Psyllid ID: psy257

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMVSITKQYETIPTCLSYMSGWRTLNRETSVLLWHYRIGIRTAKTSPAWLGGGYKGFIMLQKKSTDPTDG
cHHHHHHccccEEEHHHHHHHHHHccccccccHHHHHHHHHccccEEEccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHcccccccccEEEEEccccccccccc
HHHHHHHHcccEEEcccccHHHHccccccHHHHHHHHHHHHHcccEEEEcHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHccccccEEEEEcccHHcccccc
miakcnkvgkpVICATQMLESmikkpratrAEISDVANAVLDGadcvmlsgetakgdypVECVRAMHNTCKEAEAAIWHTKLLTELKSMVSITKqyetiptclsymsgwrtlNRETSVLLWHYRIGirtaktspawlgggykGFIMLqkkstdptdg
miakcnkvgkpviCATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMVSITKQYETIPTCLSYMSGWRTLNRETSVLLWHYRIGIRtaktspawlggGYKGFimlqkkstdptdg
MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMVSITKQYETIPTCLSYMSGWRTLNRETSVLLWHYRIGIRTAKTSPAWLGGGYKGFIMLQKKSTDPTDG
******KVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMVSITKQYETIPTCLSYMSGWRTLNRETSVLLWHYRIGIRTAKTSPAWLGGGYKGFIML**********
MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELK*********ETIPTCLSYMSGWRTLNRETSVLLWHYRIGIRTAKTSPAWLGGGYKGFIM***********
MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMVSITKQYETIPTCLSYMSGWRTLNRETSVLLWHYRIGIRTAKTSPAWLGGGYKGFIMLQK********
MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMVSITKQYETIPTCLSYMSGWRTLNRETSVLLWHYRIGIRTAKTSPAWLGGGYKGFIMLQK********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHTKLLTELKSMVSITKQYETIPTCLSYMSGWRTLNRETSVLLWHYRIGIRTAKTSPAWLGGGYKGFIMLQKKSTDPTDG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query157 2.2.26 [Sep-21-2011]
O62619533 Pyruvate kinase OS=Drosop yes N/A 0.547 0.161 0.813 3e-37
P14618531 Pyruvate kinase isozymes yes N/A 0.592 0.175 0.731 2e-35
P52480531 Pyruvate kinase isozymes yes N/A 0.592 0.175 0.731 3e-35
P11979531 Pyruvate kinase isozyme M N/A N/A 0.547 0.161 0.767 6e-34
P11974531 Pyruvate kinase isozymes no N/A 0.547 0.161 0.755 2e-33
P11980531 Pyruvate kinase isozymes no N/A 0.547 0.161 0.755 2e-33
Q5NVN0531 Pyruvate kinase isozyme M yes N/A 0.547 0.161 0.755 4e-33
P00548530 Pyruvate kinase muscle is yes N/A 0.547 0.162 0.720 1e-32
P30613574 Pyruvate kinase isozymes no N/A 0.598 0.163 0.648 1e-32
Q29536574 Pyruvate kinase isozymes no N/A 0.598 0.163 0.648 4e-32
>sp|O62619|KPYK_DROME Pyruvate kinase OS=Drosophila melanogaster GN=PyK PE=2 SV=2 Back     alignment and function desciption
 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 76/86 (88%)

Query: 1   MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
           MIA+CNK GKPVICATQMLESM+KKPR TRAEISDVANAVLDGADCVMLSGETAKG+YP+
Sbjct: 316 MIARCNKAGKPVICATQMLESMVKKPRPTRAEISDVANAVLDGADCVMLSGETAKGEYPL 375

Query: 61  ECVRAMHNTCKEAEAAIWHTKLLTEL 86
           ECV  M  TCKEAEAA+WH  L  +L
Sbjct: 376 ECVLTMAKTCKEAEAALWHQNLFNDL 401

Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 0
>sp|P14618|KPYM_HUMAN Pyruvate kinase isozymes M1/M2 OS=Homo sapiens GN=PKM PE=1 SV=4 Back     alignment and function description
>sp|P52480|KPYM_MOUSE Pyruvate kinase isozymes M1/M2 OS=Mus musculus GN=Pkm PE=1 SV=4 Back     alignment and function description
>sp|P11979|KPYM_FELCA Pyruvate kinase isozyme M1/M2 OS=Felis catus GN=PKM PE=1 SV=2 Back     alignment and function description
>sp|P11974|KPYM_RABIT Pyruvate kinase isozymes M1/M2 OS=Oryctolagus cuniculus GN=PKM PE=1 SV=4 Back     alignment and function description
>sp|P11980|KPYM_RAT Pyruvate kinase isozymes M1/M2 OS=Rattus norvegicus GN=Pkm PE=1 SV=3 Back     alignment and function description
>sp|Q5NVN0|KPYM_PONAB Pyruvate kinase isozyme M1/M2 OS=Pongo abelii GN=PKM PE=2 SV=3 Back     alignment and function description
>sp|P00548|KPYK_CHICK Pyruvate kinase muscle isozyme OS=Gallus gallus GN=PKM PE=2 SV=2 Back     alignment and function description
>sp|P30613|KPYR_HUMAN Pyruvate kinase isozymes R/L OS=Homo sapiens GN=PKLR PE=1 SV=2 Back     alignment and function description
>sp|Q29536|KPYR_CANFA Pyruvate kinase isozymes R/L OS=Canis familiaris GN=PKLR PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query157
332020562 544 Pyruvate kinase [Acromyrmex echinatior] 0.560 0.161 0.818 2e-37
322786327 543 hypothetical protein SINV_09693 [Solenop 0.560 0.162 0.818 2e-37
307207885 619 Pyruvate kinase [Harpegnathos saltator] 0.560 0.142 0.806 8e-37
112982707 403 pyruvate kinase [Bombyx mori] gi|3837167 0.573 0.223 0.8 8e-37
388327916 426 pyruvate kinase [Helicoverpa armigera] 0.547 0.201 0.825 9e-37
307177342 1079 Pyruvate kinase [Camponotus floridanus] 0.573 0.083 0.8 1e-36
389609065 528 pyruvate kinase [Papilio xuthus] 0.573 0.170 0.8 1e-36
357630834 469 hypothetical protein KGM_10007 [Danaus p 0.573 0.191 0.8 2e-36
350399609 529 PREDICTED: pyruvate kinase-like isoform 0.547 0.162 0.813 2e-36
350399606 609 PREDICTED: pyruvate kinase-like isoform 0.547 0.141 0.813 3e-36
>gi|332020562|gb|EGI60975.1| Pyruvate kinase [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/88 (81%), Positives = 80/88 (90%)

Query: 1   MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
           MI++CNKVGKPVICATQMLESM+KKPRATRAE SDVANA+LDGADCVMLSGETAKGDYP+
Sbjct: 302 MISRCNKVGKPVICATQMLESMVKKPRATRAETSDVANAILDGADCVMLSGETAKGDYPL 361

Query: 61  ECVRAMHNTCKEAEAAIWHTKLLTELKS 88
           ECVR M N CKEAEAAIW T++  +L S
Sbjct: 362 ECVRTMANICKEAEAAIWQTQIFHDLSS 389

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|322786327|gb|EFZ12877.1| hypothetical protein SINV_09693 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307207885|gb|EFN85446.1| Pyruvate kinase [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|112982707|ref|NP_001036906.1| pyruvate kinase [Bombyx mori] gi|38371675|dbj|BAD01636.1| pyruvate kinase [Bombyx mori] Back     alignment and taxonomy information
>gi|388327916|gb|AFK28501.1| pyruvate kinase [Helicoverpa armigera] Back     alignment and taxonomy information
>gi|307177342|gb|EFN66515.1| Pyruvate kinase [Camponotus floridanus] Back     alignment and taxonomy information
>gi|389609065|dbj|BAM18144.1| pyruvate kinase [Papilio xuthus] Back     alignment and taxonomy information
>gi|357630834|gb|EHJ78694.1| hypothetical protein KGM_10007 [Danaus plexippus] Back     alignment and taxonomy information
>gi|350399609|ref|XP_003485586.1| PREDICTED: pyruvate kinase-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350399606|ref|XP_003485585.1| PREDICTED: pyruvate kinase-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query157
FB|FBgn0003178533 PyK "Pyruvate kinase" [Drosoph 0.547 0.161 0.813 1.1e-34
UNIPROTKB|P14618531 PKM "Pyruvate kinase isozymes 0.592 0.175 0.731 4.5e-32
MGI|MGI:97591531 Pkm "pyruvate kinase, muscle" 0.592 0.175 0.731 4.5e-32
UNIPROTKB|F1SHL9540 PKM "Pyruvate kinase" [Sus scr 0.592 0.172 0.731 5.3e-32
UNIPROTKB|F1PHR2547 PKM "Pyruvate kinase" [Canis l 0.592 0.170 0.731 5.9e-32
UNIPROTKB|A5D984531 PKM2 "Pyruvate kinase" [Bos ta 0.592 0.175 0.731 7.8e-32
UNIPROTKB|F1NW43532 PKM2 "Pyruvate kinase" [Gallus 0.585 0.172 0.717 1e-31
WB|WBGene00014001515 pyk-2 [Caenorhabditis elegans 0.547 0.166 0.779 2.9e-31
UNIPROTKB|H3BTN5485 PKM "Pyruvate kinase" [Homo sa 0.547 0.177 0.767 4.2e-31
UNIPROTKB|Q504U3366 PKM2 "Pyruvate kinase" [Homo s 0.547 0.234 0.767 4.2e-31
FB|FBgn0003178 PyK "Pyruvate kinase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 70/86 (81%), Positives = 76/86 (88%)

Query:     1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
             MIA+CNK GKPVICATQMLESM+KKPR TRAEISDVANAVLDGADCVMLSGETAKG+YP+
Sbjct:   316 MIARCNKAGKPVICATQMLESMVKKPRPTRAEISDVANAVLDGADCVMLSGETAKGEYPL 375

Query:    61 ECVRAMHNTCKEAEAAIWHTKLLTEL 86
             ECV  M  TCKEAEAA+WH  L  +L
Sbjct:   376 ECVLTMAKTCKEAEAALWHQNLFNDL 401
GO:0004743 "pyruvate kinase activity" evidence=ISS;IMP;NAS
GO:0016310 "phosphorylation" evidence=ISS
GO:0006096 "glycolysis" evidence=IEA;NAS
GO:0005829 "cytosol" evidence=IDA
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0030955 "potassium ion binding" evidence=IEA
GO:0005811 "lipid particle" evidence=IDA
UNIPROTKB|P14618 PKM "Pyruvate kinase isozymes M1/M2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:97591 Pkm "pyruvate kinase, muscle" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SHL9 PKM "Pyruvate kinase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHR2 PKM "Pyruvate kinase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A5D984 PKM2 "Pyruvate kinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NW43 PKM2 "Pyruvate kinase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00014001 pyk-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|H3BTN5 PKM "Pyruvate kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q504U3 PKM2 "Pyruvate kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P30614KPYK_YARLI2, ., 7, ., 1, ., 4, 00.650.63050.1922yesN/A
O08309KPYK_CLOAB2, ., 7, ., 1, ., 4, 00.58620.55410.1839yesN/A
Q7A0N4KPYK_STAAW2, ., 7, ., 1, ., 4, 00.59130.59230.1589yesN/A
P00548KPYK_CHICK2, ., 7, ., 1, ., 4, 00.72090.54770.1622yesN/A
P80885KPYK_BACSU2, ., 7, ., 1, ., 4, 00.55910.59230.1589yesN/A
P14618KPYM_HUMAN2, ., 7, ., 1, ., 4, 00.73110.59230.1751yesN/A
Q875M9KPYK_KLULA2, ., 7, ., 1, ., 4, 00.64040.56680.1776yesN/A
Q5NVN0KPYM_PONAB2, ., 7, ., 1, ., 4, 00.75580.54770.1619yesN/A
Q6FV12KPYK2_CANGA2, ., 7, ., 1, ., 4, 00.64770.56050.1732yesN/A
Q6GG09KPYK_STAAR2, ., 7, ., 1, ., 4, 00.59130.59230.1589yesN/A
O62619KPYK_DROME2, ., 7, ., 1, ., 4, 00.81390.54770.1613yesN/A
Q10208KPYK_SCHPO2, ., 7, ., 1, ., 4, 00.65550.57320.1768yesN/A
Q54RF5KPYK_DICDI2, ., 7, ., 1, ., 4, 00.72970.47130.1459yesN/A
Q875Z9KPYK_NAUCC2, ., 7, ., 1, ., 4, 00.62920.56680.1776yesN/A
Q8CS69KPYK_STAES2, ., 7, ., 1, ., 4, 00.62220.57320.1538yesN/A
P22360KPYK_EMENI2, ., 7, ., 1, ., 4, 00.70780.56680.1692yesN/A
Q49YC7KPYK_STAS12, ., 7, ., 1, ., 4, 00.61110.57320.1535yesN/A
Q5HNK7KPYK_STAEQ2, ., 7, ., 1, ., 4, 00.62220.57320.1538yesN/A
Q99TG5KPYK_STAAM2, ., 7, ., 1, ., 4, 00.59130.59230.1589yesN/A
Q759A9KPYK_ASHGO2, ., 7, ., 1, ., 4, 00.64040.56680.1776yesN/A
O65595KPYC_ARATH2, ., 7, ., 1, ., 4, 00.62790.54770.1730yesN/A
P52480KPYM_MOUSE2, ., 7, ., 1, ., 4, 00.73110.59230.1751yesN/A
Q12669KPYK_ASPNG2, ., 7, ., 1, ., 4, 00.70780.56680.1692yesN/A
Q4L739KPYK_STAHJ2, ., 7, ., 1, ., 4, 00.62220.57320.1535yesN/A
P52489KPYK2_YEAST2, ., 7, ., 1, ., 4, 00.67810.55410.1719yesN/A
Q6BS75KPYK_DEBHA2, ., 7, ., 1, ., 4, 00.65930.57960.1805yesN/A
Q7A559KPYK_STAAN2, ., 7, ., 1, ., 4, 00.59130.59230.1589yesN/A
Q6G8M9KPYK_STAAS2, ., 7, ., 1, ., 4, 00.59130.59230.1589yesN/A
P51181KPYK_BACLI2, ., 7, ., 1, ., 4, 00.58060.59230.1589yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.40LOW CONFIDENCE prediction!
3rd Layer2.7.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query157
pfam00224348 pfam00224, PK, Pyruvate kinase, barrel domain 6e-53
cd00288480 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): La 9e-53
TIGR01064473 TIGR01064, pyruv_kin, pyruvate kinase 1e-48
COG0469477 COG0469, PykF, Pyruvate kinase [Carbohydrate trans 3e-46
PRK05826465 PRK05826, PRK05826, pyruvate kinase; Provisional 8e-45
PLN02461511 PLN02461, PLN02461, Probable pyruvate kinase 6e-43
PTZ00066513 PTZ00066, PTZ00066, pyruvate kinase; Provisional 6e-40
PRK06354 590 PRK06354, PRK06354, pyruvate kinase; Provisional 2e-39
PRK09206470 PRK09206, PRK09206, pyruvate kinase; Provisional 2e-35
PRK06247476 PRK06247, PRK06247, pyruvate kinase; Provisional 7e-35
PTZ00300454 PTZ00300, PTZ00300, pyruvate kinase; Provisional 1e-34
PLN02623581 PLN02623, PLN02623, pyruvate kinase 5e-26
PLN02765526 PLN02765, PLN02765, pyruvate kinase 8e-25
PRK06739352 PRK06739, PRK06739, pyruvate kinase; Validated 2e-20
PLN02762509 PLN02762, PLN02762, pyruvate kinase complex alpha 4e-18
PRK14725608 PRK14725, PRK14725, pyruvate kinase; Provisional 7e-11
PRK08187493 PRK08187, PRK08187, pyruvate kinase; Validated 5e-10
>gnl|CDD|215802 pfam00224, PK, Pyruvate kinase, barrel domain Back     alignment and domain information 
 Score =  170 bits (433), Expect = 6e-53
 Identities = 60/83 (72%), Positives = 66/83 (79%)

Query: 1   MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
           +IAKCN  GKPVI ATQMLESMI  PR TRAE+SDVANAVLDG DCVMLSGETAKG+YPV
Sbjct: 266 LIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGNYPV 325

Query: 61  ECVRAMHNTCKEAEAAIWHTKLL 83
           E V+AM   C EAE A+ H  + 
Sbjct: 326 EAVKAMARICLEAEKALPHRNVF 348

This domain of the is actually a small beta-barrel domain nested within a larger TIM barrel. The active site is found in a cleft between the two domains. Length = 348
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors Back     alignment and domain information
>gnl|CDD|233257 TIGR01064, pyruv_kin, pyruvate kinase Back     alignment and domain information
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215255 PLN02461, PLN02461, Probable pyruvate kinase Back     alignment and domain information
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|235784 PRK06354, PRK06354, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|180487 PRK06247, PRK06247, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|140321 PTZ00300, PTZ00300, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215334 PLN02623, PLN02623, pyruvate kinase Back     alignment and domain information
>gnl|CDD|215409 PLN02765, PLN02765, pyruvate kinase Back     alignment and domain information
>gnl|CDD|180676 PRK06739, PRK06739, pyruvate kinase; Validated Back     alignment and domain information
>gnl|CDD|215407 PLN02762, PLN02762, pyruvate kinase complex alpha subunit Back     alignment and domain information
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|236178 PRK08187, PRK08187, pyruvate kinase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 157
PTZ00066513 pyruvate kinase; Provisional 100.0
PTZ00300454 pyruvate kinase; Provisional 100.0
PLN02762509 pyruvate kinase complex alpha subunit 100.0
PLN02461511 Probable pyruvate kinase 100.0
PRK09206470 pyruvate kinase; Provisional 100.0
PRK06354 590 pyruvate kinase; Provisional 100.0
PRK06247476 pyruvate kinase; Provisional 100.0
KOG2323|consensus501 100.0
PLN02765526 pyruvate kinase 100.0
cd00288480 Pyruvate_Kinase Pyruvate kinase (PK): Large allost 100.0
PRK05826465 pyruvate kinase; Provisional 100.0
COG0469477 PykF Pyruvate kinase [Carbohydrate transport and m 100.0
TIGR01064473 pyruv_kin pyruvate kinase. This enzyme is a homote 100.0
PLN02623581 pyruvate kinase 100.0
PRK06739352 pyruvate kinase; Validated 100.0
PF00224348 PK: Pyruvate kinase, barrel domain; InterPro: IPR0 100.0
PRK08187493 pyruvate kinase; Validated 99.95
PRK14725608 pyruvate kinase; Provisional 99.95
PF02887117 PK_C: Pyruvate kinase, alpha/beta domain; InterPro 99.26
>PTZ00066 pyruvate kinase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.9e-52  Score=373.39  Aligned_cols=156  Identities=45%  Similarity=0.539  Sum_probs=134.7

Q ss_pred             ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257            1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT   80 (157)
Q Consensus         1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~   80 (157)
                      ||++||++|||||+||||||||++||+|||||++||||||+||+||+|||||||.|+||+|+|++|++|++++|+.+++.
T Consensus       300 II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~  379 (513)
T PTZ00066        300 MISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGKFPVEAVNIMAKICFEAETCIDYR  379 (513)
T ss_pred             HHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcCCcCHHHHHHHHHHHHHHHhhccchH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999877665


Q ss_pred             HHHHHHhhhccCCCC-CCchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257           81 KLLTELKSMVSITKQ-YETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML  147 (157)
Q Consensus        81 ~~~~~l~~~~~~~~~-~e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl  147 (157)
                      .+|.........+.+ ++.++.+++.        +++++|.+|++|+++|||||.+    +|++++++|+|+|+|||+|+
T Consensus       380 ~~~~~~~~~~~~~~~~~~~ia~aa~~~A~~l~a~aIv~~T~SG~TAr~iSk~RP~~pIia~t~~~~~~R~L~L~wGV~p~  459 (513)
T PTZ00066        380 VLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKLIIALTETGNTARLISKYRPSCTILALSASPSVVKSLSVARGVTTY  459 (513)
T ss_pred             HhhhhhhccccCCCchhhHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEE
Confidence            555443221111212 3567766665        4689999999999999999999    59999999999999999999


Q ss_pred             eecCCCCCC
Q psy257          148 QKKSTDPTD  156 (157)
Q Consensus       148 ~~~~sd~~~  156 (157)
                      +.+..+++|
T Consensus       460 ~~~~~~~~~  468 (513)
T PTZ00066        460 VVNSFQGTD  468 (513)
T ss_pred             EecCCCCHH
Confidence            988766543

>PTZ00300 pyruvate kinase; Provisional Back     alignment and domain information
>PLN02762 pyruvate kinase complex alpha subunit Back     alignment and domain information
>PLN02461 Probable pyruvate kinase Back     alignment and domain information
>PRK09206 pyruvate kinase; Provisional Back     alignment and domain information
>PRK06354 pyruvate kinase; Provisional Back     alignment and domain information
>PRK06247 pyruvate kinase; Provisional Back     alignment and domain information
>KOG2323|consensus Back     alignment and domain information
>PLN02765 pyruvate kinase Back     alignment and domain information
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors Back     alignment and domain information
>PRK05826 pyruvate kinase; Provisional Back     alignment and domain information
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01064 pyruv_kin pyruvate kinase Back     alignment and domain information
>PLN02623 pyruvate kinase Back     alignment and domain information
>PRK06739 pyruvate kinase; Validated Back     alignment and domain information
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2 Back     alignment and domain information
>PRK08187 pyruvate kinase; Validated Back     alignment and domain information
>PRK14725 pyruvate kinase; Provisional Back     alignment and domain information
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query157
3g2g_A533 S437y Mutant Of Human Muscle Pyruvate Kinase, Isofo 2e-36
4b2d_D548 Human Pkm2 With L-serine And Fbp Bound Length = 548 2e-36
3u2z_A533 Activator-Bound Structure Of Human Pyruvate Kinase 2e-36
3gqy_A550 Activator-Bound Structure Of Human Pyruvate Kinase 2e-36
1zjh_A548 Structure Of Human Muscle Pyruvate Kinase (Pkm2) Le 2e-36
3srd_A551 Human M2 Pyruvate Kinase In Complex With Fructose 1 2e-36
4g1n_A518 Pkm2 In Complex With An Activator Length = 518 2e-36
1t5a_A567 Human Pyruvate Kinase M2 Length = 567 2e-35
3bjt_A530 Pyruvate Kinase M2 Is A Phosphotyrosine Binding Pro 2e-35
3bjf_A518 Pyruvate Kinase M2 Is A Phosphotyrosine Binding Pro 2e-35
3srf_C551 Human M1 Pyruvate Kinase Length = 551 5e-35
1pkm_A530 The Refined Three-Dimensional Structure Of Cat Musc 5e-35
1aqf_A530 Pyruvate Kinase From Rabbit Muscle With Mg, K, And 1e-34
2g50_A530 The Location Of The Allosteric Amino Acid Binding S 1e-34
3n25_A531 The Structure Of Muscle Pyruvate Kinase In Complex 2e-34
1f3x_A530 S402p Mutant Of Rabbit Muscle Pyruvate Kinase Lengt 2e-34
1f3w_A530 Recombinant Rabbit Muscle Pyruvate Kinase Length = 2e-34
1pkn_A530 Structure Of Rabbit Muscle Pyruvate Kinase Complexe 2e-34
2vgg_A528 Human Erythrocyte Pyruvate Kinase: R479h Mutant Len 9e-34
4ip7_A543 Structure Of The S12d Variant Of Human Liver Pyruva 1e-33
2vgb_A528 Human Erythrocyte Pyruvate Kinase Length = 528 1e-33
2vgi_A528 Human Erythrocyte Pyruvate Kinase: R486w Mutant Len 1e-33
2vgf_A528 Human Erythrocyte Pyruvate Kinase: T384m Mutant Len 4e-33
4ima_A543 The Structure Of C436m-hlpyk In Complex With Citrat 1e-32
3qv9_A499 Crystal Structure Of Trypanosoma Cruzi Pyruvate Kin 1e-27
3pp7_A498 Crystal Structure Of Leishmania Mexicana Pyruvate K 2e-27
1pkl_A499 The Structure Of Leishmania Pyruvate Kinase Length 2e-27
3e0v_A539 Crystal Structure Of Pyruvate Kinase From Leishmani 2e-27
3eoe_A511 Crystal Structure Of Pyruvate Kinase From Toxoplasm 6e-27
3khd_A520 Crystal Structure Of Pff1300w. Length = 520 1e-26
1a3w_A500 Pyruvate Kinase From Saccharomyces Cerevisiae Compl 6e-26
3t05_A 606 Crystal Structure Of S. Aureus Pyruvate Kinase Leng 3e-25
3ma8_A534 Crystal Structure Of Cgd1_2040, A Pyruvate Kinase F 4e-25
4drs_A526 Crystal Structure Of Cryptosporidium Parvum Pyruvat 4e-25
2e28_A 587 Crystal Structure Analysis Of Pyruvate Kinase From 9e-24
1pky_A470 Pyruvate Kinase From E. Coli In The T-State Length 6e-20
1e0u_A470 Structure R271l Mutant Of E. Coli Pyruvate Kinase L 8e-20
1e0t_A470 R292d Mutant Of E. Coli Pyruvate Kinase Length = 47 4e-19
3qtg_A461 Crystal Structure Of Pyruvate Kinase From Pyrobacul 1e-09
>pdb|3G2G|A Chain A, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2 Length = 533 Back     alignment and structure 
Iteration: 1

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 77/93 (82%)
Query: 1   MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
           MI +CN+ GKPVICATQMLESMIKKPR TRAE SDVANAVLDGADC+MLSGETAKGDYP+
Sbjct: 315 MIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPL 374
Query: 61  ECVRAMHNTCKEAEAAIWHTKLLTELKSMVSIT 93
           E VR  H   +EAEAAI+H +L  EL+ +  IT
Sbjct: 375 EAVRMQHLIAREAEAAIYHLQLFEELRRLAPIT 407
>pdb|4B2D|D Chain D, Human Pkm2 With L-serine And Fbp Bound Length = 548 Back     alignment and structure
>pdb|3U2Z|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2 Length = 533 Back     alignment and structure
>pdb|3GQY|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2 Length = 550 Back     alignment and structure
>pdb|1ZJH|A Chain A, Structure Of Human Muscle Pyruvate Kinase (Pkm2) Length = 548 Back     alignment and structure
>pdb|3SRD|A Chain A, Human M2 Pyruvate Kinase In Complex With Fructose 1-6 Bisphosphate And Oxalate. Length = 551 Back     alignment and structure
>pdb|4G1N|A Chain A, Pkm2 In Complex With An Activator Length = 518 Back     alignment and structure
>pdb|1T5A|A Chain A, Human Pyruvate Kinase M2 Length = 567 Back     alignment and structure
>pdb|3BJT|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein Length = 530 Back     alignment and structure
>pdb|3BJF|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein Length = 518 Back     alignment and structure
>pdb|3SRF|C Chain C, Human M1 Pyruvate Kinase Length = 551 Back     alignment and structure
>pdb|1PKM|A Chain A, The Refined Three-Dimensional Structure Of Cat Muscle (M1) Pyruvate Kinase, At A Resolution Of 2.6 Angstroms Length = 530 Back     alignment and structure
>pdb|1AQF|A Chain A, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L- Phospholactate Length = 530 Back     alignment and structure
>pdb|2G50|A Chain A, The Location Of The Allosteric Amino Acid Binding Site Of Muscle Pyruvate Kinase. Length = 530 Back     alignment and structure
>pdb|3N25|A Chain A, The Structure Of Muscle Pyruvate Kinase In Complex With Proline, Pyruvate, And Mn2+ Length = 531 Back     alignment and structure
>pdb|1F3X|A Chain A, S402p Mutant Of Rabbit Muscle Pyruvate Kinase Length = 530 Back     alignment and structure
>pdb|1F3W|A Chain A, Recombinant Rabbit Muscle Pyruvate Kinase Length = 530 Back     alignment and structure
>pdb|1PKN|A Chain A, Structure Of Rabbit Muscle Pyruvate Kinase Complexed With Mn2+, K+, And Pyruvate Length = 530 Back     alignment and structure
>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant Length = 528 Back     alignment and structure
>pdb|4IP7|A Chain A, Structure Of The S12d Variant Of Human Liver Pyruvate Kinase In Complex With Citrate And Fbp. Length = 543 Back     alignment and structure
>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase Length = 528 Back     alignment and structure
>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant Length = 528 Back     alignment and structure
>pdb|2VGF|A Chain A, Human Erythrocyte Pyruvate Kinase: T384m Mutant Length = 528 Back     alignment and structure
>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With Citrate/mn/atp/fru-1,6-bp Length = 543 Back     alignment and structure
>pdb|3QV9|A Chain A, Crystal Structure Of Trypanosoma Cruzi Pyruvate Kinase(Tcpyk)in Complex With Ponceau S. Length = 499 Back     alignment and structure
>pdb|3PP7|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase In Complex With The Drug Suramin, An Inhibitor Of Glycolysis. Length = 498 Back     alignment and structure
>pdb|1PKL|A Chain A, The Structure Of Leishmania Pyruvate Kinase Length = 499 Back     alignment and structure
>pdb|3E0V|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania Mexicana In Complex With Sulphate Ions Length = 539 Back     alignment and structure
>pdb|3EOE|A Chain A, Crystal Structure Of Pyruvate Kinase From Toxoplasma Gondii, 55.M00007 Length = 511 Back     alignment and structure
>pdb|3KHD|A Chain A, Crystal Structure Of Pff1300w. Length = 520 Back     alignment and structure
>pdb|1A3W|A Chain A, Pyruvate Kinase From Saccharomyces Cerevisiae Complexed With Fbp, Pg, Mn2+ And K+ Length = 500 Back     alignment and structure
>pdb|3T05|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase Length = 606 Back     alignment and structure
>pdb|3MA8|A Chain A, Crystal Structure Of Cgd1_2040, A Pyruvate Kinase From Cryptosporidium Parvum Length = 534 Back     alignment and structure
>pdb|4DRS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Pyruvate Kinase Length = 526 Back     alignment and structure
>pdb|2E28|A Chain A, Crystal Structure Analysis Of Pyruvate Kinase From Bacillus Stearothermophilus Length = 587 Back     alignment and structure
>pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-State Length = 470 Back     alignment and structure
>pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruvate Kinase Length = 470 Back     alignment and structure
>pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase Length = 470 Back     alignment and structure
>pdb|3QTG|A Chain A, Crystal Structure Of Pyruvate Kinase From Pyrobaculum Aerophilum Length = 461 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query157
1e0t_A470 Pyruvate kinase, PK; phosphotransferase, glycolysi 8e-59
3gg8_A511 Pyruvate kinase; malaria, genomics, proteomics, gl 2e-58
3khd_A520 Pyruvate kinase; malaria, structural genomics, str 5e-58
3hqn_D499 Pyruvate kinase, PK; TIM barrel, T-state enzyme, t 1e-57
3ma8_A534 Pyruvate kinase; parasitology, pyruvate kiase, gly 8e-57
1a3w_A500 Pyruvate kinase; allosteric regulation, tranferase 1e-56
3t05_A 606 Pyruvate kinase, PK; tetramer, glycolysis, transfe 3e-56
3gr4_A550 Pyruvate kinase isozymes M1/M2; activator, acetyla 2e-55
2e28_A 587 Pyruvate kinase, PK; allosteric, transferase; 2.40 4e-54
3qtg_A461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 9e-49
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Length = 470 Back     alignment and structure
 Score =  188 bits (480), Expect = 8e-59
 Identities = 46/93 (49%), Positives = 55/93 (59%)

Query: 1   MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
           MI KC +  K VI AT ML+SMIK PR T AE  DVANA+LDG D VMLSGE+AKG YP+
Sbjct: 263 MIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGKYPL 322

Query: 61  ECVRAMHNTCKEAEAAIWHTKLLTELKSMVSIT 93
           E V  M   C+  +  +            + IT
Sbjct: 323 EAVSIMATICERTDRVMNSRLEFNNDNRKLRIT 355
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Length = 511 Back     alignment and structure
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7} Length = 520 Back     alignment and structure
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* Length = 499 Back     alignment and structure
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase, magnesium, transferase, structural genomi structural genomics consortium; HET: CIT; 2.64A {Cryptosporidium parvum} Length = 534 Back     alignment and structure
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Length = 500 Back     alignment and structure
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* Length = 606 Back     alignment and structure
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* ... Length = 550 Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Length = 587 Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Length = 461 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query157
4drs_A526 Pyruvate kinase; glycolysis, allosteric EN transfe 100.0
3khd_A520 Pyruvate kinase; malaria, structural genomics, str 100.0
3hqn_D499 Pyruvate kinase, PK; TIM barrel, T-state enzyme, t 100.0
3gg8_A511 Pyruvate kinase; malaria, genomics, proteomics, gl 100.0
3gr4_A550 Pyruvate kinase isozymes M1/M2; activator, acetyla 100.0
1e0t_A470 Pyruvate kinase, PK; phosphotransferase, glycolysi 100.0
3t05_A 606 Pyruvate kinase, PK; tetramer, glycolysis, transfe 100.0
2e28_A 587 Pyruvate kinase, PK; allosteric, transferase; 2.40 100.0
3qtg_A461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 100.0
1a3w_A500 Pyruvate kinase; allosteric regulation, tranferase 100.0
1izc_A339 Macrophomate synthase intermolecular diels-aldera; 94.23
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A* Back     alignment and structure
Probab=100.00  E-value=7.1e-54  Score=385.90  Aligned_cols=156  Identities=43%  Similarity=0.523  Sum_probs=143.4

Q ss_pred             ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257            1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT   80 (157)
Q Consensus         1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~   80 (157)
                      ||++||++||||||||||||||++||+|||||++||||||+||+||||||||||.|+||+|+|++|++||+++|+.++|+
T Consensus       313 II~~c~~~gKPVI~ATQmLeSMi~np~PTRAEvsDVAnAV~DGaDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~  392 (526)
T 4drs_A          313 MISKCNVAGKPVVTATQMLESMIKSNRPTRAEMTDVANAVLDGSDCVMLSGETANGAFPFDAVNVMSRVCAQAETCIDYP  392 (526)
T ss_dssp             HHHHHHHHTCCEEEESCTTGGGGSSSSCCHHHHHHHHHHHHHTCSEEEESHHHHSCSCHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHcCCeEEEhhhhhHHHhhCCCCCCchHHHHHHHHHhCCceEEEcchhhcccCHHHHHHHHHHHHHHHhhcccch
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccCCCCC-Cchhhhhhh--------hhhhhccccccceeeeeecCCC----CCCCChhhhhhccccceeee
Q psy257           81 KLLTELKSMVSITKQY-ETIPTCLSY--------MSGWRTLNRETSVLLWHYRIGI----RTAKTSPAWLGGGYKGFIML  147 (157)
Q Consensus        81 ~~~~~l~~~~~~~~~~-e~i~~~~a~--------a~i~~T~sg~~A~LLskyRP~~----~T~~~~t~r~l~l~~Gv~pl  147 (157)
                      ..|+.+....+.+.+. ++|+.+++.        +++++|.+|++|+++|||||.+    +|++++++|+|+|+|||+|+
T Consensus       393 ~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~sG~tA~~iSr~RP~~pI~a~T~~~~~~r~l~L~wGV~p~  472 (526)
T 4drs_A          393 VLYHAIHSSVPKPVAVPEAIACSAVESAHDVNAKLIITITETGNTARLISKYRPSQTIIACTAKPEVARGLKIARGVKTY  472 (526)
T ss_dssp             HHHHHHHHHSCSSCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHHHHHHTCCSSEEEEEESCHHHHHHGGGSTTEEEE
T ss_pred             hhhhhhhhccCCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHhhhccCCeEEE
Confidence            8898887776655554 666666655        3578999999999999999999    69999999999999999999


Q ss_pred             eecCCCCCC
Q psy257          148 QKKSTDPTD  156 (157)
Q Consensus       148 ~~~~sd~~~  156 (157)
                      ++++.+++|
T Consensus       473 ~~~~~~~~d  481 (526)
T 4drs_A          473 VLNSIHHSE  481 (526)
T ss_dssp             ECSCCCCHH
T ss_pred             EeCCCCCHH
Confidence            999887764
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7} Back     alignment and structure
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* Back     alignment and structure
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Back     alignment and structure
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ... Back     alignment and structure
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Back     alignment and structure
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A* Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Back     alignment and structure
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Back     alignment and structure
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 157
d2g50a2282 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-t 2e-40
d1pkla2258 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-ter 9e-40
d1a3xa2265 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-ter 1e-39
d1e0ta2246 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-ter 1e-31
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 282 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  135 bits (340), Expect = 2e-40
 Identities = 63/83 (75%), Positives = 71/83 (85%)

Query: 1   MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPV 60
           +I +CN+ GKPVICATQMLESMIKKPR TRAE SDVANAVLDGADC+MLSGETAKGDYP+
Sbjct: 199 IIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPL 258

Query: 61  ECVRAMHNTCKEAEAAIWHTKLL 83
           E VR  H   +EAEAA++H KL 
Sbjct: 259 EAVRMQHLIAREAEAAMFHRKLF 281
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Length = 258 Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 265 Back     information, alignment and structure
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query157
d1a3xa2265 Pyruvate kinase, N-terminal domain {Baker's yeast 100.0
d1e0ta2246 Pyruvate kinase, N-terminal domain {Escherichia co 100.0
d1pkla2258 Pyruvate kinase, N-terminal domain {Leishmania mex 100.0
d2g50a2282 Pyruvate kinase, N-terminal domain {Rabbit (Orycto 100.0
d1pkla3141 Pyruvate kinase, C-terminal domain {Leishmania mex 99.5
d1a3xa3134 Pyruvate kinase, C-terminal domain {Baker's yeast 99.47
d2vgba3134 Pyruvate kinase, C-terminal domain {Human (Homo sa 99.45
d1e0ta3117 Pyruvate kinase, C-terminal domain {Escherichia co 99.41
d2g50a3135 Pyruvate kinase, C-terminal domain {Rabbit (Orycto 99.33
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-36  Score=250.41  Aligned_cols=84  Identities=64%  Similarity=0.899  Sum_probs=81.7

Q ss_pred             ChhHHHhcCCcEEEeehhhHHhhhCCCCCchhhhHHHHHHhhCcceeeecCcccCCCChHHHHHHHHHHHHHHHHhhhHH
Q psy257            1 MIAKCNKVGKPVICATQMLESMIKKPRATRAEISDVANAVLDGADCVMLSGETAKGDYPVECVRAMHNTCKEAEAAIWHT   80 (157)
Q Consensus         1 ii~~c~~~~kPvi~atq~LesM~~~~~ptRaEvsDv~nav~dg~d~imLs~ETa~G~~p~~~v~~~~~i~~~~e~~~~~~   80 (157)
                      ||++|+++|||||+||||||||++||+|||||++||+|||+||+||||||+|||.|+||+++|++|++||+++|+.++|.
T Consensus       182 Ii~~~~~~gkpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~vmLs~ETA~G~~Pv~~V~~~~~I~~~~E~~~~~~  261 (265)
T d1a3xa2         182 LIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNYPINAVTTMAETAVIAEQAIAYL  261 (265)
T ss_dssp             HHHHHHHHTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEECCSHHHHSCSCHHHHHHHHHHHHHHTTSSSCHH
T ss_pred             HHHHHHHcCCcEEehhhhhhhhccCCCCcHHHHHHHHHHHHhCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccchh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHH
Q psy257           81 KLLT   84 (157)
Q Consensus        81 ~~~~   84 (157)
                      ..|+
T Consensus       262 ~~~~  265 (265)
T d1a3xa2         262 PNYD  265 (265)
T ss_dssp             HHHH
T ss_pred             hccC
Confidence            8774
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1pkla3 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal domain {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g50a3 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure