18.1
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++|+|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997774
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0022 Score=49.71 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=18.8
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|..|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.0034 Score=49.22 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|+|..|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.68 E-value=0.0026 Score=49.47 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=18.6
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|.+|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887753
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.0026 Score=52.08 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=33.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEE
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 203 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~ 203 (290)
+.+++++||.- .+....+..+...+... . ....+++++++.......+-.|...
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~-~-~~~~~i~~~~~~~~i~~~l~sr~~~ 154 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELY-S-NSTRFAFACNQSNKIIEPLQSQCAI 154 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHT-T-TTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhcccc-c-cceeeeeccCchhhhhhHHHHHHHH
Confidence 46799999965 55566666676666654 2 3566778877764322334444433
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.68 E-value=0.0014 Score=51.92 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=18.4
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G 35 (290)
-++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998754
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.67 E-value=0.0035 Score=51.47 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=21.2
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+...+++++||+|+||||.+-=|+-.+
T Consensus 8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 8 KDRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp CSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999998876666544
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.67 E-value=0.0027 Score=49.40 Aligned_cols=20 Identities=30% Similarity=0.694 Sum_probs=18.2
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998874
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.66 E-value=0.0031 Score=52.08 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.9
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
..+.|.||.|+||||+++.|+..+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhc
Confidence 47899999999999999999987654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0032 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+..-+.+.||+|||||+|.+.|+..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence 34557899999999999999999754
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.64 E-value=0.003 Score=50.70 Aligned_cols=24 Identities=50% Similarity=0.707 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999997654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.63 E-value=0.0027 Score=49.93 Aligned_cols=21 Identities=43% Similarity=0.757 Sum_probs=18.9
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0025 Score=50.14 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|++|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999887754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0029 Score=49.19 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=18.0
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.59 E-value=0.0025 Score=51.07 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=18.7
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987753
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.56 E-value=0.004 Score=48.96 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=24.6
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 10 ALSGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|.+++|-|+=|||||||.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 3689999999999999999999888543
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0049 Score=47.99 Aligned_cols=20 Identities=40% Similarity=0.727 Sum_probs=17.9
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999996654
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.52 E-value=0.0031 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-+.+.||+|+|||+|.+.|+...
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 47899999999999999999754
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.47 E-value=0.0032 Score=53.44 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+..-+.|.||+|+|||+|.+++++.+
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 44458899999999999999999865
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.47 E-value=0.007 Score=48.35 Aligned_cols=29 Identities=38% Similarity=0.368 Sum_probs=23.7
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHc
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
|+..-.|.=+.|.|+||+|||||.-.+..
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 44556788899999999999999876664
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.44 E-value=0.0038 Score=53.82 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 8899999999999999877644
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.43 E-value=0.003 Score=52.23 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=35.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 201 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v 201 (290)
+.+++++||.-. |.......+.+.+... . .+..+|++++++......+-+|+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~-~-~~~~~Il~tn~~~~i~~~l~sR~ 182 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY-S-KNIRLIMVCDSMSPIIAPIKSQC 182 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS-T-TTEEEEEEESCSCSSCHHHHTTS
T ss_pred CceEEEeccccc-cccccchhhhcccccc-c-ccccceeeeccccchhhhhhcch
Confidence 567999999854 7888888887777664 2 35668889988753333344554
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.43 E-value=0.0036 Score=48.73 Aligned_cols=21 Identities=19% Similarity=0.534 Sum_probs=18.1
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|..|+|||||++-+.+-
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999976643
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=95.41 E-value=0.0021 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-+.|+|++|+|||||++.+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.0032 Score=49.24 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=18.2
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++|+|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.0037 Score=49.38 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++|+|.+|+|||||++.+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999887753
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.39 E-value=0.0037 Score=51.00 Aligned_cols=54 Identities=9% Similarity=0.162 Sum_probs=35.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 148 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 148 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
.+++++||. ..+....+..++..|... . ....++++++++......+-+|...+
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~-~-~~~~~~~~~~~~~~i~~~i~sr~~~i 153 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERY-T-KNTRFCVLANYAHKLTPALLSQCTRF 153 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHT-T-TTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhc-c-cceeeccccCcHHHhHHHHHHHHhhh
Confidence 469999996 467888888888888776 2 24566777766543233344454433
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0039 Score=48.60 Aligned_cols=21 Identities=38% Similarity=0.700 Sum_probs=18.6
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++|+|+.|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.0034 Score=49.20 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.4
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G 35 (290)
-++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.0039 Score=48.59 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=18.5
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++++|..|+|||||++-+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988743
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.37 E-value=0.0066 Score=48.54 Aligned_cols=28 Identities=32% Similarity=0.286 Sum_probs=23.1
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHH
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~ 34 (290)
|+..-.|.-+.|.||||+|||||...+.
T Consensus 9 ~~v~~~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 9 VLLEVFGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEETTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEECCEEEEEEcCCCCCHHHHHHHHH
Confidence 4444578899999999999999987765
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.32 E-value=0.0019 Score=56.39 Aligned_cols=26 Identities=42% Similarity=0.624 Sum_probs=23.6
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.-+.|+||.|+|||||++.+++++++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35789999999999999999999876
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.30 E-value=0.004 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-+.|.||+|+|||+|.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 37899999999999999999853
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.30 E-value=0.0026 Score=49.89 Aligned_cols=20 Identities=35% Similarity=0.679 Sum_probs=8.5
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++|+|..|+|||||++.+++
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.0034 Score=51.74 Aligned_cols=25 Identities=24% Similarity=0.585 Sum_probs=19.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-.+++++||+|+||||.+-=|+-.+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999998865556443
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.25 E-value=0.0046 Score=48.31 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=17.9
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++++|..|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999997775
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.21 E-value=0.0032 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45567999999999999999764
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.0037 Score=53.64 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.9
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999865
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.17 E-value=0.0051 Score=50.61 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=15.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
...+++++||+|+||||.+-=|+-.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999886555543
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.17 E-value=0.006 Score=48.87 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEECCCCChHHHHHHHHHcCCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
+||+|.-.+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 69999999999999999998643
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.0025 Score=49.92 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=17.2
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++|+|+.|+|||||++.+++
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.13 E-value=0.0051 Score=47.97 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.4
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q psy2520 15 LVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G 35 (290)
-++|+|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.12 E-value=0.0057 Score=55.08 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeE
Q psy2520 139 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 201 (290)
Q Consensus 139 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v 201 (290)
++..+|=++|+++++.|.. |+.++...+ +. ...|..|+.+.|-.+ +....+|+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~a-a~tGhlV~tTlHa~~--a~~~~~Rl 271 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QA-SLTGHLVMSTLHTNT--AVGAVTRL 271 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HH-HHTTCEEEEEECCSS--SHHHHHHH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HH-HhcCCeEEEEeccCc--hHhhhhhh
Confidence 3445666899999999986 455444433 33 345899999999743 34444443
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.09 E-value=0.0094 Score=47.26 Aligned_cols=29 Identities=34% Similarity=0.338 Sum_probs=23.8
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHc
Q psy2520 7 TGAALSGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 7 s~~~~~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
++..-.|.=+.|.|+||+|||||.-.+..
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 55566788999999999999999866553
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=0.0056 Score=48.36 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-++++|+.|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999976653
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.04 E-value=0.0054 Score=48.58 Aligned_cols=19 Identities=37% Similarity=0.697 Sum_probs=17.3
Q ss_pred EEEECCCCChHHHHHHHHH
Q psy2520 16 VAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~ 34 (290)
+.|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999874
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.04 E-value=0.0048 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.3
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+||+|..-+|||||+|.|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999998854
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.96 E-value=0.0061 Score=47.26 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=18.0
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++|+|.+|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999998764
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.0082 Score=50.97 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=29.1
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHc-CCCCCCCCccEEEECCEe
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGDIRVNGKP 53 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G-~~~~~~~~~G~I~i~G~~ 53 (290)
=+.+|.++-|.||+|||||||.-.++. ...+. .--++++.+.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g---~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCC---CEEEEEcccc
Confidence 467899999999999999999655543 33342 1235665543
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.90 E-value=0.0057 Score=48.48 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=18.0
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++|+|..|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 79999999999999987664
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.90 E-value=0.0052 Score=52.85 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
-+||+|...|||||||++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999975
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.0065 Score=52.34 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=24.9
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
.+-.|+..+|+|++|+|||||+..|+.-
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999988853
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.85 E-value=0.0078 Score=49.50 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.9
Q ss_pred eEEEEECCCCChHHHHHHHHHc
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G 35 (290)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999964
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.85 E-value=0.0052 Score=56.16 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
=+.++||+|||||-|.+.|++.+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999763
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.83 E-value=0.0069 Score=49.62 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHH-cCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALS-QRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~-G~~~~ 39 (290)
-+.|+|++|+|||||++-+. +-..|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~p 33 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVL 33 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCC
Confidence 46899999999999998764 33344
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.82 E-value=0.0061 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.++|+|.-.||||||+|+|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999965
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.76 E-value=0.006 Score=52.03 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.6
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
++|+|.-.||||||+|+|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999965
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.0067 Score=48.23 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=17.7
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++|+|+.|+|||||++.+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.61 E-value=0.0076 Score=47.54 Aligned_cols=20 Identities=30% Similarity=0.662 Sum_probs=17.2
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++++|.+|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999976553
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.012 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
|...+.++||+|+|||.|.+.|+..+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 44578899999999999999999764
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.012 Score=48.21 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=22.6
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.+++|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 47899999999999999999976543
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.14 E-value=0.012 Score=50.02 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-+||||-.-+|||||+++|++--
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.05 E-value=0.013 Score=47.58 Aligned_cols=20 Identities=45% Similarity=0.584 Sum_probs=18.3
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++|+|.-+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999863
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.04 E-value=0.013 Score=45.94 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=18.4
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+.|+|..|+|||||++-+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999988643
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.01 Score=48.91 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
++.|.|.=||||||||+-+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999988764
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.93 E-value=0.017 Score=46.47 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
|.=-+||+|.-.+|||||++.|.|...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 333489999999999999999998654
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.83 E-value=0.016 Score=45.27 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEECCCCChHHHHHHHHHcCCCC
Q psy2520 16 VAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
++|+|..|+|||||++-+..-..|
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~ 28 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEA 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCCCC
Confidence 689999999999999987644334
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.75 E-value=0.018 Score=48.98 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=28.9
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHc-CCCCCCCCccE-EEECCEe
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQ-RLPDDCIIDGD-IRVNGKP 53 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G-~~~~~~~~~G~-I~i~G~~ 53 (290)
=+..|.++-|.||+|+|||||+-.++. .... .|. |+||.+.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~----g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA----GGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHT----TCEEEEEESSC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcC----CCEEEEEECCc
Confidence 467899999999999999999654443 2233 233 5666654
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.71 E-value=0.016 Score=47.26 Aligned_cols=91 Identities=12% Similarity=0.137 Sum_probs=55.4
Q ss_pred HhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHH----HhhcCeEEEEeCCeEEEEcCHHHH-
Q psy2520 145 LTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL----IDMFDKIILLADSRTAFIGSKDAA- 218 (290)
Q Consensus 145 ~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~----~~~~d~v~~l~~G~i~~~g~~~~~- 218 (290)
....++|++|+--. .-++..+..++.++..+ .+.|+.+|+++..+..++ .++.+| +..|-++.-.++++.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~-~~~~~~iiits~~~p~~l~~~~~dL~SR---L~~g~~~~i~p~d~~~ 170 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTL-YLLEKQIILASDRHPQKLDGVSDRLVSR---FEGGILVEIELDNKTR 170 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHH-HHTTCEEEEEESSCGGGCTTSCHHHHHH---HHTSEEEECCCCHHHH
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHH-hhccceEEEecCCcchhccccchHHHHH---hhCceEEEECCCcHHH
Confidence 45789999998744 23577788899999998 556888888887654322 223334 455655544344432
Q ss_pred ----HHHHHHCCCCCCCCCChHHHHHH
Q psy2520 219 ----LAFLESQGYPCPYGYNPADFLIK 241 (290)
Q Consensus 219 ----~~~~~~~g~~~~~~~~~~~~~~~ 241 (290)
.....+.|+..+. +..+|+..
T Consensus 171 ~~iL~~~a~~rgl~l~~--~v~~yl~~ 195 (213)
T d1l8qa2 171 FKIIKEKLKEFNLELRK--EVIDYLLE 195 (213)
T ss_dssp HHHHHHHHHHTTCCCCH--HHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCH--HHHHHHHH
Confidence 1244566765542 44555543
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.68 E-value=0.014 Score=49.50 Aligned_cols=20 Identities=50% Similarity=0.738 Sum_probs=18.1
Q ss_pred EEEEECCCCChHHHHHHHHH
Q psy2520 15 LVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~ 34 (290)
-++|+|+.|||||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999884
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.57 E-value=0.017 Score=51.20 Aligned_cols=28 Identities=29% Similarity=0.220 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.++..+.+.||.|+|||||.+.|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999998754
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.46 E-value=0.023 Score=48.27 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=24.1
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
=++.|.++-|.||+|||||||.-.++..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHH
Confidence 4688999999999999999998766654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.18 E-value=0.02 Score=48.88 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHH---HcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAAL---SQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l---~G~~~~ 39 (290)
-+||+|+.|||||||...| +|....
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc
Confidence 4799999999999999887 465543
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=93.14 E-value=0.024 Score=49.36 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=21.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.-++.+.||+|+|||.|.+.|++..
T Consensus 123 ~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 123 SGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp SEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHHh
Confidence 3366778999999999999999863
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.87 E-value=0.022 Score=50.68 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=28.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHh
Q psy2520 149 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 196 (290)
Q Consensus 149 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~ 196 (290)
-++++||--+-.... .+.+++... ++.|..++++++++. ++..
T Consensus 278 v~l~lDE~~~~~~~~---~l~~~l~~~-Rk~Gv~~~l~~Qs~~-ql~~ 320 (433)
T d1e9ra_ 278 LWLFIDELASLEKLA---SLADALTKG-RKAGLRVVAGLQSTS-QLDD 320 (433)
T ss_dssp EEEEESCGGGSCBCS---SHHHHHHHC-TTTTEEEEEEESCHH-HHHH
T ss_pred eEEEechHhhhcccH---HHHHHHHHh-CCCCceEEEEeccHH-HHHH
Confidence 367889964433311 255666666 567999999999874 5543
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.85 E-value=0.032 Score=47.16 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHc
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998764
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.85 E-value=0.033 Score=47.43 Aligned_cols=27 Identities=26% Similarity=0.539 Sum_probs=23.7
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHc
Q psy2520 9 AALSGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 9 ~~~~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
.+-.|+..+|+|++|+|||||+..++-
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred cccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 467899999999999999999777753
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.73 E-value=0.029 Score=46.18 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=38.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 148 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 148 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
.+++|+||.= .|...++..+++.|.+. ..+..+|++|+++......+-+|..++
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~--~~~~~~il~tn~~~~i~~~i~SRc~~i 169 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILSRCLQF 169 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSC--CTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcC--CCCeEEEEEcCCccccChhHhhhhccc
Confidence 4699999985 48888887777777654 236788999988754445555665554
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.58 E-value=0.032 Score=45.09 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=35.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEE
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 204 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l 204 (290)
+.+++|+||. -.|...++..+++.|.+. . .+..+|++|+++......+-+|+..+
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep-~-~~~~fIl~t~~~~~ll~tI~SRc~~i 162 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEP-P-AETWFFLATREPERLLATLRSRCRLH 162 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSC-C-TTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhh-c-ccceeeeeecChhhhhhhhcceeEEE
Confidence 4679999976 445566777777777654 2 35667888988753333344565433
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=92.25 E-value=0.036 Score=44.60 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.2
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy2520 16 VAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G~ 36 (290)
+||+|.-.+|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999998864
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.71 E-value=0.047 Score=47.20 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
|.-.+.++||+|+|||.|.+.|+-.+
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHHHh
Confidence 44467899999999999999999765
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.34 E-value=0.052 Score=45.91 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=20.8
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 14 TLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 14 e~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.-..|+||+|+|||++..-++..+.
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHHH
Confidence 3468999999999999998886543
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=91.10 E-value=0.054 Score=47.78 Aligned_cols=26 Identities=23% Similarity=0.556 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
++ -+.++||+|+|||-|.+.|+....
T Consensus 68 ~~-niLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 68 KS-NILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CC-CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred Cc-ceeeeCCCCccHHHHHHHHHhhcc
Confidence 44 367789999999999999998753
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.71 E-value=0.068 Score=43.01 Aligned_cols=23 Identities=30% Similarity=0.676 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
-..|+||+|.|||++..-|+..+
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 46899999999999999888654
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=90.62 E-value=0.053 Score=45.34 Aligned_cols=16 Identities=19% Similarity=0.582 Sum_probs=13.6
Q ss_pred EEEEECCCCChHHHHH
Q psy2520 15 LVAIMGASGAGKSTLL 30 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl 30 (290)
-+.|+|+.||||||.|
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4689999999999754
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=90.61 E-value=0.055 Score=46.72 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=17.8
Q ss_pred eCCeEEEEECCCCChHHHHH
Q psy2520 11 LSGTLVAIMGASGAGKSTLL 30 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl 30 (290)
+.|++..+.|.||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46899999999999999974
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=90.43 E-value=0.047 Score=46.24 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=13.6
Q ss_pred EEEEECCCCChHHHHH
Q psy2520 15 LVAIMGASGAGKSTLL 30 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl 30 (290)
.+.|.|+.||||||.|
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4779999999999765
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.38 E-value=0.064 Score=43.71 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=17.4
Q ss_pred EEEECCCCChHHHHHHHHH
Q psy2520 16 VAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~ 34 (290)
++|+|.-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7999999999999998874
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=90.09 E-value=0.19 Score=38.90 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=46.7
Q ss_pred CCCeEEEeCCCCC--CCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEeC
Q psy2520 147 DPALLLCDEPTTG--LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 206 (290)
Q Consensus 147 ~p~llllDEPtsg--LD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~~ 206 (290)
+.+++||||-... +......+++++|+. +-.+.-+|+|-+++..++.++||.|.-|..
T Consensus 94 ~~dllILDEi~~Ai~~gli~~~~v~~ll~~--rp~~~evVlTGr~~p~~L~e~ADlVTEm~~ 153 (157)
T d1g5ta_ 94 LLDMVVLDELTYMVAYDYLPLEEVISALNA--RPGHQTVIITGRGCHRDILDLADTVSELRP 153 (157)
T ss_dssp TCSEEEEETHHHHHHTTSSCHHHHHHHHHT--SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred ccCEEeHHHHHHHHHcCCCCHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence 4799999999774 344556788888875 334789999999999999999999988753
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=90.04 E-value=0.057 Score=46.73 Aligned_cols=19 Identities=42% Similarity=0.735 Sum_probs=17.2
Q ss_pred CCeEEEEECCCCChHHHHH
Q psy2520 12 SGTLVAIMGASGAGKSTLL 30 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl 30 (290)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4899999999999999973
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=89.97 E-value=0.072 Score=46.44 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.+.|=|+-||||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCccCCHHHHHHHHHHHhcc
Confidence 3677899999999999999987654
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=89.52 E-value=0.11 Score=45.07 Aligned_cols=24 Identities=33% Similarity=0.266 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
.++|=|+=||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 377889999999999999987654
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=89.32 E-value=0.097 Score=42.76 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=18.2
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy2520 16 VAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~G 35 (290)
++++|.-.+|||||++.|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 69999999999999999964
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=89.15 E-value=0.13 Score=38.94 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=19.6
Q ss_pred CeEEEEECCCCChHHH-HHHHHHc
Q psy2520 13 GTLVAIMGASGAGKST-LLAALSQ 35 (290)
Q Consensus 13 Ge~~~IiGpnGaGKST-Ll~~l~G 35 (290)
|.+..|+||=.||||| |++.+-.
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~ 25 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHR 25 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHH
Confidence 7889999999999999 7776654
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=88.96 E-value=0.089 Score=45.54 Aligned_cols=19 Identities=42% Similarity=0.733 Sum_probs=17.6
Q ss_pred CCeEEEEECCCCChHHHHH
Q psy2520 12 SGTLVAIMGASGAGKSTLL 30 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl 30 (290)
.|++..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6889999999999999995
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=88.66 E-value=0.1 Score=43.95 Aligned_cols=26 Identities=15% Similarity=0.414 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
+--++.+.||.++|||||+++|+.++
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34578899999999999999999886
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=88.58 E-value=0.13 Score=45.03 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=17.3
Q ss_pred CCeEEEEECCCCChHHHHHH
Q psy2520 12 SGTLVAIMGASGAGKSTLLA 31 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~ 31 (290)
.+.++.|.||.|+||||++.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHH
Confidence 35699999999999999874
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=88.54 E-value=0.067 Score=45.42 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=23.6
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHc
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
+.+-+|+..+|+|++|+|||+|+..++-
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~ 89 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTIL 89 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred ccccCCceEeeccCCCCChHHHHHHHHh
Confidence 3567899999999999999999875543
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=88.02 E-value=0.046 Score=39.88 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=17.8
Q ss_pred EeCCeEEEEECCCCChHHHHH
Q psy2520 10 ALSGTLVAIMGASGAGKSTLL 30 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKSTLl 30 (290)
+++|+.+.|.+|.|||||+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 468999999999999999543
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.92 E-value=0.094 Score=44.69 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=22.8
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHH
Q psy2520 8 GAALSGTLVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 8 ~~~~~Ge~~~IiGpnGaGKSTLl~~l~ 34 (290)
+.+-.|+..+|+|++|+|||||+.-++
T Consensus 63 ~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 63 VPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cCccCCCEEEeecCCCCChHHHHHHHH
Confidence 356789999999999999999976444
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=87.64 E-value=0.16 Score=42.53 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.7
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 13 GTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 13 Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
+=.++|+|-.-+|||||+|.|.|...
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEEecCccchhhhhhhhhccce
Confidence 34589999999999999999999654
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.51 E-value=0.12 Score=45.19 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEECCCCChHHHHHHHHH---cCCCC
Q psy2520 16 VAIMGASGAGKSTLLAALS---QRLPD 39 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~---G~~~~ 39 (290)
+||+|+-|+|||||+..|. |....
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~~ 46 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIISA 46 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCBC
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCccc
Confidence 8999999999999999884 65543
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=87.28 E-value=0.077 Score=44.34 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=20.0
Q ss_pred EeCCeEEEEECCCCChHHH--HHHHHH
Q psy2520 10 ALSGTLVAIMGASGAGKST--LLAALS 34 (290)
Q Consensus 10 ~~~Ge~~~IiGpnGaGKST--Ll~~l~ 34 (290)
+.+|+.+.|.+|.|||||+ |..++.
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~ 32 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVR 32 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 5689999999999999996 334443
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=86.99 E-value=0.13 Score=37.90 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=23.4
Q ss_pred HHhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2520 144 LLTDPALLLCDEPTTGLDSFSASKLIRMMREL 175 (290)
Q Consensus 144 L~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 175 (290)
...+-+++|+||--. +|..+...+..+++.+
T Consensus 91 ~~~~~~~vIiDE~H~-~~~~~~~~~~~~l~~~ 121 (136)
T d1a1va1 91 SGGAYDIIICDECHS-TDATSILGIGTVLDQA 121 (136)
T ss_dssp GGCCCSEEEEETTTC-CSHHHHHHHHHHHHHT
T ss_pred hhhcCCEEEEecccc-cCHHHHHHHHHHHHHH
Confidence 446779999999964 6887777777777665
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.95 E-value=0.22 Score=39.65 Aligned_cols=56 Identities=5% Similarity=0.117 Sum_probs=40.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcHHHHhhcCeEEEEe
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 205 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~tii~~tH~~~~~~~~~~d~v~~l~ 205 (290)
+.+|+|+||. -.|...++..+++.|.+. . .+..+|++|+++...+..+-.|+..+.
T Consensus 79 ~~KviIId~a-d~l~~~aqNaLLK~LEEP-p-~~t~fiLit~~~~~ll~TI~SRC~~i~ 134 (198)
T d2gnoa2 79 TRKYVIVHDC-ERMTQQAANAFLKALEEP-P-EYAVIVLNTRRWHYLLPTIKSRVFRVV 134 (198)
T ss_dssp SSEEEEETTG-GGBCHHHHHHTHHHHHSC-C-TTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred CCEEEEEeCc-cccchhhhhHHHHHHhCC-C-CCceeeeccCChhhCHHHHhcceEEEe
Confidence 4589999994 567888888888888765 2 367788999987654455666765554
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.75 E-value=0.12 Score=42.70 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=17.6
Q ss_pred EEEECCCCChHHHHHHHHH
Q psy2520 16 VAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~ 34 (290)
++|+|.-++|||||+..|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHH
Confidence 8999999999999999883
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=86.44 E-value=0.13 Score=44.70 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q psy2520 15 LVAIMGASGAGKSTLLAALSQRLPD 39 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~G~~~~ 39 (290)
.++|=|+=||||||+++.|+..+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3788899999999999999987664
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.39 E-value=0.17 Score=41.71 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=17.5
Q ss_pred EEEEECCCCChHHHHHHHHH
Q psy2520 15 LVAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 15 ~~~IiGpnGaGKSTLl~~l~ 34 (290)
-++|+|.-++|||||...|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 36899999999999988774
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.13 E-value=0.22 Score=37.23 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=20.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRL 37 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~ 37 (290)
.|.+..|+||=.|||||-|--.+-.+
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~~ 26 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRRF 26 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEEecccCHHHHHHHHHHHHH
Confidence 58999999999999999654444333
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=85.43 E-value=0.16 Score=41.03 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQRLP 38 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~~~ 38 (290)
+-..+.+.||.++|||++...|+.++.
T Consensus 52 Kkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 52 KKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCccHHHHHHHHHHHhC
Confidence 445889999999999999999998863
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.28 E-value=0.21 Score=44.18 Aligned_cols=19 Identities=26% Similarity=0.691 Sum_probs=16.3
Q ss_pred EEEECCCCChHHHHHHHHH
Q psy2520 16 VAIMGASGAGKSTLLAALS 34 (290)
Q Consensus 16 ~~IiGpnGaGKSTLl~~l~ 34 (290)
..||||+|.|||+++.-|+
T Consensus 46 ~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp CEEEECTTSCHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHH
Confidence 5789999999999987555
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=84.08 E-value=0.27 Score=40.56 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=22.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q psy2520 147 DPALLLCDEPTTGLDSFSASKLIRMMRE 174 (290)
Q Consensus 147 ~p~llllDEPtsgLD~~~~~~i~~~l~~ 174 (290)
+--.|++||. ..|++..+..+.+.|..
T Consensus 94 ~gGtL~l~~i-~~L~~~~Q~~L~~~l~~ 120 (247)
T d1ny5a2 94 DGGTLFLDEI-GELSLEAQAKLLRVIES 120 (247)
T ss_dssp TTSEEEEESG-GGCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCh-HhCCHHHHHHHHHHHHh
Confidence 4567999998 67899999999999975
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.11 E-value=0.4 Score=35.32 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=22.1
Q ss_pred eCCeEEEEECCCCChHHHHHHHHH-cCCC
Q psy2520 11 LSGTLVAIMGASGAGKSTLLAALS-QRLP 38 (290)
Q Consensus 11 ~~Ge~~~IiGpnGaGKSTLl~~l~-G~~~ 38 (290)
+.|=.+.+.|-+|||||||.++|. -++.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q 32 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 32 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 356677889999999999999885 4433
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.89 E-value=0.16 Score=40.08 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.3
Q ss_pred CCeEEEEECCCCChHHHH
Q psy2520 12 SGTLVAIMGASGAGKSTL 29 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTL 29 (290)
.|+-+.|.+|.|||||+.
T Consensus 39 ~~~~~il~apTGsGKT~~ 56 (202)
T d2p6ra3 39 SGKNLLLAMPTAAGKTLL 56 (202)
T ss_dssp TCSCEEEECSSHHHHHHH
T ss_pred cCCCEEEEcCCCCchhHH
Confidence 466678999999999976
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=81.27 E-value=0.45 Score=45.13 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=20.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHc
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQ 35 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G 35 (290)
..+.+.|.|.||||||+-.|.|..
T Consensus 85 ~~QsIiisGeSGsGKTe~~k~il~ 108 (684)
T d1lkxa_ 85 ENQCVIISGESGAGKTEASKKIMQ 108 (684)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999998776643
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=80.44 E-value=0.47 Score=45.23 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q psy2520 12 SGTLVAIMGASGAGKSTLLAALSQR 36 (290)
Q Consensus 12 ~Ge~~~IiGpnGaGKSTLl~~l~G~ 36 (290)
..+.+.|.|.||||||+-.|.|...
T Consensus 124 ~nQsIiisGeSGaGKTe~~k~il~y 148 (712)
T d1d0xa2 124 QNQSLLITGESGAGKTENTKKVIQY 148 (712)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHH
Confidence 4689999999999999988777543
|